[nco] 09/32: Imported Upstream version 4.4.4
Bas Couwenberg
sebastic at xs4all.nl
Mon Jan 19 00:00:32 UTC 2015
This is an automated email from the git hooks/post-receive script.
sebastic-guest pushed a commit to branch master
in repository nco.
commit cc26ebd228d3f3cb5380c3c2bf429350b3ce7c8d
Author: Bas Couwenberg <sebastic at xs4all.nl>
Date: Sun Jan 18 16:39:20 2015 +0100
Imported Upstream version 4.4.4
---
bld/Makefile | 36 +-
bld/nco.spec | 15 +-
bld/nco_dst.pl | 34 +-
bm/NCO_bm.pm | 26 +-
bm/NCO_rgr.pm | 113 +-
configure | 20 +-
configure.ac | 4 +-
data/in.cdl | 7 +-
data/in_grp.cdl | 4 +-
data/in_grp_5.cdl | 4 +-
doc/ANNOUNCE | 162 +-
doc/ChangeLog | 127 +
doc/README | 6 +-
doc/README_msvc.txt | 79 +
doc/TAG | 2 +-
doc/TODO | 9 +-
doc/VERSION | 2 +-
doc/debian.txt | 170 +-
doc/index.shtml | 90 +-
doc/nco.dvi | Bin 1299864 -> 1305096 bytes
doc/nco.html | 449 ++-
doc/nco.pdf | Bin 1203921 -> 1207615 bytes
doc/nco.ps | 6408 +++++++++++++++---------------
doc/nco.texi | 206 +-
doc/nco.txt | 3487 ++++++++--------
doc/nco.xml | 3429 ++++++++--------
doc/surfit_2013.txt | 2 +-
doc/{surfit_2013.txt => surfit_2014.txt} | 48 +-
man/ncap.1 | 6 +-
man/ncap2.1 | 6 +-
man/ncbo.1 | 6 +-
man/ncdiff.1 | 4 +-
man/ncea.1 | 6 +-
man/nces.1 | 6 +-
man/ncflint.1 | 6 +-
man/ncks.1 | 8 +-
man/nco.1 | 6 +-
man/ncpdq.1 | 6 +-
man/ncra.1 | 6 +-
man/ncrcat.1 | 6 +-
man/ncrename.1 | 6 +-
man/ncwa.1 | 6 +-
qt/libnco/libnco.vcxproj | 6 +-
qt/libnco_c++/libnco_c++.vcxproj | 4 +-
qt/ncap2/ncap2.vcxproj | 6 +-
qt/ncatted/ncatted.vcxproj | 6 +-
qt/ncbo/ncbo.vcxproj | 6 +-
qt/ncea/ncea.vcxproj | 6 +-
qt/ncecat/ncecat.vcxproj | 6 +-
qt/ncflint/ncflint.vcxproj | 6 +-
qt/ncks/ncks.vcxproj | 6 +-
qt/nco.sln | 1 +
qt/ncpdq/ncpdq.vcxproj | 6 +-
qt/ncra/ncra.vcxproj | 6 +-
qt/ncrcat/ncrcat.vcxproj | 6 +-
qt/ncrename/ncrename.vcxproj | 6 +-
qt/ncwa/ncwa.vcxproj | 6 +-
qt/tst_nco_c++/tst_nco_c++.vcxproj | 6 +-
src/nco++/Makefile.old | 9 +-
src/nco++/fmc_all_cls.cc | 19 +-
src/nco++/ncap2_utl.cc | 6 +-
src/nco++/ncoGrammer.g | 4 +-
src/nco++/ncoLexer.hpp | 4 +-
src/nco++/ncoParser.hpp | 4 +-
src/nco++/ncoTree.hpp | 4 +-
src/nco/ncap_lex.l | 49 +-
src/nco/ncatted.c | 10 +-
src/nco/ncbo.c | 14 +-
src/nco/ncecat.c | 18 +-
src/nco/ncflint.c | 10 +-
src/nco/ncks.c | 26 +-
src/nco/nco.h | 23 +-
src/nco/nco_att_utl.c | 9 +-
src/nco/nco_aux.c | 48 +-
src/nco/nco_aux.h | 4 +-
src/nco/nco_cnk.c | 28 +-
src/nco/nco_ctl.c | 7 +-
src/nco/nco_dmn_utl.c | 3 +-
src/nco/nco_fl_utl.c | 4 +-
src/nco/nco_grp_trv.c | 114 +-
src/nco/nco_grp_trv.h | 8 +-
src/nco/nco_grp_utl.c | 1524 ++++---
src/nco/nco_grp_utl.h | 71 +-
src/nco/nco_msa.c | 6 +-
src/nco/nco_mss_val.c | 6 +-
src/nco/nco_netcdf.c | 102 +-
src/nco/nco_netcdf.h | 7 +-
src/nco/nco_prn.c | 6 +-
src/nco/nco_scm.c | 2 +-
src/nco/nco_sng_utl.c | 34 +-
src/nco/nco_sng_utl.h | 6 +-
src/nco/nco_typ.h | 5 +-
src/nco/ncpdq.c | 14 +-
src/nco/ncra.c | 52 +-
src/nco/ncrename.c | 8 +-
src/nco/ncwa.c | 28 +-
src/nco_c++/Makefile.old | 9 +-
97 files changed, 9489 insertions(+), 7928 deletions(-)
diff --git a/bld/Makefile b/bld/Makefile
index d7fe525..9a73850 100644
--- a/bld/Makefile
+++ b/bld/Makefile
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/bld/Makefile,v 1.701 2014/04/02 19:23:46 zender Exp $ -*-makefile-*-
+# $Header: /cvsroot/nco/nco/bld/Makefile,v 1.707 2014/05/29 18:00:25 zender Exp $ -*-makefile-*-
# Purpose: GNU Makefile for NCO module nco
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -85,7 +85,7 @@
# 64-bit ABI netCDF4 on NCAR AIX systems (bluefire):
# cd ~/nco/bld;ANTLR='/contrib/antlr-2.7.7/bin/antlr' ANTLR_ROOT='/contrib/antlr-2.7.7' CURL_LIB='/contrib/curl/7.21.2/lib' GSL_INC='/contrib/gsl-1.12/include' GSL_LIB='/contrib/gsl-1.12/lib' HDF5_ROOT='/contrib/hdf5-1.8.7_seq' LDFLAGS='-lnetcdf -lhdf5_hl -lhdf5 -lz' NETCDF_ROOT='/contrib/netcdf/4.1.3_seq' SZ_LIB='/contrib/szip/lib' UDUNITS_LIB='/contrib/zlib/lib' make --jobs=1 OPTS=D SZ=Y allinone ABI=64;cd -
# 64-bit ABI netCDF4 on NCAR AIX systems (bluefire):
-# cd ~/bin/AIX;/usr/local/bin/tar cvzf ~/nco-4.4.3.aix53.tar.gz nc*;scp ~/nco-4.4.3.aix53.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+# cd ~/bin/AIX;/usr/local/bin/tar cvzf ~/nco-4.4.4.aix53.tar.gz nc*;scp ~/nco-4.4.4.aix53.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# netCDF4 on NCAR Linux cluster systems (mirage):
# cd ~/nco/bld;make OPTS=D allinone;cd -
# netCDF4 on ORNL Linux cluster systems (titan, rhea):
@@ -101,12 +101,12 @@
# export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}\:/glade/apps/opt/udunits/2.1.24/gnu/default/lib
# cd ~/nco/bld;make NETCDF_ROOT='/glade/apps/opt/netcdf/4.3.0-rc4/gnu/default' UDUNITS_INC='/glade/apps/opt/udunits/2.1.24/gnu/default/include' UDUNITS_LIB='/glade/apps/opt/udunits/2.1.24/gnu/default/lib' OPTS=D allinone;cd -
# Intel (works as of 20140129):
-# module add intel;module add gsl;module add netcdf/4.3.0-rc4;
+# module add intel;module add gsl;module add netcdf/4.3.0;
# export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}\:/glade/apps/opt/udunits/2.1.24/intel/12.1.4/lib
-# cd ~/nco/bld;make NETCDF_ROOT='/glade/apps/opt/netcdf/4.3.0-rc4/intel/default' UDUNITS_INC='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/include' UDUNITS_LIB='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/lib' OPTS=D allinone;cd -
+# cd ~/nco/bld;make NETCDF_ROOT='/glade/apps/opt/netcdf/4.3.0/intel/default' UDUNITS_INC='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/include' UDUNITS_LIB='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/lib' OPTS=D allinone;cd -
# Cygwin on Windows Vista systems:
# cd ~/nco/bld;ANTLR='antlr' make --jobs=1 GSL=Y OPTS=D NETCDF4=Y UDUNITS2=Y allinone;cd -
-# cd ~/bin/WIN32;tar cvzf ~/nco-4.4.3.win32.cygwin.tar.gz nc* ; scp ~/nco-4.4.3.win32.cygwin.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+# cd ~/bin/WIN32;tar cvzf ~/nco-4.4.4.win32.cygwin.tar.gz nc* ; scp ~/nco-4.4.4.win32.cygwin.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# Data files to dust
# cd ~/nco/data;scp cmip5.nc obs.nc mdl_1.nc mdl_2.nc in_grp*.nc in.nc dust.ess.uci.edu:/var/www/html/nco
@@ -504,9 +504,16 @@ endif # end if
ifeq (${UDUNITS2},Y)
# 20130607: -lexpat needed on .deb systems, not on RPM systems
UDUNITS_RPM_DRC := /usr/include/udunits2
-UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ifneq (${UDUNITS_INC},/usr/local/include)
+# UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ UDUNITS_RPM_TST := ${UDUNITS_RPM_DRC}/udunits2.h
+else
+ UDUNITS_RPM_TST := /usr/include/udunits2.h
+endif # end if
ifeq (${UDUNITS_RPM_TST},${UDUNITS_RPM_DRC}/udunits2.h)
NETCDF_INC += -I${UDUNITS_RPM_DRC}
+else
+ NETCDF_INC += -I${UDUNITS_INC}
endif # end if
ifneq (${UDUNITS_RPM_TST},${UDUNITS_RPM_DRC}/udunits2.h)
NC_LIBS += -ludunits2 -lexpat
@@ -601,8 +608,9 @@ MDL_BLD_SRC := $(addprefix ${MY_BLD_DIR}/,libnco_tst.c libnco_c++_tst.cc Makefil
MDL_BLD_SRC += $(addprefix ${MY_BM_DIR}/,NCO_bm.pm NCO_benchmarks.pm NCO_rgr.pm nco_bm.pl nco_bm.sh mk_bm_plots.pl) # `make tags' includes these files
MDL_BLD_SRC += $(addprefix ${MY_DAT_DIR}/,Makefile.am) $(addprefix ${MY_SRC_DIR}/,Makefile.am) $(addprefix ${MY_DOC_DIR}/,Makefile.am) $(addprefix ${NCO_CXX_SRC_DIR}/,Makefile.am) $(addprefix ${NCOXX_SRC_DIR}/,Makefile.am) # `make tags' includes these files
# Files, if any, to exclude from tags
-# TAGS_FILTER_FILES := .//libnco_tst.c .//libnco_c++_tst.cc ../src/nco/lex.${NCO_YY_PFX}.c
-TAGS_FILTER_FILES := .//libnco_tst.c .//libnco_c++_tst.cc
+#TAGS_FILTER_FILES := .//libnco_tst.c .//libnco_c++_tst.cc ../src/nco/lex.${NCO_YY_PFX}.c
+TAGS_FILTER_FILES := .//libnco_tst.c .//libnco_c++_tst.cc ../bld/lex.${NCO_YY_PFX}.c
+# TAGS_FILTER_FILES := .//libnco_tst.c .//libnco_c++_tst.cc
# Variables having to do with Qt build system
MDL_QT_SRC := $(addprefix ${MY_QT_DIR}/,nco.pro libnco/libnco.pro ncatted/ncatted.pro ncbo/ncbo.pro ncecat/ncecat.pro ncflint/ncflint.pro ncks/ncks.pro ncpdq/ncpdq.pro ncra/ncra.pro ncrename/ncrename.pro ncwa/ncwa.pro tst_nco_c++/tst_nco_c++.pro) # `make tags' includes these files
@@ -616,6 +624,8 @@ MDL_NCAP := $(addprefix ${MY_SRC_DIR}/,${MDL_NCAP_TRG}) # `make distclean' remov
# fxm: auto-generate source code components of C++ lists
MDL_CXX_SRC := $(addprefix ${NCOXX_SRC_DIR}/,libnco++.hh Makefile.am Makefile.old ncap2.cc ncap2.hh ncap2_utl.cc NcapVar.cc NcapVar.hh NcapVarVector.cc NcapVarVector.hh NcapVector.hh ncoGrammer.g nco_antlr_pst_prc.pl fmc_cls.cc fmc_cls.hh fmc_all_cls.cc fmc_all_cls.hh fmc_gsl_cls.cc fmc_gsl_cls.hh Invoke.cc Invoke.hh map_srt_tmp.hh nco_gsl.c nco_gsl.h prs_cls.cc prs_cls.hh sdo_utl.cc sdo_utl.hh sym_cls.cc sym_cls.hh VarOp.hh vtl_cls.hh) $(addprefix ${NCO_CXX_SRC_DIR}/,INSTALL libnco_c++. [...]
+TAGS_FILES := ${MY_SRC_DIR}/*.h $(filter-out ${TAGS_FILTER_FILES},${SRC_LST}) ${MDL_DOC_SRC} ${MDL_MAN} ${MDL_BLD_SRC} ${MDL_CXX_SRC} ${MDL_NCAP_SRC} ${MDL_QT_SRC}
+
# Redefine default C and C++ pattern rules
${MY_OBJ_DIR}/%.o : %.c
${CC} ${CPPFLAGS} ${CFLAGS} -c $< -o ${MY_OBJ_DIR}/$(notdir $@)
@@ -1024,8 +1034,11 @@ ifeq (${GCC_OR_CLANG},Y)
# -Dinline=: inline is not an ANSI keyword, must undefine inline to work with -ansi
# -fshort-enums: Make enums as short as possible, ususally non-int. Do not ever invoke this! This breaks ABI and causes subtle problems
ifeq (${OMP},Y)
+ifneq (clang,$(firstword ${CC}))
+# 20140526 clang does not recognize/utilize -fopenmp
OMP_FLG_C := -fopenmp
OMP_FLG_F := -fopenmp
+endif # endif clang
LDFLAGS += -lgomp -lpthread
endif # endif OMP
ifeq (${OPTS},O)
@@ -1766,7 +1779,7 @@ libnco_c++_tst: ${MY_BLD_DIR}/libnco_c++_tst
${MY_BLD_DIR}/libnco_c++_tst: ${MY_BLD_DIR}/libnco_c++_tst.o lib
${CXX} -o $@${BNR_SFX} $< ${LDFLAGS}
chmod 755 $@${BNR_SFX}
-rpm: ${MY_BLD_DIR}/nco.spec # Building rpm requires root priveleges, e.g., sudo make NCO_VRS=4.4.3 rpm
+rpm: ${MY_BLD_DIR}/nco.spec # Building rpm requires root priveleges, e.g., sudo make NCO_VRS=4.4.4 rpm
# Building NCO RPM requires following packages
# rpm -q bison flex netcdf-devel libtool automake autoconf udunits udunits-devel curl-devel libxml2 libxml2-devel librx-devel
# sudo yum install bison flex netcdf-devel libtool automake autoconf udunits udunits-devel curl-devel libxml2 libxml2-devel librx-devel
@@ -2090,6 +2103,8 @@ dbg:
@printf "SRC_LST = $(SRC_LST)\n"
@printf "STC = ${STC}\n"
@printf "SZ = ${SZ}\n"
+ @printf "TAGS_FILES = ${TAGS_FILES}\n"
+ @printf "TAGS_FILTER_FILES = ${TAGS_FILTER_FILES}\n"
@printf "THR_NBR = ${THR_NBR}\n"
@printf "THR_NBR_SNG = ${THR_NBR_SNG}\n"
@printf "TMP_LDFLAGS = ${TMP_LDFLAGS}\n"
@@ -2108,7 +2123,8 @@ dst_cln: cln bin_cln dat_cln doc_cln root_cln
cd ${MY_BLD_DIR}; rm -f *~
cd ${MY_DAT_DIR}; rm -f buggy.nc cmip5.nc dsm.nc obs.nc hdf.hdf mdl_1.nc mdl_2.nc mdl_3.nc in.nc in_4.nc in_grp.nc in_grp_1.nc in_grp_2.nc in_grp_3.nc in_grp_4.nc in_grp_5.nc in_grp_6.nc in_grp_7.nc in_rec_zero.nc *~
tags:
- etags ${MY_SRC_DIR}/*.h $(filter-out ${TAGS_FILTER_FILES},${SRC_LST}) ${MDL_DOC_SRC} ${MDL_MAN} ${MDL_BLD_SRC} ${MDL_CXX_SRC} ${MDL_NCAP_SRC} ${MDL_QT_SRC}
+ etags ${TAGS_FILES}
+# etags ${MY_SRC_DIR}/*.h $(filter-out ${TAGS_FILTER_FILES},${SRC_LST}) ${MDL_DOC_SRC} ${MDL_MAN} ${MDL_BLD_SRC} ${MDL_CXX_SRC} ${MDL_NCAP_SRC} ${MDL_QT_SRC}
# Reset internal YACC and LEX patterns
%.c : %.y
diff --git a/bld/nco.spec b/bld/nco.spec
index c1cd6c0..da00fd6 100644
--- a/bld/nco.spec
+++ b/bld/nco.spec
@@ -2,17 +2,17 @@
# http://cvs.fedoraproject.org/viewvc/devel/nco/nco.spec?view=co
Name: nco
-Version: 4.4.3
+Version: 4.4.4
Release: 1%{?dist}
Summary: Programs that manipulate netCDF files
Group: Applications/Engineering
License: GPL3
URL: http://nco.sf.net/
-# Obtain NCO version 4.4.3-1 tar.gz from Sourceforge using CVS:
+# Obtain NCO version 4.4.4-1 tar.gz from Sourceforge using CVS:
# cvs -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco login
-# cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4.4.3-1 -d nco-%{version} nco
-# tar czf nco-%{version}.tar.gz --exclude='nco-4.4.3/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude='ncap_yacc.[ch]' ./nco-%{version}
+# cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4.4.4-1 -d nco-%{version} nco
+# tar czf nco-%{version}.tar.gz --exclude='nco-4.4.4/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude='ncap_yacc.[ch]' ./nco-%{version}
Source0: nco-%{version}.tar.gz
#Patch0: nco_install_C_headers.patch
#Patch1: nco_find_udunits-dat.patch
@@ -108,10 +108,13 @@ fi
# %{_libdir}/libnco++.so
%changelog
-* Thu Apr 02 2014 Charlie Zender <zender at uci.edu> - 4.4.2-1
+* Thu May 29 2014 Charlie Zender <zender at uci.edu> - 4.4.4-1
+- new upstream 4.4.4
+
+* Thu Apr 02 2014 Charlie Zender <zender at uci.edu> - 4.4.3-1
- new upstream 4.4.3
-* Thu Feb 20 2014 Charlie Zender <zender at uci.edu> - 4.4.1-1
+* Thu Feb 20 2014 Charlie Zender <zender at uci.edu> - 4.4.2-1
- new upstream 4.4.2
* Thu Jan 29 2014 Charlie Zender <zender at uci.edu> - 4.4.1-1
diff --git a/bld/nco_dst.pl b/bld/nco_dst.pl
index 7723e0c..1e1077f 100755
--- a/bld/nco_dst.pl
+++ b/bld/nco_dst.pl
@@ -6,18 +6,18 @@
# Usage:
# Export tagged, public versions
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_3 # Build, do not release on SF
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --sf nco-4_4_3 # Build, release on SF
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --nst_all nco-4_4_3 # Install, do not build
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --nst_all nco-4_4_3 # Build and install
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_cnt nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_prs nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cgd_cnt nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cray_prs nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --bbl_cnt nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --blk_cnt nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --dat_cnt nco-4_4_3
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --ute_prs nco-4_4_3
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_4 # Build, do not release on SF
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --sf nco-4_4_4 # Build, release on SF
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --nst_all nco-4_4_4 # Install, do not build
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --nst_all nco-4_4_4 # Build and install
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_cnt nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_prs nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cgd_cnt nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cray_prs nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --bbl_cnt nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --blk_cnt nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --dat_cnt nco-4_4_4
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --ute_prs nco-4_4_4
# Export daily snapshot
# ${HOME}/nco/bld/nco_dst.pl --dbg=2
@@ -31,7 +31,7 @@ BEGIN{
unshift @INC,$ENV{'HOME'}.'/perl'; # Location of csz.pl and DBG.pm HaS98 p. 170
} # end BEGIN
-my $CVS_Header='$Header: /cvsroot/nco/nco/bld/nco_dst.pl,v 1.213 2014/04/02 05:40:23 zender Exp $';
+my $CVS_Header='$Header: /cvsroot/nco/nco/bld/nco_dst.pl,v 1.214 2014/05/01 19:05:38 zender Exp $';
# Specify modules
use strict; # Protect all namespaces
@@ -68,9 +68,9 @@ my ($rsh_cmd,$rcp_cmd,$cp_cmd,$rm_cmd,$mkdir_cmd,$cvs_cmd);
my $False=0;
my $True=1;
-my $CVS_Date='$Date: 2014/04/02 05:40:23 $';
-my $CVS_Id='$Id: nco_dst.pl,v 1.213 2014/04/02 05:40:23 zender Exp $';
-my $CVS_Revision='$Revision: 1.213 $';
+my $CVS_Date='$Date: 2014/05/01 19:05:38 $';
+my $CVS_Id='$Id: nco_dst.pl,v 1.214 2014/05/01 19:05:38 zender Exp $';
+my $CVS_Revision='$Revision: 1.214 $';
my $CVSROOT='zender at nco.cvs.sf.net:/cvsroot/nco'; # CVS repository
my $DATA=$ENV{'DATA'};
my $HOME=$ENV{'HOME'};
@@ -255,7 +255,7 @@ if($bld){
# Set up FTP server
chdir $dst_pth_pfx or die "$prg_nm: ERROR unable to chdir to $dst_pth_pfx: $!\n"; # $! is system error string
cmd_prc("$cp_cmd $doc_fl ./$dst_vrs/doc"); # Copy derived documentation to source directory
- cmd_prc("$tar_cmd cvzf $dst_fl --exclude='nco-4.4.3/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude=ncap_yacc.[ch] ./$dst_vrs"); # Create gzipped tarfile
+ cmd_prc("$tar_cmd cvzf $dst_fl --exclude='nco-4.4.4/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude=ncap_yacc.[ch] ./$dst_vrs"); # Create gzipped tarfile
cmd_prc("$rsh_cmd $www_mch $rm_cmd $www_drc/src/$dst_fl"); # Remove any distribution with same name
if($dly_snp){cmd_prc("$rsh_cmd $www_mch $rm_cmd -r $www_drc/src/nco-????????.tar.gz");} # Remove previous daily snapshots from WWW server
cmd_prc("$rcp_cmd $dst_fl $www_mch:$www_drc/src"); # Copy local tarfile to WWW server
diff --git a/bm/NCO_bm.pm b/bm/NCO_bm.pm
index fd0ef8f..caba7d9 100644
--- a/bm/NCO_bm.pm
+++ b/bm/NCO_bm.pm
@@ -1,6 +1,6 @@
package NCO_bm;
-# $Header: /cvsroot/nco/nco/bm/NCO_bm.pm,v 1.87 2013/12/31 05:14:01 zender Exp $
+# $Header: /cvsroot/nco/nco/bm/NCO_bm.pm,v 1.88 2014/05/27 16:51:56 zender Exp $
# Purpose: Library for nco_bm.pl benchmark and regression tests
# Module contains following functions:
@@ -460,7 +460,7 @@ sub tst_run {
my @cmd_lst= @$arr_ref; # Dereference to new array name
# Clear variables
my $ssdwrap_cmd = $dbg_sng = $err_sng = $pfx_mpi = $pfx_fk = "";
- my $cmd_rsl_is_num = 1; my $xpc_is_num = 1; # for extra return value checks
+ my $cmd_rsl_is_nbr = 1; my $xpc_is_nbr = 1; # for extra return value checks
# Twiddle $pfx_cmd to allow running mpnc* as non-MPI'd executable
if ($mpi_fk) {$pfx_fk = "$MY_BIN_DIR/mp"; }
@@ -635,15 +635,15 @@ sub tst_run {
# }
# # figure out if $cmd_rsl is numeric or alpha
# if ($cmd_rsl =~ /-{0,1}\d{0,9}\.{0,1}\d{0,9}/ &&
-# $cmd_rsl !~ /[a-df-zA-DF-Z ,]/) { $cmd_rsl_is_num = 1;}
+# $cmd_rsl !~ /[a-df-zA-DF-Z ,]/) { $cmd_rsl_is_nbr = 1;}
# else { #print "DEBUG: \$cmd_rsl is not numeric: $cmd_rsl \n";
-# $cmd_rsl_is_num = 0;
+# $cmd_rsl_is_nbr = 0;
# }
# # figure out if $nsr_xpc is numeric or alpha
# if ($nsr_xpc =~ /-{0,1}\d{0,9}\.{0,1}\d{0,9}/ &&
-# $nsr_xpc !~ /[a-df-zA-DF-Z ,]/) { $xpc_is_num = 1;}
+# $nsr_xpc !~ /[a-df-zA-DF-Z ,]/) { $xpc_is_nbr = 1;}
# else { #print "DEBUG: \$nsr_xpc is not numeric: $nsr_xpc \n";
-# $xpc_is_num = 0;
+# $xpc_is_nbr = 0;
# }
if ($timed) {
@@ -705,19 +705,19 @@ sub tst_run {
}
# Is $cmd_rsl numeric or alpha?
if ($cmd_rsl =~ /-{0,1}\d{0,9}\.{0,1}\d{0,9}/ &&
- $cmd_rsl !~ /[a-df-zA-DF-Z ,]/) { $cmd_rsl_is_num = 1;}
+ $cmd_rsl !~ /[a-df-zA-DF-Z ,]/) { $cmd_rsl_is_nbr = 1;}
else { #print "DEBUG: \$cmd_rsl is not numeric: $cmd_rsl \n";
- $cmd_rsl_is_num = 0;
+ $cmd_rsl_is_nbr = 0;
}
# Is $nsr_xpc numeric or alpha?
if ($nsr_xpc =~ /-{0,1}\d{0,9}\.{0,1}\d{0,9}/ &&
- $nsr_xpc !~ /[a-df-zA-DF-Z ,]/) { $xpc_is_num = 1;}
+ $nsr_xpc !~ /[a-df-zA-DF-Z ,]/) { $xpc_is_nbr = 1;}
else { #print "DEBUG: \$nsr_xpc is not numeric: $nsr_xpc \n";
- $xpc_is_num = 0;
+ $xpc_is_nbr = 0;
}
# Compare numeric results
- if ($cmd_rsl_is_num && $xpc_is_num) { # && it equals the expected value
+ if ($cmd_rsl_is_nbr && $xpc_is_nbr) { # && it equals the expected value
#print "\n \$nsr_xpc [$nsr_xpc] considered a number\n";
$dbg_sng .= "DEBUG: \$nsr_xpc assumed to be numeric: $nsr_xpc & actual \$cmd_rsl = [$cmd_rsl]\n";
if ($nsr_xpc == $cmd_rsl) {
@@ -734,7 +734,7 @@ sub tst_run {
my $diff = abs($nsr_xpc - $cmd_rsl);
$dbg_sng .= "DEBUG: !!FAILED (Numeric output) [expected: $nsr_xpc vs result: $cmd_rsl]. Difference = $diff.\n";
}
- }elsif(!$cmd_rsl_is_num && !$xpc_is_num)
+ }elsif(!$cmd_rsl_is_nbr && !$xpc_is_nbr)
{# Compare non-numeric tests
dbg_msg(2,"DEBUG: expected value assumed to be alphabetic: $nsr_xpc\n\$cmd_rsl = $cmd_rsl\n");
#print "\n \$nsr_xpc [$nsr_xpc] considered a string\n";
@@ -750,7 +750,7 @@ sub tst_run {
$dbg_sng .= "DEBUG: !!FAILED Alphabetic output (expected: $nsr_xpc vs result: $cmd_rsl) ";
}
} else { # No result at all?
- print STDERR " !!FAILED\n \$cmd_rsl_is_num = $cmd_rsl_is_num and \$xpc_is_num = $xpc_is_num\n";
+ print STDERR " !!FAILED\n \$cmd_rsl_is_nbr = $cmd_rsl_is_nbr and \$xpc_is_nbr = $xpc_is_nbr\n";
&failed();
$dbg_sng .= "DEBUG: !!FAILED - No result from [$opr_nm]\n";
}
diff --git a/bm/NCO_rgr.pm b/bm/NCO_rgr.pm
index 3ecdd5a..a6528b7 100644
--- a/bm/NCO_rgr.pm
+++ b/bm/NCO_rgr.pm
@@ -1,6 +1,6 @@
package NCO_rgr;
-# $Header: /cvsroot/nco/nco/bm/NCO_rgr.pm,v 1.489 2014/04/01 17:40:23 pvicente Exp $
+# $Header: /cvsroot/nco/nco/bm/NCO_rgr.pm,v 1.496 2014/05/27 16:51:56 zender Exp $
# Purpose: All REGRESSION tests for NCO operators
# BENCHMARKS are coded in "NCO_benchmarks.pm"
@@ -76,7 +76,7 @@ sub tst_rgr {
if($dodap ne "FALSE"){
print "DEBUG: in tst_rgr(), \$dodap = $dodap \n";
- if ($dodap ne "" && $fl_pth =~ /http/ ) { $in_pth_arg = "-p $fl_pth"; }
+ if ($dodap ne "" && $fl_pth =~ /http/) { $in_pth_arg = "-p $fl_pth"; }
if ($dodap eq "") { $in_pth_arg = "-p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata"; }
}
NCO_bm::dbg_msg(1,"------------- REGRESSION TESTS STARTED from tst_rgr() -------------");
@@ -92,13 +92,13 @@ my $RUN_NETCDF4_TESTS_VERSION_43=0;
system("ncks --get_prg_info");
# system() runs a command and returns exit status information as a 16 bit value:
# Low 7 bits are signal process died from, if any, and high 8 bits are actual exit value
-if( $? == -1 ){
+if($? == -1){
print "failed to execute: ncks --get_prg_info: $!\n";
}else{
my $exit_value=$? >> 8;
# nco_get_prg_info() returns codes
- # 3 (for library 3.x )
+ # 3 (for library 3.x)
# 41 (for library 4.1.x)
# 43 (for library 4.3.1.x)
@@ -240,7 +240,7 @@ print "\n";
# FAILS!
$tst_cmd[0]="ncatted -h -O $nco_D_flg -a units,,m,c,'meter second-1' $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -C -m -v lev %tmp_fl_00% | grep units | cut -d' ' -f 11-12"; ## daniel:fixme cut/ncks but how to do grep?
+ $tst_cmd[1]="ncks -C -m -v lev %tmp_fl_00% | grep units | cut -d ' ' -f 11-12"; ## daniel:fixme cut/ncks but how to do grep?
$dsc_sng="Modify all existing units attributes to meter second-1";
$tst_cmd[2]="meter second-1";
$tst_cmd[3]="SS_OK";
@@ -741,7 +741,7 @@ print "\n";
#ncks -C -g ecmwf -v tas1 out.nc
# obs.nc tas1=273, cmip5.nc giss tas1=274
- $dsc_sng="(Groups) Process relative matches, second file greater (obs.nc cmip5.nc )";
+ $dsc_sng="(Groups) Process relative matches, second file greater (obs.nc cmip5.nc)";
$tst_cmd[0]="ncbo -O $fl_fmt $nco_D_flg $in_pth_arg obs.nc cmip5.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -g giss -v tas1 %tmp_fl_00%";
$tst_cmd[2]="time[3]=4 tas1[3]=-1";
@@ -911,7 +911,7 @@ print "\n";
#nces #12
-# 2 groups, each one with a record (part 1 )
+# 2 groups, each one with a record (part 1)
# ncra -Y nces -h -O -g g25g1,g25g2 -v one_dmn_rec_var -d time,4 in_grp_3.nc in_grp_3.nc out.nc
$tst_cmd[0]="ncra -Y ncfe $omp_flg -h -O $fl_fmt $nco_D_flg -g g25g1,g25g2 -v one_dmn_rec_var -d time,4 $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
@@ -923,7 +923,7 @@ print "\n";
$#tst_cmd=0; # Reset array
#nces #13
-# 2 groups, each one with a record (part 2 )
+# 2 groups, each one with a record (part 2)
# ncra -Y nces -h -O -g g25g1,g25g2 -v one_dmn_rec_var -d time,4 in_grp_3.nc in_grp_3.nc out.nc
$tst_cmd[0]="ncra -Y ncfe $omp_flg -h -O $fl_fmt $nco_D_flg -g g25g1,g25g2 -v one_dmn_rec_var -d time,4 $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
@@ -938,7 +938,7 @@ print "\n";
#nces #14 # TODO
- #for i in $(seq -w 0 999) ; do iii=$( printf "%03d" ${i} ) ; ln in.nc foo${iii}.nc ; done
+ #for i in $(seq -w 0 999) ; do iii=$(printf "%03d" ${i}) ; ln in.nc foo${iii}.nc ; done
# TO DO run bash script above by perl
$tst_cmd[0]="ncra -Y ncfe $omp_flg -h -O $fl_fmt $nco_D_flg -v dgn_var $in_pth_arg in.nc in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks %tmp_fl_00%";
@@ -954,7 +954,6 @@ print "\n";
if($RUN_NETCDF4_TESTS == 1){
-
#nces #15
# ncra -Y ncge -h -O mdl_1.nc out.nc
# ncks -g cesm -v tas1 out.nc
@@ -988,11 +987,10 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
#nces #18
#ncra -Y ncge -O mdl_1.nc mdl_2.nc out.nc
- $dsc_sng="(Groups) 2 files ensembles";
+ $dsc_sng="(Groups) Two-file ensembles";
$tst_cmd[0]="ncra -Y ncge $omp_flg -h -O $fl_fmt $nco_D_flg $in_pth_arg mdl_1.nc mdl_2.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -g ecmwf -v tas1 %tmp_fl_00%";
$tst_cmd[2]="time[3]=4 tas1[3]=273.25";
@@ -1000,25 +998,25 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
# NEW NCO 4.4.2
-#nces #19 (check fixed variables)
-# ncra -Y ncge -h -O mdl_1.nc out.nc
+#nces #19 (check coordinate variables)
+# ncra -Y ncge -h -O mdl_1.nc out.nc
# ncks -g cesm -v time out.nc
+# NB: This test succeeds when it fails, i.e., the NCO command fails as it should because the input files do not conform
- $dsc_sng="(Groups) Ensemble fixed variables";
+ $dsc_sng="(Groups) Ensemble record coordinate variables";
$tst_cmd[0]="ncra -Y ncge $omp_flg -h -O $fl_fmt $nco_D_flg $in_pth_arg mdl_1.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -m -g cesm -v time %tmp_fl_00%";
- $tst_cmd[2]="time dimension 0: time, size = 4 NC_DOUBLE, chunksize = 1 (Record coordinate is time)";
+ $tst_cmd[1]="ncks -m --cdl -g cesm -v time %tmp_fl_00% | grep UNLIMITED";
+ $tst_cmd[2]=" time = UNLIMITED ; // (4 currently)";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
# NEW NCO 4.4.3
#nces #20 (error checking of ensemble variable dimensions)
-# ncra -Y ncge -O in_grp_4.nc in_grp_5.nc out.nc
+# ncra -Y ncge -O in_grp_4.nc in_grp_5.nc out.nc
- $dsc_sng="(Groups) Checking of conforming dimensions between ensemble variables";
+ $dsc_sng="(Groups) Invalid input, expect ERROR because dimensions do not conform between ensemble variables";
$tst_cmd[0]="ncra -Y ncge $omp_flg -h -O $fl_fmt $nco_D_flg $in_pth_arg in_grp_4.nc in_grp_5.nc %tmp_fl_00%";
$tst_cmd[1]="ncge: ERROR Variables do not conform: variable </cesm/cesm_02/three_dmn_rec_var> has dimension <time> with size 6, expecting size 10";
$tst_cmd[2]="SS_OK";
@@ -1029,16 +1027,15 @@ print "\n";
#nces #21
# ncra -Y ncge -h -O mdl_1.nc out.nc
- $dsc_sng="(Groups) Test CF fixed variables";
+ $dsc_sng="(Groups) Test CCM/CAM/CCSM special fixed variables";
$tst_cmd[0]="ncra -Y ncge $omp_flg -h -O $fl_fmt $nco_D_flg $in_pth_arg mdl_1.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -C -v gw %tmp_fl_00%";
+ $tst_cmd[1]="ncks -C -v gw %tmp_fl_00%";
$tst_cmd[2]="time[3]=4 gw[3]=1";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
} # #### Group Ensemble tests
-
# print "paused - hit return to continue"; my $wait=<STDIN>;
@@ -1101,11 +1098,9 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups 1: scalars -g g1g1 -v v1";
$tst_cmd[0]="ncecat $nco_D_flg -h -O -g g1g1 -v v1 $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
-
$tst_cmd[1]="ncks -H -d record,1,1,1 %tmp_fl_00%";
$tst_cmd[2]="record[1] v1[1]=11";
$tst_cmd[3]="SS_OK";
-
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -1115,14 +1110,11 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups 2: scalars -g g1g1 -v v1";
$tst_cmd[0]="ncecat $nco_D_flg -h -O -g g1g1 -v v1 $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
-
- $tst_cmd[1]="ncks %tmp_fl_00% | grep 'v1 dimension 0: /record, size = 2, chunksize = 1 (Record non-coordinate dimension)'";
- $tst_cmd[2]="v1 dimension 0: /record, size = 2, chunksize = 1 (Record non-coordinate dimension)";
+ $tst_cmd[1]="ncks --cdl %tmp_fl_00% | grep 'v1 ='";
+ $tst_cmd[2]=" v1 = 11, 11 ;";
$tst_cmd[3]="SS_OK";
-
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
#ncecat #6 part1
#ncecat -h -O -g g6g1 -v area in_grp.nc in_grp.nc out.nc
@@ -1130,11 +1122,9 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups 1: 1D -g g6g1 -v area";
$tst_cmd[0]="ncecat $nco_D_flg -h -O -g g6g1 -v area $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
-
$tst_cmd[1]="ncks -H -C -d record,1,1,1 -d lat,1,1,1 -g g6g1 -v area %tmp_fl_00%";
$tst_cmd[2]="record[1] lat[1]=90 area[3]=50";
$tst_cmd[3]="SS_OK";
-
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -1145,11 +1135,9 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups 2: 1D -g g6g1 -v area";
$tst_cmd[0]="ncecat $nco_D_flg -h -O -g g6g1 -v area $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
-
$tst_cmd[1]="ncks -C -g g6g1 -v area %tmp_fl_00% | grep 'area dimension 0: /record, size = 2, chunksize = 1 (Record non-coordinate dimension)'";
$tst_cmd[2]="area dimension 0: /record, size = 2, chunksize = 1 (Record non-coordinate dimension)";
$tst_cmd[3]="SS_OK";
-
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -1159,7 +1147,6 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups 1: 2D -v two_dmn_rec_var";
$tst_cmd[0]="ncecat $nco_D_flg -h -O -v two_dmn_rec_var $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
-
$tst_cmd[1]="ncks -C -d record,1,1,1 -d time,9,9,1 -d lev,2,2,1 -v two_dmn_rec_var %tmp_fl_00%";
$tst_cmd[2]="record[1] time[9]=10 lev[2]=1000 two_dmn_rec_var[59]=3";
$tst_cmd[3]="SS_OK";
@@ -1174,11 +1161,9 @@ print "\n";
$dsc_sng="(Groups) Concatenate variables/groups";
$tst_cmd[0]="ncecat $nco_D_flg -h -O $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
-
$tst_cmd[1]="ncks -m -C -g g25g1 -v one_dmn_rec_var %tmp_fl_00%";
$tst_cmd[2]="one_dmn_rec_var dimension 1: time, size = 10 NC_DOUBLE, chunksize = 10 (Coordinate is time)";
$tst_cmd[3]="SS_OK";
-
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -1208,7 +1193,6 @@ print "\n";
} #### Group tests
-
#ncecat #12
#Concatenate files containing same variable in different orders
# ncks -O -v time,one ~/nco/data/in.nc ~/foo1.nc
@@ -1607,7 +1591,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#ncks #21 groups: Extract variables in groups (test -g with -v )
+#ncks #21 groups: Extract variables in groups (test -g with -v)
$dsc_sng="(Groups) Extract variables in groups";
$tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -v scl -g g1g1,g1 $in_pth_arg in_grp.nc %tmp_fl_00%";
@@ -1619,7 +1603,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#ncks #22 groups: Create variables in groups (test -G with -v and -g )
+#ncks #22 groups: Create variables in groups (test -G with -v and -g)
$dsc_sng="(Groups) Create variables in groups";
$tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -G g8 -g g3 -v scl $in_pth_arg in_grp_3.nc %tmp_fl_00%";
@@ -1631,7 +1615,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#ncks #23 groups: Hyperslabs (test -d with -v and -g: Extracts the second value (2) from g4/one_dmn_rec_var )
+#ncks #23 groups: Hyperslabs (test -d with -v and -g: Extracts the second value (2) from g4/one_dmn_rec_var)
$dsc_sng="(Groups) Hyperslabs in groups";
$tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -C -g g4 -v one_dmn_rec_var -d time,1,1 $in_pth_arg in_grp.nc %tmp_fl_00%";
@@ -2339,7 +2323,7 @@ print "\n";
#ncks #73
# ncks -v lat -d latitude,0,1,1 in_grp.nc
- $dsc_sng="(Groups) Invalid dimension input -v lat -d latitude,0,1,1 in_grp.nc";
+ $dsc_sng="(Groups) Invalid input, expect ERROR because user-specified dimension \"latitude\" DNE";
$tst_cmd[0]="ncks $nco_D_flg -v lat -d latitude,0,1,1 $in_pth_arg in_grp.nc";
$tst_cmd[1]="ncks: ERROR dimension latitude is not in input file";
@@ -4318,7 +4302,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_int -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_int -d time,2 -d lat,0 %tmp_fl_00%");
- # used to cut field 5: ( 1 + 2x2 + 0x1 = 5)
+ # used to cut field 5: (1 + 2x2 + 0x1 = 5)
$dsc_sng="Dimension reduction on type int with min switch and missing values";
push(@tst_cmd, "-99");
push(@tst_cmd, "SS_OK");
@@ -4330,7 +4314,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_int -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_int -d time,3 -d lat,0 %tmp_fl_00%");
- # used to cut field 7: ( 1 + 3x2 + 0x1 = 7)
+ # used to cut field 7: (1 + 3x2 + 0x1 = 7)
$dsc_sng="Dimension reduction on type int variable";
$prsrv_fl=1;
push(@tst_cmd, "25");
@@ -4343,7 +4327,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_sht -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_sht -d time,9 -d lat,1 %tmp_fl_00%");
- # used to cut field 20: ( 1 + 9x2 + 1x1 = 20)
+ # used to cut field 20: (1 + 9x2 + 1x1 = 20)
$dsc_sng="Dimension reduction on type short variable with min switch and missing values";
push(@tst_cmd, "-99");
push(@tst_cmd, "SS_OK");
@@ -4355,7 +4339,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_sht -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_sht -d time,3 -d lat,1 %tmp_fl_00%");
- # used to cut field 8: ( 1 + 3x2 + 1x1 = 8)
+ # used to cut field 8: (1 + 3x2 + 1x1 = 8)
$dsc_sng="Dimension reduction on type short variable";
$prsrv_fl=1;
push(@tst_cmd, "29");
@@ -4389,7 +4373,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_dbl -a lat,lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%f' -v three_dmn_var_dbl -d time,3 %tmp_fl_00%");
- # used to cut field 4: ( 1 + 3x1=4)
+ # used to cut field 4: (1 + 3x1=4)
$dsc_sng="Dimension reduction on type double variable with max switch and missing values";
push(@tst_cmd, "-99");
push(@tst_cmd, "SS_OK");
@@ -4401,7 +4385,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_dbl -a lat,lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%f' -v three_dmn_var_dbl -d time,4 %tmp_fl_00%");
- # used to cut field 5: ( 1 + 4x1=5)
+ # used to cut field 5: (1 + 4x1=5)
$dsc_sng="Dimension reduction on type double variable";
$prsrv_fl=1;
push(@tst_cmd, "40");
@@ -4414,7 +4398,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_int -a lat $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_int -d time,2 -d lon,0 %tmp_fl_00%");
- # used to cut field 9: ( 1 + 2x4 + 0x1=9)
+ # used to cut field 9: (1 + 2x4 + 0x1=9)
$dsc_sng="Dimension reduction on type int variable with min switch and missing values";
push(@tst_cmd, "-99");
push(@tst_cmd, "SS_OK");
@@ -4598,7 +4582,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon $in_pth_arg in_grp_3.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,3 %tmp_fl_00%");
- # used to cut field 4: ( 1 + 3x1=4)
+ # used to cut field 4: (1 + 3x1=4)
$dsc_sng="(Groups) Dimension reduction on type double variable with max switch and missing values";
push(@tst_cmd, "-99");
push(@tst_cmd, "SS_OK");
@@ -4614,7 +4598,7 @@ if (0){
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon $in_pth_arg in_grp_3.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,4 %tmp_fl_00%");
- # used to cut field 5: ( 1 + 4x1=5)
+ # used to cut field 5: (1 + 4x1=5)
$dsc_sng="(Groups) Dimension reduction on type double variable";
$prsrv_fl=1;
push(@tst_cmd, "40");
@@ -4679,10 +4663,10 @@ if (0){
# ncwa -h -O -a time -b -v time in_grp.nc out.nc
# ncks out.nc | grep 'time dimension 0'
- $tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a time -b -v time $in_pth_arg in_grp.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks %tmp_fl_00% | grep 'time dimension 0:'";
- $dsc_sng="(Groups) -b degenerate a record dimension";
- $tst_cmd[2]="time dimension 0: time, size = 1 NC_DOUBLE, chunksize = 1 (Record coordinate is time)";
+ $tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a time -b -v time $in_pth_arg in_grp.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -H -v /g2/time %tmp_fl_00% | grep '=5.5'";
+ $dsc_sng="(Groups) retain degenerate record dimension";
+ $tst_cmd[2]="time[0]=5.5";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -4793,8 +4777,7 @@ if (0){
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
- } #### Group tests
-
+ } #### Group tests
#NEW 4.4.2
#ncwa #60 (part 1)
@@ -4835,9 +4818,8 @@ if (0){
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
#### Group tests
- if($RUN_NETCDF4_TESTS == 1){
+ if($RUN_NETCDF4_TESTS == 1){
#NEW 4.4.3
#ncwa #63
@@ -4850,8 +4832,19 @@ if (0){
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
- }
+ }
+#NEW 4.4.4
+#ncwa #64
+# ncwa -O -C -v Lat -a Lat --mask_condition "Lat < -60.0" ~/Lat.nc ~/foo.nc
+# ncks -H -v Lat ~/foo.nc
+ $dsc_sng="Mask condition with negative value";
+ $tst_cmd[0]="ncwa $omp_flg $nco_D_flg -O -C -v Lat -a Lat --mask_condition 'Lat < -60.0' $in_pth_arg in.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -H -v Lat %tmp_fl_00%";
+ $tst_cmd[2]="Lat = _";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
####################
#### ncrename tests #### OK!
diff --git a/configure b/configure
index 314d39b..0b2fcee 100755
--- a/configure
+++ b/configure
@@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for NCO netCDF Operators 4.4.3.
+# Generated by GNU Autoconf 2.69 for NCO netCDF Operators 4.4.4.
#
# Report bugs to <nco-bugs at lists.sourceforge.net>.
#
@@ -592,8 +592,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='NCO netCDF Operators'
PACKAGE_TARNAME='nco'
-PACKAGE_VERSION='4.4.3'
-PACKAGE_STRING='NCO netCDF Operators 4.4.3'
+PACKAGE_VERSION='4.4.4'
+PACKAGE_STRING='NCO netCDF Operators 4.4.4'
PACKAGE_BUGREPORT='nco-bugs at lists.sourceforge.net'
PACKAGE_URL=''
@@ -1385,7 +1385,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures NCO netCDF Operators 4.4.3 to adapt to many kinds of systems.
+\`configure' configures NCO netCDF Operators 4.4.4 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1456,7 +1456,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of NCO netCDF Operators 4.4.3:";;
+ short | recursive ) echo "Configuration of NCO netCDF Operators 4.4.4:";;
esac
cat <<\_ACEOF
@@ -1617,7 +1617,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-NCO netCDF Operators configure 4.4.3
+NCO netCDF Operators configure 4.4.4
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2483,7 +2483,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by NCO netCDF Operators $as_me 4.4.3, which was
+It was created by NCO netCDF Operators $as_me 4.4.4, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@@ -3732,7 +3732,7 @@ fi
# Define the identity of the package.
PACKAGE='nco'
- VERSION='4.4.3'
+ VERSION='4.4.4'
cat >>confdefs.h <<_ACEOF
@@ -20986,7 +20986,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by NCO netCDF Operators $as_me 4.4.3, which was
+This file was extended by NCO netCDF Operators $as_me 4.4.4, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@@ -21052,7 +21052,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-NCO netCDF Operators config.status 4.4.3
+NCO netCDF Operators config.status 4.4.4
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"
diff --git a/configure.ac b/configure.ac
index b3d3ea7..6c215f2 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/configure.ac,v 1.44 2014/04/02 05:40:22 zender Exp $ -*-Shell-script-*-
+# $Header: /cvsroot/nco/nco/configure.ac,v 1.45 2014/05/01 19:05:38 zender Exp $ -*-Shell-script-*-
# Purpose: Template autoconf uses to generate NCO configure script
# Newer convention names this file configure.ac, rather than configure.in
@@ -51,7 +51,7 @@
# Process configure input with autoconf to produce configure script
# (package name,version,bug-report-address,tarball name)
-AC_INIT([NCO netCDF Operators],[4.4.3],[nco-bugs at lists.sourceforge.net],[nco])
+AC_INIT([NCO netCDF Operators],[4.4.4],[nco-bugs at lists.sourceforge.net],[nco])
# Print GNU copyright in configure script
AC_COPYRIGHT
diff --git a/data/in.cdl b/data/in.cdl
index d72068b..1551741 100644
--- a/data/in.cdl
+++ b/data/in.cdl
@@ -60,7 +60,7 @@ variables:
:Conventions = "CF-1.0";
:history = "History global attribute.\nAttributes like this often have embedded newlines to enhance legibility.\nSuch newlines should serve as linebreaks on the screen, hence,\nfriendly CDL converters print a single NC_CHAR attribute as a comma-separated list of strings\nwhere each embedded delimiter marks a linebreak.\nOtherwise it would be harder for humans to read the CDL.";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in.cdl,v 1.184 2013/12/23 06:22:19 zender Exp $";
+ :RCS_Header = "$Header: /cvsroot/nco/nco/data/in.cdl,v 1.187 2014/04/13 02:36:53 zender Exp $";
int date_int(date_dmn);
date_int:long_name = "Date (as array of ints: YYYY,MM,DD,HH,MM)";
@@ -414,6 +414,10 @@ variables:
upk_arr:long_name = "Unpacked array";
upk_arr:note = "Unpacked value is -32767.d, 0.d, 1.d, 32767.d, packed is same in short. Packing algorithm should yield an NC_SHORT array = [] with packing attributes scale_factor=1.0d, add_offset=0.0d";
+ float val_eminusten;
+ val_eminusten:long_name = "Floating point number with exponent ending in zero to test sng_trm_trl_zro()";
+ val_eminusten:att_eminusten = 1.1e-10f;
+
int val_one_int;
val_one_int:long_name = "scalar equal to 1";
val_one_int:_FillValue = -99l;
@@ -1338,6 +1342,7 @@ data:
val_half=0.5;
val_half_half=0.5,0.5;
val_max_max_sht=17000,17000;
+ val_eminusten=1.1e-10;
val_one_int=1;
val_one_mss=1.,1.0e36;
val_one_mss_int=1,-99;
diff --git a/data/in_grp.cdl b/data/in_grp.cdl
index f466792..aaa66fd 100644
--- a/data/in_grp.cdl
+++ b/data/in_grp.cdl
@@ -78,7 +78,7 @@ netcdf in_grp {
:Conventions = "CF-1.0";
:history = "History global attribute.\n";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_grp.cdl,v 1.120 2014/02/20 16:43:22 zender Exp $";
+ :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_grp.cdl,v 1.121 2014/05/20 21:54:00 zender Exp $";
data:
area=10.,10.;
@@ -103,11 +103,13 @@ netcdf in_grp {
lon:units = "degrees_east";
float scl;
int g1v1;
+ int g1v2;
int v1;
data:
lon=0,90,180,270;
scl=1.1;
g1v1=1;
+ g1v2=2;
v1=1;
group: g1g1 {
variables:
diff --git a/data/in_grp_5.cdl b/data/in_grp_5.cdl
index ef3d530..a269e4f 100644
--- a/data/in_grp_5.cdl
+++ b/data/in_grp_5.cdl
@@ -21,7 +21,7 @@ netcdf in_grp_5 {
float three_dmn_rec_var(time,lat,lon);
data:
- lat=-90,90;
+ lat=-90,90;
lon=0,90,180,270;
time=1.,2.,3.,4.,5.,6.;
@@ -36,7 +36,7 @@ netcdf in_grp_5 {
group: cesm_04 {
- dimensions:
+ dimensions:
lat=2;
lon=4;
time=unlimited;
diff --git a/doc/ANNOUNCE b/doc/ANNOUNCE
index a6c5d28..9c70080 100644
--- a/doc/ANNOUNCE
+++ b/doc/ANNOUNCE
@@ -1,65 +1,121 @@
-$Header: /cvsroot/nco/nco/doc/ANNOUNCE,v 1.700 2014/04/02 19:23:46 zender Exp $ -*-text-*-
+$Header: /cvsroot/nco/nco/doc/ANNOUNCE,v 1.717 2014/05/29 18:19:54 zender Exp $ -*-text-*-
-The netCDF Operators NCO version 4.4.3 are ready.
+The netCDF Operators NCO version 4.4.4 are ready.
http://nco.sf.net (Homepage)
http://dust.ess.uci.edu/nco (Homepage "mirror")
This release is mainly a bugfix and stability release.
-The new features may interest those using hierarchical group files,
-needing Python wrappers for NCO, and those accessing strided data
-over DAP.
-
-Work on NCO 4.4.4 is underway, still focused on stability and speed.
-There will be more netCDF4 mop-up, improved group broadcasting
-algorithms, and, possibly, improved HDF4 support, and new chunking
+A few new features improve some corner-cases:
+It includes workarounds that allow NCO to successfully work with
+some names that violate netCDF but not HDF rules.
+Users can now retain "orphaned" dimensions after variable subsetting.
+nces now works with hyperslabs that resolve to the same size.
+Group broadcasting by ncbo is more intelligent when differencing
+ensemble means (created by nces) from full datasets.
+
+A potentially serious bug in ncwa --mask_condition has been fixed.
+Users of ncwa --mask_condition are encouraged to upgrade.
+
+Work on NCO 4.4.5 is underway, still focused on stability and speed.
+This includes more netCDF4 mop-up, improved group broadcasting
+algorithms, and, possibly, improved HDF4 support, and new chunking
features.
Enjoy,
Charlie
-"New stuff" in 4.4.3 summary (full details always in ChangeLog):
-
-NEW FEATURES:
-
-A. Group broadcasting works with ensembles. Now files containing
- ensembles (sets of replicated experiments where all ensemble
- members stored in groups residing under a common group) may be
- used in binary operations (i.e., ncbo) with "scalar files",
- i.e., files with the same variables but without ensembles.
- This is useful, for example, in comparing multiple model results
- to a single set of observations.
- ncbo cmip5.nc obs.nc -p ~/nco/data ~/foo.nc
- http://nco.sf.net/nco.html#grp_brd
-
-A. Contributed Python wrappers: Check-out NCOpy by Joe Hamman
- http://nco.sf.net#python
+NEW FEATURES (full details always in ChangeLog):
+
+A. NCO now contains automatic workarounds to handle element names that
+ contain characters that are legal in HDF though are illegal in
+ netCDF. For example, slashes and leading special characters are
+ are legal in HDF and illegal in netCDF element (i.e., group,
+ variable, dimension, and attribute) names. NCO converts these
+ forbidden characters to underscores, and retains the original names
+ of variables in automatically produced attributes named hdf_name.
+ Two real-world examples: NCO translates the NASA CERES dimension
+ "(FOV) Footprints" to "_FOV_ Footprints", and "Cloud & Aerosol,
+ Cloud Only, Clear Sky w/Aerosol, and Clear Sky" (yes, that's really
+ a dimension name) to "Cloud & Aerosol, Cloud Only, Clear Sky
+ w_Aerosol, and Clear Sky".
+ ncks CERES_MODIS.hdf CERES_MODIS.nc
+ http://nco.sf.net/nco.html#hdf4
+
+B. ncks --rad to Retain all dimensions.
+ When invoked with --rad, ncks copies each dimension in the input
+ file to the output file, regardless of whether the dimension is
+ utilized by any variables. Normally ncks discards "orphan
+ dimensions", i.e., dimensions not referenced by any variables.
+ This switch allows users to keep non-referenced dimensions.
+ When invoked in printing mode, this causes orphaned dimensions to
+ be printed (they are not printed by default).
+ ncks -O -C -v lat,lon ~/nco/data/in.nc ~/foo.nc
+ ncks --rad -O -x -v lat ~/foo.nc ~/foo2.nc
+ ncks --rad --cdl ~/foo2.nc
+ http://nco.sf.net/nco.html#rad
+
+C. nces now computes statistics on ensemble members whose specified
+ hyperslabs resolve to the same size. nces has always worked well
+ with identically shaped ensemble members, and on ensemble members
+ whose record-dimension hyperslabs resolve to the same size.
+ Now nces works well with ensemble members whose specified
+ hyperslabs along any dimension resolve to the same size. The
+ use-case that demanded this was a researcher who wished to compare
+ a certain lat/lon region (stored in some regional files) with the
+ same region stored in other global files (with the same grid).
+ The regional files (e.g., Greenland only) are much smaller than
+ global files so nces's new capability allows users to "get by" with
+ regional files rather than always storing global files.
+ nces -O --nsm_grp -d lat,0 -d lon,2 -d time,0 -p ~/nco/data grp1.nc grp2.nc ~/foo.nc
+ http://nco.sf.net/nco.html#nces
BUG FIXES:
-A. NCO now employs a much faster access method for hyperslabs.
- The new method dramatically speeds-up access to strided hyperslabs
- across DAP connections. Thanks to Rich Signell, Jeff Whittaker, and
- Anil for help identifying the problem and the solution.
-
-B. ncwa and ncpdq could sometimes process (i.e., average, permute
- or pack) over dimensions besides those specified by the user.
- This only occurred if the specified dimension name was a proper
- subset of the name of another dimension. In that case, both would
- be processed. Reported by Marie-Alice Foujols.
-
-C. Fix a problem where cell_methods could be written multiple times in
- ensemble datasets.
-
-D. Segregate regression tests so there are fewer failures on older
- netCDF libraries.
-
-KNOWN ISSUES NOT YET FIXED:
+A. Fixed ncwa incorrect interpretation of some --mask_conditions.
+ Lexer/Parser could return incorrect mask values for negative numbers.
+ Thanks to Keith Lindsay for report, and to Henry Butowsky for fix.
+ Prior to this fix, the ncwa lexer would drop the negative sign, if
+ any, from the comparators appearing in the mask condition, e.g.,
+ ncwa --mask_condition "lat < -20" was parsed as "lat < 20" not
+ "lat < -20". Hence, users of ncwa --mask_condition (or -B) should
+ upgrade. NB: The -m -M -T form of ncwa masking is/was not buggy.
+ http://nco.sf.net#bug_ncwa_mask_condition
+
+B. Restore former tolerance of -x for non-existent elements.
+ NCO normally requires that variables and groups specified with -v
+ and -g must match the input file contents. The exception is when
+ the -x flag tells NCO to exclude these elements. This exception
+ was broken since NCO 4.2.x, and is now working again. Now excluding
+ non-existent variables should one again work, e.g.,
+ ncks -O -x -v no_such_variable ~/nco/data/in.nc ~/foo.nc
+ Thanks to Keith Oleson for this bug report.
+ http://nco.sf.net/nco.html#x
+
+C. Fix bug that caused CDL and XML printing to truncate trailing zeros
+ of floating point exponents. Before this bugfix, ncks --cdl would
+ print 1.100e-10 as 1.100e-1 instead of 1.1e-10. All CDL and XML
+ printing prior to 4.4.4 mis-prints floating point numbers with
+ exponents that end in zero (i.e., +/- 10, 20, 30 ... 200, 210...).
+ Users of CDL and XML mode are urged to upgrade. This bug changed
+ affected values by some multiple of 10 orders of magnitude.
+ Hence it is likely that users affected by this bug would notice it
+ when carefully performing any statistics, yet possible they would
+ not for fields with large dynamic ranges. Thanks to Stubaan for report.
+
+D. Fix regression tests not to cause false negatives due to netCDF
+ 4.3.2 record dimension chunk size changes
+
+E. ncdismember better handles whitespace in group names
+
+F. Fix numerous memory leaks and some corner-case segfaults
+
+KNOWN PROBLEMS:
This section of ANNOUNCE reports and reminds users of the
existence and severity of known, not yet fixed, problems.
- These problems occur with NCO 4.4.3 built/tested with netCDF
- 4.3.2-rc1 on top of HDF5 hdf5-1.8.12 with these methods:
+ These problems occur with NCO 4.4.4 built/tested with netCDF
+ 4.3.3-rc1 on top of HDF5 hdf5-1.8.12 with these methods:
cd ~/nco;./configure --enable-netcdf4 # Configure mechanism -or-
cd ~/nco/bld;make dir;make allinone # Old Makefile mechanism
@@ -120,23 +176,17 @@ D. NOT YET FIXED (would require DAP protocol change)
"Sticky" reminders:
-A. Pre-built, up-to-date Debian Sid & Ubuntu packages:
+A. Pre-built Debian Sid & Ubuntu packages:
http://nco.sf.net#debian
B. Pre-built Fedora and CentOS RPMs:
http://nco.sf.net#rpm
-C. Pre-built Windows (native) and Cygwin binaries:
- http://nco.sf.net#windows
-
-D. Pre-built AIX binaries:
- http://nco.sf.net#aix
+C. Pre-built Mac binaries:
+ http://nco.sf.net#mac
-E. NCO support for netCDF4 features is tracked at
-
- http://nco.sf.net/nco.html#nco4
-
- NCO supports netCDF4 atomic data types, compression, chunking, and groups.
+D. Pre-built Windows (native) and Cygwin binaries:
+ http://nco.sf.net#windows
F. Reminder that NCO works on most HDF4 and HDF5 datasets, e.g.,
HDF4: AMSR MERRA MODIS ...
diff --git a/doc/ChangeLog b/doc/ChangeLog
index 24b7490..a3da80c 100644
--- a/doc/ChangeLog
+++ b/doc/ChangeLog
@@ -1,3 +1,130 @@
+2014-05-29 Charlie Zender <zender at uci.edu>
+
+ * NCO 4.4.4 release procedure:
+ Changes since nco-4_4_3: -x tolerance, --rad orphans, CERES, mmr, ncwa msk
+ cd ~/nco;cvs tag -d nco-4_4_4;cvs tag -d nco-4_4_4-1
+ cd ~/nco;cvs commit -m "Preparing nco-4.4.4 release"
+ cvs tag -c nco-4_4_4;cvs tag -c nco-4_4_4-1
+
+2014-05-28 Charlie Zender <zender at uci.edu>
+
+ * Update --mask_condition documentation
+
+2014-05-27 Charlie Zender <zender at uci.edu>
+
+ * Regression test for negative-valued ncwa --mask_condition works
+
+ * Isolated bug: ncap_ncwa_scn() lexing ignores msk_val minus sign in conditions
+ Notes in ncap_lex.l near rules for parsing doubles and long doubles
+ Does same problem exist in ncap2 treatment of conditions with negative numbers?
+
+2014-05-26 Charlie Zender <zender at uci.edu>
+
+ * Start using NC_FILL_STRING
+
+ * Leave ncap (not ncap2) bug found by clang in ncap_lex.l because ncap is deprecated
+
+ * Fix units bug found by clang in nco_aux.c:nco_find_lat_lon()
+
+ * Tidy to quiet clang warnings
+
+2014-05-23 Charlie Zender <zender at uci.edu>
+
+ * ncdismember handles whitespace in group names in ncatted phase
+
+2014-05-21 Charlie Zender <zender at uci.edu>
+
+ * Change ncdismember to use eval so ${opt}=${5} may contain multiple whitespace-separated arguments
+
+ * Implement --grp_xtr_var_xcl for ncdismember. Fixes problems for TES, SMAP data.
+
+2014-05-20 Charlie Zender <zender at uci.edu>
+
+ * Improve ncks -b --bnr --fl_bnr documentation
+
+2014-05-19 Charlie Zender <zender at uci.edu>
+
+ * Tweak chunking for 1D record variables
+
+2014-05-15 Charlie Zender <zender at uci.edu>
+
+ * netCDF 4.3.2 default chunksize of record variables is 1048576 not 1
+ Alter regression tests to not fail with this, eliminate false negatives
+
+2014-05-06 Charlie Zender <zender at uci.edu>
+
+ * Improve HDF4 documentation accuracy and clarity
+
+2014-05-05 Charlie Zender <zender at uci.edu>
+
+ * Free hash table with nco_trv_hsh_del(tbl)
+
+2014-05-04 Charlie Zender <zender at uci.edu>
+
+ * Fix indexing error with flg_dne, flg_dne2
+
+2014-04-23 Charlie Zender <zender at uci.edu>
+
+ * Attempt regular expression parsing in nco_dmn_avg_mk() only when
+ user explicitly specifies dimensions to process. This allows ncwa
+ to work on files with crazy HDF names for dimensions.
+
+ * Clean-up warnings for crazy HDF names
+
+2014-04-22 Charlie Zender <zender at uci.edu>
+
+ * Finish hacks to nco_netcdf.c nco_inq_varid() and nco_def_dim()
+ that allow file translation to work with crazy HDF names.
+
+2014-04-20 Charlie Zender <zender at uci.edu>
+
+ * Update bld/Makefile for Yellowstone configuration changes
+
+2014-04-16 Pedro Vicente <pvicente at uci.edu>
+
+ * nco_prc_cmn_nsm_att() Process (define, write) variables belonging to ensembles in both files (ncbo);
+ special "attribute lookup" ensemble version
+
+2014-04-16 Charlie Zender <zender at uci.edu>
+
+ * Restore former tolerance of -x EXCLUDE_INPUT_LIST for non-existent elements
+ Tolerance was lost in 4.2.x when nco_xtr_mk() replaced older method
+ Thanks to Keith Oleson for this bug report
+
+ * CDL mode prints orphaned dimensions with --rad flag
+
+2014-04-15 Pedro Vicente <pvicente at uci.edu>
+
+ * ncks --rad, --orphan, --rph: Retain all (including orphaned) dimensions
+
+ * nco_rad() Retain all dimensions.
+
+2014-04-13 Charlie Zender <zender at uci.edu>
+
+ * Address Debian bug #744476 by utilizing dh_autoreconf in rules
+
+ * Write nm2sng_nc() to netCDF-ize problematic HDF4 names
+ Replaces slash and leading special characters by underscore
+
+2014-04-12 Charlie Zender <zender at uci.edu>
+
+ * Fix nco_trm_trl_zro() bug which used last zero, if any, in
+ exponent instead last zero after decimal point before exponent.
+ This caused CDL and XML mode to truncate trailing zeros of exponent
+ Hence all CDL and XML printing prior to 4.4.4 mis-prints floating
+ point numbers with exponents +/- 10, 20, 30 ... 200, 210, 220...
+
+ * Hunt for ncks --cdl formatting bug that truncates e-10 exponents...
+
+2014-04-07 Pedro Vicente <pvicente at uci.edu>
+
+ * nco_nsm_att() Inquire if ensemble parent group has "ensemble_source" attribute (ncbo only)
+ This attribute is saved in ncge
+
+2014-04-06 Pedro Vicente <pvicente at uci.edu>
+
+ * Add /doc/README_msvc.txt, Microsoft Windows Visual Studio 2010 (MSVC) build instructions
+
2014-04-01 Charlie Zender <zender at uci.edu>
* NCO 4.4.3 release procedure:
diff --git a/doc/README b/doc/README
index 80a78ad..5f2ee22 100644
--- a/doc/README
+++ b/doc/README
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/README,v 1.18 2013/07/25 04:43:29 zender Exp $ -*-text-*-
+# $Header: /cvsroot/nco/nco/doc/README,v 1.19 2014/05/20 05:53:20 zender Exp $ -*-text-*-
# Purpose: NCO README file
@@ -7,10 +7,10 @@ The netCDF Operators, NCO, are a suite of programs known as operators.
The operators facilitate manipulation and analysis of self-describing
data stored in the freely available netCDF and HDF formats
(http://www.unidata.ucar.edu/packages/netcdf and
-http://hdf.ncsa.uiuc.edu, respectively).
+http://hdfgroup.org, respectively).
Each NCO operator (e.g., ncks) takes netCDF or HDF input file(s),
performs an operation (e.g., averaging, hyperslabbing, or renaming),
-and outputs a processed netCDF file.
+and outputs information, usually a processed netCDF file
Although most users of netCDF and HDF data are involved in scientific
research, these data formats, and thus NCO, are generic and are
equally useful in fields from agriculture to zoology.
diff --git a/doc/README_msvc.txt b/doc/README_msvc.txt
new file mode 100644
index 0000000..84a4f13
--- /dev/null
+++ b/doc/README_msvc.txt
@@ -0,0 +1,79 @@
+Microsoft Windows Visual Studio 2010 (MSVC) build instructions:
+
+Building the NCO source code from within Visual Studio is an easy process, consisting of 2 steps:
+
+1) Define environment variables.
+2) Build the solution.
+
+1) Define environment variables
+
+The Visual Studio NCO solution file (located at /qt/nco.sln) uses 2 types of environment variables:
+
+a) C source file header paths.
+b) NCO dependency libraries.
+
+The minimal requirement to build NCO is the netCDF library. These 2 symbols are defined in the MSVC solution
+and must be defined as enviroment variables
+
+HEADER_NETCDF
+LIB_NETCDF
+
+HEADER_NETCDF defines the location (path) where the netCDF header file is located on your local hard drive.
+This file is called netcdf.h. Note that only the path (without the file name) is defined.
+
+Example
+
+HEADER_NETCDF
+J:\netcdf-c-4.3.1.1\include
+
+LIB_NETCDF defines the absolute name (with path) of the netCDF library (the file is called netcdf.lib), located on your local hard drive.
+Note that here, the file name is included
+
+Example
+
+LIB_NETCDF
+J:\netcdf-c-4.3.1.1\build\liblib\Debug\netcdf.lib
+
+Note:
+
+To define an enviroment variable in Microsoft Windows, do:
+
+1) Go to menu �Start�
+2) Go to menu �Computer�
+3) Right click menu "Properties"
+4) Choose option �Advanced System Settings�
+5) Choose option �Environment Variables�
+6) Choose "New" button on the section "System Variables"
+7) Enter a pair name, value
+
+From the previous example, a name would be
+HEADER_NETCDF
+with value
+J:\netcdf-c-4.3.1.1\include
+
+Note: You�ll have to exit Visual Studio and open the project again so that these values are detected by MSVC.
+
+Building ncap2
+
+ncpa2 requires 2 additional libraries, Antlr, and gsl.
+
+Define these environment variables (examples follow)
+
+HEADER_ANTLR
+J:\antlr-2.7.7\lib\cpp
+
+LIB_ANTLR
+J:\antlr-2.7.7\lib\cpp\debug\antlr.lib
+
+HEADER_GSL
+J:\gsl-1.8\src\gsl\1.8\gsl-1.8
+
+LIB_GSL
+J:\gsl-1.8\src\gsl\1.8\gsl-1.8\VC8\libgsl\Debug-StaticLib\libgsl_d.lib
+
+
+
+
+
+
+
diff --git a/doc/TAG b/doc/TAG
index abd3a5d..e501165 100644
--- a/doc/TAG
+++ b/doc/TAG
@@ -1 +1 @@
-$Name: nco-4_4_3 $
+$Name: nco-4_4_4 $
diff --git a/doc/TODO b/doc/TODO
index 91460c5..592418b 100644
--- a/doc/TODO
+++ b/doc/TODO
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/TODO,v 1.1262 2014/02/18 17:44:07 zender Exp $
+$Header: /cvsroot/nco/nco/doc/TODO,v 1.1265 2014/05/27 02:55:26 zender Exp $
# Purpose: TODO items for NCO
@@ -425,7 +425,6 @@ nco834. Add atomic type string NC_STRING to nco_c++ get/put var
nco835. ncks: uint64_var(ULLONG_MAX) = int64_var(LLONG_MAX) (problem with libnetcdf4?) PBN4
ccc
ncks -v '.?_var$' ~/c++/foo.nc
-nco839. What, if anything, should NC_FILL_STRING be?
nco845. Add -Wno-switch to quiet GCC enum warnings on netCDF4 case labels?
nco846. netCDF4: switch to long long array offsets everywhere?
e.g., can long tally hold > 2 GB array?
@@ -651,10 +650,10 @@ nco1102. ncatted handle arrays of NC_STRINGs with embedded delimiters
nco1104. ncrename and ncatted copy through API with --hdf4
nco1106. autoconvert netCDF4 string variable to netCDF3 nc_char type. requires dummy dimension for NC_CHAR array length
ncks -O -G : -g /g11/ -v string_var -3 ~/nco/data/in_grp.nc ~/foo.nc
-nco1107. add switch to retain dimensions no longer referenced?
-nco1108. add switch to retain dimensions no longer referenced?
nco1109. broadcast degenerate dimensions in nco_var_cnf_dmn()/ncap_var_cnf_dmn(): helps ncap/ncwa/ncbo/ncflint
-nco1110.
+nco1110. ncap2: allow type specification as per christine smit (GSFC) request 20140407
+nco1111. ncrcat/ncecat check consistency of packing attributes across files (requested by ocehugo 20140522)
+nco1112.
qrk
************************************************************************
End ncoXXX TODOs
diff --git a/doc/VERSION b/doc/VERSION
index f0f76fb..f15ec04 100644
--- a/doc/VERSION
+++ b/doc/VERSION
@@ -1 +1 @@
-4.4.3
\ No newline at end of file
+4.4.4
\ No newline at end of file
diff --git a/doc/debian.txt b/doc/debian.txt
index 9f8c239..6dd0a17 100644
--- a/doc/debian.txt
+++ b/doc/debian.txt
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/debian.txt,v 1.201 2014/04/02 05:40:24 zender Exp $ -*-text-*-
+# $Header: /cvsroot/nco/nco/doc/debian.txt,v 1.202 2014/05/01 19:05:39 zender Exp $ -*-text-*-
# Purpose: Debian information for NCO netCDF Operators project
# Notes describe procedure to manipulate Debian-specific distribution
@@ -29,19 +29,19 @@ apt-get install dh-make debhelper devscripts fakeroot gnupg debian-policy develo
2. Debian build procedure recommends placing entire package source in
subdirectory of main package.
- For starters, we wish to create .debs of tagged releases, e.g., nco-4.4.3
- First we create a clean source distribution of nco and place it in nco-4.4.3
- Once automated, we will use cvs co -rnco-4_4_3 to get source
+ For starters, we wish to create .debs of tagged releases, e.g., nco-4.4.4
+ First we create a clean source distribution of nco and place it in nco-4.4.4
+ Once automated, we will use cvs co -rnco-4_4_4 to get source
Until we know what is necessary, however, we just copy a snapshot
2.1 Clean all build files from development directory
cd ~/nco;make distclean;cd bld;make clean;cd ~
tar cvzf ./nco/nco.tar.gz ./nco/*
-cd ~/nco;tar xvzf nco.tar.gz;mv nco nco-4.4.3
-/bin/rm nco.tar.gz;tar cvzf nco-4.4.3.tar.gz ./nco-4.4.3/*
-cd ~/nco/nco-4.4.3
-dh_make -e zender at uci.edu -f ../nco-4.4.3.tar.gz
+cd ~/nco;tar xvzf nco.tar.gz;mv nco nco-4.4.4
+/bin/rm nco.tar.gz;tar cvzf nco-4.4.4.tar.gz ./nco-4.4.4/*
+cd ~/nco/nco-4.4.4
+dh_make -e zender at uci.edu -f ../nco-4.4.4.tar.gz
2.2 The preceding steps created template debian files for a .deb,
Those files now reside in ~/nco/debian.
@@ -56,7 +56,7 @@ dh_make -e zender at uci.edu -f ../nco-4.4.3.tar.gz
from previous build
cd ~/nco;/bin/rm *.gz
- cd ~/nco/nco-4.4.3
+ cd ~/nco/nco-4.4.4
dpkg-buildpackage -rfakeroot > foo 2>&1
dpkg-buildpackage -rsudo > foo 2>&1
@@ -85,12 +85,12 @@ patch -p0 < nco_X.Y.Z-3.diff # Patch destination with Debian diff
make tags
# Put cute version-specific string in nco_ctl.c:nco_nmn_get()
# Install correct version numbers before updating Debian
-# tags-query replace 4_4_3 with X_Y_Z+1
-# tags-query replace 4.4.3 with X.Y.Z+1
+# tags-query replace 4_4_4 with X_Y_Z+1
+# tags-query replace 4.4.4 with X.Y.Z+1
# If tags-query replace does not work, be sure to manually change
# versions in configure.ac, debian/files, doc/ANNOUNCE, doc/debian.txt,
# doc/index.shtml, doc/nco.texi, bld/nco_dst.pl, doc/VERSION
- cd ~/nco/debian;dch -b --force-distribution --distribution=unstable -v 4.4.3-1 # Update changelog (-b forces this version number)
+ cd ~/nco/debian;dch -b --force-distribution --distribution=unstable -v 4.4.4-1 # Update changelog (-b forces this version number)
emacs ~/nco/bld/nco.spec # Update changelog
# For unknown reason rules file may lose its executable bit
chmod a+x ~/nco/debian/rules
@@ -98,22 +98,22 @@ patch -p0 < nco_X.Y.Z-3.diff # Patch destination with Debian diff
cd ~/nco;aclocal;autoheader;automake --foreign;autoconf
# Save all files in emacs before tagging
# Tag CVS code after changing files in ~/nco/debian
- cd ~/nco;cvs commit -m "Preparing nco-4.4.3 release";cvs tag -c nco-4_4_3
- ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_3
+ cd ~/nco;cvs commit -m "Preparing nco-4.4.4 release";cvs tag -c nco-4_4_4
+ ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_4
# Upload tarball to SF https://sourceforge.net/projects/nco/files
- cd;scp dust.ess.uci.edu:/var/www/html/nco/src/nco-4.4.3.tar.gz .
+ cd;scp dust.ess.uci.edu:/var/www/html/nco/src/nco-4.4.4.tar.gz .
7. Ubuntu PPA
https://help.launchpad.net/Packaging/PPA
-dput NCO nco_4.4.3-2~ppa1_source.changes
+dput NCO nco_4.4.4-2~ppa1_source.changes
sudo apt-key adv --recv-keys --keyserver keyserver.ubuntu.com
# Location of build diagnostics for mentors to help
-http://dust.ess.uci.edu/nco/src/nco_4.4.3-1.dpkg-buildpackage.txt
-http://dust.ess.uci.edu/nco/src/nco_4.4.3-1.dsc
-http://dust.ess.uci.edu/nco/src/nco_4.4.3-1_i386.changes
-http://dust.ess.uci.edu/nco/src/nco_4.4.3-1_i386.deb
-http://dust.ess.uci.edu/nco/src/nco_4.4.3.orig.tar.gz
+http://dust.ess.uci.edu/nco/src/nco_4.4.4-1.dpkg-buildpackage.txt
+http://dust.ess.uci.edu/nco/src/nco_4.4.4-1.dsc
+http://dust.ess.uci.edu/nco/src/nco_4.4.4-1_i386.changes
+http://dust.ess.uci.edu/nco/src/nco_4.4.4-1_i386.deb
+http://dust.ess.uci.edu/nco/src/nco_4.4.4.orig.tar.gz
# Becoming a Debian developer
http://www.debian.org/devel/join/newmaint
@@ -167,31 +167,31 @@ Matej Vela <vela at debian.org>, Daniel Baumann <daniel at debian.org>, Warren Turkal
# export LD_LIBRARY_PATH=/usr/lib:/lib:/usr/X11R6/lib
# sudo aptitude install antlr bison flex gsl-bin libgsl0-dev libantlr-dev netcdf-bin libnetcdfc7 libnetcdf-dev texinfo libcurl4-gnutls-dev libexpat1-dev libxml2-dev udunits-bin libudunits2-0 libudunits2-dev
cd ~/nco;cvc
-sudo /bin/rm -rf ${DATA}/nco-4.4.3 ${DATA}/nco_4.4.3* ${DATA}/debian # Cleanup last build. sudo necessary for removal because dpkg-buildpackage uses sudo?
-# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_3-1 -d nco-4.4.3 nco # Export based on tag
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -d nco-4.4.3 nco # Export most recent
-tar cvzf ./nco_4.4.3.orig.tar.gz --exclude='nco-4.4.3/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.3
-/bin/rm -rf ${DATA}/nco-4.4.3 # Remove cvs-exported directory
-tar xvzf ./nco_4.4.3.orig.tar.gz # Untar to get directory without excluded files
-mkdir -p ${DATA}/nco-4.4.3/debian/source;cd ~/nco/debian;/bin/cp changelog compat control convert copyright doc-base files info rules ${DATA}/nco-4.4.3/debian;cd ~/nco/debian/source;/bin/cp format ${DATA}/nco-4.4.3/debian/source # Replace debian directory with _CURRENT_ (main trunk) settings
+sudo /bin/rm -rf ${DATA}/nco-4.4.4 ${DATA}/nco_4.4.4* ${DATA}/debian # Cleanup last build. sudo necessary for removal because dpkg-buildpackage uses sudo?
+# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_4-1 -d nco-4.4.4 nco # Export based on tag
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -d nco-4.4.4 nco # Export most recent
+tar cvzf ./nco_4.4.4.orig.tar.gz --exclude='nco-4.4.4/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.4
+/bin/rm -rf ${DATA}/nco-4.4.4 # Remove cvs-exported directory
+tar xvzf ./nco_4.4.4.orig.tar.gz # Untar to get directory without excluded files
+mkdir -p ${DATA}/nco-4.4.4/debian/source;cd ~/nco/debian;/bin/cp changelog compat control convert copyright doc-base files info rules ${DATA}/nco-4.4.4/debian;cd ~/nco/debian/source;/bin/cp format ${DATA}/nco-4.4.4/debian/source # Replace debian directory with _CURRENT_ (main trunk) settings
#export DEB_BUILD_OPTIONS='disable-dap-netcdf disable-netcdf4 disable-udunits2'; # Disable optional packages based on available Debian support
-#cd ${DATA}/nco-4.4.3;dpkg-buildpackage -rsudo -uc -us > ~/foo.nco 2>&1 # -uc -us: Do not sign changes or source files
-#cd ${DATA}/nco-4.4.3;dpkg-buildpackage -rsudo -sa > ~/foo.nco 2>&1 # -sa: Include _orig.tar.gz in .changes
-cd ${DATA}/nco-4.4.3;dpkg-buildpackage -rsudo > ~/foo.nco 2>&1
+#cd ${DATA}/nco-4.4.4;dpkg-buildpackage -rsudo -uc -us > ~/foo.nco 2>&1 # -uc -us: Do not sign changes or source files
+#cd ${DATA}/nco-4.4.4;dpkg-buildpackage -rsudo -sa > ~/foo.nco 2>&1 # -sa: Include _orig.tar.gz in .changes
+cd ${DATA}/nco-4.4.4;dpkg-buildpackage -rsudo > ~/foo.nco 2>&1
sudo dpkg --remove nco
-sudo dpkg --install ${DATA}/nco_4.4.3-1_*.deb
+sudo dpkg --install ${DATA}/nco_4.4.4-1_*.deb
cd ~/nco/bld;MY_BIN_DIR=/usr/bin ../bm/nco_bm.pl --regress
# http://lintian.debian.org/full/zender@uci.edu.html
-lintian ${DATA}/nco_4.4.3-1_*.deb
-ls -l ${DATA}/nco_4.4.3*
+lintian ${DATA}/nco_4.4.4-1_*.deb
+ls -l ${DATA}/nco_4.4.4*
m ~/foo.nco
# Upload Ubuntu (rather than Debian) packages to websites
-scp ${DATA}/nco_4.4.3* dust.ess.uci.edu:/var/www/html/nco/src
-scp ${DATA}/nco_4.4.3* zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+scp ${DATA}/nco_4.4.4* dust.ess.uci.edu:/var/www/html/nco/src
+scp ${DATA}/nco_4.4.4* zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# NB: Make sure RPMs build before uploading to debian, since changing
# Debian versions is a PITA
# NB: Only upload pbuilder Debian Sid (not personal Ubuntu) .deb builds to Debian mentors
-# cd ${DATA};dupload -t mentors nco_4.4.3-1_*.changes
+# cd ${DATA};dupload -t mentors nco_4.4.4-1_*.changes
bsrc # Reset shell environment for regular development
# New build system #2
@@ -205,52 +205,52 @@ DIST=sid sudo pbuilder update # Update chroot before building package in it
# dget http://ftp.debian.org/debian/pool/main/n/nco/nco_3.9.0-1.dsc
# dget http://ftp.debian.org/debian/pool/main/n/netcdf/netcdf_3.6.1-1.dsc
# apt-get source nco # Get package source
-sudo /bin/rm /var/cache/pbuilder/result/nco_4.4.3* # Cleanup prior build
+sudo /bin/rm /var/cache/pbuilder/result/nco_4.4.4* # Cleanup prior build
# To pass DEB_BUILD_OPTIONS to pbuilder while using sudo, one must first
# modify sudoers with visudo to prevent sudo from resetting environment
#export DEB_BUILD_OPTIONS='disable-dap-netcdf disable-netcdf4 disable-udunits2'; # Disable optional packages based on available Debian support
-cd ${DATA};DIST=sid sudo pbuilder build nco_4.4.3-1.dsc > ~/foo.nco.pbuilder 2>&1
-cd /var/cache/pbuilder/result;debsign -k6F635D10 nco_4.4.3-1_*.changes
-lintian /var/cache/pbuilder/result/nco_4.4.3-1_*.deb
+cd ${DATA};DIST=sid sudo pbuilder build nco_4.4.4-1.dsc > ~/foo.nco.pbuilder 2>&1
+cd /var/cache/pbuilder/result;debsign -k6F635D10 nco_4.4.4-1_*.changes
+lintian /var/cache/pbuilder/result/nco_4.4.4-1_*.deb
sudo dpkg --remove nco
-sudo dpkg --install /var/cache/pbuilder/result/nco_4.4.3-1_*.deb
+sudo dpkg --install /var/cache/pbuilder/result/nco_4.4.4-1_*.deb
cd ~/nco/bld;MY_BIN_DIR=/usr/bin ../bm/nco_bm.pl --regress
# NB: Upload pbuilder Debian Sid packages to Debian mentors, but not
# to personal or NCO websites since most people use Ubuntu not Debian
# NB: Debian versions are a PITA, ensure RPMs build before uploading to Debian
-cd /var/cache/pbuilder/result;dupload -t mentors nco_4.4.3-1_*.changes
+cd /var/cache/pbuilder/result;dupload -t mentors nco_4.4.4-1_*.changes
# RPM builds as root
export rpm_root='/usr/src/redhat'
# export sudo_sng='' # sudo not-necessary when builing in user directories
export sudo_sng='sudo' # sudo necessary when building in system directories
cd ~/nco;cvc;cvu
-/bin/rm -rf ${DATA}/nco-4.4.3 ${DATA}/nco-4.4.3* # Cleanup last build
+/bin/rm -rf ${DATA}/nco-4.4.4 ${DATA}/nco-4.4.4* # Cleanup last build
${sudo_sng} /bin/rm -r -f \
-${rpm_root}/BUILD/nco-4.4.3 \
-${rpm_root}/RPMS/i386/nco-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.3-?.i386.rpm \
-${rpm_root}/SOURCES/nco-4.4.3.tar.gz \
-${rpm_root}/SPECS/nco-4.4.3.spec \
-${rpm_root}/SRPMS/nco-4.4.3-?.src.rpm
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_3-1 -d nco-4.4.3 nco # Export based on tag
-${sudo_sng} ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/SPECS/nco-4.4.3.spec
-tar cvzf ./nco-4.4.3.tar.gz --exclude='nco-4.4.3/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.3
-${sudo_sng} /bin/cp ${DATA}/nco-4.4.3.tar.gz ${rpm_root}/SOURCES
+${rpm_root}/BUILD/nco-4.4.4 \
+${rpm_root}/RPMS/i386/nco-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.4.4-?.i386.rpm \
+${rpm_root}/SOURCES/nco-4.4.4.tar.gz \
+${rpm_root}/SPECS/nco-4.4.4.spec \
+${rpm_root}/SRPMS/nco-4.4.4-?.src.rpm
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_4-1 -d nco-4.4.4 nco # Export based on tag
+${sudo_sng} ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/SPECS/nco-4.4.4.spec
+tar cvzf ./nco-4.4.4.tar.gz --exclude='nco-4.4.4/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.4
+${sudo_sng} /bin/cp ${DATA}/nco-4.4.4.tar.gz ${rpm_root}/SOURCES
cd ${rpm_root}/SPECS
-${sudo_sng} rpmbuild -ba --sign nco-4.4.3.spec > ~/foo.nco 2>&1
+${sudo_sng} rpmbuild -ba --sign nco-4.4.4.spec > ~/foo.nco 2>&1
scp \
-${rpm_root}/RPMS/i386/nco-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.3-?.i386.rpm \
-${rpm_root}/SRPMS/nco-4.4.3-?.src.rpm \
+${rpm_root}/RPMS/i386/nco-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.4.4-?.i386.rpm \
+${rpm_root}/SRPMS/nco-4.4.4-?.src.rpm \
dust.ess.uci.edu:/var/www/html/nco/src
scp \
-${rpm_root}/RPMS/i386/nco-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.3-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.3-?.i386.rpm \
-${rpm_root}/SRPMS/nco-4.4.3-?.src.rpm \
+${rpm_root}/RPMS/i386/nco-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.4.4-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.4.4-?.i386.rpm \
+${rpm_root}/SRPMS/nco-4.4.4-?.src.rpm \
zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# RPM builds as user
@@ -259,33 +259,33 @@ zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
export rpm_root="${DATA}/rpm/nco"
#cd ~/nco;cvc;cvu # This risks committing unwanted *.[ch]pp files
mkdir -p ${DATA}/rpm/nco/TMP ${DATA}/rpm/nco/BUILD
-/bin/rm -rf ${DATA}/nco-4.4.3 ${DATA}/nco-4.4.3* # Cleanup last build
+/bin/rm -rf ${DATA}/nco-4.4.4 ${DATA}/nco-4.4.4* # Cleanup last build
/bin/rm -r -f \
-${rpm_root}/nco-4.4.3-?.src.rpm \
-${rpm_root}/nco-4.4.3.spec \
-${rpm_root}/nco-4.4.3.tar.gz \
-${rpm_root}/*/nco-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.3-?.*.rpm
-# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_3-1 -d nco-4.4.3 nco # Export based on tag
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -dnco-4.4.3 nco # Export most recent and build as 4.4.3-1
-tar cvzf ./nco-4.4.3.tar.gz --exclude='nco-4.4.3/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.3
-/bin/cp ${DATA}/nco-4.4.3.tar.gz ${rpm_root}
+${rpm_root}/nco-4.4.4-?.src.rpm \
+${rpm_root}/nco-4.4.4.spec \
+${rpm_root}/nco-4.4.4.tar.gz \
+${rpm_root}/*/nco-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-devel-4.4.4-?.*.rpm
+# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_4-1 -d nco-4.4.4 nco # Export based on tag
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -dnco-4.4.4 nco # Export most recent and build as 4.4.4-1
+tar cvzf ./nco-4.4.4.tar.gz --exclude='nco-4.4.4/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.4
+/bin/cp ${DATA}/nco-4.4.4.tar.gz ${rpm_root}
ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/nco.spec
cd ${rpm_root}
rpmbuild -ba --sign nco.spec > ~/foo.nco 2>&1
-rpmlint ${rpm_root}/*/nco-4.4.3-?.*.rpm
+rpmlint ${rpm_root}/*/nco-4.4.4-?.*.rpm
sudo yum remove nco
-sudo yum install ${rpm_root}/*/nco-4.4.3-?.*.rpm
+sudo yum install ${rpm_root}/*/nco-4.4.4-?.*.rpm
scp \
-${rpm_root}/*/nco-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.3-?.*.rpm \
-${rpm_root}/nco-4.4.3-?.*.src.rpm \
+${rpm_root}/*/nco-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-devel-4.4.4-?.*.rpm \
+${rpm_root}/nco-4.4.4-?.*.src.rpm \
dust.ess.uci.edu:/var/www/html/nco/src
scp \
-${rpm_root}/*/nco-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.3-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.3-?.*.rpm \
-${rpm_root}/nco-4.4.3-?.*.src.rpm \
+${rpm_root}/*/nco-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.4.4-?.*.rpm \
+${rpm_root}/*/nco-devel-4.4.4-?.*.rpm \
+${rpm_root}/nco-4.4.4-?.*.src.rpm \
zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
diff --git a/doc/index.shtml b/doc/index.shtml
index 2c9778a..8ea386d 100644
--- a/doc/index.shtml
+++ b/doc/index.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/index.shtml,v 1.879 2014/04/02 05:40:24 zender Exp $
+<!-- $Header: /cvsroot/nco/nco/doc/index.shtml,v 1.883 2014/05/29 18:19:54 zender Exp $
Purpose: NCO homepage
URL:
@@ -68,7 +68,7 @@ Try to disable Spammers' machines:
<p><h1 align="center">Welcome to the netCDF Operator (NCO) Homepage</h1>
<p><h2>
-Current NCO version is 4.4.3 last updated on <!--#flastmod file="VERSION"-->
+Current NCO version is 4.4.4 last updated on <!--#flastmod file="VERSION"-->
</h2>
<table border=0 width=100%>
@@ -147,7 +147,8 @@ and
<h2>NCO Milestones</h2>
<ul>
-<li>2014 Apr ??: NCO 4.4.4 (<i>In progress</i>)
+<li>2014 Jun ??: NCO 4.4.5 (<i>In progress</i>)
+<li>2014 May 29: NCO 4.4.4 (Stability)
<li>2014 Apr 02: NCO 4.4.3 (Stability)
<li>2014 Mar 27: NCO <a href="http://dust.ess.uci.edu/smn/smn_nco_gsfc_201403.pdf">Talk</a> at NASA GSFC, Greenbelt, Maryland</li>
<li>2014 Mar 25: NCO <a href="http://dust.ess.uci.edu/smn/pst_nco_esds_201403.pdf">Poster</a> for NASA ESDSWG, Greenbelt, Maryland</li>
@@ -620,14 +621,19 @@ Releases receive unique CVS tags and their tarballs are stored
You can also retrieve the source of tagged versions directly
<a name="#Source">with CVS</a>.
<ul>
-<li><b>NCO 4.4.5</b>: (<i>Future</i>)
+<li><b>NCO 4.4.6</b>: (<i>Future</i>)
extensive hashing?;
netCDF4 compound types?;
Optimize diskless files?;</li>
-<li><b>NCO 4.4.4</b>: (<i>In Progress, features completed or being worked on include</i>)
-<tt>cnk_map=rew</tt>;
+<li><b>NCO 4.4.5</b>: (<i>In Progress, features completed or being worked on include</i>)
+Chunking <tt>cnk_map=rew</tt>;
<a href="http://nco.sf.net/nco.html#cnk">Chunking</a> bytes not elements, caching;</li>
-<li><b>NCO 4.4.3</b>: (<i>Current Stable Release</i>)
+<li><b>NCO 4.4.4</b>: (<i>Current Stable Release</i>)
+netCDF'ize non-compliant element names;
+<tt>-x var</tt> tolerates non-existence;
+<tt>--rad</tt> <a href="http://nso.sf.net/nco.html#rad">orphan dimensions</a>;
+<tt>ncwa --mask_condition</tt> <a href="#bug_ncwa_mask_condition">bugfix</a></li>
+<li><b>NCO 4.4.3</b>:
Faster DAP access to strided data;
<a href="http://nco.sf.net/nco.html#grp_brd">Group broadcasting</a> for ensembles;
<li><b>NCO 4.4.2</b>:
@@ -956,7 +962,7 @@ Thanks to NSF for supporting AIX machines at NCAR over the years.
<h3><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux</a></h3>
<ul>
<!--
-<li><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux-compatible Intel systems, prebuilt binary executable <a href="http://www.debian.org">deb</a>: <a href="http://packages.debian.org/testing/math/nco.html">nco-4.4.3</a></li>
+<li><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux-compatible Intel systems, prebuilt binary executable <a href="http://www.debian.org">deb</a>: <a href="http://packages.debian.org/testing/math/nco.html">nco-4.4.4</a></li>
-->
<a href="http://packages.debian.org/unstable/science/nco">Debian NCO</a> and
<a href="http://packages.ubuntu.com/natty/nco">Ubuntu NCO</a> homepages.
@@ -964,12 +970,12 @@ Thanks to NSF for supporting AIX machines at NCAR over the years.
NCO packages in the Debian/Ubuntu repositories (i.e., Sid and Raring) generally lag the packages distributed here by 6–12 months.
<a name="beta"></a><a name="prerelease"> <!-- http://nco.sf.net#beta -->
Newer (beta- or pre-release) packages are often available for intrepid Debian/Ubuntu users as described <a href="http://nco.cvs.sf.net/nco/nco/doc/beta.txt">here</a>.
-<dt>Debian package for most recent NCO release (install with, e.g., ‘<tt>dpkg --install nco_4.4.3-1_i386.deb</tt>’):</dt>
-<li><a href="src/nco_4.4.3-1_amd64.deb">nco_4.4.3-1_amd64.deb</a> (<!--#fsize file="src/nco_4.4.3-1_amd64.deb"-->): Executables AMD64-compatible (last updated <!--#flastmod file="src/nco_4.4.3-1_amd64.deb"-->)</li>
-<li><a href="src/nco_4.4.3-1.dsc">nco_4.4.3-1.dsc</a> (<!--#fsize file="src/nco_4.4.3-1.dsc"-->): Description (last updated <!--#flastmod file="src/nco_4.4.3-1.dsc"-->)</li>
-<li><a href="src/nco_4.4.3-1_amd64.changes">nco_4.4.3-1_amd64.changes</a> (<!--#fsize file="src/nco_4.4.3-1_amd64.changes"-->): Changes since last deb package (last updated <!--#flastmod file="src/nco_4.4.3-1_amd64.changes"-->)</li>
-<li><a href="src/nco_4.4.3.orig.tar.gz">nco_4.4.3.orig.tar.gz</a> (<!--#fsize file="src/nco_4.4.3.orig.tar.gz"-->): Upstream Source (last updated <!--#flastmod file="src/nco_4.4.3.orig.tar.gz"-->)</li>
-<li><a href="src/nco_4.4.3-1.diff.gz">nco_4.4.3-1.diff.gz</a> (<!--#fsize file="src/nco_4.4.3-1_amd64.changes"-->): Debian patch to upstream source (last updated <!--#flastmod file="src/nco_4.4.3-1_amd64.changes"-->)</li>
+<dt>Debian package for most recent NCO release (install with, e.g., ‘<tt>dpkg --install nco_4.4.4-1_i386.deb</tt>’):</dt>
+<li><a href="src/nco_4.4.4-1_amd64.deb">nco_4.4.4-1_amd64.deb</a> (<!--#fsize file="src/nco_4.4.4-1_amd64.deb"-->): Executables AMD64-compatible (last updated <!--#flastmod file="src/nco_4.4.4-1_amd64.deb"-->)</li>
+<li><a href="src/nco_4.4.4-1.dsc">nco_4.4.4-1.dsc</a> (<!--#fsize file="src/nco_4.4.4-1.dsc"-->): Description (last updated <!--#flastmod file="src/nco_4.4.4-1.dsc"-->)</li>
+<li><a href="src/nco_4.4.4-1_amd64.changes">nco_4.4.4-1_amd64.changes</a> (<!--#fsize file="src/nco_4.4.4-1_amd64.changes"-->): Changes since last deb package (last updated <!--#flastmod file="src/nco_4.4.4-1_amd64.changes"-->)</li>
+<li><a href="src/nco_4.4.4.orig.tar.gz">nco_4.4.4.orig.tar.gz</a> (<!--#fsize file="src/nco_4.4.4.orig.tar.gz"-->): Upstream Source (last updated <!--#flastmod file="src/nco_4.4.4.orig.tar.gz"-->)</li>
+<li><a href="src/nco_4.4.4-1.diff.gz">nco_4.4.4-1.diff.gz</a> (<!--#fsize file="src/nco_4.4.4-1_amd64.changes"-->): Debian patch to upstream source (last updated <!--#flastmod file="src/nco_4.4.4-1_amd64.changes"-->)</li>
Thanks to Daniel Baumann, Barry deFreese, Francesco Lovergine,
Brian Mays, Rorik Peterson, and Matej Vela for their help packaging
NCO for Debian over the years.
@@ -1014,7 +1020,7 @@ Thanks to Gavin Burris and Kyle Wilcox for documenting build procedures for RHEL
<ul>
<!--
/usr/bin/scp /home/pvicente/nco/doc/index.shtml pvicente,nco at web.sf.net:/home/project-web/nco/htdocs
-/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.3.macosx.10.9.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
+/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.4.macosx.10.9.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
-->
The most up-to-date binaries are probably those in the tarball below. Those unfamiliar with installing executables from tarballs may try the (older) <a href="http://en.wikipedia.org/wiki/Apple_Disk_Image">DMG</a> files (you may need to add <tt>/opt/local/bin</tt> to your executable path to access those operators).
<li><a href="src/nco-4.4.2.macosx.10.9.tar.gz">nco-4.4.2.macosx.10.9.tar.gz</a> (<!--#fsize file="src/nco-4.4.2.macosx.10.9.tar.gz"-->): Executables MacOSX 10.9-compatible (last updated <!--#flastmod file="src/nco-4.4.2.macosx.10.9.tar.gz"-->).
@@ -1042,9 +1048,9 @@ To build NCO from source yourself using MSVC or Qt, please see the <a href="nco_
<ul>
<!-- Copy files from http://glace.ess.uci.edu
/usr/bin/scp /home/pvicente/nco/doc/index.shtml pvicente,nco at web.sf.net:/home/project-web/nco/htdocs
-/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.3.windows.mvs.exe pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
-/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.3.win32.cygwin.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
-/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.3.macosx.10.9.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
+/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.4.windows.mvs.exe pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
+/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.4.win32.cygwin.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
+/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.4.macosx.10.9.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
-->
<li><a href="src/nco-4.4.2.windows.mvs.exe">nco-4.4.2.windows.mvs.exe</a> (<!--#fsize file="src/nco-4.4.2.windows.mvs.exe"-->) : Windows Self-Extracting Installer (last updated <!--#flastmod file="src/nco-4.4.2.windows.mvs.exe"-->). Maintained by NCO Project.</li>
</ul>
@@ -1179,10 +1185,10 @@ The best way to acquire NCO sources is with <a href="http://www.cvshome.org">CVS
The second best way is to download the source as a compressed tarfile:
<ul>
<li>
-<a href="src/nco-4.4.3.tar.gz">nco-4.4.3.tar.gz</a>
-(<!--#fsize file="src/nco-4.4.3.tar.gz"--> compressed tar-file)<br>
-<!--#exec cmd="openssl dgst -md5 src/nco-4.4.3.tar.gz"--><br>
-<!--#exec cmd="openssl dgst -sha1 src/nco-4.4.3.tar.gz"-->
+<a href="src/nco-4.4.4.tar.gz">nco-4.4.4.tar.gz</a>
+(<!--#fsize file="src/nco-4.4.4.tar.gz"--> compressed tar-file)<br>
+<!--#exec cmd="openssl dgst -md5 src/nco-4.4.4.tar.gz"--><br>
+<!--#exec cmd="openssl dgst -sha1 src/nco-4.4.4.tar.gz"-->
</li>
</ul>
@@ -1205,19 +1211,19 @@ Hit <tt>return</tt> when asked for the CVS password.
This login procedure is only required the first time you access the CVS server.
Then you may retrieve any NCO distribution you wish.
Usually you wish to retrieve a recent tagged (i.e., released) version.
-This command retrieves and places NCO version <tt>4.4.3</tt> (which is
-tagged as <tt>nco-4_4_3</tt> due to CVS rules) into local directory
-<tt>nco-4.4.3</tt>:
-<p><tt>cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4_4_3 -d nco-4.4.3 nco</tt></p>
+This command retrieves and places NCO version <tt>4.4.4</tt> (which is
+tagged as <tt>nco-4_4_4</tt> due to CVS rules) into local directory
+<tt>nco-4.4.4</tt>:
+<p><tt>cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4_4_4 -d nco-4.4.4 nco</tt></p>
This command retrieves the current (“bleeding edge”)
development version of NCO into a local directory named <tt>nco</tt>:
<p><tt>cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -kk nco</tt></p>
Track changes to the development version using
<p><tt>cd nco;cvs update -kk</tt></p>
One difference between running a "tagged" release
-(e.g., <tt>nco-4_4_3</tt>) and the development version is that the
+(e.g., <tt>nco-4_4_4</tt>) and the development version is that the
tagged release operators will print a valid version number (e.g.,
-<tt>4.4.3</tt>) when asked to do so with the <tt>-r</tt> flag
+<tt>4.4.4</tt>) when asked to do so with the <tt>-r</tt> flag
(e.g., <tt>ncks -r</tt>).
The development version simply places today's date in place of the
version.
@@ -1330,7 +1336,7 @@ For Mac OS X with MacPorts:
<tt>
<dt>wget http://dust.ess.uci.edu/nco/nco.tar.gz</dt>
<dt>tar xvzf nco.tar.gz</dt>
-<dt>cd nco-4.4.3</dt>
+<dt>cd nco-4.4.4</dt>
<dt>./configure --prefix=/usr/local</dt>
<dt>make</dt>
<dt>sudo make install</dt>
@@ -1752,6 +1758,24 @@ in NCO 4.0.9, which assumes that netCDF 4.1.3 or later is installed.
<ul><b>Recent Operator-specific Run-time Problems:</b>
+<!-- http://nco.sf.net#bug_ncwa_mask_condition -->
+<a name="bug_ncwa_mask_condition"></a>
+<li><i><tt>ncwa</tt> mask condition bug:</i>
+All versions through 4.4.3 of <tt>ncwa</tt> could return incorrect
+mask values for negative numbers.
+Thanks to Keith Lindsay for report, and to Henry Butowsky for fix.
+Prior to this fix, the <tt>ncwa lexer</tt> would drop the negative
+sign, if any, from the comparators appearing in the mask condition,
+e.g., <tt>ncwa --mask_condition "lat < -20"</tt> was parsed as
+<tt>"lat < 20"</tt> not <tt>"lat < -20"</tt>.
+Hence, users of <tt>ncwa --mask_condition</tt> (or of <tt>-B</tt>)
+should upgrade. NB: The <tt>-m -M -T</tt> form of <tt>ncwa</tt>
+masking is/was not buggy.
+Thus the workaround is to use the <tt>-m -M -T</tt> form
+of <tt>ncwa</tt> masking, while the long-term solution is to upgrade
+to NCO 4.4.4.
+</li>
+
<!-- http://nco.sf.net#bug_ncra_no_fl_close -->
<a name="bug_ncra_no_fl_close"></a>
<li><i><tt>ncra</tt>, <tt>ncea</tt>, and <tt>ncrcat</tt> file close bug:</i>
@@ -1766,10 +1790,9 @@ would fail when processing more than 256 files at a time).
This is embarassing because NCO has always been designed to work with
arbitrary numbers of input files and we want power users to be
comfortable running it on hundreds of thousands of input files.
-The solution is to avoid versions 4.3.9—4.4.0 or to upgrade to
-NCO 4.4.1.
+The workaround is to avoid versions 4.3.9—4.4.0, while the
+long-term solution is to upgrade to NCO 4.4.1.
</li>
-</ul>
<!-- http://nco.sf.net#bug_ncra_mro_mss_val -->
<a name="bug_ncra_mro_mss_val"></a>
@@ -1785,7 +1808,6 @@ The workaround is to run the affected versions of ncra using the
are not promoted prior to arithmetic.
The solution is to upgrade to NCO 4.4.0.
</li>
-</ul>
<!-- http://nco.sf.net#bug_ncwa_lmt -->
<a name="bug_ncwa_lmt"></a>
@@ -1799,7 +1821,6 @@ by simultaneously invoking <tt>-a</tt> and <tt>-d</tt> switches);
“global averages” were unaffected.
We urge all <tt>ncwa</tt> users to upgrade to NCO 4.3.6.
</li>
-</ul>
<!-- http://nco.sf.net#bug_ncpdq_upk -->
<a name="bug_ncpdq_upk"></a>
@@ -1817,6 +1838,7 @@ All <tt>ncpdq</tt> users are encouraged to upgrade.
NB: this bug did not affect the other arithmetic operators which
unpack data prior to arithmetic.
</li>
+</ul>
<ul><b>Recent Platform-specific Run-time Problems:</b>
No known platform-specific problems with recent releases.
diff --git a/doc/nco.dvi b/doc/nco.dvi
index 8c8fb48..b7d0e91 100644
Binary files a/doc/nco.dvi and b/doc/nco.dvi differ
diff --git a/doc/nco.html b/doc/nco.html
index 7752699..a06f505 100644
--- a/doc/nco.html
+++ b/doc/nco.html
@@ -2,10 +2,10 @@
<html>
<!-- Created by GNU Texinfo 5.1, http://www.gnu.org/software/texinfo/ -->
<head>
-<title>NCO 4.4.3 User Guide</title>
+<title>NCO 4.4.4 User Guide</title>
-<meta name="description" content="NCO 4.4.3 User Guide">
-<meta name="keywords" content="NCO 4.4.3 User Guide">
+<meta name="description" content="NCO 4.4.4 User Guide">
+<meta name="keywords" content="NCO 4.4.4 User Guide">
<meta name="resource-type" content="document">
<meta name="distribution" content="global">
<meta name="Generator" content="makeinfo">
@@ -47,7 +47,7 @@ ul.no-bullet {list-style: none}
</head>
<body lang="en" bgcolor="#FFFFFF" text="#000000" link="#0000FF" vlink="#800080" alink="#FF0000">
-<h1 class="settitle" align="center"><acronym>NCO</acronym> 4.4.3 User Guide</h1>
+<h1 class="settitle" align="center"><acronym>NCO</acronym> 4.4.4 User Guide</h1>
@@ -355,8 +355,8 @@ examples from the field of climate modeling and analysis.
The <acronym>NCO</acronym> homepage is <a href="http://nco.sf.net">http://nco.sf.net</a>, and
there is a mirror at <a href="http://dust.ess.uci.edu/nco">http://dust.ess.uci.edu/nco</a>.
</p>
-<p>This documentation is for <acronym>NCO</acronym> version 4.4.3.
-It was last updated 2 April 2014.
+<p>This documentation is for <acronym>NCO</acronym> version 4.4.4.
+It was last updated 20 May 2014.
Corrections, additions, and rewrites of this documentation are very
welcome.
</p>
@@ -636,7 +636,7 @@ descriptions of <a href="http://nco.sf.net/#bug">Known Problems</a> etc.
are on our homepage
(<a href="http://nco.sf.net/">http://nco.sf.net/</a>).
</p>
-<p>There are twelve operators in the current version (4.4.3).
+<p>There are twelve operators in the current version (4.4.4).
The function of each is explained in <a href="#Operator-Reference-Manual">Operator Reference Manual</a>.
Many of the tasks that <acronym>NCO</acronym> can accomplish are described during
the explanation of common <acronym>NCO</acronym> Features (see <a href="#Common-features">Common features</a>).
@@ -1117,8 +1117,8 @@ You must build <acronym>NCO</acronym> with netCDF4 to obtain this support.
<a name="index-NC_005fUINT"></a>
<a name="index-NC_005fINT64"></a>
<a name="index-NC_005fUINT64"></a>
-<p>The main netCDF4 features that NCO currently supports are the new
-atomic data types, Lempel-Ziv compression (deflation), and chunking.
+<p><acronym>NCO</acronym> supports many netCDF4 features including atomic data
+types, Lempel-Ziv compression (deflation), chunking, and groups.
The new atomic data types are <code>NC_UBYTE</code>, <code>NC_USHORT</code>,
<code>NC_UINT</code>, <code>NC_INT64</code>, and <code>NC_UINT64</code>.
Eight-byte integer support is an especially useful improvement from
@@ -1170,10 +1170,7 @@ netCDF3 input, i.e., to convert netCDF3 to netCDF4.
See <a href="#File-Formats-and-Conversion">File Formats and Conversion</a> for more details.
</p>
<a name="hdf4"></a> <!-- http://nco.sf.net/nco.html#hdf4 -->
-<a name="HDF4"></a> <!-- http://nco.sf.net/nco.html#HDF4 --><a name="index-H4CF"></a>
-<a name="index-h4tonccf"></a>
-<a name="index-ncl_005fconvert2nc"></a>
-<a name="index-HDF4"></a>
+<a name="HDF4"></a> <!-- http://nco.sf.net/nco.html#HDF4 --><a name="index-HDF4"></a>
<a name="index-_002d_002dhdf4"></a>
<p>When linked to a netCDF library that was built with <acronym>HDF4</acronym>
support
@@ -1183,12 +1180,12 @@ files and writing them as netCDF3/netCDF4/<acronym>HDF5</acronym> files.
<acronym>NCO</acronym> can only write through the netCDF <acronym>API</acronym>, which
can only write netCDF3/netCDF4/<acronym>HDF5</acronym> files.
So <acronym>NCO</acronym> can <em>read</em> <acronym>HDF4</acronym> files, perform
-manipulations and calculations, and then <em>write</em> the results in
-netCDF format.
+manipulations and calculations, and then it must <em>write</em> the
+results in netCDF format.
</p>
-<p>Full support for these features is forthcoming, yet support as of
-December, 2013 is quite functional.
-For best results install <acronym>NCO</acronym> versions 4.4.0 or later on top of
+<p><acronym>NCO</acronym> support for <acronym>HDF4</acronym> has been quite functional since
+December, 2013.
+For best results install <acronym>NCO</acronym> versions 4.4.0 or later on top of
netCDF versions 4.3.1 or later.
Getting to this point has been an iterative effort where Unidata
improved netCDF library capabilities in response to our requests.
@@ -1207,8 +1204,9 @@ handle <acronym>HDF4</acronym> files.
In particular, the ‘<samp>--hdf4</samp>’ switch is obsolete.
Current versions of <acronym>NCO</acronym> use netCDF to determine automatically
whether the underlying file is <acronym>HDF4</acronym>, and then take appropriate
-precautions to avoid calls not yet supported by the netCDF4 subset
-<acronym>HDF4</acronym>.
+precautions to avoid netCDF4 <acronym>API</acronym> calls that fail when applied
+to <acronym>HDF4</acronym> files (e.g., <code>nc_inq_var_chunking()</code>,
+<code>nc_inq_var_deflate()</code>).
The ‘<samp>--hdf4</samp>’ switch is supported (for backwards compatibility) yet
redundant (i.e., does no harm) with current versions of <acronym>NCO</acronym>
and netCDF.
@@ -1227,6 +1225,7 @@ types, e.g., unsigned bytes, so this procedure is the most typical.
Conversion of <acronym>HDF4</acronym> to netCDF4 as above suffices when the data
will only be processed by <acronym>NCO</acronym> and other netCDF4-aware tools.
</p>
+<a name="index-ncl_005fconvert2nc"></a>
<p>However, many tools are not fully netCDF4-aware, and so conversion to
netCDF3 may be desirable.
Obtaining a netCDF3 file from an <acronym>HDF4</acronym> is now easy:
@@ -1242,7 +1241,34 @@ ncks --hdf4 -7 fl.hdf fl.nc # HDF4->netCDF4 classic (netCDF 4.3.0-)
even when the <acronym>HDF4</acronym> file contains netCDF4 atomic types (e.g.,
unsigned bytes, 64-bit integers) because <acronym>NCO</acronym> can autoconvert
everything to atomic types supported by netCDF3
-<a name="DOCF9" href="#FOOT9"><sup>9</sup></a>.
+<a name="DOCF9" href="#FOOT9"><sup>9</sup></a>.
+</p>
+<a name="index-hdf_005fname"></a>
+<a name="index-illegal-names"></a>
+<p>As of <acronym>NCO</acronym> version 4.4.4 (May, 2014) both
+<code>ncl_convert2nc</code> and <acronym>NCO</acronym> have built-in, automatic
+workarounds to handle element names that contain characters that are
+legal in <acronym>HDF</acronym> though are illegal in <acronym>netCDF</acronym>.
+For example, slashes and leading special characters are are legal in
+<acronym>HDF</acronym> and illegal in <acronym>netCDF</acronym> element (i.e., group,
+variable, dimension, and attribute) names.
+<acronym>NCO</acronym> converts these forbidden characters to underscores, and
+retains the original names of variables in automatically produced
+attributes named <code>hdf_name</code>
+<a name="DOCF10" href="#FOOT10"><sup>10</sup></a>.
+</p>
+<a name="index-H4CF"></a>
+<a name="index-h4tonccf"></a>
+<p>Finally, in February 2014, we learned that the <acronym>HDF</acronym> group
+has a project called <acronym>H4CF</acronym>
+(described <a href="http://hdfeos.org/software/h4cflib.php">here</a>)
+whose goal is to make <acronym>HDF4</acronym> files accessible to <acronym>CF</acronym>
+tools and conventions.
+Their project includes a tool named <code>h4tonccf</code> that converts
+<acronym>HDF4</acronym> files to netCDF3 or netCDF4 files.
+We are not yet sure what advantages or features <code>h4tonccf</code> has
+that are not in <acronym>NCO</acronym>, though we suspect both methods have their
+own advantages. Corrections welcome.
</p>
<a name="index-RPM"></a>
<a name="index-Debian"></a>
@@ -1513,7 +1539,7 @@ that a system failure or user-abort of the operation (e.g., with
<kbd>C-c</kbd>) does not cause loss of data.
The user-specified <var>output-file</var> is only created upon successful
completion of the operation
-<a name="DOCF10" href="#FOOT10"><sup>10</sup></a>.
+<a name="DOCF11" href="#FOOT11"><sup>11</sup></a>.
This is accomplished by performing all operations in a temporary copy
of <var>output-file</var>.
The name of the temporary output file is constructed by appending
@@ -1535,7 +1561,7 @@ existing <var>output-file</var>).
<a name="index-execution-time-1"></a>
Also, note this feature increases the execution time of the operator
by approximately the time it takes to copy the <var>output-file</var>
-<a name="DOCF11" href="#FOOT11"><sup>11</sup></a>.
+<a name="DOCF12" href="#FOOT12"><sup>12</sup></a>.
Finally, note this fault-tolerant feature allows the <var>output-file</var>
to be the same as the <var>input-file</var> without any danger of
“overlap”.
@@ -1642,7 +1668,7 @@ Next: <a href="#Simple-Arithmetic-and-Interpolation" accesskey="n" rel="next">Si
<a name="index-merging-files"></a>
<a name="index-pasting-variables"></a>
This is referred to as <em>appending</em>, although some prefer the
-terminology <em>merging</em> <a name="DOCF12" href="#FOOT12"><sup>12</sup></a> or <em>pasting</em>.
+terminology <em>merging</em> <a name="DOCF13" href="#FOOT13"><sup>13</sup></a> or <em>pasting</em>.
Appending is often confused with what <acronym>NCO</acronym> calls
<em>concatenation</em>.
<a name="index-record-dimension"></a>
@@ -1652,7 +1678,7 @@ The length along the record dimension of the output is the sum of the
lengths of the input files.
Appending, on the other hand, refers to copying a variable from one file
to another file which may or may not already contain the variable
-<a name="DOCF13" href="#FOOT13"><sup>13</sup></a>.
+<a name="DOCF14" href="#FOOT14"><sup>14</sup></a>.
<acronym>NCO</acronym> can append or concatenate just one variable, or all the
variables in a file at the same time.
</p>
@@ -1727,12 +1753,12 @@ dimensions, with or without weights and masks) and of concatenating
there are currently no fewer than five operators which tackle these two
purposes: <code>ncra</code>, <code>nces</code>, <code>ncwa</code>,
<code>ncrcat</code>, and <code>ncecat</code>.
-These operators do share many capabilities <a name="DOCF14" href="#FOOT14"><sup>14</sup></a>, though each has its unique specialty.
+These operators do share many capabilities <a name="DOCF15" href="#FOOT15"><sup>15</sup></a>, though each has its unique specialty.
Two of these operators, <code>ncrcat</code> and <code>ncecat</code>,
concatenate hyperslabs across files.
The other two operators, <code>ncra</code> and <code>nces</code>, compute
statistics across (and/or within) files
-<a name="DOCF15" href="#FOOT15"><sup>15</sup></a>.
+<a name="DOCF16" href="#FOOT16"><sup>16</sup></a>.
First, let’s describe the concatenators, then the statistics tools.
</p>
<table class="menu" border="0" cellspacing="0">
@@ -1912,7 +1938,7 @@ Moreover, filename globbing does not work when the input files are too
numerous or their names are too lengthy (when strung together as a
single argument) to be passed by the calling shell to the <acronym>NCO</acronym>
operator
-<a name="DOCF16" href="#FOOT16"><sup>16</sup></a>.
+<a name="DOCF17" href="#FOOT17"><sup>17</sup></a>.
When this occurs, the <acronym>ANSI</acronym> C-standard <code>argc</code>-<code>argv</code>
method of passing arguments from the calling shell to a C-program (i.e.,
an <acronym>NCO</acronym> operator) breaks down.
@@ -2570,7 +2596,7 @@ The main benefits of threading so far have been to isolate the serial
from parallel portions of code.
This parallelism is now exploited by OpenMP but then runs into the I/O
bottleneck during output.
-The bottleneck could be ameliorated for large files by the use of
+The bottleneck will be ameliorated for large files by the use of
MPI-enabled calls in the netCDF4 library when the underlying filesystem
is parallel (e.g., <acronym>PVFS</acronym> or <acronym>JFS</acronym>).
Implementation of the parallel output calls in <acronym>NCO</acronym> is not a
@@ -2671,7 +2697,7 @@ system-supplied <samp>getopt.h</samp> header file, if possible.
<a name="index-getopt_005flong"></a>
<a name="index-getopt_002eh"></a>
This provides the <code>getopt_long</code> function to <acronym>NCO</acronym>
-<a name="DOCF17" href="#FOOT17"><sup>17</sup></a>.
+<a name="DOCF18" href="#FOOT18"><sup>18</sup></a>.
</p>
<a name="index-_002dD-debug_002dlevel-2"></a>
<a name="index-_002d_002ddbg_005flvl-debug_002dlevel-2"></a>
@@ -2805,7 +2831,7 @@ automatically generated if necessary.
</p>
<p>The last method passes (with ‘<samp>-n</samp>’) syntax concisely describing
the entire set of filenames
-<a name="DOCF18" href="#FOOT18"><sup>18</sup></a>.
+<a name="DOCF19" href="#FOOT19"><sup>19</sup></a>.
<a name="index-multi_002dfile-operators-1"></a>
<a name="index-files_002c-multiple"></a>
This option is only available with the <em>multi-file operators</em>:
@@ -3003,7 +3029,7 @@ password, in plain text, separated by those very keywords, e.g.,
<p>Eschew using valuable passwords for <acronym>FTP</acronym> transactions, since
<samp>.netrc</samp> passwords are potentially exposed to eavesdropping
software
-<a name="DOCF19" href="#FOOT19"><sup>19</sup></a>.
+<a name="DOCF20" href="#FOOT20"><sup>20</sup></a>.
</p>
<a name="sftp"></a> <!-- http://nco.sf.net/nco.html#sftp --><p><acronym>SFTP</acronym>, i.e., secure <acronym>FTP</acronym>, uses <acronym>SSH</acronym>-based
security protocols that solve the security issues associated with
@@ -3045,7 +3071,7 @@ of the remote file.
(synchronous) <acronym>HPSS</acronym> access.
In this case, <acronym>NCO</acronym> attempts to use the Hierarchical Storage
Interface (<acronym>HSI</acronym>) command <code>hsi get</code>
-<a name="DOCF20" href="#FOOT20"><sup>20</sup></a>.
+<a name="DOCF21" href="#FOOT21"><sup>21</sup></a>.
</p>
<p>The following examples show how one might analyze files stored on
remote systems.
@@ -3065,7 +3091,7 @@ The third example works if you have <code>rcp</code> or <code>scp</code>
access to the machine <code>dust.ess.uci.edu</code>.
The fourth and fifth examples work on <acronym>NCAR</acronym> computers with
local access to the <acronym>HPSS</acronym> <code>hsi get</code> command
-<a name="DOCF21" href="#FOOT21"><sup>21</sup></a>.
+<a name="DOCF22" href="#FOOT22"><sup>22</sup></a>.
The sixth command works if your local version of <acronym>NCO</acronym> is
<acronym>OPeNDAP</acronym>-enabled (this is fully described in <a href="#OPeNDAP">OPeNDAP</a>),
or if the remote file is accessible via <code>wget</code>.
@@ -3155,18 +3181,18 @@ We use the terms <acronym>DODS</acronym> and <acronym>OPeNDAP</acronym> intercha
and often write <acronym>OPeNDAP</acronym>/<acronym>DODS</acronym> for now.
In the future we will deprecate <acronym>DODS</acronym> in favor of
<acronym>DAP</acronym> or <acronym>OPeNDAP</acronym>, as appropriate
-<a name="DOCF22" href="#FOOT22"><sup>22</sup></a>.
+<a name="DOCF23" href="#FOOT23"><sup>23</sup></a>.
</p>
<p><acronym>NCO</acronym> may be <acronym>DAP</acronym>-enabled by linking
<acronym>NCO</acronym> to the <acronym>OPeNDAP</acronym> libraries.
<a name="index-Makefile-2"></a>
This is described in the <acronym>OPeNDAP</acronym> documentation and
automagically implemented in <acronym>NCO</acronym> build mechanisms
-<a name="DOCF23" href="#FOOT23"><sup>23</sup></a>.
+<a name="DOCF24" href="#FOOT24"><sup>24</sup></a>.
The <samp>./configure</samp> mechanism automatically enables <acronym>NCO</acronym> as
<acronym>OPeNDAP</acronym> clients if it can find the required
<acronym>OPeNDAP</acronym> libraries
-<a name="DOCF24" href="#FOOT24"><sup>24</sup></a>.
+<a name="DOCF25" href="#FOOT25"><sup>25</sup></a>.
in the usual locations.
The <code>$DODS_ROOT</code> environment variable may be used to override the
default <acronym>OPeNDAP</acronym> library location at <acronym>NCO</acronym>
@@ -3183,7 +3209,7 @@ is voluminous.
Check there and on the
<a href="http://www.unidata.ucar.edu/packages/dods/home/mailLists/">DODS mail lists</a>.
to learn more about the extensive capabilities of <acronym>OPeNDAP</acronym>
-<a name="DOCF25" href="#FOOT25"><sup>25</sup></a>.
+<a name="DOCF26" href="#FOOT26"><sup>26</sup></a>.
</p>
<p>Once <acronym>NCO</acronym> is <acronym>DAP</acronym>-enabled the operators are
<acronym>OPeNDAP</acronym> clients.
@@ -3257,7 +3283,7 @@ large files stored at remote locations.
<p>Natually there are many versions of <acronym>OPeNDAP</acronym> servers supplying
data and bugs in the server can appear to be bugs in <acronym>NCO</acronym>.
However, with very few exceptions
-<a name="DOCF26" href="#FOOT26"><sup>26</sup></a> an <acronym>NCO</acronym> command that works
+<a name="DOCF27" href="#FOOT27"><sup>27</sup></a> an <acronym>NCO</acronym> command that works
on a local file must work across an <acronym>OPeNDAP</acronym> connection or else
there is a bug in the server.
This is because <acronym>NCO</acronym> does nothing special to handle files
@@ -3467,7 +3493,7 @@ equivalent ‘<samp>--fl_fmt=netcdf4</samp>’ produces a <code>NETCDF4<
(i.e., with all supported <acronym>HDF5</acronym> features).
Using the ‘<samp>-7</samp>’ switch (or its long option equivalent
‘<samp>--7</samp>’
-<a name="DOCF27" href="#FOOT27"><sup>27</sup></a>, or
+<a name="DOCF28" href="#FOOT28"><sup>28</sup></a>, or
setting its <var>key</var>-<var>value</var> equivalent
‘<samp>--fl_fmt=netcdf4_classic</samp>’ produces a <code>NETCDF4_CLASSIC</code>
file (i.e., with all supported <acronym>HDF5</acronym> features like compression
@@ -3764,7 +3790,7 @@ modern netCDF interface.
<p>If you are still interested in explicit LFS support for netCDF versions
prior to 3.6<!-- /@w -->, know that LFS support depends on a complex,
interlocking set of operating system
-<a name="DOCF28" href="#FOOT28"><sup>28</sup></a>
+<a name="DOCF29" href="#FOOT29"><sup>29</sup></a>
and netCDF support issues.
The netCDF LFS
<a href="http://my.unidata.ucar.edu/content/software/netcdf/faq-lfs.html">FAQ</a>
@@ -3773,6 +3799,7 @@ versions of the netCDF standard.
<acronym>NCO</acronym> and netCDF automatically attempt to configure LFS at
build time.
</p>
+<a name="x"></a> <!-- http://nco.sf.net/nco.html#x -->
<a name="grp"></a> <!-- http://nco.sf.net/nco.html#grp -->
<a name="var"></a> <!-- http://nco.sf.net/nco.html#var -->
<a name="xcl"></a> <!-- http://nco.sf.net/nco.html#xcl -->
@@ -3941,7 +3968,7 @@ The fifth command is a special case of the fourth command.
specified simultaneously and <acronym>NCO</acronym> will, by default, extract the
intersection of the lists, i.e., the specified variables found in the
specified groups
-<a name="DOCF29" href="#FOOT29"><sup>29</sup></a>.
+<a name="DOCF30" href="#FOOT30"><sup>30</sup></a>.
The ‘<samp>--unn</samp>’ option causes <acronym>NCO</acronym> to extract the
union, rather than the intersection, of the specified groups and
variables.
@@ -4406,7 +4433,7 @@ possible storage structure.
<pre class="example">ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /cesm to /
</pre></div>
<p>The <samp>-3</samp> switch
-<a name="DOCF30" href="#FOOT30"><sup>30</sup></a>
+<a name="DOCF31" href="#FOOT31"><sup>31</sup></a>
specifies the output dataset should be in netCDF3
format, the <samp>-G :</samp> option flattens all extracted groups, and the
<samp>-g cesm</samp> option extracts only the <code>cesm</code> group and leaves
@@ -4455,6 +4482,8 @@ drc_out="${DATA}/nco/tmp" # [sng] Output directory
flg_cf='0' # [flg] Perform CF-compliance check
cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
+# Use single quotes to pass multiple arguments to opt=${5}
+# Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
# Command line argument option parsing
if [ -n "${1}" ]; then fl_in=${1}; fi
@@ -4479,7 +4508,9 @@ for grp_in in ${grp_lst} ; do
# Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
# Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc
+ cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
+ # Use eval in case ${opt} contains multiple arguments separated by whitespace
+ eval ${cmd}
if [ ${flg_cf} = 'cf' ]; then
# cfchecker needs Conventions <= 1.5
ncatted -h -a Conventions,global,o,c,"CF-${cf_vrs}" ${drc_out}/${grp_out}.nc
@@ -4534,7 +4565,7 @@ group in a file.
When invoked with the optional third argumnt ‘<samp>cf</samp>’,
<code>ncdismember</code> passes each file it generates to the freely
available
-<a name="DOCF31" href="#FOOT31"><sup>31</sup></a>
+<a name="DOCF32" href="#FOOT32"><sup>32</sup></a>
<code>cfchecker</code> command.
</p><div class="example">
<pre class="verbatim">zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
@@ -4633,12 +4664,12 @@ LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
./configure --enable-hdf4 --enable-hdf4-file-tests
make && make check && make installas
-# 4. NCO version 4.4.3. No RPM for this version. Must install by hand.
+# 4. NCO version 4.4.4. No RPM for this version. Must install by hand.
# Earlier versions of NCO are relatively useless for ncdismember
cd ${DATA}/tmp
-wget http://nco.sourceforge.net/src/nco-4.4.3.tar.gz .
-tar xvzf nco-4.4.3.tar.gz
-cd nco-4.4.3
+wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
+tar xvzf nco-4.4.4.tar.gz
+cd nco-4.4.4
./configure --prefix=${NCODIR}
make && make install
@@ -5044,7 +5075,7 @@ If the record variable represents time in these files, then the
values in <samp>fl_1.nc</samp> precede those in <samp>fl_2.nc</samp>, so why
do the files appear in the reverse order on the command line?
<samp>fl_1.nc</samp> is the last file named because it is the pre-existing
-output file to which we are appending all of the other input files
+output file to which we will append all the other input files listed
(in this case only <samp>fl_2.nc</samp>).
The contents of <samp>fl_1.nc</samp> are completely preserved, and only
values in <samp>fl_2.nc</samp> (and any other input files) are copied.
@@ -5103,7 +5134,7 @@ Or they may be thought of as groups of a specifed duration.
The feature and the terminology to describe it are new.
For now, we call this the <em>subcycle feature</em>, sometimes abbreviated
<acronym>SSC</acronym>
-<a name="DOCF32" href="#FOOT32"><sup>32</sup></a>.
+<a name="DOCF33" href="#FOOT33"><sup>33</sup></a>.
</p>
<p>The subcycle feature allows processing of groups of records
separated by regular intervals of records.
@@ -5986,7 +6017,7 @@ Supporting both of these attributes simultaneously is not practical.
Hence the behavior <acronym>NCO</acronym> once applied to <var>missing_value</var> it
now applies to any <var>_FillValue</var>.
<acronym>NCO</acronym> now treats any <var>missing_value</var> as normal data
-<a name="DOCF33" href="#FOOT33"><sup>33</sup></a>.
+<a name="DOCF34" href="#FOOT34"><sup>34</sup></a>.
</p>
<a name="index-ncrename"></a>
<a name="index-ncatted-3"></a>
@@ -6022,7 +6053,7 @@ treated as missing data.
If not, then <acronym>NCO</acronym> converts <var>_FillValue</var> from
<var>att_type</var> to <var>var_type</var> by using the implicit conversion rules
of C<!-- /@w -->, or, if <var>att_type</var> is <code>NC_CHAR</code>
-<a name="DOCF34" href="#FOOT34"><sup>34</sup></a>, by typecasting the results of the C function<!-- /@w -->
+<a name="DOCF35" href="#FOOT35"><sup>35</sup></a>, by typecasting the results of the C function<!-- /@w -->
<code>strtod(<var>_FillValue</var>)</code>.
<a name="index-ncatted-1"></a>
You may use the <acronym>NCO</acronym> operator <code>ncatted</code> to change the
@@ -6596,7 +6627,7 @@ invoke to read and write files.
By default, netCDF uses the preferred I/O block size returned as the
‘<samp>st_blksize</samp>’ member of the ‘<samp>stat</samp>’ structure returned by the
<code>stat()</code> system call
-<a name="DOCF35" href="#FOOT35"><sup>35</sup></a>.
+<a name="DOCF36" href="#FOOT36"><sup>36</sup></a>.
Otherwise, netCDF uses twice the system pagesize.
Larger sizes can increase access speed by reducing the number of
system calls netCDF makes to read/write data from/to disk.
@@ -6787,7 +6818,7 @@ The packed variable is stored (usually) as type <code>NC_SHORT</code>
with the two attributes required to unpack the variable,
<code>scale_factor</code> and <code>add_offset</code>, stored at the original
(unpacked) precision of the variable
-<a name="DOCF36" href="#FOOT36"><sup>36</sup></a>.
+<a name="DOCF37" href="#FOOT37"><sup>37</sup></a>.
Let <var>min</var> and <var>max</var> be the minimum and maximum values
of <var>x</var>.<!-- /@w -->
</p><br>
@@ -7232,14 +7263,14 @@ A straightforward average without promotion results in garbage since the
intermediate value which holds their sum is also of type <code>NC_SHORT</code>
and thus overflows on (i.e., cannot represent) values greater than
32,767
-<a name="DOCF37" href="#FOOT37"><sup>37</sup></a>.
+<a name="DOCF38" href="#FOOT38"><sup>38</sup></a>.
There are valid reasons for expecting this operation to succeed and
the <acronym>NCO</acronym> philosophy is to make operators do what you want, not
what is purest.
Thus, unlike C and Fortran, but like many other higher level interpreted
languages, <acronym>NCO</acronym> arithmetic operators will perform automatic type
conversion on integers when all the following conditions are met
-<a name="DOCF38" href="#FOOT38"><sup>38</sup></a>:
+<a name="DOCF39" href="#FOOT39"><sup>39</sup></a>:
</p><ol>
<li> The requested operation is arithmetic.
This is why type conversion is limited to the operators <code>ncap2</code>,
@@ -7289,7 +7320,7 @@ variables’ original storage type (e.g., from <code>NC_DOUBLE</code> to
<acronym>NCO</acronym> has handled this demotion in three ways in its history.
Prior to October, 2011 (version 4.0.8), <acronym>NCO</acronym> employed the
C library<!-- /@w --> truncate function, <code>trunc()</code>
-<a name="DOCF39" href="#FOOT39"><sup>39</sup></a>.
+<a name="DOCF40" href="#FOOT40"><sup>40</sup></a>.
Truncation rounds <var>x</var> to the nearest integer not larger in absolute
value.
For example, truncation rounds <code>1.0d</code>, <code>1.5d</code>, and
@@ -7362,10 +7393,10 @@ Single-precision (four-byte) numbers contain about seven significant
figures, while double-precision contain about sixteen.
More, err, precisely, the <acronym>IEEE</acronym> single-precision representation
gives from 6 to 9<!-- /@w --> significant decimal digits precision
-<a name="DOCF40" href="#FOOT40"><sup>40</sup></a>.
+<a name="DOCF41" href="#FOOT41"><sup>41</sup></a>.
And the <acronym>IEEE</acronym> double-precision representation
gives from 15 to 17<!-- /@w --> significant decimal digits precision
-<a name="DOCF41" href="#FOOT41"><sup>41</sup></a>.
+<a name="DOCF42" href="#FOOT42"><sup>42</sup></a>.
Hence double-precision numbers represent about nine digits more
precision than single-precision numbers.
</p>
@@ -7400,7 +7431,7 @@ our judgement, the performance penalty of always doing so would outweigh
the potential benefits.
The now-classic text “Numerical Recipes in C<!-- /@w -->” discusses this point
under the section “Implicit Conversion of Float to Double”
-<a name="DOCF42" href="#FOOT42"><sup>42</sup></a>.
+<a name="DOCF43" href="#FOOT43"><sup>43</sup></a>.
That said, such promotion is warranted in some circumstances.
</p>
<p>For example, rounding errors can accumulate to worrisome levels during
@@ -7432,7 +7463,7 @@ In Method 1<!-- /@w --> we derive the 15-year ensemble January average in t
steps, as the average of three five-year averages.
This method is naturally used when each input file contains multiple
years and multiple input files are needed
-<a name="DOCF43" href="#FOOT43"><sup>43</sup></a>.
+<a name="DOCF44" href="#FOOT44"><sup>44</sup></a>.
In Method 2<!-- /@w --> we obtain 15-year ensemble January average in a single
step, by averaging all 15 Januaries at one time:
</p><div class="example">
@@ -7625,7 +7656,7 @@ Thus about 50,000 single-precision floating point operations caused
the loss of two to three significant digits of precision.
The net error of a series of independent rounding errors is a random
walk phenomena
-<a name="DOCF44" href="#FOOT44"><sup>44</sup></a>.
+<a name="DOCF45" href="#FOOT45"><sup>45</sup></a>.
Successive rounding errors displace the answer further from the truth.
An ensemble of such averages will, on average, have no net bias.
In other words, the expectation value of a series of <acronym>IEEE</acronym>
@@ -7941,10 +7972,10 @@ Skip this section if you never work with <acronym>CF</acronym> metadata.
<p>The <acronym>CF</acronym> netCDF conventions are described
<a href="http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.6/cf-conventions.html#coordinate-system">here</a>.
Most <acronym>CF</acronym> netCDF conventions are transparent to <acronym>NCO</acronym>
-<a name="DOCF45" href="#FOOT45"><sup>45</sup></a>.
+<a name="DOCF46" href="#FOOT46"><sup>46</sup></a>.
There are no known pitfalls associated with using any <acronym>NCO</acronym>
operator on files adhering to these conventions
-<a name="DOCF46" href="#FOOT46"><sup>46</sup></a>.
+<a name="DOCF47" href="#FOOT47"><sup>47</sup></a>.
However, to facilitate maximum user friendliness, <acronym>NCO</acronym> applies
special rules to certain variables in <acronym>CF</acronym> files.
The special functions are not required by the <acronym>CF</acronym> netCDF
@@ -8257,7 +8288,7 @@ in-depth examples of <code>ncap2</code> solutions to complex problems.
<p>DESCRIPTION
</p>
<p><code>ncap2</code> arithmetically processes netCDF files
-<a name="DOCF47" href="#FOOT47"><sup>47</sup></a>.
+<a name="DOCF48" href="#FOOT48"><sup>48</sup></a>.
<a name="index-script-file"></a>
<a name="index-_002d_002dscript_002dfile"></a>
<a name="index-_002d_002dfl_005fspt"></a>
@@ -9010,11 +9041,9 @@ To stop the attribute being written use the ram_delete() method or use a bogus v
<a name="index-attribute-propagation"></a>
<a name="index-attribute-inheritance"></a>
</p><ul>
-<li> Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS
-
-</li><li> Attribute Inheritance: The LHS variable "inherits" attributes from an Input variable with the same name
-
-</li><li> It is possible to have a regular assign statement for which both propagation and inheritance occur.
+<li> Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS.
+ </li><li> Attribute Inheritance: The LHS variable "inherits" attributes from an Input variable with the same name
+ </li><li> It is possible to have a regular assign statement for which both propagation and inheritance occur.
</li></ul>
<div class="example">
@@ -10340,7 +10369,7 @@ build, use <code>ncap2 -f | grep ^gsl</code>.
The <acronym>NCO</acronym> wrappers for <acronym>GSL</acronym> functions automatically
call the error-handling version of the <acronym>GSL</acronym> function when
available
-<a name="DOCF48" href="#FOOT48"><sup>48</sup></a>.
+<a name="DOCF49" href="#FOOT49"><sup>49</sup></a>.
This allows <acronym>NCO</acronym> to return a missing value when the
<acronym>GSL</acronym> library encounters a domain error or a floating point
exception.
@@ -11579,7 +11608,7 @@ and are indicated with an asterisk
<a name="index-double_002dprecision"></a>
<a name="index-long-double"></a>
<a name="index-NC_005fDOUBLE"></a>
-<a name="DOCF49" href="#FOOT49"><sup>49</sup></a>.
+<a name="DOCF50" href="#FOOT50"><sup>50</sup></a>.
and are indicated with an asterisk.
<a name="index-_002df"></a>
<a name="index-_002d_002dprn_005ffnc_005ftbl"></a>
@@ -11587,7 +11616,7 @@ and are indicated with an asterisk.
Use the ‘<samp>-f</samp>’ (or ‘<samp>fnc_tbl</samp>’ or ‘<samp>prn_fnc_tbl</samp>’) switch
to print a complete list of functions supported on your platform.
<a name="index-Linux"></a>
-<a name="DOCF50" href="#FOOT50"><sup>50</sup></a>
+<a name="DOCF51" href="#FOOT51"><sup>51</sup></a>
</p>
<a name="xmp_ncap"></a> <!-- http://nco.sf.net/nco.html#xmp_ncap -->
<a name="xmp_ncap2"></a> <!-- http://nco.sf.net/nco.html#xmp_ncap2 -->
@@ -12283,11 +12312,11 @@ Examples: ‘<samp>ncbo --op_typ=/ 1.nc 2.nc 3.nc</samp>’, ‘<sam
i.e., ‘<samp>+</samp>’, ‘<samp>-</samp>’, ‘<samp>*</samp>’, and ‘<samp>/</samp>’<!-- /@w -->.
Some of these single characters may have special meanings to the shell
<a name="index-naked-characters"></a>
-<a name="DOCF51" href="#FOOT51"><sup>51</sup></a>.
+<a name="DOCF52" href="#FOOT52"><sup>52</sup></a>.
<a name="index-Bash-shell"></a>
Place these characters inside quotes to keep them from being interpreted
(globbed) by the shell
-<a name="DOCF52" href="#FOOT52"><sup>52</sup></a>.
+<a name="DOCF53" href="#FOOT53"><sup>53</sup></a>.
<a name="index-globbing-4"></a>
<a name="index-shell-4"></a>
<a name="index-quotes-2"></a>
@@ -12332,12 +12361,12 @@ Should users or system adminitrators decide to activate them, the
procedure is simple.
For example, to use ‘<samp>ncadd</samp>’ instead of ‘<samp>ncbo --op_typ=add</samp>’,
simply create a symbolic link from <code>ncbo</code> to <code>ncadd</code>
-<a name="DOCF53" href="#FOOT53"><sup>53</sup></a>.
+<a name="DOCF54" href="#FOOT54"><sup>54</sup></a>.
The alternatate invocations supported for each operation type are listed
above.
Alternatively, users may always define ‘<samp>ncadd</samp>’ as an <em>alias</em> to
‘<samp>ncbo --op_typ=add</samp>’
-<a name="DOCF54" href="#FOOT54"><sup>54</sup></a>.
+<a name="DOCF55" href="#FOOT55"><sup>55</sup></a>.
</p>
<p>It is important to maintain portability in <acronym>NCO</acronym> scripts.
Therefore we recommend that site-specfic invocations (e.g.,
@@ -12355,7 +12384,7 @@ stores the results in <var>file_3</var>.
<a name="index-broadcasting-variables-2"></a>
Variables in <var>file_1</var> or <var>file_2</var> are <em>broadcast</em> to conform
to the corresponding variable in the other input file if
-necessary<a name="DOCF55" href="#FOOT55"><sup>55</sup></a>.
+necessary<a name="DOCF56" href="#FOOT56"><sup>56</sup></a>.
Now <code>ncbo</code> is completely symmetric with respect to <var>file_1</var>
and <var>file_2</var>, i.e.,
<em><var>file_1</var> - <var>file_2</var> = - (<var>file_2</var> - <var>file_1</var></em>.
@@ -12391,7 +12420,7 @@ dimension of size 1<!-- /@w --> rather than having no <code>time</code> dim
all
<a name="index-degenerate-dimension-3"></a>
<a name="index-_002db-1"></a>
-<a name="DOCF56" href="#FOOT56"><sup>56</sup></a>.
+<a name="DOCF57" href="#FOOT57"><sup>57</sup></a>.
In this case the input files to <code>ncbo</code>, <var>file_1</var> and
<var>file_2</var>, will have unequally sized <code>time</code> dimensions which
causes <code>ncbo</code> to fail.
@@ -12602,7 +12631,7 @@ input groups within each file.
Each file (or group) receives an equal weight.
<code>nces</code> was formerly (until <acronym>NCO</acronym> version 4.3.9,
released December, 2013) known as <code>ncea</code> (netCDF Ensemble
-Averager)<a name="DOCF57" href="#FOOT57"><sup>57</sup></a>.
+Averager)<a name="DOCF58" href="#FOOT58"><sup>58</sup></a>.
<a name="index-ensemble-1"></a>
For example, <code>nces</code> will average a set of files or groups,
weighting each file or group evenly.
@@ -12624,7 +12653,7 @@ is the operator to use.
<p>Variables in the <var>output-file</var> are the same size as the variable
hyperslab in each input file or group, and each input file or group
must be the same size after hyperslabbing
-<a name="DOCF58" href="#FOOT58"><sup>58</sup></a>
+<a name="DOCF59" href="#FOOT59"><sup>59</sup></a>
<a name="index-record-dimension-3"></a>
<a name="index-hyperslab-2"></a>
<code>nces</code> does allow files to differ in the record dimension size
@@ -12801,12 +12830,13 @@ Next: <a href="#ncflint-netCDF-File-Interpolator" accesskey="n" rel="next">ncfli
<p><code>ncecat</code> aggregates an arbitrary number of input files into a
single output file using using one of two methods.
<em>Record AGgregation</em> (<acronym>RAG</acronym>), the traditional method employed on
-netCDF3 files and still the default method, stores <var>input-files</var> as
-consecutive records in the <var>output-file</var>.
+(flat) netCDF3 files and still the default method, stores
+<var>input-files</var> as consecutive records in the <var>output-file</var>.
<em>Group AGgregation</em> (<acronym>GAG</acronym>) stores <var>input-files</var> as top-level
groups in the netCDF4 <var>output-file</var>.
-Record Aggregation (<acronym>RAG</acronym>) makes numerous assumptions about the structure
-of input files and Group Aggregation (<acronym>GAG</acronym>) makes none.
+Record Aggregation (<acronym>RAG</acronym>) makes numerous assumptions about the
+structure of input files and Group Aggregation (<acronym>GAG</acronym>) makes
+none.
Both methods are described in detail below.
Since <code>ncecat</code> aggregates all the contents of the input files,
it can easily produce large output files so it is often helpful to invoke
@@ -13245,7 +13275,7 @@ Next: <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly" accesskey="n" rel="next
[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-H] [-h] [--hdn] [--hdr_pad <var>nbr</var>]
[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [-m] [--mk_rec_dmn <var>dim</var>] [--md5_digest]
[--no_blank] [--no_tmp_fl] [-O] [-o <var>output-file</var>] [-P] [-p <var>path</var>]
-[-Q] [-q] [-R] [-r] [--ram_all] [-s <var>format</var>]
+[-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s <var>format</var>]
[-u] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x] [--xml]
<var>input-file</var> [[<var>output-file</var>]]
</pre></div>
@@ -13338,7 +13368,7 @@ if any) must agree (conform) in both files.
Then the variable values (and any coordinate dimension values)
from <var>input-file</var> will overwrite the corresponding variable values
(and coordinate dimension values, if any) in <var>output-file</var>
-<a name="DOCF59" href="#FOOT59"><sup>59</sup></a>.
+<a name="DOCF60" href="#FOOT60"><sup>60</sup></a>.
</p>
<p>Since there can only be one record dimension in a file, the record
dimension must have the same name (though not necessarily the same size) in
@@ -13369,7 +13399,8 @@ Features common to many operators are described in
</p>
<dl compact="compact">
<dd>
-<a name="-5"></a> <!-- http://nco.sf.net/nco.html#-5 --><a name="index-_002d5"></a>
+<a name="-5"></a> <!-- http://nco.sf.net/nco.html#-5 -->
+<a name="5"></a> <!-- http://nco.sf.net/nco.html#5 --><a name="index-_002d5"></a>
</dd>
<dt>‘<samp>-5</samp>’</dt>
<dd><p>Print data to screen alphabetically by group, and alphabetically by
@@ -13379,7 +13410,8 @@ and may be selected for traditional mode printing with ‘<samp>-5</samp>&rs
(The switch for invocation may change to something more descriptive in
the future).
</p>
-<a name="index-alphabetization"></a>
+<a name="abc"></a> <!-- http://nco.sf.net/nco.html#abc -->
+<a name="alphabetize"></a> <!-- http://nco.sf.net/nco.html#alphabetize --><a name="index-alphabetization"></a>
<a name="index-sort-alphabetically"></a>
<a name="index-_002da"></a>
<a name="index-_002d_002dabc"></a>
@@ -13397,7 +13429,8 @@ file.
Thus <code>-a</code> retains the original ordering of the variables.
Also ‘<samp>--abc</samp>’ and ‘<samp>--alphabetize</samp>’.
</p>
-<a name="index-binary-format"></a>
+<a name="bnr"></a> <!-- http://nco.sf.net/nco.html#bnr -->
+<a name="binary"></a> <!-- http://nco.sf.net/nco.html#binary --><a name="index-binary-format"></a>
<a name="index-_002db-2"></a>
<a name="index-_002d_002dfl_005fbnr"></a>
<a name="index-_002d_002dbnr"></a>
@@ -13408,7 +13441,20 @@ Also ‘<samp>--abc</samp>’ and ‘<samp>--alphabetize</samp>&rsqu
<samp>file</samp>.
Also ‘<samp>--fl_bnr</samp>’ and ‘<samp>--binary-file</samp>’.
Writing packed variables in binary format is not supported.
-</p>
+Metadata is never output to the binary file.
+Examine the netCDF output file to see the variables in the binary file.
+Use the ‘<samp>-C</samp>’ switch, if necessary, to avoid wanting unwanted
+coordinates to the binary file:
+</p><div class="example">
+<pre class="example">% ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
+200
+% ls -l ~/bnr.dat
+% ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
+40
+</pre></div>
+
<a name="dmn_fix_mk"></a> <!-- http://nco.sf.net/nco.html#dmn_fix_mk -->
<a name="fix_rec_dmn"></a> <!-- http://nco.sf.net/nco.html#fix_rec_dmn --><a name="index-record-dimension-7"></a>
<a name="index-fixed-dimension-2"></a>
@@ -13545,7 +13591,8 @@ See <a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concat
<a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a> for other methods of
changing variable dimensionality, including the record dimension.
</p>
-<a name="prn"></a> <!-- http://nco.sf.net/nco.html#prn --><a name="index-_002dH-1"></a>
+<a name="H"></a> <!-- http://nco.sf.net/nco.html#H -->
+<a name="data"></a> <!-- http://nco.sf.net/nco.html#data --><a name="index-_002dH-1"></a>
<a name="index-_002d_002ddata"></a>
<a name="index-_002d_002dhieronymus"></a>
</dd>
@@ -13603,7 +13650,8 @@ lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
</pre></div>
-<a name="index-_002dM-2"></a>
+<a name="Metadata"></a> <!-- http://nco.sf.net/nco.html#Metadata -->
+<a name="M"></a> <!-- http://nco.sf.net/nco.html#M --><a name="index-_002dM-2"></a>
<a name="index-_002d_002dMtd"></a>
<a name="index-_002d_002dMetadata"></a>
<a name="index-metadata_002c-global-1"></a>
@@ -13655,7 +13703,9 @@ ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
<p>where <code>VAs</code> and <code>GAs</code> denote variable and group/global
attributes, respectively.
</p>
-<a name="index-ncdump-2"></a>
+<a name="m"></a> <!-- http://nco.sf.net/nco.html#m -->
+<a name="mtd"></a> <!-- http://nco.sf.net/nco.html#mtd -->
+<a name="metadata"></a> <!-- http://nco.sf.net/nco.html#metadata --><a name="index-ncdump-2"></a>
<a name="index-_002dm"></a>
<a name="index-_002d_002dmtd"></a>
<a name="index-_002d_002dmetadata"></a>
@@ -13680,7 +13730,9 @@ specified.
Also use ‘<samp>-m</samp>’ to turn-off copying of variable metadata to an output
file.
</p>
-<a name="index-_002d_002dno_005fblank"></a>
+<a name="no_blank"></a> <!-- http://nco.sf.net/nco.html#no_blank -->
+<a name="noblank"></a> <!-- http://nco.sf.net/nco.html#noblank -->
+<a name="no-blank"></a> <!-- http://nco.sf.net/nco.html#no-blank --><a name="index-_002d_002dno_005fblank"></a>
<a name="index-_002d_002dnoblank"></a>
<a name="index-_002d_002dno_002dblank"></a>
<a name="index-blank"></a>
@@ -13695,7 +13747,8 @@ To enable the old behavior of printing the numeric representation of
missing values (e.g., <code>1.0e36</code>), use the ‘<samp>--no_blank</samp>’ switch.
Also activated using ‘<samp>--noblank</samp>’ or ‘<samp>--no-blank</samp>’.
</p>
-<a name="index-_002dP"></a>
+<a name="P"></a> <!-- http://nco.sf.net/nco.html#P -->
+<a name="prn"></a> <!-- http://nco.sf.net/nco.html#prn --><a name="index-_002dP"></a>
<a name="index-_002d_002dprint"></a>
<a name="index-_002d_002dprn"></a>
</dd>
@@ -13706,7 +13759,7 @@ The ‘<samp>-P</samp>’ switch is a convenience abbreviation for
Also activated using ‘<samp>--print</samp>’ or ‘<samp>--prn</samp>’.
This set of switches is useful for exploring file contents.
</p>
-<a name="index-_002dQ"></a>
+<a name="Q"></a> <!-- http://nco.sf.net/nco.html#Q --><a name="index-_002dQ"></a>
</dd>
<dt>‘<samp>-Q</samp>’</dt>
<dd><p>Toggle printing of dimension indices and coordinate values when printing
@@ -13715,7 +13768,8 @@ Each variable’s name appears flush left in the output.
This helps locate specific variables in lists with many variables and
different dimensions.
</p>
-<a name="index-_002dq"></a>
+<a name="q"></a> <!-- http://nco.sf.net/nco.html#q -->
+<a name="quiet"></a> <!-- http://nco.sf.net/nco.html#quiet --><a name="index-_002dq"></a>
<a name="index-_002d_002dquiet"></a>
<a name="index-quiet"></a>
</dd>
@@ -13729,7 +13783,30 @@ This allows <code>ncks</code> to retrieve remote files without
automatically trying to print them.
Also ‘<samp>--quiet</samp>’.
</p>
-<a name="index-_002ds"></a>
+<a name="rad"></a> <!-- http://nco.sf.net/nco.html#rad -->
+<a name="orphan"></a> <!-- http://nco.sf.net/nco.html#orphan -->
+<a name="rph_dmn"></a> <!-- http://nco.sf.net/nco.html#rph_dmn --><a name="index-_002d_002drad"></a>
+<a name="index-orphan-dimensions"></a>
+<a name="index-_002d_002dretain_005fall_005fdimensions"></a>
+<a name="index-_002d_002dorphan_005fdimensions"></a>
+<a name="index-_002d_002drph_005fdmn"></a>
+</dd>
+<dt>‘<samp>--rad</samp>’</dt>
+<dd><p>Retain all dimensions.
+When invoked with <code>--rad</code> (Retain All Dimensions),
+<code>ncks</code> copies each dimension in the input file to the output
+file, regardless of whether the dimension is utilized by any variables.
+Normally <code>ncks</code> discards “orphan dimensions”, i.e., dimensions
+not referenced by any variables.
+This switch allows users to keep non-referenced dimensions in the workflow.
+When invoked in printing mode, causes orphaned dimensions to be printed
+(they are not printed by default).
+Also ‘<samp>--retain_all_dimensions</samp>’, ‘<samp>--orphan_dimensions</samp>’, and
+‘<samp>--rph_dmn</samp>’.
+</p>
+<a name="s"></a> <!-- http://nco.sf.net/nco.html#s -->
+<a name="sng_fmt"></a> <!-- http://nco.sf.net/nco.html#sng_fmt -->
+<a name="string"></a> <!-- http://nco.sf.net/nco.html#string --><a name="index-_002ds"></a>
<a name="index-_002d_002dstring"></a>
<a name="index-_002d_002dsng_005ffmt"></a>
<a name="index-printf_0028_0029-1"></a>
@@ -13740,7 +13817,8 @@ Also ‘<samp>--quiet</samp>’.
Accepts C language<!-- /@w --> escape sequences and <code>printf()</code> formats.
Also ‘<samp>--string</samp>’ and ‘<samp>--sng_fmt</samp>’.
</p>
-<a name="index-_002du"></a>
+<a name="units"></a> <!-- http://nco.sf.net/nco.html#units -->
+<a name="u"></a> <!-- http://nco.sf.net/nco.html#u --><a name="index-_002du"></a>
<a name="index-_002d_002dunits"></a>
</dd>
<dt>‘<samp>-u</samp>’</dt>
@@ -14474,7 +14552,7 @@ The record dimension is always the most slowly varying dimension in a
record variable (see <a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a>).
The specified re-ordering fails if it requires creating more than
one record dimension amongst all the output variables
-<a name="DOCF60" href="#FOOT60"><sup>60</sup></a>.
+<a name="DOCF61" href="#FOOT61"><sup>61</sup></a>.
</p>
<p>Two special cases of dimension re-ordering and reversal deserve special
mention.
@@ -14550,7 +14628,7 @@ ncl_convert2nc modis.hdf
ncpdq --hdf_upk -P xst_new modis.nc modis.nc
</pre></div>
<p><acronym>NCO</acronym> now
-<a name="DOCF61" href="#FOOT61"><sup>61</sup></a>
+<a name="DOCF62" href="#FOOT62"><sup>62</sup></a>
automatically detects <acronym>HDF4</acronym> files.
In this case it produces an output file <samp>modis.nc</samp> which preserves
the <acronym>HDF</acronym> packing used in the input file.
@@ -14561,7 +14639,7 @@ and then repacks those same variables using the netCDF algorithm
As described above the ‘<samp>--P xst_new</samp>’ packing policy only repacks
variables that are already packed.
Not-packed variables are copied directly without loss of precision
-<a name="DOCF62" href="#FOOT62"><sup>62</sup></a>.
+<a name="DOCF63" href="#FOOT63"><sup>63</sup></a>.
</p>
<p>Re-order file <samp>in.nc</samp> so that the dimension <code>lon</code> always
precedes the dimension <code>lat</code> and store the results in
@@ -15315,7 +15393,7 @@ of the hyperslab.
<a name="index-_002dI"></a>
Option ‘<samp>-I</samp>’ overrides this default behavior and causes
<code>ncwa</code> not to weight or mask coordinate variables
-<a name="DOCF63" href="#FOOT63"><sup>63</sup></a>.
+<a name="DOCF64" href="#FOOT64"><sup>64</sup></a>.
In the above case, this causes the value of <code>latitude</code> in the
<var>output-file</var> to be 45.0<!-- /@w -->, an appealing result.
Thus, ‘<samp>-I</samp>’ specifies simple arithmetic averages for the coordinate
@@ -15323,7 +15401,7 @@ variables.
In the case of latitude, ‘<samp>-I</samp>’ specifies that you prefer to archive
the arithmetic mean latitude of the averaged hyperslabs rather than the
area-weighted mean latitude.
-<a name="DOCF64" href="#FOOT64"><sup>64</sup></a>.
+<a name="DOCF65" href="#FOOT65"><sup>65</sup></a>.
</p>
<a name="index-average-1"></a>
<a name="index-operation-types-2"></a>
@@ -15367,7 +15445,7 @@ the ‘<samp>-B</samp>’ or ‘<samp>--mask_condition</samp>’
The older method is to use the three switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and
‘<samp>-M</samp>’ to specify the <var>mask_var</var>, <var>mask_comp</var>, and
<var>mask_val</var>, respectively.
-<a name="DOCF65" href="#FOOT65"><sup>65</sup></a>.
+<a name="DOCF66" href="#FOOT66"><sup>66</sup></a>.
The <var>mask_condition</var> string is automatically parsed into its three
constituents <var>mask_var</var>, <var>mask_comp</var>, and <var>mask_val</var>.
</p>
@@ -15497,7 +15575,7 @@ for the <samp>85_0112.nc</samp> file described by the sample header above.
<a name="index-climate-model-5"></a>
<p>Compute the meridional (latitudinal) mean, with values weighted by
the corresponding element of <var>gw</var>
-<a name="DOCF66" href="#FOOT66"><sup>66</sup></a>:
+<a name="DOCF67" href="#FOOT67"><sup>67</sup></a>:
</p><div class="example">
<pre class="example">ncwa -w gw -a lat in.nc out.nc
</pre></div>
@@ -15515,7 +15593,7 @@ The sum of the Gaussian weights is 2.0.<!-- /@w -->
<a name="index-climate-model-6"></a>
<p>Compute the area-mean over the globe using only points for which
<var>ORO</var> < 0.5
-<a name="DOCF67" href="#FOOT67"><sup>67</sup></a>:
+<a name="DOCF68" href="#FOOT68"><sup>68</sup></a>:
</p><div class="example">
<pre class="example">ncwa -B 'ORO < 0.5' -w gw -a lat,lon in.nc out.nc
ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon in.nc out.nc
@@ -15523,7 +15601,7 @@ ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon in.nc out.nc
<p>It is considerably simpler to specify the complete <var>mask_cond</var> with
the single string argument to ‘<samp>-B</samp>’ than with the three separate
switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and ‘<samp>-M</samp>’
-<a name="DOCF68" href="#FOOT68"><sup>68</sup></a>.
+<a name="DOCF69" href="#FOOT69"><sup>69</sup></a>.
If in doubt, enclose the <var>mask_cond</var> within quotes since some
of the comparators have special meanings to the shell.
</p>
@@ -15590,7 +15668,7 @@ contains more information on how to contribute.
<a href="https://www.paypal.com/xclick/business=zender%40uci.edu&item_name=NCO+development&item_number=nco_dnt_dvl&no_note=1&tax=0¤cy_code=USD">PayPal</a>.
<acronym>NCO</acronym> has been shared for over 10 years<!-- /@w --> yet only two
users have contributed any money to the developers
-<a name="DOCF69" href="#FOOT69"><sup>69</sup></a>.
+<a name="DOCF70" href="#FOOT70"><sup>70</sup></a>.
So you could be the third!
</p>
<a name="dvl"></a> <!-- http://nco.sf.net/nco.html#dvl -->
@@ -16415,8 +16493,7 @@ for var_id in {0..1}; do # Loop over two variables
done
</pre></div>
-<p>With the use of <tt class="key">group</tt>, the above script
-will be shortened to just ONE LINE<!-- /@w -->.
+<p>With the use of <tt class="key">group</tt>, the above script will be shortened to ONE LINE<!-- /@w -->.
<a name="index-groups_002c-averaging"></a>
</p><div class="example">
<pre class="example"># Data from cmb_fl_grp.sh
@@ -17869,6 +17946,7 @@ Previous: <a href="#mybibnode" accesskey="p" rel="previous">mybibnode</a>, Up: <
<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005frlt-mask_005fcomp"><code>--op_rlt <var>mask_comp</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005ftyp-op_005ftyp"><code>--op_typ <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005ftyp-op_005ftyp-1"><code>--op_typ <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-_002d_002dorphan_005fdimensions"><code>--orphan_dimensions</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002doutput-fl_005fout"><code>--output <var>fl_out</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002doverwrite"><code>--overwrite</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002doverwrite-1"><code>--overwrite</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
@@ -17886,14 +17964,17 @@ Previous: <a href="#mybibnode" accesskey="p" rel="previous">mybibnode</a>, Up: <
<tr><td></td><td valign="top"><a href="#index-_002d_002dpth-input_002dpath"><code>--pth <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dpth-input_002dpath-1"><code>--pth <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dquiet"><code>--quiet</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-_002d_002drad"><code>--rad</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dram_005fall"><code>--ram_all</code></a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dram_005fall-1"><code>--ram_all</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drcd_005fnm-ulm_005fnm">‘<samp>--rcd_nm <var>ulm_nm</var></samp>’</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drecord_005fappend"><code>--record_append</code></a>:</td><td> </td><td valign="top"><a href="#Record-Appending">Record Appending</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drec_005fapn"><code>--rec_apn</code></a>:</td><td> </td><td valign="top"><a href="#Record-Appending">Record Appending</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002dretain"><code>--retain</code></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-_002d_002dretain_005fall_005fdimensions"><code>--retain_all_dimensions</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drevision"><code>--revision</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drevision-1"><code>--revision</code></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-_002d_002drph_005fdmn"><code>--rph_dmn</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drth_005fdbl"><code>--rth_dbl</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drth_005fflt"><code>--rth_flt</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-_002d_002drtn"><code>--rtn</code></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
@@ -18669,6 +18750,7 @@ Previous: <a href="#mybibnode" accesskey="p" rel="previous">mybibnode</a>, Up: <
<tr><td></td><td valign="top"><a href="#index-HDF4-1"><acronym>HDF4</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-HDF5"><acronym>HDF5</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-HDF5-1"><acronym>HDF5</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-hdf_005fname"><code>hdf_name</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-hdp"><code>hdp</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-help">help</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-Henry-Butowsky">Henry Butowsky</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
@@ -18722,6 +18804,7 @@ Previous: <a href="#mybibnode" accesskey="p" rel="previous">mybibnode</a>, Up: <
<tr><td></td><td valign="top"><a href="#index-IEEE-NaN">IEEE NaN</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-if_0028_0029">if()</a>:</td><td> </td><td valign="top"><a href="#if-statement">if statement</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-ilimit"><code>ilimit</code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-illegal-names">illegal names</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-implicit-conversion">implicit conversion</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-include"><code>include</code></a>:</td><td> </td><td valign="top"><a href="#Include-files">Include files</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-including-files">including files</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
@@ -19116,6 +19199,7 @@ Previous: <a href="#mybibnode" accesskey="p" rel="previous">mybibnode</a>, Up: <
<tr><td></td><td valign="top"><a href="#index-Orion-Powlawski">Orion Powlawski</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-ORO"><code>ORO</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-ORO-1"><code>ORO</code></a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
+<tr><td></td><td valign="top"><a href="#index-orphan-dimensions">orphan dimensions</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-OS"><acronym>OS</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-output-file">output file</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
<tr><td></td><td valign="top"><a href="#index-output-file-1">output file</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
@@ -19730,7 +19814,7 @@ It is simply too much trouble.</p>
<p>The procedure for doing this is documented at
<a href="http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html">http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html</a>.</p>
<h3><a name="FOOT9" href="#DOCF9">(9)</a></h3>
-<p>Prior to <acronym>NCO</acronym> version 4.4.0 (January, 2014), we recommend the
+<p>Prior to <acronym>NCO</acronym> version 4.4.0 (January, 2014), we recommended the
<code>ncl_convert2nc</code> tool to convert <acronym>HDF</acronym> to netCDF3 when
both these are true: 1. You<!-- /@w --> must have netCDF3 and 2. the<!-- /@w -->
<acronym>HDF</acronym> file contains netCDF4 atomic types.
@@ -19746,39 +19830,42 @@ Unsigned bytes stay unsigned bytes.
64-bit integers stay 64-bit integers.
Strings stay strings.
Hence, <code>ncks</code> conversions often result in smaller files than
-<code>ncl_convert2nc</code> conversions.
-Finally, in February 2014, we learned that the <acronym>HDF</acronym> group
-has a project called <acronym>H4CF</acronym> whose goal is to make <acronym>HDF4</acronym>
-files accessible to <acronym>CF</acronym> tools and conventions.
-Their project includes a tool named <code>h4tonccf</code> that converts
-<acronym>HDF4</acronym> files to netCDF3 or netCDF4 files.
-We know of no features in <code>h4tonccf</code> that are not in
-<acronym>NCO</acronym>. Corrections welcome.</p>
+<code>ncl_convert2nc</code> conversions.</p>
<h3><a name="FOOT10" href="#DOCF10">(10)</a></h3>
+<p>Two real-world examples: <acronym>NCO</acronym> translates the
+<acronym>NASA</acronym> <acronym>CERES</acronym> dimension <code>(FOV) Footprints</code> to
+<code>_FOV_ Footprints</code>, and
+<code>Cloud & Aerosol, Cloud Only, Clear Sky w/Aerosol, and Clear Sky</code>
+(yes, the dimension name includes whitespace and special characters) to
+<code>Cloud & Aerosol, Cloud Only, Clear Sky w_Aerosol, and Clear Sky</code>
+<code>ncl_convert2nc</code> makes the element name netCDF-safe in a
+slightly different manner, and also stores the original name in the
+<code>hdf_name</code> attribute.</p>
+<h3><a name="FOOT11" href="#DOCF11">(11)</a></h3>
<p>The <code>ncrename</code> and <code>ncatted</code> operators are
exceptions to this rule.
See <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>.</p>
-<h3><a name="FOOT11" href="#DOCF11">(11)</a></h3>
+<h3><a name="FOOT12" href="#DOCF12">(12)</a></h3>
<p>The OS-specific system move command is used.
This is <code>mv</code> for UNIX, and <code>move</code> for Windows.</p>
-<h3><a name="FOOT12" href="#DOCF12">(12)</a></h3>
+<h3><a name="FOOT13" href="#DOCF13">(13)</a></h3>
<p>The terminology <em>merging</em> is
reserved for an (unwritten) operator which replaces hyperslabs of a
variable in one file with hyperslabs of the same variable from another
file</p>
-<h3><a name="FOOT13" href="#DOCF13">(13)</a></h3>
+<h3><a name="FOOT14" href="#DOCF14">(14)</a></h3>
<p>Yes, the terminology is confusing.
By all means mail me if you think of a better nomenclature.
Should <acronym>NCO</acronym> use <em>paste</em> instead of <em>append</em>?
</p>
-<h3><a name="FOOT14" href="#DOCF14">(14)</a></h3>
+<h3><a name="FOOT15" href="#DOCF15">(15)</a></h3>
<p>Currently
<code>nces</code> and <code>ncrcat</code> are symbolically linked to the
<code>ncra</code> executable, which behaves slightly differently based on
its invocation name (i.e., ‘<samp>argv[0]</samp>’).
These three operators share the same source code, and merely have
different inner loops.</p>
-<h3><a name="FOOT15" href="#DOCF15">(15)</a></h3>
+<h3><a name="FOOT16" href="#DOCF16">(16)</a></h3>
<p>The third averaging operator, <code>ncwa</code>, is the most
sophisticated averager in <acronym>NCO</acronym>.
However, <code>ncwa</code> is in a different class than <code>ncra</code> and
@@ -19786,7 +19873,7 @@ However, <code>ncwa</code> is in a different class than <code>ncra</code> and
opposed to multiple files).
On that single file, however, <code>ncwa</code> provides a richer set of
averaging options—including weighting, masking, and broadcasting.</p>
-<h3><a name="FOOT16" href="#DOCF16">(16)</a></h3>
+<h3><a name="FOOT17" href="#DOCF17">(17)</a></h3>
<p>The exact length which exceeds the operating system internal
limit for command line lengths varies from <acronym>OS</acronym> to <acronym>OS</acronym>
and from shell to shell.
@@ -19794,23 +19881,23 @@ and from shell to shell.
size of command line arguments.
Many <acronym>OS</acronym>s cannot handle command line arguments (including
results of file globbing) exceeding 4096 characters.</p>
-<h3><a name="FOOT17" href="#DOCF17">(17)</a></h3>
+<h3><a name="FOOT18" href="#DOCF18">(18)</a></h3>
<p>If a <code>getopt_long</code> function cannot be found on the system,
<acronym>NCO</acronym> will use the <code>getopt_long</code> from the
<code>my_getopt</code> package by Benjamin Sittler
<a href="mailto:bsittler at iname.com">bsittler at iname.com</a>.
This is <acronym>BSD</acronym>-licensed software available from
<a href="http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt">http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt</a>.</p>
-<h3><a name="FOOT18" href="#DOCF18">(18)</a></h3>
+<h3><a name="FOOT19" href="#DOCF19">(19)</a></h3>
<p>The ‘<samp>-n</samp>’ option is a backward compatible superset of the
<code>NINTAP</code> option from the <acronym>NCAR</acronym> <acronym>CCM</acronym> Processor.</p>
-<h3><a name="FOOT19" href="#DOCF19">(19)</a></h3>
+<h3><a name="FOOT20" href="#DOCF20">(20)</a></h3>
<p><acronym>NCO</acronym> does not implement command line options to
specify <acronym>FTP</acronym> logins and passwords because copying those data
into the <code>history</code> global attribute in the output file (done by
default) poses an unacceptable security risk.
</p>
-<h3><a name="FOOT20" href="#DOCF20">(20)</a></h3>
+<h3><a name="FOOT21" href="#DOCF21">(21)</a></h3>
<p>The <code>hsi</code> command must be in the user’s path in one of
the following directories: <code>/usr/local/bin</code>, <code>/opt/hpss/bin</code>,
or <code>/ncar/opt/hpss/hsi</code>.
@@ -19818,7 +19905,7 @@ Tell us if the <acronym>HPSS</acronym> installation at your site places the
<code>hsi</code> command in a different location, and we will add that
location to the list of acceptable paths to search for <code>hsi</code>.
</p>
-<h3><a name="FOOT21" href="#DOCF21">(21)</a></h3>
+<h3><a name="FOOT22" href="#DOCF22">(22)</a></h3>
<p><acronym>NCO</acronym> supported the old <acronym>NCAR</acronym> Mass Storage
System (<acronym>MSS</acronym>) until version 4.0.7 in April, 2011.
<acronym>NCO</acronym> supported <acronym>MSS</acronym>-retrievals via a variety of
@@ -19829,7 +19916,7 @@ Once the <acronym>MSS</acronym> was decommissioned in March, 2011, support for
these retrieval mechanisms was replaced by support for <acronym>HPSS</acronym>
in <acronym>NCO</acronym>.
</p>
-<h3><a name="FOOT22" href="#DOCF22">(22)</a></h3>
+<h3><a name="FOOT23" href="#DOCF23">(23)</a></h3>
<a name="index-NVODS"></a>
<a name="index-National-Virtual-Ocean-Data-System"></a>
<a name="index-open-source-1"></a>
@@ -19846,7 +19933,7 @@ In other words, <acronym>NVODS</acronym> is implemented with <acronym>OPeNDAP</a
maintains, develops, and promulgates the <acronym>DAP</acronym> standard.
<acronym>OPeNDAP</acronym> and <acronym>DAP</acronym> really are interchangeable.
Got it yet?</p>
-<h3><a name="FOOT23" href="#DOCF23">(23)</a></h3>
+<h3><a name="FOOT24" href="#DOCF24">(24)</a></h3>
<p>Automagic support for <acronym>DODS</acronym> version 3.2.x was deprecated in
December, 2003 after <acronym>NCO</acronym> version 2.8.4.
<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.4.x commenced in
@@ -19857,13 +19944,13 @@ June, 2005, with <acronym>NCO</acronym> version 3.0.1.
June, 2006, with <acronym>NCO</acronym> version 3.1.3.
<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.7.x commenced in
January, 2007, with <acronym>NCO</acronym> version 3.1.9.</p>
-<h3><a name="FOOT24" href="#DOCF24">(24)</a></h3>
+<h3><a name="FOOT25" href="#DOCF25">(25)</a></h3>
<p>The minimal set of libraries required to build <acronym>NCO</acronym> as
<acronym>OPeNDAP</acronym> clients, where <acronym>OPeNDAP</acronym> is supplied as a
separate library apart from <samp>libnetcdf.a</samp>, are, in link order,
<samp>libnc-dap.a</samp>, <samp>libdap.a</samp>, and
<samp>libxml2</samp> and <samp>libcurl.a</samp>.</p>
-<h3><a name="FOOT25" href="#DOCF25">(25)</a></h3>
+<h3><a name="FOOT26" href="#DOCF26">(26)</a></h3>
<p>We are most familiar with the <acronym>OPeNDAP</acronym> ability to enable
network-transparent data access.
<a name="index-constraint-expressions"></a>
@@ -19873,69 +19960,69 @@ hyperslabbing and server-side processing via <em>constraint expressions</em>.
If you know more about this, please consider writing a section
on "<acronym>OPeNDAP</acronym> Capabilities of Interest to <acronym>NCO</acronym> Users"
for incorporation in the <cite>NCO User Guide</cite>.</p>
-<h3><a name="FOOT26" href="#DOCF26">(26)</a></h3>
+<h3><a name="FOOT27" href="#DOCF27">(27)</a></h3>
<p>For example, <acronym>DAP</acronym> servers do not like variables with
periods (“.”) in their names even though this is perfectly legal with
netCDF.
Such names may cause the <acronym>DAP</acronym> service to fail because
<acronym>DAP</acronym> interprets the period as structure delimiter in an
<acronym>HTTP</acronym> query string.</p>
-<h3><a name="FOOT27" href="#DOCF27">(27)</a></h3>
+<h3><a name="FOOT28" href="#DOCF28">(28)</a></h3>
<p>The reason (and mnemonic) for ‘<samp>-7</samp>’ is that <code>NETCDF4_CLASSIC</code>
files include great features of both netCDF3 (compatibility) and
netCDF4 (compression, chunking) and, well, <em>3+4=7</em>.</p>
-<h3><a name="FOOT28" href="#DOCF28">(28)</a></h3>
-<p>Linux and <acronym>AIX</acronym> do support <acronym>LFS</acronym>.</p>
<h3><a name="FOOT29" href="#DOCF29">(29)</a></h3>
+<p>Linux and <acronym>AIX</acronym> do support <acronym>LFS</acronym>.</p>
+<h3><a name="FOOT30" href="#DOCF30">(30)</a></h3>
<p>Intersection-mode can also be explicitly invoked with the ‘<samp>--nsx</samp>’
or ‘<samp>--intersection</samp>’ switches.
These switches are supplied for clarity and consistency and do
absolutely nothing since intersection-mode is the default.</p>
-<h3><a name="FOOT30" href="#DOCF30">(30)</a></h3>
+<h3><a name="FOOT31" href="#DOCF31">(31)</a></h3>
<p>Note that the <samp>-3</samp> switch should appear <em>after</em> the
<samp>-G</samp> and <samp>-g</samp> switches.
This is due to an artifact of the <acronym>GPE</acronym> implementation which we
wish to remove in the future.</p>
-<h3><a name="FOOT31" href="#DOCF31">(31)</a></h3>
+<h3><a name="FOOT32" href="#DOCF32">(32)</a></h3>
<p>CFchecker is developed by Michael Decker and Martin Schultz at
Forschungszentrum Jülich and distributed at
<a href="https://bitbucket.org/mde_/cfchecker">https://bitbucket.org/mde_/cfchecker</a>.</p>
-<h3><a name="FOOT32" href="#DOCF32">(32)</a></h3>
+<h3><a name="FOOT33" href="#DOCF33">(33)</a></h3>
<p>When originally released in 2012 this was called the
<em>duration feature</em>, and was abbreviated <acronym>DRN</acronym>.</p>
-<h3><a name="FOOT33" href="#DOCF33">(33)</a></h3>
+<h3><a name="FOOT34" href="#DOCF34">(34)</a></h3>
<p>The old functionality, i.e., where the ignored values are indicated by
<code>missing_value</code> not <code>_FillValue</code>, may still be selected
<em>at <acronym>NCO</acronym> build time</em> by compiling <acronym>NCO</acronym>
with the token definition
<kbd>CPPFLAGS='-UNCO_USE_FILL_VALUE'</kbd>.
</p>
-<h3><a name="FOOT34" href="#DOCF34">(34)</a></h3>
+<h3><a name="FOOT35" href="#DOCF35">(35)</a></h3>
<p>For example, the <acronym>DOE</acronym> <acronym>ARM</acronym> program often
uses <var>att_type</var> = <code>NC_CHAR</code> and <var>_FillValue</var> =
‘<samp>-99999.</samp>’.
</p>
-<h3><a name="FOOT35" href="#DOCF35">(35)</a></h3>
+<h3><a name="FOOT36" href="#DOCF36">(36)</a></h3>
<p>On modern Linux systems the block size defaults to 8192 B<!-- /@w -->.
The GLADE filesystem at NCAR has a block size of 512 kB<!-- /@w -->.</p>
-<h3><a name="FOOT36" href="#DOCF36">(36)</a></h3>
+<h3><a name="FOOT37" href="#DOCF37">(37)</a></h3>
<p>Although not a part of the standard, <acronym>NCO</acronym> enforces
the policy that the <code>_FillValue</code> attribute, if any, of a packed
variable is also stored at the original precision.</p>
-<h3><a name="FOOT37" href="#DOCF37">(37)</a></h3>
+<h3><a name="FOOT38" href="#DOCF38">(38)</a></h3>
<p><em>32767 = 2^15-1</em>
</p>
-<h3><a name="FOOT38" href="#DOCF38">(38)</a></h3>
+<h3><a name="FOOT39" href="#DOCF39">(39)</a></h3>
<p>Operators began performing automatic type conversions before
arithmetic in <acronym>NCO</acronym> version 1.2<!-- /@w -->, August, 2000.
Previous versions never performed unnecessary type conversion for
arithmetic.</p>
-<h3><a name="FOOT39" href="#DOCF39">(39)</a></h3>
+<h3><a name="FOOT40" href="#DOCF40">(40)</a></h3>
<a name="index-C-language-2"></a>
<p>The actual type conversions with trunction were handled by intrinsic
type conversion, so the <code>trunc()</code> function was never explicitly
called, although the results would be the same if it were.</p>
-<h3><a name="FOOT40" href="#DOCF40">(40)</a></h3>
+<h3><a name="FOOT41" href="#DOCF41">(41)</a></h3>
<p>According to Wikipedia’s summary of <acronym>IEEE</acronym> standard
754, “If a decimal string with at most 6 significant digits is
converted to IEEE 754 single-precision and then converted back to the
@@ -19943,7 +20030,7 @@ same number of significant decimal, then the final string should match
the original; and if an IEEE 754 single-precision is converted to a
decimal string with at least 9 significant decimal and then converted
back to single, then the final number must match the original”.</p>
-<h3><a name="FOOT41" href="#DOCF41">(41)</a></h3>
+<h3><a name="FOOT42" href="#DOCF42">(42)</a></h3>
<p>According to Wikipedia’s summary of <acronym>IEEE</acronym> standard
754, “If a decimal string with at most 15 significant digits is
converted to IEEE 754 double-precision representation and then converted
@@ -19952,7 +20039,7 @@ final string should match the original; and if an IEEE 754 double
precision is converted to a decimal string with at least 17 significant
digits and then converted back to double, then the final number must
match the original”.</p>
-<h3><a name="FOOT42" href="#DOCF42">(42)</a></h3>
+<h3><a name="FOOT43" href="#DOCF43">(43)</a></h3>
<p>See page 21<!-- /@w --> in Section 1.2 of the First edition for this
gem:
</p><blockquote>
@@ -19961,19 +20048,19 @@ that the implicit conversion rules are, in fact, sheer madness!
In effect, they make it impossible to write efficient numerical
programs.
</p></blockquote>
-<h3><a name="FOOT43" href="#DOCF43">(43)</a></h3>
+<h3><a name="FOOT44" href="#DOCF44">(44)</a></h3>
<p>For example, the <acronym>CMIP5</acronym> archive tends to distribute
monthly average timeseries in 50-year chunks.</p>
-<h3><a name="FOOT44" href="#DOCF44">(44)</a></h3>
+<h3><a name="FOOT45" href="#DOCF45">(45)</a></h3>
<a name="index-Michael-Prather"></a>
<p>Thanks to Michael J.<!-- /@w --> Prather for explaining this to me.</p>
-<h3><a name="FOOT45" href="#DOCF45">(45)</a></h3>
+<h3><a name="FOOT46" href="#DOCF46">(46)</a></h3>
<p>The exception is appending/altering the attributes <code>x_op</code>,
<code>y_op</code>, <code>z_op</code>, and <code>t_op</code> for variables which have been
averaged across space and time dimensions.
This feature is scheduled for future inclusion in <acronym>NCO</acronym>.
</p>
-<h3><a name="FOOT46" href="#DOCF46">(46)</a></h3>
+<h3><a name="FOOT47" href="#DOCF47">(47)</a></h3>
<p>The <acronym>CF</acronym> conventions recommend <code>time</code> be stored in the
format <var>time</var> since <var>base_time</var>, e.g., the <code>units</code>
attribute of <code>time</code> might be
@@ -19988,21 +20075,21 @@ The analogous problem has been fixed in <acronym>ARM</acronym> files
(see <a href="#ARM-Conventions">ARM Conventions</a>) and could be fixed for <acronym>CF</acronym> files if
there is sufficient lobbying.
</p>
-<h3><a name="FOOT47" href="#DOCF47">(47)</a></h3>
+<h3><a name="FOOT48" href="#DOCF48">(48)</a></h3>
<p><code>ncap2</code> is the successor to <code>ncap</code> which was
put into maintenance mode in November, 2006.
This documentation refers to <code>ncap2</code>, which has a superset of
the <code>ncap</code> functionality.
Eventually <code>ncap</code> will be deprecated in favor <code>ncap2</code>.
<code>ncap2</code> may be renamed <code>ncap</code> in 2013.</p>
-<h3><a name="FOOT48" href="#DOCF48">(48)</a></h3>
+<h3><a name="FOOT49" href="#DOCF49">(49)</a></h3>
<p>These are the <acronym>GSL</acronym> standard function names postfixed with
<code>_e</code>.
<acronym>NCO</acronym> calls these functions automatically, without the
<acronym>NCO</acronym> command having to specifically indicate the <code>_e</code>
function suffix.
</p>
-<h3><a name="FOOT49" href="#DOCF49">(49)</a></h3>
+<h3><a name="FOOT50" href="#DOCF50">(50)</a></h3>
<p>ANSI C<!-- /@w --> compilers are guaranteed to support double-precision versions
of these functions.
These functions normally operate on netCDF variables of type <code>NC_DOUBLE</code>
@@ -20019,15 +20106,15 @@ performing the operation, and then re-casting.
<acronym>NCO</acronym> uses the faster intrinsic functions when they are
available, and uses the casting method when they are not.
</p>
-<h3><a name="FOOT50" href="#DOCF50">(50)</a></h3>
+<h3><a name="FOOT51" href="#DOCF51">(51)</a></h3>
<p>Linux supports more of these intrinsic functions than
other OSs.</p>
-<h3><a name="FOOT51" href="#DOCF51">(51)</a></h3>
+<h3><a name="FOOT52" href="#DOCF52">(52)</a></h3>
<p>A naked<!-- /@w --> (i.e., unprotected or unquoted) ‘<samp>*</samp>’ is a
wildcard character.
A naked<!-- /@w --> ‘<samp>-</samp>’ may confuse the command line parser.
A naked<!-- /@w --> ‘<samp>+</samp>’ and ‘<samp>/</samp>’ are relatively harmless.</p>
-<h3><a name="FOOT52" href="#DOCF52">(52)</a></h3>
+<h3><a name="FOOT53" href="#DOCF53">(53)</a></h3>
<p>The widely used shell Bash correctly interprets all these
special characters even when they are not quoted.
That is, Bash does not prevent <acronym>NCO</acronym> from correctly interpreting
@@ -20035,30 +20122,30 @@ the intended arithmetic operation when the following arguments are given
(without quotes) to <code>ncbo</code>:
‘<samp>--op_typ=+</samp>’, ‘<samp>--op_typ=-</samp>’, ‘<samp>--op_typ=*</samp>’,
and ‘<samp>--op_typ=/</samp>’</p>
-<h3><a name="FOOT53" href="#DOCF53">(53)</a></h3>
-<p>The command to do this is ‘<samp>ln -s -f ncbo ncadd</samp>’</p>
<h3><a name="FOOT54" href="#DOCF54">(54)</a></h3>
-<p>The command to do this is ‘<samp>alias ncadd='ncbo --op_typ=add'</samp>’</p>
+<p>The command to do this is ‘<samp>ln -s -f ncbo ncadd</samp>’</p>
<h3><a name="FOOT55" href="#DOCF55">(55)</a></h3>
+<p>The command to do this is ‘<samp>alias ncadd='ncbo --op_typ=add'</samp>’</p>
+<h3><a name="FOOT56" href="#DOCF56">(56)</a></h3>
<p>Prior to <acronym>NCO</acronym> version 4.3.1 (May, 2013), <code>ncbo</code>
would only broadcast variables in <var>file_2</var> to conform to
<var>file_1</var>.
Variables in <var>file_1</var> were <em>never</em> broadcast to conform to the
dimensions in <var>file_2</var>.</p>
-<h3><a name="FOOT56" href="#DOCF56">(56)</a></h3>
+<h3><a name="FOOT57" href="#DOCF57">(57)</a></h3>
<p>This is because <code>ncra</code> collapses the record dimension
to a size of 1<!-- /@w --> (making it a <em>degenerate</em> dimension), but does
not remove it, while, unless ‘<samp>-b</samp>’ is given, <code>ncwa</code> removes
all averaged dimensions.
In other words, by default <code>ncra</code> changes variable size though
not rank, while, <code>ncwa</code> changes both variable size and rank.</p>
-<h3><a name="FOOT57" href="#DOCF57">(57)</a></h3>
+<h3><a name="FOOT58" href="#DOCF58">(58)</a></h3>
<p>The old ncea command was deprecated in <acronym>NCO</acronym> version 4.3.9,
released December, 2013.
<acronym>NCO</acronym> will attempt to maintain back-compatibility and work
as expected with invocations of <code>ncea</code> for as long as possible.
Please replace <code>ncea</code> by <code>nces</code> in all future work.</p>
-<h3><a name="FOOT58" href="#DOCF58">(58)</a></h3>
+<h3><a name="FOOT59" href="#DOCF59">(59)</a></h3>
<p>As of <acronym>NCO</acronym> version 4.4.2 (released February, 2014)
<code>nces</code> allows hyperslabs in all dimensions so long as the
hyperslabs resolve to the same size.
@@ -20068,7 +20155,7 @@ the hypserslabs may (and usually do) change the size of the dimensions
from the input to the output files.
Prior to this, <code>nces</code> was only guaranteed to work on hyperslabs
in the record dimension that resolved to the same size.</p>
-<h3><a name="FOOT59" href="#DOCF59">(59)</a></h3>
+<h3><a name="FOOT60" href="#DOCF60">(60)</a></h3>
<p>Those familiar with netCDF mechanics might wish to know what is
happening here: <code>ncks</code> does not attempt to redefine the variable
in <var>output-file</var> to match its definition in <var>input-file</var>,
@@ -20076,10 +20163,10 @@ in <var>output-file</var> to match its definition in <var>input-file</var>,
coordinate dimensions, if any, from <var>input-file</var> to
<var>output-file</var>.
</p>
-<h3><a name="FOOT60" href="#DOCF60">(60)</a></h3>
+<h3><a name="FOOT61" href="#DOCF61">(61)</a></h3>
<p>This limitation, imposed by the netCDF storage layer,
may be relaxed in the future with netCDF4.</p>
-<h3><a name="FOOT61" href="#DOCF61">(61)</a></h3>
+<h3><a name="FOOT62" href="#DOCF62">(62)</a></h3>
<p>Prior to <acronym>NCO</acronym> 4.4.0 and netCDF 4.3.1 (January, 2014),
<acronym>NCO</acronym> requires the ‘<samp>--hdf4</samp>’ switch to correctly read
HDF4 input files.
@@ -20091,38 +20178,38 @@ software necessary to workaround netCDF library flaws handling
<acronym>HDF4</acronym> files to netCDF files.
In those cases, use the <code>ncl_convert2nc</code> command distributed
with <acronym>NCL</acronym> to convert <acronym>HDF4</acronym> files to netCDF.</p>
-<h3><a name="FOOT62" href="#DOCF62">(62)</a></h3>
+<h3><a name="FOOT63" href="#DOCF63">(63)</a></h3>
<p><code>ncpdq</code> does not support packing data using the
<acronym>HDF</acronym> convention.
Although it is now straightforward to support this, we think it might
sow more confusion than it reaps.
Let us know if you disagree and would like <acronym>NCO</acronym> to support
packing data with <acronym>HDF</acronym> algorithm.</p>
-<h3><a name="FOOT63" href="#DOCF63">(63)</a></h3>
+<h3><a name="FOOT64" href="#DOCF64">(64)</a></h3>
<p>The default behavior of (‘<samp>-I</samp>’) changed on
19981201—before this date the default was not to weight or mask
coordinate variables.</p>
-<h3><a name="FOOT64" href="#DOCF64">(64)</a></h3>
+<h3><a name="FOOT65" href="#DOCF65">(65)</a></h3>
<p>If <code>lat_wgt</code> contains Gaussian weights then the value of
<code>latitude</code> in the <var>output-file</var> will be the area-weighted
centroid of the hyperslab.
For the example given, this is about 30 degrees.<!-- /@w --></p>
-<h3><a name="FOOT65" href="#DOCF65">(65)</a></h3>
+<h3><a name="FOOT66" href="#DOCF66">(66)</a></h3>
<p>The three switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and ‘<samp>-M</samp>’ are
maintained for backward compatibility and may be deprecated in the
future.
It is safest to write scripts using ‘<samp>--mask_condition</samp>’.</p>
-<h3><a name="FOOT66" href="#DOCF66">(66)</a></h3>
+<h3><a name="FOOT67" href="#DOCF67">(67)</a></h3>
<p><code>gw</code> stands for <em>Gaussian weight</em> in many
climate models.</p>
-<h3><a name="FOOT67" href="#DOCF67">(67)</a></h3>
+<h3><a name="FOOT68" href="#DOCF68">(68)</a></h3>
<p><code>ORO</code> stands for <em>Orography</em> in some climate models
and in those models <em><var>ORO</var> < 0.5</em> selects ocean gridpoints.</p>
-<h3><a name="FOOT68" href="#DOCF68">(68)</a></h3>
+<h3><a name="FOOT69" href="#DOCF69">(69)</a></h3>
<p>Unfortunately the ‘<samp>-B</samp>’ and ‘<samp>--mask_condition</samp>’
options are unsupported on Windows (with the <acronym>MVS</acronym> compiler),
which lacks a free, standard parser and lexer.</p>
-<h3><a name="FOOT69" href="#DOCF69">(69)</a></h3>
+<h3><a name="FOOT70" href="#DOCF70">(70)</a></h3>
<a name="index-chocolate"></a>
<p>Happy users have sent me a few gifts, though.
This includes a box of imported chocolate.
diff --git a/doc/nco.pdf b/doc/nco.pdf
index 530082f..61ddd62 100644
Binary files a/doc/nco.pdf and b/doc/nco.pdf differ
diff --git a/doc/nco.ps b/doc/nco.ps
index 7c5cd9c..0f4aed7 100644
--- a/doc/nco.ps
+++ b/doc/nco.ps
@@ -1,7 +1,7 @@
%!PS-Adobe-2.0
%%Creator: dvips(k) 5.993 Copyright 2013 Radical Eye Software
%%Title: nco.dvi
-%%CreationDate: Tue Apr 1 22:38:38 2014
+%%CreationDate: Wed May 21 21:31:06 2014
%%Pages: 268
%%PageOrder: Ascend
%%BoundingBox: 0 0 596 842
@@ -13,7 +13,7 @@
%DVIPSWebPage: (www.radicaleye.com)
%DVIPSCommandLine: dvips -o nco.ps nco.dvi
%DVIPSParameters: dpi=600
-%DVIPSSource: TeX output 2014.04.01:2238
+%DVIPSSource: TeX output 2014.05.21:2130
%%BeginProcSet: tex.pro 0 0
%!
/TeXDict 300 dict def TeXDict begin/N{def}def/B{bind def}N/S{exch}N/X{S
@@ -5216,6 +5216,7 @@ dup 34 /quotedbl put
dup 35 /numbersign put
dup 36 /dollar put
dup 37 /percent put
+dup 38 /ampersand put
dup 39 /quoteright put
dup 40 /parenleft put
dup 41 /parenright put
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h(the)f(selection)h(of)f(h)m(yp)s(erslab)f(elemen)m(ts)i(based)f(on)g
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(brac)m(k)m(et)i(the)f(range.)46 b(Th)m(us,)32 b(h)m(yp)s(erslabs)g(on)
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y FD(are)e(computed)f(n)m(umerically)h(rather)f(than)g(lexically)-8
b(,)34 b(so)c(the)h(results)f(are)h(unpredictable.)275
-2858 y(The)k(relativ)m(e)j(magnitude)e(of)g Fz(min)f
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FD(and)g Fz(max)43 b FD(indicate)37 b(to)f(the)g(op)s(erator)g(whether)
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b FD(\(see)c(Section)f(3.20)i([W)-8 b(rapp)s(ed)30 b(Co)s(ordinates],)h
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Fz(min)24 b Fv(>)h Fz(max)7 b FD(,)29 b(the)h FC(NCO)f
FD(exp)s(ects)g(the)g(co)s(ordinate)h(to)g(b)s(e)f(wrapp)s(ed,)e(and)i
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b(When)29 b(this)g(o)s(ccurs,)h FC(NCO)f FD(selects)i(all)g(v)-5
b(alues)29 b(outside)h(the)g(domain)f([)p Fz(max)j Fv(<)25
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b(alues)32 b(exclusiv)m(e)h(of)f(the)f(v)-5 b(alues)32
b(whic)m(h)f(w)m(ould)h(ha)m(v)m(e)g(b)s(een)f(selected)i(if)f
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(If)28 b(this)h(seems)g(confusing,)f(test)i(y)m(our)f(command)f(on)h
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(ensure)f FC(NCO)g FD(selected)i(the)e(h)m(yp)s(erslab)g(y)m(ou)h(exp)s
-(ected)150 3625 y(\(co)s(ordinate)32 b(wrapping)d(is)h(curren)m(tly)h
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y(Because)35 b(of)g(the)g(w)m(a)m(y)g(wrapp)s(ed)e(co)s(ordinates)i
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s(erslabs)g(in)h(the)g(monotonically)j(increasing)d(sense,)h(i.e.,)i
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b(if)f(the)g(underlying)f(co)s(ordinate)i(v)-5 b(ariable)24
b(is)f(monotonically)i(decreasing\).)39 b(The)23 b(only)g(exception)150
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(ecifying)g(a)g(wrapp)s(ed)f(co)s(ordinate.)47 b(The)31
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(ecause)i(the)g(p)s(oin)m(ts)f(selected)j(b)m(y)-8 b(,)26
b(e.g.,)h Fy(-d)j(longitude,50.,340.)p FD(,)21 b(are)k(exactly)i(the)
-150 4402 y(complemen)m(t)32 b(of)e(the)h(p)s(oin)m(ts)f(selected)i(b)m
-(y)e Fy(-d)g(longitude,340.,50.)p FD(.)275 4630 y(Not)h(sp)s(ecifying)g
+150 4668 y(complemen)m(t)32 b(of)e(the)h(p)s(oin)m(ts)f(selected)i(b)m
+(y)e Fy(-d)g(longitude,340.,50.)p FD(.)275 4831 y(Not)h(sp)s(ecifying)g
(an)m(y)g(h)m(yp)s(erslab)f(option)h(is)g(equiv)-5 b(alen)m(t)32
b(to)g(sp)s(ecifying)e(full)h(ranges)g(of)g(all)g(dimen-)150
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+4940 y(sions.)38 b(This)22 b(option)i(ma)m(y)f(b)s(e)g(sp)s(eci\014ed)f
(more)h(than)g(once)h(in)f(a)g(single)h(command)e(\(eac)m(h)j(h)m(yp)s
-(erslabb)s(ed)150 4850 y(dimension)30 b(requires)g(its)g(o)m(wn)h
+(erslabb)s(ed)150 5050 y(dimension)30 b(requires)g(its)g(o)m(wn)h
Fy(-d)f FD(option\).)150 5290 y FB(3.16)68 b(Stride)p
eop end
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-b FD(4.4.3)j(User)d(Guide)150 51 y Fk(\013)p 200 51 3554
+b FD(4.4.4)j(User)d(Guide)150 51 y Fk(\013)p 200 51 3554
4 v 3553 w(\010)p 150 651 4 552 v 178 188 a FD(Av)-5
b(ailabilit)m(y:)43 b Fy(ncbo)p FD(,)30 b Fy(nces)p FD(,)f
Fy(ncecat)p FD(,)g Fy(ncflint)p FD(,)g Fy(ncks)p FD(,)g
@@ -16635,9 +16685,9 @@ b(ariable)150 4055 y(represen)m(ts)29 b(time)g(in)g(these)g(\014les,)h
(in)g Fy(fl_2.nc)p FD(,)e(so)i(wh)m(y)150 4165 y(do)c(the)g(\014les)g
(app)s(ear)g(in)g(the)g(rev)m(erse)h(order)e(on)h(the)h(command)f
(line?)39 b Fy(fl_1.nc)23 b FD(is)i(the)g(last)h(\014le)f(named)150
-4275 y(b)s(ecause)e(it)g(is)g(the)g(pre-existing)g(output)g(\014le)f
-(to)i(whic)m(h)e(w)m(e)h(are)h(app)s(ending)d(all)i(of)g(the)g(other)g
-(input)f(\014les)150 4384 y(\(in)34 b(this)g(case)h(only)f
+4275 y(b)s(ecause)20 b(it)h(is)g(the)g(pre-existing)g(output)f(\014le)h
+(to)g(whic)m(h)f(w)m(e)h(will)g(app)s(end)e(all)i(the)g(other)f(input)g
+(\014les)g(listed)150 4384 y(\(in)34 b(this)g(case)h(only)f
Fy(fl_2.nc)p FD(\).)50 b(The)34 b(con)m(ten)m(ts)h(of)f
Fy(fl_1.nc)e FD(are)j(completely)h(preserv)m(ed,)e(and)g(only)150
4494 y(v)-5 b(alues)26 b(in)g Fy(fl_2.nc)d FD(\(and)j(an)m(y)g(other)g
@@ -16660,7 +16710,7 @@ b(emp)s(orary)150 5151 y(Output)29 b(Files],)j(page)f(15\):)390
eop end
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-b FD(4.4.3)j(User)d(Guide)275 299 y(This)j(a)m(v)m(oids)j(creating)f
+b FD(4.4.4)j(User)d(Guide)275 299 y(This)j(a)m(v)m(oids)j(creating)f
(an)f(in)m(termediate)i(\014le,)g(and)e(copies)h(only)f(the)h(minimal)f
(amoun)m(t)h(of)f(data)150 408 y(\(i.e.,)h(all)f(of)f
Fy(fl_2.nc)p FD(\).)46 b(Hence,)35 b(it)e(is)g(fast.)48
@@ -16828,7 +16878,7 @@ b(b)s(ecause)31 b(its)g(elemen)m(ts)h(are)f(irregularly)g(spaced)g(in)f
(co)s(ordinate)p eop end
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-b FD(4.4.3)j(User)d(Guide)150 299 y(space)g(\(and)e(presumably)g(in)h
+b FD(4.4.4)j(User)d(Guide)150 299 y(space)g(\(and)e(presumably)g(in)h
(index)g(space)g(to)s(o\).)42 b(The)28 b(m)m(ultislab)i(sp)s
(eci\014cation)g(for)f(obtaining)g(these)150 408 y(v)-5
b(alues)29 b(is)g(simply)f(the)h(union)f(of)h(the)g(h)m(yp)s(erslabs)e
@@ -16964,7 +17014,7 @@ y(Lat[0]=-45)f(Lon[1]=90)g(LatLon[1]=3)390 4792 y(Lat[0]=-45)g
(LatLon[7]=5)p eop end
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-b FD(4.4.3)j(User)d(Guide)150 299 y(There)h(are)i(other)f(w)m(ork)-5
+b FD(4.4.4)j(User)d(Guide)150 299 y(There)h(are)i(other)f(w)m(ork)-5
b(able,)33 b(v)-5 b(alid)32 b(metho)s(ds)f(to)i(accomplish)g(this)e
(rotation,)j(y)m(et)f(none)f(are)g(simpler)150 408 y(nor)43
b(more)g(e\016cien)m(t)i(than)e(utilizing)i FC(MSA)e
@@ -17143,7 +17193,7 @@ e(dim.)i(ID)g(=)h(20)f(\\)438 4463 y(\(CRD\)\(REC\))390
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+b FD(4.4.4)j(User)d(Guide)275 299 y(The)36 b Fy(coordinates)e
FD(attribute)k(lists)g(the)f(names)g(of)g(the)h(latitude)g(and)e
(longitude)i(co)s(ordinates,)150 408 y Fy(lat_gds)d FD(and)h
Fy(lon_gds)p FD(,)h(resp)s(ectiv)m(ely)-8 b(.)63 b(The)36
@@ -17309,7 +17359,7 @@ b(returns)e(the)i(appropriate)f(linear)h(scaling)g(factors)h(to)f(con)m
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-b FD(4.4.3)j(User)d(Guide)150 299 y(If)d(the)g(units)g(are)g
+b FD(4.4.4)j(User)d(Guide)150 299 y(If)d(the)g(units)g(are)g
(incommensurate)h(\(i.e.,)h(not)f(expressible)f(in)g(the)g(same)h
(fundamen)m(tal)f(MKS)g(units\),)150 408 y(or)41 b(are)h(not)f(listed)h
(in)f(the)g(UDUnits)h(database,)j(then)c(NCO)f(ab)s(orts)h(since)g(it)h
@@ -17462,7 +17512,7 @@ b(ariables)34 b(should)e(alw)m(a)m(ys)j(b)s(e)d(stored)h(with)g(MKS)g
eop end
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-b FD(4.4.3)j(User)d(Guide)150 299 y(feature)i(is)g(in)m(tended)f(to)i
+b FD(4.4.4)j(User)d(Guide)150 299 y(feature)i(is)g(in)m(tended)f(to)i
(alleviate)h(some)e(of)g(the)g FC(NCO)f FD(user's)g(pain)g(when)g
(handling)g(MKS)g(units.)44 b(It)150 408 y(connects)38
b(users)e(who)g(think)h(in)f(h)m(uman-friendly)g(units)g(\(e.g.,)k
@@ -17602,7 +17652,7 @@ FD(Short)g(options:)41 b(None)p 3803 5274 V 150 5325
a Fk(\012)p 200 5325 3554 4 v 3553 w(\011)p eop end
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-b FD(4.4.3)j(User)d(Guide)275 299 y(The)25 b(phrase)h
+b FD(4.4.4)j(User)d(Guide)275 299 y(The)25 b(phrase)h
Fz(missing)g(data)h FD(refers)f(to)g(data)h(p)s(oin)m(ts)f(that)h(are)g
(missing,)g(in)m(v)-5 b(alid,)28 b(or)e(for)g(an)m(y)h(reason)150
408 y(not)36 b(in)m(tended)g(to)h(b)s(e)f(arithmetically)i(pro)s
@@ -17814,7 +17864,7 @@ FD(\),)30 b(and)j(here)h(\()p Fy(http:)s(/)s(/)r(www)s(.)150
FD(\).)p eop end
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+b FD(4.4.4)j(User)d(Guide)275 299 y(The)23 b FC(NCO)g
FD(c)m(h)m(unking)h(implemen)m(tation)h(is)f(designed)f(to)h(b)s(e)g
(\015exible.)38 b(Users)24 b(con)m(trol)h(three)f(asp)s(ects)150
408 y(of)33 b(the)g(c)m(h)m(unking)g(implemen)m(tation.)50
@@ -17967,7 +18017,7 @@ b(of)g(rank)f Fz(R)g FD(\(i.e.,)k(with)c Fz(R)g FD(non-)630
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+b FD(4.4.4)j(User)d(Guide)630 299 y Fz(R)p FD(th)g(ro)s(ot)h(of)f
Fz(cnk)p 1256 299 28 4 v 40 w(scl)p FD(.)630 408 y Fz(cnk)p
775 408 V 40 w(map)j FD(k)m(ey)e(v)-5 b(alues:)41 b(`)p
Fy(prd)p FD(',)30 b(`)p Fy(cnk_prd)p FD(',)f(`)p Fy(map_prd)p
@@ -18112,7 +18162,7 @@ Fy(-L)d Fn(dfl_lvl)h FD(short)i(option)h(\(or)f(with)p
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+b FD(4.4.4)j(User)d(Guide)150 299 y(the)h(same)g(argumen)m(t)h(to)f
(the)g(`)p Fy(--dfl_lvl)p FD(')e(or)i(`)p Fy(--deflate)p
FD(')e(long)i(options\).)43 b(Sp)s(ecify)30 b(the)i(de\015ation)150
408 y(lev)m(el)i Fz(d\015)p 467 408 28 4 v 39 w(lvl)i
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+b FD(4.4.4)j(User)d(Guide)275 299 y(As)c(of)h FC(NCO)f
FD(v)m(ersion)h(4.2.0)i(\(Ma)m(y)-8 b(,)29 b(2012\),)h
FC(NCO)c FD(allo)m(ws)i(the)f(user)f(to)i(request)e(sp)s(eci\014c)h
(bu\013er)e(sizes)150 408 y(to)k(allo)s(cate)i(for)d(reading)g(and)g
@@ -18429,7 +18479,7 @@ Fy(--no_tmp_fl)p FD(')d(switc)m(h)k(\(see)g(Section)g(2.3)150
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4 v 3553 w(\010)p 150 541 4 442 v 178 188 a FD(Av)-5
b(ailabilit)m(y:)43 b Fy(ncap2)p FD(,)30 b Fy(ncbo)p
FD(,)f Fy(nces)p FD(,)h Fy(ncflint)p FD(,)e Fy(ncpdq)p
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(record)g(v)-5 b(ariables,)28 b(and)e Fy(ncwa)g FD(unpac)m(ks)g(all)i
(v)-5 b(ariable)27 b(whic)m(h)f(con)m(tain)i(a)g(dimension)150
408 y(to)j(b)s(e)f(a)m(v)m(eraged.)43 b(These)30 b(v)-5
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b(the)f(maxim)m(um)f(v)-5 b(alue)31 b(of)g Fv(x)f FD(\()p
Fy(-y)g(max)p FD(\))g(is)966 509 y(\026)-49 b Fv(x)1014
523 y Fg(j)1075 509 y FD(=)25 b(max[)p Fv(\026)1420 523
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(ving)h(other)g(statistical)150 2238 y(quan)m(tities)34
b(de\014ned)e(in)g FC(NCO)g FD(please)i(con)m(tact)h(the)e
FC(NCO)f FD(pro)5 b(ject)33 b(\(see)h(Section)g(1.7)f([Help)h(Requests)
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2510 y(EXAMPLES)150 2672 y(Supp)s(ose)d(y)m(ou)j(wish)e(to)i(examine)g
(the)f(v)-5 b(ariable)31 b Fy(prs_sfc\(time,lat,lon\))24
b FD(whic)m(h)30 b(con)m(tains)i(a)e(time)150 2782 y(series)35
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g(out.nc)g(out.nc)390 518 y(ncra)h(-O)g(-y)g(rmssdn)f(out.nc)g(out.nc)
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408 y(than)27 b(32,767)609 375 y Ft(21)681 408 y FD(.)40
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b(;)390 518 y(#)47 b(tpt_flt)f(=)i(0)f(;)275 690 y FD(The)30
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41 b(`)p Fy(-h)p FD(')178 407 y(Long)31 b(options:)41
@@ -20092,7 +20142,7 @@ Fp(CF)e Fs(\014les)h(if)g(there)f(is)275 5340 y(su\016cien)n(t)c(lobb)n
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408 y(treated)31 b(as)f(a)g(grid)f(prop)s(ert)m(y)-8
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b FB(netCDF)i(Arithmetic)g(Pro)t(cessor)150 436 y Fk(\013)p
200 436 3554 4 v 3553 w(\010)p 150 1163 4 679 v 178 572
a Fy(ncap2)35 b FD(understands)f(a)j(relativ)m(ely)h(full-featured)e
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540 y FA(\017)60 b FD(The)46 b(exp)s(onen)m(tiation)i(op)s(erator)f(\\)
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28 4 v 41 w(op')g(exp1)150 518 y FD(if)j(exp1)h(is)f(a)g(v)-5
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b(hand)g(casting)150 446 y FD(The)36 b(follo)m(wing)h(examples)g
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45 b FD(abilit)m(y)38 b(of)e Fy(ncap2)p FD(.)150 555
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737 y(17,18,19,20,21,22,23,24,)1631 847 y(-99,-99,-99,-99,-99,-99,)o
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b(ariable)33 b Fy(")p FD(inherits)p Fy(")f FD(attributes)h(from)f(an)g
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3064 y FA(\017)60 b FD(It)28 b(is)g(p)s(ossible)f(to)i(ha)m(v)m(e)g(a)f
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y(else)47 b({)533 518 y(stmt3;)533 628 y(stmt3a;)533
737 y(stmt3b;)390 847 y(})150 1066 y FD(F)-8 b(or)29
b(a)g(v)-5 b(ariable)29 b(or)g(attribute)g(expression)f(to)h(b)s(e)f
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b(ariable)32 b(is)e(pac)m(k)m(ed)i(to)f Fy(NC_SHORT)150
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518 y(a3_map2[$nlat]={4,3,0,2,)o(1};)390 737 y
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956 y(//)g(3,)g(5,)h(4,)f(2,)g(1)390 1066 y(//)g(8,)g(10,)g(9,7,)g(6,)
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628 y(ncks)i(~/foo.nc)275 792 y FD(Here)40 b(is)g(an)g(extended)g
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909 y(T_in[$X,$Y]=)438 1019 y({100,)f(200,)h(300,)f(400,)h(500,)485
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b(v)m(ector)g Fq(S)e FD(b)s(e)g(the)h(in)m(tersection)150
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Fy(lat)f FD(represen)m(ts)h(latitude)i(and)d(monotonically)j(increases)
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b(the)f Fy(lat)g FD(dimension)g(means)g(re-ordering)h(the)f(data)i(so)e
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b FB(netCDF)i(Record)g(Av)l(erager)150 458 y FD(SYNT)-8
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b FB(netCDF)k(Renamer)150 458 y FD(SYNT)-8 b(AX)390 620
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-150 1891 y Fr(WIN32)c Fa(:)13 b(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g
-(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)
-f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)49
-b Fs(8)2025 299 y(Windo)n(ws)9 b Fa(:)k(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g
+h(:)f(:)g(:)g(:)g(:)g(:)48 b Fs(66)2025 299 y(wildcards)9
+b Fa(:)14 b(:)f(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g
+(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)35 b Fs(28,)27 b(43,)g(153,)g(157)
+2025 387 y Fr(WIN32)c Fa(:)13 b(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g
+(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)
+h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)49
+b Fs(8)2025 475 y(Windo)n(ws)9 b Fa(:)k(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g
(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)
h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)35 b Fs(6,)27
-b(7)2025 386 y(wrapp)r(ed)f(co)r(ordinates)6 b Fa(:)15
+b(7)2025 564 y(wrapp)r(ed)f(co)r(ordinates)6 b Fa(:)15
b(:)e(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)33
-b Fs(55,)27 b(62,)g(128,)g(184)2025 474 y(wrapp)r(ed)f(\014lenames)12
+b Fs(55,)27 b(62,)g(128,)g(185)2025 652 y(wrapp)r(ed)f(\014lenames)12
b Fa(:)h(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)
g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)38 b
-Fs(29)2025 561 y Fp(WRF)13 b Fa(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g
+Fs(29)2025 740 y Fp(WRF)13 b Fa(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g
(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)
g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)40
-b Fs(129)2025 649 y(WWW)25 b(do)r(cumen)n(tation)12 b
+b Fs(129)2025 828 y(WWW)25 b(do)r(cumen)n(tation)12 b
Fa(:)i(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f
-(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)39 b Fs(5)2025 883
-y FB(X)2025 999 y Fr(xargs)9 b Fa(:)14 b(:)f(:)g(:)g(:)h(:)f(:)g(:)g(:)
+(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)39 b Fs(5)2025 1067
+y FB(X)2025 1185 y Fr(xargs)9 b Fa(:)14 b(:)f(:)g(:)g(:)h(:)f(:)g(:)g
+(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)
+g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)35 b
+Fs(20,)27 b(30)2025 1273 y Fr(xlc)10 b Fa(:)j(:)h(:)f(:)g(:)g(:)g(:)g
+(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)
+h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g
+(:)g(:)g(:)37 b Fs(6)2025 1362 y Fr(xlC)10 b Fa(:)j(:)h(:)f(:)g(:)g(:)g
+(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)
+g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f
+(:)g(:)g(:)g(:)37 b Fs(6)2025 1450 y Fp(XML)17 b Fa(:)c(:)g(:)g(:)h(:)f
+(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)
g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g
-(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)35 b Fs(20,)27
-b(30)2025 1086 y Fr(xlc)10 b Fa(:)j(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h
-(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)
-g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)37
-b Fs(6)2025 1174 y Fr(xlC)10 b Fa(:)j(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g
-(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)
-g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g
-(:)37 b Fs(6)2025 1261 y Fp(XML)17 b Fa(:)c(:)g(:)g(:)h(:)f(:)g(:)g(:)g
-(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)
-g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)45
-b Fs(179)2025 1349 y(XP)25 b(\(Microsoft)j(op)r(erating)f(system\))9
-b Fa(:)j(:)i(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)36
-b Fs(7)2025 1436 y(`)p Fr(xpl)p Fs(')22 b Fa(:)13 b(:)g(:)g(:)g(:)g(:)g
+(:)45 b Fs(179)2025 1538 y(XP)25 b(\(Microsoft)j(op)r(erating)f
+(system\))9 b Fa(:)j(:)i(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)
+g(:)g(:)36 b Fs(7)2025 1626 y(`)p Fr(xpl)p Fs(')22 b
+Fa(:)13 b(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f
+(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)
+g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)47 b Fs(72)2025 1715
+y(`)p Fr(xst)p Fs(')10 b Fa(:)k(:)f(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g
(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)
-f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g
-(:)47 b Fs(72)2025 1524 y(`)p Fr(xst)p Fs(')10 b Fa(:)k(:)f(:)g(:)g(:)h
-(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)
-g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)36
-b Fs(72,)27 b(73)2025 1774 y FB(Y)2025 1891 y Fs(Y)-6
-b(oric)n(k)17 b Fa(:)c(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g
-(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)
-f(:)g(:)g(:)g(:)g(:)g(:)44 b Fs(15,)27 b(24)p eop end
+f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)36 b Fs(72,)27
+b(73)2025 1970 y FB(Y)2025 2088 y Fs(Y)-6 b(oric)n(k)17
+b Fa(:)c(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)
+g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g
+(:)g(:)g(:)44 b Fs(15,)27 b(24)p eop end
%%Page: 262 268
TeXDict begin 262 267 bop eop end
%%Trailer
diff --git a/doc/nco.texi b/doc/nco.texi
index 5a68468..1e2831d 100644
--- a/doc/nco.texi
+++ b/doc/nco.texi
@@ -7,7 +7,7 @@
@ignore
-$Header: /cvsroot/nco/nco/doc/nco.texi,v 1.978 2014/04/02 05:40:24 zender Exp $
+$Header: /cvsroot/nco/nco/doc/nco.texi,v 1.993 2014/05/29 18:00:26 zender Exp $
Purpose: TeXInfo documentation for NCO suite
@@ -112,12 +112,12 @@ Octave TeXInfo manual shows clean TeXInfo structure
@setfilename nco.info
@c Define edition, date, ...
- at set nco-edition 4.4.3
- at set doc-edition 4.4.3
+ at set nco-edition 4.4.4
+ at set doc-edition 4.4.4
@set copyright-years 1995--2014
@set update-year 2014
- at set update-date 2 April 2014
- at set update-month April 2014
+ at set update-date 29 May 2014
+ at set update-month May 2014
@settitle @acronym{NCO} @value{nco-edition} User Guide
@@ -484,18 +484,18 @@ development.
Fortunately we could justify supporting Henry Butowsky on other research
grants until May, 2010 while he developed the key @command{ncap2}
features used in our climate research.
-And recentely the NASA ACCESS program commenced funding NCO support for
+And recently the NASA ACCESS program commenced funding NCO support for
netCDF4 group functionality.@*
Thus @acronym{NCO} will grow and evade bit-rot for the foreseeable future.
On a personal level, I continue to receive with gratitude the thanks of
@acronym{NCO} users at nearly every scientific meeting I attend.
-People introduce themselves, shake my hand and extol, sometimes rather
-effusively, these time-saving tools.
+People introduce themselves, shake my hand and often extol, sometimes
+effusively, @acronym{NCO} as time-saving tools.
These exchanges lighten me like anti-gravity.
Sometimes I daydream how many hours @acronym{NCO} has turned from grunt
work to productive research for researchers world-wide, or from research
-into early happy hours.
+into early happy-hours.
It's a cool feeling.
@c @uref{http://www.nasa.gov/mission_pages/IPY/main/PolarExploration.html,NNX07AR23G}.@*
@@ -1153,8 +1153,8 @@ You must build @acronym{NCO} with netCDF4 to obtain this support.
@cindex @code{NC_UINT}
@cindex @code{NC_INT64}
@cindex @code{NC_UINT64}
-The main netCDF4 features that NCO currently supports are the new
-atomic data types, Lempel-Ziv compression (deflation), and chunking.
+ at acronym{NCO} supports many netCDF4 features including atomic data
+types, Lempel-Ziv compression (deflation), chunking, and groups.
The new atomic data types are @code{NC_UBYTE}, @code{NC_USHORT},
@code{NC_UINT}, @code{NC_INT64}, and @code{NC_UINT64}.
Eight-byte integer support is an especially useful improvement from
@@ -1209,9 +1209,6 @@ See @ref{File Formats and Conversion} for more details.
<a name="hdf4"></a> <!-- http://nco.sf.net/nco.html#hdf4 -->
<a name="HDF4"></a> <!-- http://nco.sf.net/nco.html#HDF4 -->
@end html
- at cindex @acronym{H4CF}
- at cindex @command{h4tonccf}
- at cindex @command{ncl_convert2nc}
@cindex @acronym{HDF4}
@cindex @samp{--hdf4}
When linked to a netCDF library that was built with @acronym{HDF4}
@@ -1223,12 +1220,12 @@ files and writing them as netCDF3/netCDF4/@acronym{HDF5} files.
@acronym{NCO} can only write through the netCDF @acronym{API}, which
can only write netCDF3/netCDF4/@acronym{HDF5} files.
So @acronym{NCO} can @emph{read} @acronym{HDF4} files, perform
-manipulations and calculations, and then @emph{write} the results in
-netCDF format.
+manipulations and calculations, and then it must @emph{write} the
+results in netCDF format.
-Full support for these features is forthcoming, yet support as of
-December, 2013 is quite functional.
-For best results install @acronym{NCO} versions 4.4.0 or later on top of
+ at acronym{NCO} support for @acronym{HDF4} has been quite functional since
+December, 2013.
+For best results install @acronym{NCO} versions 4.4.0 or later on top of
netCDF versions 4.3.1 or later.
Getting to this point has been an iterative effort where Unidata
improved netCDF library capabilities in response to our requests.
@@ -1247,8 +1244,9 @@ handle @acronym{HDF4} files.
In particular, the @samp{--hdf4} switch is obsolete.
Current versions of @acronym{NCO} use netCDF to determine automatically
whether the underlying file is @acronym{HDF4}, and then take appropriate
-precautions to avoid calls not yet supported by the netCDF4 subset
- at acronym{HDF4}.
+precautions to avoid netCDF4 @acronym{API} calls that fail when applied
+to @acronym{HDF4} files (e.g., @code{nc_inq_var_chunking()},
+ at code{nc_inq_var_deflate()}).
The @samp{--hdf4} switch is supported (for backwards compatibility) yet
redundant (i.e., does no harm) with current versions of @acronym{NCO}
and netCDF.
@@ -1267,6 +1265,7 @@ types, e.g., unsigned bytes, so this procedure is the most typical.
Conversion of @acronym{HDF4} to netCDF4 as above suffices when the data
will only be processed by @acronym{NCO} and other netCDF4-aware tools.
+ at cindex @command{ncl_convert2nc}
However, many tools are not fully netCDF4-aware, and so conversion to
netCDF3 may be desirable.
Obtaining a netCDF3 file from an @acronym{HDF4} is now easy:
@@ -1283,7 +1282,7 @@ even when the @acronym{HDF4} file contains netCDF4 atomic types (e.g.,
unsigned bytes, 64-bit integers) because @acronym{NCO} can autoconvert
everything to atomic types supported by netCDF3
@footnote{
-Prior to @acronym{NCO} version 4.4.0 (January, 2014), we recommend the
+Prior to @acronym{NCO} version 4.4.0 (January, 2014), we recommended the
@command{ncl_convert2nc} tool to convert @acronym{HDF} to netCDF3 when
both these are true: @w{1. You} must have netCDF3 and @w{2. the}
@acronym{HDF} file contains netCDF4 atomic types.
@@ -1299,14 +1298,42 @@ Unsigned bytes stay unsigned bytes.
64-bit integers stay 64-bit integers.
Strings stay strings.
Hence, @command{ncks} conversions often result in smaller files than
- at command{ncl_convert2nc} conversions.
+ at command{ncl_convert2nc} conversions.}.
+
+ at cindex @code{hdf_name}
+ at cindex illegal names
+As of @acronym{NCO} version 4.4.4 (May, 2014) both
+ at command{ncl_convert2nc} and @acronym{NCO} have built-in, automatic
+workarounds to handle element names that contain characters that are
+legal in @acronym{HDF} though are illegal in @acronym{netCDF}.
+For example, slashes and leading special characters are are legal in
+ at acronym{HDF} and illegal in @acronym{netCDF} element (i.e., group,
+variable, dimension, and attribute) names.
+ at acronym{NCO} converts these forbidden characters to underscores, and
+retains the original names of variables in automatically produced
+attributes named @code{hdf_name}
+ at footnote{Two real-world examples: @acronym{NCO} translates the
+ at acronym{NASA} @acronym{CERES} dimension @code{(FOV) Footprints} to
+ at code{_FOV_ Footprints}, and
+ at code{Cloud & Aerosol, Cloud Only, Clear Sky w/Aerosol, and Clear Sky}
+(yes, the dimension name includes whitespace and special characters) to
+ at code{Cloud & Aerosol, Cloud Only, Clear Sky w_Aerosol, and Clear Sky}
+ at command{ncl_convert2nc} makes the element name netCDF-safe in a
+slightly different manner, and also stores the original name in the
+ at code{hdf_name} attribute.}.
+
+ at cindex @acronym{H4CF}
+ at cindex @command{h4tonccf}
Finally, in February 2014, we learned that the @acronym{HDF} group
-has a project called @acronym{H4CF} whose goal is to make @acronym{HDF4}
-files accessible to @acronym{CF} tools and conventions.
+has a project called @acronym{H4CF}
+(described @uref{http://hdfeos.org/software/h4cflib.php, here})
+whose goal is to make @acronym{HDF4} files accessible to @acronym{CF}
+tools and conventions.
Their project includes a tool named @command{h4tonccf} that converts
@acronym{HDF4} files to netCDF3 or netCDF4 files.
-We know of no features in @command{h4tonccf} that are not in
- at acronym{NCO}. Corrections welcome.}.
+We are not yet sure what advantages or features @command{h4tonccf} has
+that are not in @acronym{NCO}, though we suspect both methods have their
+own advantages. Corrections welcome.
@cindex @acronym{RPM}
@cindex Debian
@@ -2562,7 +2589,7 @@ The main benefits of threading so far have been to isolate the serial
from parallel portions of code.
This parallelism is now exploited by OpenMP but then runs into the I/O
bottleneck during output.
-The bottleneck could be ameliorated for large files by the use of
+The bottleneck will be ameliorated for large files by the use of
MPI-enabled calls in the netCDF4 library when the underlying filesystem
is parallel (e.g., @acronym{PVFS} or @acronym{JFS}).
Implementation of the parallel output calls in @acronym{NCO} is not a
@@ -3820,6 +3847,7 @@ versions of the netCDF standard.
build time.
@html
+<a name="x"></a> <!-- http://nco.sf.net/nco.html#x -->
<a name="grp"></a> <!-- http://nco.sf.net/nco.html#grp -->
<a name="var"></a> <!-- http://nco.sf.net/nco.html#var -->
<a name="xcl"></a> <!-- http://nco.sf.net/nco.html#xcl -->
@@ -4518,6 +4546,8 @@ drc_out="${DATA}/nco/tmp" # [sng] Output directory
flg_cf='0' # [flg] Perform CF-compliance check
cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
+# Use single quotes to pass multiple arguments to opt=${5}
+# Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
# Command line argument option parsing
if [ -n "${1}" ]; then fl_in=${1}; fi
@@ -4542,10 +4572,13 @@ for grp_in in ${grp_lst} ; do
# Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
# Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc
+ cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
+ # Use eval in case ${opt} contains multiple arguments separated by whitespace
+ eval ${cmd}
if [ ${flg_cf} = 'cf' ]; then
# cfchecker needs Conventions <= 1.5
- ncatted -h -a Conventions,global,o,c,"CF-${cf_vrs}" ${drc_out}/${grp_out}.nc
+ no_bck_sls=`echo ${drc_out}/${grp_out} | sed 's/\\\ / /g'`
+ ncatted -h -a Conventions,global,o,c,CF-${cf_vrs} ${no_bck_sls}.nc
else # !flg_cf
echo ${drc_out}/${grp_out}.nc
fi # !flg_cf
@@ -4706,12 +4739,12 @@ LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
./configure --enable-hdf4 --enable-hdf4-file-tests
make && make check && make installas
-# 4. NCO version 4.4.3. No RPM for this version. Must install by hand.
+# 4. NCO version 4.4.4. No RPM for this version. Must install by hand.
# Earlier versions of NCO are relatively useless for ncdismember
cd ${DATA}/tmp
-wget http://nco.sourceforge.net/src/nco-4.4.3.tar.gz .
-tar xvzf nco-4.4.3.tar.gz
-cd nco-4.4.3
+wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
+tar xvzf nco-4.4.4.tar.gz
+cd nco-4.4.4
./configure --prefix=${NCODIR}
make && make install
@@ -5108,7 +5141,7 @@ If the record variable represents time in these files, then the
values in @file{fl_1.nc} precede those in @file{fl_2.nc}, so why
do the files appear in the reverse order on the command line?
@file{fl_1.nc} is the last file named because it is the pre-existing
-output file to which we are appending all of the other input files
+output file to which we will append all the other input files listed
(in this case only @file{fl_2.nc}).
The contents of @file{fl_1.nc} are completely preserved, and only
values in @file{fl_2.nc} (and any other input files) are copied.
@@ -9289,10 +9322,8 @@ To stop the attribute being written use the ram_delete() method or use a bogus v
@cindex attribute propagation
@cindex attribute inheritance
@itemize @bullet
- @item Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS
-
+ @item Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS.
@item Attribute Inheritance: The LHS variable "inherits" attributes from an Input variable with the same name
-
@item It is possible to have a regular assign statement for which both propagation and inheritance occur.
@end itemize
@@ -13277,12 +13308,13 @@ DESCRIPTION
@command{ncecat} aggregates an arbitrary number of input files into a
single output file using using one of two methods.
@dfn{Record AGgregation} (@acronym{RAG}), the traditional method employed on
-netCDF3 files and still the default method, stores @var{input-files} as
-consecutive records in the @var{output-file}.
+(flat) netCDF3 files and still the default method, stores
+ at var{input-files} as consecutive records in the @var{output-file}.
@dfn{Group AGgregation} (@acronym{GAG}) stores @var{input-files} as top-level
groups in the netCDF4 @var{output-file}.
-Record Aggregation (@acronym{RAG}) makes numerous assumptions about the structure
-of input files and Group Aggregation (@acronym{GAG}) makes none.
+Record Aggregation (@acronym{RAG}) makes numerous assumptions about the
+structure of input files and Group Aggregation (@acronym{GAG}) makes
+none.
Both methods are described in detail below.
Since @command{ncecat} aggregates all the contents of the input files,
it can easily produce large output files so it is often helpful to invoke
@@ -13786,7 +13818,7 @@ ncks [-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b @var{binary-file}] [-C] [-c] [--cdl]
[-G @var{gpe_dsc}] [-g @var{grp}[, at dots{}]] [-H] [-h] [--hdn] [--hdr_pad @var{nbr}]
[-L @var{dfl_lvl}] [-l @var{path}] [-M] [-m] [--mk_rec_dmn @var{dim}] [--md5_digest]
[--no_blank] [--no_tmp_fl] [-O] [-o @var{output-file}] [-P] [-p @var{path}]
-[-Q] [-q] [-R] [-r] [--ram_all] [-s @var{format}]
+[-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s @var{format}]
[-u] [--unn] [-v @var{var}[, at dots{}]] [-X ...] [-x] [--xml]
@var{input-file} [[@var{output-file}]]
@end example
@@ -13919,6 +13951,7 @@ Features common to many operators are described in
@html
<a name="-5"></a> <!-- http://nco.sf.net/nco.html#-5 -->
+<a name="5"></a> <!-- http://nco.sf.net/nco.html#5 -->
@end html
@cindex @code{-5}
@item -5
@@ -13929,6 +13962,10 @@ and may be selected for traditional mode printing with @samp{-5}
(The switch for invocation may change to something more descriptive in
the future).
+ at html
+<a name="abc"></a> <!-- http://nco.sf.net/nco.html#abc -->
+<a name="alphabetize"></a> <!-- http://nco.sf.net/nco.html#alphabetize -->
+ at end html
@cindex alphabetization
@cindex sort alphabetically
@cindex @code{-a}
@@ -13946,6 +13983,10 @@ file.
Thus @code{-a} retains the original ordering of the variables.
Also @samp{--abc} and @samp{--alphabetize}.
+ at html
+<a name="bnr"></a> <!-- http://nco.sf.net/nco.html#bnr -->
+<a name="binary"></a> <!-- http://nco.sf.net/nco.html#binary -->
+ at end html
@cindex binary format
@cindex @code{-b}
@cindex @code{--fl_bnr}
@@ -13956,6 +13997,19 @@ Activate native machine binary output writing to binary file
@file{file}.
Also @samp{--fl_bnr} and @samp{--binary-file}.
Writing packed variables in binary format is not supported.
+Metadata is never output to the binary file.
+Examine the netCDF output file to see the variables in the binary file.
+Use the @samp{-C} switch, if necessary, to avoid wanting unwanted
+coordinates to the binary file:
+ at example
+% ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
+200
+% ls -l ~/bnr.dat
+% ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
+40
+ at end example
@html
<a name="dmn_fix_mk"></a> <!-- http://nco.sf.net/nco.html#dmn_fix_mk -->
@@ -14103,7 +14157,8 @@ See @ref{ncecat netCDF Ensemble Concatenator} and
changing variable dimensionality, including the record dimension.
@html
-<a name="prn"></a> <!-- http://nco.sf.net/nco.html#prn -->
+<a name="H"></a> <!-- http://nco.sf.net/nco.html#H -->
+<a name="data"></a> <!-- http://nco.sf.net/nco.html#data -->
@end html
@cindex @code{-H}
@cindex @code{--data}
@@ -14163,6 +14218,10 @@ lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
@end example
+ at html
+<a name="Metadata"></a> <!-- http://nco.sf.net/nco.html#Metadata -->
+<a name="M"></a> <!-- http://nco.sf.net/nco.html#M -->
+ at end html
@cindex @code{-M}
@cindex @code{--Mtd}
@cindex @code{--Metadata}
@@ -14217,6 +14276,11 @@ ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
where @code{VAs} and @code{GAs} denote variable and group/global
attributes, respectively.
+ at html
+<a name="m"></a> <!-- http://nco.sf.net/nco.html#m -->
+<a name="mtd"></a> <!-- http://nco.sf.net/nco.html#mtd -->
+<a name="metadata"></a> <!-- http://nco.sf.net/nco.html#metadata -->
+ at end html
@cindex @command{ncdump}
@cindex @code{-m}
@cindex @code{--mtd}
@@ -14241,6 +14305,11 @@ specified.
Also use @samp{-m} to turn-off copying of variable metadata to an output
file.
+ at html
+<a name="no_blank"></a> <!-- http://nco.sf.net/nco.html#no_blank -->
+<a name="noblank"></a> <!-- http://nco.sf.net/nco.html#noblank -->
+<a name="no-blank"></a> <!-- http://nco.sf.net/nco.html#no-blank -->
+ at end html
@cindex @code{--no_blank}
@cindex @code{--noblank}
@cindex @code{--no-blank}
@@ -14255,6 +14324,10 @@ To enable the old behavior of printing the numeric representation of
missing values (e.g., @code{1.0e36}), use the @samp{--no_blank} switch.
Also activated using @samp{--noblank} or @samp{--no-blank}.
+ at html
+<a name="P"></a> <!-- http://nco.sf.net/nco.html#P -->
+<a name="prn"></a> <!-- http://nco.sf.net/nco.html#prn -->
+ at end html
@cindex @code{-P}
@cindex @code{--print}
@cindex @code{--prn}
@@ -14265,6 +14338,9 @@ The @samp{-P} switch is a convenience abbreviation for
Also activated using @samp{--print} or @samp{--prn}.
This set of switches is useful for exploring file contents.
+ at html
+<a name="Q"></a> <!-- http://nco.sf.net/nco.html#Q -->
+ at end html
@cindex @code{-Q}
@item -Q
Toggle printing of dimension indices and coordinate values when printing
@@ -14273,6 +14349,10 @@ Each variable's name appears flush left in the output.
This helps locate specific variables in lists with many variables and
different dimensions.
+ at html
+<a name="q"></a> <!-- http://nco.sf.net/nco.html#q -->
+<a name="quiet"></a> <!-- http://nco.sf.net/nco.html#quiet -->
+ at end html
@cindex @code{-q}
@cindex @code{--quiet}
@cindex quiet
@@ -14286,6 +14366,34 @@ This allows @command{ncks} to retrieve remote files without
automatically trying to print them.
Also @samp{--quiet}.
+ at html
+<a name="rad"></a> <!-- http://nco.sf.net/nco.html#rad -->
+<a name="orphan"></a> <!-- http://nco.sf.net/nco.html#orphan -->
+<a name="rph_dmn"></a> <!-- http://nco.sf.net/nco.html#rph_dmn -->
+ at end html
+ at cindex @code{--rad}
+ at cindex orphan dimensions
+ at cindex @code{--retain_all_dimensions}
+ at cindex @code{--orphan_dimensions}
+ at cindex @code{--rph_dmn}
+ at item --rad
+Retain all dimensions.
+When invoked with @code{--rad} (Retain All Dimensions),
+ at command{ncks} copies each dimension in the input file to the output
+file, regardless of whether the dimension is utilized by any variables.
+Normally @command{ncks} discards ``orphan dimensions'', i.e., dimensions
+not referenced by any variables.
+This switch allows users to keep non-referenced dimensions in the workflow.
+When invoked in printing mode, causes orphaned dimensions to be printed
+(they are not printed by default).
+Also @samp{--retain_all_dimensions}, @samp{--orphan_dimensions}, and
+ at samp{--rph_dmn}.
+
+ at html
+<a name="s"></a> <!-- http://nco.sf.net/nco.html#s -->
+<a name="sng_fmt"></a> <!-- http://nco.sf.net/nco.html#sng_fmt -->
+<a name="string"></a> <!-- http://nco.sf.net/nco.html#string -->
+ at end html
@cindex @code{-s}
@cindex @code{--string}
@cindex @code{--sng_fmt}
@@ -14296,6 +14404,10 @@ String format for text output.
Accepts @w{C language} escape sequences and @code{printf()} formats.
Also @samp{--string} and @samp{--sng_fmt}.
+ at html
+<a name="units"></a> <!-- http://nco.sf.net/nco.html#units -->
+<a name="u"></a> <!-- http://nco.sf.net/nco.html#u -->
+ at end html
@cindex @code{-u}
@cindex @code{--units}
@item -u
@@ -16898,12 +17010,8 @@ The first example shows how to process flat files.
@verbatiminclude xmp/glb_avg.sh
@end example
-With the use of @key{group}, the above script
-will be shortened to just @w{ONE LINE}.
+With the use of @key{group}, the above script will be shortened to @w{ONE LINE}.
@cindex groups, averaging
- at ignore
-Isn't it amazing or what?!
- at end ignore
@example
# Data from cmb_fl_grp.sh
# ensemble averaging
diff --git a/doc/nco.txt b/doc/nco.txt
index acf7f21..63a35e5 100644
--- a/doc/nco.txt
+++ b/doc/nco.txt
@@ -191,8 +191,8 @@ illustrates NCO use with examples from the field of climate modeling and
analysis. The NCO homepage is <http://nco.sf.net>, and there is a
mirror at <http://dust.ess.uci.edu/nco>.
- This documentation is for NCO version 4.4.3. It was last updated 2
-April 2014. Corrections, additions, and rewrites of this documentation
+ This documentation is for NCO version 4.4.4. It was last updated 20
+May 2014. Corrections, additions, and rewrites of this documentation
are very welcome.
Enjoy,
@@ -353,7 +353,7 @@ Detailed instructions about how to download the newest version
descriptions of Known Problems (http://nco.sf.net/#bug) etc. are on our
homepage (<http://nco.sf.net/>).
- There are twelve operators in the current version (4.4.3). The
+ There are twelve operators in the current version (4.4.4). The
function of each is explained in *note Operator Reference Manual:
Operator Reference Manual. Many of the tasks that NCO can accomplish
are described during the explanation of common NCO Features (*note
@@ -624,14 +624,14 @@ released in June, 2009. Support for additional netCDF4 features has
been incremental. We add one netCDF4 feature at a time. You must build
NCO with netCDF4 to obtain this support.
- The main netCDF4 features that NCO currently supports are the new
-atomic data types, Lempel-Ziv compression (deflation), and chunking.
-The new atomic data types are 'NC_UBYTE', 'NC_USHORT', 'NC_UINT',
-'NC_INT64', and 'NC_UINT64'. Eight-byte integer support is an
-especially useful improvement from netCDF3. All NCO operators support
-these types, e.g., 'ncks' copies and prints them, 'ncra' averages them,
-and 'ncap2' processes algebraic scripts with them. 'ncks' prints
-compression information, if any, to screen.
+ NCO supports many netCDF4 features including atomic data types,
+Lempel-Ziv compression (deflation), chunking, and groups. The new
+atomic data types are 'NC_UBYTE', 'NC_USHORT', 'NC_UINT', 'NC_INT64',
+and 'NC_UINT64'. Eight-byte integer support is an especially useful
+improvement from netCDF3. All NCO operators support these types, e.g.,
+'ncks' copies and prints them, 'ncra' averages them, and 'ncap2'
+processes algebraic scripts with them. 'ncks' prints compression
+information, if any, to screen.
NCO version 3.9.1 (June, 2007) added support for netCDF4 Lempel-Ziv
deflation. Lempel-Ziv deflation is a lossless compression technique.
@@ -666,28 +666,28 @@ netCDF4. See *note File Formats and Conversion:: for more details.
NCO automatically supports reading HDF4 files and writing them as
netCDF3/netCDF4/HDF5 files. NCO can only write through the netCDF API,
which can only write netCDF3/netCDF4/HDF5 files. So NCO can _read_ HDF4
-files, perform manipulations and calculations, and then _write_ the
-results in netCDF format.
-
- Full support for these features is forthcoming, yet support as of
-December, 2013 is quite functional. For best results install NCO
-versions 4.4.0 or later on top of netCDF versions 4.3.1 or later.
-Getting to this point has been an iterative effort where Unidata
-improved netCDF library capabilities in response to our requests. NCO
-versions 4.3.6 and earlier do not explicitly support HDF4, yet should
-work with HDF4 if compiled with a version of netCDF (4.3.2 or later?)
-that does not unexpectedly die when probing HDF4 files with standard
-netCDF calls. NCO versions 4.3.7-4.3.9 (October-December, 2013) use a
-special flag to workaround netCDF HDF4 issues. The user must tell these
-versions of NCO that an input file is HDF4 format by using the '--hdf4'
-switch.
+files, perform manipulations and calculations, and then it must _write_
+the results in netCDF format.
+
+ NCO support for HDF4 has been quite functional since December, 2013.
+For best results install NCO versions 4.4.0 or later on top of netCDF
+versions 4.3.1 or later. Getting to this point has been an iterative
+effort where Unidata improved netCDF library capabilities in response to
+our requests. NCO versions 4.3.6 and earlier do not explicitly support
+HDF4, yet should work with HDF4 if compiled with a version of netCDF
+(4.3.2 or later?) that does not unexpectedly die when probing HDF4
+files with standard netCDF calls. NCO versions 4.3.7-4.3.9
+(October-December, 2013) use a special flag to workaround netCDF HDF4
+issues. The user must tell these versions of NCO that an input file is
+HDF4 format by using the '--hdf4' switch.
When compiled with netCDF version 4.3.1 (20140116) or later, NCO
versions 4.4.0 (January, 2014) and later more gracefully handle HDF4
files. In particular, the '--hdf4' switch is obsolete. Current
versions of NCO use netCDF to determine automatically whether the
underlying file is HDF4, and then take appropriate precautions to avoid
-calls not yet supported by the netCDF4 subset HDF4. The '--hdf4' switch
+netCDF4 API calls that fail when applied to HDF4 files (e.g.,
+'nc_inq_var_chunking()', 'nc_inq_var_deflate()'). The '--hdf4' switch
is supported (for backwards compatibility) yet redundant (i.e., does no
harm) with current versions of NCO and netCDF.
@@ -716,6 +716,24 @@ when the HDF4 file contains netCDF4 atomic types (e.g., unsigned bytes,
64-bit integers) because NCO can autoconvert everything to atomic types
supported by netCDF3 (4).
+ As of NCO version 4.4.4 (May, 2014) both 'ncl_convert2nc' and NCO
+have built-in, automatic workarounds to handle element names that
+contain characters that are legal in HDF though are illegal in netCDF.
+For example, slashes and leading special characters are are legal in HDF
+and illegal in netCDF element (i.e., group, variable, dimension, and
+attribute) names. NCO converts these forbidden characters to
+underscores, and retains the original names of variables in
+automatically produced attributes named 'hdf_name' (5).
+
+ Finally, in February 2014, we learned that the HDF group has a
+project called H4CF (described here
+(http://hdfeos.org/software/h4cflib.php)) whose goal is to make HDF4
+files accessible to CF tools and conventions. Their project includes a
+tool named 'h4tonccf' that converts HDF4 files to netCDF3 or netCDF4
+files. We are not yet sure what advantages or features 'h4tonccf' has
+that are not in NCO, though we suspect both methods have their own
+advantages. Corrections welcome.
+
As of 2012, netCDF4 is relatively stable software. Problems with
netCDF4 and HDF libraries have mainly been fixed. Binary NCO
distributions shipped as RPMs and as debs have used the netCDF4 library
@@ -753,7 +771,7 @@ trouble.
(3) The procedure for doing this is documented at
<http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html>.
- (4) Prior to NCO version 4.4.0 (January, 2014), we recommend the
+ (4) Prior to NCO version 4.4.0 (January, 2014), we recommended the
'ncl_convert2nc' tool to convert HDF to netCDF3 when both these are
true: 1. You must have netCDF3 and 2. the HDF file contains netCDF4
atomic types. More recent versions of NCO handle this problem fine, so
@@ -764,12 +782,15 @@ In contrast, 'ncks' will happily convert HDF straight to netCDF4 files
with netCDF4 types. Hence 'ncks' can and does preserve the variable
types. Unsigned bytes stay unsigned bytes. 64-bit integers stay 64-bit
integers. Strings stay strings. Hence, 'ncks' conversions often result
-in smaller files than 'ncl_convert2nc' conversions. Finally, in
-February 2014, we learned that the HDF group has a project called H4CF
-whose goal is to make HDF4 files accessible to CF tools and conventions.
-Their project includes a tool named 'h4tonccf' that converts HDF4 files
-to netCDF3 or netCDF4 files. We know of no features in 'h4tonccf' that
-are not in NCO. Corrections welcome.
+in smaller files than 'ncl_convert2nc' conversions.
+
+ (5) Two real-world examples: NCO translates the NASA CERES dimension
+'(FOV) Footprints' to '_FOV_ Footprints', and 'Cloud & Aerosol, Cloud
+Only, Clear Sky w/Aerosol, and Clear Sky' (yes, the dimension name
+includes whitespace and special characters) to 'Cloud & Aerosol, Cloud
+Only, Clear Sky w_Aerosol, and Clear Sky' 'ncl_convert2nc' makes the
+element name netCDF-safe in a slightly different manner, and also stores
+the original name in the 'hdf_name' attribute.
1.7 Help Requests and Bug Reports
=================================
@@ -1508,7 +1529,7 @@ where 'ncwa', 'ncpdq', and 'ncap2' (with long scripts) will complete
faster due to threading. The main benefits of threading so far have
been to isolate the serial from parallel portions of code. This
parallelism is now exploited by OpenMP but then runs into the I/O
-bottleneck during output. The bottleneck could be ameliorated for large
+bottleneck during output. The bottleneck will be ameliorated for large
files by the use of MPI-enabled calls in the netCDF4 library when the
underlying filesystem is parallel (e.g., PVFS or JFS). Implementation
of the parallel output calls in NCO is not a goal of our current funding
@@ -2787,6 +2808,8 @@ specified by the second argument:
flg_cf='0' # [flg] Perform CF-compliance check
cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
+ # Use single quotes to pass multiple arguments to opt=${5}
+ # Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
# Command line argument option parsing
if [ -n "${1}" ]; then fl_in=${1}; fi
@@ -2811,7 +2834,9 @@ specified by the second argument:
# Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
# Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc
+ cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
+ # Use eval in case ${opt} contains multiple arguments separated by whitespace
+ eval ${cmd}
if [ ${flg_cf} = 'cf' ]; then
# cfchecker needs Conventions <= 1.5
ncatted -h -a Conventions,global,o,c,"CF-${cf_vrs}" ${drc_out}/${grp_out}.nc
@@ -2945,12 +2970,12 @@ necessary to check HDF files for CF-compliance:
./configure --enable-hdf4 --enable-hdf4-file-tests
make && make check && make installas
- # 4. NCO version 4.4.3. No RPM for this version. Must install by hand.
+ # 4. NCO version 4.4.4. No RPM for this version. Must install by hand.
# Earlier versions of NCO are relatively useless for ncdismember
cd ${DATA}/tmp
- wget http://nco.sourceforge.net/src/nco-4.4.3.tar.gz .
- tar xvzf nco-4.4.3.tar.gz
- cd nco-4.4.3
+ wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
+ tar xvzf nco-4.4.4.tar.gz
+ cd nco-4.4.4
./configure --prefix=${NCODIR}
make && make install
@@ -3239,17 +3264,17 @@ be appended to the end of the corresponding records in 'fl_1.nc':
the record variable represents time in these files, then the values in
'fl_1.nc' precede those in 'fl_2.nc', so why do the files appear in the
reverse order on the command line? 'fl_1.nc' is the last file named
-because it is the pre-existing output file to which we are appending all
-of the other input files (in this case only 'fl_2.nc'). The contents of
-'fl_1.nc' are completely preserved, and only values in 'fl_2.nc' (and
-any other input files) are copied. This switch avoids the necessity of
-copying all of 'fl_1.nc' through the netCDF interface to a new output
-file. The '--rec_apn' switch automatically puts NCO into append mode
-(*note Appending Variables::), so specifying '-A' is redundant, and
-simultaneously specifying overwrite mode with '-O' causes an error. By
-default, NCO works in an intermediate temporary file. Power users may
-combine '--rec_apn' with the '--no_tmp_fl' switch (*note Temporary
-Output Files::):
+because it is the pre-existing output file to which we will append all
+the other input files listed (in this case only 'fl_2.nc'). The
+contents of 'fl_1.nc' are completely preserved, and only values in
+'fl_2.nc' (and any other input files) are copied. This switch avoids
+the necessity of copying all of 'fl_1.nc' through the netCDF interface
+to a new output file. The '--rec_apn' switch automatically puts NCO
+into append mode (*note Appending Variables::), so specifying '-A' is
+redundant, and simultaneously specifying overwrite mode with '-O' causes
+an error. By default, NCO works in an intermediate temporary file.
+Power users may combine '--rec_apn' with the '--no_tmp_fl' switch (*note
+Temporary Output Files::):
ncrcat --rec_apn --no_tmp_fl fl_2.nc fl_1.nc
This avoids creating an intermediate file, and copies only the
minimal amount of data (i.e., all of 'fl_2.nc'). Hence, it is fast. We
@@ -5980,11 +6005,9 @@ use the ram_delete() method or use a bogus variable name.
*Attribute Propagation and Inheritance*
* Attribute propagation occurs in a regular assign statement. The
variable being defined on the LHS gets copies of the attributes
- from the leftermost variable on the RHS
-
+ from the leftermost variable on the RHS.
* Attribute Inheritance: The LHS variable "inherits" attributes from
an Input variable with the same name
-
* It is possible to have a regular assign statement for which both
propagation and inheritance occur.
@@ -8807,15 +8830,15 @@ DESCRIPTION
'ncecat' aggregates an arbitrary number of input files into a single
output file using using one of two methods. "Record AGgregation" (RAG),
-the traditional method employed on netCDF3 files and still the default
-method, stores INPUT-FILES as consecutive records in the OUTPUT-FILE.
-"Group AGgregation" (GAG) stores INPUT-FILES as top-level groups in the
-netCDF4 OUTPUT-FILE. Record Aggregation (RAG) makes numerous
-assumptions about the structure of input files and Group Aggregation
-(GAG) makes none. Both methods are described in detail below. Since
-'ncecat' aggregates all the contents of the input files, it can easily
-produce large output files so it is often helpful to invoke subsetting
-simultaneously (*note Subsetting Files::).
+the traditional method employed on (flat) netCDF3 files and still the
+default method, stores INPUT-FILES as consecutive records in the
+OUTPUT-FILE. "Group AGgregation" (GAG) stores INPUT-FILES as top-level
+groups in the netCDF4 OUTPUT-FILE. Record Aggregation (RAG) makes
+numerous assumptions about the structure of input files and Group
+Aggregation (GAG) makes none. Both methods are described in detail
+below. Since 'ncecat' aggregates all the contents of the input files,
+it can easily produce large output files so it is often helpful to
+invoke subsetting simultaneously (*note Subsetting Files::).
RAG makes each variable (except coordinate variables) in each input
file into a single record of the same variable in the output file.
@@ -9110,7 +9133,7 @@ SYNTAX
[-G GPE_DSC] [-g GRP[,...]] [-H] [-h] [--hdn] [--hdr_pad NBR]
[-L DFL_LVL] [-l PATH] [-M] [-m] [--mk_rec_dmn DIM] [--md5_digest]
[--no_blank] [--no_tmp_fl] [-O] [-o OUTPUT-FILE] [-P] [-p PATH]
- [-Q] [-q] [-R] [-r] [--ram_all] [-s FORMAT]
+ [-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s FORMAT]
[-u] [--unn] [-v VAR[,...]] [-X ...] [-x] [--xml]
INPUT-FILE [[OUTPUT-FILE]]
@@ -9225,7 +9248,18 @@ features::.
'-b 'file''
Activate native machine binary output writing to binary file
'file'. Also '--fl_bnr' and '--binary-file'. Writing packed
- variables in binary format is not supported.
+ variables in binary format is not supported. Metadata is never
+ output to the binary file. Examine the netCDF output file to see
+ the variables in the binary file. Use the '-C' switch, if
+ necessary, to avoid wanting unwanted coordinates to the binary
+ file:
+ % ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+ % ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
+ 200
+ % ls -l ~/bnr.dat
+ % ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+ % ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
+ 40
'--fix_rec_dmn'
Change record dimension DIM in the input file into a fixed
@@ -9441,6 +9475,17 @@ features::.
'ncks' to retrieve remote files without automatically trying to
print them. Also '--quiet'.
+'--rad'
+ Retain all dimensions. When invoked with '--rad' (Retain All
+ Dimensions), 'ncks' copies each dimension in the input file to the
+ output file, regardless of whether the dimension is utilized by any
+ variables. Normally 'ncks' discards "orphan dimensions", i.e.,
+ dimensions not referenced by any variables. This switch allows
+ users to keep non-referenced dimensions in the workflow. When
+ invoked in printing mode, causes orphaned dimensions to be printed
+ (they are not printed by default). Also '--retain_all_dimensions',
+ '--orphan_dimensions', and '--rph_dmn'.
+
'-s FORMAT'
String format for text output. Accepts C language escape sequences
and 'printf()' formats. Also '--string' and '--sng_fmt'.
@@ -11253,7 +11298,7 @@ steps include:
echo Var ${var[var_id]} done!
done
- With the use of <group>, the above script will be shortened to just
+ With the use of <group>, the above script will be shortened to
ONE LINE.
# Data from cmb_fl_grp.sh
# ensemble averaging
@@ -12326,925 +12371,933 @@ General Index
* Menu:
* '"' (double quote): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '#include': Syntax of ncap2 statements.
- (line 5569)
-* '$' (wildcard character): Subsetting Files. (line 2516)
+ (line 5594)
+* '$' (wildcard character): Subsetting Files. (line 2537)
* '%' (modulus): Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* ''' (end quote): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '*': ncbo netCDF Binary Operator.
- (line 8445)
-* '*' (filename expansion): Subsetting Files. (line 2516)
+ (line 8468)
+* '*' (filename expansion): Subsetting Files. (line 2537)
* '*' (multiplication): Intrinsic mathematical methods.
- (line 7903)
-* '*' (wildcard character): Subsetting Files. (line 2523)
+ (line 7926)
+* '*' (wildcard character): Subsetting Files. (line 2544)
* '+': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* '+' (addition): Intrinsic mathematical methods.
- (line 7903)
-* '+' (wildcard character): Subsetting Files. (line 2523)
+ (line 7926)
+* '+' (wildcard character): Subsetting Files. (line 2544)
* '-': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* '-' (subtraction): Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* '--3': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--4': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--6': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--64bit': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--7': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--abc': ncks netCDF Kitchen Sink.
- (line 9271)
+ (line 9294)
* '--alphabetize': ncks netCDF Kitchen Sink.
- (line 9271)
+ (line 9294)
* '--apn': Temporary Output Files.
- (line 970)
-* '--apn' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '--apn' <1>: Batch Mode. (line 5252)
* '--apn' <2>: Filters for 'ncks'.
- (line 9699)
+ (line 9744)
* '--append': Temporary Output Files.
- (line 970)
-* '--append' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '--append' <1>: Batch Mode. (line 5252)
* '--append' <2>: Filters for 'ncks'.
- (line 9699)
+ (line 9744)
* '--auxiliary': Auxiliary Coordinates.
- (line 3559)
+ (line 3584)
* '--auxiliary LON_MIN,LON_MAX,LAT_MIN,LAT_MAX': Auxiliary Coordinates.
- (line 3559)
-* '--bfr_sz_hnt': Buffer sizes. (line 4330)
+ (line 3584)
+* '--bfr_sz_hnt': Buffer sizes. (line 4355)
* '--binary': ncks netCDF Kitchen Sink.
- (line 9281)
+ (line 9304)
* '--bnr': ncks netCDF Kitchen Sink.
- (line 9281)
+ (line 9304)
* '--cdl': ncks netCDF Kitchen Sink.
- (line 9323)
-* '--cell_methods': CF Conventions. (line 5383)
-* '--chunk_byte': Chunking. (line 4027)
-* '--chunk_dimension': Chunking. (line 4027)
-* '--chunk_map': Chunking. (line 4027)
-* '--chunk_policy': Chunking. (line 4027)
-* '--chunk_scalar': Chunking. (line 4027)
-* '--cll_mth': CF Conventions. (line 5383)
-* '--cnk_byt': Chunking. (line 4027)
-* '--cnk_dmn': Chunking. (line 4027)
-* '--cnk_map': Chunking. (line 4027)
-* '--cnk_map CNK_MAP': Chunking. (line 4104)
-* '--cnk_plc': Chunking. (line 4027)
-* '--cnk_scl': Chunking. (line 4027)
+ (line 9357)
+* '--cell_methods': CF Conventions. (line 5408)
+* '--chunk_byte': Chunking. (line 4052)
+* '--chunk_dimension': Chunking. (line 4052)
+* '--chunk_map': Chunking. (line 4052)
+* '--chunk_policy': Chunking. (line 4052)
+* '--chunk_scalar': Chunking. (line 4052)
+* '--cll_mth': CF Conventions. (line 5408)
+* '--cnk_byt': Chunking. (line 4052)
+* '--cnk_dmn': Chunking. (line 4052)
+* '--cnk_map': Chunking. (line 4052)
+* '--cnk_map CNK_MAP': Chunking. (line 4129)
+* '--cnk_plc': Chunking. (line 4052)
+* '--cnk_scl': Chunking. (line 4052)
* '--coords': Subsetting Coordinate Variables.
- (line 2593)
-* '--coords' <1>: CF Conventions. (line 5372)
+ (line 2614)
+* '--coords' <1>: CF Conventions. (line 5397)
* '--crd': Subsetting Coordinate Variables.
- (line 2593)
-* '--crd' <1>: CF Conventions. (line 5372)
+ (line 2614)
+* '--crd' <1>: CF Conventions. (line 5397)
* '--create_ram': Temporary Output Files.
- (line 928)
-* '--create_ram' <1>: RAM disks. (line 4361)
+ (line 949)
+* '--create_ram' <1>: RAM disks. (line 4386)
* '--data': ncks netCDF Kitchen Sink.
- (line 9371)
+ (line 9405)
* '--dbg_lvl DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 843)
-* '--dbg_lvl DEBUG-LEVEL' <1>: Large Datasets. (line 1302)
+ (line 864)
+* '--dbg_lvl DEBUG-LEVEL' <1>: Large Datasets. (line 1323)
* '--dbg_lvl DEBUG-LEVEL' <2>: Command Line Options.
- (line 1585)
+ (line 1606)
* '--dbl': Promoting Single-precision to Double.
- (line 4874)
+ (line 4899)
* '--debug-level DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 843)
-* '--debug-level DEBUG-LEVEL' <1>: Large Datasets. (line 1302)
-* '--deflate': Deflation. (line 4223)
-* '--dfl_lvl': Deflation. (line 4223)
-* '--dimension DIM,[MIN],[MAX],STRIDE': Stride. (line 3177)
+ (line 864)
+* '--debug-level DEBUG-LEVEL' <1>: Large Datasets. (line 1323)
+* '--deflate': Deflation. (line 4248)
+* '--dfl_lvl': Deflation. (line 4248)
+* '--dimension DIM,[MIN],[MAX],STRIDE': Stride. (line 3202)
* '--dimension DIM,[MIN],[MAX],[STRIDE],[SUBCYCLE]': Subcycle.
- (line 3289)
-* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3073)
+ (line 3314)
+* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3098)
* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs.
- (line 3365)
+ (line 3390)
* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3509)
+ (line 3534)
* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support.
- (line 3669)
+ (line 3694)
* '--diskless_all': Memory Requirements.
- (line 1313)
-* '--diskless_all' <1>: RAM disks. (line 4361)
-* '--dmn DIM,[MIN],[MAX],STRIDE': Stride. (line 3177)
-* '--dmn DIM,[MIN],[MAX],[STRIDE],SUBCYCLE]': Subcycle. (line 3289)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3073)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3365)
+ (line 1334)
+* '--diskless_all' <1>: RAM disks. (line 4386)
+* '--dmn DIM,[MIN],[MAX],STRIDE': Stride. (line 3202)
+* '--dmn DIM,[MIN],[MAX],[STRIDE],SUBCYCLE]': Subcycle. (line 3314)
+* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3098)
+* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3390)
* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3509)
+ (line 3534)
* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support.
- (line 3669)
+ (line 3694)
* '--ensemble_file': nces netCDF Ensemble Statistics.
- (line 8736)
+ (line 8759)
* '--ensemble_group': nces netCDF Ensemble Statistics.
- (line 8736)
+ (line 8759)
* '--ensemble_suffix': nces netCDF Ensemble Statistics.
- (line 8736)
-* '--exclude': Subsetting Files. (line 2350)
+ (line 8759)
+* '--exclude': Subsetting Files. (line 2371)
* '--exclude' <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* '--file_format': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--file_list': File List Attributes.
- (line 5275)
-* '--fix_rec_dmn all': Autoconversion. (line 2281)
+ (line 5300)
+* '--fix_rec_dmn all': Autoconversion. (line 2302)
* '--fix_rec_dmn DIM': ncks netCDF Kitchen Sink.
- (line 9286)
+ (line 9320)
* '--flt': Promoting Single-precision to Double.
- (line 4874)
+ (line 4899)
* '--fl_bnr': ncks netCDF Kitchen Sink.
- (line 9281)
+ (line 9304)
* '--fl_fmt': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--fl_lst_in': File List Attributes.
- (line 5275)
+ (line 5300)
* '--fl_out FL_OUT': Specifying Output Files.
- (line 1744)
+ (line 1765)
* '--fl_spt': ncap2 netCDF Arithmetic Processor.
- (line 5507)
+ (line 5532)
* '--fnc_tbl': Intrinsic mathematical methods.
- (line 8010)
+ (line 8033)
* '--fortran': C and Fortran Index Conventions.
- (line 3036)
+ (line 3061)
* '--gag': ncecat netCDF Ensemble Concatenator.
- (line 8908)
-* '--gag' <1>: Combine Files. (line 11113)
+ (line 8931)
+* '--gag' <1>: Combine Files. (line 11158)
* '--glb_mtd_spp': ncecat netCDF Ensemble Concatenator.
- (line 8934)
+ (line 8957)
* '--gpe GPE_DSC': Group Path Editing.
- (line 2618)
-* '--group GRP': Subsetting Files. (line 2350)
-* '--grp GRP': Subsetting Files. (line 2350)
+ (line 2639)
+* '--group GRP': Subsetting Files. (line 2371)
+* '--grp GRP': Subsetting Files. (line 2371)
* '--hdf4': netCDF2/3/4 and HDF4/5 Support.
(line 674)
-* '--hdf_unpack': Packed data. (line 4448)
-* '--hdf_upk': Packed data. (line 4448)
+* '--hdf_unpack': Packed data. (line 4473)
+* '--hdf_upk': Packed data. (line 4473)
* '--hdn': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '--hdr_pad HDR_PAD': Metadata Optimization.
- (line 1483)
+ (line 1504)
* '--header_pad HDR_PAD': Metadata Optimization.
- (line 1483)
+ (line 1504)
* '--hidden': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '--hieronymus': ncks netCDF Kitchen Sink.
- (line 9371)
-* '--history': History Attribute. (line 5247)
-* '--hst': History Attribute. (line 5247)
-* '--intersection': Subsetting Files. (line 2441)
-* '--lcl OUTPUT-PATH': Remote storage. (line 1776)
-* '--local OUTPUT-PATH': Remote storage. (line 1776)
-* '--map CNK_MAP': Chunking. (line 4104)
+ (line 9405)
+* '--history': History Attribute. (line 5272)
+* '--hst': History Attribute. (line 5272)
+* '--intersection': Subsetting Files. (line 2462)
+* '--lcl OUTPUT-PATH': Remote storage. (line 1797)
+* '--local OUTPUT-PATH': Remote storage. (line 1797)
+* '--map CNK_MAP': Chunking. (line 4129)
* '--map PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 9908)
-* '--mask-value MASK_VAL': Mask condition. (line 10616)
+ (line 9953)
+* '--mask-value MASK_VAL': Mask condition. (line 10661)
* '--mask-variable MASK_VAR': ncwa netCDF Weighted Averager.
- (line 10548)
-* '--mask_comparator MASK_COMP': Mask condition. (line 10602)
+ (line 10593)
+* '--mask_comparator MASK_COMP': Mask condition. (line 10647)
* '--mask_condition MASK_COND': ncwa netCDF Weighted Averager.
- (line 10548)
-* '--mask_condition MASK_COND' <1>: Mask condition. (line 10602)
-* '--mask_value MASK_VAL': Mask condition. (line 10616)
+ (line 10593)
+* '--mask_condition MASK_COND' <1>: Mask condition. (line 10647)
+* '--mask_value MASK_VAL': Mask condition. (line 10661)
* '--mask_variable MASK_VAR': ncwa netCDF Weighted Averager.
- (line 10548)
-* '--md5_dgs': MD5 digests. (line 4260)
-* '--md5_digest': MD5 digests. (line 4260)
-* '--md5_write_attribute': MD5 digests. (line 4260)
-* '--md5_wrt_att': MD5 digests. (line 4260)
+ (line 10593)
+* '--md5_dgs': MD5 digests. (line 4285)
+* '--md5_digest': MD5 digests. (line 4285)
+* '--md5_write_attribute': MD5 digests. (line 4285)
+* '--md5_wrt_att': MD5 digests. (line 4285)
* '--Metadata': ncks netCDF Kitchen Sink.
- (line 9416)
+ (line 9450)
* '--metadata': ncks netCDF Kitchen Sink.
- (line 9459)
+ (line 9493)
* '--mk_rec_dmn DIM': ncecat netCDF Ensemble Concatenator.
- (line 8993)
+ (line 9016)
* '--mk_rec_dmn DIM' <1>: ncks netCDF Kitchen Sink.
- (line 9363)
+ (line 9397)
* '--mrd': Multiple Record Dimensions.
- (line 3876)
-* '--mro': Subcycle. (line 3289)
-* '--msa': Multislabs. (line 3365)
-* '--msa_user_order': Multislabs. (line 3365)
-* '--msa_usr_rdr': Multislabs. (line 3365)
-* '--msk_cmp_typ MASK_COMP': Mask condition. (line 10602)
+ (line 3901)
+* '--mro': Subcycle. (line 3314)
+* '--msa': Multislabs. (line 3390)
+* '--msa_user_order': Multislabs. (line 3390)
+* '--msa_usr_rdr': Multislabs. (line 3390)
+* '--msk_cmp_typ MASK_COMP': Mask condition. (line 10647)
* '--msk_cnd MASK_COND': ncwa netCDF Weighted Averager.
- (line 10548)
-* '--msk_cnd_sng MASK_COND': Mask condition. (line 10602)
+ (line 10593)
+* '--msk_cnd_sng MASK_COND': Mask condition. (line 10647)
* '--msk_nm MASK_VAR': ncwa netCDF Weighted Averager.
- (line 10548)
-* '--msk_val MASK_VAL': Mask condition. (line 10616)
+ (line 10593)
+* '--msk_val MASK_VAL': Mask condition. (line 10661)
* '--msk_var MASK_VAR': ncwa netCDF Weighted Averager.
- (line 10548)
+ (line 10593)
* '--Mtd': ncks netCDF Kitchen Sink.
- (line 9416)
+ (line 9450)
* '--mtd': ncks netCDF Kitchen Sink.
- (line 9459)
+ (line 9493)
* '--multiple_record_dimensions': Multiple Record Dimensions.
- (line 3876)
+ (line 3901)
* '--ncml': ncks netCDF Kitchen Sink.
- (line 9508)
+ (line 9553)
* '--netcdf4': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '--nintap LOOP': Specifying Input Files.
- (line 1641)
+ (line 1662)
* '--no-blank': ncks netCDF Kitchen Sink.
- (line 9472)
+ (line 9506)
* '--no-coords': Subsetting Coordinate Variables.
- (line 2593)
-* '--no-coords' <1>: CF Conventions. (line 5372)
+ (line 2614)
+* '--no-coords' <1>: CF Conventions. (line 5397)
* '--no-crd': Subsetting Coordinate Variables.
- (line 2593)
-* '--no-crd' <1>: CF Conventions. (line 5372)
+ (line 2614)
+* '--no-crd' <1>: CF Conventions. (line 5397)
* '--noblank': ncks netCDF Kitchen Sink.
- (line 9472)
+ (line 9506)
* '--no_blank': ncks netCDF Kitchen Sink.
- (line 9472)
-* '--no_cell_methods': CF Conventions. (line 5383)
-* '--no_cll_mth': CF Conventions. (line 5383)
+ (line 9506)
+* '--no_cell_methods': CF Conventions. (line 5408)
+* '--no_cll_mth': CF Conventions. (line 5408)
* '--no_rec_dmn DIM': ncks netCDF Kitchen Sink.
- (line 9286)
+ (line 9320)
* '--no_tmp_fl': Temporary Output Files.
- (line 928)
-* '--no_tmp_fl' <1>: RAM disks. (line 4441)
+ (line 949)
+* '--no_tmp_fl' <1>: RAM disks. (line 4466)
* '--nsm_fl': nces netCDF Ensemble Statistics.
- (line 8736)
+ (line 8759)
* '--nsm_grp': nces netCDF Ensemble Statistics.
- (line 8736)
+ (line 8759)
* '--nsm_sfx': nces netCDF Ensemble Statistics.
- (line 8736)
-* '--nsx': Subsetting Files. (line 2441)
-* '--omp_num_threads THR_NBR': OpenMP Threading. (line 1504)
+ (line 8759)
+* '--nsx': Subsetting Files. (line 2462)
+* '--omp_num_threads THR_NBR': OpenMP Threading. (line 1525)
* '--open_ram': Temporary Output Files.
- (line 928)
+ (line 949)
* '--open_ram' <1>: Memory Requirements.
- (line 1313)
-* '--open_ram' <2>: RAM disks. (line 4361)
-* '--operation OP_TYP': Operation Types. (line 4585)
+ (line 1334)
+* '--open_ram' <2>: RAM disks. (line 4386)
+* '--operation OP_TYP': Operation Types. (line 4610)
* '--operation OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 8445)
-* '--op_rlt MASK_COMP': Mask condition. (line 10602)
-* '--op_typ OP_TYP': Operation Types. (line 4585)
+ (line 8468)
+* '--op_rlt MASK_COMP': Mask condition. (line 10647)
+* '--op_typ OP_TYP': Operation Types. (line 4610)
* '--op_typ OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
+* '--orphan_dimensions': ncks netCDF Kitchen Sink.
+ (line 9534)
* '--output FL_OUT': Specifying Output Files.
- (line 1744)
+ (line 1765)
* '--overwrite': Temporary Output Files.
- (line 970)
-* '--overwrite' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '--overwrite' <1>: Batch Mode. (line 5252)
* '--ovr': Temporary Output Files.
- (line 970)
-* '--ovr' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '--ovr' <1>: Batch Mode. (line 5252)
* '--pack_policy PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 9841)
+ (line 9886)
* '--path INPUT-PATH': Specifying Input Files.
- (line 1641)
-* '--path INPUT-PATH' <1>: Remote storage. (line 1776)
+ (line 1662)
+* '--path INPUT-PATH' <1>: Remote storage. (line 1797)
* '--pck_map PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 9908)
+ (line 9953)
* '--pck_plc PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 9841)
+ (line 9886)
* '--print': ncks netCDF Kitchen Sink.
- (line 9480)
+ (line 9514)
* '--prn': ncks netCDF Kitchen Sink.
- (line 9480)
+ (line 9514)
* '--prn_fnc_tbl': Intrinsic mathematical methods.
- (line 8010)
+ (line 8033)
* '--pseudonym': Symbolic Links. (line 534)
* '--pth INPUT-PATH': Specifying Input Files.
- (line 1641)
-* '--pth INPUT-PATH' <1>: Remote storage. (line 1776)
+ (line 1662)
+* '--pth INPUT-PATH' <1>: Remote storage. (line 1797)
* '--quiet': ncks netCDF Kitchen Sink.
- (line 9492)
+ (line 9526)
+* '--rad': ncks netCDF Kitchen Sink.
+ (line 9534)
* '--ram_all': Memory Requirements.
- (line 1313)
-* '--ram_all' <1>: RAM disks. (line 4361)
+ (line 1334)
+* '--ram_all' <1>: RAM disks. (line 4386)
* '--rcd_nm ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 8883)
-* '--record_append': Record Appending. (line 3238)
-* '--rec_apn': Record Appending. (line 3238)
+ (line 8906)
+* '--record_append': Record Appending. (line 3263)
+* '--rec_apn': Record Appending. (line 3263)
* '--retain': Retaining Retrieved Files.
- (line 2028)
+ (line 2049)
+* '--retain_all_dimensions': ncks netCDF Kitchen Sink.
+ (line 9534)
* '--revision': Help Requests and Bug Reports.
- (line 843)
-* '--revision' <1>: Operator Version. (line 5457)
+ (line 864)
+* '--revision' <1>: Operator Version. (line 5482)
+* '--rph_dmn': ncks netCDF Kitchen Sink.
+ (line 9534)
* '--rth_dbl': Promoting Single-precision to Double.
- (line 4874)
+ (line 4899)
* '--rth_flt': Promoting Single-precision to Double.
- (line 4874)
+ (line 4899)
* '--rtn': Retaining Retrieved Files.
- (line 2028)
+ (line 2049)
* '--script': ncap2 netCDF Arithmetic Processor.
- (line 5507)
+ (line 5532)
* '--script-file': ncap2 netCDF Arithmetic Processor.
- (line 5507)
+ (line 5532)
* '--sng_fmt': ncks netCDF Kitchen Sink.
- (line 9500)
+ (line 9545)
* '--spt': ncap2 netCDF Arithmetic Processor.
- (line 5507)
+ (line 5532)
* '--string': ncks netCDF Kitchen Sink.
- (line 9500)
-* '--threads THR_NBR': OpenMP Threading. (line 1504)
-* '--thr_nbr THR_NBR': OpenMP Threading. (line 1504)
+ (line 9545)
+* '--threads THR_NBR': OpenMP Threading. (line 1525)
+* '--thr_nbr THR_NBR': OpenMP Threading. (line 1525)
* '--ulm_nm ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 8883)
-* '--union': Subsetting Files. (line 2350)
-* '--union' <1>: Subsetting Files. (line 2441)
+ (line 8906)
+* '--union': Subsetting Files. (line 2371)
+* '--union' <1>: Subsetting Files. (line 2462)
* '--units': ncks netCDF Kitchen Sink.
- (line 9504)
-* '--unn': Subsetting Files. (line 2350)
-* '--unn' <1>: Subsetting Files. (line 2441)
+ (line 9549)
+* '--unn': Subsetting Files. (line 2371)
+* '--unn' <1>: Subsetting Files. (line 2462)
* '--unpack': ncpdq netCDF Permute Dimensions Quickly.
- (line 9892)
+ (line 9937)
* '--upk': ncpdq netCDF Permute Dimensions Quickly.
- (line 9892)
-* '--variable VAR': Subsetting Files. (line 2350)
+ (line 9937)
+* '--variable VAR': Subsetting Files. (line 2371)
* '--variable VAR' <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* '--version': Help Requests and Bug Reports.
- (line 843)
-* '--version' <1>: Operator Version. (line 5457)
+ (line 864)
+* '--version' <1>: Operator Version. (line 5482)
* '--vrs': Help Requests and Bug Reports.
- (line 843)
-* '--vrs' <1>: Operator Version. (line 5457)
+ (line 864)
+* '--vrs' <1>: Operator Version. (line 5482)
* '--weight WEIGHT': ncwa netCDF Weighted Averager.
- (line 10548)
+ (line 10593)
* '--weight WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9033)
+ (line 9056)
* '--wgt_var WEIGHT': ncwa netCDF Weighted Averager.
- (line 10548)
+ (line 10593)
* '--wgt_var WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9033)
+ (line 9056)
* '--write_tmp_fl': Temporary Output Files.
- (line 928)
+ (line 949)
* '--wrt_tmp_fl': Temporary Output Files.
- (line 928)
-* '--xcl': Subsetting Files. (line 2350)
+ (line 949)
+* '--xcl': Subsetting Files. (line 2371)
* '--xcl' <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* '--xml': ncks netCDF Kitchen Sink.
- (line 9508)
+ (line 9553)
* '--xml_no_location': ncks netCDF Kitchen Sink.
- (line 9538)
+ (line 9583)
* '--xml_spr_chr': ncks netCDF Kitchen Sink.
- (line 9538)
+ (line 9583)
* '--xml_spr_nmr': ncks netCDF Kitchen Sink.
- (line 9538)
+ (line 9583)
* '-3': netCDF2/3/4 and HDF4/5 Support.
(line 667)
* '-3' <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '-4': netCDF2/3/4 and HDF4/5 Support.
(line 667)
* '-4' <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '-5': ncks netCDF Kitchen Sink.
- (line 9264)
+ (line 9287)
* '-6': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '-7': File Formats and Conversion.
- (line 2068)
+ (line 2089)
* '-A': Temporary Output Files.
- (line 970)
-* '-A' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '-A' <1>: Batch Mode. (line 5252)
* '-a': ncks netCDF Kitchen Sink.
- (line 9271)
+ (line 9294)
* '-a' <1>: Filters for 'ncks'.
- (line 9687)
+ (line 9732)
* '-A' <2>: Filters for 'ncks'.
- (line 9699)
+ (line 9744)
* '-A' <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10024)
-* '-b': Examples ncap2. (line 7881)
+ (line 10069)
+* '-b': Examples ncap2. (line 7904)
* '-b' <1>: ncbo netCDF Binary Operator.
- (line 8543)
+ (line 8566)
* '-b' <2>: ncks netCDF Kitchen Sink.
- (line 9281)
+ (line 9304)
* '-B MASK_COND': ncwa netCDF Weighted Averager.
- (line 10548)
-* '-B MASK_COND' <1>: Mask condition. (line 10602)
+ (line 10593)
+* '-B MASK_COND' <1>: Mask condition. (line 10647)
* '-C': Subsetting Coordinate Variables.
- (line 2593)
+ (line 2614)
* '-c': Subsetting Coordinate Variables.
- (line 2593)
-* '-C' <1>: CF Conventions. (line 5372)
-* '-c' <1>: CF Conventions. (line 5372)
-* '-C' <2>: Examples ncap2. (line 7893)
+ (line 2614)
+* '-C' <1>: CF Conventions. (line 5397)
+* '-c' <1>: CF Conventions. (line 5397)
+* '-C' <2>: Examples ncap2. (line 7916)
* '-D': Help Requests and Bug Reports.
- (line 828)
+ (line 849)
* '-D DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 843)
-* '-D DEBUG-LEVEL' <1>: Large Datasets. (line 1302)
+ (line 864)
+* '-D DEBUG-LEVEL' <1>: Large Datasets. (line 1323)
* '-D DEBUG-LEVEL' <2>: Command Line Options.
- (line 1585)
-* '-d DIM,[MIN],[MAX],STRIDE': Stride. (line 3177)
-* '-d DIM,[MIN],[MAX],[STRIDE],[SUBCYCLE]': Subcycle. (line 3289)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3073)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3365)
+ (line 1606)
+* '-d DIM,[MIN],[MAX],STRIDE': Stride. (line 3202)
+* '-d DIM,[MIN],[MAX],[STRIDE],[SUBCYCLE]': Subcycle. (line 3314)
+* '-d DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3098)
+* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3390)
* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3509)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support. (line 3669)
+ (line 3534)
+* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support. (line 3694)
* '-d DIM,[MIN][,[MAX]]': ncwa netCDF Weighted Averager.
- (line 10540)
+ (line 10585)
* '-F': C and Fortran Index Conventions.
- (line 3036)
+ (line 3061)
* '-f': Intrinsic mathematical methods.
- (line 8010)
+ (line 8033)
* '-G GPE_DSC': Group Path Editing.
- (line 2618)
-* '-g GRP': Subsetting Files. (line 2350)
-* '-h': History Attribute. (line 5247)
+ (line 2639)
+* '-g GRP': Subsetting Files. (line 2371)
+* '-h': History Attribute. (line 5272)
* '-H': File List Attributes.
- (line 5275)
+ (line 5300)
* '-h' <1>: ncatted netCDF Attribute Editor.
- (line 8157)
+ (line 8180)
* '-H' <1>: ncks netCDF Kitchen Sink.
- (line 9371)
+ (line 9405)
* '-I': ncwa netCDF Weighted Averager.
- (line 10576)
-* '-L': Deflation. (line 4223)
-* '-l OUTPUT-PATH': Remote storage. (line 1776)
-* '-l OUTPUT-PATH' <1>: Remote storage. (line 1837)
+ (line 10621)
+* '-L': Deflation. (line 4248)
+* '-l OUTPUT-PATH': Remote storage. (line 1797)
+* '-l OUTPUT-PATH' <1>: Remote storage. (line 1858)
* '-M': Determining File Format.
- (line 2154)
+ (line 2175)
* '-M' <1>: ncecat netCDF Ensemble Concatenator.
- (line 8934)
+ (line 8957)
* '-M' <2>: ncks netCDF Kitchen Sink.
- (line 9416)
+ (line 9450)
* '-m': ncks netCDF Kitchen Sink.
- (line 9459)
-* '-M CNK_MAP': Chunking. (line 4104)
+ (line 9493)
+* '-M CNK_MAP': Chunking. (line 4129)
* '-m MASK_VAR': ncwa netCDF Weighted Averager.
- (line 10548)
+ (line 10593)
* '-M PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 9908)
+ (line 9953)
* '-N': Normalization and Integration.
- (line 10631)
+ (line 10676)
* '-n LOOP': Large Numbers of Files.
- (line 1172)
+ (line 1193)
* '-n LOOP' <1>: Large Numbers of Files.
- (line 1242)
+ (line 1263)
* '-n LOOP' <2>: Specifying Input Files.
- (line 1641)
+ (line 1662)
* '-O': Temporary Output Files.
- (line 970)
-* '-O' <1>: Batch Mode. (line 5227)
+ (line 991)
+* '-O' <1>: Batch Mode. (line 5252)
* '-o FL_OUT': Large Numbers of Files.
- (line 1226)
+ (line 1247)
* '-o FL_OUT' <1>: Specifying Output Files.
- (line 1744)
+ (line 1765)
* '-P': ncks netCDF Kitchen Sink.
- (line 9480)
+ (line 9514)
* '-p INPUT-PATH': Specifying Input Files.
- (line 1641)
-* '-p INPUT-PATH' <1>: Remote storage. (line 1837)
+ (line 1662)
+* '-p INPUT-PATH' <1>: Remote storage. (line 1858)
* '-P PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 9841)
+ (line 9886)
* '-Q': ncks netCDF Kitchen Sink.
- (line 9486)
+ (line 9520)
* '-q': ncks netCDF Kitchen Sink.
- (line 9492)
+ (line 9526)
* '-r': Help Requests and Bug Reports.
- (line 828)
+ (line 849)
* '-r' <1>: Help Requests and Bug Reports.
- (line 843)
+ (line 864)
* '-R': Retaining Retrieved Files.
- (line 2028)
-* '-r' <2>: Operator Version. (line 5457)
+ (line 2049)
+* '-r' <2>: Operator Version. (line 5482)
* '-s': ncks netCDF Kitchen Sink.
- (line 9500)
+ (line 9545)
* '-t THR_NBR': Single and Multi-file Operators.
- (line 1396)
-* '-t THR_NBR' <1>: OpenMP Threading. (line 1504)
+ (line 1417)
+* '-t THR_NBR' <1>: OpenMP Threading. (line 1525)
* '-u': ncks netCDF Kitchen Sink.
- (line 9504)
+ (line 9549)
* '-U': ncpdq netCDF Permute Dimensions Quickly.
- (line 9892)
+ (line 9937)
* '-u ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 8883)
+ (line 8906)
* '-v': ncpdq netCDF Permute Dimensions Quickly.
- (line 10024)
-* '-v VAR': Subsetting Files. (line 2350)
+ (line 10069)
+* '-v VAR': Subsetting Files. (line 2371)
* '-v VAR' <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* '-w WEIGHT': ncwa netCDF Weighted Averager.
- (line 10548)
+ (line 10593)
* '-w WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9033)
-* '-x': Subsetting Files. (line 2350)
+ (line 9056)
+* '-x': Subsetting Files. (line 2371)
* '-X': Auxiliary Coordinates.
- (line 3559)
+ (line 3584)
* '-x' <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* '-X LON_MIN,LON_MAX,LAT_MIN,LAT_MAX': Auxiliary Coordinates.
- (line 3559)
-* '-y OP_TYP': Operation Types. (line 4585)
+ (line 3584)
+* '-y OP_TYP': Operation Types. (line 4610)
* '-y OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* '.': ncrename netCDF Renamer.
- (line 10345)
-* '.' (wildcard character): Subsetting Files. (line 2516)
+ (line 10390)
+* '.' (wildcard character): Subsetting Files. (line 2537)
* '.bashrc': Filters for 'ncks'.
- (line 9592)
-* '.netrc': Remote storage. (line 1776)
-* '.rhosts': Remote storage. (line 1776)
+ (line 9637)
+* '.netrc': Remote storage. (line 1797)
+* '.rhosts': Remote storage. (line 1797)
* '/': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* '/' (division): Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* '/*...*/' (comment): Syntax of ncap2 statements.
- (line 5566)
+ (line 5591)
* '//' (comment): Syntax of ncap2 statements.
- (line 5566)
+ (line 5591)
* '0' (NUL): ncatted netCDF Attribute Editor.
- (line 8330)
+ (line 8353)
* 32-bit offset file format: Determining File Format.
- (line 2154)
+ (line 2175)
* 64-bit offset file format: Determining File Format.
- (line 2154)
+ (line 2175)
* '64BIT' files: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* ':' (separator character): Group Path Editing.
- (line 2656)
+ (line 2677)
* ';' (end of statement): Syntax of ncap2 statements.
- (line 5564)
+ (line 5589)
* '<arpa/nameser.h>': Windows Operating System.
(line 502)
* '<resolv.h>': Windows Operating System.
(line 502)
-* '?' (filename expansion): Subsetting Files. (line 2516)
+* '?' (filename expansion): Subsetting Files. (line 2537)
* '?' (question mark): ncatted netCDF Attribute Editor.
- (line 8321)
-* '?' (wildcard character): Subsetting Files. (line 2523)
+ (line 8344)
+* '?' (wildcard character): Subsetting Files. (line 2544)
* '@' (attribute): Syntax of ncap2 statements.
- (line 5574)
+ (line 5599)
* '@' (separator character): Group Path Editing.
- (line 2656)
+ (line 2677)
* '[]' (array delimiters): Syntax of ncap2 statements.
- (line 5558)
+ (line 5583)
* '\' (backslash): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '\"' (protected double quote): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '\'' (protected end quote): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '\?' (protected question mark): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '\a' (ASCII BEL, bell): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\b' (ASCII BS, backspace): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\f' (ASCII FF, formfeed): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\n' (ASCII LF, linefeed): ncatted netCDF Attribute Editor.
- (line 8306)
+ (line 8329)
* '\n' (linefeed): Filters for 'ncks'.
- (line 9720)
+ (line 9765)
* '\r' (ASCII CR, carriage return): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\t' (ASCII HT, horizontal tab): ncatted netCDF Attribute Editor.
- (line 8306)
+ (line 8329)
* '\t' (horizontal tab): Filters for 'ncks'.
- (line 9720)
+ (line 9765)
* '\v' (ASCII VT, vertical tab): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\\' (ASCII \, backslash): ncatted netCDF Attribute Editor.
- (line 8316)
+ (line 8339)
* '\\' (protected backslash): ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* '^' (power): Intrinsic mathematical methods.
- (line 7903)
-* '^' (wildcard character): Subsetting Files. (line 2516)
+ (line 7926)
+* '^' (wildcard character): Subsetting Files. (line 2537)
* '_ChunkSizes': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_DeflateLevel': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_Endianness': ncks netCDF Kitchen Sink.
- (line 9311)
-* '_FillValue': Missing Values. (line 3914)
-* '_FillValue' <1>: Packed data. (line 4448)
+ (line 9345)
+* '_FillValue': Missing Values. (line 3939)
+* '_FillValue' <1>: Packed data. (line 4473)
* '_FillValue' <2>: ncatted netCDF Attribute Editor.
- (line 8162)
+ (line 8185)
* '_FillValue' <3>: ncflint netCDF File Interpolator.
- (line 9082)
+ (line 9105)
* _FILLVALUE: ncpdq netCDF Permute Dimensions Quickly.
- (line 9952)
+ (line 9997)
* '_FillValue' <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9952)
+ (line 9997)
* '_FillValue' <5>: ncrename netCDF Renamer.
- (line 10471)
+ (line 10516)
* '_Fletcher32': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_Format': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_NOFILL': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_Shuffle': ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* '_Storage': ncks netCDF Kitchen Sink.
- (line 9311)
-* '|' (wildcard character): Subsetting Files. (line 2523)
+ (line 9345)
+* '|' (wildcard character): Subsetting Files. (line 2544)
* ABS: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* absolute value: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ACOS: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ACOSH: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* 'add': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* adding data: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* adding data <1>: ncflint netCDF File Interpolator.
- (line 9009)
+ (line 9032)
* addition: Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* addition <1>: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* addition <2>: ncflint netCDF File Interpolator.
- (line 9009)
-* ADD_OFFSET: Performance. (line 1449)
-* 'add_offset': Packed data. (line 4448)
+ (line 9032)
+* ADD_OFFSET: Performance. (line 1470)
+* 'add_offset': Packed data. (line 4473)
* 'add_offset' <1>: ncecat netCDF Ensemble Concatenator.
- (line 8956)
+ (line 8979)
* 'add_offset' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9834)
+ (line 9879)
* 'add_offset' <3>: ncrcat netCDF Record Concatenator.
- (line 10282)
-* aggregation: Combine Files. (line 11113)
-* Aleksandar Jelenak: Contributors. (line 10840)
-* Alexander Hansen: Contributors. (line 10848)
+ (line 10327)
+* aggregation: Combine Files. (line 11158)
+* Aleksandar Jelenak: Contributors. (line 10885)
+* Alexander Hansen: Contributors. (line 10893)
* 'alias': ncbo netCDF Binary Operator.
- (line 8489)
+ (line 8512)
* alias: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'alias' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9902)
-* 'all': Chunking. (line 4060)
+ (line 9947)
+* 'all': Chunking. (line 4085)
* alphabetization: ncks netCDF Kitchen Sink.
- (line 9271)
+ (line 9294)
* alphabetize output: Filters for 'ncks'.
- (line 9687)
+ (line 9732)
* alternate invocations: ncbo netCDF Binary Operator.
- (line 8445)
-* anchor: Subsetting Files. (line 2392)
-* anchoring: Subsetting Files. (line 2392)
-* Andrea Cimatoribus: Contributors. (line 10854)
-* Andrew Wittenberg: Contributors. (line 10838)
+ (line 8468)
+* anchor: Subsetting Files. (line 2413)
+* anchoring: Subsetting Files. (line 2413)
+* Andrea Cimatoribus: Contributors. (line 10899)
+* Andrew Wittenberg: Contributors. (line 10883)
* annual average: Annual Average over Regions.
- (line 11342)
+ (line 11387)
* annual average from daily data: Daily data in one file.
- (line 10910)
+ (line 10955)
* annual average from monthly data: Monthly data in one file.
- (line 10933)
+ (line 10978)
* anomalies: ncbo netCDF Binary Operator.
- (line 8527)
+ (line 8550)
* anomalies <1>: Annual Average over Regions.
- (line 11342)
-* anomalies <2>: Monthly Cycle. (line 11633)
+ (line 11387)
+* anomalies <2>: Monthly Cycle. (line 11678)
* ANSI: Compatability. (line 415)
* 'ANSI C': Intrinsic mathematical methods.
- (line 8009)
-* appending data: Examples ncap2. (line 7881)
+ (line 8032)
+* appending data: Examples ncap2. (line 7904)
* appending data <1>: ncks netCDF Kitchen Sink.
- (line 9211)
+ (line 9234)
* appending to files: Temporary Output Files.
- (line 970)
-* appending to files <1>: Batch Mode. (line 5227)
+ (line 991)
+* appending to files <1>: Batch Mode. (line 5252)
* appending to files <2>: Filters for 'ncks'.
- (line 9699)
+ (line 9744)
* appending variables: Temporary Output Files.
- (line 970)
+ (line 991)
* appending variables <1>: Appending Variables.
- (line 995)
+ (line 1016)
* appending variables <2>: ncap2 netCDF Arithmetic Processor.
- (line 5522)
+ (line 5547)
* appending variables <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10024)
+ (line 10069)
* AR4: nces netCDF Ensemble Statistics.
- (line 8733)
+ (line 8756)
* arccosine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* arcsine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* arctangent function: Intrinsic mathematical methods.
- (line 7906)
-* 'area': CF Conventions. (line 5306)
+ (line 7929)
+* 'area': CF Conventions. (line 5331)
* area-averaging: Annual Average over Regions.
- (line 11342)
-* arithmetic operators: Missing Values. (line 3920)
-* arithmetic operators <1>: Missing Values. (line 3973)
+ (line 11387)
+* arithmetic operators: Missing Values. (line 3945)
+* arithmetic operators <1>: Missing Values. (line 3998)
* arithmetic operators <2>: ncwa netCDF Weighted Averager.
- (line 10540)
+ (line 10585)
* arithmetic processor: ncap2 netCDF Arithmetic Processor.
- (line 5489)
-* ARM conventions: ARM Conventions. (line 5426)
+ (line 5514)
+* ARM conventions: ARM Conventions. (line 5451)
* ARM conventions <1>: ncrcat netCDF Record Concatenator.
- (line 10295)
+ (line 10340)
* array: Arrays and hyperslabs.
- (line 5852)
+ (line 5877)
* 'array' function: Arrays and hyperslabs.
- (line 5852)
+ (line 5877)
* array indexing: Syntax of ncap2 statements.
- (line 5560)
+ (line 5585)
* array storage: Syntax of ncap2 statements.
- (line 5562)
+ (line 5587)
* array syntax: Syntax of ncap2 statements.
- (line 5558)
+ (line 5583)
* arrays: Arrays and hyperslabs.
- (line 5852)
+ (line 5877)
* arrival value: ncflint netCDF File Interpolator.
- (line 9049)
+ (line 9072)
* ASCII: ncatted netCDF Attribute Editor.
- (line 8304)
+ (line 8327)
* ASCII <1>: ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* ASIN: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ASINH: Intrinsic mathematical methods.
- (line 7906)
-* 'asort': Sort methods. (line 6577)
+ (line 7929)
+* 'asort': Sort methods. (line 6600)
* assignment statement: Syntax of ncap2 statements.
- (line 5564)
-* asynchronous file access: Remote storage. (line 1776)
+ (line 5589)
+* asynchronous file access: Remote storage. (line 1797)
* ATAN: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ATANH: Intrinsic mathematical methods.
- (line 7906)
-* attribute inheritance: Attributes. (line 6027)
+ (line 7929)
+* attribute inheritance: Attributes. (line 6052)
* attribute names: ncatted netCDF Attribute Editor.
- (line 8139)
+ (line 8162)
* attribute names <1>: ncrename netCDF Renamer.
- (line 10336)
-* attribute propagation: Attributes. (line 6027)
+ (line 10381)
+* attribute propagation: Attributes. (line 6052)
* attribute syntax: Syntax of ncap2 statements.
- (line 5574)
-* attribute, 'units': UDUnits Support. (line 3669)
+ (line 5599)
+* attribute, 'units': UDUnits Support. (line 3694)
* attributes: ncatted netCDF Attribute Editor.
- (line 8139)
+ (line 8162)
* attributes, appending: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, creating: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, deleting: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, editing: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, editing <1>: Annual Average over Regions.
- (line 11342)
-* attributes, editing <2>: Regrid MODIS Data. (line 11797)
+ (line 11387)
+* attributes, editing <2>: Regrid MODIS Data. (line 11842)
* attributes, global: Large Numbers of Files.
- (line 1200)
-* attributes, global <1>: History Attribute. (line 5247)
+ (line 1221)
+* attributes, global <1>: History Attribute. (line 5272)
* attributes, global <2>: File List Attributes.
- (line 5275)
-* attributes, global <3>: ARM Conventions. (line 5450)
+ (line 5300)
+* attributes, global <3>: ARM Conventions. (line 5475)
* attributes, global <4>: ncatted netCDF Attribute Editor.
- (line 8204)
+ (line 8227)
* attributes, global <5>: ncatted netCDF Attribute Editor.
- (line 8371)
+ (line 8394)
* attributes, global <6>: ncks netCDF Kitchen Sink.
- (line 9197)
+ (line 9220)
* attributes, global <7>: ncks netCDF Kitchen Sink.
- (line 9231)
+ (line 9254)
* attributes, global <8>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* attributes, global <9>: ncrename netCDF Renamer.
- (line 10391)
+ (line 10436)
* attributes, global <10>: ncrename netCDF Renamer.
- (line 10471)
+ (line 10516)
* attributes, modifying: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, modifying <1>: Annual Average over Regions.
- (line 11342)
-* attributes, modifying <2>: Regrid MODIS Data. (line 11797)
+ (line 11387)
+* attributes, modifying <2>: Regrid MODIS Data. (line 11842)
* attributes, overwriting: ncatted netCDF Attribute Editor.
- (line 8221)
+ (line 8244)
* attributes, overwriting <1>: Annual Average over Regions.
- (line 11342)
-* attributes, overwriting <2>: Regrid MODIS Data. (line 11797)
-* attributes'ncap2': Attributes. (line 5994)
+ (line 11387)
+* attributes, overwriting <2>: Regrid MODIS Data. (line 11842)
+* attributes'ncap2': Attributes. (line 6019)
* 'autoconf': Help Requests and Bug Reports.
- (line 851)
-* autoconversion: Autoconversion. (line 2254)
+ (line 872)
+* autoconversion: Autoconversion. (line 2275)
* automagic: Compatability. (line 455)
* automagic <1>: Large Numbers of Files.
- (line 1173)
-* automatic type conversion: Type Conversion. (line 4738)
+ (line 1194)
+* automatic type conversion: Type Conversion. (line 4763)
* automatic type conversion <1>: Intrinsic mathematical methods.
- (line 7976)
-* auxiliary coordinates: CF Conventions. (line 5372)
-* average: Operation Types. (line 4585)
+ (line 7999)
+* auxiliary coordinates: CF Conventions. (line 5397)
+* average: Operation Types. (line 4610)
* average <1>: ncwa netCDF Weighted Averager.
- (line 10584)
+ (line 10629)
* average <2>: Daily data in one file.
- (line 10896)
+ (line 10941)
* average <3>: Daily data in one file.
- (line 10910)
+ (line 10955)
* average <4>: Monthly data in one file.
- (line 10930)
+ (line 10975)
* average <5>: Monthly data in one file.
- (line 10933)
+ (line 10978)
* average <6>: One time point one file.
- (line 10959)
+ (line 11004)
* average <7>: Global Distribution of Long-term Average.
- (line 11239)
+ (line 11284)
* average <8>: Annual Average over Regions.
- (line 11342)
-* average <9>: Monthly Cycle. (line 11633)
-* averaging data: Missing Values. (line 3914)
+ (line 11387)
+* average <9>: Monthly Cycle. (line 11678)
+* averaging data: Missing Values. (line 3939)
* averaging data <1>: nces netCDF Ensemble Statistics.
- (line 8694)
+ (line 8717)
* averaging data <2>: ncra netCDF Record Averager.
- (line 10183)
+ (line 10228)
* averaging data <3>: ncwa netCDF Weighted Averager.
- (line 10508)
-* 'avg': Operation Types. (line 4585)
+ (line 10553)
+* 'avg': Operation Types. (line 4610)
* avg(): Methods and functions.
- (line 6297)
-* 'avgsqr': Operation Types. (line 4585)
-* Barry deFreese: Contributors. (line 10840)
-* 'base_time': ARM Conventions. (line 5426)
-* 'bash': Subsetting Files. (line 2568)
+ (line 6320)
+* 'avgsqr': Operation Types. (line 4610)
+* Barry deFreese: Contributors. (line 10885)
+* 'base_time': ARM Conventions. (line 5451)
+* 'bash': Subsetting Files. (line 2589)
* 'bash' <1>: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* Bash shell: ncbo netCDF Binary Operator.
- (line 8474)
+ (line 8497)
* Bash Shell: ncbo netCDF Binary Operator.
- (line 8642)
+ (line 8665)
* Bash shell <1>: Filters for 'ncks'.
- (line 9592)
-* batch mode: Batch Mode. (line 5227)
+ (line 9637)
+* batch mode: Batch Mode. (line 5252)
* beer: Promoting Single-precision to Double.
- (line 5125)
-* benchmarks: OpenMP Threading. (line 1563)
+ (line 5150)
+* benchmarks: OpenMP Threading. (line 1584)
* Bessel function: GSL special functions.
- (line 7064)
-* bilinear interpolation: Regrid MODIS Data. (line 11797)
-* Bill Kocik: Contributors. (line 10824)
+ (line 7087)
+* bilinear interpolation: Regrid MODIS Data. (line 11842)
+* Bill Kocik: Contributors. (line 10869)
* binary format: ncks netCDF Kitchen Sink.
- (line 9281)
-* binary operations: Memory for ncap2. (line 1402)
+ (line 9304)
+* binary operations: Memory for ncap2. (line 1423)
* binary operations <1>: ncbo netCDF Binary Operator.
- (line 8427)
-* binary Operators: Expressions. (line 5661)
+ (line 8450)
+* binary Operators: Expressions. (line 5686)
* blank: ncks netCDF Kitchen Sink.
- (line 9472)
-* 'bounds': CF Conventions. (line 5361)
-* bounds convention: CF Conventions. (line 5361)
-* Bourne Shell: Stride. (line 3215)
+ (line 9506)
+* 'bounds': CF Conventions. (line 5386)
+* bounds convention: CF Conventions. (line 5386)
+* Bourne Shell: Stride. (line 3240)
* Bourne Shell <1>: ncbo netCDF Binary Operator.
- (line 8642)
-* Brian Mays: Contributors. (line 10820)
+ (line 8665)
+* Brian Mays: Contributors. (line 10865)
* broadcasting: ncbo netCDF Binary Operator.
- (line 8579)
+ (line 8602)
* broadcasting groups: netCDF2/3/4 and HDF4/5 Support.
(line 661)
* broadcasting groups <1>: ncbo netCDF Binary Operator.
- (line 8558)
+ (line 8581)
* broadcasting groups <2>: ncbo netCDF Binary Operator.
- (line 8607)
-* broadcasting variables: Expressions. (line 5610)
+ (line 8630)
+* broadcasting variables: Expressions. (line 5635)
* broadcasting variables <1>: ncbo netCDF Binary Operator.
- (line 8516)
+ (line 8539)
* broadcasting variables <2>: ncbo netCDF Binary Operator.
- (line 8518)
+ (line 8541)
* broadcasting variables <3>: ncflint netCDF File Interpolator.
- (line 9147)
+ (line 9170)
* broadcasting variables <4>: ncwa netCDF Weighted Averager.
- (line 10508)
+ (line 10553)
* 'BSD': Command Line Options.
- (line 1582)
-* Buffer sizes: Buffer sizes. (line 4330)
-* buffering: Performance. (line 1440)
+ (line 1603)
+* Buffer sizes: Buffer sizes. (line 4355)
+* buffering: Performance. (line 1461)
* bugs, reporting: Help Requests and Bug Reports.
- (line 788)
+ (line 809)
* byte(): Methods and functions.
- (line 6389)
+ (line 6412)
* C index convention: C and Fortran Index Conventions.
- (line 3036)
+ (line 3061)
* C language: Compatability. (line 437)
-* C language <1>: Missing Values. (line 3962)
+* C language <1>: Missing Values. (line 3987)
* C language <2>: Automatic type conversion.
- (line 4867)
+ (line 4892)
* C language <3>: Promoting Single-precision to Double.
- (line 4886)
+ (line 4911)
* C language <4>: Syntax of ncap2 statements.
- (line 5552)
-* C language <5>: Expressions. (line 5581)
+ (line 5577)
+* C language <5>: Expressions. (line 5606)
* C language <6>: ncatted netCDF Attribute Editor.
- (line 8330)
+ (line 8353)
* C language <7>: ncks netCDF Kitchen Sink.
- (line 9500)
-* C Shell: Stride. (line 3215)
+ (line 9545)
+* C Shell: Stride. (line 3240)
* C Shell <1>: ncbo netCDF Binary Operator.
- (line 8642)
+ (line 8665)
* 'c++': Compatability. (line 402)
* C++: Compatability. (line 407)
* C89: Compatability. (line 415)
@@ -13254,846 +13307,850 @@ General Index
* C99 <2>: Windows Operating System.
(line 490)
* CAM3: Promoting Single-precision to Double.
- (line 5025)
+ (line 5050)
* 'CC': Compatability. (line 402)
* 'cc': Compatability. (line 402)
* CCM Processor: Specifying Input Files.
- (line 1641)
+ (line 1662)
* CCM Processor <1>: ncra netCDF Record Averager.
- (line 10223)
+ (line 10268)
* CCM Processor <2>: ncrcat netCDF Record Concatenator.
- (line 10301)
+ (line 10346)
* CCSM: Proposals for Institutional Funding.
- (line 10866)
-* CCSM <1>: CCSM Example. (line 12036)
-* CCSM conventions: CF Conventions. (line 5306)
+ (line 10911)
+* CCSM <1>: CCSM Example. (line 12081)
+* CCSM conventions: CF Conventions. (line 5331)
* CDL: ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* CEIL: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ceiling function: Intrinsic mathematical methods.
- (line 7906)
-* cell methods convention: CF Conventions. (line 5383)
+ (line 7929)
+* cell methods convention: CF Conventions. (line 5408)
* cell-based grids: Auxiliary Coordinates.
- (line 3576)
-* 'cell_methods': CF Conventions. (line 5383)
+ (line 3601)
+* 'cell_methods': CF Conventions. (line 5408)
* CF compliance checker: Group Path Editing.
- (line 2877)
+ (line 2902)
* CF conventions: Subsetting Coordinate Variables.
- (line 2609)
+ (line 2630)
* CF conventions <1>: Auxiliary Coordinates.
- (line 3559)
-* CF conventions <2>: UDUnits Support. (line 3767)
-* CF conventions <3>: CF Conventions. (line 5306)
+ (line 3584)
+* CF conventions <2>: UDUnits Support. (line 3792)
+* CF conventions <3>: CF Conventions. (line 5331)
* CF conventions <4>: ncbo netCDF Binary Operator.
- (line 8551)
+ (line 8574)
* cfchecker: Group Path Editing.
- (line 2877)
+ (line 2902)
* 'change_miss()': Missing values ncap2.
- (line 6234)
+ (line 6257)
* char(): Methods and functions.
- (line 6391)
+ (line 6414)
* characters, special: ncatted netCDF Attribute Editor.
- (line 8306)
+ (line 8329)
* Charlie Zender: Foreword. (line 203)
-* Charlie Zender <1>: Contributors. (line 10795)
-* chocolate: Contributing. (line 10774)
-* Chris Barker: Chunking. (line 4110)
+* Charlie Zender <1>: Contributors. (line 10840)
+* chocolate: Contributing. (line 10819)
+* Chris Barker: Chunking. (line 4135)
* chunking: netCDF2/3/4 and HDF4/5 Support.
(line 649)
-* chunking <1>: Chunking. (line 4027)
+* chunking <1>: Chunking. (line 4052)
* chunking <2>: ncks netCDF Kitchen Sink.
- (line 9463)
-* chunking map: Chunking. (line 4045)
-* chunking map <1>: Chunking. (line 4104)
-* chunking policy: Chunking. (line 4045)
-* chunksize: Chunking. (line 4045)
+ (line 9497)
+* chunking map: Chunking. (line 4070)
+* chunking map <1>: Chunking. (line 4129)
+* chunking policy: Chunking. (line 4070)
+* chunksize: Chunking. (line 4070)
* 'clang': Compatability. (line 402)
* 'CLASSIC' files: File Formats and Conversion.
- (line 2068)
-* client-server: OPeNDAP. (line 1888)
+ (line 2089)
+* client-server: OPeNDAP. (line 1909)
* Climate and Forecast Metadata Convention: UDUnits Support.
- (line 3767)
-* climate model: Philosophy. (line 870)
+ (line 3792)
+* climate model: Philosophy. (line 891)
* climate model <1>: Climate Model Paradigm.
- (line 896)
-* climate model <2>: Concatenation. (line 1095)
+ (line 917)
+* climate model <2>: Concatenation. (line 1116)
* climate model <3>: Specifying Input Files.
- (line 1704)
+ (line 1725)
* climate model <4>: ncecat netCDF Ensemble Concatenator.
- (line 8945)
+ (line 8968)
* climate model <5>: Normalization and Integration.
- (line 10694)
+ (line 10739)
* climate model <6>: Normalization and Integration.
- (line 10705)
-* clipping operators: Expressions. (line 5733)
+ (line 10750)
+* clipping operators: Expressions. (line 5758)
* CMIP: nces netCDF Ensemble Statistics.
- (line 8733)
+ (line 8756)
* CMIP <1>: ncecat netCDF Ensemble Concatenator.
- (line 8889)
-* CMIP5: CMIP5 Example. (line 10985)
-* 'cnk_all': Chunking. (line 4060)
-* 'cnk_dmn': Chunking. (line 4110)
-* 'cnk_g2d': Chunking. (line 4060)
-* 'cnk_g3d': Chunking. (line 4060)
-* 'cnk_lfp': Chunking. (line 4110)
-* CNK_MAP: Chunking. (line 4104)
-* 'cnk_prd': Chunking. (line 4110)
-* 'cnk_rd1': Chunking. (line 4110)
-* 'cnk_scl': Chunking. (line 4110)
-* 'cnk_xpl': Chunking. (line 4060)
-* 'cnk_xst': Chunking. (line 4060)
-* 'cnk_xst' <1>: Chunking. (line 4110)
+ (line 8912)
+* CMIP5: CMIP5 Example. (line 11030)
+* 'cnk_all': Chunking. (line 4085)
+* 'cnk_dmn': Chunking. (line 4135)
+* 'cnk_g2d': Chunking. (line 4085)
+* 'cnk_g3d': Chunking. (line 4085)
+* 'cnk_lfp': Chunking. (line 4135)
+* CNK_MAP: Chunking. (line 4129)
+* 'cnk_prd': Chunking. (line 4135)
+* 'cnk_rd1': Chunking. (line 4135)
+* 'cnk_scl': Chunking. (line 4135)
+* 'cnk_xpl': Chunking. (line 4085)
+* 'cnk_xst': Chunking. (line 4085)
+* 'cnk_xst' <1>: Chunking. (line 4135)
* Comeau: Compatability. (line 384)
* command line options: Command Line Options.
- (line 1568)
-* command line switches: Philosophy. (line 886)
-* command line switches <1>: Common features. (line 1466)
+ (line 1589)
+* command line switches: Philosophy. (line 907)
+* command line switches <1>: Common features. (line 1487)
* command line switches <2>: Specifying Output Files.
- (line 1744)
+ (line 1765)
* command line switches <3>: Operator Reference Manual.
- (line 5479)
+ (line 5504)
* comments: Syntax of ncap2 statements.
- (line 5566)
+ (line 5591)
* 'como': Compatability. (line 402)
* Compaq: Compatability. (line 384)
-* comparator: Mask condition. (line 10610)
+* comparator: Mask condition. (line 10655)
* compatability: Compatability. (line 384)
* compilers: Specifying Output Files.
- (line 1766)
+ (line 1787)
* complementary error function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* compliance checker: Group Path Editing.
- (line 2877)
-* compression: Deflation. (line 4223)
+ (line 2902)
+* compression: Deflation. (line 4248)
* compression <1>: ncks netCDF Kitchen Sink.
- (line 9463)
+ (line 9497)
* concatenation: Appending Variables.
- (line 995)
+ (line 1016)
* concatenation <1>: ncecat netCDF Ensemble Concatenator.
- (line 8849)
+ (line 8872)
* concatenation <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9982)
+ (line 10027)
* concatenation <3>: ncrcat netCDF Record Concatenator.
- (line 10254)
-* conditional Operator: Expressions. (line 5723)
+ (line 10299)
+* conditional Operator: Expressions. (line 5748)
* 'config.guess': Help Requests and Bug Reports.
- (line 851)
+ (line 872)
* 'configure.eg': Help Requests and Bug Reports.
- (line 851)
-* constraint expressions: OPeNDAP. (line 2014)
+ (line 872)
+* constraint expressions: OPeNDAP. (line 2035)
* contents: How to Use This guide.
(line 350)
-* contributing: Contributing. (line 10763)
-* contributors: Contributors. (line 10794)
-* coordinate limits: Hyperslabs. (line 3073)
-* coordinate variable: UDUnits Support. (line 3703)
-* coordinate variable <1>: Operation Types. (line 4609)
-* coordinate variable <2>: CF Conventions. (line 5372)
+* contributing: Contributing. (line 10808)
+* contributors: Contributors. (line 10839)
+* coordinate limits: Hyperslabs. (line 3098)
+* coordinate variable: UDUnits Support. (line 3728)
+* coordinate variable <1>: Operation Types. (line 4634)
+* coordinate variable <2>: CF Conventions. (line 5397)
* coordinate variable <3>: ncbo netCDF Binary Operator.
- (line 8548)
+ (line 8571)
* coordinate variable <4>: ncwa netCDF Weighted Averager.
- (line 10576)
+ (line 10621)
* coordinate variables: ncrename netCDF Renamer.
- (line 10444)
+ (line 10489)
* 'coordinates': Auxiliary Coordinates.
- (line 3559)
-* 'coordinates' <1>: CF Conventions. (line 5372)
+ (line 3584)
+* 'coordinates' <1>: CF Conventions. (line 5397)
* coordinates: Add Coordinates to MODIS Data.
- (line 11935)
-* coordinates convention: CF Conventions. (line 5372)
+ (line 11980)
+* coordinates convention: CF Conventions. (line 5397)
* coordinates, modifying: Permute MODIS Coordinates.
- (line 11983)
+ (line 12028)
* core dump: Help Requests and Bug Reports.
- (line 788)
-* 'core dump': Large Datasets. (line 1292)
+ (line 809)
+* 'core dump': Large Datasets. (line 1313)
* 'core dump' <1>: Filters for 'ncks'.
- (line 9764)
+ (line 9809)
* COS: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* COSH: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* cosine function: Intrinsic mathematical methods.
- (line 7906)
-* covariance: Examples ncap2. (line 7833)
-* 'cp': Subsetting Files. (line 2392)
+ (line 7929)
+* covariance: Examples ncap2. (line 7856)
+* 'cp': Subsetting Files. (line 2413)
* Cray: Compatability. (line 384)
-* Cray <1>: Large Datasets. (line 1287)
-* 'csh': Subsetting Files. (line 2568)
+* Cray <1>: Large Datasets. (line 1308)
+* 'csh': Subsetting Files. (line 2589)
* Csh shell: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'cxx': Compatability. (line 402)
* Cygwin: Windows Operating System.
(line 498)
* Cygwin <1>: Symbolic Links. (line 534)
-* C_FORMAT: Performance. (line 1449)
+* C_FORMAT: Performance. (line 1470)
* daily data: Daily data in one file.
- (line 10893)
+ (line 10938)
* daily data <1>: One time point one file.
- (line 10959)
+ (line 11004)
* daily data <2>: Multiple files with multiple time points.
- (line 10977)
-* Daniel Baumann: Contributors. (line 10840)
-* Daniel Wang: Contributors. (line 10812)
-* DAP: OPeNDAP. (line 1888)
-* data access protocol: OPeNDAP. (line 1888)
+ (line 11022)
+* Daniel Baumann: Contributors. (line 10885)
+* Daniel Wang: Contributors. (line 10857)
+* DAP: OPeNDAP. (line 1909)
+* data access protocol: OPeNDAP. (line 1909)
* data safety: Temporary Output Files.
- (line 907)
+ (line 928)
* data safety <1>: ncrename netCDF Renamer.
- (line 10367)
-* data, missing: Missing Values. (line 3914)
+ (line 10412)
+* data, missing: Missing Values. (line 3939)
* data, missing <1>: ncatted netCDF Attribute Editor.
- (line 8162)
-* 'date': CF Conventions. (line 5306)
-* 'datesec': CF Conventions. (line 5306)
+ (line 8185)
+* 'date': CF Conventions. (line 5331)
+* 'datesec': CF Conventions. (line 5331)
* DBG_LVL: Help Requests and Bug Reports.
- (line 843)
-* DBG_LVL <1>: Large Datasets. (line 1302)
-* DBG_LVL <2>: OpenMP Threading. (line 1552)
+ (line 864)
+* DBG_LVL <1>: Large Datasets. (line 1323)
+* DBG_LVL <2>: OpenMP Threading. (line 1573)
* DDRA: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* Debian: netCDF2/3/4 and HDF4/5 Support.
- (line 728)
+ (line 746)
* DEBUG-LEVEL: Help Requests and Bug Reports.
- (line 843)
-* DEBUG-LEVEL <1>: Large Datasets. (line 1302)
+ (line 864)
+* DEBUG-LEVEL <1>: Large Datasets. (line 1323)
* debugging: Help Requests and Bug Reports.
- (line 828)
-* debugging <1>: Large Datasets. (line 1302)
-* debugging <2>: OpenMP Threading. (line 1552)
+ (line 849)
+* debugging <1>: Large Datasets. (line 1323)
+* debugging <2>: OpenMP Threading. (line 1573)
* DEC: Compatability. (line 384)
-* 'defdim()': Dimensions. (line 5754)
-* defining dimensions in 'ncap2': Dimensions. (line 5754)
+* 'defdim()': Dimensions. (line 5779)
+* defining dimensions in 'ncap2': Dimensions. (line 5779)
* deflation: netCDF2/3/4 and HDF4/5 Support.
(line 645)
-* deflation <1>: Deflation. (line 4223)
+* deflation <1>: Deflation. (line 4248)
* deflation <2>: ncks netCDF Kitchen Sink.
- (line 9463)
-* degenerate dimension: Chunking. (line 4104)
-* degenerate dimension <1>: Operation Types. (line 4654)
-* degenerate dimension <2>: Examples ncap2. (line 7881)
+ (line 9497)
+* degenerate dimension: Chunking. (line 4129)
+* degenerate dimension <1>: Operation Types. (line 4679)
+* degenerate dimension <2>: Examples ncap2. (line 7904)
* degenerate dimension <3>: ncbo netCDF Binary Operator.
- (line 8543)
+ (line 8566)
* degenerate dimension <4>: ncecat netCDF Ensemble Concatenator.
- (line 8998)
+ (line 9021)
* degenerate dimension <5>: ncflint netCDF File Interpolator.
- (line 9060)
+ (line 9083)
* degenerate dimension <6>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10144)
+ (line 10189)
* degenerate dimension <7>: ncra netCDF Record Averager.
- (line 10196)
+ (line 10241)
* degenerate dimension <8>: ncwa netCDF Weighted Averager.
- (line 10528)
+ (line 10573)
* degenerate dimension <9>: Normalization and Integration.
- (line 10685)
+ (line 10730)
* delete (groups): Group Path Editing.
- (line 2656)
+ (line 2677)
* 'delete_miss()': Missing values ncap2.
- (line 6244)
-* demotion: Type Conversion. (line 4738)
-* Dennis Heimbigner: Contributors. (line 10786)
+ (line 6267)
+* demotion: Type Conversion. (line 4763)
+* Dennis Heimbigner: Contributors. (line 10831)
* derived fields: ncap2 netCDF Arithmetic Processor.
- (line 5514)
+ (line 5539)
* derived fields <1>: ncap2 netCDF Arithmetic Processor.
- (line 5526)
-* digest: MD5 digests. (line 4260)
+ (line 5551)
+* digest: MD5 digests. (line 4285)
* Digital: Compatability. (line 384)
-* dimension limits: Hyperslabs. (line 3073)
+* dimension limits: Hyperslabs. (line 3098)
* dimension names: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* dimension order: Annual Average over Regions.
- (line 11342)
-* dimensions, growing: Examples ncap2. (line 7803)
+ (line 11387)
+* dimensions, growing: Examples ncap2. (line 7826)
* disaggregate: Group Path Editing.
- (line 2778)
+ (line 2799)
* disjoint files: Appending Variables.
- (line 1017)
-* diskless files: RAM disks. (line 4361)
+ (line 1038)
+* diskless files: RAM disks. (line 4386)
* dismember: Group Path Editing.
- (line 2778)
+ (line 2799)
* Distributed Data Reduction & Analysis: Proposals for Institutional Funding.
- (line 10866)
-* Distributed Oceanographic Data System: OPeNDAP. (line 1888)
+ (line 10911)
+* Distributed Oceanographic Data System: OPeNDAP. (line 1909)
* 'divide': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* dividing data: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* division: Intrinsic mathematical methods.
- (line 7903)
-* 'dmn': Chunking. (line 4110)
+ (line 7926)
+* 'dmn': Chunking. (line 4135)
* documentation: Availability. (line 310)
-* DODS: OPeNDAP. (line 1888)
+* DODS: OPeNDAP. (line 1909)
* DODS <1>: Retaining Retrieved Files.
- (line 2056)
-* 'DODS_ROOT': OPeNDAP. (line 1888)
+ (line 2077)
+* 'DODS_ROOT': OPeNDAP. (line 1909)
* dot product: Normalization and Integration.
- (line 10631)
+ (line 10676)
* dot product <1>: Normalization and Integration.
- (line 10650)
+ (line 10695)
* double(): Methods and functions.
- (line 6400)
+ (line 6423)
* double-precision: Intrinsic mathematical methods.
- (line 8009)
-* 'dsort': Sort methods. (line 6577)
-* duration: Subcycle. (line 3289)
+ (line 8032)
+* 'dsort': Sort methods. (line 6600)
+* duration: Subcycle. (line 3314)
* dynamic linking: Libraries. (line 560)
-* Ed Hartnett: Contributors. (line 10786)
-* Ed Hill: Contributors. (line 10842)
-* eddy covariance: Examples ncap2. (line 7839)
+* Ed Hartnett: Contributors. (line 10831)
+* Ed Hill: Contributors. (line 10887)
+* eddy covariance: Examples ncap2. (line 7862)
* editing attributes: ncatted netCDF Attribute Editor.
- (line 8139)
-* 'egrep': Subsetting Files. (line 2493)
+ (line 8162)
+* 'egrep': Subsetting Files. (line 2514)
* Elliptic integrals: GSL special functions.
- (line 7084)
-* ensemble: Concatenation. (line 1095)
+ (line 7107)
+* ensemble: Concatenation. (line 1116)
* ensemble <1>: nces netCDF Ensemble Statistics.
- (line 8710)
+ (line 8733)
* ensemble average: nces netCDF Ensemble Statistics.
- (line 8694)
+ (line 8717)
* ensemble concatenation: ncecat netCDF Ensemble Concatenator.
- (line 8849)
+ (line 8872)
* ERF: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* ERFC: Intrinsic mathematical methods.
- (line 7906)
-* Eric Blake: Contributors. (line 10850)
+ (line 7929)
+* Eric Blake: Contributors. (line 10895)
* error function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* error tolerance: Temporary Output Files.
- (line 907)
-* Etienne Tourigny: Contributors. (line 10856)
-* exclusion: Subsetting Files. (line 2350)
+ (line 928)
+* Etienne Tourigny: Contributors. (line 10901)
+* exclusion: Subsetting Files. (line 2371)
* exclusion <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* exclusion <2>: Filters for 'ncks'.
- (line 9767)
+ (line 9812)
* execution time: Libraries. (line 561)
* execution time <1>: Temporary Output Files.
- (line 922)
-* execution time <2>: Performance. (line 1441)
+ (line 943)
+* execution time <2>: Performance. (line 1462)
* execution time <3>: Metadata Optimization.
- (line 1483)
-* execution time <4>: Missing Values. (line 3973)
+ (line 1504)
+* execution time <4>: Missing Values. (line 3998)
* execution time <5>: ncrename netCDF Renamer.
- (line 10382)
+ (line 10427)
* EXP: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* exponent: Promoting Single-precision to Double.
- (line 5103)
+ (line 5128)
* exponentiation: Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* exponentiation function: Intrinsic mathematical methods.
- (line 7906)
-* expressions: Expressions. (line 5576)
+ (line 7929)
+* expressions: Expressions. (line 5601)
* extended file format: Determining File Format.
- (line 2163)
+ (line 2184)
* extended regular expressions: Large Numbers of Files.
- (line 1208)
-* extended regular expressions <1>: Subsetting Files. (line 2493)
-* extended regular expressions <2>: Examples ncap2. (line 7858)
+ (line 1229)
+* extended regular expressions <1>: Subsetting Files. (line 2514)
+* extended regular expressions <2>: Examples ncap2. (line 7881)
* extended regular expressions <3>: ncatted netCDF Attribute Editor.
- (line 8182)
+ (line 8205)
* extended regular expressions <4>: ncatted netCDF Attribute Editor.
- (line 8389)
-* extraction: Subsetting Files. (line 2350)
+ (line 8412)
+* extraction: Subsetting Files. (line 2371)
* extraction <1>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* extraction <2>: Filters for 'ncks'.
- (line 9767)
+ (line 9812)
* 'f90': Windows Operating System.
(line 498)
* features, requesting: Help Requests and Bug Reports.
- (line 788)
-* File buffers: Buffer sizes. (line 4330)
-* file combination: Combine Files. (line 11007)
+ (line 809)
+* File buffers: Buffer sizes. (line 4355)
+* file combination: Combine Files. (line 11052)
* file deletion: Retaining Retrieved Files.
- (line 2028)
+ (line 2049)
* file multiplication: ncflint netCDF File Interpolator.
- (line 9136)
+ (line 9159)
* file removal: Retaining Retrieved Files.
- (line 2028)
+ (line 2049)
* file retention: Retaining Retrieved Files.
- (line 2028)
+ (line 2049)
* files, multiple: Specifying Input Files.
- (line 1675)
+ (line 1696)
* files, numerous input: Large Numbers of Files.
- (line 1172)
-* Filipe Fernandes: Contributors. (line 10846)
+ (line 1193)
+* Filipe Fernandes: Contributors. (line 10891)
* filters: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* findgen-equivalent: Arrays and hyperslabs.
- (line 5852)
+ (line 5877)
* fix record dimension: ncecat netCDF Ensemble Concatenator.
- (line 8893)
+ (line 8916)
* fix record dimension <1>: ncecat netCDF Ensemble Concatenator.
- (line 8993)
+ (line 9016)
* fix record dimension <2>: ncks netCDF Kitchen Sink.
- (line 9363)
+ (line 9397)
* fixed dimension: ncecat netCDF Ensemble Concatenator.
- (line 8893)
+ (line 8916)
* fixed dimension <1>: ncecat netCDF Ensemble Concatenator.
- (line 8993)
+ (line 9016)
* fixed dimension <2>: ncks netCDF Kitchen Sink.
- (line 9286)
+ (line 9320)
* fixed dimension <3>: ncks netCDF Kitchen Sink.
- (line 9363)
-* flags: Examples ncap2. (line 7817)
+ (line 9397)
+* flags: Examples ncap2. (line 7840)
* flatten (groups): Group Path Editing.
- (line 2656)
-* flattening: Autoconversion. (line 2292)
+ (line 2677)
+* flattening: Autoconversion. (line 2313)
* 'float': Intrinsic mathematical methods.
- (line 8009)
+ (line 8032)
* float(): Methods and functions.
- (line 6397)
+ (line 6420)
* FLOOR: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* floor function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* 'flt_byt': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'flt_sht': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
-* for(): Loops. (line 6522)
-* force append: Batch Mode. (line 5227)
-* force overwrite: Batch Mode. (line 5227)
+ (line 9959)
+* for(): Loops. (line 6545)
+* force append: Batch Mode. (line 5252)
+* force overwrite: Batch Mode. (line 5252)
* foreword: Foreword. (line 203)
* Fortran: Promoting Single-precision to Double.
- (line 4886)
+ (line 4911)
* Fortran <1>: ncra netCDF Record Averager.
- (line 10231)
+ (line 10276)
* Fortran <2>: ncrcat netCDF Record Concatenator.
- (line 10308)
+ (line 10353)
* Fortran index convention: C and Fortran Index Conventions.
- (line 3036)
-* FORTRAN_FORMAT: Performance. (line 1449)
-* Francesco Lovergine: Contributors. (line 10840)
+ (line 3061)
+* FORTRAN_FORMAT: Performance. (line 1470)
+* Francesco Lovergine: Contributors. (line 10885)
* 'ftp': Windows Operating System.
(line 504)
-* 'ftp' <1>: Remote storage. (line 1776)
+* 'ftp' <1>: Remote storage. (line 1797)
* FTP: Retaining Retrieved Files.
- (line 2045)
+ (line 2066)
* funding: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* 'g++': Compatability. (line 402)
* 'g++' <1>: Windows Operating System.
(line 518)
-* 'g2d': Chunking. (line 4060)
-* 'g3d': Chunking. (line 4060)
+* 'g2d': Chunking. (line 4085)
+* 'g3d': Chunking. (line 4085)
* GAG: ncecat netCDF Ensemble Concatenator.
- (line 8901)
+ (line 8924)
* GAMMA: Compatability. (line 453)
* GAMMA <1>: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* gamma function: GSL special functions.
- (line 7050)
+ (line 7073)
* gamma function <1>: Intrinsic mathematical methods.
- (line 7906)
-* Gary Strand: Contributors. (line 10838)
+ (line 7929)
+* Gary Strand: Contributors. (line 10883)
* Gaussian weights: Normalization and Integration.
- (line 10694)
-* Gavin Burris: Contributors. (line 10852)
-* Gayathri Venkitachalam: Contributors. (line 10834)
+ (line 10739)
+* Gavin Burris: Contributors. (line 10897)
+* Gayathri Venkitachalam: Contributors. (line 10879)
* 'gcc': Compatability. (line 402)
* 'gcc' <1>: Windows Operating System.
(line 518)
* GCM: Climate Model Paradigm.
- (line 896)
+ (line 917)
* GCM <1>: Promoting Single-precision to Double.
- (line 5025)
-* geographical weight: Monthly Cycle. (line 11633)
-* George Shapavalov: Contributors. (line 10844)
-* George Shapovalov: Contributors. (line 10822)
-* George White: Contributors. (line 10838)
+ (line 5050)
+* geographical weight: Monthly Cycle. (line 11678)
+* George Shapavalov: Contributors. (line 10889)
+* George Shapovalov: Contributors. (line 10867)
+* George White: Contributors. (line 10883)
* 'gethostname': Windows Operating System.
(line 502)
* 'getopt': Command Line Options.
- (line 1582)
+ (line 1603)
* 'getopt.h': Command Line Options.
- (line 1582)
+ (line 1603)
* 'getopt_long': Command Line Options.
- (line 1582)
+ (line 1603)
* 'getuid': Windows Operating System.
(line 502)
* 'get_miss()': Missing values ncap2.
- (line 6239)
-* Glenn Davis: Contributors. (line 10786)
+ (line 6262)
+* Glenn Davis: Contributors. (line 10831)
* 'global' attribute: ncatted netCDF Attribute Editor.
- (line 8371)
+ (line 8394)
* 'global' attribute <1>: ncrename netCDF Renamer.
- (line 10391)
+ (line 10436)
* global attributes: Large Numbers of Files.
- (line 1200)
-* global attributes <1>: History Attribute. (line 5247)
+ (line 1221)
+* global attributes <1>: History Attribute. (line 5272)
* global attributes <2>: File List Attributes.
- (line 5275)
-* global attributes <3>: ARM Conventions. (line 5450)
+ (line 5300)
+* global attributes <3>: ARM Conventions. (line 5475)
* global attributes <4>: ncatted netCDF Attribute Editor.
- (line 8204)
+ (line 8227)
* global attributes <5>: ncatted netCDF Attribute Editor.
- (line 8371)
+ (line 8394)
* global attributes <6>: ncks netCDF Kitchen Sink.
- (line 9197)
+ (line 9220)
* global attributes <7>: ncks netCDF Kitchen Sink.
- (line 9231)
+ (line 9254)
* global attributes <8>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* global attributes <9>: ncrename netCDF Renamer.
- (line 10391)
+ (line 10436)
* global attributes <10>: ncrename netCDF Renamer.
- (line 10471)
+ (line 10516)
* globbing: Large Numbers of Files.
- (line 1208)
+ (line 1229)
* globbing <1>: Specifying Input Files.
- (line 1641)
-* globbing <2>: Subsetting Files. (line 2568)
-* globbing <3>: Examples ncap2. (line 7858)
+ (line 1662)
+* globbing <2>: Subsetting Files. (line 2589)
+* globbing <3>: Examples ncap2. (line 7881)
* globbing <4>: ncbo netCDF Binary Operator.
- (line 8475)
+ (line 8498)
* globbing <5>: ncra netCDF Record Averager.
- (line 10223)
+ (line 10268)
* globbing <6>: ncrcat netCDF Record Concatenator.
- (line 10301)
+ (line 10346)
* GNU: Command Line Options.
- (line 1569)
-* GNU <1>: Subsetting Files. (line 2493)
+ (line 1590)
+* GNU <1>: Subsetting Files. (line 2514)
* 'gnu-win32': Windows Operating System.
(line 498)
-* GNU/Linux: Large Datasets. (line 1292)
+* GNU/Linux: Large Datasets. (line 1313)
* 'GNUmakefile': Windows Operating System.
(line 498)
-* God: UDUnits Support. (line 3813)
-* 'grep -E': Subsetting Files. (line 2493)
+* God: UDUnits Support. (line 3838)
+* 'grep -E': Subsetting Files. (line 2514)
* group aggregation: ncecat netCDF Ensemble Concatenator.
- (line 8901)
-* group aggregation <1>: Combine Files. (line 11113)
+ (line 8924)
+* group aggregation <1>: Combine Files. (line 11158)
* group names: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* group path: Group Path Editing.
- (line 2637)
+ (line 2658)
* group, aggregation: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* group, anomaly: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* group, dimension permutation: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* group, spatial averaging: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* group, standard deviation: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* group, temporal averaging: Annual Average over Regions.
- (line 11567)
+ (line 11612)
* groups: netCDF2/3/4 and HDF4/5 Support.
(line 654)
* groups <1>: ncatted netCDF Attribute Editor.
- (line 8395)
+ (line 8418)
* groups, averaging: Global Distribution of Long-term Average.
- (line 11320)
-* groups, creating: Combine Files. (line 11113)
+ (line 11365)
+* groups, creating: Combine Files. (line 11158)
* groups, moving: Group Path Editing.
- (line 2744)
+ (line 2765)
* groups, renaming: Group Path Editing.
- (line 2744)
-* growing dimensions: Examples ncap2. (line 7803)
+ (line 2765)
+* growing dimensions: Examples ncap2. (line 7826)
* GSL: Compatability. (line 446)
* GSL <1>: GSL special functions.
- (line 7035)
-* GSL <2>: GSL interpolation. (line 7427)
+ (line 7058)
+* GSL <2>: GSL interpolation. (line 7450)
* GSL_SF_BESSEL_JN: GSL special functions.
- (line 7064)
+ (line 7087)
* GSL_SF_GAMMA: GSL special functions.
- (line 7050)
+ (line 7073)
* gsl_sf_legendre_Pl: GSL special functions.
- (line 7119)
-* 'gw': CF Conventions. (line 5306)
+ (line 7142)
+* 'gw': CF Conventions. (line 5331)
* 'gw' <1>: Normalization and Integration.
- (line 10694)
+ (line 10739)
* H4CF: netCDF2/3/4 and HDF4/5 Support.
- (line 674)
+ (line 737)
* 'h4tonccf': netCDF2/3/4 and HDF4/5 Support.
- (line 674)
-* Harry Mangalam: Contributors. (line 10815)
-* hash: MD5 digests. (line 4260)
+ (line 737)
+* Harry Mangalam: Contributors. (line 10860)
+* hash: MD5 digests. (line 4285)
* HDF: netCDF2/3/4 and HDF4/5 Support.
(line 597)
* HDF <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* HDF <2>: ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* HDF <3>: Proposals for Institutional Funding.
- (line 10873)
-* HDF unpacking: Packed data. (line 4517)
+ (line 10918)
+* HDF unpacking: Packed data. (line 4542)
* HDF4: netCDF2/3/4 and HDF4/5 Support.
(line 674)
* HDF4 <1>: ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* HDF5: netCDF2/3/4 and HDF4/5 Support.
(line 611)
* HDF5 <1>: netCDF2/3/4 and HDF4/5 Support.
(line 667)
+* 'hdf_name': netCDF2/3/4 and HDF4/5 Support.
+ (line 728)
* 'hdp': ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* help: Help Requests and Bug Reports.
- (line 788)
-* Henry Butowsky: Contributors. (line 10801)
+ (line 809)
+* Henry Butowsky: Contributors. (line 10846)
* 'hgh_byt': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'hgh_sht': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* hidden attributes: ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* Hierarchical Data Format: netCDF2/3/4 and HDF4/5 Support.
(line 597)
* 'history': Large Numbers of Files.
- (line 1252)
-* 'history' <1>: Remote storage. (line 1776)
-* 'history' <2>: History Attribute. (line 5247)
-* 'history' <3>: ARM Conventions. (line 5450)
+ (line 1273)
+* 'history' <1>: Remote storage. (line 1797)
+* 'history' <2>: History Attribute. (line 5272)
+* 'history' <3>: ARM Conventions. (line 5475)
* 'history' <4>: ncatted netCDF Attribute Editor.
- (line 8157)
+ (line 8180)
* 'history' <5>: Filters for 'ncks'.
- (line 9685)
+ (line 9730)
* 'hncgen': ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* HP: Compatability. (line 384)
-* HPSS: Remote storage. (line 1814)
-* 'hsi': Remote storage. (line 1814)
+* HPSS: Remote storage. (line 1835)
+* 'hsi': Remote storage. (line 1835)
* HTML: Availability. (line 310)
-* HTTP protocol: OPeNDAP. (line 1888)
-* 'hyai': CF Conventions. (line 5306)
-* 'hyam': CF Conventions. (line 5306)
-* 'hybi': CF Conventions. (line 5306)
-* 'hybm': CF Conventions. (line 5306)
-* hybrid coordinate system: Left hand casting. (line 5806)
+* HTTP protocol: OPeNDAP. (line 1909)
+* 'hyai': CF Conventions. (line 5331)
+* 'hyam': CF Conventions. (line 5331)
+* 'hybi': CF Conventions. (line 5331)
+* 'hybm': CF Conventions. (line 5331)
+* hybrid coordinate system: Left hand casting. (line 5831)
* hyperbolic arccosine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* hyperbolic arcsine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* hyperbolic arctangent function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* hyperbolic cosine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* hyperbolic sine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* hyperbolic tangent: Intrinsic mathematical methods.
- (line 7906)
-* hyperslab: Hyperslabs. (line 3073)
-* hyperslab <1>: Chunking. (line 4050)
+ (line 7929)
+* hyperslab: Hyperslabs. (line 3098)
+* hyperslab <1>: Chunking. (line 4075)
* hyperslab <2>: nces netCDF Ensemble Statistics.
- (line 8728)
+ (line 8751)
* hyperslab <3>: ncecat netCDF Ensemble Concatenator.
- (line 8887)
+ (line 8910)
* hyperslab <4>: ncra netCDF Record Averager.
- (line 10207)
+ (line 10252)
* hyperslab <5>: ncrcat netCDF Record Concatenator.
- (line 10277)
+ (line 10322)
* hyperslab <6>: ncwa netCDF Weighted Averager.
- (line 10540)
+ (line 10585)
* hyperslabs: Arrays and hyperslabs.
- (line 5879)
-* I/O: OPeNDAP. (line 1960)
+ (line 5904)
+* I/O: OPeNDAP. (line 1981)
* I/O <1>: C and Fortran Index Conventions.
- (line 3040)
-* I/O <2>: Multislabs. (line 3415)
-* I/O block size: Buffer sizes. (line 4330)
+ (line 3065)
+* I/O <2>: Multislabs. (line 3440)
+* I/O block size: Buffer sizes. (line 4355)
* I18N: Internationalization.
- (line 1475)
+ (line 1496)
* IBM: Compatability. (line 384)
* 'icc': Compatability. (line 402)
-* ID Quoting: ID Quoting. (line 8074)
-* IDL: Philosophy. (line 879)
+* ID Quoting: ID Quoting. (line 8097)
+* IDL: Philosophy. (line 900)
* IEEE: Automatic type conversion.
- (line 4844)
+ (line 4869)
* IEEE NaN: ncatted netCDF Attribute Editor.
- (line 8352)
-* if(): if statement. (line 6100)
-* 'ilimit': Large Datasets. (line 1290)
+ (line 8375)
+* if(): if statement. (line 6123)
+* 'ilimit': Large Datasets. (line 1311)
+* illegal names: netCDF2/3/4 and HDF4/5 Support.
+ (line 728)
* implicit conversion: Promoting Single-precision to Double.
- (line 4874)
-* 'include': Include files. (line 6562)
+ (line 4899)
+* 'include': Include files. (line 6585)
* including files: Syntax of ncap2 statements.
- (line 5569)
+ (line 5594)
* index convention: C and Fortran Index Conventions.
- (line 3036)
+ (line 3061)
* indgen-equivalent: Arrays and hyperslabs.
- (line 5852)
+ (line 5877)
* inexact conversion: Intrinsic mathematical methods.
- (line 7973)
+ (line 7996)
* Info: Availability. (line 310)
* input files: Large Numbers of Files.
- (line 1226)
+ (line 1247)
* input files <1>: Specifying Input Files.
- (line 1641)
+ (line 1662)
* input files <2>: Specifying Output Files.
- (line 1744)
+ (line 1765)
* input files <3>: Specifying Output Files.
- (line 1761)
+ (line 1782)
* INPUT-PATH: Specifying Input Files.
- (line 1641)
-* INPUT-PATH <1>: Remote storage. (line 1837)
+ (line 1662)
+* INPUT-PATH <1>: Remote storage. (line 1858)
* installation: Compatability. (line 384)
* installation <1>: Help Requests and Bug Reports.
- (line 851)
+ (line 872)
* int(): Methods and functions.
- (line 6395)
+ (line 6418)
* int64(): Methods and functions.
- (line 6410)
+ (line 6433)
* integration: Normalization and Integration.
- (line 10631)
-* integrity: MD5 digests. (line 4260)
+ (line 10676)
+* integrity: MD5 digests. (line 4285)
* Intel: Compatability. (line 384)
* Internationalization: Internationalization.
- (line 1475)
-* interoperability: Packed data. (line 4517)
+ (line 1496)
+* interoperability: Packed data. (line 4542)
* interpolation: ncflint netCDF File Interpolator.
- (line 9009)
-* interpolation <1>: Regrid MODIS Data. (line 11797)
-* intersection: Subsetting Files. (line 2350)
-* intersection <1>: Subsetting Files. (line 2441)
+ (line 9032)
+* interpolation <1>: Regrid MODIS Data. (line 11842)
+* intersection: Subsetting Files. (line 2371)
+* intersection <1>: Subsetting Files. (line 2462)
* introduction: Introduction. (line 299)
* introduction <1>: How to Use This guide.
(line 350)
-* 'invert_map': Sort methods. (line 6577)
+* 'invert_map': Sort methods. (line 6600)
* IPCC: nces netCDF Ensemble Statistics.
- (line 8733)
+ (line 8756)
* IPCC <1>: Proposals for Institutional Funding.
- (line 10866)
-* irregular grids: Irregular grids. (line 6822)
+ (line 10911)
+* irregular grids: Irregular grids. (line 6845)
* ISO: Compatability. (line 407)
-* James Gallagher: Contributors. (line 10786)
-* Jim Edwards: Contributors. (line 10828)
-* Joe Hamman: Contributors. (line 10810)
-* John Caron: Contributors. (line 10786)
-* Juliana Rew: Contributors. (line 10830)
-* Karen Schuchardt: Contributors. (line 10832)
-* Keith Lindsay: Contributors. (line 10838)
+* James Gallagher: Contributors. (line 10831)
+* Jim Edwards: Contributors. (line 10873)
+* Joe Hamman: Contributors. (line 10855)
+* John Caron: Contributors. (line 10831)
+* Juliana Rew: Contributors. (line 10875)
+* Karen Schuchardt: Contributors. (line 10877)
+* Keith Lindsay: Contributors. (line 10883)
* kitchen sink: ncks netCDF Kitchen Sink.
- (line 9162)
-* Kyle Wilcox: Contributors. (line 10852)
+ (line 9185)
+* Kyle Wilcox: Contributors. (line 10897)
* L10N: Internationalization.
- (line 1476)
-* large datasets: Large Datasets. (line 1269)
-* large datasets <1>: OpenMP Threading. (line 1530)
-* Large File Support: Large Datasets. (line 1269)
+ (line 1497)
+* large datasets: Large Datasets. (line 1290)
+* large datasets <1>: OpenMP Threading. (line 1551)
+* Large File Support: Large Datasets. (line 1290)
* Large File Support <1>: Large File Support.
- (line 2316)
-* 'lat_bnds': CF Conventions. (line 5306)
+ (line 2337)
+* 'lat_bnds': CF Conventions. (line 5331)
* 'LD_LIBRARY_PATH': Libraries. (line 560)
-* left hand casting: Memory for ncap2. (line 1402)
-* left hand casting <1>: Left hand casting. (line 5806)
+* left hand casting: Memory for ncap2. (line 1423)
+* left hand casting <1>: Left hand casting. (line 5831)
* Legendre polynomial: GSL special functions.
- (line 7119)
-* Lempel-Ziv deflation: Deflation. (line 4223)
-* Len Makin: Contributors. (line 10826)
+ (line 7142)
+* Lempel-Ziv deflation: Deflation. (line 4248)
+* Len Makin: Contributors. (line 10871)
* lexer: ncap2 netCDF Arithmetic Processor.
- (line 5489)
-* 'lfp': Chunking. (line 4110)
-* LFS: Large Datasets. (line 1269)
+ (line 5514)
+* 'lfp': Chunking. (line 4135)
+* LFS: Large Datasets. (line 1290)
* LFS <1>: Large File Support.
- (line 2316)
-* LHS: Left hand casting. (line 5806)
+ (line 2337)
+* LHS: Left hand casting. (line 5831)
* 'libnco': Compatability. (line 407)
* libraries: Libraries. (line 560)
* linkers: Specifying Output Files.
- (line 1766)
+ (line 1787)
* Linux: Intrinsic mathematical methods.
- (line 8011)
+ (line 8034)
* LLVM: Compatability. (line 405)
* LN: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* 'ln -s': ncbo netCDF Binary Operator.
- (line 8489)
+ (line 8512)
* 'ln -s' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9902)
+ (line 9947)
* LOG: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* LOG10: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* logarithm, base 10: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* logarithm, natural: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* 'long double': Intrinsic mathematical methods.
- (line 8009)
+ (line 8032)
* long options: Command Line Options.
- (line 1581)
+ (line 1602)
* long options <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10076)
+ (line 10121)
* long-term average: Global Distribution of Long-term Average.
- (line 11239)
+ (line 11284)
* longitude: Wrapped Coordinates.
- (line 3509)
-* 'lon_bnds': CF Conventions. (line 5306)
-* Lori Sentman: Contributors. (line 10838)
+ (line 3534)
+* 'lon_bnds': CF Conventions. (line 5331)
+* Lori Sentman: Contributors. (line 10883)
* 'lrint()'.: Automatic type conversion.
- (line 4844)
+ (line 4869)
* 'lround()'.: Automatic type conversion.
- (line 4836)
-* Luk Claes: Contributors. (line 10840)
+ (line 4861)
+* Luk Claes: Contributors. (line 10885)
* Macintosh: Compatability. (line 384)
* 'Makefile': Compatability. (line 412)
* 'Makefile' <1>: Windows Operating System.
(line 498)
-* 'Makefile' <2>: OPeNDAP. (line 1900)
-* malloc(): Memory for ncap2. (line 1411)
+* 'Makefile' <2>: OPeNDAP. (line 1921)
+* malloc(): Memory for ncap2. (line 1432)
* mantissa: Promoting Single-precision to Double.
- (line 5103)
-* manual type conversion: Type Conversion. (line 4738)
-* 'map_dmn': Chunking. (line 4110)
-* 'map_lfp': Chunking. (line 4110)
-* 'map_prd': Chunking. (line 4110)
-* 'map_rd1': Chunking. (line 4110)
-* 'map_scl': Chunking. (line 4110)
-* 'map_xst': Chunking. (line 4110)
-* Mark Flanner: Contributors. (line 10838)
-* Markus Liebig: Contributors. (line 10838)
-* Martin Dix: Contributors. (line 10838)
-* Martin Otte: Contributors. (line 10856)
-* Martin Schmidt: Contributors. (line 10838)
+ (line 5128)
+* manual type conversion: Type Conversion. (line 4763)
+* 'map_dmn': Chunking. (line 4135)
+* 'map_lfp': Chunking. (line 4135)
+* 'map_prd': Chunking. (line 4135)
+* 'map_rd1': Chunking. (line 4135)
+* 'map_scl': Chunking. (line 4135)
+* 'map_xst': Chunking. (line 4135)
+* Mark Flanner: Contributors. (line 10883)
+* Markus Liebig: Contributors. (line 10883)
+* Martin Dix: Contributors. (line 10883)
+* Martin Otte: Contributors. (line 10901)
+* Martin Schmidt: Contributors. (line 10883)
* Martin Schultz: Group Path Editing.
- (line 2877)
-* mask: Irregular grids. (line 6822)
-* mask <1>: Examples ncap2. (line 7826)
-* mask condition: Mask condition. (line 10602)
+ (line 2902)
+* mask: Irregular grids. (line 6845)
+* mask <1>: Examples ncap2. (line 7849)
+* mask condition: Mask condition. (line 10647)
* mask condition <1>: Normalization and Integration.
- (line 10733)
+ (line 10778)
* masked average: ncwa netCDF Weighted Averager.
- (line 10508)
-* Mass Store System: Remote storage. (line 1776)
-* Matej Vela: Contributors. (line 10840)
+ (line 10553)
+* Mass Store System: Remote storage. (line 1797)
+* Matej Vela: Contributors. (line 10885)
* mathematical functions: Intrinsic mathematical methods.
- (line 7906)
-* Matlab: Philosophy. (line 879)
-* 'max': Operation Types. (line 4585)
+ (line 7929)
+* Matlab: Philosophy. (line 900)
+* 'max': Operation Types. (line 4610)
* max(): Methods and functions.
- (line 6303)
-* maximum: Operation Types. (line 4585)
-* MD5 digest: MD5 digests. (line 4260)
-* mean: Operation Types. (line 4585)
+ (line 6326)
+* maximum: Operation Types. (line 4610)
+* MD5 digest: MD5 digests. (line 4285)
+* mean: Operation Types. (line 4610)
* memory available: Memory Requirements.
- (line 1313)
-* memory available <1>: RAM disks. (line 4361)
-* memory leaks: Memory for ncap2. (line 1402)
+ (line 1334)
+* memory available <1>: RAM disks. (line 4386)
+* memory leaks: Memory for ncap2. (line 1423)
* memory requirements: Memory Requirements.
- (line 1313)
-* memory requirements <1>: Subsetting Files. (line 2474)
-* memory requirements <2>: RAM disks. (line 4361)
+ (line 1334)
+* memory requirements <1>: Subsetting Files. (line 2495)
+* memory requirements <2>: RAM disks. (line 4386)
* merging files: Appending Variables.
- (line 995)
+ (line 1016)
* merging files <1>: ncks netCDF Kitchen Sink.
- (line 9211)
+ (line 9234)
* metadata: ncks netCDF Kitchen Sink.
- (line 9459)
+ (line 9493)
* metadata optimization: Metadata Optimization.
- (line 1483)
+ (line 1504)
* metadata, global: ncecat netCDF Ensemble Concatenator.
- (line 8934)
+ (line 8957)
* metadata, global <1>: ncks netCDF Kitchen Sink.
- (line 9416)
+ (line 9450)
* Michael Decker: Group Path Editing.
- (line 2877)
+ (line 2902)
* Michael Prather: Promoting Single-precision to Double.
- (line 5212)
-* Michael Schulz: Contributors. (line 10838)
+ (line 5237)
+* Michael Schulz: Contributors. (line 10883)
* Microsoft: Compatability. (line 384)
* Microsoft <1>: Windows Operating System.
(line 483)
@@ -14101,1106 +14158,1108 @@ General Index
(line 483)
* Mike Folk: netCDF2/3/4 and HDF4/5 Support.
(line 597)
-* Mike Page: Contributors. (line 10838)
-* 'min': Operation Types. (line 4585)
+* Mike Page: Contributors. (line 10883)
+* 'min': Operation Types. (line 4610)
* min(): Methods and functions.
- (line 6305)
-* minimum: Operation Types. (line 4585)
-* missing values: Missing Values. (line 3914)
+ (line 6328)
+* minimum: Operation Types. (line 4610)
+* missing values: Missing Values. (line 3939)
* missing values <1>: ncatted netCDF Attribute Editor.
- (line 8162)
+ (line 8185)
* missing values <2>: ncflint netCDF File Interpolator.
- (line 9082)
+ (line 9105)
* missing values <3>: ncks netCDF Kitchen Sink.
- (line 9472)
+ (line 9506)
* missing values ncap2: Missing values ncap2.
- (line 6196)
-* 'missing_value': Missing Values. (line 3914)
-* 'missing_value' <1>: Packed data. (line 4448)
+ (line 6219)
+* 'missing_value': Missing Values. (line 3939)
+* 'missing_value' <1>: Packed data. (line 4473)
* 'missing_value' <2>: ncrename netCDF Renamer.
- (line 10471)
-* MKS units: UDUnits Support. (line 3683)
-* MKS units <1>: UDUnits Support. (line 3813)
-* MODIS: Regrid MODIS Data. (line 11797)
+ (line 10516)
+* MKS units: UDUnits Support. (line 3708)
+* MKS units <1>: UDUnits Support. (line 3838)
+* MODIS: Regrid MODIS Data. (line 11842)
* MODIS <1>: Add Coordinates to MODIS Data.
- (line 11935)
+ (line 11980)
* modulus: Intrinsic mathematical methods.
- (line 7903)
-* monotonic coordinates: Performance. (line 1444)
+ (line 7926)
+* monotonic coordinates: Performance. (line 1465)
* monthly average: Daily data in one file.
- (line 10896)
-* monthly average <1>: Monthly Cycle. (line 11633)
+ (line 10941)
+* monthly average <1>: Monthly Cycle. (line 11678)
* monthly data: Monthly data in one file.
- (line 10927)
+ (line 10972)
* monthly data <1>: One time point one file.
- (line 10959)
+ (line 11004)
* monthly data <2>: Multiple files with multiple time points.
- (line 10977)
+ (line 11022)
* move groups: Group Path Editing.
- (line 2744)
-* MRO: Subcycle. (line 3289)
-* MSA: Multislabs. (line 3365)
-* 'msk_*': CF Conventions. (line 5306)
-* 'msrcp': Remote storage. (line 1814)
+ (line 2765)
+* MRO: Subcycle. (line 3314)
+* MSA: Multislabs. (line 3390)
+* 'msk_*': CF Conventions. (line 5331)
+* 'msrcp': Remote storage. (line 1835)
* msrcp: Retaining Retrieved Files.
- (line 2045)
-* 'msread': Remote storage. (line 1814)
-* MSS: Remote storage. (line 1776)
+ (line 2066)
+* 'msread': Remote storage. (line 1835)
+* MSS: Remote storage. (line 1797)
* multi-file operators: Single and Multi-file Operators.
- (line 1331)
+ (line 1352)
* multi-file operators <1>: Specifying Input Files.
- (line 1675)
+ (line 1696)
* multi-file operators <2>: Specifying Output Files.
- (line 1756)
+ (line 1777)
* multi-file operators <3>: nces netCDF Ensemble Statistics.
- (line 8763)
+ (line 8786)
* multi-file operators <4>: ncecat netCDF Ensemble Concatenator.
- (line 8929)
+ (line 8952)
* multi-file operators <5>: ncra netCDF Record Averager.
- (line 10200)
+ (line 10245)
* multi-file operators <6>: ncrcat netCDF Record Concatenator.
- (line 10270)
-* multi-hyperslab: Multislabs. (line 3365)
-* Multi-Record Operator: Subcycle. (line 3289)
+ (line 10315)
+* multi-hyperslab: Multislabs. (line 3390)
+* Multi-Record Operator: Subcycle. (line 3314)
* multiplication: Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* multiplication <1>: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* multiplication <2>: ncflint netCDF File Interpolator.
- (line 9136)
+ (line 9159)
* 'multiply': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* multiplying data: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* multiplying data <1>: ncflint netCDF File Interpolator.
- (line 9009)
-* multislab: Multislabs. (line 3365)
-* 'mv': Subsetting Files. (line 2392)
+ (line 9032)
+* multislab: Multislabs. (line 3390)
+* 'mv': Subsetting Files. (line 2413)
* 'MVS': Compatability. (line 402)
* MVS: Windows Operating System.
(line 483)
* naked characters: ncbo netCDF Binary Operator.
- (line 8474)
+ (line 8497)
* NaN: ncatted netCDF Attribute Editor.
- (line 8352)
+ (line 8375)
* NASA: Proposals for Institutional Funding.
- (line 10873)
+ (line 10918)
* NASA EOSDIS: Large Numbers of Files.
- (line 1173)
-* National Virtual Ocean Data System: OPeNDAP. (line 1990)
+ (line 1194)
+* National Virtual Ocean Data System: OPeNDAP. (line 2011)
* ncadd: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* ncap: ncap2 netCDF Arithmetic Processor.
- (line 5489)
+ (line 5514)
* ncap2: Compatability. (line 446)
* ncap2 <1>: ncap2 netCDF Arithmetic Processor.
- (line 5489)
-* 'ncap2': Memory for ncap2. (line 1402)
-* 'ncap2' <1>: OpenMP Threading. (line 1530)
+ (line 5514)
+* 'ncap2': Memory for ncap2. (line 1423)
+* 'ncap2' <1>: OpenMP Threading. (line 1551)
* 'ncap2' <2>: Manual type conversion.
- (line 5217)
+ (line 5242)
* 'ncap2' <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9834)
+ (line 9879)
* NCAR: Climate Model Paradigm.
- (line 896)
-* NCAR MSS: Remote storage. (line 1776)
-* ncatted: Missing Values. (line 3941)
+ (line 917)
+* NCAR MSS: Remote storage. (line 1797)
+* ncatted: Missing Values. (line 3966)
* ncatted <1>: ncatted netCDF Attribute Editor.
- (line 8139)
-* 'ncatted': Subsetting Files. (line 2493)
-* 'ncatted' <1>: Missing Values. (line 3966)
-* 'ncatted' <2>: History Attribute. (line 5265)
+ (line 8162)
+* 'ncatted': Subsetting Files. (line 2514)
+* 'ncatted' <1>: Missing Values. (line 3991)
+* 'ncatted' <2>: History Attribute. (line 5290)
* 'ncattget': ncatted netCDF Attribute Editor.
- (line 8146)
+ (line 8169)
* 'ncattget' <1>: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'ncavg': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* ncbo: ncbo netCDF Binary Operator.
- (line 8427)
-* 'ncbo': Missing Values. (line 3989)
+ (line 8450)
+* 'ncbo': Missing Values. (line 4014)
* ncdiff: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* ncdismember: Group Path Editing.
- (line 2778)
+ (line 2799)
* ncdismember <1>: Group Path Editing.
- (line 2877)
+ (line 2902)
* ncdivide: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* 'ncdmnsz': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'ncdump': Determining File Format.
- (line 2185)
+ (line 2206)
* 'ncdump' <1>: ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* 'ncdump' <2>: ncks netCDF Kitchen Sink.
- (line 9459)
+ (line 9493)
* 'ncdump' <3>: ncks netCDF Kitchen Sink.
- (line 9508)
+ (line 9553)
* ncecat: ncecat netCDF Ensemble Concatenator.
- (line 8849)
-* 'ncecat': Concatenation. (line 1082)
+ (line 8872)
+* 'ncecat': Concatenation. (line 1103)
* nces: nces netCDF Ensemble Statistics.
- (line 8694)
-* 'nces': Averaging. (line 1140)
-* 'nces' <1>: Missing Values. (line 3989)
+ (line 8717)
+* 'nces': Averaging. (line 1161)
+* 'nces' <1>: Missing Values. (line 4014)
* 'ncextr': ncks netCDF Kitchen Sink.
- (line 9175)
+ (line 9198)
* ncflint: ncflint netCDF File Interpolator.
- (line 9009)
-* 'ncflint': Interpolating. (line 1162)
-* 'ncflint' <1>: Missing Values. (line 3989)
+ (line 9032)
+* 'ncflint': Interpolating. (line 1183)
+* 'ncflint' <1>: Missing Values. (line 4014)
* 'ncgen': ncks netCDF Kitchen Sink.
- (line 9323)
+ (line 9357)
* 'ncgen-hdf': ncks netCDF Kitchen Sink.
- (line 9323)
-* ncks: Deflation. (line 4254)
-* ncks <1>: Examples ncap2. (line 7881)
+ (line 9357)
+* ncks: Deflation. (line 4279)
+* ncks <1>: Examples ncap2. (line 7904)
* ncks <2>: ncks netCDF Kitchen Sink.
- (line 9162)
+ (line 9185)
* 'ncks': Determining File Format.
- (line 2154)
-* NCL: Philosophy. (line 879)
+ (line 2175)
+* NCL: Philosophy. (line 900)
* NCL <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10030)
+ (line 10075)
* 'nclist': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'ncl_convert2nc': netCDF2/3/4 and HDF4/5 Support.
- (line 674)
+ (line 714)
* 'ncl_convert2nc' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10030)
+ (line 10075)
* 'ncmax': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'ncmdn': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* 'ncmin': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* NcML: ncks netCDF Kitchen Sink.
- (line 9508)
+ (line 9553)
* ncmult: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* ncmultiply: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* NCO availability: Availability. (line 302)
* NCO homepage: Availability. (line 326)
* nco script file: Annual Average over Regions.
- (line 11342)
+ (line 11387)
* 'NCO User Guide': Availability. (line 310)
* 'nco.config.log.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 851)
+ (line 872)
* 'nco.configure.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 851)
+ (line 872)
* 'nco.make.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 851)
+ (line 872)
* 'nco_input_file_list': Large Numbers of Files.
- (line 1200)
+ (line 1221)
* 'nco_input_file_list' <1>: File List Attributes.
- (line 5275)
+ (line 5300)
* 'nco_input_file_number': Large Numbers of Files.
- (line 1200)
+ (line 1221)
* 'nco_input_file_number' <1>: File List Attributes.
- (line 5275)
-* 'nco_openmp_thread_number': OpenMP Threading. (line 1504)
+ (line 5300)
+* 'nco_openmp_thread_number': OpenMP Threading. (line 1525)
* ncpack: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
-* ncpdq: Chunking. (line 4050)
+ (line 9861)
+* ncpdq: Chunking. (line 4075)
* ncpdq <1>: ncecat netCDF Ensemble Concatenator.
- (line 8956)
+ (line 8979)
* ncpdq <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* ncpdq <3>: ncrcat netCDF Record Concatenator.
- (line 10282)
-* 'ncpdq': Concatenation. (line 1115)
-* 'ncpdq' <1>: OpenMP Threading. (line 1530)
-* ncra: Examples ncap2. (line 7881)
+ (line 10327)
+* 'ncpdq': Concatenation. (line 1136)
+* 'ncpdq' <1>: OpenMP Threading. (line 1551)
+* ncra: Examples ncap2. (line 7904)
* ncra <1>: ncra netCDF Record Averager.
- (line 10183)
-* 'ncra': Averaging. (line 1140)
-* 'ncra' <1>: Missing Values. (line 3989)
+ (line 10228)
+* 'ncra': Averaging. (line 1161)
+* 'ncra' <1>: Missing Values. (line 4014)
* ncrcat: ncrcat netCDF Record Concatenator.
- (line 10254)
-* 'ncrcat': Concatenation. (line 1082)
-* 'ncrcat' <1>: OpenMP Threading. (line 1530)
+ (line 10299)
+* 'ncrcat': Concatenation. (line 1103)
+* 'ncrcat' <1>: OpenMP Threading. (line 1551)
* 'ncrecsz': Filters for 'ncks'.
- (line 9592)
-* ncrename: Missing Values. (line 3941)
+ (line 9637)
+* ncrename: Missing Values. (line 3966)
* ncrename <1>: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* 'ncrng': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* NCSA: netCDF2/3/4 and HDF4/5 Support.
(line 611)
* ncsub: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* ncsubtract: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* 'ncunits': Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* ncunpack: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
-* ncwa: Examples ncap2. (line 7881)
+ (line 9861)
+* ncwa: Examples ncap2. (line 7904)
* ncwa <1>: ncwa netCDF Weighted Averager.
- (line 10508)
-* 'ncwa': Averaging. (line 1140)
-* 'ncwa' <1>: OpenMP Threading. (line 1530)
-* 'ncwa' <2>: Missing Values. (line 3989)
+ (line 10553)
+* 'ncwa': Averaging. (line 1161)
+* 'ncwa' <1>: OpenMP Threading. (line 1551)
+* 'ncwa' <2>: Missing Values. (line 4014)
* 'NC_BYTE': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
-* 'NC_CHAR': Hyperslabs. (line 3144)
+ (line 9959)
+* 'NC_CHAR': Hyperslabs. (line 3169)
* 'NC_CHAR' <1>: ncbo netCDF Binary Operator.
- (line 8548)
+ (line 8571)
* 'NC_CHAR' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
-* 'NC_DISKLESS': RAM disks. (line 4361)
+ (line 9959)
+* 'NC_DISKLESS': RAM disks. (line 4386)
* 'NC_DOUBLE': Intrinsic mathematical methods.
- (line 8009)
+ (line 8032)
* 'NC_DOUBLE' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_FLOAT': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_FORMAT_DAP2': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_FORMAT_DAP4': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_FORMAT_NC3': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_FORMAT_NC_HDF4': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_FORMAT_NC_HDF5': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_FORMAT_PNETCDF': Determining File Format.
- (line 2163)
+ (line 2184)
* 'NC_INT': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_INT64': netCDF2/3/4 and HDF4/5 Support.
(line 636)
* 'NC_INT64' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_SHORT': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_UBYTE': netCDF2/3/4 and HDF4/5 Support.
(line 636)
* 'NC_UBYTE' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_UINT': netCDF2/3/4 and HDF4/5 Support.
(line 636)
* 'NC_UINT' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_UINT64': netCDF2/3/4 and HDF4/5 Support.
(line 636)
* 'NC_UINT64' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'NC_USHORT': netCDF2/3/4 and HDF4/5 Support.
(line 636)
* 'NC_USHORT' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
+ (line 9959)
* 'nc__enddef()': Metadata Optimization.
- (line 1483)
+ (line 1504)
* ndims(): Methods and functions.
- (line 6339)
+ (line 6362)
* NEARBYINT: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* nearest integer function (exact): Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* nearest integer function (inexact): Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* NEC: Compatability. (line 384)
* Neil Davis: Automatic type conversion.
- (line 4830)
+ (line 4855)
* nesting: Syntax of ncap2 statements.
- (line 5569)
+ (line 5594)
* netCDF: Availability. (line 330)
* netCDF2: netCDF2/3/4 and HDF4/5 Support.
(line 585)
* netCDF2 <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* 'NETCDF2_ONLY': netCDF2/3/4 and HDF4/5 Support.
(line 606)
* netCDF3: netCDF2/3/4 and HDF4/5 Support.
(line 585)
* netCDF3 <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* netCDF3 classic file format: Determining File Format.
- (line 2154)
+ (line 2175)
* netCDF4: netCDF2/3/4 and HDF4/5 Support.
(line 611)
* netCDF4 <1>: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* netCDF4 <2>: Multiple Record Dimensions.
- (line 3876)
+ (line 3901)
* netCDF4 classic file format: Determining File Format.
- (line 2154)
+ (line 2175)
* netCDF4 file format: Determining File Format.
- (line 2154)
+ (line 2175)
* 'NETCDF4' files: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* 'NETCDF4_CLASSIC' files: File Formats and Conversion.
- (line 2068)
+ (line 2089)
* 'NETCDF4_ROOT': netCDF2/3/4 and HDF4/5 Support.
- (line 733)
-* Nick Bower: Contributors. (line 10840)
+ (line 751)
+* Nick Bower: Contributors. (line 10885)
* 'NINTAP': Specifying Input Files.
- (line 1641)
+ (line 1662)
* 'NINTAP' <1>: ncra netCDF Record Averager.
- (line 10223)
+ (line 10268)
* 'NINTAP' <2>: ncrcat netCDF Record Concatenator.
- (line 10301)
-* non-coordinate grid properties: CF Conventions. (line 5337)
-* non-rectangular grids: Irregular grids. (line 6822)
-* non-standard grids: Irregular grids. (line 6822)
+ (line 10346)
+* non-coordinate grid properties: CF Conventions. (line 5362)
+* non-rectangular grids: Irregular grids. (line 6845)
+* non-standard grids: Irregular grids. (line 6845)
* normalization: Normalization and Integration.
- (line 10631)
+ (line 10676)
* Not-a-Number: ncatted netCDF Attribute Editor.
- (line 8352)
+ (line 8375)
* 'NO_NETCDF_2': netCDF2/3/4 and HDF4/5 Support.
(line 595)
* NRA: Proposals for Institutional Funding.
- (line 10873)
-* 'nrnet': Remote storage. (line 1814)
+ (line 10918)
+* 'nrnet': Remote storage. (line 1835)
* NSF: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* NSF <1>: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* NT (Microsoft operating system): Windows Operating System.
(line 483)
* NUL: ncatted netCDF Attribute Editor.
- (line 8330)
+ (line 8353)
* 'NUL': ncpdq netCDF Permute Dimensions Quickly.
- (line 9952)
+ (line 9997)
* NUL-termination: ncatted netCDF Attribute Editor.
- (line 8330)
+ (line 8353)
* null operation: ncflint netCDF File Interpolator.
- (line 9133)
-* number literals 'ncap2': Number literals. (line 6050)
+ (line 9156)
+* number literals 'ncap2': Number literals. (line 6073)
* 'number_miss()': Missing values ncap2.
- (line 6246)
+ (line 6269)
* 'numerator': Normalization and Integration.
- (line 10631)
-* NVODS: OPeNDAP. (line 1990)
+ (line 10676)
+* NVODS: OPeNDAP. (line 2011)
* 'nxt_lsr': ncpdq netCDF Permute Dimensions Quickly.
- (line 9914)
-* oceanography: OPeNDAP. (line 1888)
+ (line 9959)
+* oceanography: OPeNDAP. (line 1909)
* octal dump: Determining File Format.
- (line 2197)
+ (line 2218)
* 'od': Determining File Format.
- (line 2197)
-* 'OMP_NUM_THREADS': OpenMP Threading. (line 1530)
+ (line 2218)
+* 'OMP_NUM_THREADS': OpenMP Threading. (line 1551)
* on-line documentation: Availability. (line 310)
* open source: Foreword. (line 222)
-* open source <1>: OPeNDAP. (line 1990)
+* open source <1>: OPeNDAP. (line 2011)
* Open-source Project for a Network Data Access Protocol: OPeNDAP.
- (line 1888)
-* OPeNDAP.: OPeNDAP. (line 1888)
+ (line 1909)
+* OPeNDAP.: OPeNDAP. (line 1909)
* OpenMP: Memory Requirements.
- (line 1320)
+ (line 1341)
* OpenMP <1>: Single and Multi-file Operators.
- (line 1395)
-* OpenMP <2>: OpenMP Threading. (line 1504)
-* operation types: Operation Types. (line 4585)
+ (line 1416)
+* OpenMP <2>: OpenMP Threading. (line 1525)
+* operation types: Operation Types. (line 4610)
* operation types <1>: ncra netCDF Record Averager.
- (line 10216)
+ (line 10261)
* operation types <2>: ncwa netCDF Weighted Averager.
- (line 10584)
+ (line 10629)
* operator speed: Libraries. (line 561)
* operator speed <1>: Temporary Output Files.
- (line 922)
-* operator speed <2>: Performance. (line 1441)
+ (line 943)
+* operator speed <2>: Performance. (line 1462)
* operator speed <3>: Metadata Optimization.
- (line 1483)
-* operator speed <4>: Missing Values. (line 3973)
+ (line 1504)
+* operator speed <4>: Missing Values. (line 3998)
* operator speed <5>: ncrename netCDF Renamer.
- (line 10382)
+ (line 10427)
* operators: Summary. (line 285)
* OptIPuter: Proposals for Institutional Funding.
- (line 10866)
-* Orion Powlawski: Contributors. (line 10842)
-* 'ORO': CF Conventions. (line 5306)
+ (line 10911)
+* Orion Powlawski: Contributors. (line 10887)
+* 'ORO': CF Conventions. (line 5331)
* 'ORO' <1>: Normalization and Integration.
- (line 10705)
+ (line 10750)
+* orphan dimensions: ncks netCDF Kitchen Sink.
+ (line 9534)
* OS: Compatability. (line 384)
* output file: Large Numbers of Files.
- (line 1226)
+ (line 1247)
* output file <1>: Specifying Output Files.
- (line 1744)
-* OUTPUT-PATH: Remote storage. (line 1837)
-* overview: Performance. (line 1426)
+ (line 1765)
+* OUTPUT-PATH: Remote storage. (line 1858)
+* overview: Performance. (line 1447)
* overwriting files: Temporary Output Files.
- (line 970)
-* overwriting files <1>: Batch Mode. (line 5227)
+ (line 991)
+* overwriting files <1>: Batch Mode. (line 5252)
* pack(): Methods and functions.
- (line 6321)
-* 'pack(x)': Packed data. (line 4448)
-* packing: OPeNDAP. (line 1952)
-* packing <1>: Chunking. (line 4050)
-* packing <2>: Packed data. (line 4448)
+ (line 6344)
+* 'pack(x)': Packed data. (line 4473)
+* packing: OPeNDAP. (line 1973)
+* packing <1>: Chunking. (line 4075)
+* packing <2>: Packed data. (line 4473)
* packing <3>: ncecat netCDF Ensemble Concatenator.
- (line 8956)
+ (line 8979)
* packing <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* packing <5>: ncrcat netCDF Record Concatenator.
- (line 10282)
+ (line 10327)
* packing map: ncpdq netCDF Permute Dimensions Quickly.
- (line 9908)
+ (line 9953)
* packing policy: ncpdq netCDF Permute Dimensions Quickly.
- (line 9833)
+ (line 9878)
* pack_byte(): Methods and functions.
- (line 6324)
+ (line 6347)
* pack_int(): Methods and functions.
- (line 6328)
+ (line 6351)
* pack_short(): Methods and functions.
- (line 6326)
-* papers: Performance. (line 1426)
-* 'parallel': Parallel. (line 12029)
-* parallelism: OpenMP Threading. (line 1504)
+ (line 6349)
+* papers: Performance. (line 1447)
+* 'parallel': Parallel. (line 12074)
+* parallelism: OpenMP Threading. (line 1525)
* parallelism <1>: Proposals for Institutional Funding.
- (line 10868)
+ (line 10913)
* parser: ncap2 netCDF Arithmetic Processor.
- (line 5489)
+ (line 5514)
* pasting variables: Appending Variables.
- (line 995)
+ (line 1016)
* 'pathcc': Compatability. (line 402)
* 'pathCC': Compatability. (line 402)
* PathScale: Compatability. (line 384)
-* Patrice Dumas: Contributors. (line 10842)
-* Patrick Kursawe: Contributors. (line 10844)
+* Patrice Dumas: Contributors. (line 10887)
+* Patrick Kursawe: Contributors. (line 10889)
* pattern matching: Large Numbers of Files.
- (line 1208)
-* pattern matching <1>: Subsetting Files. (line 2493)
+ (line 1229)
+* pattern matching <1>: Subsetting Files. (line 2514)
* pattern matching <2>: ncatted netCDF Attribute Editor.
- (line 8182)
+ (line 8205)
* pattern matching <3>: ncatted netCDF Attribute Editor.
- (line 8389)
-* PayPal: Contributing. (line 10767)
+ (line 8412)
+* PayPal: Contributing. (line 10812)
* PCK_MAP: ncpdq netCDF Permute Dimensions Quickly.
- (line 9908)
+ (line 9953)
* PCK_PLC: ncpdq netCDF Permute Dimensions Quickly.
- (line 9841)
+ (line 9886)
* peak memory usage: Memory Requirements.
- (line 1313)
-* peak memory usage <1>: RAM disks. (line 4361)
-* Pedro Vicente: Contributors. (line 10816)
+ (line 1334)
+* peak memory usage <1>: RAM disks. (line 4386)
+* Pedro Vicente: Contributors. (line 10861)
* performance: Libraries. (line 561)
* performance <1>: Temporary Output Files.
- (line 922)
-* performance <2>: Performance. (line 1432)
-* performance <3>: Performance. (line 1441)
+ (line 943)
+* performance <2>: Performance. (line 1453)
+* performance <3>: Performance. (line 1462)
* performance <4>: Metadata Optimization.
- (line 1483)
-* performance <5>: Missing Values. (line 3973)
+ (line 1504)
+* performance <5>: Missing Values. (line 3998)
* performance <6>: ncrename netCDF Renamer.
- (line 10382)
-* Perl: Philosophy. (line 879)
+ (line 10427)
+* Perl: Philosophy. (line 900)
* Perl <1>: Large Numbers of Files.
- (line 1239)
+ (line 1260)
* Perl <2>: ncatted netCDF Attribute Editor.
- (line 8304)
+ (line 8327)
* permute dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* permute(): Arrays and hyperslabs.
- (line 5971)
-* Peter Campbell: Contributors. (line 10838)
+ (line 5996)
+* Peter Campbell: Contributors. (line 10883)
* 'pgcc': Compatability. (line 402)
* 'pgCC': Compatability. (line 402)
* PGI: Compatability. (line 384)
-* philosophy: Philosophy. (line 870)
+* philosophy: Philosophy. (line 891)
* pipes: Large Numbers of Files.
- (line 1221)
-* 'plc_all': Chunking. (line 4060)
-* 'plc_g2d': Chunking. (line 4060)
-* 'plc_g3d': Chunking. (line 4060)
-* 'plc_xpl': Chunking. (line 4060)
-* 'plc_xst': Chunking. (line 4060)
+ (line 1242)
+* 'plc_all': Chunking. (line 4085)
+* 'plc_g2d': Chunking. (line 4085)
+* 'plc_g3d': Chunking. (line 4085)
+* 'plc_xpl': Chunking. (line 4085)
+* 'plc_xst': Chunking. (line 4085)
* portability: Compatability. (line 384)
* positional arguments: Specifying Output Files.
- (line 1744)
+ (line 1765)
* POSIX: Command Line Options.
- (line 1569)
-* POSIX <1>: Subsetting Files. (line 2511)
+ (line 1590)
+* POSIX <1>: Subsetting Files. (line 2532)
* POW: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* power: Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* power function: Intrinsic mathematical methods.
- (line 7906)
-* 'prd': Chunking. (line 4110)
+ (line 7929)
+* 'prd': Chunking. (line 4135)
* precision: Intrinsic mathematical methods.
- (line 8009)
+ (line 8032)
* preprocessor tokens: Windows Operating System.
(line 498)
* presentations: Availability. (line 320)
-* print() 'ncap2': print statement. (line 6167)
+* print() 'ncap2': print statement. (line 6190)
* 'printf': Compatability. (line 415)
* 'printf()': ncatted netCDF Attribute Editor.
- (line 8306)
+ (line 8329)
* 'printf()' <1>: ncks netCDF Kitchen Sink.
- (line 9500)
+ (line 9545)
* 'printf()' <2>: Filters for 'ncks'.
- (line 9720)
+ (line 9765)
* printing files contents: ncks netCDF Kitchen Sink.
- (line 9162)
+ (line 9185)
* printing variables: ncks netCDF Kitchen Sink.
- (line 9162)
+ (line 9185)
* Processor: ncra netCDF Record Averager.
- (line 10223)
+ (line 10268)
* Processor <1>: ncrcat netCDF Record Concatenator.
- (line 10301)
+ (line 10346)
* Processor, CCM: Specifying Input Files.
- (line 1641)
-* promotion: Type Conversion. (line 4738)
+ (line 1662)
+* promotion: Type Conversion. (line 4763)
* promotion <1>: Promoting Single-precision to Double.
- (line 4874)
+ (line 4899)
* promotion <2>: Intrinsic mathematical methods.
- (line 7976)
+ (line 7999)
* proposals: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* pseudonym: Symbolic Links. (line 534)
* publications: Availability. (line 320)
* QLogic: Compatability. (line 384)
* Qt: Windows Operating System.
(line 490)
* quadruple-precision: Intrinsic mathematical methods.
- (line 8009)
-* Quick Start: Quick Start. (line 10886)
+ (line 8032)
+* Quick Start: Quick Start. (line 10931)
* quiet: ncks netCDF Kitchen Sink.
- (line 9492)
-* quotes: Subsetting Files. (line 2568)
-* quotes <1>: Examples ncap2. (line 7858)
+ (line 9526)
+* quotes: Subsetting Files. (line 2589)
+* quotes <1>: Examples ncap2. (line 7881)
* quotes <2>: ncbo netCDF Binary Operator.
- (line 8475)
+ (line 8498)
* quotes <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10076)
+ (line 10121)
* RAG: ncecat netCDF Ensemble Concatenator.
- (line 8873)
+ (line 8896)
* RAM: Memory Requirements.
- (line 1313)
-* RAM <1>: RAM disks. (line 4361)
+ (line 1334)
+* RAM <1>: RAM disks. (line 4386)
* RAM disks: Temporary Output Files.
- (line 928)
-* RAM disks <1>: RAM disks. (line 4361)
+ (line 949)
+* RAM disks <1>: RAM disks. (line 4386)
* RAM files: Temporary Output Files.
- (line 928)
-* RAM files <1>: RAM disks. (line 4361)
-* RAM variables: RAM disks. (line 4401)
+ (line 949)
+* RAM files <1>: RAM disks. (line 4386)
+* RAM variables: RAM disks. (line 4426)
* RAM variables <1>: Methods and functions.
- (line 6427)
-* ram_delete(): RAM variables. (line 6439)
-* ram_write(): RAM variables. (line 6439)
+ (line 6450)
+* ram_delete(): RAM variables. (line 6462)
+* ram_write(): RAM variables. (line 6462)
* random walk: Promoting Single-precision to Double.
- (line 5091)
-* rank: Expressions. (line 5610)
+ (line 5116)
+* rank: Expressions. (line 5635)
* rank <1>: ncbo netCDF Binary Operator.
- (line 8516)
+ (line 8539)
* rank <2>: ncbo netCDF Binary Operator.
- (line 8529)
+ (line 8552)
* rank <3>: ncbo netCDF Binary Operator.
- (line 8579)
+ (line 8602)
* rank <4>: ncwa netCDF Weighted Averager.
- (line 10549)
+ (line 10594)
* 'rcp': Windows Operating System.
(line 504)
-* 'rcp' <1>: Remote storage. (line 1776)
-* RCS: Operator Version. (line 5457)
-* 'rd1': Chunking. (line 4110)
+* 'rcp' <1>: Remote storage. (line 1797)
+* RCS: Operator Version. (line 5482)
+* 'rd1': Chunking. (line 4135)
* re-dimension: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* re-order dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* record aggregation: ncecat netCDF Ensemble Concatenator.
- (line 8873)
-* record append: Record Appending. (line 3238)
+ (line 8896)
+* record append: Record Appending. (line 3263)
* record average: ncra netCDF Record Averager.
- (line 10183)
+ (line 10228)
* record concatenation: ncrcat netCDF Record Concatenator.
- (line 10254)
+ (line 10299)
* record dimension: Appending Variables.
- (line 998)
+ (line 1019)
* record dimension <1>: C and Fortran Index Conventions.
- (line 3054)
-* record dimension <2>: Chunking. (line 4207)
+ (line 3079)
+* record dimension <2>: Chunking. (line 4232)
* record dimension <3>: nces netCDF Ensemble Statistics.
- (line 8728)
+ (line 8751)
* record dimension <4>: ncecat netCDF Ensemble Concatenator.
- (line 8883)
+ (line 8906)
* record dimension <5>: ncecat netCDF Ensemble Concatenator.
- (line 8887)
+ (line 8910)
* record dimension <6>: ncecat netCDF Ensemble Concatenator.
- (line 8993)
+ (line 9016)
* record dimension <7>: ncks netCDF Kitchen Sink.
- (line 9286)
+ (line 9320)
* record dimension <8>: ncks netCDF Kitchen Sink.
- (line 9363)
+ (line 9397)
* record dimension <9>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9980)
+ (line 10025)
* record dimension <10>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9982)
+ (line 10027)
* record dimension <11>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10131)
+ (line 10176)
* record dimension <12>: ncra netCDF Record Averager.
- (line 10183)
+ (line 10228)
* record dimension <13>: ncra netCDF Record Averager.
- (line 10196)
+ (line 10241)
* record dimension <14>: ncrcat netCDF Record Concatenator.
- (line 10267)
+ (line 10312)
* record variable: C and Fortran Index Conventions.
- (line 3049)
+ (line 3074)
* record variable <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9984)
-* rectangular grids: Irregular grids. (line 6822)
-* recursion: Subsetting Files. (line 2392)
-* recursive: Subsetting Files. (line 2392)
-* 'regex': Subsetting Files. (line 2511)
+ (line 10029)
+* rectangular grids: Irregular grids. (line 6845)
+* recursion: Subsetting Files. (line 2413)
+* recursive: Subsetting Files. (line 2413)
+* 'regex': Subsetting Files. (line 2532)
* regression: Annual Average over Regions.
- (line 11342)
+ (line 11387)
* regressions archive: Help Requests and Bug Reports.
- (line 858)
-* regrid: Regrid MODIS Data. (line 11797)
+ (line 879)
+* regrid: Regrid MODIS Data. (line 11842)
* regular expressions: Large Numbers of Files.
- (line 1208)
+ (line 1229)
* regular expressions <1>: Specifying Input Files.
- (line 1641)
-* regular expressions <2>: Subsetting Files. (line 2493)
-* regular expressions <3>: Examples ncap2. (line 7858)
+ (line 1662)
+* regular expressions <2>: Subsetting Files. (line 2514)
+* regular expressions <3>: Examples ncap2. (line 7881)
* regular expressions <4>: ncatted netCDF Attribute Editor.
- (line 8182)
+ (line 8205)
* regular expressions <5>: ncatted netCDF Attribute Editor.
- (line 8389)
-* 'remap': Sort methods. (line 6577)
-* Remik Ziemlinski: Contributors. (line 10838)
+ (line 8412)
+* 'remap': Sort methods. (line 6600)
+* Remik Ziemlinski: Contributors. (line 10883)
* remote files: Windows Operating System.
(line 504)
-* remote files <1>: Remote storage. (line 1776)
+* remote files <1>: Remote storage. (line 1797)
* rename groups: Group Path Editing.
- (line 2744)
+ (line 2765)
* renaming attributes: ncrename netCDF Renamer.
- (line 10336)
-* renaming attributes <1>: Regrid MODIS Data. (line 11797)
+ (line 10381)
+* renaming attributes <1>: Regrid MODIS Data. (line 11842)
* renaming dimensions: ncrename netCDF Renamer.
- (line 10336)
-* renaming dimensions <1>: Regrid MODIS Data. (line 11797)
+ (line 10381)
+* renaming dimensions <1>: Regrid MODIS Data. (line 11842)
* renaming groups: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* renaming variables: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* renaming variables <1>: Annual Average over Regions.
- (line 11342)
-* renaming variables <2>: Regrid MODIS Data. (line 11797)
+ (line 11387)
+* renaming variables <2>: Regrid MODIS Data. (line 11842)
* reporting bugs: Help Requests and Bug Reports.
- (line 788)
+ (line 809)
* reshape variables: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* 'restrict': Compatability. (line 439)
* reverse data: ncpdq netCDF Permute Dimensions Quickly.
- (line 10106)
+ (line 10151)
* reverse dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* reverse dimensions <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10063)
+ (line 10108)
* reverse dimensions <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10085)
+ (line 10130)
* reverse(): Arrays and hyperslabs.
- (line 5964)
-* 'rew': Chunking. (line 4110)
+ (line 5989)
+* 'rew': Chunking. (line 4135)
* RINT: Intrinsic mathematical methods.
- (line 7906)
-* 'rms': Operation Types. (line 4585)
-* 'rmssdn': Operation Types. (line 4585)
+ (line 7929)
+* 'rms': Operation Types. (line 4610)
+* 'rmssdn': Operation Types. (line 4610)
* rmssdn(): Methods and functions.
- (line 6309)
-* root-mean-square: Operation Types. (line 4585)
-* Rorik Peterson: Contributors. (line 10807)
+ (line 6332)
+* root-mean-square: Operation Types. (line 4610)
+* Rorik Peterson: Contributors. (line 10852)
* ROUND: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* rounding: Promoting Single-precision to Double.
- (line 5091)
+ (line 5116)
* rounding functions: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* RPM: netCDF2/3/4 and HDF4/5 Support.
- (line 728)
+ (line 746)
* running average: ncra netCDF Record Averager.
- (line 10183)
-* Russ Rew: Contributors. (line 10786)
-* Russ Rew <1>: Contributors. (line 10818)
+ (line 10228)
+* Russ Rew: Contributors. (line 10831)
+* Russ Rew <1>: Contributors. (line 10863)
* safeguards: Temporary Output Files.
- (line 907)
+ (line 928)
* safeguards <1>: ncrename netCDF Renamer.
- (line 10367)
-* 'scale_factor': Packed data. (line 4448)
+ (line 10412)
+* 'scale_factor': Packed data. (line 4473)
* 'scale_factor' <1>: ncecat netCDF Ensemble Concatenator.
- (line 8956)
+ (line 8979)
* 'scale_factor' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9834)
+ (line 9879)
* 'scale_factor' <3>: ncrcat netCDF Record Concatenator.
- (line 10282)
-* SCALE_FORMAT: Performance. (line 1449)
-* scaling: Performance. (line 1432)
+ (line 10327)
+* SCALE_FORMAT: Performance. (line 1470)
+* scaling: Performance. (line 1453)
* scaling <1>: ncflint netCDF File Interpolator.
- (line 9136)
+ (line 9159)
* Scientific Data Operators: Proposals for Institutional Funding.
- (line 10866)
-* 'scl': Chunking. (line 4110)
-* Scott Capps: Contributors. (line 10836)
+ (line 10911)
+* 'scl': Chunking. (line 4135)
+* Scott Capps: Contributors. (line 10881)
* 'scp': Windows Operating System.
(line 504)
-* 'scp' <1>: Remote storage. (line 1776)
+* 'scp' <1>: Remote storage. (line 1797)
* script file: ncap2 netCDF Arithmetic Processor.
- (line 5507)
+ (line 5532)
* SDO: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* seasonal average: Monthly data in one file.
- (line 10930)
-* security: MD5 digests. (line 4260)
+ (line 10975)
+* security: MD5 digests. (line 4285)
* SEIII: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* semi-colon: Syntax of ncap2 statements.
- (line 5564)
+ (line 5589)
* separator: ncks netCDF Kitchen Sink.
- (line 9538)
-* server: Large Datasets. (line 1287)
-* server <1>: OPeNDAP. (line 1888)
+ (line 9583)
+* server: Large Datasets. (line 1308)
+* server <1>: OPeNDAP. (line 1909)
* server <2>: Retaining Retrieved Files.
- (line 2048)
+ (line 2069)
* server <3>: Retaining Retrieved Files.
- (line 2056)
+ (line 2077)
* Server-Side Distributed Data Reduction & Analysis: Proposals for Institutional Funding.
- (line 10866)
-* server-side processing: OPeNDAP. (line 2014)
+ (line 10911)
+* server-side processing: OPeNDAP. (line 2035)
* server-side processing <1>: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* 'set_miss()': Missing values ncap2.
- (line 6224)
+ (line 6247)
* 'sftp': Windows Operating System.
(line 504)
-* 'sftp' <1>: Remote storage. (line 1776)
+* 'sftp' <1>: Remote storage. (line 1797)
* SGI: Compatability. (line 384)
* Sh shell: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* shared memory machines: Memory Requirements.
- (line 1320)
-* shared memory parallelism: OpenMP Threading. (line 1504)
+ (line 1341)
+* shared memory parallelism: OpenMP Threading. (line 1525)
* shell: Large Numbers of Files.
- (line 1208)
-* shell <1>: Subsetting Files. (line 2568)
-* shell <2>: UDUnits Support. (line 3740)
-* shell <3>: Examples ncap2. (line 7858)
+ (line 1229)
+* shell <1>: Subsetting Files. (line 2589)
+* shell <2>: UDUnits Support. (line 3765)
+* shell <3>: Examples ncap2. (line 7881)
* shell <4>: ncbo netCDF Binary Operator.
- (line 8475)
+ (line 8498)
* shell <5>: Filters for 'ncks'.
- (line 9592)
-* SIGNEDNESS: Performance. (line 1449)
+ (line 9637)
+* SIGNEDNESS: Performance. (line 1470)
* SIN: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* sine function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* single-precision: Intrinsic mathematical methods.
- (line 8009)
+ (line 8032)
* SINH: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* size(): Methods and functions.
- (line 6337)
-* SMP: OpenMP Threading. (line 1504)
-* 'sort': Sort methods. (line 6577)
+ (line 6360)
+* SMP: OpenMP Threading. (line 1525)
+* 'sort': Sort methods. (line 6600)
* sort alphabetically: ncks netCDF Kitchen Sink.
- (line 9271)
+ (line 9294)
* sort alphabetically <1>: Filters for 'ncks'.
- (line 9687)
+ (line 9732)
* source code: Availability. (line 302)
* spatial distribution: Global Distribution of Long-term Average.
- (line 11239)
+ (line 11284)
* special attributes: ncks netCDF Kitchen Sink.
- (line 9311)
+ (line 9345)
* special characters: ncatted netCDF Attribute Editor.
- (line 8321)
+ (line 8344)
* speed: Libraries. (line 561)
* speed <1>: Temporary Output Files.
- (line 922)
-* speed <2>: Large Datasets. (line 1296)
-* speed <3>: Performance. (line 1441)
+ (line 943)
+* speed <2>: Large Datasets. (line 1317)
+* speed <3>: Performance. (line 1462)
* speed <4>: Metadata Optimization.
- (line 1483)
-* speed <5>: Missing Values. (line 3973)
+ (line 1504)
+* speed <5>: Missing Values. (line 3998)
* speed <6>: ncrename netCDF Renamer.
- (line 10382)
-* 'sqravg': Operation Types. (line 4585)
+ (line 10427)
+* 'sqravg': Operation Types. (line 4610)
* sqravg(): Methods and functions.
- (line 6299)
-* 'sqrt': Operation Types. (line 4585)
+ (line 6322)
+* 'sqrt': Operation Types. (line 4610)
* SQRT: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* square root function: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* SSDDRA: Proposals for Institutional Funding.
- (line 10866)
+ (line 10911)
* SSH: Windows Operating System.
(line 504)
* SSH <1>: Retaining Retrieved Files.
- (line 2045)
+ (line 2066)
* sshort(): Methods and functions.
- (line 6393)
-* standard deviation: Operation Types. (line 4585)
-* standard deviation <1>: Operation Types. (line 4665)
+ (line 6416)
+* standard deviation: Operation Types. (line 4610)
+* standard deviation <1>: Operation Types. (line 4690)
* standard deviation <2>: Annual Average over Regions.
- (line 11342)
+ (line 11387)
* standard input: Large Numbers of Files.
- (line 1191)
+ (line 1212)
* standard input <1>: nces netCDF Ensemble Statistics.
- (line 8763)
+ (line 8786)
* standard input <2>: ncecat netCDF Ensemble Concatenator.
- (line 8929)
+ (line 8952)
* standard input <3>: ncra netCDF Record Averager.
- (line 10200)
+ (line 10245)
* standard input <4>: ncrcat netCDF Record Concatenator.
- (line 10270)
+ (line 10315)
* 'standard_name': Auxiliary Coordinates.
- (line 3559)
-* 'stat() system call': Buffer sizes. (line 4330)
+ (line 3584)
+* 'stat() system call': Buffer sizes. (line 4355)
* statement: Syntax of ncap2 statements.
- (line 5550)
+ (line 5575)
* static linking: Libraries. (line 560)
* 'stdin': Large Numbers of Files.
- (line 1191)
+ (line 1212)
* 'stdin' <1>: File List Attributes.
- (line 5275)
+ (line 5300)
* 'stdin' <2>: nces netCDF Ensemble Statistics.
- (line 8763)
+ (line 8786)
* 'stdin' <3>: ncecat netCDF Ensemble Concatenator.
- (line 8929)
+ (line 8952)
* 'stdin' <4>: ncra netCDF Record Averager.
- (line 10200)
+ (line 10245)
* 'stdin' <5>: ncrcat netCDF Record Concatenator.
- (line 10270)
-* Steve Emmerson: Contributors. (line 10786)
-* stride: Hyperslabs. (line 3098)
-* stride <1>: Stride. (line 3177)
-* stride <2>: Multislabs. (line 3404)
-* stride <3>: UDUnits Support. (line 3731)
+ (line 10315)
+* Steve Emmerson: Contributors. (line 10831)
+* stride: Hyperslabs. (line 3123)
+* stride <1>: Stride. (line 3202)
+* stride <2>: Multislabs. (line 3429)
+* stride <3>: UDUnits Support. (line 3756)
* stride <4>: ncra netCDF Record Averager.
- (line 10208)
+ (line 10253)
* stride <5>: ncra netCDF Record Averager.
- (line 10239)
+ (line 10284)
* stride <6>: ncrcat netCDF Record Concatenator.
- (line 10278)
+ (line 10323)
* stride <7>: ncrcat netCDF Record Concatenator.
- (line 10319)
+ (line 10364)
* strings: ncatted netCDF Attribute Editor.
- (line 8330)
-* Stu Muller: Contributors. (line 10838)
-* stub: Remote storage. (line 1846)
-* sub-cycle: Subcycle. (line 3289)
-* subcycle: Subcycle. (line 3289)
-* subsetting: Subsetting Files. (line 2350)
+ (line 8353)
+* Stu Muller: Contributors. (line 10883)
+* stub: Remote storage. (line 1867)
+* sub-cycle: Subcycle. (line 3314)
+* subcycle: Subcycle. (line 3314)
+* subsetting: Subsetting Files. (line 2371)
* subsetting <1>: Subsetting Coordinate Variables.
- (line 2593)
-* subsetting <2>: CF Conventions. (line 5372)
+ (line 2614)
+* subsetting <2>: CF Conventions. (line 5397)
* subsetting <3>: Filters for 'ncks'.
- (line 9693)
+ (line 9738)
* subsetting <4>: Filters for 'ncks'.
- (line 9767)
+ (line 9812)
* 'subtract': ncbo netCDF Binary Operator.
- (line 8445)
+ (line 8468)
* subtracting data: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* subtraction: Intrinsic mathematical methods.
- (line 7903)
+ (line 7926)
* subtraction <1>: ncbo netCDF Binary Operator.
- (line 8427)
+ (line 8450)
* summary: Summary. (line 285)
* Sun: Compatability. (line 384)
-* swap space: Large Datasets. (line 1274)
+* swap space: Large Datasets. (line 1295)
* swap space <1>: Memory Requirements.
- (line 1313)
-* swap space <2>: RAM disks. (line 4361)
+ (line 1334)
+* swap space <2>: RAM disks. (line 4386)
* switches: Command Line Options.
- (line 1569)
+ (line 1590)
* symbolic links: Symbolic Links. (line 524)
* symbolic links <1>: Statistics vs. Concatenation.
- (line 1051)
+ (line 1072)
* symbolic links <2>: Large Numbers of Files.
- (line 1233)
+ (line 1254)
* symbolic links <3>: ncbo netCDF Binary Operator.
- (line 8489)
+ (line 8512)
* symbolic links <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9902)
-* synchronous file access: Remote storage. (line 1776)
+ (line 9947)
+* synchronous file access: Remote storage. (line 1797)
* synonym: Symbolic Links. (line 534)
* syntax: Syntax of ncap2 statements.
- (line 5550)
-* System calls: Buffer sizes. (line 4330)
-* Takeshi Enomoto: Contributors. (line 10848)
+ (line 5575)
+* System calls: Buffer sizes. (line 4355)
+* Takeshi Enomoto: Contributors. (line 10893)
* TAN: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* TANH: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* temporary files: Temporary Output Files.
- (line 907)
-* temporary files <1>: RAM disks. (line 4441)
+ (line 928)
+* temporary files <1>: RAM disks. (line 4466)
* temporary output files: Temporary Output Files.
- (line 907)
-* temporary output files <1>: RAM disks. (line 4441)
+ (line 928)
+* temporary output files <1>: RAM disks. (line 4466)
* temporary output files <2>: ncrename netCDF Renamer.
- (line 10367)
+ (line 10412)
* TeXinfo: Availability. (line 310)
* threads: Memory Requirements.
- (line 1320)
+ (line 1341)
* threads <1>: Single and Multi-file Operators.
- (line 1395)
-* threads <2>: OpenMP Threading. (line 1504)
-* THR_NBR: OpenMP Threading. (line 1530)
-* 'time': UDUnits Support. (line 3722)
-* 'time' <1>: ARM Conventions. (line 5426)
-* time-averaging: Examples ncap2. (line 7881)
+ (line 1416)
+* threads <2>: OpenMP Threading. (line 1525)
+* THR_NBR: OpenMP Threading. (line 1551)
+* 'time': UDUnits Support. (line 3747)
+* 'time' <1>: ARM Conventions. (line 5451)
+* time-averaging: Examples ncap2. (line 7904)
* time-averaging <1>: Daily data in one file.
- (line 10896)
+ (line 10941)
* time-averaging <2>: Daily data in one file.
- (line 10910)
+ (line 10955)
* time-averaging <3>: Monthly data in one file.
- (line 10930)
+ (line 10975)
* time-averaging <4>: Monthly data in one file.
- (line 10933)
+ (line 10978)
* time-averaging <5>: One time point one file.
- (line 10959)
+ (line 11004)
* time-averaging <6>: Global Distribution of Long-term Average.
- (line 11239)
+ (line 11284)
* time-averaging <7>: Annual Average over Regions.
- (line 11342)
-* time-averaging <8>: Monthly Cycle. (line 11633)
-* timestamp: History Attribute. (line 5247)
-* 'time_offset': ARM Conventions. (line 5426)
-* total: Operation Types. (line 4585)
+ (line 11387)
+* time-averaging <8>: Monthly Cycle. (line 11678)
+* timestamp: History Attribute. (line 5272)
+* 'time_offset': ARM Conventions. (line 5451)
+* total: Operation Types. (line 4610)
* transpose: C and Fortran Index Conventions.
- (line 3047)
+ (line 3072)
* transpose <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9994)
+ (line 10039)
* TREFHT: Promoting Single-precision to Double.
- (line 5025)
+ (line 5050)
* TRUNC: Intrinsic mathematical methods.
- (line 7906)
+ (line 7929)
* 'trunc()': Automatic type conversion.
- (line 4817)
+ (line 4842)
* truncate (groups): Group Path Editing.
- (line 2656)
+ (line 2677)
* truncation function: Intrinsic mathematical methods.
- (line 7906)
-* truth condition: Mask condition. (line 10602)
+ (line 7929)
+* truth condition: Mask condition. (line 10647)
* truth condition <1>: Normalization and Integration.
- (line 10733)
-* 'ttl': Operation Types. (line 4585)
+ (line 10778)
+* 'ttl': Operation Types. (line 4610)
* ttl(): Methods and functions.
- (line 6311)
-* type conversion: Type Conversion. (line 4732)
+ (line 6334)
+* type conversion: Type Conversion. (line 4757)
* type(): Methods and functions.
- (line 6341)
+ (line 6364)
* ubyte(): Methods and functions.
- (line 6404)
+ (line 6427)
* UDUnits: Compatability. (line 393)
-* UDUnits <1>: UDUnits Support. (line 3669)
-* UDUnits <2>: CF Conventions. (line 5306)
+* UDUnits <1>: UDUnits Support. (line 3694)
+* UDUnits <2>: CF Conventions. (line 5331)
* uint(): Methods and functions.
- (line 6408)
-* 'ulimit': Large Datasets. (line 1292)
-* unary operations: Memory for ncap2. (line 1402)
+ (line 6431)
+* 'ulimit': Large Datasets. (line 1313)
+* unary operations: Memory for ncap2. (line 1423)
* underlying file format: Determining File Format.
- (line 2163)
-* UNICOS: Large Datasets. (line 1287)
+ (line 2184)
+* UNICOS: Large Datasets. (line 1308)
* Unidata: Compatability. (line 393)
* Unidata <1>: netCDF2/3/4 and HDF4/5 Support.
(line 611)
-* Unidata <2>: UDUnits Support. (line 3669)
-* union: Subsetting Files. (line 2350)
-* union <1>: Subsetting Files. (line 2441)
+* Unidata <2>: UDUnits Support. (line 3694)
+* union: Subsetting Files. (line 2371)
+* union <1>: Subsetting Files. (line 2462)
* union of files: Appending Variables.
- (line 1017)
+ (line 1038)
* unit64(): Methods and functions.
- (line 6412)
-* 'units': UDUnits Support. (line 3669)
-* 'units' <1>: UDUnits Support. (line 3690)
-* 'units' <2>: UDUnits Support. (line 3722)
+ (line 6435)
+* 'units': UDUnits Support. (line 3694)
+* 'units' <1>: UDUnits Support. (line 3715)
+* 'units' <2>: UDUnits Support. (line 3747)
* 'units' <3>: ncatted netCDF Attribute Editor.
- (line 8378)
+ (line 8401)
* 'units' <4>: ncatted netCDF Attribute Editor.
- (line 8381)
+ (line 8404)
* 'units' <5>: ncflint netCDF File Interpolator.
- (line 9154)
+ (line 9177)
* UNIX: Compatability. (line 393)
* UNIX <1>: Windows Operating System.
(line 502)
* UNIX <2>: Large Numbers of Files.
- (line 1208)
+ (line 1229)
* UNIX <3>: Command Line Options.
- (line 1569)
+ (line 1590)
* UNIX <4>: Specifying Input Files.
- (line 1647)
+ (line 1668)
* UNIX <5>: Filters for 'ncks'.
- (line 9592)
+ (line 9637)
* unlimited dimension: ncecat netCDF Ensemble Concatenator.
- (line 8883)
-* 'unmap': Sort methods. (line 6577)
+ (line 8906)
+* 'unmap': Sort methods. (line 6600)
* unpack(): Methods and functions.
- (line 6330)
-* 'unpack(x)': Packed data. (line 4448)
-* unpacking: OPeNDAP. (line 1952)
-* unpacking <1>: Packed data. (line 4448)
+ (line 6353)
+* 'unpack(x)': Packed data. (line 4473)
+* unpacking: OPeNDAP. (line 1973)
+* unpacking <1>: Packed data. (line 4473)
* unpacking <2>: ncecat netCDF Ensemble Concatenator.
- (line 8956)
+ (line 8979)
* unpacking <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 9816)
+ (line 9861)
* unpacking <4>: ncrcat netCDF Record Concatenator.
- (line 10282)
-* URL: Remote storage. (line 1776)
+ (line 10327)
+* URL: Remote storage. (line 1797)
* 'User Guide': Availability. (line 310)
* ushort(): Methods and functions.
- (line 6406)
-* value list: Attributes. (line 6006)
+ (line 6429)
+* value list: Attributes. (line 6031)
* variable names: ncrename netCDF Renamer.
- (line 10336)
+ (line 10381)
* variables, appending: Annual Average over Regions.
- (line 11342)
-* variance: Operation Types. (line 4585)
-* version: Operator Version. (line 5457)
+ (line 11387)
+* variance: Operation Types. (line 4610)
+* version: Operator Version. (line 5482)
* Vista (Microsoft operating system): Windows Operating System.
(line 483)
* weighted average: ncwa netCDF Weighted Averager.
- (line 10508)
-* weighted average <1>: Monthly Cycle. (line 11633)
-* Wenshan Wang: Contributors. (line 10858)
-* 'wget': Remote storage. (line 1776)
-* where(): Where statement. (line 6454)
-* while(): Loops. (line 6522)
-* whitespace: UDUnits Support. (line 3731)
+ (line 10553)
+* weighted average <1>: Monthly Cycle. (line 11678)
+* Wenshan Wang: Contributors. (line 10903)
+* 'wget': Remote storage. (line 1797)
+* where(): Where statement. (line 6477)
+* while(): Loops. (line 6545)
+* whitespace: UDUnits Support. (line 3756)
* wildcards: Specifying Input Files.
- (line 1641)
-* wildcards <1>: Subsetting Files. (line 2493)
+ (line 1662)
+* wildcards <1>: Subsetting Files. (line 2514)
* wildcards <2>: ncatted netCDF Attribute Editor.
- (line 8182)
+ (line 8205)
* wildcards <3>: ncatted netCDF Attribute Editor.
- (line 8389)
+ (line 8412)
* 'WIN32': Windows Operating System.
(line 498)
* Windows: Compatability. (line 384)
* Windows <1>: Windows Operating System.
(line 483)
-* wrapped coordinates: Hyperslabs. (line 3149)
+* wrapped coordinates: Hyperslabs. (line 3174)
* wrapped coordinates <1>: Wrapped Coordinates.
- (line 3509)
-* wrapped coordinates <2>: Irregular grids. (line 6851)
+ (line 3534)
+* wrapped coordinates <2>: Irregular grids. (line 6874)
* wrapped coordinates <3>: Filters for 'ncks'.
- (line 9805)
+ (line 9850)
* wrapped filenames: Specifying Input Files.
- (line 1704)
-* WRF: Irregular grids. (line 6909)
+ (line 1725)
+* WRF: Irregular grids. (line 6932)
* WWW documentation: Availability. (line 310)
* 'xargs': Large Numbers of Files.
- (line 1208)
+ (line 1229)
* 'xargs' <1>: Specifying Output Files.
- (line 1761)
+ (line 1782)
* 'xlC': Compatability. (line 402)
* 'xlc': Compatability. (line 402)
* XML: ncks netCDF Kitchen Sink.
- (line 9508)
+ (line 9553)
* XP (Microsoft operating system): Windows Operating System.
(line 483)
-* 'xpl': Chunking. (line 4060)
-* 'xst': Chunking. (line 4060)
-* 'xst' <1>: Chunking. (line 4110)
-* Yorick: Philosophy. (line 879)
-* Yorick <1>: Performance. (line 1452)
+* 'xpl': Chunking. (line 4085)
+* 'xst': Chunking. (line 4085)
+* 'xst' <1>: Chunking. (line 4135)
+* Yorick: Philosophy. (line 900)
+* Yorick <1>: Performance. (line 1473)
diff --git a/doc/nco.xml b/doc/nco.xml
index 7adb8e1..51f45c4 100644
--- a/doc/nco.xml
+++ b/doc/nco.xml
@@ -116,14 +116,14 @@ Octave TeXInfo manual shows clean TeXInfo structure
<setfilename file="nco.info" spaces=" ">nco.info</setfilename>
<!-- c Define edition, date, ... -->
-<set name="nco-edition" line=" nco-edition 4.4.3">4.4.3</set>
-<set name="doc-edition" line=" doc-edition 4.4.3">4.4.3</set>
+<set name="nco-edition" line=" nco-edition 4.4.4">4.4.4</set>
+<set name="doc-edition" line=" doc-edition 4.4.4">4.4.4</set>
<set name="copyright-years" line=" copyright-years 1995--2014">1995--2014</set>
<set name="update-year" line=" update-year 2014">2014</set>
-<set name="update-date" line=" update-date 2 April 2014">2 April 2014</set>
-<set name="update-month" line=" update-month April 2014">April 2014</set>
+<set name="update-date" line=" update-date 20 May 2014">20 May 2014</set>
+<set name="update-month" line=" update-month May 2014">May 2014</set>
-<settitle spaces=" "><acronym><acronymword>NCO</acronymword></acronym> 4.4.3 User Guide</settitle>
+<settitle spaces=" "><acronym><acronymword>NCO</acronymword></acronym> 4.4.4 User Guide</settitle>
<!-- c Uncomment following line to produce guide in smallbook format -->
<!-- c @smallbook -->
@@ -507,8 +507,8 @@ ncflint, ncks, ncra, ncrcat, ncrename, ncwa">
</ignore>
<title spaces=" ">NCO User Guide</title>
<subtitle spaces=" ">A suite of netCDF operators</subtitle>
-<subtitle spaces=" ">Edition 4.4.3, for <acronym><acronymword>NCO</acronymword></acronym> Version 4.4.3</subtitle>
-<subtitle spaces=" ">April 2014</subtitle>
+<subtitle spaces=" ">Edition 4.4.4, for <acronym><acronymword>NCO</acronymword></acronym> Version 4.4.4</subtitle>
+<subtitle spaces=" ">May 2014</subtitle>
<author spaces=" ">by Charlie Zender</author>
<author spaces=" ">Department of Earth System Science</author>
@@ -584,8 +584,8 @@ examples from the field of climate modeling and analysis.
The <acronym><acronymword>NCO</acronymword></acronym> homepage is <uref><urefurl>http://nco.sf.net</urefurl></uref>, and
there is a mirror at <uref><urefurl>http://dust.ess.uci.edu/nco</urefurl></uref>.
</para>
-<para>This documentation is for <acronym><acronymword>NCO</acronymword></acronym> version 4.4.3.
-It was last updated 2 April 2014.
+<para>This documentation is for <acronym><acronymword>NCO</acronymword></acronym> version 4.4.4.
+It was last updated 20 May 2014.
Corrections, additions, and rewrites of this documentation are very
welcome.
</para>
@@ -845,7 +845,7 @@ descriptions of <uref><urefurl>http://nco.sf.net/#bug</urefurl><urefdesc spaces=
are on our homepage
(<uref><urefurl>http://nco.sf.net/</urefurl></uref>).
</para>
-<para>There are twelve operators in the current version (4.4.3).
+<para>There are twelve operators in the current version (4.4.4).
The function of each is explained in <ref label="Operator-Reference-Manual"><xrefnodename>Operator Reference Manual</xrefnodename><xrefinfoname spaces=" ">Operator Reference Manual</xrefinfoname></ref>.
Many of the tasks that <acronym><acronymword>NCO</acronymword></acronym> can accomplish are described during
the explanation of common <acronym><acronymword>NCO</acronymword></acronym> Features (<pxref label="Common-features"><xrefnodename>Common features</xrefnodename></pxref>).
@@ -1363,8 +1363,8 @@ You must build <acronym><acronymword>NCO</acronymword></acronym> with netCDF4 to
<cindex index="cp" spaces=" "><indexterm index="cp" number="132"><code>NC_UINT</code></indexterm></cindex>
<cindex index="cp" spaces=" "><indexterm index="cp" number="133"><code>NC_INT64</code></indexterm></cindex>
<cindex index="cp" spaces=" "><indexterm index="cp" number="134"><code>NC_UINT64</code></indexterm></cindex>
-<para>The main netCDF4 features that NCO currently supports are the new
-atomic data types, Lempel-Ziv compression (deflation), and chunking.
+<para><acronym><acronymword>NCO</acronymword></acronym> supports many netCDF4 features including atomic data
+types, Lempel-Ziv compression (deflation), chunking, and groups.
The new atomic data types are <code>NC_UBYTE</code>, <code>NC_USHORT</code>,
<code>NC_UINT</code>, <code>NC_INT64</code>, and <code>NC_UINT64</code>.
Eight-byte integer support is an especially useful improvement from
@@ -1419,11 +1419,8 @@ See <ref label="File-Formats-and-Conversion"><xrefnodename>File Formats and Conv
<a name="hdf4"></a> <!&textndash; http://nco.sf.net/nco.html#hdf4 &textndash;>
<a name="HDF4"></a> <!&textndash; http://nco.sf.net/nco.html#HDF4 &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="142"><acronym><acronymword>H4CF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="143"><command>h4tonccf</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="144"><command>ncl_convert2nc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="145"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="146"><samp>--hdf4</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="142"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="143"><samp>--hdf4</samp></indexterm></cindex>
<para>When linked to a netCDF library that was built with <acronym><acronymword>HDF4</acronymword></acronym>
support
<footnote><para>The procedure for doing this is documented at
@@ -1433,12 +1430,12 @@ files and writing them as netCDF3/netCDF4/<acronym><acronymword>HDF5</acronymwor
<acronym><acronymword>NCO</acronymword></acronym> can only write through the netCDF <acronym><acronymword>API</acronymword></acronym>, which
can only write netCDF3/netCDF4/<acronym><acronymword>HDF5</acronymword></acronym> files.
So <acronym><acronymword>NCO</acronymword></acronym> can <emph>read</emph> <acronym><acronymword>HDF4</acronymword></acronym> files, perform
-manipulations and calculations, and then <emph>write</emph> the results in
-netCDF format.
+manipulations and calculations, and then it must <emph>write</emph> the
+results in netCDF format.
</para>
-<para>Full support for these features is forthcoming, yet support as of
-December, 2013 is quite functional.
-For best results install <acronym><acronymword>NCO</acronymword></acronym> versions 4.4.0 or later on top of
+<para><acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>HDF4</acronymword></acronym> has been quite functional since
+December, 2013.
+For best results install <acronym><acronymword>NCO</acronymword></acronym> versions 4.4.0 or later on top of
netCDF versions 4.3.1 or later.
Getting to this point has been an iterative effort where Unidata
improved netCDF library capabilities in response to our requests.
@@ -1457,8 +1454,9 @@ handle <acronym><acronymword>HDF4</acronymword></acronym> files.
In particular, the <samp>--hdf4</samp> switch is obsolete.
Current versions of <acronym><acronymword>NCO</acronymword></acronym> use netCDF to determine automatically
whether the underlying file is <acronym><acronymword>HDF4</acronymword></acronym>, and then take appropriate
-precautions to avoid calls not yet supported by the netCDF4 subset
-<acronym><acronymword>HDF4</acronymword></acronym>.
+precautions to avoid netCDF4 <acronym><acronymword>API</acronymword></acronym> calls that fail when applied
+to <acronym><acronymword>HDF4</acronymword></acronym> files (e.g., <code>nc_inq_var_chunking()</code>,
+<code>nc_inq_var_deflate()</code>).
The <samp>--hdf4</samp> switch is supported (for backwards compatibility) yet
redundant (i.e., does no harm) with current versions of <acronym><acronymword>NCO</acronymword></acronym>
and netCDF.
@@ -1477,6 +1475,7 @@ types, e.g., unsigned bytes, so this procedure is the most typical.
Conversion of <acronym><acronymword>HDF4</acronymword></acronym> to netCDF4 as above suffices when the data
will only be processed by <acronym><acronymword>NCO</acronymword></acronym> and other netCDF4-aware tools.
</para>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="144"><command>ncl_convert2nc</command></indexterm></cindex>
<para>However, many tools are not fully netCDF4-aware, and so conversion to
netCDF3 may be desirable.
Obtaining a netCDF3 file from an <acronym><acronymword>HDF4</acronymword></acronym> is now easy:
@@ -1492,7 +1491,7 @@ ncks --hdf4 -7 fl.hdf fl.nc # HDF4->netCDF4 classic (netCDF 4.3.0-)
even when the <acronym><acronymword>HDF4</acronymword></acronym> file contains netCDF4 atomic types (e.g.,
unsigned bytes, 64-bit integers) because <acronym><acronymword>NCO</acronymword></acronym> can autoconvert
everything to atomic types supported by netCDF3
-<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), we recommend the
+<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), we recommended the
<command>ncl_convert2nc</command> tool to convert <acronym><acronymword>HDF</acronymword></acronym> to netCDF3 when
both these are true: <w>1. You</w> must have netCDF3 and <w>2. the</w>
<acronym><acronymword>HDF</acronymword></acronym> file contains netCDF4 atomic types.
@@ -1508,23 +1507,51 @@ Unsigned bytes stay unsigned bytes.
64-bit integers stay 64-bit integers.
Strings stay strings.
Hence, <command>ncks</command> conversions often result in smaller files than
-<command>ncl_convert2nc</command> conversions.
-Finally, in February 2014, we learned that the <acronym><acronymword>HDF</acronymword></acronym> group
-has a project called <acronym><acronymword>H4CF</acronymword></acronym> whose goal is to make <acronym><acronymword>HDF4</acronymword></acronym>
-files accessible to <acronym><acronymword>CF</acronymword></acronym> tools and conventions.
+<command>ncl_convert2nc</command> conversions.</para></footnote>.
+</para>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="145"><code>hdf_name</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="146">illegal names</indexterm></cindex>
+<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.4 (May, 2014) both
+<command>ncl_convert2nc</command> and <acronym><acronymword>NCO</acronymword></acronym> have built-in, automatic
+workarounds to handle element names that contain characters that are
+legal in <acronym><acronymword>HDF</acronymword></acronym> though are illegal in <acronym><acronymword>netCDF</acronymword></acronym>.
+For example, slashes and leading special characters are are legal in
+<acronym><acronymword>HDF</acronymword></acronym> and illegal in <acronym><acronymword>netCDF</acronymword></acronym> element (i.e., group,
+variable, dimension, and attribute) names.
+<acronym><acronymword>NCO</acronymword></acronym> converts these forbidden characters to underscores, and
+retains the original names of variables in automatically produced
+attributes named <code>hdf_name</code>
+<footnote><para>Two real-world examples: <acronym><acronymword>NCO</acronymword></acronym> translates the
+<acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>CERES</acronymword></acronym> dimension <code>(FOV) Footprints</code> to
+<code>_FOV_ Footprints</code>, and
+<code>Cloud & Aerosol, Cloud Only, Clear Sky w/Aerosol, and Clear Sky</code>
+(yes, the dimension name includes whitespace and special characters) to
+<code>Cloud & Aerosol, Cloud Only, Clear Sky w_Aerosol, and Clear Sky</code>
+<command>ncl_convert2nc</command> makes the element name netCDF-safe in a
+slightly different manner, and also stores the original name in the
+<code>hdf_name</code> attribute.</para></footnote>.
+</para>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="147"><acronym><acronymword>H4CF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="148"><command>h4tonccf</command></indexterm></cindex>
+<para>Finally, in February 2014, we learned that the <acronym><acronymword>HDF</acronymword></acronym> group
+has a project called <acronym><acronymword>H4CF</acronymword></acronym>
+(described <uref><urefurl>http://hdfeos.org/software/h4cflib.php</urefurl><urefdesc spaces=" ">here</urefdesc></uref>)
+whose goal is to make <acronym><acronymword>HDF4</acronymword></acronym> files accessible to <acronym><acronymword>CF</acronymword></acronym>
+tools and conventions.
Their project includes a tool named <command>h4tonccf</command> that converts
<acronym><acronymword>HDF4</acronymword></acronym> files to netCDF3 or netCDF4 files.
-We know of no features in <command>h4tonccf</command> that are not in
-<acronym><acronymword>NCO</acronymword></acronym>. Corrections welcome.</para></footnote>.
+We are not yet sure what advantages or features <command>h4tonccf</command> has
+that are not in <acronym><acronymword>NCO</acronymword></acronym>, though we suspect both methods have their
+own advantages. Corrections welcome.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="147"><acronym><acronymword>RPM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="148">Debian</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="149"><acronym><acronymword>RPM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="150">Debian</indexterm></cindex>
<para>As of 2012, netCDF4 is relatively stable software.
Problems with netCDF4 and <acronym><acronymword>HDF</acronymword></acronym> libraries have mainly been fixed.
Binary <acronym><acronymword>NCO</acronymword></acronym> distributions shipped as <acronym><acronymword>RPM</acronymword></acronym>s and as debs
have used the netCDF4 library since 2010 and 2011, respectively.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="149"><code>NETCDF4_ROOT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="151"><code>NETCDF4_ROOT</code></indexterm></cindex>
<para>One must often build <acronym><acronymword>NCO</acronymword></acronym> from source to obtain netCDF4
support.
Typically, one specifies the root of the netCDF4
@@ -1551,11 +1578,11 @@ operators.
</section>
<node name="Help-Requests-and-Bug-Reports" spaces=" "><nodename>Help Requests and Bug Reports</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">netCDF2/3/4 and HDF4/5 Support</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
<section spaces=" "><sectiontitle>Help Requests and Bug Reports</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="150">reporting bugs</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="151">bugs, reporting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="152">core dump</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="153">help</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="154">features, requesting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="152">reporting bugs</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="153">bugs, reporting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="154">core dump</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="155">help</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="156">features, requesting</indexterm></cindex>
<para>We generally receive three categories of mail from users: help requests,
bug reports, and feature requests.
Notes saying the equivalent of "Hey, <acronym><acronymword>NCO</acronymword></acronym> continues to work
@@ -1602,9 +1629,9 @@ publicly released version of <acronym><acronymword>NCO</acronymword></acronym>.
<acronym><acronymword>NCO</acronymword></acronym> to perform a documented function, submit a help request.
Follow the same procedure as described below for reporting bugs
(after all, it might be a bug).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="155">debugging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="156"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="157"><code>-D</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="157">debugging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="158"><code>-r</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="159"><code>-D</code></indexterm></cindex>
That is, describe what you are trying to do, and include the complete
commands (run with <samp>-D 5</samp>), error messages, and version of
<acronym><acronymword>NCO</acronymword></acronym> (with <samp>-r</samp>).
@@ -1628,15 +1655,15 @@ two small dimensions ought to suffice.
<a name="dbg"></a> <!&textndash; http://nco.sf.net/nco.html#dbg &textndash;>
<a name="-D"></a> <!&textndash; http://nco.sf.net/nco.html#-D &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="158"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="159"><code>--revision</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="160"><code>--version</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="161"><code>--vrs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="162"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="163"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="164"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="165"><var>debug-level</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="166"><var>dbg_lvl</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="160"><code>-r</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="161"><code>--revision</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="162"><code>--version</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="163"><code>--vrs</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="164"><code>-D <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="165"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="166"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="167"><var>debug-level</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="168"><var>dbg_lvl</var></indexterm></cindex>
Run the operator with <samp>-r</samp> and then run the command with
<samp>-D 5</samp> to increase the verbosity of the debugging output.
It is very important that your report contain the exact error messages
@@ -1646,13 +1673,13 @@ publically accessible location, of the file(s).
Post the full bug report to the
<uref><urefurl>http://sf.net/bugs/?group_id=3331</urefurl><urefdesc spaces=" ">NCO Project buglist</urefdesc></uref>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="167">installation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="168"><command>autoconf</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="169"><file>nco.configure.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="170"><file>nco.config.log.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="171"><file>nco.make.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="172"><file>config.guess</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="173"><file>configure.eg</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="169">installation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="170"><command>autoconf</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="171"><file>nco.configure.${GNU_TRP}.foo</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="172"><file>nco.config.log.${GNU_TRP}.foo</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="173"><file>nco.make.${GNU_TRP}.foo</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="174"><file>config.guess</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="175"><file>configure.eg</file></indexterm></cindex>
<para>Build failures count as bugs.
Our limited machine access means we cannot fix all build failures.
The information we need to diagnose, and often fix, build failures
@@ -1665,7 +1692,7 @@ Here <code>${GNU_TRP}</code> is the "<acronym><acronymword>GN
the <var>chip-vendor-OS</var> string returned by <file>config.guess</file>.
Please send us your improvements to the examples supplied in
<file>configure.eg</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="174">regressions archive</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="176">regressions archive</indexterm></cindex>
The regressions archive at <url><urefurl>http://dust.ess.uci.edu/nco/rgr</urefurl></url>
contains the build output from our standard test systems.
You may find you can solve the build problem yourself by examining the
@@ -1697,8 +1724,8 @@ differences between these files and your own.
</html>
<node name="Philosophy" spaces=" "><nodename>Philosophy</nodename><nodenext spaces=" ">Climate Model Paradigm</nodenext><nodeprev spaces=" ">Strategies</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Philosophy</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="175">philosophy</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="176">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="177">philosophy</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="178">climate model</indexterm></cindex>
<para>The main design goal is command line operators which perform useful,
scriptable operations on netCDF files.
@@ -1712,11 +1739,11 @@ statistical packages, and are often more suitable for archival and
dissemination to the scientific community.
<acronym><acronymword>NCO</acronymword></acronym> performs a suite of operations useful in manipulating data
from the primary to the second level state.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="177"><acronym><acronymword>IDL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="178">Matlab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="179"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="180">Perl</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="181">Yorick</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="179"><acronym><acronymword>IDL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="180">Matlab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="181"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="182">Perl</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="183">Yorick</indexterm></cindex>
Higher level interpretive languages (e.g., <acronym><acronymword>IDL</acronymword></acronym>, Yorick,
Matlab, <acronym><acronymword>NCL</acronymword></acronym>, Perl, Python),
and lower level compiled languages (e.g., C, Fortran) can always perform
@@ -1724,7 +1751,7 @@ any task performed by <acronym><acronymword>NCO</acronymword></acronym>, but oft
NCO, on the other hand, is limited to a much smaller set of arithmetic
and metadata operations than these full blown languages.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="182">command line switches</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="184">command line switches</indexterm></cindex>
<para>Another goal has been to implement enough command line switches so that
frequently used sequences of these operators can be executed from a
shell script or batch file.
@@ -1739,9 +1766,9 @@ usage is detailed in <ref label="Memory-Requirements"><xrefnodename>Memory Requi
</section>
<node name="Climate-Model-Paradigm" spaces=" "><nodename>Climate Model Paradigm</nodename><nodenext spaces=" ">Temporary Output Files</nodenext><nodeprev spaces=" ">Philosophy</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Climate Model Paradigm</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="183">climate model</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="184"><acronym><acronymword>NCAR</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="185"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="185">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="186"><acronym><acronymword>NCAR</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="187"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> was developed at <acronym><acronymword>NCAR</acronymword></acronym> to aid analysis and
manipulation of datasets produced by General Circulation Models
@@ -1759,11 +1786,11 @@ environment are as easy to visualize for the layman as the expert.
</section>
<node name="Temporary-Output-Files" spaces=" "><nodename>Temporary Output Files</nodename><nodenext spaces=" ">Appending Variables</nodenext><nodeprev spaces=" ">Climate Model Paradigm</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Temporary Output Files </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="186">data safety</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="187">error tolerance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="188">safeguards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="189">temporary output files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="190">temporary files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="188">data safety</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="189">error tolerance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="190">safeguards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="191">temporary output files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="192">temporary files</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> operators are designed to be reasonably fault tolerant, so
that a system failure or user-abort of the operation (e.g., with
<kbd>C-c</kbd>) does not cause loss of data.
@@ -1787,10 +1814,10 @@ than just overwriting existing files &textldquo;in place&textrdquo; (because the
two copies of the same file on disk until the <acronym><acronymword>NCO</acronymword></acronym> operation
successfully concludes and the temporary output file overwrites the
existing <var>output-file</var>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="191">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="192">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="193">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="194">execution time</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="193">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="194">operator speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="195">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="196">execution time</indexterm></cindex>
Also, note this feature increases the execution time of the operator
by approximately the time it takes to copy the <var>output-file</var>
<footnote><para>The OS-specific system move command is used.
@@ -1804,13 +1831,13 @@ to be the same as the <var>input-file</var> without any danger of
<a name="no_tmp_fl"></a> <!&textndash; http://nco.sf.net/nco.html#no_tmp_fl &textndash;>
<a name="wrt_tmp_fl"></a> <!&textndash; http://nco.sf.net/nco.html#wrt_tmp_fl &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="195"><code>--no_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="196"><code>--wrt_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="197"><code>--write_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="198"><code>--create_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="199"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="200"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="201"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="197"><code>--no_tmp_fl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="198"><code>--wrt_tmp_fl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="199"><code>--write_tmp_fl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="200"><code>--create_ram</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="201"><code>--open_ram</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="202"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="203"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
<para>Over time many &textldquo;power users&textrdquo; have requested a way to turn-off the
fault-tolerance safety feature of automatically creating a temporary
file.
@@ -1867,15 +1894,15 @@ We welcome accounts of your experiences posted to the forums.
<a name="-A"></a> <!&textndash; http://nco.sf.net/nco.html#-A &textndash;>
<a name="-O"></a> <!&textndash; http://nco.sf.net/nco.html#-O &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="202"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="203"><code>-O</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="204"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="205"><code>--append</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="206"><code>--ovr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="207"><code>--overwrite</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="208">overwriting files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="209">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="210">appending to files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="204"><code>-A</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="205"><code>-O</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="206"><code>--apn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="207"><code>--append</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="208"><code>--ovr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="209"><code>--overwrite</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="210">overwriting files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="211">appending variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="212">appending to files</indexterm></cindex>
<para>Other safeguards exist to protect the user from inadvertently
overwriting data.
If the <var>output-file</var> specified for a command is a pre-existing file,
@@ -1901,10 +1928,10 @@ interactive keyboard input.
<node name="Appending-Variables" spaces=" "><nodename>Appending Variables</nodename><nodenext spaces=" ">Simple Arithmetic and Interpolation</nodenext><nodeprev spaces=" ">Temporary Output Files</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Appending Variables</sectiontitle>
<para>Adding variables from one file to another is often desirable.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="211">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="212">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="213">merging files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="214">pasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="213">concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="214">appending variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="215">merging files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="216">pasting variables</indexterm></cindex>
This is referred to as <dfn>appending</dfn>, although some prefer the
terminology <dfn>merging</dfn> <footnote><para>The terminology <dfn>merging</dfn> is
reserved for an (unwritten) operator which replaces hyperslabs of a
@@ -1912,7 +1939,7 @@ variable in one file with hyperslabs of the same variable from another
file</para></footnote> or <dfn>pasting</dfn>.
Appending is often confused with what <acronym><acronymword>NCO</acronymword></acronym> calls
<dfn>concatenation</dfn>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="215">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="217">record dimension</indexterm></cindex>
In <acronym><acronymword>NCO</acronymword></acronym>, concatenation refers to splicing a variable
along the record dimension.
The length along the record dimension of the output is the sum of the
@@ -1943,8 +1970,8 @@ the results of the operation in the existing <var>output-file</var>,
<html endspaces=" ">
<a name="unn"></a> <!&textndash; http://nco.sf.net/nco.html#unn &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="216">union of files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="217">disjoint files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="218">union of files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="219">disjoint files</indexterm></cindex>
<para>The simplest way to create the union of two files is
</para><example endspaces=" ">
<pre xml:space="preserve">ncks -A fl_1.nc fl_2.nc
@@ -1989,7 +2016,7 @@ operations from the command line.
<a name="sym_nces"></a> <!&textndash; http://nco.sf.net/nco.html#sym_nces &textndash;>
<a name="sym_ncrcat"></a> <!&textndash; http://nco.sf.net/nco.html#sym_ncrcat &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="218">symbolic links</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="220">symbolic links</indexterm></cindex>
<para>The most frequently used operators of <acronym><acronymword>NCO</acronymword></acronym> are probably the
<dfn>statisticians</dfn> (i.e., tools that do statistics) and concatenators.
Because there are so many types of statistics like averaging (e.g.,
@@ -2029,8 +2056,8 @@ First, let&textrsquo;s describe the concatenators, then the statistics tools.
</html>
<node name="Concatenation" spaces=" "><nodename>Concatenation</nodename><nodenext spaces=" ">Averaging</nodenext><nodeprev spaces=" ">Statistics vs. Concatenation</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
<subsection spaces=" "><sectiontitle>Concatenators <command>ncrcat</command> and <command>ncecat</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="219"><command>ncecat</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="220"><command>ncrcat</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="221"><command>ncecat</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="222"><command>ncrcat</command></indexterm></cindex>
<para>Joining together independent files along a common record dimension is
called <dfn>concatenation</dfn>.
@@ -2050,8 +2077,8 @@ file to file.
</para>
<para>However, suppose the annual files have no record variable, and thus
their data are all fixed length.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="221">ensemble</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="222">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="223">ensemble</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="224">climate model</indexterm></cindex>
For example, the files may not be conceptually sequential, but rather
members of the same group, or <dfn>ensemble</dfn>.
Members of an ensemble may have no reason to contain a record dimension.
@@ -2076,7 +2103,7 @@ data on different realizations of the same variables.
<xref label="ncecat-netCDF-Ensemble-Concatenator"><xrefnodename>ncecat netCDF Ensemble Concatenator</xrefnodename></xref>, for a complete description
of <command>ncecat</command>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="223"><command>ncpdq</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="225"><command>ncpdq</command></indexterm></cindex>
<html endspaces=" ">
<a name="dmn_cat"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_cat &textndash;>
</html>
@@ -2113,9 +2140,9 @@ To conserve system memory, use <command>ncrcat</command> where possible.
</subsection>
<node name="Averaging" spaces=" "><nodename>Averaging</nodename><nodenext spaces=" ">Interpolating</nodenext><nodeprev spaces=" ">Concatenation</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
<subsection spaces=" "><sectiontitle>Averagers <command>nces</command>, <command>ncra</command>, and <command>ncwa</command> </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="224"><command>nces</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="225"><command>ncra</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="226"><command>ncwa</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="226"><command>nces</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="227"><command>ncra</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="228"><command>ncwa</command></indexterm></cindex>
<para>The differences between the averagers <command>ncra</command> and <command>nces</command>
are analogous to the differences between the concatenators.
@@ -2147,7 +2174,7 @@ description of <command>ncra</command>).
</subsection>
<node name="Interpolating" spaces=" "><nodename>Interpolating</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Averaging</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
<subsection spaces=" "><sectiontitle>Interpolator <command>ncflint</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="227"><command>ncflint</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="229"><command>ncflint</command></indexterm></cindex>
<para><command>ncflint</command> can interpolate data between or two files.
Since no other operators have this ability, the description of
@@ -2164,13 +2191,13 @@ units.
</section>
<node name="Large-Numbers-of-Files" spaces=" "><nodename>Large Numbers of Files</nodename><nodenext spaces=" ">Large Datasets</nodenext><nodeprev spaces=" ">Statistics vs. Concatenation</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Large Numbers of Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="228">files, numerous input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="229"><code>-n <var>loop</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="230">files, numerous input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="231"><code>-n <var>loop</var></code></indexterm></cindex>
<para>Occasionally one desires to digest (i.e., concatenate or average)
hundreds or thousands of input files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="230">automagic</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="231"><acronym><acronymword>NASA EOSDIS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="232">automagic</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="233"><acronym><acronymword>NASA EOSDIS</acronymword></acronym></indexterm></cindex>
Unfortunately, data archives (e.g., <acronym><acronymword>NASA EOSDIS</acronymword></acronym>) may not
name netCDF files in a format understood by the <samp>-n <var>loop</var></samp>
switch (<pxref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></pxref>) that automagically generates
@@ -2203,8 +2230,8 @@ filenames to <acronym><acronymword>NCO</acronymword></acronym> in environment-li
<html endspaces=" ">
<a name="stdin"></a> <!&textndash; http://nco.sf.net/nco.html#stdin &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="232">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="233"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="234">standard input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="235"><code>stdin</code></indexterm></cindex>
<para>The recommended method for sending very large numbers (hundreds or
more, typically) of input filenames to the multi-file operators is
to pass the filenames with the <acronym><acronymword>UNIX</acronymword></acronym> <dfn>standard input</dfn>
@@ -2219,10 +2246,10 @@ A drawback to this method is that the <code>history</code> attribute
(<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>) does not record the name of any input
files since the names were not passed on the command line.
This makes determining the data provenance at a later date difficult.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="234"><code>nco_input_file_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="235"><code>nco_input_file_list</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="236">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="237">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="236"><code>nco_input_file_number</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="237"><code>nco_input_file_list</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="238">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="239">attributes, global</indexterm></cindex>
To remedy this situation, multi-file operators store the number of
input files in the <code>nco_input_file_number</code> global attribute and the
input file list itself in the <code>nco_input_file_list</code> global attribute
@@ -2231,13 +2258,13 @@ Although this does not preserve the exact command used to generate the
file, it does retains all the information required to reconstruct the
command and determine the data provenance.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="238">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="239">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="240">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="241">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="242">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="243"><command>xargs</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="244"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="240">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="241">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="242">extended regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="243">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="244">pattern matching</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="245"><command>xargs</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="246"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
<para>A second option is to use the <acronym><acronymword>UNIX</acronymword></acronym> <command>xargs</command> command.
This simple example selects as input to <command>xargs</command> all the
filenames in the current directory that match a given pattern.
@@ -2256,7 +2283,7 @@ matching filenames to an <acronym><acronymword>NCO</acronymword></acronym> multi
<pre xml:space="preserve"># Use xargs to transfer filenames on the command line
/bin/ls | grep ${CASEID}_'......'.nc | xargs -x ncecat -o foo.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="245">pipes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="247">pipes</indexterm></cindex>
<para>The single quotes protect the only sensitive parts of the extended
regular expression (the <command>grep</command> argument), and allow shell
interpolation (the <code>${CASEID}</code> variable substitution) to
@@ -2264,9 +2291,9 @@ proceed unhindered on the rest of the command.
<command>xargs</command> uses the <acronym><acronymword>UNIX</acronymword></acronym> pipe feature to append the
suitably filtered input file list to the end of the <command>ncecat</command>
command options.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="246">output file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="247">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="248"><code>-o <var>fl_out</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="248">output file</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="249">input files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="250"><code>-o <var>fl_out</var></code></indexterm></cindex>
The <code>-o foo.nc</code> switch ensures that the input files supplied by
<command>xargs</command> are not confused with the output file name.
<command>xargs</command> does, unfortunately, have its own limit (usually about
@@ -2276,7 +2303,7 @@ reaches this internal limit.
When this occurs, use either the <code>stdin</code> method above, or the
symbolic link presented next.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="249">symbolic links</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="251">symbolic links</indexterm></cindex>
<para>Even when its internal limits have not been reached, the
<command>xargs</command> technique may not be sophisticated enough to handle
all situations.
@@ -2285,12 +2312,12 @@ of filtering input filenames, and any number of filenames.
The technique of last resort is to write a script that creates symbolic
links between the irregular input filenames and a set of regular,
arithmetic filenames that the <samp>-n <var>loop</var></samp> switch understands.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="250">Perl</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="252">Perl</indexterm></cindex>
For example, the following Perl script creates a monotonically
enumerated symbolic link to up to one million <file>.nc</file> files in a
directory. If there are 999,999 netCDF files present, the links are
named <file>000001.nc</file> to <file>999999.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="251"><code>-n <var>loop</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="253"><code>-n <var>loop</var></code></indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve"># Create enumerated symbolic links
/bin/ls | grep \.nc | perl -e \
@@ -2303,7 +2330,7 @@ ncecat -n 999999,6,1 000001.nc foo.nc
automatically generate the filnames of the symbolic links.
This circumvents any <acronym><acronymword>OS</acronymword></acronym> and shell limits on command line size.
The symbolic links are easily removed once <acronym><acronymword>NCO</acronymword></acronym> is finished.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="252"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="254"><code>history</code></indexterm></cindex>
One drawback to this method is that the <code>history</code> attribute
(<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>) retains the filename list of the symbolic
links, rather than the data files themselves.
@@ -2313,9 +2340,9 @@ date.
</section>
<node name="Large-Datasets" spaces=" "><nodename>Large Datasets</nodename><nodenext spaces=" ">Memory Requirements</nodenext><nodeprev spaces=" ">Large Numbers of Files</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Large Datasets</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="253">large datasets</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="254">LFS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="255">Large File Support</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="255">large datasets</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="256">LFS</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="257">Large File Support</indexterm></cindex>
<para><dfn>Large datasets</dfn> are those files that are comparable in size to the
amount of random access memory (<acronym><acronymword>RAM</acronymword></acronym>) in your computer.
@@ -2323,7 +2350,7 @@ Many users of <acronym><acronymword>NCO</acronymword></acronym> work with files
Files this large not only push the current edge of storage technology,
they present special problems for programs which attempt to access the
entire file at once, such as <command>nces</command> and <command>ncecat</command>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="256">swap space</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="258">swap space</indexterm></cindex>
If you work with a <w>300 MB</w> files on a machine with only <w>32 MB</w> of
memory then you will need large amounts of swap space (virtual memory on
disk) and <acronym><acronymword>NCO</acronymword></acronym> will work slowly, or even fail.
@@ -2339,24 +2366,24 @@ memory requirements.
With this knowledge you may re-design your data reduction approach to
divide the problem into pieces solvable in memory-limited situations.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="257">server</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="258"><acronym><acronymword>UNICOS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="259">Cray</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="259">server</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="260"><acronym><acronymword>UNICOS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="261">Cray</indexterm></cindex>
<para>If your local machine has problems working with large files, try running
<acronym><acronymword>NCO</acronymword></acronym> from a more powerful machine, such as a network server.
Certain machine architectures, e.g., Cray <acronym><acronymword>UNICOS</acronymword></acronym>, have special
commands which allow one to increase the amount of interactive memory.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="260"><code>ilimit</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="262"><code>ilimit</code></indexterm></cindex>
On Cray systems, try to increase the available memory with the
<code>ilimit</code> command.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="261"><acronym><acronymword>GNU</acronymword></acronym>/Linux</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="262"><code>ulimit</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="263"><code>core dump</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="263"><acronym><acronymword>GNU</acronymword></acronym>/Linux</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="264"><code>ulimit</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="265"><code>core dump</code></indexterm></cindex>
If you get a memory-related core dump
(e.g., <samp>Error exit (core dumped)</samp>) on a <acronym><acronymword>GNU</acronymword></acronym>/Linux system,
try increasing the process-available memory with <code>ulimit</code>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="264">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="266">speed</indexterm></cindex>
<para>The speed of the <acronym><acronymword>NCO</acronymword></acronym> operators also depends on file size.
When processing large files the operators may appear to hang, or do
nothing, for large periods of time.
@@ -2365,12 +2392,12 @@ activate a more verbose output mode.
This is accomplished by supplying a number greater <w>than 0</w> to the
<samp>-D <var>debug-level</var></samp> (or <samp>--debug-level</samp>, or
<samp>--dbg_lvl</samp>) switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="265"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="266"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="267"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="268"><var>debug-level</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="269"><var>dbg_lvl</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="270">debugging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="267"><code>-D <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="268"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="269"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="270"><var>debug-level</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="271"><var>dbg_lvl</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="272">debugging</indexterm></cindex>
When the <var>debug-level</var> is nonzero, the operators report their
current status to the terminal through the <var>stderr</var> facility.
Using <samp>-D</samp> does not slow the operators down.
@@ -2386,14 +2413,14 @@ multi-file <acronym><acronymword>NCO</acronymword></acronym> operators consume i
</section>
<node name="Memory-Requirements" spaces=" "><nodename>Memory Requirements</nodename><nodenext spaces=" ">Performance</nodenext><nodeprev spaces=" ">Large Datasets</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Memory Requirements</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="271">memory requirements</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="272">memory available</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="273"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="274">swap space</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="275">peak memory usage</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="276"><code>--ram_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="277"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="278"><code>--diskless_all</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="273">memory requirements</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="274">memory available</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="275"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="276">swap space</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="277">peak memory usage</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="278"><code>--ram_all</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="279"><code>--open_ram</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="280"><code>--diskless_all</code></indexterm></cindex>
<para>Many people use <acronym><acronymword>NCO</acronymword></acronym> on gargantuan files which dwarf the
memory available (free <acronym><acronymword>RAM</acronymword></acronym> plus swap space) even on today&textrsquo;s powerful
@@ -2403,9 +2430,9 @@ so that their scripts do not have to tediously cut files into smaller
pieces that fit into memory.
We commend these greedy users for pushing <acronym><acronymword>NCO</acronymword></acronym> to its limits!
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="279">threads</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="280">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="281">shared memory machines</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="281">threads</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="282">OpenMP</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="283">shared memory machines</indexterm></cindex>
<para>This section describes the memory <acronym><acronymword>NCO</acronymword></acronym> requires during
operation.
The required memory is based on the underlying algorithms.
@@ -2425,7 +2452,7 @@ the exception of <command>ncap2</command>.
<node name="Single-and-Multi_002dfile-Operators" spaces=" "><nodename>Single and Multi-file Operators</nodename><nodenext spaces=" ">Memory for ncap2</nodenext><nodeprev spaces=" ">Memory Requirements</nodeprev><nodeup spaces=" ">Memory Requirements</nodeup></node>
<subsection spaces=" "><sectiontitle>Single and Multi-file Operators</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="282">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="284">multi-file operators</indexterm></cindex>
<para>The multi-file operators currently comprise the record operators,
<command>ncra</command> and <command>ncrcat</command>, and the ensemble operators,
<command>nces</command> and <command>ncecat</command>.
@@ -2515,22 +2542,22 @@ If weights and masks are <emph>not</emph> specified
then <command>ncwa</command> requirements drop to <math>MS <= 3VT</math>
(one input variable, one tally array, and the output variable).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="283">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="284">threads</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="285">OpenMP</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="286">threads</indexterm></cindex>
<para>The above memory requirements must be multiplied by the number of
threads <var>thr_nbr</var> (<pxref label="OpenMP-Threading"><xrefnodename>OpenMP Threading</xrefnodename></pxref>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="285"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="287"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
If this causes problems then reduce (with <samp>-t <var>thr_nbr</var></samp>) the
number of threads.
</para>
</subsection>
<node name="Memory-for-ncap2" spaces=" "><nodename>Memory for ncap2</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Single and Multi-file Operators</nodeprev><nodeup spaces=" ">Memory Requirements</nodeup></node>
<subsection spaces=" "><sectiontitle>Memory for <command>ncap2</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="286"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="287">binary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="288">unary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="289">memory leaks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="290">left hand casting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="288"><command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="289">binary operations</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="290">unary operations</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="291">memory leaks</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="292">left hand casting</indexterm></cindex>
<para><command>ncap2</command> has unique memory requirements due its ability to process
arbitrarily long scripts of any complexity.
All scripts acceptable to <command>ncap2</command> are ultimately processed as a
@@ -2565,8 +2592,8 @@ interested in receiving a detailed bug report.
<node name="Performance" spaces=" "><nodename>Performance</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Memory Requirements</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
<section spaces=" "><sectiontitle>Performance</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="291">papers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="292">overview</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="293">papers</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="294">overview</indexterm></cindex>
<para>An overview of <acronym><acronymword>NCO</acronymword></acronym> capabilities as of about 2006 is in
Zender, C. S. (2008),
&textldquo;Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO)&textrdquo;,
@@ -2574,8 +2601,8 @@ Environ. Modell. Softw., doi:10.1016/j.envsoft.2008.03.004.
This paper is also available at
<url><urefurl>http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf</urefurl></url>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="293">scaling</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="294">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="295">scaling</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="296">performance</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> performance and scaling for arithmetic operations is
described in
Zender, C. S., and H. J. Mangalam (2007),
@@ -2589,35 +2616,35 @@ This paper is also available at
that can limit its performance:
</para><enumerate first="1" endspaces=" ">
<listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="295">buffering</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="297">buffering</indexterm></cindex>
<para>No data buffering is performed during <command>nc_get_var</command> and
<command>nc_put_var</command> operations.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="296">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="297">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="298">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="299">execution time</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="298">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="299">operator speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="300">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="301">execution time</indexterm></cindex>
Hyperslabs too large too hold in core memory will suffer substantial
performance penalties because of this.
</para>
</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="300">monotonic coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="302">monotonic coordinates</indexterm></cindex>
<para>Since coordinate variables are assumed to be monotonic, the search for
bracketing the user-specified limits should employ a quicker algorithm,
like bisection, than the two-sided incremental search currently
implemented.
</para>
</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="301"><var>C_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="302"><var>FORTRAN_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="303"><var>signedness</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="304"><var>scale_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="305"><var>add_offset</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="303"><var>C_format</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="304"><var>FORTRAN_format</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="305"><var>signedness</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="306"><var>scale_format</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="307"><var>add_offset</var></indexterm></cindex>
<para><var>C_format</var>, <var>FORTRAN_format</var>, <var>signedness</var>,
<var>scale_format</var> and <var>add_offset</var> attributes are ignored by
<command>ncks</command> when printing variables to screen.
</para>
</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="306">Yorick</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="308">Yorick</indexterm></cindex>
<para>In the late 1990s it was discovered that some random access operations
on large files on certain architectures (e.g., <acronym><acronymword>UNICOS</acronymword></acronym>) were
much slower with <acronym><acronymword>NCO</acronymword></acronym> than with similar operations performed
@@ -2641,7 +2668,7 @@ been reduced or eliminated.
described here for brevity.
The description of each feature is preceded by a box listing the
operators for which the feature is implemented.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="307">command line switches</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="309">command line switches</indexterm></cindex>
Command line switches for a given feature are consistent across all
operators wherever possible.
If no &textldquo;key switches&textrdquo; are listed for a feature, then that particular
@@ -2694,12 +2721,12 @@ feature is automatic and cannot be controlled by the user.
</html>
<node name="Internationalization" spaces=" "><nodename>Internationalization</nodename><nodenext spaces=" ">Metadata Optimization</nodenext><nodeprev spaces=" ">Common features</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Internationalization</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="308">Internationalization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="309">I18N</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="310">Internationalization</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="311">I18N</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="310">L10N</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="312">L10N</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> support for <dfn>internationalization</dfn> of textual input
and output (e.g., Warning messages) is nascent.
We hope to produce foreign language string catalogues in 2004.
@@ -2712,14 +2739,14 @@ We hope to produce foreign language string catalogues in 2004.
</section>
<node name="Metadata-Optimization" spaces=" "><nodename>Metadata Optimization</nodename><nodenext spaces=" ">OpenMP Threading</nodenext><nodeprev spaces=" ">Internationalization</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Metadata Optimization</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="311">metadata optimization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="312">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="313">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="314">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="315">execution time</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="316"><code>nc__enddef()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="317"><code>--hdr_pad <var>hdr_pad</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="318"><code>--header_pad <var>hdr_pad</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="313">metadata optimization</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="314">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="315">operator speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="316">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="317">execution time</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="318"><code>nc__enddef()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="319"><code>--hdr_pad <var>hdr_pad</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="320"><code>--header_pad <var>hdr_pad</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: None&linebreak;
@@ -2750,16 +2777,16 @@ library (<pxref label="File-Formats-and-Conversion"><xrefnodename>File Formats a
</section>
<node name="OpenMP-Threading" spaces=" "><nodename>OpenMP Threading</nodename><nodenext spaces=" ">Command Line Options</nodenext><nodeprev spaces=" ">Metadata Optimization</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>OpenMP Threading</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="319">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="320">threads</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="321"><acronym><acronymword>SMP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="322">shared memory parallelism</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="323">parallelism</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="324"><code>nco_openmp_thread_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="325"><code>--thr_nbr <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="326"><code>--threads <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="327"><code>--omp_num_threads <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="328"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="321">OpenMP</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="322">threads</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="323"><acronym><acronymword>SMP</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="324">shared memory parallelism</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="325">parallelism</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="326"><code>nco_openmp_thread_number</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="327"><code>--thr_nbr <var>thr_nbr</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="328"><code>--threads <var>thr_nbr</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="329"><code>--omp_num_threads <var>thr_nbr</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="330"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncrcat</command>,
@@ -2792,20 +2819,20 @@ The main benefits of threading so far have been to isolate the serial
from parallel portions of code.
This parallelism is now exploited by OpenMP but then runs into the I/O
bottleneck during output.
-The bottleneck could be ameliorated for large files by the use of
+The bottleneck will be ameliorated for large files by the use of
MPI-enabled calls in the netCDF4 library when the underlying filesystem
is parallel (e.g., <acronym><acronymword>PVFS</acronymword></acronym> or <acronym><acronymword>JFS</acronymword></acronym>).
Implementation of the parallel output calls in <acronym><acronymword>NCO</acronymword></acronym> is not a
goal of our current funding and would require new volunteers or funding.
</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="329"><var>thr_nbr</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="330"><code>OMP_NUM_THREADS</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="331"><command>ncrcat</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="332"><command>ncwa</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="333"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="334"><command>ncpdq</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="335">large datasets</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="331"><var>thr_nbr</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="332"><code>OMP_NUM_THREADS</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="333"><command>ncrcat</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="334"><command>ncwa</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="335"><command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="336"><command>ncpdq</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="337">large datasets</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> may modify <var>thr_nbr</var> according to its own internal
settings before it requests any threads from the system.
Certain operators contain hard-code limits to the number of threads they
@@ -2834,8 +2861,8 @@ Hence we restrict <math><var>thr_nbr</var> <= 4</math> for all operators.
We encourage users to play with these limits (edit file
<file>nco_omp.c</file>) and send us their feedback.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="336">debugging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="337"><var>dbg_lvl</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="338">debugging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="339"><var>dbg_lvl</var></indexterm></cindex>
<para>Once the initial <var>thr_nbr</var> has been modified for any
operator-specific limits, <acronym><acronymword>NCO</acronymword></acronym> requests the system to allocate
a team of <var>thr_nbr</var> threads for the body of the code.
@@ -2850,7 +2877,7 @@ This attribute contains the number of threads the operator used to
process the input files.
This information helps to verify that the answers with threaded and
non-threaded operators are equal to within machine precision.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="338">benchmarks</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="340">benchmarks</indexterm></cindex>
This information is also useful for benchmarking.
</para>
<html endspaces=" ">
@@ -2859,14 +2886,14 @@ This information is also useful for benchmarking.
</section>
<node name="Command-Line-Options" spaces=" "><nodename>Command Line Options</nodename><nodenext spaces=" ">Specifying Input Files</nodenext><nodeprev spaces=" ">OpenMP Threading</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Command Line Options</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="339">command line options</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="341">command line options</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="340"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="341"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="342"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="343">switches</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="342"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="343"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="344"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="345">switches</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> achieves flexibility by using <dfn>command line options</dfn>.
These options are implemented in all traditional <acronym><acronymword>UNIX</acronymword></acronym> commands
as single letter <dfn>switches</dfn>, e.g., <samp>ls -l</samp>.
@@ -2883,13 +2910,13 @@ More importantly, mnemonics for single letter options are often
non-intuitive so that long options provide a more natural way of
expressing intent.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="344">long options</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="346">long options</indexterm></cindex>
<para>Extended options, also called long options, are implemented using the
system-supplied <file>getopt.h</file> header file, if possible.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="345"><code>BSD</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="346"><code>getopt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="347"><code>getopt_long</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="348"><file>getopt.h</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="347"><code>BSD</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="348"><code>getopt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="349"><code>getopt_long</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="350"><file>getopt.h</file></indexterm></cindex>
This provides the <command>getopt_long</command> function to <acronym><acronymword>NCO</acronymword></acronym>
<footnote spaces="\n"><para>If a <command>getopt_long</command> function cannot be found on the system,
<acronym><acronymword>NCO</acronymword></acronym> will use the <command>getopt_long</command> from the
@@ -2898,8 +2925,8 @@ This provides the <command>getopt_long</command> function to <acronym><acronymwo
This is <acronym><acronymword>BSD</acronymword></acronym>-licensed software available from
<uref><urefurl>http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt</urefurl></uref>.</para></footnote>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="349"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="350"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="351"><code>-D <var>debug-level</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="352"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
<para>The syntax of <dfn>short options</dfn> (single letter options) is
<kbd>-<var>key</var> <var>value</var></kbd> (dash-key-space-value).
Here, <var>key</var> is the single letter option name, e.g.,
@@ -2969,19 +2996,19 @@ name that most suits their taste.
</section>
<node name="Specifying-Input-Files" spaces=" "><nodename>Specifying Input Files</nodename><nodenext spaces=" ">Specifying Output Files</nodenext><nodeprev spaces=" ">Command Line Options</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Specifying Input Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="351">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="352">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="353">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="354">wildcards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="355"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="356">Processor, <acronym><acronymword>CCM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="357"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="358"><code>-n <var>loop</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="359"><code>--nintap <var>loop</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="360"><code>-p <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="361"><code>--pth <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="362"><code>--path <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="363"><var>input-path</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="353">input files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="354">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="355">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="356">wildcards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="357"><code>NINTAP</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="358">Processor, <acronym><acronymword>CCM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="359"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="360"><code>-n <var>loop</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="361"><code>--nintap <var>loop</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="362"><code>-p <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="363"><code>--pth <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="364"><code>--path <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="365"><var>input-path</var></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability (<code>-n</code>): <command>nces</command>, <command>ncecat</command>, <command>ncra</command>, <command>ncrcat</command>&linebreak;
Availability (<code>-p</code>): All operators&linebreak;
@@ -2991,7 +3018,7 @@ Long options: <samp>--nintap</samp>, <samp>--pth</samp>, <samp>--path</samp>&lin
<para>It is important that users be able to specify multiple input files
without typing every filename in full, often a tedious task even
by graduate student standards.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="364"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="366"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
There are four different ways of specifying input files to <acronym><acronymword>NCO</acronymword></acronym>:
explicitly typing each, using <acronym><acronymword>UNIX</acronymword></acronym> shell wildcards, and using
the <acronym><acronymword>NCO</acronymword></acronym> <samp>-n</samp> and <samp>-p</samp> switches (or their long option
@@ -3032,8 +3059,8 @@ automatically generated if necessary.
the entire set of filenames
<footnote><para>The <samp>-n</samp> option is a backward compatible superset of the
<code>NINTAP</code> option from the <acronym><acronymword>NCAR</acronymword></acronym> <acronym><acronymword>CCM</acronymword></acronym> Processor.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="365">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="366">files, multiple</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="367">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="368">files, multiple</indexterm></cindex>
This option is only available with the <dfn>multi-file operators</dfn>:
<command>ncra</command>, <command>ncrcat</command>, <command>nces</command>, and <command>ncecat</command>.
By definition, multi-file operators are able to process an arbitrary
@@ -3070,8 +3097,8 @@ are ignored by <acronym><acronymword>NCO</acronymword></acronym> as it uses the
locate, evaluate, and compute the <var>numeric_suffix</var> component of
filenames.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="367">wrapped filenames</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="368">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="369">wrapped filenames</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="370">climate model</indexterm></cindex>
<para>Recently the <samp>-n</samp> option has been extended to allow convenient
specification of filenames with &textldquo;circular&textrdquo; characteristics.
This means it is now possible for <acronym><acronymword>NCO</acronymword></acronym> to automatically
@@ -3119,13 +3146,13 @@ automatically generate, in order, the filenames <file>85_12.nc</file>,
</section>
<node name="Specifying-Output-Files" spaces=" "><nodename>Specifying Output Files</nodename><nodenext spaces=" ">Remote storage</nodenext><nodeprev spaces=" ">Specifying Input Files</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Specifying Output Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="369">output file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="370">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="371">positional arguments</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="372">command line switches</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="373"><code>-o <var>fl_out</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="374"><code>--output <var>fl_out</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="375"><code>--fl_out <var>fl_out</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="371">output file</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="372">input files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="373">positional arguments</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="374">command line switches</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="375"><code>-o <var>fl_out</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="376"><code>--output <var>fl_out</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="377"><code>--fl_out <var>fl_out</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-o</samp>&linebreak;
@@ -3143,14 +3170,14 @@ line switch argument method, <samp>-o <var>fl_out</var></samp>.
<para>Specifying <var>fl_out</var> with a switch, rather than as a positional
argument, allows <var>fl_out</var> to precede input files in the argument
list.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="376">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="378">multi-file operators</indexterm></cindex>
This is particularly useful with multi-file operators for three reasons.
Multi-file operators may be invoked with hundreds (or more) filenames.
Visual or automatic location of <var>fl_out</var> in such a list is
difficult when the only syntactic distinction between input and output
files is their position.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="377"><command>xargs</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="378">input files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="379"><command>xargs</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="380">input files</indexterm></cindex>
Second, specification of a long list of input files may be difficult
(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
Making the input file list the final argument to an operator facilitates
@@ -3158,8 +3185,8 @@ using <command>xargs</command> for this purpose.
Some alternatives to <command>xargs</command> are very ugly and undesirable.
Finally, many users are more comfortable specifying output files
with <samp>-o <var>fl_out</var></samp> near the beginning of an argument list.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="379">compilers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="380">linkers</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="381">compilers</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="382">linkers</indexterm></cindex>
Compilers and linkers are usually invoked this way.
</para>
<para>Users should specify <var>fl_out</var> using either (not both) method.
@@ -3173,26 +3200,26 @@ precedence.
</section>
<node name="Remote-storage" spaces=" "><nodename>Remote storage</nodename><nodenext spaces=" ">Retaining Retrieved Files</nodenext><nodeprev spaces=" ">Specifying Output Files</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Accessing Remote Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="381"><code>rcp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="382"><code>scp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="383"><file>.rhosts</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="384"><acronym><acronymword>NCAR MSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="385"><acronym><acronymword>MSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="386">Mass Store System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="387"><acronym><acronymword>URL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="388"><code>ftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="389"><code>sftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="390"><code>wget</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="391">remote files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="392">synchronous file access</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="393">asynchronous file access</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="394"><code>--pth <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="395"><code>--path <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="396"><code>--lcl <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="397"><code>--local <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="398"><code>-l <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="399"><file>.netrc</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="400"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="383"><code>rcp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="384"><code>scp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="385"><file>.rhosts</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="386"><acronym><acronymword>NCAR MSS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="387"><acronym><acronymword>MSS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="388">Mass Store System</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="389"><acronym><acronymword>URL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="390"><code>ftp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="391"><code>sftp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="392"><code>wget</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="393">remote files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="394">synchronous file access</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="395">asynchronous file access</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="396"><code>--pth <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="397"><code>--path <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="398"><code>--lcl <var>output-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="399"><code>--local <var>output-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="400"><code>-l <var>output-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="401"><file>.netrc</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="402"><code>history</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-p</samp>, <samp>-l</samp>&linebreak;
@@ -3261,11 +3288,11 @@ to the remote machine.
This means that <file>~/.rhosts</file> or <file>~/ssh/authorized_keys</file> must
be set accordingly on both local and remote machines.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="401"><acronym><acronymword>HPSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="402"><command>hsi</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="403"><command>msrcp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="404"><command>msread</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="405"><command>nrnet</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="403"><acronym><acronymword>HPSS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="404"><command>hsi</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="405"><command>msrcp</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="406"><command>msread</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="407"><command>nrnet</command></indexterm></cindex>
<html endspaces=" ">
<a name="hpss"></a> <!&textndash; http://nco.sf.net/nco.html#hpss &textndash;>
<a name="HPSS"></a> <!&textndash; http://nco.sf.net/nco.html#HPSS &textndash;>
@@ -3326,10 +3353,10 @@ The sixth command works if your local version of <acronym><acronymword>NCO</acro
or if the remote file is accessible via <command>wget</command>.
The above commands can be rewritten using the <samp>-p <var>input-path</var></samp>
option as follows:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="406"><code>-p <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="407"><var>input-path</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="408"><code>-l <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="409"><var>output-path</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="408"><code>-p <var>input-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="409"><var>input-path</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="410"><code>-l <var>output-path</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="411"><var>output-path</var></indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncks -p ftp://dust.ess.uci.edu/pub/zender/nco -l . in.nc
ncks -p sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco -l . in.nc
@@ -3343,7 +3370,7 @@ ncks -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
<para>Using <samp>-p</samp> is recommended because it clearly separates the
<var>input-path</var> from the filename itself, sometimes called the
<dfn>stub</dfn>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="410">stub</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="412">stub</indexterm></cindex>
When <var>input-path</var> is not explicitly specified using <samp>-p</samp>,
<acronym><acronymword>NCO</acronymword></acronym> internally generates an <var>input-path</var> from the first
input filename.
@@ -3381,17 +3408,17 @@ syntactically more clear.
</html>
<node name="OPeNDAP" spaces=" "><nodename>OPeNDAP</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Remote storage</nodeprev><nodeup spaces=" ">Remote storage</nodeup></node>
<subsection spaces=" "><sectiontitle><acronym><acronymword>OPeNDAP</acronymword></acronym></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="411"><acronym><acronymword>DAP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="412"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="413"><acronym><acronymword>HTTP</acronymword></acronym> protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="414"><env>DODS_ROOT</env></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="415">Distributed Oceanographic Data System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="416">oceanography</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="417">data access protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="418">Open-source Project for a Network Data Access Protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="419"><acronym><acronymword>OPeNDAP</acronymword></acronym>.</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="420">server</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="421">client-server</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="413"><acronym><acronymword>DAP</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="414"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="415"><acronym><acronymword>HTTP</acronymword></acronym> protocol</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="416"><env>DODS_ROOT</env></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="417">Distributed Oceanographic Data System</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="418">oceanography</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="419">data access protocol</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="420">Open-source Project for a Network Data Access Protocol</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="421"><acronym><acronymword>OPeNDAP</acronymword></acronym>.</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="422">server</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="423">client-server</indexterm></cindex>
<para>The Distributed Oceanographic Data System (<acronym><acronymword>DODS</acronymword></acronym>) provides
useful replacements for common data interface libraries like netCDF.
The <acronym><acronymword>DODS</acronymword></acronym> versions of these libraries implement network
@@ -3407,9 +3434,9 @@ We use the terms <acronym><acronymword>DODS</acronymword></acronym> and <acronym
and often write <acronym><acronymword>OPeNDAP</acronymword></acronym>/<acronym><acronymword>DODS</acronymword></acronym> for now.
In the future we will deprecate <acronym><acronymword>DODS</acronymword></acronym> in favor of
<acronym><acronymword>DAP</acronymword></acronym> or <acronym><acronymword>OPeNDAP</acronymword></acronym>, as appropriate
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="422"><acronym><acronymword>NVODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="423">National Virtual Ocean Data System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="424">open source</indexterm></cindex>
+<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="424"><acronym><acronymword>NVODS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="425">National Virtual Ocean Data System</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="426">open source</indexterm></cindex>
<para><acronym><acronymword>DODS</acronymword></acronym> is being deprecated because it is ambiguous, referring
both to a protocol and to a collection of (oceanography) data.
It is superceded by two terms.
@@ -3426,7 +3453,7 @@ Got it yet?</para></footnote>.
</para>
<para><acronym><acronymword>NCO</acronymword></acronym> may be <acronym><acronymword>DAP</acronymword></acronym>-enabled by linking
<acronym><acronymword>NCO</acronymword></acronym> to the <acronym><acronymword>OPeNDAP</acronymword></acronym> libraries.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="425"><file>Makefile</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="427"><file>Makefile</file></indexterm></cindex>
This is described in the <acronym><acronymword>OPeNDAP</acronymword></acronym> documentation and
automagically implemented in <acronym><acronymword>NCO</acronymword></acronym> build mechanisms
<footnote spaces="\n"><para>Automagic support for <acronym><acronymword>DODS</acronymword></acronym> version 3.2.x was deprecated in
@@ -3465,8 +3492,8 @@ Check there and on the
to learn more about the extensive capabilities of <acronym><acronymword>OPeNDAP</acronymword></acronym>
<footnote spaces="\n"><para>We are most familiar with the <acronym><acronymword>OPeNDAP</acronymword></acronym> ability to enable
network-transparent data access.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="426">constraint expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="427">server-side processing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="428">constraint expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="429">server-side processing</indexterm></cindex>
<acronym><acronymword>OPeNDAP</acronymword></acronym> has many other features, including sophisticated
hyperslabbing and server-side processing via <dfn>constraint expressions</dfn>.
If you know more about this, please consider writing a section
@@ -3521,8 +3548,8 @@ http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/su
pres.sfc.1969.nc ~/foo.nc
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="428">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="429">unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="430">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="431">unpacking</indexterm></cindex>
<para>All with one command!
The data in this particular input file also happen to be packed
(<pxref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></pxref>), although this is completely transparent
@@ -3534,7 +3561,7 @@ attempting arithmetic.
Input files are first copied to the local machine, then processed.
The <acronym><acronymword>OPeNDAP</acronymword></acronym> server performs data access, hyperslabbing,
and transfer to the local machine.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="430">I/O</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="432">I/O</indexterm></cindex>
This allows the I/O to appear to <acronym><acronymword>NCO</acronymword></acronym> as if the input files
were local.
The local machine performs all arithmetic operations.
@@ -3581,12 +3608,12 @@ which to test <acronym><acronymword>NCO</acronymword></acronym> are welcome.
</section>
<node name="Retaining-Retrieved-Files" spaces=" "><nodename>Retaining Retrieved Files</nodename><nodenext spaces=" ">File Formats and Conversion</nodenext><nodeprev spaces=" ">Remote storage</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Retaining Retrieved Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="431">file deletion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="432">file removal</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="433">file retention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="434"><code>-R</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="435"><code>--rtn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="436"><code>--retain</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="433">file deletion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="434">file removal</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="435">file retention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="436"><code>-R</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="437"><code>--rtn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="438"><code>--retain</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-R</samp>&linebreak;
@@ -3610,15 +3637,15 @@ This allows <command>ncks</command> to retrieve remote files without
automatically trying to print them.
See <ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref>, for more details.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="437"><acronym><acronymword>FTP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="438"><acronym><acronymword>SSH</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="439"><acronym><acronymword>msrcp</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="439"><acronym><acronymword>FTP</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="440"><acronym><acronymword>SSH</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="441"><acronym><acronymword>msrcp</acronymword></acronym></indexterm></cindex>
<para>Note that the remote retrieval features of <acronym><acronymword>NCO</acronymword></acronym> can always be
used to retrieve <emph>any</emph> file, including non-netCDF files, via
<command>SSH</command>, anonymous <acronym><acronymword>FTP</acronymword></acronym>, or <command>msrcp</command>.
Often this method is quicker than using a browser, or running an
<acronym><acronymword>FTP</acronymword></acronym> session from a shell window yourself.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="440">server</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="442">server</indexterm></cindex>
For example, say you want to obtain a <acronym><acronymword>JPEG</acronymword></acronym> file from a weather
server.
</para><example endspaces=" ">
@@ -3632,8 +3659,8 @@ When <command>ncks</command> attempts to read the local copy of <file>storm.jpg<
as a netCDF file, it fails and exits, leaving <file>storm.jpg</file> in
the current directory.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="441"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="442">server</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="443"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="444">server</indexterm></cindex>
<para>If your <acronym><acronymword>NCO</acronymword></acronym> is <acronym><acronymword>DAP</acronymword></acronym>-enabled (<pxref label="OPeNDAP"><xrefnodename>OPeNDAP</xrefnodename></pxref>),
then you may use <acronym><acronymword>NCO</acronymword></acronym> to retrieve any files (including netCDF,
<acronym><acronymword>HDF</acronymword></acronym>, etc.) served by an <acronym><acronymword>OPeNDAP</acronymword></acronym> server to your local
@@ -3656,26 +3683,26 @@ when your other preferred methods are not available locally.
</section>
<node name="File-Formats-and-Conversion" spaces=" "><nodename>File Formats and Conversion</nodename><nodenext spaces=" ">Large File Support</nodenext><nodeprev spaces=" ">Retaining Retrieved Files</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>File Formats and Conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="443"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="444">netCDF2</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="445">netCDF3</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="446">netCDF4</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="447"><code>NETCDF4_CLASSIC</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="448"><code>NETCDF4</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="449"><code>CLASSIC</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="450"><code>64BIT</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="451"><code>--3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="452"><code>-3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="453"><code>-4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="454"><code>-6</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="455"><code>-7</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="456"><code>--4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="457"><code>--6</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="458"><code>--7</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="459"><code>--netcdf4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="460"><code>--fl_fmt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="461"><code>--file_format</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="462"><code>--64bit</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="445"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="446">netCDF2</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="447">netCDF3</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="448">netCDF4</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="449"><code>NETCDF4_CLASSIC</code> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="450"><code>NETCDF4</code> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="451"><code>CLASSIC</code> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="452"><code>64BIT</code> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="453"><code>--3</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="454"><code>-3</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="455"><code>-4</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="456"><code>-6</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="457"><code>-7</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="458"><code>--4</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="459"><code>--6</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="460"><code>--7</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="461"><code>--netcdf4</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="462"><code>--fl_fmt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="463"><code>--file_format</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="464"><code>--64bit</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
@@ -3787,13 +3814,13 @@ Each method returns the information using slightly different terminology
that becomes easier to understand with practice.
</para>
<para>First, examine the first line of global metadata output by <samp>ncks -M</samp>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="463">netCDF3 classic file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="464">netCDF4 classic file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="465">netCDF4 file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="466">32-bit offset file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="467">64-bit offset file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="468"><command>ncks</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="469"><code>-M</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="465">netCDF3 classic file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="466">netCDF4 classic file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="467">netCDF4 file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="468">32-bit offset file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="469">64-bit offset file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="470"><command>ncks</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="471"><code>-M</code></indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">% ncks -M foo_3c.nc
Summary of foo_3c.nc: filetype = NC_FORMAT_CLASSIC, 0 groups ...
@@ -3806,14 +3833,14 @@ Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4, 0 groups ...
</pre></example>
<para>This method requires a netCDF4-enabled <acronym><acronymword>NCO</acronymword></acronym> version 3.9.0+
(i.e., from 2007 or later).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="470">extended file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="471">underlying file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="472"><code>NC_FORMAT_NC3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="473"><code>NC_FORMAT_NC_HDF5</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="474"><code>NC_FORMAT_NC_HDF4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="475"><code>NC_FORMAT_PNETCDF</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="476"><code>NC_FORMAT_DAP2</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="477"><code>NC_FORMAT_DAP4</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="472">extended file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="473">underlying file format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="474"><code>NC_FORMAT_NC3</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="475"><code>NC_FORMAT_NC_HDF5</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="476"><code>NC_FORMAT_NC_HDF4</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="477"><code>NC_FORMAT_PNETCDF</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="478"><code>NC_FORMAT_DAP2</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="479"><code>NC_FORMAT_DAP4</code></indexterm></cindex>
As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), <command>ncks</command> will
also print the extended or underlying format of the input file.
The extended filetype will be one of the six underlying formats that
@@ -3843,7 +3870,7 @@ Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4 (representation of \
has to alter the file.
</para>
<para>Second, query the file with <samp>ncdump -k</samp>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="478"><command>ncdump</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="480"><command>ncdump</command></indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">% ncdump -k foo_3c.nc
classic
@@ -3859,8 +3886,8 @@ netCDF-4
</para>
<para>The third option uses the POSIX-standard <command>od</command> (octal dump)
command:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="479"><command>od</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="480">octal dump</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="481"><command>od</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="482">octal dump</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">% od -An -c -N4 foo_3c.nc
C D F 001
@@ -3935,7 +3962,7 @@ we term autoconversion.
<para><acronym><acronymword>NCO</acronymword></acronym> employs three algorithms to downconvert netCDF4 to netCDF3:
</para><enumerate first="1" endspaces=" ">
<listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="481">autoconversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="483">autoconversion</indexterm></cindex>
<para>Autoconversion of atomic types:
Autoconversion automatically promotes <code>NC_UBYTE</code> to <code>NC_SHORT</code>,
and <code>NC_USHORT</code> to <code>NC_INT</code>.
@@ -3970,7 +3997,7 @@ If this limitation annoys or enrages you, please let us know by being
the squeaky wheel.
</para>
</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="482"><code>--fix_rec_dmn all</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="484"><code>--fix_rec_dmn all</code></indexterm></cindex>
<para>Convert multiple record dimensions to fixed-size dimensions.
Many netCDF4 and <acronym><acronymword>HDF5</acronymword></acronym> datasets have multiple unlimited
dimensions.
@@ -3985,7 +4012,7 @@ See <ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink
<samp>--fix_rec_dmn</samp> option.
</para>
</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="483">flattening</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="485">flattening</indexterm></cindex>
<para>Flattening (removal) of groups.
Many netCDF4 and <acronym><acronymword>HDF5</acronymword></acronym> datasets have group hierarchies.
Since a netCDF3 file may not have any groups, groups in the input file
@@ -4018,8 +4045,8 @@ If this feature would interest you, please let us know.
</section>
<node name="Large-File-Support" spaces=" "><nodename>Large File Support</nodename><nodenext spaces=" ">Subsetting Files</nodenext><nodeprev spaces=" ">File Formats and Conversion</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Large File Support</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="484">LFS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="485">Large File Support</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="486">LFS</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="487">Large File Support</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: none&linebreak;
@@ -4055,6 +4082,7 @@ versions of the netCDF standard.
build time.
</para>
<html endspaces=" ">
+<a name="x"></a> <!&textndash; http://nco.sf.net/nco.html#x &textndash;>
<a name="grp"></a> <!&textndash; http://nco.sf.net/nco.html#grp &textndash;>
<a name="var"></a> <!&textndash; http://nco.sf.net/nco.html#var &textndash;>
<a name="xcl"></a> <!&textndash; http://nco.sf.net/nco.html#xcl &textndash;>
@@ -4064,21 +4092,21 @@ build time.
</section>
<node name="Subsetting-Files" spaces=" "><nodename>Subsetting Files</nodename><nodenext spaces=" ">Subsetting Coordinate Variables</nodenext><nodeprev spaces=" ">Large File Support</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Subsetting Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="486">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="487">union</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="488">intersection</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="489">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="490">extraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="491"><code>-v <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="492"><code>--variable <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="493"><code>-g <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="494"><code>--grp <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="495"><code>--group <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="496"><code>-x</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="497"><code>--exclude</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="498"><code>--xcl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="499"><code>--unn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="500"><code>--union</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="488">subsetting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="489">union</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="490">intersection</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="491">exclusion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="492">extraction</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="493"><code>-v <var>var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="494"><code>--variable <var>var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="495"><code>-g <var>grp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="496"><code>--grp <var>grp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="497"><code>--group <var>grp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="498"><code>-x</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="499"><code>--exclude</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="500"><code>--xcl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="501"><code>--unn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="502"><code>--union</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Options <code>--unn</code>&linebreak;
Availability: <command>ncbo</command>, <command>nces</command>,
@@ -4134,12 +4162,12 @@ distinctions.
When learning this syntax it is helpful to keep in mind the similarity
between group hierarchies and directory structures.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="501"><command>mv</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="502"><command>cp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="503">recursion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="504">recursive</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="505">anchor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="506">anchoring</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="503"><command>mv</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="504"><command>cp</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="505">recursion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="506">recursive</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="507">anchor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="508">anchoring</indexterm></cindex>
<html endspaces=" ">
<a name="rcr"></a> <!&textndash; http://nco.sf.net/nco.html#rcr &textndash;>
<a name="recursion"></a> <!&textndash; http://nco.sf.net/nco.html#recursion &textndash;>
@@ -4216,12 +4244,12 @@ The fifth command is a special case of the fourth command.
<a name="union"></a> <!&textndash; http://nco.sf.net/nco.html#union &textndash;>
<a name="intersection"></a> <!&textndash; http://nco.sf.net/nco.html#intersection &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="507">union</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="508">intersection</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="509"><code>--unn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="510"><code>--union</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="511"><code>--nsx</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="512"><code>--intersection</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="509">union</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="510">intersection</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="511"><code>--unn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="512"><code>--union</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="513"><code>--nsx</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="514"><code>--intersection</code></indexterm></cindex>
<para>As mentioned above, both <samp>-v</samp> and <samp>-g</samp> options may be
specified simultaneously and <acronym><acronymword>NCO</acronymword></acronym> will, by default, extract the
intersection of the lists, i.e., the specified variables found in the
@@ -4268,7 +4296,7 @@ As discussed below, the group and variable specifications may be comma
separated lists of regular expressions for added control over
subsetting.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="513">memory requirements</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="515">memory requirements</indexterm></cindex>
<para>Remember, if averaging or concatenating large files stresses your
systems memory or disk resources, then the easiest solution is often to
subset (with <samp>-g</samp> and/or <samp>-v</samp>) to retain only the most
@@ -4298,14 +4326,14 @@ indicates that <emph>only</emph> user-defined variables should be output.
<a name="rx"></a> <!&textndash; http://nco.sf.net/nco.html#rx &textndash;>
<a name="wildcarding"></a> <!&textndash; http://nco.sf.net/nco.html#wildcarding &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="514">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="515">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="516">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="517">wildcards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="518"><command>grep -E</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="519"><command>egrep</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="520"><command>ncatted</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="521"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="516">extended regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="517">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="518">pattern matching</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="519">wildcards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="520"><command>grep -E</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="521"><command>egrep</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="522"><command>ncatted</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="523"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
<para>Regular expressions the syntax that <acronym><acronymword>NCO</acronymword></acronym> use pattern-match
object names in netCDF file against user requests.
The user can select all variables beginning with the string <samp>DST</samp>
@@ -4327,8 +4355,8 @@ to <command>ncatted</command> may contain <dfn>extended regular expressions</dfn
As of <acronym><acronymword>NCO</acronymword></acronym> 4.2.4 (November, 2012), group name arguments
to the <samp>-g</samp> switch may contain <dfn>extended regular expressions</dfn>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="522"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="523"><code>regex</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="524"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="525"><code>regex</code></indexterm></cindex>
<para>Because of its wide availability, <acronym><acronymword>NCO</acronymword></acronym> uses the <acronym><acronymword>POSIX</acronymword></acronym>
regular expression library <code>regex</code>.
Regular expressions of arbitary complexity may be used.
@@ -4336,11 +4364,11 @@ Since netCDF variable names are relatively simple constructs, only a
few varieties of variable wildcards are likely to be useful.
For convenience, we define the most useful pattern matching operators
here:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="524"><code>.</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="525"><code>$</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="526"><code>^</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="527"><code>?</code> (filename expansion)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="528"><code>*</code> (filename expansion)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="526"><code>.</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="527"><code>$</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="528"><code>^</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="529"><code>?</code> (filename expansion)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="530"><code>*</code> (filename expansion)</indexterm></cindex>
</para><table commandarg="samp" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="samp">^</itemformat></item>
</tableterm><tableitem><para>Matches the beginning of a string
@@ -4351,10 +4379,10 @@ here:
</para></tableitem></tableentry></table>
<noindent></noindent>
<para>The most useful repetition and combination operators are
-<cindex index="cp" spaces=" "><indexterm index="cp" number="529"><code>?</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="530"><code>*</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="531"><code>+</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="532"><code>|</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="531"><code>?</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="532"><code>*</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="533"><code>+</code> (wildcard character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="534"><code>|</code> (wildcard character)</indexterm></cindex>
</para><table commandarg="samp" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="samp">?</itemformat></item>
</tableterm><tableitem><para>The preceding regular expression is optional and matched at most once
@@ -4413,11 +4441,11 @@ extended regular expressions which <acronym><acronymword>NCO</acronymword></acro
<a name="globbing"></a> <!&textndash; http://nco.sf.net/nco.html#globbing &textndash;>
<a name="glb"></a> <!&textndash; http://nco.sf.net/nco.html#glb &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="533">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="534">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="535"><command>bash</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="536"><command>csh</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="537">quotes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="535">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="536">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="537"><command>bash</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="538"><command>csh</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="539">quotes</indexterm></cindex>
<para>One must be careful to protect any special characters in the regular
expression specification from being interpreted (globbed) by the shell.
This is accomplish by enclosing special characters within single or
@@ -4444,13 +4472,13 @@ filename expansion (globbing).
</section>
<node name="Subsetting-Coordinate-Variables" spaces=" "><nodename>Subsetting Coordinate Variables</nodename><nodenext spaces=" ">Group Path Editing</nodenext><nodeprev spaces=" ">Subsetting Files</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Subsetting Coordinate Variables</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="538">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="539"><code>-C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="540"><code>-c</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="541"><code>--no-coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="542"><code>--no-crd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="543"><code>--coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="544"><code>--crd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="540">subsetting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="541"><code>-C</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="542"><code>-c</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="543"><code>--no-coords</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="544"><code>--no-crd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="545"><code>--coords</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="546"><code>--crd</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
@@ -4474,7 +4502,7 @@ automatically specifying that <emph>all</emph> coordinate variables in the
<var>input-files</var> should appear in the <var>output-file</var>.
Thus <samp>-c</samp> allows the user to select all the coordinate variables
without having to know their names.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="545"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="547"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
As of <acronym><acronymword>NCO</acronymword></acronym> version 3.9.6 (January, 2009)
both <samp>-c</samp> and <samp>-C</samp> honor the <acronym><acronymword>CF</acronymword></acronym> <code>coordinates</code>
convention described in <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref>.
@@ -4488,8 +4516,8 @@ convention described in <ref label="CF-Conventions"><xrefnodename>CF Conventions
</section>
<node name="Group-Path-Editing" spaces=" "><nodename>Group Path Editing</nodename><nodenext spaces=" ">C and Fortran Index Conventions</nodenext><nodeprev spaces=" ">Subsetting Coordinate Variables</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Group Path Editing</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="546"><code>-G <var>gpe_dsc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="547"><code>--gpe <var>gpe_dsc</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="548"><code>-G <var>gpe_dsc</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="549"><code>--gpe <var>gpe_dsc</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Options <code>-G <var>gpe_dsc</var></code>&linebreak;
Availability: <command>ncbo</command>, <command>ncecat</command>, <command>nces</command>,
@@ -4516,7 +4544,7 @@ the following order:&linebreak;
<table commandarg="var" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="var">grp_pth</itemformat></item>
</tableterm><tableitem><para>Group Path.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="548">group path</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="550">group path</indexterm></cindex>
This (optional) component specifies the output group path that should be
appended after any editing (i.e., deletion or truncation) of the input
path is performed.
@@ -4545,11 +4573,11 @@ positive-definite.
<a name="delete"></a> <!&textndash; http://nco.sf.net/nco.html#delete &textndash;>
<a name="truncate"></a> <!&textndash; http://nco.sf.net/nco.html#truncate &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="549"><code>&arobase;</code> (separator character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="550"><code>:</code> (separator character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="551">delete (groups)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="552">truncate (groups)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="553">flatten (groups)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="551"><code>&arobase;</code> (separator character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="552"><code>:</code> (separator character)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="553">delete (groups)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="554">truncate (groups)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="555">flatten (groups)</indexterm></cindex>
<para><acronym><acronymword>GPE</acronymword></acronym> has three editing modes: Delete, Truncate, and
Flatten.
Select one of <acronym><acronymword>GPE</acronymword></acronym>&textrsquo;s three editing modes by supplying a
@@ -4656,10 +4684,10 @@ ncks -G g1:-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/g1/v1
<a name="mv"></a> <!&textndash; http://nco.sf.net/nco.html#mv &textndash;>
<a name="move"></a> <!&textndash; http://nco.sf.net/nco.html#move &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="554">move groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="555">groups, moving</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="556">rename groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="557">groups, renaming</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="556">move groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="557">groups, moving</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="558">rename groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="559">groups, renaming</indexterm></cindex>
<para>Until fall 2013 (netCDF version 4.3.1-pre1), netCDF contained no library
function for renaming groups, and therefore <command>ncrename</command> cannot
rename groups.
@@ -4713,8 +4741,8 @@ all other groups (e.g., <code>ecmwf</code>, <code>giss</code>).
<a name="disaggregate"></a> <!&textndash; http://nco.sf.net/nco.html#disaggregate &textndash;>
<a name="ncdismember"></a> <!&textndash; http://nco.sf.net/nco.html#ncdismember &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="558">disaggregate</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="559">dismember</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="560">disaggregate</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="561">dismember</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="5" mergedindex="cp">ncdismember</indexterm></findex>
<para>Let us show how to completely disaggregate (or, more memorably)
<emph>dismember</emph> a hierarchical dataset.
@@ -4755,6 +4783,8 @@ drc_out="${DATA}/nco/tmp" # [sng] Output directory
flg_cf='0' # [flg] Perform CF-compliance check
cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
+# Use single quotes to pass multiple arguments to opt=${5}
+# Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
# Command line argument option parsing
if [ -n "${1}" ]; then fl_in=${1}; fi
@@ -4779,7 +4809,9 @@ for grp_in in ${grp_lst} ; do
# Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
# Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc
+ cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
+ # Use eval in case ${opt} contains multiple arguments separated by whitespace
+ eval ${cmd}
if [ ${flg_cf} = 'cf' ]; then
# cfchecker needs Conventions <= 1.5
ncatted -h -a Conventions,global,o,c,"CF-${cf_vrs}" ${drc_out}/${grp_out}.nc
@@ -4824,12 +4856,12 @@ as <code>NC_STRING</code> and <code>NC_UBYTE</code>) to corresponding netCDF3
atomic types (<code>NC_CHAR</code> and <code>NC_SHORT</code>) when the output format
is netCDF3.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="560"><acronym><acronymword>CF</acronymword></acronym> compliance checker</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="562"><acronym><acronymword>CF</acronymword></acronym> compliance checker</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="6" mergedindex="cp">cfchecker</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="7" mergedindex="cp">ncdismember</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="561">compliance checker</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="562">Martin Schultz</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="563">Michael Decker</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="563">compliance checker</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="564">Martin Schultz</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="565">Michael Decker</indexterm></cindex>
<para>One application of dismembering is to check the <acronym><acronymword>CF</acronymword></acronym>-compliance of each
group in a file.
When invoked with the optional third argumnt <samp>cf</samp>,
@@ -4942,12 +4974,12 @@ LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
./configure --enable-hdf4 --enable-hdf4-file-tests
make && make check && make installas
-# 4. NCO version 4.4.3. No RPM for this version. Must install by hand.
+# 4. NCO version 4.4.4. No RPM for this version. Must install by hand.
# Earlier versions of NCO are relatively useless for ncdismember
cd ${DATA}/tmp
-wget http://nco.sourceforge.net/src/nco-4.4.3.tar.gz .
-tar xvzf nco-4.4.3.tar.gz
-cd nco-4.4.3
+wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
+tar xvzf nco-4.4.4.tar.gz
+cd nco-4.4.4
./configure --prefix=${NCODIR}
make && make install
@@ -5004,11 +5036,11 @@ EOF
</section>
<node name="C-and-Fortran-Index-Conventions" spaces=" "><nodename>C and Fortran Index Conventions</nodename><nodenext spaces=" ">Hyperslabs</nodenext><nodeprev spaces=" ">Group Path Editing</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>C and Fortran Index conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="564">index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="565">Fortran index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="566">C index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="567"><code>-F</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="568"><code>--fortran</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="566">index convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="567">Fortran index convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="568">C index convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="569"><code>-F</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="570"><code>--fortran</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5016,7 +5048,7 @@ EOF
Short options: <samp>-F</samp>&linebreak;
Long options: <samp>--fortran</samp>&linebreak;
</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="569">I/O</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="571">I/O</indexterm></cindex>
<para>The <samp>-F</samp> switch changes <acronym><acronymword>NCO</acronymword></acronym> to read and write with
the Fortran index convention.
By default, <acronym><acronymword>NCO</acronymword></acronym> uses C-style (0-based) indices for all I/O.
@@ -5026,17 +5058,17 @@ dimensions are ordered from slowest (inner-most) to fastest
In Fortran, indices count <w>from 1</w> (rather <w>than 0</w>), and
dimensions are ordered from fastest (inner-most) to slowest
(outer-most) varying.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="570">transpose</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="572">transpose</indexterm></cindex>
Hence <w>C and</w> Fortran data storage conventions represent mathematical
transposes of eachother.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="571">record variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="573">record variable</indexterm></cindex>
Note that record variables contain the record dimension as the most
slowly varying dimension.
See <ref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></ref> for techniques
to re-order (including transpose) dimensions and to reverse data
storage order.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="572">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="574">record dimension</indexterm></cindex>
<para>Consider a file <file>85.nc</file> containing <w>12 months</w> of data in the
record dimension <code>time</code>.
The following hyperslab operations produce identical results, a
@@ -5067,12 +5099,12 @@ lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
</section>
<node name="Hyperslabs" spaces=" "><nodename>Hyperslabs</nodename><nodenext spaces=" ">Stride</nodenext><nodeprev spaces=" ">C and Fortran Index Conventions</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Hyperslabs </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="573">hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="574">dimension limits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="575">coordinate limits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="576"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="577"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="578"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="575">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="576">dimension limits</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="577">coordinate limits</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="578"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="579"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="580"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5109,7 +5141,7 @@ ncks -F -d lon,1,2 in.nc out.nc
ncks -d lon,1,2 in.nc out.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="579">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="581">stride</indexterm></cindex>
<para>Coordinate values should be specified using real notation with a decimal
point required in the value, whereas dimension indices are specified
using integer notation without a decimal point.
@@ -5166,13 +5198,13 @@ ncks -F -d lon,-3, in.nc out.nc
instead of simply <code>.</code> in order to make obvious the selection of
hyperslab elements based on coordinate value rather than index.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="580"><code>NC_CHAR</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="582"><code>NC_CHAR</code></indexterm></cindex>
<para>User-specified coordinate limits are promoted to double-precision values
while searching for the indices which bracket the range.
Thus, hyperslabs on coordinates of type <code>NC_CHAR</code> are computed
numerically rather than lexically, so the results are unpredictable.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="581">wrapped coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="583">wrapped coordinates</indexterm></cindex>
<para>The relative magnitude of <var>min</var> and <var>max</var> indicate to the
operator whether to expect a <dfn>wrapped coordinate</dfn>
(<pxref label="Wrapped-Coordinates"><xrefnodename>Wrapped Coordinates</xrefnodename></pxref>), such as longitude.
@@ -5210,10 +5242,10 @@ This option may be specified more than once in a single command
</section>
<node name="Stride" spaces=" "><nodename>Stride</nodename><nodenext spaces=" ">Record Appending</nodenext><nodeprev spaces=" ">Hyperslabs</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Stride </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="582">stride</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="583"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="584"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="585"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="584">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="585"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="586"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="587"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5266,8 +5298,8 @@ data are stored in records <w>2, 14, &dots; 50</w> so the desired
Without the <var>stride</var> option, the procedure is very awkward.
One could use <command>ncks</command> five times and then use <command>ncrcat</command> to
concatenate the resulting files together:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="586">Bourne Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="587">C Shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="588">Bourne Shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="589">C Shell</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">for idx in 02 14 26 38 50; do # Bourne Shell
ncks -d time,${idx} 8501_8912.nc foo.${idx}
@@ -5301,9 +5333,9 @@ ncrcat -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8503_8903.nc
</section>
<node name="Record-Appending" spaces=" "><nodename>Record Appending</nodename><nodenext spaces=" ">Subcycle</nodenext><nodeprev spaces=" ">Stride</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Record Appending</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="588">record append</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="589"><code>--rec_apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="590"><code>--record_append</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="590">record append</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="591"><code>--rec_apn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="592"><code>--record_append</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncra</command>, <command>ncrcat</command>&linebreak;
Short options: None&linebreak;
@@ -5348,7 +5380,7 @@ If the record variable represents time in these files, then the
values in <file>fl_1.nc</file> precede those in <file>fl_2.nc</file>, so why
do the files appear in the reverse order on the command line?
<file>fl_1.nc</file> is the last file named because it is the pre-existing
-output file to which we are appending all of the other input files
+output file to which we will append all the other input files listed
(in this case only <file>fl_2.nc</file>).
The contents of <file>fl_1.nc</file> are completely preserved, and only
values in <file>fl_2.nc</file> (and any other input files) are copied.
@@ -5379,15 +5411,15 @@ We recommend users try to understand the safety trade-offs involved.
</section>
<node name="Subcycle" spaces=" "><nodename>Subcycle</nodename><nodenext spaces=" ">Multislabs</nodenext><nodeprev spaces=" ">Record Appending</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Subcycle</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="591">duration</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="592">sub-cycle</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="593">subcycle</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="594">MRO</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="595">Multi-Record Operator</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="596"><code>--mro</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="597"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="598"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="599"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],<var>subcycle</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="593">duration</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="594">sub-cycle</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="595">subcycle</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="596">MRO</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="597">Multi-Record Operator</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="598"><code>--mro</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="599"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="600"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="601"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],<var>subcycle</var>]</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncra</command>, <command>ncrcat</command>&linebreak;
Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>&linebreak;
@@ -5485,15 +5517,15 @@ records.
</section>
<node name="Multislabs" spaces=" "><nodename>Multislabs</nodename><nodenext spaces=" ">Wrapped Coordinates</nodenext><nodeprev spaces=" ">Subcycle</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Multislabs </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="600">multislab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="601">multi-hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="602"><acronym><acronymword>MSA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="603"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="604"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="605"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="606"><code>--msa</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="607"><code>--msa_usr_rdr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="608"><code>--msa_user_order</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="602">multislab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="603">multi-hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="604"><acronym><acronymword>MSA</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="605"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="606"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="607"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="608"><code>--msa</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="609"><code>--msa_usr_rdr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="610"><code>--msa_user_order</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5546,7 +5578,7 @@ to specify the multislab.
the sizes of the multislabs.
This can be used to extend and or pad coordinate grids.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="609">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="611">stride</indexterm></cindex>
<para>Users may specify redundant ranges of indices in a multislab, e.g.,
</para><example endspaces=" ">
<pre xml:space="preserve">ncks -d lon,0,4 -d lon,2,9,2 in.nc out.nc
@@ -5563,7 +5595,7 @@ the <var>stride</var> option only supports index-based hyper-slabbing.
</para>
<para>Multislabs are more efficient than the alternative of sequentially
performing hyperslab operations and concatenating the results.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="610">I/O</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="612">I/O</indexterm></cindex>
This is because <acronym><acronymword>NCO</acronymword></acronym> employs a novel multislab algorithm to
minimize the number of I/O operations when retrieving irregularly spaced
data from disk.
@@ -5683,11 +5715,11 @@ hyperslabs makes this clearer.
</section>
<node name="Wrapped-Coordinates" spaces=" "><nodename>Wrapped Coordinates</nodename><nodenext spaces=" ">Auxiliary Coordinates</nodenext><nodeprev spaces=" ">Multislabs</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Wrapped Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="611">wrapped coordinates</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="612">longitude</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="613"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="614"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="615"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="613">wrapped coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="614">longitude</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="615"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="616"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="617"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncks</command>&linebreak;
Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
@@ -5760,13 +5792,13 @@ values (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref
</section>
<node name="Auxiliary-Coordinates" spaces=" "><nodename>Auxiliary Coordinates</nodename><nodenext spaces=" ">UDUnits Support</nodenext><nodeprev spaces=" ">Wrapped Coordinates</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Auxiliary Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="616"><code>-X</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="617"><code>--auxiliary</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="618"><code>standard_name</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="619"><code>coordinates</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="620"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="621"><code>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="622"><code>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="618"><code>-X</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="619"><code>--auxiliary</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="620"><code>standard_name</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="621"><code>coordinates</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="622"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="623"><code>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="624"><code>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5792,7 +5824,7 @@ Cells that contain a value within the user-specified range
[<var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var>] are
included in the output hyperslab.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="623">cell-based grids</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="625">cell-based grids</indexterm></cindex>
<para>A cell-based grid collapses the horizontal spatial information
(latitude and longitude) and stores it along a one-dimensional
coordinate that has a one-to-one mapping to both latitude and longitude
@@ -5904,13 +5936,13 @@ to avoid confusion.
</section>
<node name="UDUnits-Support" spaces=" "><nodename>UDUnits Support</nodename><nodenext spaces=" ">Rebasing Time Coordinate</nodenext><nodeprev spaces=" ">Auxiliary Coordinates</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>UDUnits Support </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="624">UDUnits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="625">Unidata</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="626"><code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="627">attribute, <code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="628"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="629"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="630"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="626">UDUnits</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="627">Unidata</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="628"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="629">attribute, <code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="630"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="631"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="632"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
@@ -5932,7 +5964,7 @@ may become required in a future version of <acronym><acronymword>NCO</acronymwor
</para>
<para>Two examples suffice to demonstrate the power and convenience of UDUnits
support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="631">MKS units</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="633">MKS units</indexterm></cindex>
First, consider extraction of a variable containing non-record
coordinates with physical dimensions stored in MKS units.
In the following example, the user extracts all wavelengths
@@ -5943,7 +5975,7 @@ very frequently used in visible spectroscopy, microns:
wvl[0]=5e-07 meter
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="632"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="634"><code>units</code></indexterm></cindex>
<para>The hyperslab returns the correct values because the <var>wvl</var> variable
is stored on disk with a length dimension that UDUnits recognizes in the
<code>units</code> attribute.
@@ -5963,7 +5995,7 @@ because each hyperslab argument contains text characters and non-initial
spaces.
Third, <acronym><acronymword>NCO</acronymword></acronym> determines whether the <var>wvl</var> is dimensioned
with a coordinate variable that has a <code>units</code> attribute.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="633">coordinate variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="635">coordinate variable</indexterm></cindex>
In this case, <var>wvl</var> itself is a coordinate variable.
The value of its <code>units</code> attribute is <code>meter</code>.
Thus <var>wvl</var> passes this test so UDUnits conversion is attempted.
@@ -5985,8 +6017,8 @@ At this point, <acronym><acronymword>NCO</acronymword></acronym> can perform a c
the same algorithm as if the user had specified the hyperslab without
requesting units conversion.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="634"><code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="635"><code>time</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="636"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="637"><code>time</code></indexterm></cindex>
<para>The translation and dimensional innterpretation of time coordinates
shows a more powerful, and probably more common, UDUnits application.
In this example, the user prints all data between <w>4 PM</w> and <w>7 PM</w>
@@ -5998,8 +6030,8 @@ since the year 1900:
time_udunits[1]=876018 hours since 1900-01-01 00:00:0.0
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="636">stride</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="637">whitespace</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="638">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="639">whitespace</indexterm></cindex>
<para>Here, the user invokes the stride (<pxref label="Stride"><xrefnodename>Stride</xrefnodename></pxref>) capability to obtain
every other timeslice.
This is possible because the UDUnits feature is additive, not
@@ -6015,7 +6047,7 @@ time period spread across multiple input files
<noindent></noindent>
<para>Note that there is no excess whitespace before or after the individual
elements of the <samp>-d</samp> argument.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="638">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="640">shell</indexterm></cindex>
This is important since, as far as the shell knows, <samp>-d</samp> takes
only <emph>one</emph> command-line argument.
Parsing this argument into its component
@@ -6049,8 +6081,8 @@ export UDUNITS2_XML_PATH='/unusual/location/share/udunits/udunits2.xml'
<para>This run-time flexibility can enable the full functionality of
pre-built binaries on machines with libraries in different locations.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="639">Climate and Forecast Metadata Convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="640"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="641">Climate and Forecast Metadata Convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="642"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
<para>The <uref><urefurl>http://www.unidata.ucar.edu/packages/udunits</urefurl><urefdesc spaces=" ">UDUnits</urefdesc></uref>
package documentation describes the supported formats of time
dimensions.
@@ -6110,8 +6142,8 @@ data:
<para><samp>ncks -v lon_cal -d lon_cal,'1964-3-1 0:00:0.0','1964-3-4 00:00:0.0'</samp>
results in <code>lon_cal=1,2,3,4</code>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="641">MKS units</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="642">God</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="643">MKS units</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="644">God</indexterm></cindex>
<para>netCDF variables should always be stored with MKS (i.e., God&textrsquo;s) units,
so that application programs may assume MKS dimensions apply to all
input variables.
@@ -6194,9 +6226,9 @@ but also any bounds associated with the record coordinate (e.g.,
</section>
<node name="Multiple-Record-Dimensions" spaces=" "><nodename>Multiple Record Dimensions</nodename><nodenext spaces=" ">Missing Values</nodenext><nodeprev spaces=" ">Rebasing Time Coordinate</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Multiple Record Dimensions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="643">netCDF4</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="644"><code>--mrd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="645"><code>--multiple_record_dimensions</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="645">netCDF4</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="646"><code>--mrd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="647"><code>--multiple_record_dimensions</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability:
<command>ncecat</command>, <command>ncpdq</command>
@@ -6253,11 +6285,11 @@ Use <samp>--mrd</samp> to override this.
</section>
<node name="Missing-Values" spaces=" "><nodename>Missing Values</nodename><nodenext spaces=" ">Chunking</nodenext><nodeprev spaces=" ">Multiple Record Dimensions</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Missing values</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="646">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="647">data, missing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="648">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="649"><code>missing_value</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="650"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="648">missing values</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="649">data, missing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="650">averaging data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="651"><code>missing_value</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="652"><code>_FillValue</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
@@ -6267,7 +6299,7 @@ Short options: None&linebreak;
<para>The phrase <dfn>missing data</dfn> refers to data points that are missing,
invalid, or for any reason not intended to be arithmetically processed
in the same fashion as valid data.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="651">arithmetic operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="653">arithmetic operators</indexterm></cindex>
The <acronym><acronymword>NCO</acronymword></acronym> arithmetic operators attempt to handle missing data in
an intelligent fashion.
There are four steps in the <acronym><acronymword>NCO</acronymword></acronym> treatment of missing data:
@@ -6332,7 +6364,7 @@ If <var>var_type</var> equals <var>att_type</var> then <acronym><acronymword>NCO
straightforwardly compares each value of <var>var</var> to
<var>_FillValue</var> to determine which elements of <var>var</var> are to be
treated as missing data.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="652">C language</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="654">C language</indexterm></cindex>
If not, then <acronym><acronymword>NCO</acronymword></acronym> converts <var>_FillValue</var> from
<var>att_type</var> to <var>var_type</var> by using the implicit conversion rules
<w>of C</w>, or, if <var>att_type</var> is <code>NC_CHAR</code>
@@ -6341,7 +6373,7 @@ uses <var>att_type</var> = <code>NC_CHAR</code> and <var>_FillValue</var> =
<samp>-99999.</samp>.
</para></footnote>, by typecasting the results of the <w>C function</w>
<code>strtod(<var>_FillValue</var>)</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="653"><command>ncatted</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="655"><command>ncatted</command></indexterm></cindex>
You may use the <acronym><acronymword>NCO</acronymword></acronym> operator <command>ncatted</command> to change the
<code>_FillValue</code> attribute and all data whose data is
<var>_FillValue</var> to a new value
@@ -6350,11 +6382,11 @@ You may use the <acronym><acronymword>NCO</acronymword></acronym> operator <comm
</listitem><listitem>
<para>Identifying missing data during arithmetic operations.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="654">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="655">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="656">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="657">execution time</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="658">arithmetic operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="656">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="657">operator speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="658">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="659">execution time</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="660">arithmetic operators</indexterm></cindex>
<para>When an <acronym><acronymword>NCO</acronymword></acronym> arithmetic operator processes a variable <var>var</var>
with a <code>_FillValue</code> attribute, it compares each value of
<var>var</var> to <var>_FillValue</var> before performing an operation.
@@ -6374,11 +6406,11 @@ valid or not.
</listitem><listitem>
<para>Treatment of any data identified as missing in arithmetic operators.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="659"><command>nces</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="660"><command>ncra</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="661"><command>ncwa</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="662"><command>ncbo</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="663"><command>ncflint</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="661"><command>nces</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="662"><command>ncra</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="663"><command>ncwa</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="664"><command>ncbo</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="665"><command>ncflint</command></indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> averagers (<command>ncra</command>, <command>nces</command>, <command>ncwa</command>)
do not count any element with the value <var>_FillValue</var> towards the
average.
@@ -6422,17 +6454,17 @@ important information from being lost.
</section>
<node name="Chunking" spaces=" "><nodename>Chunking</nodename><nodenext spaces=" ">Deflation</nodenext><nodeprev spaces=" ">Missing Values</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Chunking</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="664"><code>--cnk_byt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="665"><code>--cnk_dmn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="666"><code>--cnk_map</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="667"><code>--cnk_plc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="668"><code>--cnk_scl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="669"><code>--chunk_byte</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="670"><code>--chunk_dimension</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="671"><code>--chunk_map</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="672"><code>--chunk_policy</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="673"><code>--chunk_scalar</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="674">chunking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="666"><code>--cnk_byt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="667"><code>--cnk_dmn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="668"><code>--cnk_map</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="669"><code>--cnk_plc</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="670"><code>--cnk_scl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="671"><code>--chunk_byte</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="672"><code>--chunk_dimension</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="673"><code>--chunk_map</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="674"><code>--chunk_policy</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="675"><code>--chunk_scalar</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="676">chunking</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
@@ -6457,9 +6489,9 @@ Dataset chunking issues are described in detail
and
<uref><urefurl>http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes</urefurl><urefdesc>here</urefdesc></uref>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="675">chunking policy</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="676">chunking map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="677">chunksize</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="677">chunking policy</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="678">chunking map</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="679">chunksize</indexterm></cindex>
<para>The <acronym><acronymword>NCO</acronymword></acronym> chunking implementation is designed to be flexible.
Users control three aspects of the chunking implementation.
These are known as the <dfn>chunking policy</dfn>, <dfn>chunking map</dfn>,
@@ -6467,9 +6499,9 @@ and <dfn>chunksize</dfn>.
The first two are high-level mechanisms that apply to an entire file
and all variables and dimensions, while the third allows per-dimension
specification of parameters.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="678">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="680">hyperslab</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="10" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="679">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="681">packing</indexterm></cindex>
The implementation is a hybrid of the <command>ncpdq</command> packing policies
(<pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>), and the hyperslab
specifications (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
@@ -6482,21 +6514,21 @@ performance.
(or its long option equivalents, <samp>--cnk_plc</samp> and
<samp>--chunk_policy</samp>) and its <var>cnk_plc</var> argument.
Five chunking policies are currently implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="680"><samp>all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="681"><samp>g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="682"><samp>g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="683"><samp>xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="684"><samp>xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="685"><samp>cnk_all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="686"><samp>cnk_g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="687"><samp>cnk_g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="688"><samp>cnk_xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="689"><samp>cnk_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="690"><samp>plc_all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="691"><samp>plc_g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="692"><samp>plc_g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="693"><samp>plc_xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="694"><samp>plc_xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="682"><samp>all</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="683"><samp>g2d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="684"><samp>g3d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="685"><samp>xpl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="686"><samp>xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="687"><samp>cnk_all</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="688"><samp>cnk_g2d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="689"><samp>cnk_g3d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="690"><samp>cnk_xpl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="691"><samp>cnk_xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="692"><samp>plc_all</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="693"><samp>plc_g2d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="694"><samp>plc_g3d</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="695"><samp>plc_xpl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="696"><samp>plc_xst</samp></indexterm></cindex>
</para><table commandarg="dfn" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk All Variables [<emph>default</emph>]</itemformat></item>
</tableterm><tableitem><para>Definition: Chunk all variables possible.
@@ -6544,12 +6576,12 @@ Multiple equivalent options are provided to satisfy disparate needs
and tastes of <acronym><acronymword>NCO</acronymword></acronym> users working with scripts and from the
command line.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="695">chunking map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="696">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="697"><var>cnk_map</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="698"><code>-M <var>cnk_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="699"><code>--cnk_map <var>cnk_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="700"><code>--map <var>cnk_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="697">chunking map</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="698">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="699"><var>cnk_map</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="700"><code>-M <var>cnk_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="701"><code>--cnk_map <var>cnk_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="702"><code>--map <var>cnk_map</var></code></indexterm></cindex>
<para>The chunking algorithms must know the chunksizes of each dimension of
each variable to be chunked.
The correspondence between the input variable shape and the chunksizes
@@ -6558,26 +6590,26 @@ The user specifies the desired chunking map with the <samp>-M</samp> switch
(or its long option equivalents, <samp>--cnk_map</samp> and
<samp>--chunk_map</samp>) and its <var>cnk_map</var> argument.
Four chunking maps are currently implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="701"><samp>dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="702"><samp>scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="703"><samp>prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="704"><samp>lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="705"><samp>rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="706"><samp>xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="707"><samp>rew</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="708"><samp>cnk_dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="709"><samp>cnk_scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="710"><samp>cnk_prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="711"><samp>cnk_lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="712"><samp>cnk_rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="713"><samp>cnk_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="714"><samp>map_dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="715"><samp>map_scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="716"><samp>map_prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="717"><samp>map_lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="718"><samp>map_rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="719"><samp>map_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="720">Chris Barker</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="703"><samp>dmn</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="704"><samp>scl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="705"><samp>prd</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="706"><samp>lfp</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="707"><samp>rd1</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="708"><samp>xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="709"><samp>rew</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="710"><samp>cnk_dmn</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="711"><samp>cnk_scl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="712"><samp>cnk_prd</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="713"><samp>cnk_lfp</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="714"><samp>cnk_rd1</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="715"><samp>cnk_xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="716"><samp>map_dmn</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="717"><samp>map_scl</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="718"><samp>map_prd</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="719"><samp>map_lfp</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="720"><samp>map_rd1</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="721"><samp>map_xst</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="722">Chris Barker</indexterm></cindex>
</para><table commandarg="dfn" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Equals Dimension Size [<emph>default</emph>]</itemformat></item>
</tableterm><tableitem><para>Definition: Chunksize defaults to dimension size.
@@ -6687,7 +6719,7 @@ ncwa -O -4 -D 4 -a time --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
--cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="721">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="723">record dimension</indexterm></cindex>
<para>It is appropriate to conclude by informing users about an aspect of
chunking that may not be expected.
Three types of variables are <emph>always</emph> chunked: Record variables,
@@ -6713,12 +6745,12 @@ variables.
</section>
<node name="Deflation" spaces=" "><nodename>Deflation</nodename><nodenext spaces=" ">MD5 digests</nodenext><nodeprev spaces=" ">Chunking</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Deflation</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="722"><code>-L</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="723"><code>--deflate</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="724"><code>--dfl_lvl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="725">Lempel-Ziv deflation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="726">compression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="727">deflation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="724"><code>-L</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="725"><code>--deflate</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="726"><code>--dfl_lvl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="727">Lempel-Ziv deflation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="728">compression</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="729">deflation</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
@@ -6776,15 +6808,15 @@ ncpdq -4 -L 9 in.nc out.nc # Deflated packing (~80% compression)
</section>
<node name="MD5-digests" spaces=" "><nodename>MD5 digests</nodename><nodenext spaces=" ">Buffer sizes</nodenext><nodeprev spaces=" ">Deflation</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>MD5 digests</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="728"><code>--md5_digest</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="729"><code>--md5_dgs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="730"><code>--md5_wrt_att</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="731"><code>--md5_write_attribute</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="732">integrity</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="733">security</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="734">digest</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="735">hash</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="736">MD5 digest</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="730"><code>--md5_digest</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="731"><code>--md5_dgs</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="732"><code>--md5_wrt_att</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="733"><code>--md5_write_attribute</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="734">integrity</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="735">security</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="736">digest</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="737">hash</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="738">MD5 digest</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability:
<command>ncecat</command>, <command>ncks</command>, <command>ncrcat</command>&linebreak;
@@ -6879,12 +6911,12 @@ We welcome feedback and suggestions from users.
</section>
<node name="Buffer-sizes" spaces=" "><nodename>Buffer sizes</nodename><nodenext spaces=" ">RAM disks</nodenext><nodeprev spaces=" ">MD5 digests</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Buffer sizes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="737"><code>--bfr_sz_hnt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="738">Buffer sizes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="739">File buffers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="740"><command>stat() system call</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="741">I/O block size</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="742">System calls</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="739"><code>--bfr_sz_hnt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="740">Buffer sizes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="741">File buffers</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="742"><command>stat() system call</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="743">I/O block size</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="744">System calls</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: &linebreak;
@@ -6924,19 +6956,19 @@ ncks: INFO nc__open() opened file with buffer size = 2097152 bytes
</section>
<node name="RAM-disks" spaces=" "><nodename>RAM disks</nodename><nodenext spaces=" ">Packed data</nodenext><nodeprev spaces=" ">Buffer sizes</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>RAM disks</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="743"><code>--ram_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="744"><code>--create_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="745"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="746"><code>--diskless_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="747"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="748"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="749"><code>NC_DISKLESS</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="750">diskless files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="751">memory requirements</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="752">memory available</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="753"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="754">swap space</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="755">peak memory usage</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="745"><code>--ram_all</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="746"><code>--create_ram</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="747"><code>--open_ram</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="748"><code>--diskless_all</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="749"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="750"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="751"><code>NC_DISKLESS</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="752">diskless files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="753">memory requirements</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="754">memory available</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="755"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="756">swap space</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="757">peak memory usage</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: &linebreak;
@@ -6985,7 +7017,7 @@ To be safe, use <samp>--open_ram</samp>, <samp>--ram_all</samp>, or
of four) smaller than your available system <acronym><acronymword>RAM</acronymword></acronym>.
See <ref label="Memory-Requirements"><xrefnodename>Memory Requirements</xrefnodename></ref> for further details.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="756"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="758"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
<para>The <samp>--create_ram</samp> switch causes output files to be created in RAM,
rather than on disk.
These files are copied to disk only when closed, i.e., when the
@@ -7036,9 +7068,9 @@ It is not unreasonable to for <acronym><acronymword>NCO</acronymword></acronym>
like this in a few minutes.
However, there is no substitute for benchmarking with real files.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="757">temporary output files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="758">temporary files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="759"><code>--no_tmp_fl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="759">temporary output files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="760">temporary files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="761"><code>--no_tmp_fl</code></indexterm></cindex>
<para>A completely independent way to reduce time spent writing files is
to refrain from writing temporary output files.
This is accomplished with the <samp>--no_tmp_fl</samp> switch
@@ -7051,16 +7083,16 @@ This is accomplished with the <samp>--no_tmp_fl</samp> switch
</section>
<node name="Packed-data" spaces=" "><nodename>Packed data</nodename><nodenext spaces=" ">Operation Types</nodenext><nodeprev spaces=" ">RAM disks</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Packed data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="760">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="761">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="762"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="763"><code>scale_factor</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="764"><code>missing_value</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="765"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="766"><command>pack(x)</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="767"><command>unpack(x)</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="768"><code>--hdf_upk</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="769"><code>--hdf_unpack</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="762">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="763">unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="764"><code>add_offset</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="765"><code>scale_factor</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="766"><code>missing_value</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="767"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="768"><command>pack(x)</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="769"><command>unpack(x)</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="770"><code>--hdf_upk</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="771"><code>--hdf_unpack</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
@@ -7163,8 +7195,8 @@ unpacked data, i.e., <code>int</code>, <code>float</code> or <code>double</code>
<a name="hdf_upk"></a> <!&textndash; http://nco.sf.net/nco.html#hdf_upk &textndash;>
<a name="hdf_unpack"></a> <!&textndash; http://nco.sf.net/nco.html#hdf_unpack &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="770">interoperability</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="771"><acronym><acronymword>HDF</acronymword></acronym> unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="772">interoperability</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="773"><acronym><acronymword>HDF</acronymword></acronym> unpacking</indexterm></cindex>
<para>Most files originally written in <acronym><acronymword>HDF</acronymword></acronym> format use the
<acronym><acronymword>HDF</acronymword></acronym> packing/unpacking algorithm.
This algorithm is incompatible with the netCDF packing algorithm
@@ -7268,27 +7300,27 @@ Pack and unpack individual variables with <command>ncpdq</command> and the
</section>
<node name="Operation-Types" spaces=" "><nodename>Operation Types</nodename><nodenext spaces=" ">Type Conversion</nodenext><nodeprev spaces=" ">Packed data</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Operation Types</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="772">operation types</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="773"><code>avg</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="774"><code>sqravg</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="775"><code>avgsqr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="776"><code>min</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="777"><code>max</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="778"><code>rmssdn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="779"><code>rms</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="780"><code>ttl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="781"><code>sqrt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="782">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="783">mean</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="784">total</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="785">minimum</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="786">maximum</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="787">root-mean-square</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="788">standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="789">variance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="790"><code>-y <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="791"><code>--operation <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="792"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="774">operation types</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="775"><code>avg</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="776"><code>sqravg</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="777"><code>avgsqr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="778"><code>min</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="779"><code>max</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="780"><code>rmssdn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="781"><code>rms</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="782"><code>ttl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="783"><code>sqrt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="784">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="785">mean</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="786">total</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="787">minimum</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="788">maximum</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="789">root-mean-square</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="790">standard deviation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="791">variance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="792"><code>-y <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="793"><code>--operation <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="794"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncap2</command>, <command>ncra</command>, <command>nces</command>, <command>ncwa</command>&linebreak;
Short options: <samp>-y</samp>&linebreak;
@@ -7319,7 +7351,7 @@ Set <var>op_typ</var> to the abbreviated key for the corresponding operation:
</tableterm><tableitem><para>Sum of values
</para></tableitem></tableentry></table>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="793">coordinate variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="795">coordinate variable</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> assumes coordinate variables represent grid axes, e.g.,
longitude.
The only rank-reduction which makes sense for coordinate variables
@@ -7553,7 +7585,7 @@ ncwa -y rms -v prs_sfc -a time in.nc foo.nc
<noindent></noindent>
<para>The previous two commands give the same answer but <command>ncra</command> is
preferred because it has a smaller memory footprint.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="794">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="796">degenerate dimension</indexterm></cindex>
A dimension of size one is said to be <dfn>degenerate</dfn>.
By default, <command>ncra</command> leaves the (degenerate) <code>time</code>
dimension in the output file (which is usually useful) whereas
@@ -7578,7 +7610,7 @@ We can now find the three month maximium surface pressure at every point.
<a name="xmp_sdn"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_sdn &textndash;>
</html>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="795">standard deviation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="797">standard deviation</indexterm></cindex>
<para>It is possible to use a combination of these operations to compute
the variance and standard deviation of a field stored in a single file
or across multiple files.
@@ -7669,7 +7701,7 @@ less required by the <command>ncbo</command> operation in the third step.
</section>
<node name="Type-Conversion" spaces=" "><nodename>Type Conversion</nodename><nodenext spaces=" ">Batch Mode</nodenext><nodeprev spaces=" ">Operation Types</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Type Conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="796">type conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="798">type conversion</indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability (automatic type conversion): <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
<command>ncflint</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
@@ -7678,10 +7710,10 @@ Availability (manual type conversion): <command>nces</command>, <command>ncra</c
Short options: None&linebreak;
Long options: <samp>--dbl</samp>, <samp>--flt</samp>, <samp>--rth_dbl</samp>, <samp>--rth_flt</samp>&linebreak;
</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="797">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="798">demotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="799">automatic type conversion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="800">manual type conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="799">promotion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="800">demotion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="801">automatic type conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="802">manual type conversion</indexterm></cindex>
<para>Type conversion refers to the casting or coercion of one fundamental or
atomic data type to another, e.g., converting <code>NC_SHORT</code> (two
bytes) to <code>NC_DOUBLE</code> (eight bytes).
@@ -7795,7 +7827,7 @@ Similarly, the total (e.g., <samp>-y ttl</samp>) of <code>17000s</code> and
the final result (the true total) of <math>34000</math> is outside the range
of type <code>NC_SHORT</code>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="801"><code>trunc()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="803"><code>trunc()</code></indexterm></cindex>
<para>After arithmetic is computed in double-precision for promoted variables,
the intermediate double-precision values must be demoted to the
variables&textrsquo; original storage type (e.g., from <code>NC_DOUBLE</code> to
@@ -7803,7 +7835,7 @@ variables&textrsquo; original storage type (e.g., from <code>NC_DOUBLE</code> to
<acronym><acronymword>NCO</acronymword></acronym> has handled this demotion in three ways in its history.
Prior to October, 2011 (version 4.0.8), <acronym><acronymword>NCO</acronymword></acronym> employed the
<w>C library</w> truncate function, <code>trunc()</code>
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="802">C language</indexterm></cindex>
+<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="804">C language</indexterm></cindex>
<para>The actual type conversions with trunction were handled by intrinsic
type conversion, so the <code>trunc()</code> function was never explicitly
called, although the results would be the same if it were.</para></footnote>.
@@ -7816,7 +7848,7 @@ integer!
Yet truncation is how the <w>C language</w> performs implicit conversion of
real numbers to integers.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="803">Neil Davis</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="805">Neil Davis</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> stopped using truncation for demotion when an alert user
(Neil Davis) informed us that this caused a small bias in the packing
algorithm employed by <command>ncpdq</command>.
@@ -7835,7 +7867,7 @@ This rounds, for example, <code>1.5d</code> and <code>2.5d</code> to <code>1s</c
and <code>2s</code>, respectively.
</para>
<findex index="fn" spaces=" "><indexterm index="fn" number="13" mergedindex="cp"><code>lrint()</code>.</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="804"><acronym><acronymword>IEEE</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="806"><acronym><acronymword>IEEE</acronymword></acronym></indexterm></cindex>
<para>Since April, 2013 (version 4.3.0), <acronym><acronymword>NCO</acronymword></acronym> has employed the
other <w>C library</w> family of rounding functions, <code>lrint()</code>.
This algorithm rounds <var>x</var> to the nearest integer, using the current
@@ -7863,12 +7895,12 @@ stores it on disk as
</subsection>
<node name="Promoting-Single_002dprecision-to-Double" spaces=" "><nodename>Promoting Single-precision to Double</nodename><nodenext spaces=" ">Manual type conversion</nodenext><nodeprev spaces=" ">Automatic type conversion</nodeprev><nodeup spaces=" ">Type Conversion</nodeup></node>
<subsection spaces=" "><sectiontitle>Promoting Single-precision to Double</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="805">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="806">implicit conversion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="807"><code>--dbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="808"><code>--rth_dbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="809"><code>--flt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="810"><code>--rth_flt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="807">promotion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="808">implicit conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="809"><code>--dbl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="810"><code>--rth_dbl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="811"><code>--flt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="812"><code>--rth_flt</code></indexterm></cindex>
<para>Promotion of real numbers from single- to double-precision is
fundamental to scientific computing.
When it should occur depends on the precision of the inputs and the
@@ -7899,8 +7931,8 @@ precision than single-precision numbers.
</para>
<para>Given these properties, there are at least two possible arithmetic
conventions for the treatment of real numbers:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="811">C language</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="812">Fortran</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="813">C language</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="814">Fortran</indexterm></cindex>
</para><enumerate first="1" endspaces=" ">
<listitem spaces=" "><para>Conservative, aka Fortran Convention
Automatic type conversion during arithmetic in the Fortran language is,
@@ -8071,9 +8103,9 @@ degrade the precision in such situtations.
Double-precision arithmetic mititgates this problem, so <samp>--dbl</samp>
would be warranted.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="813"><acronym><acronymword>TREFHT</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="814"><acronym><acronymword>CAM3</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="815"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="815"><acronym><acronymword>TREFHT</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="816"><acronym><acronymword>CAM3</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="817"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
<para>This can be seen with another example, averaging a global surface
temperature field with <command>ncwa</command>.
The input contains a single-precision global temperature field
@@ -8152,8 +8184,8 @@ It means that the global mean temperature changes scientists are looking
for are comparable in size to the numerical artifacts produced by the
averaging procedure.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="816">rounding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="817">random walk</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="818">rounding</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="819">random walk</indexterm></cindex>
<para>Why are the single-precision numerical artifacts so large?
Each global average is the result of multiplying almost 15,000 elements
each by its weight, summing those, and then dividing by the summed
@@ -8162,7 +8194,7 @@ Thus about 50,000 single-precision floating point operations caused
the loss of two to three significant digits of precision.
The net error of a series of independent rounding errors is a random
walk phenomena
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="818">Michael Prather</indexterm></cindex>
+<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="820">Michael Prather</indexterm></cindex>
<para>Thanks to <w>Michael J.</w> Prather for explaining this to me.</para></footnote>.
Successive rounding errors displace the answer further from the truth.
An ensemble of such averages will, on average, have no net bias.
@@ -8171,8 +8203,8 @@ rounding errors is zero.
And the error of any given sequence of rounding errors obeys, for large
series, a Gaussian distribution centered on zero.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="819">mantissa</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="820">exponent</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="821">mantissa</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="822">exponent</indexterm></cindex>
<para>Single-precision numbers use three of their four eight-bit bytes to
represent the mantissa so the smallest representable single-precision
mantissa is <math>\epsilon \equiv 2^{-23} = 1.19209 \times 10^{-7}</math>.
@@ -8205,7 +8237,7 @@ agreement.
<!-- c P(>=25500,50000)= ? -->
<!-- c fxm: Use Gaussian distribution/Random Walk -->
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="821">beer</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="823">beer</indexterm></cindex>
<para>The <acronym><acronymword>NCO</acronymword></acronym> results have been independently validated to the
extent possible in three other languages:
<w>C</w>, Matlab, and <acronym><acronymword>NCL</acronymword></acronym>.
@@ -8278,7 +8310,7 @@ Please let us know what you think of the selected defaults and options.
</subsection>
<node name="Manual-type-conversion" spaces=" "><nodename>Manual type conversion</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Promoting Single-precision to Double</nodeprev><nodeup spaces=" ">Type Conversion</nodeup></node>
<subsection spaces=" "><sectiontitle>Manual type conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="822"><command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="824"><command>ncap2</command></indexterm></cindex>
<para><command>ncap2</command> provides intrinsic functions for performing manual type
conversions.
This, for example, converts variable <code>tpt</code> to external type
@@ -8297,17 +8329,17 @@ external type <code>NC_DOUBLE</code> (a C-type <code>double</code>).
</section>
<node name="Batch-Mode" spaces=" "><nodename>Batch Mode</nodename><nodenext spaces=" ">History Attribute</nodenext><nodeprev spaces=" ">Type Conversion</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Batch Mode</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="823">batch mode</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="824">overwriting files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="825">appending to files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="826">force overwrite</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="827">force append</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="828"><code>-O</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="829"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="830"><code>--overwrite</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="831"><code>--ovr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="832"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="833"><code>--append</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="825">batch mode</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="826">overwriting files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="827">appending to files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="828">force overwrite</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="829">force append</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="830"><code>-O</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="831"><code>-A</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="832"><code>--overwrite</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="833"><code>--ovr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="834"><code>--apn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="835"><code>--append</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-O</samp>, <samp>-A</samp>&linebreak;
@@ -8338,13 +8370,13 @@ already contain the appended dimensions.
</section>
<node name="History-Attribute" spaces=" "><nodename>History Attribute</nodename><nodenext spaces=" ">File List Attributes</nodenext><nodeprev spaces=" ">Batch Mode</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>History Attribute</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="834"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="835">timestamp</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="836">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="837">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="838"><code>-h</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="839"><code>--hst</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="840"><code>--history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="836"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="837">timestamp</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="838">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="839">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="840"><code>-h</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="841"><code>--hst</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="842"><code>--history</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-h</samp>&linebreak;
@@ -8371,7 +8403,7 @@ attributes.
When more than one global attribute fits the case-insensitive search
for "history", the first one found will be used.
<code>history</code> attribute
-<cindex index="cp" spaces=" "><indexterm index="cp" number="841"><command>ncatted</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="843"><command>ncatted</command></indexterm></cindex>
To avoid information overkill, all operators have an optional switch
(<samp>-h</samp>, <samp>--hst</samp>, or <samp>--history</samp>) to override
automatically appending the <code>history</code> attribute
@@ -8386,14 +8418,14 @@ Note that the <samp>-h</samp> switch also turns off writing the
</section>
<node name="File-List-Attributes" spaces=" "><nodename>File List Attributes</nodename><nodenext spaces=" ">CF Conventions</nodenext><nodeprev spaces=" ">History Attribute</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>File List Attributes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="842"><code>nco_input_file_list</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="843"><code>nco_input_file_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="844"><code>stdin</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="845">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="846">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="847"><code>-H</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="848"><code>--fl_lst_in</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="849"><code>--file_list</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="844"><code>nco_input_file_list</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="845"><code>nco_input_file_number</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="846"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="847">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="848">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="849"><code>-H</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="850"><code>--fl_lst_in</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="851"><code>--file_list</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>nces</command>, <command>ncecat</command>, <command>ncra</command>, <command>ncrcat</command>&linebreak;
Short options: <samp>-H</samp>&linebreak;
@@ -8438,21 +8470,21 @@ may amount to many thousands of filenames in a metadata attribute.
</section>
<node name="CF-Conventions" spaces=" "><nodename>CF Conventions</nodename><nodenext spaces=" ">ARM Conventions</nodenext><nodeprev spaces=" ">File List Attributes</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle><acronym><acronymword>CF</acronymword></acronym> Conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="850"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="851"><acronym><acronymword>CCSM</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="852">UDUnits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="853"><code>ORO</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="854"><code>area</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="855"><code>datesec</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="856"><code>date</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="857"><code>gw</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="858"><code>hyai</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="859"><code>hyam</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="860"><code>hybi</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="861"><code>hybm</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="862"><code>lat_bnds</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="863"><code>lon_bnds</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="864"><code>msk_*</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="852"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="853"><acronym><acronymword>CCSM</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="854">UDUnits</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="855"><code>ORO</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="856"><code>area</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="857"><code>datesec</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="858"><code>date</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="859"><code>gw</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="860"><code>hyai</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="861"><code>hyam</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="862"><code>hybi</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="863"><code>hybm</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="864"><code>lat_bnds</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="865"><code>lon_bnds</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="866"><code>msk_*</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
@@ -8516,7 +8548,7 @@ variables because of their usual meaning in <acronym><acronymword>CF</acronymwor
These variables contain scalar metadata such as the resolution of the
host geophysical model and it makes no sense to change their values.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="865">non-coordinate grid properties</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="867">non-coordinate grid properties</indexterm></cindex>
<para>Furthermore, the <dfn>size and rank-preserving arithmetic operators</dfn> try
not to operate on certain grid properties.
These operators are <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
@@ -8560,8 +8592,8 @@ or alter the <code>Conventions</code> attribute.
<a name="cnv_CF_bnd"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_bnd &textndash;>
<a name="bnd"></a> <!&textndash; http://nco.sf.net/nco.html#bnd &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="866"><code>bounds</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="867">bounds convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="868"><code>bounds</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="869">bounds convention</indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.0.8 (April, 2011), <acronym><acronymword>NCO</acronymword></acronym>
supports the <acronym><acronymword>CF</acronymword></acronym> <code>bounds</code> convention for cell boundaries
described
@@ -8579,17 +8611,17 @@ Hence the subsets will themselves be <acronym><acronymword>CF</acronymword></acr
<html endspaces=" ">
<a name="cnv_CF_crd"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_crd &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="868"><code>coordinates</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="869">coordinates convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="870">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="871">auxiliary coordinates</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="872">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="873"><code>-C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="874"><code>-c</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="875"><code>--no-coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="876"><code>--no-crd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="877"><code>--coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="878"><code>--crd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="870"><code>coordinates</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="871">coordinates convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="872">coordinate variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="873">auxiliary coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="874">subsetting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="875"><code>-C</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="876"><code>-c</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="877"><code>--no-coords</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="878"><code>--no-crd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="879"><code>--coords</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="880"><code>--crd</code></indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 3.9.6 (January, 2009), <acronym><acronymword>NCO</acronymword></acronym>
supports the <acronym><acronymword>CF</acronymword></acronym> <code>coordinates</code> convention described
<uref><urefurl>http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.6/cf-conventions.html#coordinate-system</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
@@ -8607,12 +8639,12 @@ described in <ref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetti
<a name="no_cll_mth"></a> <!&textndash; http://nco.sf.net/nco.html#no_cll_mth &textndash;>
<a name="cell_methods"></a> <!&textndash; http://nco.sf.net/nco.html#cell_methods &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="879"><code>cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="880"><code>--cll_mth</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="881"><code>--no_cll_mth</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="882"><code>--cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="883"><code>--no_cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="884">cell methods convention</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="881"><code>cell_methods</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="882"><code>--cll_mth</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="883"><code>--no_cll_mth</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="884"><code>--cell_methods</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="885"><code>--no_cell_methods</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="886">cell methods convention</indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.2 (February, 2014), <acronym><acronymword>NCO</acronymword></acronym>
supports some of the <acronym><acronymword>CF</acronymword></acronym> <code>cell_methods</code>
<uref><urefurl>http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.7-draft1/cf-conventions.html#cell-methods</urefurl><urefdesc spaces=" ">convention</urefdesc></uref>
@@ -8648,10 +8680,10 @@ These options are only available in the operators <command>ncwa</command> and
</section>
<node name="ARM-Conventions" spaces=" "><nodename>ARM Conventions</nodename><nodenext spaces=" ">Operator Version</nodenext><nodeprev spaces=" ">CF Conventions</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle><acronym><acronymword>ARM</acronymword></acronym> Conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="885"><acronym><acronymword>ARM</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="886"><code>time_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="887"><code>base_time</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="888"><code>time</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="887"><acronym><acronymword>ARM</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="888"><code>time_offset</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="889"><code>base_time</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="890"><code>time</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: <command>ncrcat</command>&linebreak;
Short options: None&linebreak;
@@ -8687,9 +8719,9 @@ The values of <code>time</code> are defined by the <acronym><acronymword>ARM</ac
<math><var>time</var> = <var>base_time</var> + <var>time_offset</var></math>.
Thus, if <var>output-file</var> contains the <code>time_offset</code>
variable, it will also contain the <code>time</code> coordinate.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="889"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="890">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="891">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="891"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="892">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="893">attributes, global</indexterm></cindex>
<w>A short</w> message is added to the <code>history</code> global attribute
whenever these <acronym><acronymword>ARM</acronymword></acronym>-specific procedures are executed.
</para>
@@ -8700,12 +8732,12 @@ whenever these <acronym><acronymword>ARM</acronymword></acronym>-specific proced
</section>
<node name="Operator-Version" spaces=" "><nodename>Operator Version</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ARM Conventions</nodeprev><nodeup spaces=" ">Common features</nodeup></node>
<section spaces=" "><sectiontitle>Operator Version</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="892">version</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="893"><acronym><acronymword>RCS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="894"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="895"><code>--revision</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="896"><code>--version</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="897"><code>--vrs</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="894">version</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="895"><acronym><acronymword>RCS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="896"><code>-r</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="897"><code>--revision</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="898"><code>--version</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="899"><code>--vrs</code></indexterm></cindex>
<cartouche endspaces=" ">
<para>Availability: All operators&linebreak;
Short options: <samp>-r</samp>&linebreak;
@@ -8739,7 +8771,7 @@ This tells you that <command>ncks</command> contains all patches up to version
<para>This chapter presents reference pages for each of the operators
individually.
The operators are presented in alphabetical order.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="898">command line switches</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="900">command line switches</indexterm></cindex>
All valid command line switches are included in the syntax statement.
Recall that descriptions of many of these command line switches are
provided only in <ref label="Common-features"><xrefnodename>Common features</xrefnodename></ref>, to avoid redundancy.
@@ -8768,9 +8800,9 @@ described in any detail in the sections below.
</html>
<node name="ncap2-netCDF-Arithmetic-Processor" spaces=" "><nodename>ncap2 netCDF Arithmetic Processor</nodename><nodenext spaces=" ">ncatted netCDF Attribute Editor</nodenext><nodeprev spaces=" ">Operator Reference Manual</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncap2</command> netCDF Arithmetic Processor</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="899">parser</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="900">lexer</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="901">arithmetic processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="901">parser</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="902">lexer</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="903">arithmetic processor</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="14" mergedindex="cp">ncap</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="15" mergedindex="cp">ncap2</indexterm></findex>
@@ -8812,11 +8844,11 @@ This documentation refers to <command>ncap2</command>, which has a superset of
the <command>ncap</command> functionality.
Eventually <command>ncap</command> will be deprecated in favor <command>ncap2</command>.
<command>ncap2</command> may be renamed <command>ncap</command> in 2013.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="902">script file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="903"><code>--script-file</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="904"><code>--fl_spt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="905"><code>--script</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="906"><code>--spt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="904">script file</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="905"><code>--script-file</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="906"><code>--fl_spt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="907"><code>--script</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="908"><code>--spt</code></indexterm></cindex>
The processing instructions are contained either in the <acronym><acronymword>NCO</acronymword></acronym>
script file <file>fl.nco</file> or in a sequence of command line arguments.
The options <samp>-s</samp> (or long options <samp>--spt</samp> or <samp>--script</samp>)
@@ -8825,7 +8857,7 @@ are used for in-line scripts and <samp>-S</samp> (or long options
filename where (usually multiple) scripting commands are pre-stored.
<command>ncap2</command> was written to perform arbitrary algebraic
transformations of data and archive the results as easily as possible.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="907">derived fields</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="909">derived fields</indexterm></cindex>
<xref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></xref>, for treatment of missing values.
The results of the algebraic manipulations are called
<dfn>derived fields</dfn>.
@@ -8836,7 +8868,7 @@ variables to be operated on as an argument to <samp>-v</samp>
Rather, the <samp>-v</samp> switch takes no arguments and indicates
that <command>ncap2</command> should output <emph>only</emph> user-defined variables.
<command>ncap2</command> neither accepts nor understands the <var>-x</var> switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="908">appending variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="910">appending variables</indexterm></cindex>
NB: As of 20120515, <command>ncap2</command> is unable to append to files that
already contain the appended dimensions.
</para>
@@ -8877,7 +8909,7 @@ already contain the appended dimensions.
</html>
<para>Defining new variables in terms of existing variables is a powerful
feature of <command>ncap2</command>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="909">derived fields</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="911">derived fields</indexterm></cindex>
Derived fields inherit the metadata (i.e., attributes) of their
ancestors, if any, in the script or input file.
When the derived field is completely new (no identically-named ancestors
@@ -8897,49 +8929,49 @@ using left hand casting.
</html>
<node name="Syntax-of-ncap2-statements" spaces=" "><nodename>Syntax of ncap2 statements</nodename><nodenext spaces=" ">Expressions</nodenext><nodeprev spaces=" ">ncap2 netCDF Arithmetic Processor</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Syntax of <command>ncap2</command> statements</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="910">statement</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="911">syntax</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="912">statement</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="913">syntax</indexterm></cindex>
<para>Mastering <command>ncap2</command> is relatively simple.
Each valid statement <var>statement</var> consists of standard forward
algebraic expression.
The <file>fl.nco</file>, if present, is simply a list of such statements,
whitespace, and comments.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="912">C language</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="914">C language</indexterm></cindex>
The syntax of statements is most like the computer <w>language C</w>.
The following characteristics <w>of C</w> are preserved:
</para><table commandarg="asis" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="asis">Array syntax</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="913">array syntax</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="914"><code>[]</code> (array delimiters)</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="915">array syntax</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="916"><code>[]</code> (array delimiters)</indexterm></cindex>
<para>Arrays elements are placed within <code>[]</code> characters;
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Array indexing</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="915">array indexing</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="917">array indexing</indexterm></cindex>
<para>Arrays are 0-based;
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Array storage</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="916">array storage</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="918">array storage</indexterm></cindex>
<para>Last dimension is most rapidly varying;
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Assignment statements</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="917">assignment statement</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="918">semi-colon</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="919"><code>;</code> (end of statement)</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="919">assignment statement</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="920">semi-colon</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="921"><code>;</code> (end of statement)</indexterm></cindex>
<para><w>A semi</w>-colon <samp>;</samp> indicates the end of an assignment statement.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Comments</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="920">comments</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="921"><code>/*...*/</code> (comment)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="922"><code>//</code> (comment)</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="922">comments</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="923"><code>/*...*/</code> (comment)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="924"><code>//</code> (comment)</indexterm></cindex>
<para>Multi-line comments are enclosed within <code>/* */</code> characters.
Single line comments are preceded by <code>//</code> characters.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Nesting</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="923">including files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="924">nesting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="925"><code>#include</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="925">including files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="926">nesting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="927"><code>#include</code></indexterm></cindex>
<para>Files may be nested in scripts using <code>#include <var>script</var></code>.
Note that the <code>#include</code> command is not followed by a semi-colon
because it is a pre-processor directive, not an assignment statement.
The filename <file>script</file> is interpreted relative to the run directory.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Attribute syntax</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="926">attribute syntax</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="927"><code>&arobase;</code> (attribute)</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="928">attribute syntax</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="929"><code>&arobase;</code> (attribute)</indexterm></cindex>
<para>The at-sign <code>&arobase;</code> is used to delineate an attribute name from a
variable name.
</para></tableitem></tableentry></table>
@@ -8949,12 +8981,12 @@ variable name.
</html>
</subsection>
<node name="Expressions" spaces=" "><nodename>Expressions</nodename><nodenext spaces=" ">Dimensions</nodenext><nodeprev spaces=" ">Syntax of ncap2 statements</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="928">expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="930">expressions</indexterm></cindex>
<subsection spaces=" "><sectiontitle>Expressions</sectiontitle>
<para>Expressions are the fundamental building block of <command>ncap2</command>.
Expressions are composed of variables, numbers, literals, and
attributes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="929">C language</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="931">C language</indexterm></cindex>
The following <w>C operators</w> are &textldquo;overloaded&textrdquo; and work with scalars
and multi-dimensional arrays:
</para><example endspaces=" ">
@@ -8983,8 +9015,8 @@ When either type is <code>NC_DOUBLE</code>, the result is also <code>NC_DOUBLE</
</para></listitem></itemize>
<!-- c csz got to here editing -->
-<cindex index="cp" spaces=" "><indexterm index="cp" number="930">broadcasting variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="931">rank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="932">broadcasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="933">rank</indexterm></cindex>
<para><strong>Rank</strong>
</para><itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/> </itemprepend>
<listitem spaces=" "><prepend>•</prepend><para>The Rank of the result is generally equal to Rank of the operand
@@ -9040,7 +9072,7 @@ Consider now
</pre></example>
<noindent></noindent> <para><strong>Binary Operators</strong> &linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="932">binary Operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="934">binary Operators</indexterm></cindex>
Unlike C the binary operators return an array of values.
There is no such thing as short circuiting with the AND/OR operators.
Missing values are carried into the result in the same way they are with
@@ -9102,7 +9134,7 @@ n4=--time; n4=time=0.,1.,2.,3.,4.,5.,6.,7.,8.,9.;
</pre></example>
<noindent></noindent> <para><strong>Conditional Operator ?: </strong> &linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="933">conditional Operator</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="935">conditional Operator</indexterm></cindex>
<noindent></noindent> <emph>exp1 ? exp2 : exp3 </emph> &linebreak;
The conditional operator (or ternary Operator) is a succinct way
of writing an if/then/else. If exp1 evaluates to true then exp2 is
@@ -9120,7 +9152,7 @@ PS_nw=PS-(PS.min() > 100000 ? 100000 : 0);
<a name="clipping"></a> <!&textndash; http://nco.sf.net/nco.html#clipping &textndash;>
</html>
<noindent></noindent> <para><strong>Clipping Operators</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="934">clipping operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="936">clipping operators</indexterm></cindex>
</para><table commandarg="asis" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="asis"><< Less-than Clipping&linebreak;</itemformat></item>
</tableterm><tableitem><para>For arrays, the less-than selection operator selects all values in the
@@ -9151,8 +9183,8 @@ RDM2=RDM << 90s // 1, 9, 36, 84, 90, 90, 84, 36, 9, 1 int
</subsection>
<node name="Dimensions" spaces=" "><nodename>Dimensions</nodename><nodenext spaces=" ">Left hand casting</nodenext><nodeprev spaces=" ">Expressions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Dimensions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="935">defining dimensions in <command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="936"><code>defdim()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="937">defining dimensions in <command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="938"><code>defdim()</code></indexterm></cindex>
<para>Dimensions are defined in Output using the <code>defdim()</code> function.
</para><example endspaces=" ">
<pre xml:space="preserve">defdim("cnt",10);
@@ -9217,9 +9249,9 @@ A1['$a--list.A']=30.0;
</subsection>
<node name="Left-hand-casting" spaces=" "><nodename>Left hand casting</nodename><nodenext spaces=" ">Arrays and hyperslabs</nodenext><nodeprev spaces=" ">Dimensions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Left hand casting</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="937">hybrid coordinate system</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="938">left hand casting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="939"><acronym><acronymword>LHS</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="939">hybrid coordinate system</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="940">left hand casting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="941"><acronym><acronymword>LHS</acronymword></acronym></indexterm></cindex>
<para>The following examples demonstrate the utility of the
<dfn>left hand casting</dfn> ability of <command>ncap2</command>.
Consider first this simple, artificial, example.
@@ -9283,10 +9315,10 @@ coordinate system is easy with left hand casting.
<subsection spaces=" "><sectiontitle>Arrays and hyperslabs</sectiontitle>
<findex index="fn" spaces=" "><indexterm index="fn" number="16" mergedindex="cp">array</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="940"><code>array</code> function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="941">arrays</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="942">findgen-equivalent</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="943">indgen-equivalent</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="942"><code>array</code> function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="943">arrays</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="944">findgen-equivalent</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="945">indgen-equivalent</indexterm></cindex>
<para>Generating a regularly spaced one-dimensional array with <command>ncap2</command>
is simple with the <code>array()</code> function.
The syntax is
@@ -9324,7 +9356,7 @@ var_out=array(1+2-2,one,$time); // 1,2,3,4,5,6,7,8,9,10
var_out=array(1,2,three_dmn_rec_var); // 1,3,5,...155,157,159
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="944">hyperslabs</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="946">hyperslabs</indexterm></cindex>
<para>Hyperslabs in <command>ncap2</command> are more limited than hyperslabs with the
other <acronym><acronymword>NCO</acronymword></acronym> operators.
<command>ncap2</command> does not understand the shell command-line syntax
@@ -9437,7 +9469,7 @@ prs(:,1,:,:)=th1
</pre></example>
<noindent></noindent> <para><strong>Reverse method</strong>&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="945">reverse()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="947">reverse()</indexterm></cindex>
Use the <code>reverse()</code> method to reverse a dimension&textrsquo;s elements in a
variable with at least one dimension.
This is equivalent to a negative stride, e.g.,
@@ -9447,7 +9479,7 @@ od_rv=od.reverse($time); // {38,36,34,32,30,28,26,24,22,20}
</pre></example>
<noindent></noindent> <para><strong>Permute method</strong>p&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="946">permute()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="948">permute()</indexterm></cindex>
Use the <code>permute()</code> method to swap the dimensions of a variable.
The number and names of dimension arguments must match the dimensions in
the variable.
@@ -9478,7 +9510,7 @@ three_dmn_var_prm=
</subsection>
<node name="Attributes" spaces=" "><nodename>Attributes</nodename><nodenext spaces=" ">Number literals</nodenext><nodeprev spaces=" ">Arrays and hyperslabs</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Attributes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="947">attributes<command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="949">attributes<command>ncap2</command></indexterm></cindex>
<noindent></noindent> <para>Attributes are referred to by <emph>var_nm&arobase;att_nm</emph> &linebreak;
All the following are valid statements:
</para><example endspaces=" ">
@@ -9494,7 +9526,7 @@ a1($time.size-1)=a1&arobase;max;
</pre></example>
<para>A <emph>value list</emph> can be used on the RHS of an assign...
-<cindex index="cp" spaces=" "><indexterm index="cp" number="948">value list</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="950">value list</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">a1&arobase;trip1={1,2,3} ;
a1&arobase;triplet={a1&arobase;min,(a1&arobase;min+a1&arobase;max)/2,a1&arobase;max};
@@ -9522,14 +9554,12 @@ sng_arr[$sng_len]=a1&arobase;long_name; // sng_arr now contains "Kelvin&quo
To stop the attribute being written use the ram_delete() method or use a bogus variable name.
</para>
<noindent></noindent> <para><strong>Attribute Propagation and Inheritance</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="949">attribute propagation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="950">attribute inheritance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="951">attribute propagation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="952">attribute inheritance</indexterm></cindex>
</para><itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/></itemprepend>
-<beforefirstitem> </beforefirstitem><listitem spaces=" "><prepend>•</prepend><para>Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS
-</para>
- </listitem><listitem spaces=" "><prepend>•</prepend><para>Attribute Inheritance: The LHS variable "inherits" attributes from an Input variable with the same name
-</para>
- </listitem><listitem spaces=" "><prepend>•</prepend><para>It is possible to have a regular assign statement for which both propagation and inheritance occur.
+<beforefirstitem> </beforefirstitem><listitem spaces=" "><prepend>•</prepend><para>Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS.
+ </para></listitem><listitem spaces=" "><prepend>•</prepend><para>Attribute Inheritance: The LHS variable "inherits" attributes from an Input variable with the same name
+ </para></listitem><listitem spaces=" "><prepend>•</prepend><para>It is possible to have a regular assign statement for which both propagation and inheritance occur.
</para></listitem></itemize>
<example endspaces=" ">
@@ -9550,7 +9580,7 @@ th_min=1.0 + 2*three_dmn_var_dbl.min($time);
</subsection>
<node name="Number-literals" spaces=" "><nodename>Number literals</nodename><nodenext spaces=" ">if statement</nodenext><nodeprev spaces=" ">Attributes</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Number literals</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="951">number literals <command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="953">number literals <command>ncap2</command></indexterm></cindex>
<para>The table below lists the postfix character(s) to add to a number
literal for type cohesion.
To use the new netCDF4 types <acronym><acronymword>NCO</acronymword></acronym> must be compiled/linked to
@@ -9611,7 +9641,7 @@ n6&arobase;units="kelvin" // attribute will be type <code>NC_CHAR</cod
</subsection>
<node name="if-statement" spaces=" "><nodename>if statement</nodename><nodenext spaces=" ">print statement</nodenext><nodeprev spaces=" ">Number literals</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>if statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="952">if()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="954">if()</indexterm></cindex>
<para>The syntax of the if statement is similar to its C counterpart.
The <emph>Conditional Operator (ternary operator)</emph> has also been
implemented.
@@ -9690,7 +9720,7 @@ th_nw=(three_dmn_var_sht >= 0 ? three_dmn_var_sht.uint() : \
</subsection>
<node name="print-statement" spaces=" "><nodename>print statement</nodename><nodenext spaces=" ">Missing values ncap2</nodenext><nodeprev spaces=" ">if statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>print statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="953">print() <command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="955">print() <command>ncap2</command></indexterm></cindex>
<example endspaces=" ">
<pre xml:space="preserve">print(variable_name/attribute name/string, format string);
</pre></example>
@@ -9728,7 +9758,7 @@ This function is monotonic
</subsection>
<node name="Missing-values-ncap2" spaces=" "><nodename>Missing values ncap2</nodename><nodenext spaces=" ">Methods and functions</nodenext><nodeprev spaces=" ">print statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Missing values ncap2</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="954">missing values ncap2</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="956">missing values ncap2</indexterm></cindex>
<para>Missing values operate slightly differently in <command>ncap2</command>
Consider the expression where op is any of the following operators (excluding &textrsquo;=&textrsquo;)
</para><example endspaces=" ">
@@ -9771,7 +9801,7 @@ with a variable.
They only work on variables in Output.
</para><table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">set_miss(expr)</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="955"><code>set_miss()</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="957"><code>set_miss()</code></indexterm></cindex>
<para>The numeric argument <var>expr</var> becomes the new missing value,
overwriting the old missing value, if any.
The argument given is converted if necessary to the variable type.
@@ -9784,23 +9814,23 @@ They only work on variables in Output.
The intrinsic function <code>change_miss()</code> (see below) is typically
used to edit values of existing variables.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">change_miss(expr)</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="956"><code>change_miss()</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="958"><code>change_miss()</code></indexterm></cindex>
<para>Sets or changes (any pre-existing) missing value attribute and missing
data values to <var>expr</var>.
NB: This is an expensive function since all values must be examined.
Use this function when changing missing values for pre-existing
variables.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">get_miss() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="957"><code>get_miss()</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="959"><code>get_miss()</code></indexterm></cindex>
<para>Returns the missing value of a variable.
If the variable exists in Input and Output then the missing value of
the variable in Output is returned.
If the variable has no missing value then an error is returned.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">delete_miss()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="958"><code>delete_miss()</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="960"><code>delete_miss()</code></indexterm></cindex>
<para>Deletes the missing value associated with a variable.
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">number_miss()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="959"><code>number_miss()</code></indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="961"><code>number_miss()</code></indexterm></cindex>
<para>Counts the number of missing values a variable contains.
</para></tableitem></tableentry></table>
@@ -9861,26 +9891,26 @@ type double, average it, then convert this back to type short:
</para>
<table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">avg()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="960">avg()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="962">avg()</indexterm></cindex>
<para>Mean value
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sqravg()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="961">sqravg()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="963">sqravg()</indexterm></cindex>
<para>Square of the mean
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">avgsqr()</itemformat></item>
</tableterm><tableitem><para>Mean of sum of squares
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">max()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="962">max()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="964">max()</indexterm></cindex>
<para>Maximum value
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">min()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="963">min()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="965">min()</indexterm></cindex>
<para>Minimum value
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rms()</itemformat></item>
</tableterm><tableitem><para>Root-mean-square (normalize by <var>N</var>)
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rmssdn()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="964">rmssdn()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="966">rmssdn()</indexterm></cindex>
<para>Root-mean square (normalize by <var>N-1</var>)
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ttl() or total()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="965">ttl()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="967">ttl()</indexterm></cindex>
<para>Sum of values
</para></tableitem></tableentry></table>
@@ -9894,19 +9924,19 @@ four_time_avg=four_dmn_rec_var($time);
For more information see <pxref label="Packed-data"><xrefnodename>Packed data</xrefnodename></pxref> and <pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>&linebreak;
</para><table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">pack() & pack_short()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="966">pack()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="968">pack()</indexterm></cindex>
<para>The default packing algorithm is applied and variable is packed to <code>NC_SHORT</code>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_byte()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="967">pack_byte()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="969">pack_byte()</indexterm></cindex>
<para>Variable is packed to <code>NC_BYTE</code>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_short()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="968">pack_short()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="970">pack_short()</indexterm></cindex>
<para>Variable is packed to <code>NC_SHORT</code>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_int()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="969">pack_int()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="971">pack_int()</indexterm></cindex>
<para>Variable is packed to <code>NC_INT</code>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">unpack()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="970">unpack()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="972">unpack()</indexterm></cindex>
<para>The standard unpacking algorithm is applied.
</para></tableitem></tableentry></table>
@@ -9915,13 +9945,13 @@ These methods work with variables and attributes. They have no arguments
</para>
<table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">size() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="971">size()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="973">size()</indexterm></cindex>
<para>Total number of elements
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ndims()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="972">ndims()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="974">ndims()</indexterm></cindex>
<para>Number of dimensions in variable
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">type() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="973">type()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="975">type()</indexterm></cindex>
<para>Returns the netcdf type (see previous section)
</para></tableitem></tableentry></table>
@@ -9967,38 +9997,38 @@ lat_2D_rrg_new=0,90,-30,30,-30,30,-90,0
<table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code"><strong>netCDF3/4 Types</strong></itemformat></item>
</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">byte() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="974">byte()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="976">byte()</indexterm></cindex>
<para>convert to <code>NC_BYTE</code>, a signed 1-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">char()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="975">char()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="977">char()</indexterm></cindex>
<para>convert to <code>NC_CHAR</code>, an ISO/ASCII character
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">short() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="976">sshort()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="978">sshort()</indexterm></cindex>
<para>convert to <code>NC_SHORT</code>, a signed 2-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">int() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="977">int()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="979">int()</indexterm></cindex>
<para>convert to <code>NC_INT</code>, a signed 4-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">float()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="978">float()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="980">float()</indexterm></cindex>
<para>convert to <code>NC_FLOAT</code>, a single-precision (4-byte) floating point number
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">double() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="979">double()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="981">double()</indexterm></cindex>
<para>convert to <code>NC_DOUBLE</code>, a double-precision (8-byte) floating point number
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code"><strong>netCDF4 Types</strong></itemformat></item>
</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ubyte() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="980">ubyte()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="982">ubyte()</indexterm></cindex>
<para>convert to <code>NC_UBYTE</code>, an unsigned 1-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ushort() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="981">ushort()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="983">ushort()</indexterm></cindex>
<para>convert to <code>NC_USHORT</code>, an unsigned 2-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">uint()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="982">uint()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="984">uint()</indexterm></cindex>
<para>convert to <code>NC_UINT</code>, an unsigned 4-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">int64() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="983">int64()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="985">int64()</indexterm></cindex>
<para>convert to <code>NC_INT64</code>, a signed 8-byte integer
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">uint64() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="984">unit64()</indexterm></cindex>
+</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="986">unit64()</indexterm></cindex>
<para>convert to <code>NC_UINT64</code>, an unsigned 8-byte integer
</para></tableitem></tableentry></table>
@@ -10022,7 +10052,7 @@ n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n3 type doubl
<html endspaces=" ">
<a name="ncap_ram"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_ram &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="985"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="987"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
</subsection>
<node name="RAM-variables" spaces=" "><nodename>RAM variables</nodename><nodenext spaces=" ">Where statement</nodenext><nodeprev spaces=" ">Methods and functions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle><acronym><acronymword>RAM</acronymword></acronym> variables</sectiontitle>
@@ -10037,8 +10067,8 @@ To delete a <acronym><acronymword>RAM</acronymword></acronym> variables (and rec
<code>ram_delete()</code> method.
To write a <acronym><acronymword>RAM</acronymword></acronym> variable to disk (like a regular variable) use
<code>ram_write()</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="986">ram_write()</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="987">ram_delete()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="988">ram_write()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="989">ram_delete()</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">*temp[$time,$lat,$lon]=10.0; // Cast
*temp_avg=temp.avg($time); // Regular assign
@@ -10060,7 +10090,7 @@ temp_avg.ram_write(); // Write Variable to output
</subsection>
<node name="Where-statement" spaces=" "><nodename>Where statement</nodename><nodenext spaces=" ">Loops</nodenext><nodeprev spaces=" ">RAM variables</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Where statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="988">where()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="990">where()</indexterm></cindex>
<para>A <code>where()</code> combines the definition and application of a mask all in one go and can lead to succinct code.
The full syntax of a <code>where()</code> statement is as follows:
</para>
@@ -10144,8 +10174,8 @@ temp_max=temperature.max();
</subsection>
<node name="Loops" spaces=" "><nodename>Loops</nodename><nodenext spaces=" ">Include files</nodenext><nodeprev spaces=" ">Where statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Loops</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="989">while()</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="990">for()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="991">while()</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="992">for()</indexterm></cindex>
<para><command>ncap2</command> supplies <command>for()</command> loops and <command>while()</command> loops.
They are completely unoptimized so use them only with <acronym><acronymword>RAM</acronymword></acronym>
variables unless you want thrash your disk to death.
@@ -10192,7 +10222,7 @@ print("Total of odd elements ");print(sum);print("\n");
</subsection>
<node name="Include-files" spaces=" "><nodename>Include files</nodename><nodenext spaces=" ">Sort methods</nodenext><nodeprev spaces=" ">Loops</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Include files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="991"><command>include</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="993"><command>include</command></indexterm></cindex>
<para>The syntax of an <var>include-file</var> is:
</para><example endspaces=" ">
<pre xml:space="preserve">#include "script.nco"
@@ -10218,12 +10248,12 @@ e=2.71828; // Regular (disk) variable, written to output
</subsection>
<node name="Sort-methods" spaces=" "><nodename>Sort methods</nodename><nodenext spaces=" ">Irregular grids</nodenext><nodeprev spaces=" ">Include files</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle><command>sort</command> methods</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="992"><command>sort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="993"><command>asort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="994"><command>dsort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="995"><command>remap</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="996"><command>unmap</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="997"><command>invert_map</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="994"><command>sort</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="995"><command>asort</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="996"><command>dsort</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="997"><command>remap</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="998"><command>unmap</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="999"><command>invert_map</command></indexterm></cindex>
<para>In <acronym><acronymword>ncap2</acronymword></acronym> there are multiple ways to sort data.
Beginning with <acronym><acronymword>NCO</acronymword></acronym> 4.1.0 (March, 2012), <acronym><acronymword>ncap2</acronymword></acronym>
support six sorting functions:
@@ -10493,11 +10523,11 @@ ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
</subsection>
<node name="Irregular-grids" spaces=" "><nodename>Irregular grids</nodename><nodenext spaces=" ">Bilinear interpolation</nodenext><nodeprev spaces=" ">Sort methods</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>Irregular Grids</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="998">irregular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="999">rectangular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1000">non-rectangular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1001">non-standard grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1002">mask</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1000">irregular grids</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1001">rectangular grids</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1002">non-rectangular grids</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1003">non-standard grids</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1004">mask</indexterm></cindex>
<!-- c fxm need to edit rrg sxn beginning here -->
<para><acronym><acronymword>NCO</acronymword></acronym> is capable of analyzing datasets for many different
underlying coordinate grid types.
@@ -10533,7 +10563,7 @@ analysis software like <acronym><acronymword>NCO</acronymword></acronym>.
are independent of these grid properties (regularity,
rectangularity).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1003">wrapped coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1005">wrapped coordinates</indexterm></cindex>
<para>The preferred <acronym><acronymword>NCO</acronymword></acronym> technique to analyze data on non-standard
coordinate grids is to create a region mask with <command>ncap2</command>, and
then to use the mask within <command>ncap2</command> for variable-specific
@@ -10615,7 +10645,7 @@ ncl 'file_in="wrfout.nc"' 'file_out="wrfpost.nc"' wrfout_to_
ncl 'file_in="wrfout_d02_2013-10-04_20:00:00"' 'file_out="wrfout_d02_2013-10-04_20:00:00_cf.nc"' wrfout_to_cf.ncl
ncl 'file_in="wrfout_v2_Lambert"' 'file_out="wrfout_v2_Lambert.nc"' wrfout_to_cf.ncl
</ignore>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1004"><acronym><acronymword>WRF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1006"><acronym><acronymword>WRF</acronymword></acronym></indexterm></cindex>
<para>Grids like those produced by the <acronym><acronymword>WRF</acronymword></acronym> model are complex because
one must use global metadata to determine the grid staggering and
offsets to translate <code>XLAT</code> and <code>XLONG</code> into real latitudes,
@@ -10775,7 +10805,7 @@ print(T_out);
</subsection>
<node name="GSL-special-functions" spaces=" "><nodename>GSL special functions</nodename><nodenext spaces=" ">GSL interpolation</nodenext><nodeprev spaces=" ">Bilinear interpolation</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>GSL special functions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1005"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1007"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
<noindent></noindent> <para>As of version 3.9.6 (released January, 2009), <acronym><acronymword>NCO</acronymword></acronym>
can link to the GNU Scientific Library (<acronym><acronymword>GSL</acronymword></acronym>).
<command>ncap2</command> can access most <acronym><acronymword>GSL</acronymword></acronym> special functions including
@@ -10803,8 +10833,8 @@ The slow-down due to calling the error-handling version of the
<acronym><acronymword>GSL</acronymword></acronym> numerical functions was found to be negligible (please let
us know if you find otherwise).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1006">gamma function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1007"><var>gsl_sf_gamma</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1008">gamma function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1009"><var>gsl_sf_gamma</var></indexterm></cindex>
<noindent></noindent> <para>Consider the gamma function.&linebreak;
<noindent></noindent> The <acronym><acronymword>GSL</acronymword></acronym> function prototype is &linebreak;
<code>int gsl_sf_gamma_e(const double x, gsl_sf_result * result)</code>
@@ -10822,8 +10852,8 @@ Otherwise, the default double fill value is used
(defined in the netCDF header <file>netcdf.h</file> as
<code>NC_FILL_DOUBLE = 9.969e+36</code>).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1008">Bessel function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1009"><var>gsl_sf_bessel_Jn</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1010">Bessel function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1011"><var>gsl_sf_bessel_Jn</var></indexterm></cindex>
<noindent></noindent> <para>Consider a call to a Bessel function with <acronym><acronymword>GSL</acronymword></acronym>
prototype&linebreak;
<code>int gsl_sf_bessel_Jn_e(int n, double x, gsl_sf_result * result)</code>
@@ -10852,7 +10882,7 @@ dimension, so <code>n_in</code> in can be broadcast to conform to
<code>three_dmn_var_dbl</code>.
However <code>time_out=gsl_sf_bessel_Jn(n_in,time)</code> is invalid.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1010">Elliptic integrals</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1012">Elliptic integrals</indexterm></cindex>
<para>Consider the elliptical integral with prototype
<code>int gsl_sf_ellint_RD_e(double x, double y, double z, gsl_mode_t mode, gsl_sf_result * result)</code>
</para><example endspaces=" ">
@@ -10893,7 +10923,7 @@ Zero indicates success.
</para>
<noindent></noindent> <para>Consider another array function &linebreak;
<code>int gsl_sf_legendre_Pl_array( int lmax, double x, double *result_array);</code>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1011">Legendre polynomial</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1013">Legendre polynomial</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="17" mergedindex="cp">gsl_sf_legendre_Pl</indexterm></findex>
</para><example endspaces=" ">
<pre xml:space="preserve">a1=time.double();
@@ -11205,7 +11235,7 @@ prototypes look at the spreadsheet <strong>doc/nco_gsl.ods</strong>. &linebreak;
</subsection>
<node name="GSL-interpolation" spaces=" "><nodename>GSL interpolation</nodename><nodenext spaces=" ">GSL least-squares fitting</nodenext><nodeprev spaces=" ">GSL special functions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>GSL interpolation</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1012"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1014"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
<noindent></noindent> <para>As of version 3.9.9 (released July, 2009), <acronym><acronymword>NCO</acronymword></acronym> has wrappers to the <acronym><acronymword>GSL</acronymword></acronym> interpolation functions.
</para>
<noindent></noindent> <para>Given a set of data points (x1,y1)...(xn, yn) the <acronym><acronymword>GSL</acronymword></acronym> functions computes a continuous interpolating function <acronym><acronymword>Y(x)</acronymword></acronym> such that <acronym><acronymword>Y(xi) = yi</acronymword></acronym>. The interpolation is piecewise smooth, and its behavior at the end-points is determined by the type of interpolation used. For more information consult the <acronym><acronymword>GSL</acrony [...]
@@ -11570,8 +11600,8 @@ statements chained together as a single <samp>-s</samp> argument.
<html endspaces=" ">
<a name="xmp_grw"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_grw &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1013">growing dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1014">dimensions, growing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1015">growing dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1016">dimensions, growing</indexterm></cindex>
<para><command>ncap2</command> may be used to &textldquo;grow&textrdquo; dimensions, i.e., to increase
dimension sizes without altering existing data.
Say <file>in.nc</file> has <code>ORO(lat,lon)</code> and the user wishes a new
@@ -11594,7 +11624,7 @@ and then execute the script with
<html endspaces=" ">
<a name="flg"></a> <!&textndash; http://nco.sf.net/nco.html#flg &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1015">flags</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1017">flags</indexterm></cindex>
<para>Imagine you wish to create a binary flag based on the value of
an array.
The flag should have <w>value 1.0</w> where the array <w>exceeds 1.0</w>,
@@ -11609,7 +11639,7 @@ from the continuous array named <code>ORO</code> in <file>in.nc</file>.
</para><example endspaces=" ">
<pre xml:space="preserve">ncap2 -s 'ORO_msk=(ORO==2.0);ORO=ORO_msk*3.0+!ORO_msk*ORO' in.nc out.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1016">mask</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1018">mask</indexterm></cindex>
<para>This creates and uses <code>ORO_msk</code> to mask the subsequent arithmetic
operation.
Values of <code>ORO</code> are only changed where <code>ORO_msk</code> is true,
@@ -11626,7 +11656,7 @@ Using the <code>where</code> statement the above code simplifies to :
variables.
Let the variables <var>u</var> and <var>v</var> be the horizontal
wind components.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1017">covariance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1019">covariance</indexterm></cindex>
<!-- c fxm 20030423: texi2html 1.64 has problems with this legal syntax but makeinfo -html does not -->
The <dfn>covariance</dfn> of <var>u</var> and <var>v</var> is defined
as the time mean product of the deviations of <var>u</var> and
@@ -11649,7 +11679,7 @@ where <math>[<var>x</var>]</math> denotes the time-average of
denotes the deviation from the time-mean.
The covariance tells us how much of the correlation of two signals
arises from the signal fluctuations versus the mean signals.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1018">eddy covariance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1020">eddy covariance</indexterm></cindex>
Sometimes this is called the <dfn>eddy covariance</dfn>.
We will store the covariance in the variable <code>uprmvprm</code>.
</para><example endspaces=" ">
@@ -11674,11 +11704,11 @@ can compute averages, and thus covariances, by itself:
<para>We have not seen a simpler method to script and execute powerful
arithmetic than <command>ncap2</command>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1019">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1020">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1021">quotes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1022">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1023">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1021">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1022">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1023">quotes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1024">extended regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1025">regular expressions</indexterm></cindex>
<para><command>ncap2</command> utilizes many meta-characters
(e.g., <samp>$</samp>, <samp>?</samp>, <samp>;</samp>, <samp>()</samp>, <samp>[]</samp>)
that can confuse the command-line shell if not quoted properly.
@@ -11709,13 +11739,13 @@ variables in <command>ncap2</command> command-line scripts
In such cases it may be necessary to use the shell backslash character
<samp>\</samp> to protect the <command>ncap2</command> meta-character.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1024">appending data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1025">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1026">appending data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1027">time-averaging</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="18" mergedindex="cp">ncks</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="19" mergedindex="cp">ncwa</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="20" mergedindex="cp">ncra</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1026">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1027"><samp>-b</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1028">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1029"><samp>-b</samp></indexterm></cindex>
<para>A dimension of size one is said to be <emph>degenerate</emph>.
Whether a degenerate record dimension is desirable or not
depends on the application.
@@ -11733,7 +11763,7 @@ and <code>vavg</code> to the size of the non-degenerate <var>time</var> dimensio
in the input file.
Thus the append (<command>ncks -A</command>) command would be undefined (and
should fail) in this case.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1028"><code>-C</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1030"><code>-C</code></indexterm></cindex>
Equally important is the <samp>-C</samp> argument
(<pxref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></pxref>) to <command>ncwa</command> to prevent
any scalar <var>time</var> variable from being written to the output file.
@@ -11748,78 +11778,78 @@ Knowing when to use <command>ncwa -a time</command> rather than the default
<subsection spaces=" "><sectiontitle>Intrinsic mathematical methods</sectiontitle>
<para><command>ncap2</command> supports the standard mathematical functions supplied with
most operating systems.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1029">addition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1030">subtraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1031">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1032">division</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1033">exponentiation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1034">power</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1035">modulus</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1036"><code>+</code> (addition)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1037"><code>-</code> (subtraction)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1038"><code>*</code> (multiplication)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1039"><code>/</code> (division)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1040"><code>^</code> (power)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1041"><code>%</code> (modulus)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1031">addition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1032">subtraction</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1033">multiplication</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1034">division</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1035">exponentiation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1036">power</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1037">modulus</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1038"><code>+</code> (addition)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1039"><code>-</code> (subtraction)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1040"><code>*</code> (multiplication)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1041"><code>/</code> (division)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1042"><code>^</code> (power)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1043"><code>%</code> (modulus)</indexterm></cindex>
Standard calculator notation is used for addition <kbd>+</kbd>, subtraction
<kbd>-</kbd>, multiplication <kbd>*</kbd>, division <kbd>/</kbd>, exponentiation
<kbd>^</kbd>, and modulus <kbd>%</kbd>.
The available elementary mathematical functions are:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1042"><var>abs</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1043"><var>acosh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1044"><var>acos</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1045"><var>asinh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1046"><var>asin</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1047"><var>atanh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1048"><var>atan</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1049"><var>ceil</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1050"><var>cosh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1051"><var>cos</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1052"><var>erfc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1053"><var>erf</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1054"><var>exp</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1055"><var>floor</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1056"><var>gamma</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1057"><var>ln</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1058"><var>log10</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1059"><var>log</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1060"><var>nearbyint</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1061"><var>pow</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1062"><var>rint</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1063"><var>round</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1064"><var>sinh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1065"><var>sin</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1066"><var>sqrt</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1067"><var>tanh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1068"><var>tan</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1069"><var>trunc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1070">mathematical functions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1071">nearest integer function (inexact)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1072">nearest integer function (exact)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1073">rounding functions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1074">truncation function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1075">absolute value</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1076">arccosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1077">arcsine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1078">arctangent function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1079">ceiling function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1080">complementary error function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1081">cosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1082">error function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1083">exponentiation function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1084">floor function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1085">gamma function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1086">hyperbolic arccosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1087">hyperbolic arcsine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1088">hyperbolic arctangent function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1089">hyperbolic cosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1090">hyperbolic sine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1091">hyperbolic tangent</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1092">logarithm, base 10</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1093">logarithm, natural</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1094">power function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1095">sine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1096">square root function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1044"><var>abs</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1045"><var>acosh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1046"><var>acos</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1047"><var>asinh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1048"><var>asin</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1049"><var>atanh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1050"><var>atan</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1051"><var>ceil</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1052"><var>cosh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1053"><var>cos</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1054"><var>erfc</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1055"><var>erf</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1056"><var>exp</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1057"><var>floor</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1058"><var>gamma</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1059"><var>ln</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1060"><var>log10</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1061"><var>log</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1062"><var>nearbyint</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1063"><var>pow</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1064"><var>rint</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1065"><var>round</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1066"><var>sinh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1067"><var>sin</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1068"><var>sqrt</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1069"><var>tanh</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1070"><var>tan</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1071"><var>trunc</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1072">mathematical functions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1073">nearest integer function (inexact)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1074">nearest integer function (exact)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1075">rounding functions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1076">truncation function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1077">absolute value</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1078">arccosine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1079">arcsine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1080">arctangent function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1081">ceiling function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1082">complementary error function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1083">cosine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1084">error function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1085">exponentiation function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1086">floor function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1087">gamma function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1088">hyperbolic arccosine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1089">hyperbolic arcsine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1090">hyperbolic arctangent function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1091">hyperbolic cosine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1092">hyperbolic sine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1093">hyperbolic tangent</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1094">logarithm, base 10</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1095">logarithm, natural</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1096">power function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1097">sine function</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1098">square root function</indexterm></cindex>
</para><table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">abs(x)</itemformat></item>
</tableterm><tableitem><para><dfn>Absolute value</dfn>
@@ -12018,7 +12048,7 @@ log$(10.0) = 1.0$
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">nearbyint(x)</itemformat></item>
</tableterm><tableitem><para><dfn>Round inexactly</dfn>
Nearest integer to <var>x</var> is returned in floating point format.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1097">inexact conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1099">inexact conversion</indexterm></cindex>
No exceptions are raised for <dfn>inexact conversions</dfn>.
Example:
<tex endspaces=" ">
@@ -12027,8 +12057,8 @@ nearbyint$(0.1) = 0.0$
<math>nearbyint(0.1) = 0.0</math>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pow(x,y)</itemformat></item>
</tableterm><tableitem><para><dfn>Power</dfn>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1098">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1099">automatic type conversion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1100">promotion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1101">automatic type conversion</indexterm></cindex>
Value of <var>x</var> is raised to the power of <var>y</var>.
Exceptions are raised for <dfn>domain errors</dfn>.
Due to type-limitations in the <w>C language</w> <code>pow</code> function,
@@ -12117,14 +12147,14 @@ platform-specific.
Functions mandated by <w>ANSI C</w> are <emph>guaranteed</emph> to be present
and are indicated with an asterisk
<!-- c fxm No they're not, not yet -->
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1100"><code>ANSI C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1101"><code>float</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1102">precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1103">quadruple-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1104">single-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1105">double-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1106"><code>long double</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1107"><code>NC_DOUBLE</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1102"><code>ANSI C</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1103"><code>float</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1104">precision</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1105">quadruple-precision</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1106">single-precision</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1107">double-precision</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1108"><code>long double</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1109"><code>NC_DOUBLE</code></indexterm></cindex>
<footnote spaces="\n"><para><w>ANSI C</w> compilers are guaranteed to support double-precision versions
of these functions.
These functions normally operate on netCDF variables of type <code>NC_DOUBLE</code>
@@ -12142,12 +12172,12 @@ performing the operation, and then re-casting.
available, and uses the casting method when they are not.
</para></footnote>.
and are indicated with an asterisk.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1108"><code>-f</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1109"><code>--prn_fnc_tbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1110"><code>--fnc_tbl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1110"><code>-f</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1111"><code>--prn_fnc_tbl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1112"><code>--fnc_tbl</code></indexterm></cindex>
Use the <samp>-f</samp> (or <samp>fnc_tbl</samp> or <samp>prn_fnc_tbl</samp>) switch
to print a complete list of functions supported on your platform.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1111">Linux</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1113">Linux</indexterm></cindex>
<footnote><para>Linux supports more of these intrinsic functions than
other OSs.</para></footnote>
</para>
@@ -12208,7 +12238,7 @@ other OSs.</para></footnote>
</subsection>
<node name="ID-Quoting" spaces=" "><nodename>ID Quoting</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" " trailingspaces=" ">Operator precedence and associativity</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
<subsection spaces=" "><sectiontitle>ID Quoting</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1112">ID Quoting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1114">ID Quoting</indexterm></cindex>
<para>In this section when I refer to a name I mean a variable name, attribute name or a dimension name
The allowed characters in a valid netCDF name vary from release to release. (See end section). If you want to use metacharacters in a name or use a method name as a variable name then the name has to be quoted wherever it occurs.
</para>
@@ -12281,9 +12311,9 @@ netcdf-4.0 Final 2008/08/28&linebreak;
</section>
<node name="ncatted-netCDF-Attribute-Editor" spaces=" "><nodename>ncatted netCDF Attribute Editor</nodename><nodenext spaces=" ">ncbo netCDF Binary Operator</nodenext><nodeprev spaces=" ">ncap2 netCDF Arithmetic Processor</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncatted</command> netCDF Attribute Editor</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1113">attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1114">attribute names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1115">editing attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1115">attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1116">attribute names</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1117">editing attributes</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="21" mergedindex="cp">ncatted</indexterm></findex>
<noindent></noindent>
@@ -12297,7 +12327,7 @@ netcdf-4.0 Final 2008/08/28&linebreak;
<noindent></noindent>
<para>DESCRIPTION
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1116"><command>ncattget</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1118"><command>ncattget</command></indexterm></cindex>
<para><command>ncatted</command> edits attributes in a netCDF file.
If you are editing attributes then you are spending too much time in the
world of metadata, and <command>ncatted</command> was written to get you back out as
@@ -12312,16 +12342,16 @@ To <emph>read</emph> attribute values in plain text, use <command>ncks -m -M</co
or define something like <command>ncattget</command> as a shell command
(<pxref label="Filters-for-ncks"><xrefnodename>Filters for <command>ncks</command></xrefnodename></pxref>).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1117"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1118"><code>-h</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1119"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1120"><code>-h</code></indexterm></cindex>
<para>Because repeated use of <command>ncatted</command> can considerably increase the size
of the <code>history</code> global attribute (<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>), the
<samp>-h</samp> switch is provided to override automatically appending the
command to the <code>history</code> global attribute in the <var>output-file</var>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1119">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1120">data, missing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1121"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1121">missing values</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1122">data, missing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1123"><code>_FillValue</code></indexterm></cindex>
<para>When <command>ncatted</command> is used to change the <code>_FillValue</code> attribute,
it changes the associated missing data self-consistently.
If the internal floating point representation of a missing value,
@@ -12349,10 +12379,10 @@ Example: <code>units</code>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">var_nm</itemformat></item>
</tableterm><tableitem><para>Variable name.
Example: <code>pressure</code>, <code>'^H2O'</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1122">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1123">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1124">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1125">wildcards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1124">extended regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1125">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1126">pattern matching</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1127">wildcards</indexterm></cindex>
Regular expressions (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>) are accepted and will
select any matching variable names.
The names <code>global</code> and <code>group</code> have special meaning.
@@ -12383,8 +12413,8 @@ If <var>att_nm</var> is omitted (i.e., left blank) and <dfn>Delete</dfn> mode is
selected, then all attributes associated with the specified variable
will be deleted.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1126">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1127">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1128">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1129">attributes, global</indexterm></cindex>
<para>The value of <var>var_nm</var> is the name of the variable containing the
attribute (named <var>att_nm</var>) that you want to edit.
There are three very important and useful exceptions to this rule.
@@ -12412,12 +12442,12 @@ conventions you use for describing the data.
<para>The value of <var>mode</var> is a single character abbreviation (<code>a</code>,
<code>c</code>, <code>d</code>, <code>m</code>, or <code>o</code>) standing for one of
five editing modes:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1128">attributes, appending</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1129">attributes, creating</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1130">attributes, deleting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1131">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1132">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1133">attributes, overwriting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1130">attributes, appending</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1131">attributes, creating</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1132">attributes, deleting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1133">attributes, modifying</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1134">attributes, editing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1135">attributes, overwriting</indexterm></cindex>
</para><table commandarg="code" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="code">a </itemformat></item>
</tableterm><tableitem><para><dfn>Append</dfn>.
@@ -12537,15 +12567,15 @@ The quotes are strictly unnecessary around <var>att_val</var> except
when <var>att_val</var> contains characters which would confuse the calling
shell, such as spaces, commas, and wildcard characters.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1134">Perl</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1135"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1136">Perl</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1137"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> processing of <code>NC_CHAR</code> attributes is a bit like Perl in
that it attempts to do what you want by default (but this sometimes
causes unexpected results if you want unusual data storage).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1136"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1137"><code>\n</code> (<acronym><acronymword>ASCII</acronymword></acronym> LF, linefeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1138">characters, special</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1139"><code>\t</code> (<acronym><acronymword>ASCII</acronymword></acronym> HT, horizontal tab)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1138"><code>printf()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1139"><code>\n</code> (<acronym><acronymword>ASCII</acronymword></acronym> LF, linefeed)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1140">characters, special</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1141"><code>\t</code> (<acronym><acronymword>ASCII</acronymword></acronym> HT, horizontal tab)</indexterm></cindex>
If the <var>att_type</var> is <code>NC_CHAR</code> then the argument is interpreted as a
string and it may contain C-language escape sequences, e.g., <code>\n</code>,
which <acronym><acronymword>NCO</acronymword></acronym> will interpret before writing anything to disk.
@@ -12559,27 +12589,27 @@ The most frequently used C-language escape sequences are <code>\n</code> (for
linefeed) and <code>\t</code> (for horizontal tab).
These sequences in particular allow convenient editing of formatted text
attributes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1140"><code>\a</code> (<acronym><acronymword>ASCII</acronymword></acronym> BEL, bell)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1141"><code>\b</code> (<acronym><acronymword>ASCII</acronymword></acronym> BS, backspace)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1142"><code>\f</code> (<acronym><acronymword>ASCII</acronymword></acronym> FF, formfeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1143"><code>\r</code> (<acronym><acronymword>ASCII</acronymword></acronym> CR, carriage return)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1144"><code>\v</code> (<acronym><acronymword>ASCII</acronymword></acronym> VT, vertical tab)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1145"><code>\\</code> (<acronym><acronymword>ASCII</acronymword></acronym> \, backslash)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1142"><code>\a</code> (<acronym><acronymword>ASCII</acronymword></acronym> BEL, bell)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1143"><code>\b</code> (<acronym><acronymword>ASCII</acronymword></acronym> BS, backspace)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1144"><code>\f</code> (<acronym><acronymword>ASCII</acronymword></acronym> FF, formfeed)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1145"><code>\r</code> (<acronym><acronymword>ASCII</acronymword></acronym> CR, carriage return)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1146"><code>\v</code> (<acronym><acronymword>ASCII</acronymword></acronym> VT, vertical tab)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1147"><code>\\</code> (<acronym><acronymword>ASCII</acronymword></acronym> \, backslash)</indexterm></cindex>
The other valid <acronym><acronymword>ASCII</acronymword></acronym> codes are <code>\a</code>, <code>\b</code>, <code>\f</code>,
<code>\r</code>, <code>\v</code>, and <code>\\</code>.
<xref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></xref>, for more examples of string formatting
(with the <command>ncks</command> <samp>-s</samp> option) with special characters.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1146"><code>\'</code> (protected end quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1147"><code>\"</code> (protected double quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1148"><code>\?</code> (protected question mark)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1149"><code>\\</code> (protected backslash)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1150"><code>'</code> (end quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1151"><code>"</code> (double quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1152"><code>?</code> (question mark)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1153"><code>\</code> (backslash)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1154">special characters</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1155"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1148"><code>\'</code> (protected end quote)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1149"><code>\"</code> (protected double quote)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1150"><code>\?</code> (protected question mark)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1151"><code>\\</code> (protected backslash)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1152"><code>'</code> (end quote)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1153"><code>"</code> (double quote)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1154"><code>?</code> (question mark)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1155"><code>\</code> (backslash)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1156">special characters</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1157"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
<para>Analogous to <code>printf</code>, other special characters are also allowed by
<command>ncatted</command> if they are "protected" by a backslash.
The characters <code>"</code>, <code>'</code>, <code>?</code>, and <code>\</code> may be
@@ -12591,11 +12621,11 @@ Backslashes which precede any other character (e.g., <code>3</code>, <code>m</co
<code>$</code>, <code>|</code>, <code>&</code>, <code>&arobase;</code>, <code>%</code>, <code>{</code>, and
<code>}</code>) will not be filtered and will be included in the attribute.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1156">strings</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1157">NUL-termination</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1158">NUL</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1159">C language</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1160"><code>0</code> (NUL)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1158">strings</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1159">NUL-termination</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1160">NUL</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1161">C language</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1162"><code>0</code> (NUL)</indexterm></cindex>
<para>Note that the NUL character <code>\0</code> which terminates <w>C language</w>
strings is assumed and need not be explicitly specified.
<!-- comment If @code{\0} is input, it will not be translated (because it would -->
@@ -12635,9 +12665,9 @@ from whatever it currently is to "temperature":
<html endspaces=" ">
<a name="NaN"></a> <!&textndash; http://nco.sf.net/nco.html#NaN &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1161">NaN</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1162">IEEE NaN</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1163">Not-a-Number</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1163">NaN</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1164">IEEE NaN</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1165">Not-a-Number</indexterm></cindex>
<para><acronym><acronymword>NCO</acronymword></acronym> arithmetic operators will not work as expected on IEEE
NaN (short for Not-a-Number) and NaN-like numbers such as positive
infinity and negative infinity.
@@ -12666,9 +12696,9 @@ variables in the file.
The values of <var>att_type</var> and <var>att_val</var> were left blank because
they are superfluous in <dfn>Delete</dfn> mode.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1164"><code>global</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1165">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1166">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1166"><code>global</code> attribute</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1167">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1168">attributes, global</indexterm></cindex>
<para>Delete all attributes associated with the <code>tpt</code> variable, and
delete all global attributes
</para><example endspaces=" ">
@@ -12680,13 +12710,13 @@ attributes associated with the variable.
To delete all global attributes, simply replace <code>tpt</code> with
<code>global</code> in the above.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1167"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1169"><code>units</code></indexterm></cindex>
<para>Modify all existing <code>units</code> attributes to "meter second-1":
</para><example endspaces=" ">
<pre xml:space="preserve">ncatted -a units,,m,c,"meter second-1" in.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1168"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1170"><code>units</code></indexterm></cindex>
<para>Add a <code>units</code> attribute of "kilogram kilogram-1" to all variables
whose first three characters are <samp>H2O</samp>:
</para><example endspaces=" ">
@@ -12699,10 +12729,10 @@ whose first three characters are <samp>H2O</samp>:
<pre xml:space="preserve">ncatted -O -a quanta,energy,o,s,"010,101,111,121" in.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1169">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1170">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1171">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1172">wildcards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1171">extended regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1172">regular expressions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1173">pattern matching</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1174">wildcards</indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> 3.9.6 (January, 2009), <command>ncatted</command> accepts
<dfn>extended regular expressions</dfn> as arguments for variable names.
Create <code>isotope</code> attributes for all variables containing <samp>H2O</samp>
@@ -12712,7 +12742,7 @@ in their names.
</pre></example>
<para>See <ref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></ref> for more details.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1173">groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1175">groups</indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> 4.3.8 (November, 2013), <command>ncatted</command>
accepts full and partial group paths in names of attributes,
variables, dimensions, and groups.
@@ -12771,14 +12801,14 @@ omitted in batch scripts.
<findex index="fn" spaces=" "><indexterm index="fn" number="27" mergedindex="cp">ncmult</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="28" mergedindex="cp">ncmultiply</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="29" mergedindex="cp">ncdivide</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1174">binary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1175">addition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1176">subtraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1177">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1178">adding data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1179">subtracting data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1180">multiplying data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1181">dividing data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1176">binary operations</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1177">addition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1178">subtraction</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1179">multiplication</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1180">adding data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1181">subtracting data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1182">multiplying data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1183">dividing data</indexterm></cindex>
<noindent></noindent>
<para>SYNTAX
@@ -12805,18 +12835,18 @@ variables).
One of the four standard arithmetic binary operations currently
supported must be selected with the <samp>-y <var>op_typ</var></samp> switch (or
long options <samp>--op_typ</samp> or <samp>--operation</samp>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1182"><code>add</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1183"><code>subtract</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1184"><code>multiply</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1185"><code>divide</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1186"><code>+</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1187"><code>-</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1188"><code>*</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1189"><code>/</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1190"><code>-y <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1191"><code>--operation <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1192"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1193">alternate invocations</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1184"><code>add</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1185"><code>subtract</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1186"><code>multiply</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1187"><code>divide</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1188"><code>+</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1189"><code>-</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1190"><code>*</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1191"><code>/</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1192"><code>-y <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1193"><code>--operation <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1194"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1195">alternate invocations</indexterm></cindex>
The valid binary operations for <command>ncbo</command>, their definitions,
corresponding values of the <var>op_typ</var> key, and alternate invocations
are:
@@ -12847,12 +12877,12 @@ Examples: <samp>ncbo --op_typ=/ 1.nc 2.nc 3.nc</samp>, <samp>ncdivide 1.nc 2.nc
<para>Care should be taken when using the shortest form of key values,
i.e., <samp>+</samp>, <samp>-</samp>, <samp>*</samp>, <w>and <samp>/</samp></w>.
Some of these single characters may have special meanings to the shell
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1194">naked characters</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1196">naked characters</indexterm></cindex>
<footnote><para><w>A naked</w> (i.e., unprotected or unquoted) <samp>*</samp> is a
wildcard character.
<w>A naked</w> <samp>-</samp> may confuse the command line parser.
<w>A naked</w> <samp>+</samp> and <samp>/</samp> are relatively harmless.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1195">Bash shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1197">Bash shell</indexterm></cindex>
Place these characters inside quotes to keep them from being interpreted
(globbed) by the shell
<footnote><para>The widely used shell Bash correctly interprets all these
@@ -12862,9 +12892,9 @@ the intended arithmetic operation when the following arguments are given
(without quotes) to <command>ncbo</command>:
<samp>--op_typ=+</samp>, <samp>--op_typ=-</samp>, <samp>--op_typ=*</samp>,
and <samp>--op_typ=/</samp></para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1196">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1197">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1198">quotes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1198">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1199">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1200">quotes</indexterm></cindex>
For example, the following commands are equivalent
</para><example endspaces=" ">
<pre xml:space="preserve">ncbo --op_typ=* 1.nc 2.nc 3.nc # Dangerous (shell may try to glob)
@@ -12880,9 +12910,9 @@ ncmultiply 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmultiply'
<para>No particular argument or invocation form is preferred.
Users are encouraged to use the forms which are most intuitive to them.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1199"><command>alias</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1200"><command>ln -s</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1201">symbolic links</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1201"><command>alias</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1202"><command>ln -s</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1203">symbolic links</indexterm></cindex>
<para>Normally, <command>ncbo</command> will fail unless an operation type is specified
with <samp>-y</samp> (equivalent to <samp>--op_typ</samp>).
You may create exceptions to this rule to suit your particular tastes,
@@ -12924,12 +12954,12 @@ This ensures portability of scripts between users and sites.
<html endspaces=" ">
<a name="brd_var"></a> <!&textndash; http://nco.sf.net/nco.html#brd_var &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1202">broadcasting variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1203">rank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1204">broadcasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1205">rank</indexterm></cindex>
<para><command>ncbo</command> operates (e.g., adds) variables in <var>file_2</var> with the
corresponding variables (those with the same name) in <var>file_1</var> and
stores the results in <var>file_3</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1204">broadcasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1206">broadcasting variables</indexterm></cindex>
Variables in <var>file_1</var> or <var>file_2</var> are <dfn>broadcast</dfn> to conform
to the corresponding variable in the other input file if
necessary<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> version 4.3.1 (May, 2013), <command>ncbo</command>
@@ -12952,12 +12982,12 @@ by copying data in existing dimensions.
For example, a two dimensional variable in <var>file_2</var> can be
subtracted from a four, three, or two (not one or zero)
dimensional variable (of the same name) in <code>file_1</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1205">anomalies</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1207">anomalies</indexterm></cindex>
This functionality allows the user to compute anomalies from the mean.
In the future, we will broadcast variables in <var>file_1</var>, if necessary
to conform to their counterparts in <var>file_2</var>.
<!-- c TODO #268 -->
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1206">rank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1208">rank</indexterm></cindex>
Thus, presently, the number of dimensions, or <dfn>rank</dfn>, of any
processed variable in <var>file_1</var> must be greater than or equal to the
rank of the same variable in <var>file_2</var>.
@@ -12977,8 +13007,8 @@ If <var>file_2</var> were created by averaging <var>file_1</var> over the
the <command>ncwa</command> operator, then <var>file_2</var> will have a <code>time</code>
dimension of <w>size 1</w> rather than having no <code>time</code> dimension at
all
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1207">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1208"><samp>-b</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1209">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1210"><samp>-b</samp></indexterm></cindex>
<footnote><para>This is because <command>ncra</command> collapses the record dimension
to a size <w>of 1</w> (making it a <dfn>degenerate</dfn> dimension), but does
not remove it, while, unless <samp>-b</samp> is given, <command>ncwa</command> removes
@@ -12992,14 +13022,14 @@ To prevent this from occuring, use <command>ncwa</command> to remove the
<code>time</code> dimension from <var>file_2</var>.
See the example below.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1209">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1210"><code>NC_CHAR</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1211">coordinate variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1212"><code>NC_CHAR</code></indexterm></cindex>
<para><command>ncbo</command> never operates on coordinate variables or variables
of type <code>NC_CHAR</code> or <code>NC_STRING</code>.
This ensures that coordinates like (e.g., latitude and longitude) are
physically meaningful in the output file, <var>file_3</var>.
This behavior is hardcoded.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1211"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1213"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
<command>ncbo</command> applies special rules to some
<acronym><acronymword>CF</acronymword></acronym>-defined (and/or <acronym><acronymword>NCAR CCSM</acronymword></acronym> or <acronym><acronymword>NCAR CCM</acronymword></acronym>
fields) such as <code>ORO</code>.
@@ -13015,7 +13045,7 @@ albeit in a more convoluted way than <command>ncbo</command>.
<a name="gb"></a> <!&textndash; http://nco.sf.net/nco.html#gb &textndash;>
<a name="GB"></a> <!&textndash; http://nco.sf.net/nco.html#GB &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1212">broadcasting groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1214">broadcasting groups</indexterm></cindex>
<para>Beginning with <acronym><acronymword>NCO</acronymword></acronym> version 4.3.1 (May, 2013), <command>ncbo</command>
supports <dfn>group broadcasting</dfn>.
Group broadcasting means processing data based on group patterns in the
@@ -13050,8 +13080,8 @@ ncbo --op_typ='-' 86_0112.nc 85_0112.nc 86m85_0112.nc
<noindent></noindent>
<para>These commands are all different ways of expressing the same thing.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1213">broadcasting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1214">rank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1215">broadcasting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1216">rank</indexterm></cindex>
<para>The following examples demonstrate the broadcasting feature of
<command>ncbo</command>.
Say we wish to compute the monthly anomalies of <code>T</code> from the yearly
@@ -13098,7 +13128,7 @@ ncdiff 85_0112.nc 85_x.nc tx_anm_85_0112.nc
<code>time</code> and <code>lon</code>, and that <file>85_x.nc</file> has no <code>time</code>
or <code>lon</code> dimension.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1215">broadcasting groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1217">broadcasting groups</indexterm></cindex>
<para>Group broadcasting simplifies evaluation of multiple models against
observations.
Consider the input file <file>cmip5.nc</file> which contains multiple
@@ -13151,9 +13181,9 @@ one file, and use <command>ncra</command> to create the average anomaly for all
five Januarys.
These commands are embedded in a shell loop so they are repeated for all
twelve months:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1216">Bash Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1217">Bourne Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1218">C Shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1218">Bash Shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1219">Bourne Shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1220">C Shell</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">for idx in {1..12}; do # Bash Shell (version 3.0+)
idx=`printf "%02d" ${idx}` # Zero-pad to preserve order
@@ -13192,8 +13222,8 @@ seasonal cycle of the monthly anomalies:
</section>
<node name="nces-netCDF-Ensemble-Statistics" spaces=" "><nodename>nces netCDF Ensemble Statistics</nodename><nodenext spaces=" ">ncecat netCDF Ensemble Concatenator</nodenext><nodeprev spaces=" ">ncbo netCDF Binary Operator</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>nces</command> netCDF Ensemble Statistics</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1219">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1220">ensemble average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1221">averaging data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1222">ensemble average</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="30" mergedindex="cp">nces</indexterm></findex>
<noindent></noindent>
@@ -13223,7 +13253,7 @@ released December, 2013.
<acronym><acronymword>NCO</acronymword></acronym> will attempt to maintain back-compatibility and work
as expected with invocations of <command>ncea</command> for as long as possible.
Please replace <command>ncea</command> by <command>nces</command> in all future work.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1221">ensemble</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1223">ensemble</indexterm></cindex>
For example, <command>nces</command> will average a set of files or groups,
weighting each file or group evenly.
This is distinct from <command>ncra</command>, which performs statistics only
@@ -13253,17 +13283,17 @@ the hypserslabs may (and usually do) change the size of the dimensions
from the input to the output files.
Prior to this, <command>nces</command> was only guaranteed to work on hyperslabs
in the record dimension that resolved to the same size.</para></footnote>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1222">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1223">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1224">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1225">hyperslab</indexterm></cindex>
<command>nces</command> does allow files to differ in the record dimension size
if the requested record hyperslab (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) resolves to the
same size for all files.
<command>nces</command> recomputes the record dimension hyperslab limits for
each input file so that coordinate limits may be used to select equal
length timeseries from unequal length files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1224"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1225"><acronym><acronymword>AR4</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1226"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1226"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1227"><acronym><acronymword>AR4</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1228"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
This simplifies analysis of unequal length timeseries from simulation
ensembles (e.g., the <acronym><acronymword>CMIP3</acronymword></acronym> <acronym><acronymword>IPCC</acronymword></acronym> <acronym><acronymword>AR4</acronymword></acronym>
archive).
@@ -13273,12 +13303,12 @@ archive).
<a name="nsm_grp"></a> <!&textndash; http://nco.sf.net/nco.html#nsm_grp &textndash;>
<a name="nsm_sfx"></a> <!&textndash; http://nco.sf.net/nco.html#nsm_sfx &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1227"><code>--nsm_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1228"><code>--nsm_grp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1229"><code>--ensemble_file</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1230"><code>--ensemble_group</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1231"><code>--nsm_sfx</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1232"><code>--ensemble_suffix</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1229"><code>--nsm_fl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1230"><code>--nsm_grp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1231"><code>--ensemble_file</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1232"><code>--ensemble_group</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1233"><code>--nsm_sfx</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1234"><code>--ensemble_suffix</code></indexterm></cindex>
<para><command>nces</command> works in one of two modes, file ensembles
or group ensembles.
File ensembles are the default (equivalent to the old <command>ncea</command>)
@@ -13316,9 +13346,9 @@ nces --nsm_grp --nsm_sfx='_avg' mdl1.nc mdl2.nc mdl3.nc out.nc
<para><xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
distinctions between the statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1233">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1234">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1235"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1235">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1236">standard input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1237"><code>stdin</code></indexterm></cindex>
As a multi-file operator, <command>nces</command> will read the list of
<var>input-files</var> from <code>stdin</code> if they are not specified
as positional arguments on the command line
@@ -13416,8 +13446,8 @@ member in the first file.
</section>
<node name="ncecat-netCDF-Ensemble-Concatenator" spaces=" "><nodename>ncecat netCDF Ensemble Concatenator</nodename><nodenext spaces=" ">ncflint netCDF File Interpolator</nodenext><nodeprev spaces=" ">nces netCDF Ensemble Statistics</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncecat</command> netCDF Ensemble Concatenator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1236">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1237">ensemble concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1238">concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1239">ensemble concatenation</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="31" mergedindex="cp">ncecat</indexterm></findex>
<noindent></noindent>
@@ -13439,12 +13469,13 @@ member in the first file.
<para><command>ncecat</command> aggregates an arbitrary number of input files into a
single output file using using one of two methods.
<dfn>Record AGgregation</dfn> (<acronym><acronymword>RAG</acronymword></acronym>), the traditional method employed on
-netCDF3 files and still the default method, stores <var>input-files</var> as
-consecutive records in the <var>output-file</var>.
+(flat) netCDF3 files and still the default method, stores
+<var>input-files</var> as consecutive records in the <var>output-file</var>.
<dfn>Group AGgregation</dfn> (<acronym><acronymword>GAG</acronymword></acronym>) stores <var>input-files</var> as top-level
groups in the netCDF4 <var>output-file</var>.
-Record Aggregation (<acronym><acronymword>RAG</acronymword></acronym>) makes numerous assumptions about the structure
-of input files and Group Aggregation (<acronym><acronymword>GAG</acronymword></acronym>) makes none.
+Record Aggregation (<acronym><acronymword>RAG</acronymword></acronym>) makes numerous assumptions about the
+structure of input files and Group Aggregation (<acronym><acronymword>GAG</acronymword></acronym>) makes
+none.
Both methods are described in detail below.
Since <command>ncecat</command> aggregates all the contents of the input files,
it can easily produce large output files so it is often helpful to invoke
@@ -13453,8 +13484,8 @@ subsetting simultaneously (<pxref label="Subsetting-Files"><xrefnodename>Subsett
<html endspaces=" ">
<a name="rag"></a> <!&textndash; http://nco.sf.net/nco.html#rag &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1238">record aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1239"><acronym><acronymword>RAG</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1240">record aggregation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1241"><acronym><acronymword>RAG</acronymword></acronym></indexterm></cindex>
<para><acronym><acronymword>RAG</acronymword></acronym> makes each variable (except coordinate variables) in each
input file into a single record of the same variable in the output file.
Coordinate variables are not concatenated, they are instead simply
@@ -13467,27 +13498,27 @@ data.
The new record dimension is defined in the root group of the output file
so it is visible to all sub-groups.
Its name is, by default, &textldquo;record&textrdquo;.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1240">unlimited dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1241">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1242"><samp>-u <var>ulm_nm</var></samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1243"><samp>--ulm_nm <var>ulm_nm</var></samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1244"><samp>--rcd_nm <var>ulm_nm</var></samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1242">unlimited dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1243">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1244"><samp>-u <var>ulm_nm</var></samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1245"><samp>--ulm_nm <var>ulm_nm</var></samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1246"><samp>--rcd_nm <var>ulm_nm</var></samp></indexterm></cindex>
This default name can be overridden with the <samp>-u <var>ulm_nm</var></samp>
short option (or the <samp>--ulm_nm</samp> or <samp>rcd_nm</samp> long options).
</para>
<para>Each extracted variable must be constant in size and rank across all
<var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1245">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1246">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1247">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1248">hyperslab</indexterm></cindex>
The only exception is that <command>ncecat</command> allows files to differ in
the record dimension size if the requested record hyperslab
(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) resolves to the same size for all files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1247"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1249"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
This allows easier gluing/averaging of unequal length timeseries from
simulation ensembles (e.g., the <acronym><acronymword>CMIP</acronymword></acronym> rchive).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1248">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1249">fix record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1250">fixed dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1251">fix record dimension</indexterm></cindex>
<para>Classic (i.e., all netCDF3 and <code>NETCDF4_CLASSIC</code>) output files
can contain only one record dimension.
<command>ncecat</command> makes room for the new glue record dimension by
@@ -13500,8 +13531,8 @@ if any, of the input files as it copies them to the output file.
<html endspaces=" ">
<a name="gag"></a> <!&textndash; http://nco.sf.net/nco.html#gag &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1250">group aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1251"><acronym><acronymword>GAG</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1252">group aggregation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1253"><acronym><acronymword>GAG</acronymword></acronym></indexterm></cindex>
<para><dfn>Group AGgregation</dfn> (<acronym><acronymword>GAG</acronymword></acronym>) stores <var>input-files</var> as
top-level groups in the <var>output-file</var>.
No assumption is made about the size or shape or type of a given
@@ -13510,7 +13541,7 @@ The entire contents of the extracted portion of each input file
is placed in its own top-level group in <var>output-file</var>, which
is automatically made as a netCDF4-format file.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1252"><option>--gag</option></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1254"><option>--gag</option></indexterm></cindex>
<para><acronym><acronymword>GAG</acronymword></acronym> has two methods to specify group names for the
<var>output-file</var>.
The <samp>-G</samp> option, or its long-option equivalent <samp>--gpe</samp>,
@@ -13539,17 +13570,17 @@ ncecat -G 85/ a.nc b.nc c.nc 8589.nc # Output groups 85/00, 85/01, 85/02
the sum of the sizes of the extracted variables in the input files.
<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1253">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1254">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1255"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1255">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1256">standard input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1257"><code>stdin</code></indexterm></cindex>
As a multi-file operator, <command>ncecat</command> will read the list of
<var>input-files</var> from <code>stdin</code> if they are not specified
as positional arguments on the command line
(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1256"><code>-M</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1257"><code>--glb_mtd_spp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1258">metadata, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1258"><code>-M</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1259"><code>--glb_mtd_spp</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1260">metadata, global</indexterm></cindex>
<para>Suppress global metadata copying.
By default <acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s multi-file operators copy the global metadata
from the first input file into <var>output-file</var>.
@@ -13563,7 +13594,7 @@ metadata.
metadata via the <samp>-M</samp> switch (or its long option equivalents,
<samp>--glb_mtd_spp</samp> and <samp>--global_metadata_suppress</samp>).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1259">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1261">climate model</indexterm></cindex>
<para>Consider five realizations, <file>85a.nc</file>, <file>85b.nc</file>,
<w>&dots; <file>85e.nc</file></w> of 1985 predictions from the same climate
model.
@@ -13578,10 +13609,10 @@ Normally this means all the input files are the same size, and contain
data on different realizations of the same variables.
</para>
<findex index="fn" spaces=" "><indexterm index="fn" number="32" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1260">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1261">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1262"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1263"><code>scale_factor</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1262">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1263">unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1264"><code>add_offset</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1265"><code>scale_factor</code></indexterm></cindex>
<para>Concatenating a variable packed with different scales across multiple
datasets is beyond the capabilities of <command>ncecat</command> (and
<command>ncrcat</command>, the other concatenator (<ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref>).
@@ -13642,10 +13673,10 @@ such descriptive coordinates are used.
<html endspaces=" ">
<a name="dmn_rcd_rm"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_rcd_rm &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1264">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1265">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1266">fix record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1267"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1266">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1267">fixed dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1268">fix record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1269"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
<para>Consider a file with an existing record dimension named <code>time</code>.
and suppose the user wishes to convert <code>time</code> from a record
dimension to a non-record dimension.
@@ -13654,7 +13685,7 @@ record variable.
The simplest method is to use <samp>ncks --fix_rec_dmn</samp> but another
possibility is to use <command>ncecat</command> followed by
<command>ncwa</command>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1268">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1270">degenerate dimension</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncecat in.nc out.nc # Convert time to non-record dimension
ncwa -a record in.nc out.nc # Remove new degenerate record dimension
@@ -13672,10 +13703,10 @@ of changing variable dimensionality, including the record dimension.
</section>
<node name="ncflint-netCDF-File-Interpolator" spaces=" "><nodename>ncflint netCDF File Interpolator</nodename><nodenext spaces=" ">ncks netCDF Kitchen Sink</nodenext><nodeprev spaces=" ">ncecat netCDF Ensemble Concatenator</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncflint</command> netCDF File Interpolator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1269">interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1270">adding data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1271">multiplying data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1272">addition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1271">interpolation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1272">adding data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1273">multiplying data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1274">addition</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="33" mergedindex="cp">ncflint</indexterm></findex>
<noindent></noindent>
@@ -13718,9 +13749,9 @@ $val3 = wgt1 \times val1 + wgt2 \times val2$
Here at least <var>wgt1</var>, and, optionally, <var>wgt2</var>, are specified on
the command line with the <samp>-w</samp> (or <samp>--weight</samp> or
<samp>--wgt_var</samp>) switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1273"><code>-w <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1274"><code>--weight <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1275"><code>--wgt_var <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1275"><code>-w <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1276"><code>--weight <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1277"><code>--wgt_var <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
If only <var>wgt1</var> is specified then <var>wgt2</var> is automatically
computed as <math><var>wgt2</var> = 1 − <var>wgt1</var></math>.
Note that weights larger <w>than 1</w> are allowed.
@@ -13739,7 +13770,7 @@ weights and adding together the results to produce the output values.
It makes sense to use this when the weights are known
<emph><w>a priori</w></emph>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1276">arrival value</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1278">arrival value</indexterm></cindex>
<para>Another class of problems has the <dfn>arrival value</dfn> (i.e., <var>val3</var>)
of a particular variable <var>var</var> known <emph><w>a priori</w></emph>.
In this case, the implied weights can always be inferred by examining
@@ -13762,7 +13793,7 @@ and <var>val3</var> with the <samp>-i</samp> option.
weights on all variables to generate the output file.
Although <var>var</var> may have any number of dimensions in the input
files, it must represent a single, scalar value.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1277">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1279">degenerate dimension</indexterm></cindex>
Thus any dimensions associated with <var>var</var> must be <dfn>degenerate</dfn>,
i.e., of size one.
</para>
@@ -13789,8 +13820,8 @@ in <acronym><acronymword>NCO</acronymword></acronym> version 4.2.6 (March, 2013)
It prevents <command>ncflint</command> from multiplying or interpolating any
coordinate variables, including record coordinate variables.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1278">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1279"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1280">missing values</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1281"><code>_FillValue</code></indexterm></cindex>
<para>Depending on your intuition, <command>ncflint</command> may treat missing values
unexpectedly.
Consider a point where the value in one input file, say <var>val1</var>,
@@ -13866,13 +13897,13 @@ together to make <file>tst.nc</file>:
<pre xml:space="preserve">ncflint -w 3,-2 85.nc 85.nc tst.nc
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1280">null operation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1282">null operation</indexterm></cindex>
<para>This is an example of a null operation, so <file>tst.nc</file> should be
identical (within machine precision) to <file>85.nc</file>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1281">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1282">file multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1283">scaling</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1283">multiplication</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1284">file multiplication</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1285">scaling</indexterm></cindex>
<para>Multiply all the variables except the coordinate variables in the file
<file>emissions.nc</file> by <w>by 0.8</w>:
</para><example endspaces=" ">
@@ -13892,14 +13923,14 @@ ncdiff 85.nc 86.nc 85m86.nc
<noindent></noindent>
<para>Thus <command>ncflint</command> can be used to mimic some <command>ncbo</command>
operations.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1284">broadcasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1286">broadcasting variables</indexterm></cindex>
However this is not a good idea in practice because <command>ncflint</command>
does not broadcast (<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>) conforming
variables during arithmetic.
Thus the final two commands would produce identical results except that
<command>ncflint</command> would fail if any variables needed to be broadcast.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1285"><code>units</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1287"><code>units</code></indexterm></cindex>
<para>Rescale the dimensional units of the surface pressure <code>prs_sfc</code>
from Pascals to hectopascals (millibars)
</para><example endspaces=" ">
@@ -13915,9 +13946,9 @@ ncatted -a units,prs_sfc,o,c,millibar out.nc
</section>
<node name="ncks-netCDF-Kitchen-Sink" spaces=" "><nodename>ncks netCDF Kitchen Sink</nodename><nodenext spaces=" ">ncpdq netCDF Permute Dimensions Quickly</nodenext><nodeprev spaces=" ">ncflint netCDF File Interpolator</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncks</command> netCDF Kitchen Sink</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1286">kitchen sink</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1287">printing files contents</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1288">printing variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1288">kitchen sink</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1289">printing files contents</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1290">printing variables</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="34" mergedindex="cp">ncks</indexterm></findex>
<noindent></noindent>
@@ -13929,7 +13960,7 @@ ncatted -a units,prs_sfc,o,c,millibar out.nc
[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-H] [-h] [--hdn] [--hdr_pad <var>nbr</var>]
[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [-m] [--mk_rec_dmn <var>dim</var>] [--md5_digest]
[--no_blank] [--no_tmp_fl] [-O] [-o <var>output-file</var>] [-P] [-p <var>path</var>]
-[-Q] [-q] [-R] [-r] [--ram_all] [-s <var>format</var>]
+[-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s <var>format</var>]
[-u] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x] [--xml]
<var>input-file</var> [[<var>output-file</var>]]
</pre></example>
@@ -13937,7 +13968,7 @@ ncatted -a units,prs_sfc,o,c,millibar out.nc
<noindent></noindent>
<para>DESCRIPTION
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1289"><command>ncextr</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1291"><command>ncextr</command></indexterm></cindex>
<para>The nickname &textldquo;kitchen sink&textrdquo; is a catch-all because <command>ncks</command>
combines most features of <command>ncdump</command> and <command>nccopy</command> with
extra features to extract, hyperslab, multi-slab, sub-set, and translate
@@ -13966,8 +13997,8 @@ including <acronym><acronymword>CDL</acronymword></acronym> and <acronym><acrony
<samp>-s</samp>, <samp>-u</samp>, <samp>--xml</samp> (and their long option counterparts)
control the formatted appearance of the data.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1290">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1291">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1292">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1293">attributes, global</indexterm></cindex>
<para><command>ncks</command> extracts (and optionally creates a new netCDF file
comprised of) only selected variables from the input file
(similar to the old <command>ncextr</command> specification).
@@ -13984,8 +14015,8 @@ Input dimensions that are not associated with any output variable do
not appear in the output netCDF.
This feature removes superfluous dimensions from netCDF files.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1292">appending data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1293">merging files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1294">appending data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1295">merging files</indexterm></cindex>
<para><command>ncks</command> will append variables and attributes from the
<var>input-file</var> to <var>output-file</var> if <var>output-file</var> is a
pre-existing netCDF file whose relevant dimensions conform to dimension
@@ -14012,8 +14043,8 @@ with the members of <var>output-file</var> then it will be added to
<var>output-file</var>.
In this case the relevant dimensions must agree (conform) between the
two files; new dimensions are created in <var>output-file</var> as required.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1294">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1295">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1296">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1297">attributes, global</indexterm></cindex>
When a name conflict occurs, a global attribute from <var>input-file</var>
will overwrite the corresponding global attribute from
<var>output-file</var>.
@@ -14061,8 +14092,9 @@ Features common to many operators are described in
<beforefirstitem>
<html endspaces=" ">
<a name="-5"></a> <!&textndash; http://nco.sf.net/nco.html#-5 &textndash;>
+<a name="5"></a> <!&textndash; http://nco.sf.net/nco.html#5 &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1296"><code>-5</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1298"><code>-5</code></indexterm></cindex>
</beforefirstitem><tableentry><tableterm><item spaces=" "><itemformat command="samp">-5 </itemformat></item>
</tableterm><tableitem><para>Print data to screen alphabetically by group, and alphabetically by
variable within each group.
@@ -14071,11 +14103,15 @@ and may be selected for traditional mode printing with <samp>-5</samp>
(The switch for invocation may change to something more descriptive in
the future).
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1297">alphabetization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1298">sort alphabetically</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1299"><code>-a</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1300"><code>--abc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1301"><code>--alphabetize</code></indexterm></cindex>
+<html endspaces=" ">
+<a name="abc"></a> <!&textndash; http://nco.sf.net/nco.html#abc &textndash;>
+<a name="alphabetize"></a> <!&textndash; http://nco.sf.net/nco.html#alphabetize &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1299">alphabetization</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1300">sort alphabetically</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1301"><code>-a</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1302"><code>--abc</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1303"><code>--alphabetize</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-a</itemformat></item>
</tableterm><tableitem><para>Do not alphabetize extracted fields.
By default, the specified output variables are extracted, printed, and
@@ -14088,25 +14124,42 @@ file.
Thus <code>-a</code> retains the original ordering of the variables.
Also <samp>--abc</samp> and <samp>--alphabetize</samp>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1302">binary format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1303"><code>-b</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1304"><code>--fl_bnr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1305"><code>--bnr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1306"><code>--binary</code></indexterm></cindex>
+<html endspaces=" ">
+<a name="bnr"></a> <!&textndash; http://nco.sf.net/nco.html#bnr &textndash;>
+<a name="binary"></a> <!&textndash; http://nco.sf.net/nco.html#binary &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1304">binary format</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1305"><code>-b</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1306"><code>--fl_bnr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1307"><code>--bnr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1308"><code>--binary</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-b <file>file</file></itemformat></item>
</tableterm><tableitem><para>Activate native machine binary output writing to binary file
<file>file</file>.
Also <samp>--fl_bnr</samp> and <samp>--binary-file</samp>.
Writing packed variables in binary format is not supported.
-</para>
+Metadata is never output to the binary file.
+Examine the netCDF output file to see the variables in the binary file.
+Use the <samp>-C</samp> switch, if necessary, to avoid wanting unwanted
+coordinates to the binary file:
+</para><example endspaces=" ">
+<pre xml:space="preserve">% ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
+200
+% ls -l ~/bnr.dat
+% ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
+% ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
+40
+</pre></example>
+
<html endspaces=" ">
<a name="dmn_fix_mk"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_fix_mk &textndash;>
<a name="fix_rec_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#fix_rec_dmn &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1307">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1308">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1309"><code>--fix_rec_dmn <var>dim</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1310"><code>--no_rec_dmn <var>dim</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1309">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1310">fixed dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1311"><code>--fix_rec_dmn <var>dim</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1312"><code>--no_rec_dmn <var>dim</var></code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--fix_rec_dmn</itemformat></item>
</tableterm><tableitem><para>Change record dimension <var>dim</var> in the input file into a fixed
dimension in the output file.
@@ -14138,18 +14191,18 @@ limited to at most one record dimension) (<pxref label="Group-Path-Editing"><xre
<a name="hdn"></a> <!&textndash; http://nco.sf.net/nco.html#hdn &textndash;>
<a name="hidden"></a> <!&textndash; http://nco.sf.net/nco.html#hidden &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1311">hidden attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1312">special attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1313"><code>--hdn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1314"><code>--hidden</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1315"><code>_Format</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1316"><code>_DeflateLevel</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1317"><code>_Shuffle</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1318"><code>_Storage</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1319"><code>_ChunkSizes</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1320"><code>_Endianness</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1321"><code>_Fletcher32</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1322"><code>_NOFILL</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1313">hidden attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1314">special attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1315"><code>--hdn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1316"><code>--hidden</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1317"><code>_Format</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1318"><code>_DeflateLevel</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1319"><code>_Shuffle</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1320"><code>_Storage</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1321"><code>_ChunkSizes</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1322"><code>_Endianness</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1323"><code>_Fletcher32</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1324"><code>_NOFILL</code></indexterm></cindex>
<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), the <samp>--hdn</samp>
or <samp>--hidden</samp> options print hidden (aka special) attributes.
This is equivalent to <samp>ncdump -s</samp>.
@@ -14170,15 +14223,15 @@ detailed descriptions of the meanings of these attributes.
<a name="hncgen"></a> <!&textndash; http://nco.sf.net/nco.html#hncgen &textndash;>
<a name="ncgen-hdf"></a> <!&textndash; http://nco.sf.net/nco.html#ncgen-hdf &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1323"><command>hdp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1324"><command>ncgen</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1325"><command>ncgen-hdf</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1326"><command>hncgen</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1327"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1328"><code>--cdl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1329"><acronym><acronymword>CDL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1330"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1331"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1325"><command>hdp</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1326"><command>ncgen</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1327"><command>ncgen-hdf</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1328"><command>hncgen</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1329"><command>ncdump</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1330"><code>--cdl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1331"><acronym><acronymword>CDL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1332"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1333"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--cdl </itemformat></item>
</tableterm><tableitem><para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.3 (July, 2013), <command>ncks</command> can
print extracted data and metadata to screen (i.e., <code>stdout</code>) as
@@ -14232,10 +14285,10 @@ name installed, is not robust and can fail on valid netCDF3
<a name="dmn_rec_mk"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_rec_mk &textndash;>
<a name="mk_rec_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#mk_rec_dmn &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1332">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1333">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1334">fix record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1335"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1334">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1335">fixed dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1336">fix record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1337"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--mk_rec_dmn <var>dim</var></itemformat></item>
</tableterm><tableitem><para>Change existing dimension <var>dim</var> to a record dimension in the output file.
This is the most straightforward way of changing a dimension to a/the
@@ -14245,11 +14298,12 @@ See <ref label="ncecat-netCDF-Ensemble-Concatenator"><xrefnodename>ncecat netCDF
changing variable dimensionality, including the record dimension.
</para>
<html endspaces=" ">
-<a name="prn"></a> <!&textndash; http://nco.sf.net/nco.html#prn &textndash;>
+<a name="H"></a> <!&textndash; http://nco.sf.net/nco.html#H &textndash;>
+<a name="data"></a> <!&textndash; http://nco.sf.net/nco.html#data &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1336"><code>-H</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1337"><code>--data</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1338"><code>--hieronymus</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1338"><code>-H</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1339"><code>--data</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1340"><code>--hieronymus</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-H </itemformat></item>
</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying data (not metadata).
Also activated using <samp>--print</samp> or <samp>--prn</samp>.
@@ -14305,10 +14359,14 @@ lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1339"><code>-M</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1340"><code>--Mtd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1341"><code>--Metadata</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1342">metadata, global</indexterm></cindex>
+<html endspaces=" ">
+<a name="Metadata"></a> <!&textndash; http://nco.sf.net/nco.html#Metadata &textndash;>
+<a name="M"></a> <!&textndash; http://nco.sf.net/nco.html#M &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1341"><code>-M</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1342"><code>--Mtd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1343"><code>--Metadata</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1344">metadata, global</indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-M</itemformat></item>
</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying global and group metadata.
This includes file summary information and global and group attributes.
@@ -14359,20 +14417,25 @@ ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
<para>where <code>VAs</code> and <code>GAs</code> denote variable and group/global
attributes, respectively.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1343"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1344"><code>-m</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1345"><code>--mtd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1346"><code>--metadata</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1347">metadata</indexterm></cindex>
+<html endspaces=" ">
+<a name="m"></a> <!&textndash; http://nco.sf.net/nco.html#m &textndash;>
+<a name="mtd"></a> <!&textndash; http://nco.sf.net/nco.html#mtd &textndash;>
+<a name="metadata"></a> <!&textndash; http://nco.sf.net/nco.html#metadata &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1345"><command>ncdump</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1346"><code>-m</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1347"><code>--mtd</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1348"><code>--metadata</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1349">metadata</indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-m</itemformat></item>
</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying variable metadata.
Using <samp>-m</samp> will print variable metadata to screen (similar to
<kbd>ncdump -h</kbd>).
This displays all metadata pertaining to each variable, one variable
at a time.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1348">chunking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1349">compression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1350">deflation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1350">chunking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1351">compression</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1352">deflation</indexterm></cindex>
This includes information on the storage properties of the variable,
such as whether it employs chunking, compression, or packing.
Also activated using <samp>--mtd</samp> and <samp>--metadata</samp>.
@@ -14383,11 +14446,16 @@ specified.
Also use <samp>-m</samp> to turn-off copying of variable metadata to an output
file.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1351"><code>--no_blank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1352"><code>--noblank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1353"><code>--no-blank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1354">blank</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1355">missing values</indexterm></cindex>
+<html endspaces=" ">
+<a name="no_blank"></a> <!&textndash; http://nco.sf.net/nco.html#no_blank &textndash;>
+<a name="noblank"></a> <!&textndash; http://nco.sf.net/nco.html#noblank &textndash;>
+<a name="no-blank"></a> <!&textndash; http://nco.sf.net/nco.html#no-blank &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1353"><code>--no_blank</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1354"><code>--noblank</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1355"><code>--no-blank</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1356">blank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1357">missing values</indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--no_blank</itemformat></item>
</tableterm><tableitem><para>Print numeric representation of missing values.
As of <acronym><acronymword>NCO</acronymword></acronym>
@@ -14397,9 +14465,13 @@ To enable the old behavior of printing the numeric representation of
missing values (e.g., <code>1.0e36</code>), use the <samp>--no_blank</samp> switch.
Also activated using <samp>--noblank</samp> or <samp>--no-blank</samp>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1356"><code>-P</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1357"><code>--print</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1358"><code>--prn</code></indexterm></cindex>
+<html endspaces=" ">
+<a name="P"></a> <!&textndash; http://nco.sf.net/nco.html#P &textndash;>
+<a name="prn"></a> <!&textndash; http://nco.sf.net/nco.html#prn &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1358"><code>-P</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1359"><code>--print</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1360"><code>--prn</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-P </itemformat></item>
</tableterm><tableitem><para>Print data, metadata, and units to screen.
The <samp>-P</samp> switch is a convenience abbreviation for
@@ -14407,7 +14479,10 @@ The <samp>-P</samp> switch is a convenience abbreviation for
Also activated using <samp>--print</samp> or <samp>--prn</samp>.
This set of switches is useful for exploring file contents.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1359"><code>-Q</code></indexterm></cindex>
+<html endspaces=" ">
+<a name="Q"></a> <!&textndash; http://nco.sf.net/nco.html#Q &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1361"><code>-Q</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-Q </itemformat></item>
</tableterm><tableitem><para>Toggle printing of dimension indices and coordinate values when printing
arrays.
@@ -14415,9 +14490,13 @@ Each variable&textrsquo;s name appears flush left in the output.
This helps locate specific variables in lists with many variables and
different dimensions.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1360"><code>-q</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1361"><code>--quiet</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1362">quiet</indexterm></cindex>
+<html endspaces=" ">
+<a name="q"></a> <!&textndash; http://nco.sf.net/nco.html#q &textndash;>
+<a name="quiet"></a> <!&textndash; http://nco.sf.net/nco.html#quiet &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1362"><code>-q</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1363"><code>--quiet</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1364">quiet</indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-q </itemformat></item>
</tableterm><tableitem><para>Turn off all printing to screen.
This overrides the setting of all print-related switches, equivalent to
@@ -14428,18 +14507,50 @@ This allows <command>ncks</command> to retrieve remote files without
automatically trying to print them.
Also <samp>--quiet</samp>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1363"><code>-s</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1364"><code>--string</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1365"><code>--sng_fmt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1366"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1367">C language</indexterm></cindex>
+<html endspaces=" ">
+<a name="rad"></a> <!&textndash; http://nco.sf.net/nco.html#rad &textndash;>
+<a name="orphan"></a> <!&textndash; http://nco.sf.net/nco.html#orphan &textndash;>
+<a name="rph_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#rph_dmn &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1365"><code>--rad</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1366">orphan dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1367"><code>--retain_all_dimensions</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1368"><code>--orphan_dimensions</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1369"><code>--rph_dmn</code></indexterm></cindex>
+</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--rad</itemformat></item>
+</tableterm><tableitem><para>Retain all dimensions.
+When invoked with <code>--rad</code> (Retain All Dimensions),
+<command>ncks</command> copies each dimension in the input file to the output
+file, regardless of whether the dimension is utilized by any variables.
+Normally <command>ncks</command> discards &textldquo;orphan dimensions&textrdquo;, i.e., dimensions
+not referenced by any variables.
+This switch allows users to keep non-referenced dimensions in the workflow.
+When invoked in printing mode, causes orphaned dimensions to be printed
+(they are not printed by default).
+Also <samp>--retain_all_dimensions</samp>, <samp>--orphan_dimensions</samp>, and
+<samp>--rph_dmn</samp>.
+</para>
+<html endspaces=" ">
+<a name="s"></a> <!&textndash; http://nco.sf.net/nco.html#s &textndash;>
+<a name="sng_fmt"></a> <!&textndash; http://nco.sf.net/nco.html#sng_fmt &textndash;>
+<a name="string"></a> <!&textndash; http://nco.sf.net/nco.html#string &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1370"><code>-s</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1371"><code>--string</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1372"><code>--sng_fmt</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1373"><code>printf()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1374">C language</indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-s <var>format</var></itemformat></item>
</tableterm><tableitem><para>String format for text output.
Accepts <w>C language</w> escape sequences and <code>printf()</code> formats.
Also <samp>--string</samp> and <samp>--sng_fmt</samp>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1368"><code>-u</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1369"><code>--units</code></indexterm></cindex>
+<html endspaces=" ">
+<a name="units"></a> <!&textndash; http://nco.sf.net/nco.html#units &textndash;>
+<a name="u"></a> <!&textndash; http://nco.sf.net/nco.html#u &textndash;>
+</html>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1375"><code>-u</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1376"><code>--units</code></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-u </itemformat></item>
</tableterm><tableitem><para>Toggle the printing of a variable&textrsquo;s <code>units</code> attribute, if any,
with its values.
@@ -14449,11 +14560,11 @@ Also <samp>--units</samp>.
<a name="xml"></a> <!&textndash; http://nco.sf.net/nco.html#xml &textndash;>
<a name="ncmnl"></a> <!&textndash; http://nco.sf.net/nco.html#ncml &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1370"><code>--xml</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1371"><code>--ncml</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1372"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1373"><acronym><acronymword>XML</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1374"><acronym><acronymword>NcML</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1377"><code>--xml</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1378"><code>--ncml</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1379"><command>ncdump</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1380"><acronym><acronymword>XML</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1381"><acronym><acronymword>NcML</acronymword></acronym></indexterm></cindex>
</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--xml, --ncml</itemformat></item>
</tableterm><tableitem><para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.3 (July, 2013), <command>ncks</command> can
print extracted metadata to screen (i.e., <code>stdout</code>) as
@@ -14492,10 +14603,10 @@ comparison to output from Unidata&textrsquo;s <command>toolsUI</command> Java pr
Please let us know how to improve <acronym><acronymword>XML</acronymword></acronym>/<acronym><acronymword>NcML</acronymword></acronym>
features.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1375"><code>--xml_no_location</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1376"><code>--xml_spr_chr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1377"><code>--xml_spr_nmr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1378">separator</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1382"><code>--xml_no_location</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1383"><code>--xml_spr_chr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1384"><code>--xml_spr_nmr</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1385">separator</indexterm></cindex>
<para><command>ncks</command> provides additional options to configure <acronym><acronymword>NcML</acronymword></acronym>
output: <samp>--xml_no_location</samp>, <samp>--xml_spr_chr</samp>, and
<samp>--xml_spr_nmr</samp>.
@@ -14571,25 +14682,25 @@ include an NcML formatting characters (e.g., commas, angles, quotes).
</unnumberedsubsec>
<node name="Filters-for-ncks" spaces=" "><nodename>Filters for <command>ncks</command></nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ncks netCDF Kitchen Sink</nodeprev><nodeup spaces=" ">ncks netCDF Kitchen Sink</nodeup></node>
<subsection spaces=" "><sectiontitle>Filters for <command>ncks</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1379"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1380"><command>ncattget</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1381"><command>ncavg</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1382"><command>ncdmnsz</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1383"><command>nclist</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1384"><command>ncmax</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1385"><command>ncmdn</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1386"><command>ncmin</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1387"><command>ncrecsz</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1388"><command>ncrng</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1389"><command>ncunits</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1390"><file>.bashrc</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1391">filters</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1392">alias</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1393">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1394">Bash shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1395">Csh shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1396">Sh shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1397"><command>bash</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1386"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1387"><command>ncattget</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1388"><command>ncavg</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1389"><command>ncdmnsz</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1390"><command>nclist</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1391"><command>ncmax</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1392"><command>ncmdn</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1393"><command>ncmin</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1394"><command>ncrecsz</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1395"><command>ncrng</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1396"><command>ncunits</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1397"><file>.bashrc</file></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1398">filters</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1399">alias</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1400">shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1401">Bash shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1402">Csh shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1403">Sh shell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1404"><command>bash</command></indexterm></cindex>
<para>We encourage the use of standard <acronym><acronymword>UNIX</acronymword></acronym> pipes and filters to
narrow the verbose output of <command>ncks</command> into more precise targets.
For example, to obtain an uncluttered listing of the variables in a file
@@ -14714,12 +14825,12 @@ conventions:
<para>Now the file <file>out.nc</file> contains all the data from <file>in.nc</file>.
There are, however, two differences between <file>in.nc</file> and
<file>out.nc</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1398"><code>history</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1405"><code>history</code></indexterm></cindex>
First, the <code>history</code> global attribute (<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>)
will contain the command used to create <file>out.nc</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1399">alphabetize output</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1400">sort alphabetically</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1401"><code>-a</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1406">alphabetize output</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1407">sort alphabetically</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1408"><code>-a</code></indexterm></cindex>
Second, the variables in <file>out.nc</file> will be defined in alphabetical
order.
Of course the internal storage of variable in a netCDF file should be
@@ -14729,16 +14840,16 @@ is useful (see description of <code>-a</code> switch).
<html endspaces=" ">
<a name="xmp_att_glb_cpy"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_att_glb_cpy &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1402">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1403">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1404">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1405">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1406">extraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1407"><code>-v <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1408"><code>--variable <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1409"><code>-x</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1410"><code>--exclude</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1411"><code>--xcl</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1409">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1410">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1411">subsetting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1412">exclusion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1413">extraction</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1414"><code>-v <var>var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1415"><code>--variable <var>var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1416"><code>-x</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1417"><code>--exclude</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1418"><code>--xcl</code></indexterm></cindex>
<para>Copy all global attributes (and no variables) from <file>in.nc</file> to
<file>out.nc</file>:
</para><example endspaces=" ">
@@ -14749,10 +14860,10 @@ list (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodena
Since no extraction list is explicitly specified (with <samp>-v</samp>),
the default is to extract all variables.
The complement of all variables is no variables.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1412"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1413"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1414"><code>--append</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1415">appending to files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1419"><code>-A</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1420"><code>--apn</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1421"><code>--append</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1422">appending to files</indexterm></cindex>
Without any variables to extract, the append (<samp>-A</samp>) command
(<pxref label="Appending-Variables"><xrefnodename>Appending Variables</xrefnodename></pxref>) has only to extract and copy
(i.e., append) global attributes to the output file.
@@ -14780,9 +14891,9 @@ ncks -A -C -H -v one,three_dmn_rec_var ~/in2.nc ~/out.nc
<para>Variables in <file>out.nc</file> now contain data (not metadata) from
<file>in.nc</file> and metadata (not data) from <file>in2.nc</file>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1416"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1417"><code>\n</code> (linefeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1418"><code>\t</code> (horizontal tab)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1423"><code>printf()</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1424"><code>\n</code> (linefeed)</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1425"><code>\t</code> (horizontal tab)</indexterm></cindex>
<para>Print variable <code>three_dmn_var</code> from file <file>in.nc</file> with
default notations.
Next print <code>three_dmn_var</code> as an un-annotated text column.
@@ -14841,13 +14952,13 @@ multidimensional arrays of characters representing fixed length strings
<pre xml:space="preserve">ncks -s '%c' -v fl_nm_arr in.nc
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1419"><code>core dump</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1426"><code>core dump</code></indexterm></cindex>
<para>Using the <code>%s</code> format code on strings which are not NUL-terminated
(and thus not technically strings) is likely to result in a core dump.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1420">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1421">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1422">extraction</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1427">subsetting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1428">exclusion</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1429">extraction</indexterm></cindex>
<para>Create netCDF <file>out.nc</file> containing all variables, and any associated
coordinates, except variable <code>time</code>, from netCDF <file>in.nc</file>:
</para><example endspaces=" ">
@@ -14904,7 +15015,7 @@ decimal point <xref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></
-d lev,1000.0 in.nc out.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1423">wrapped coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1430">wrapped coordinates</indexterm></cindex>
<para>Assume the domain of the monotonically increasing longitude coordinate
<code>lon</code> is <math>0 < <var>lon</var> < 360</math>.
Here, <code>lon</code> is an example of a wrapped coordinate.
@@ -14929,13 +15040,13 @@ the easternmost longitude as <var>max</var>, as follows:
<findex index="fn" spaces=" "><indexterm index="fn" number="35" mergedindex="cp">ncpdq</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="36" mergedindex="cp">ncpack</indexterm></findex>
<findex index="fn" spaces=" "><indexterm index="fn" number="37" mergedindex="cp">ncunpack</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1424">reshape variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1425">permute dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1426">reverse dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1427">re-order dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1428">re-dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1429">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1430">unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1431">reshape variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1432">permute dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1433">reverse dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1434">re-order dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1435">re-dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1436">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1437">unpacking</indexterm></cindex>
<noindent></noindent>
<para>SYNTAX
@@ -14960,10 +15071,10 @@ fashion with a minimum of time and memory.
The <dfn>pdq</dfn> may stand for &textldquo;Permute Dimensions Quickly&textrdquo;,
&textldquo;Pack Data Quietly&textrdquo;, &textldquo;Pillory Dan Quayle&textrdquo;, or other silly uses.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1431"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1432"><code>scale_factor</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1433"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1434">packing policy</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1438"><code>add_offset</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1439"><code>scale_factor</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1440"><command>ncap2</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1441">packing policy</indexterm></cindex>
<unnumberedsubsec spaces=" "><sectiontitle>Packing and Unpacking Functions</sectiontitle>
<para>The <command>ncpdq</command> packing (and unpacking) algorithms are described
in <ref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></ref>, and are also implemented in
@@ -14971,10 +15082,10 @@ in <ref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefn
<command>ncpdq</command> extends the functionality of these algorithms by
providing high level control of the <dfn>packing policy</dfn> so that
users can consistently pack (and unpack) entire files with one command.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1435"><var>pck_plc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1436"><code>-P <var>pck_plc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1437"><code>--pck_plc <var>pck_plc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1438"><code>--pack_policy <var>pck_plc</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1442"><var>pck_plc</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1443"><code>-P <var>pck_plc</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1444"><code>--pck_plc <var>pck_plc</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1445"><code>--pack_policy <var>pck_plc</var></code></indexterm></cindex>
The user specifies the desired packing policy with the <samp>-P</samp> switch
(or its long option equivalents, <samp>--pck_plc</samp> and
<samp>--pack_policy</samp>) and its <var>pck_plc</var> argument.
@@ -15039,9 +15150,9 @@ unlike <command>ncpdq</command>.
Similarly, <command>ncunpack</command> is a synonym for <command>ncpdq</command>
except that <command>ncpack</command> implicitly assumes a request to unpack,
i.e., <samp>-P pck_upk</samp>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1439"><code>-U</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1440"><code>--upk</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1441"><code>--unpack</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1446"><code>-U</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1447"><code>--upk</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1448"><code>--unpack</code></indexterm></cindex>
Finally, the <command>ncpdq</command> <samp>-U</samp> switch (or its long option
equivalents, <samp>--upk</samp> and <samp>--unpack</samp>) requires no argument.
It simply requests unpacking.
@@ -15056,20 +15167,20 @@ The following commands are equivalent for unpacking:
and <code>ncunpack</code>.
Equivalent commands for other packing policies, e.g., <samp>all_xst</samp>,
follow by analogy.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1442"><command>alias</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1443"><command>ln -s</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1444">symbolic links</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1449"><command>alias</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1450"><command>ln -s</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1451">symbolic links</indexterm></cindex>
Note that <command>ncpdq</command> synonyms are subject to the same constraints
and recommendations discussed in the secion on <command>ncbo</command> synonyms
(<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>).
That is, symbolic links must exist from the synonym to <command>ncpdq</command>,
or else the user must define an <command>alias</command>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1445">packing map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1446"><var>pck_map</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1447"><code>-M <var>pck_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1448"><code>--pck_map <var>pck_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1449"><code>--map <var>pck_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1452">packing map</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1453"><var>pck_map</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1454"><code>-M <var>pck_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1455"><code>--pck_map <var>pck_map</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1456"><code>--map <var>pck_map</var></code></indexterm></cindex>
<para>The <command>ncpdq</command> packing algorithms must know to which type
particular types of input variables are to be packed.
The correspondence between the input variable type and the output,
@@ -15078,22 +15189,22 @@ The user specifies the desired packing map with the <samp>-M</samp> switch
(or its long option equivalents, <samp>--pck_map</samp> and
<samp>--map</samp>) and its <var>pck_map</var> argument.
Five packing maps are currently implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1450"><samp>hgh_sht</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1451"><samp>hgh_byt</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1452"><samp>flt_sht</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1453"><samp>flt_byt</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1454"><samp>nxt_lsr</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1455"><code>NC_DOUBLE</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1456"><code>NC_FLOAT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1457"><code>NC_INT64</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1458"><code>NC_UINT64</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1459"><code>NC_INT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1460"><code>NC_UINT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1461"><code>NC_SHORT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1462"><code>NC_USHORT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1463"><code>NC_CHAR</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1464"><code>NC_BYTE</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1465"><code>NC_UBYTE</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1457"><samp>hgh_sht</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1458"><samp>hgh_byt</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1459"><samp>flt_sht</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1460"><samp>flt_byt</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1461"><samp>nxt_lsr</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1462"><code>NC_DOUBLE</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1463"><code>NC_FLOAT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1464"><code>NC_INT64</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1465"><code>NC_UINT64</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1466"><code>NC_INT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1467"><code>NC_UINT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1468"><code>NC_SHORT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1469"><code>NC_USHORT</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1470"><code>NC_CHAR</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1471"><code>NC_BYTE</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1472"><code>NC_UBYTE</code></indexterm></cindex>
</para><table commandarg="dfn" spaces=" " endspaces=" ">
<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack Floating Precisions to <code>NC_SHORT</code> [<emph>default</emph>]</itemformat></item>
</tableterm><tableitem><para>Definition: Pack floating precision types to <code>NC_SHORT</code>&linebreak;
@@ -15132,9 +15243,9 @@ file size by <w>about 50%.</w>
<samp>flt_byt</samp> packing reduces an <code>NC_DOUBLE</code>-dominated file by
<w>about 87%.</w>
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1466"><var>_FillValue</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1467"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1468"><code>NUL</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1473"><var>_FillValue</var></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1474"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1475"><code>NUL</code></indexterm></cindex>
<para>The netCDF packing algorithm (<pxref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></pxref>) is
lossy&textmdash;once packed, the exact original data cannot be recovered without
a full backup.
@@ -15172,16 +15283,16 @@ dimension list, e.g., <samp>-a -lat</samp>.
Re-ordering and reversal may be performed simultaneously, e.g.,
<samp>-a lon,-lat,time,-lev</samp>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1469">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1476">record dimension</indexterm></cindex>
<para>Users may specify any permutation of dimensions, including
permutations which change the record dimension identity.
The record dimension is re-ordered like any other dimension.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1470">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1471">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1477">concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1478">record dimension</indexterm></cindex>
This unique <command>ncpdq</command> capability makes it possible to concatenate
files along any dimension.
See <ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref> for a detailed example.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1472">record variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1479">record variable</indexterm></cindex>
The record dimension is always the most slowly varying dimension in a
record variable (<pxref label="C-and-Fortran-Index-Conventions"><xrefnodename>C and Fortran Index Conventions</xrefnodename></pxref>).
The specified re-ordering fails if it requires creating more than
@@ -15196,7 +15307,7 @@ variable.
To do this, include all the variable&textrsquo;s dimensions in the dimension
re-order list in their original order, and prefix each dimension name
with the negative sign.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1473">transpose</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1480">transpose</indexterm></cindex>
Second, it may useful to transpose a variable&textrsquo;s storage order, e.g.,
<w>from C</w> to Fortran data storage order
(<pxref label="C-and-Fortran-Index-Conventions"><xrefnodename>C and Fortran Index Conventions</xrefnodename></pxref>).
@@ -15317,9 +15428,9 @@ and the packing policy <var>pck_plc</var> as <samp>all_xst</samp>:
</para><example endspaces=" ">
<pre xml:space="preserve">ncpdq -P all_xst -M hgh_byt in.nc out.nc
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1474">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1475"><samp>-A</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1476"><samp>-v</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1481">appending variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1482"><samp>-A</samp></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1483"><samp>-v</samp></indexterm></cindex>
<para>Many different packing maps may be used to construct a given file
by performing the packing on subsets of variables (e.g., with <samp>-v</samp>)
and using the append feature with <samp>-A</samp> (<pxref label="Appending-Variables"><xrefnodename>Appending Variables</xrefnodename></pxref>).
@@ -15327,8 +15438,8 @@ and using the append feature with <samp>-A</samp> (<pxref label="Appending-Varia
<para>Users may wish to unpack data packed with the <acronym><acronymword>HDF</acronymword></acronym> convention,
and then re-pack it with the netCDF convention so that all their
datasets use the same packing convention prior to intercomparison.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1477"><command>ncl_convert2nc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1478"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1484"><command>ncl_convert2nc</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1485"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve"># One-step procedure: For NCO 4.4.0+, netCDF 4.3.1+
# 1. Convert, unpack, and repack HDF file into netCDF file
@@ -15386,7 +15497,7 @@ ncpdq -v three_dmn_var -a lon,lat in.nc out.nc
The second command extracts and re-orders only the variable
<code>three_dmn_var</code>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1479">reverse dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1486">reverse dimensions</indexterm></cindex>
<para>Suppose the dimension <code>lat</code> represents latitude and monotonically
increases increases from south to north.
Reversing the <code>lat</code> dimension means re-ordering the data so that
@@ -15404,8 +15515,8 @@ lat[1]=-90
<para>This operation reversed the latitude dimension of all variables.
Whitespace immediately preceding the negative sign that specifies
dimension reversal may be dangerous.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1480">long options</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1481">quotes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1487">long options</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1488">quotes</indexterm></cindex>
Quotes and long options can help protect negative signs that should
indicate dimension reversal from being interpreted by the shell as
dashes that indicate new command line switches.
@@ -15416,7 +15527,7 @@ ncpdq -a lon,-lat in.nc out.nc # OK. No whitespace before "-"
ncpdq --rdr=-lat in.nc out.nc # Preferred. Uses "=" not whitespace
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1482">reverse dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1489">reverse dimensions</indexterm></cindex>
<para>To create the mathematical transpose of a variable, place all its
dimensions in the dimension re-order list in reversed order.
This example creates the transpose of <code>three_dmn_var</code>:
@@ -15440,7 +15551,7 @@ lon[3]=270 lev[2]=1000 lat[0]=-90 three_dmn_var[22]=11
lon[3]=270 lev[2]=1000 lat[1]=90 three_dmn_var[23]=23
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1483">reverse data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1490">reverse data</indexterm></cindex>
<para>To completely reverse the storage order of a variable, include
all its dimensions in the re-order list, each prefixed by a negative
sign.
@@ -15475,7 +15586,7 @@ has no existing record dimension is simple with <command>ncecat</command>:
<pre xml:space="preserve">ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"
</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1484">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1491">record dimension</indexterm></cindex>
<para>Now consider a file with all dimensions, including <code>time</code>, fixed
(non-record).
Suppose the user wishes to convert <code>time</code> from a fixed dimension to
@@ -15494,7 +15605,7 @@ a record dimension required three separate commands,
The recommended method is now to use <samp>ncks --fix_rec_dmn</samp>, yet it
is still instructive to present the original procedure, as it shows how
multiple operators can achieve the same ends by different means:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1485">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1492">degenerate dimension</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncecat -O in.nc out.nc # Add degenerate record dimension named "record"
ncpdq -O -a time,record out.nc out.nc # Switch "record" and "time"
@@ -15524,10 +15635,10 @@ changing variable dimensionality, including the record dimension.
</section>
<node name="ncra-netCDF-Record-Averager" spaces=" "><nodename>ncra netCDF Record Averager</nodename><nodenext spaces=" ">ncrcat netCDF Record Concatenator</nodenext><nodeprev spaces=" ">ncpdq netCDF Permute Dimensions Quickly</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncra</command> netCDF Record Averager</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1486">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1487">record average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1488">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1489">running average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1493">averaging data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1494">record average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1495">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1496">running average</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="38" mergedindex="cp">ncra</indexterm></findex>
<noindent></noindent>
@@ -15548,15 +15659,15 @@ changing variable dimensionality, including the record dimension.
</para>
<para><command>ncra</command> averages record variables across an arbitrary number of
<var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1490">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1491">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1497">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1498">record dimension</indexterm></cindex>
The record dimension is, by default, retained as a degenerate
<w>(size 1)</w> dimension in the output variables.
<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1492">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1493">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1494"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1499">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1500">standard input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1501"><code>stdin</code></indexterm></cindex>
As a multi-file operator, <command>ncra</command> will read the list of
<var>input-files</var> from <code>stdin</code> if they are not specified
as positional arguments on the command line
@@ -15565,10 +15676,10 @@ as positional arguments on the command line
<para>Input files may vary in size, but each must have a record dimension.
The record coordinate, if any, should be monotonic (or else non-fatal
warnings may be generated).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1495">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1502">hyperslab</indexterm></cindex>
Hyperslabs of the record dimension which include more than one file
work correctly.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1496">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1503">stride</indexterm></cindex>
<command>ncra</command> supports the <var>stride</var> argument to the <samp>-d</samp>
hyperslab option (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) for the record dimension only,
<var>stride</var> is not supported for non-record dimensions.
@@ -15578,7 +15689,7 @@ hyperslab option (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodena
<command>ncra</command> does not attempt to see if, say, the <code>time</code>
coordinate is irregularly spaced and thus would require a weighted
average in order to be a true time average.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1497">operation types</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1504">operation types</indexterm></cindex>
<command>ncra</command> <emph>always averages</emph> coordinate variables regardless of
the arithmetic operation type performed on the non-coordinate variables.
(<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
@@ -15591,10 +15702,10 @@ the arithmetic operation type performed on the non-coordinate variables.
</para>
<para>Average files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
along the record dimension, and store the results in <file>8589.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1498">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1499"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1500">Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1501"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1505">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1506"><code>NINTAP</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1507">Processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1508"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
ncra 8[56789].nc 8589.nc
@@ -15604,7 +15715,7 @@ ncra -n 5,2,1 85.nc 8589.nc
<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
between these methods.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1502">Fortran</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1509">Fortran</indexterm></cindex>
<para>Assume the files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
each contain a record coordinate <var>time</var> of length 12 defined such
that the third record in <file>86.nc</file> contains data from March 1986,
@@ -15618,7 +15729,7 @@ ncra -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
<noindent></noindent>
<para>The file <file>87.nc</file> is superfluous, but does not cause an error.
The <samp>-F</samp> turns on the Fortran (1-based) indexing convention.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1503">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1510">stride</indexterm></cindex>
The following uses the <var>stride</var> option to average all the March
temperature data from multiple input files into a single output file
</para><example endspaces=" ">
@@ -15641,8 +15752,8 @@ averages June, 1985&textndash;June, 1989:
</section>
<node name="ncrcat-netCDF-Record-Concatenator" spaces=" "><nodename>ncrcat netCDF Record Concatenator</nodename><nodenext spaces=" ">ncrename netCDF Renamer</nodenext><nodeprev spaces=" ">ncra netCDF Record Averager</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncrcat</command> netCDF Record Concatenator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1504">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1505">record concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1511">concatenation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1512">record concatenation</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="39" mergedindex="cp">ncrcat</indexterm></findex>
<noindent></noindent>
@@ -15663,14 +15774,14 @@ averages June, 1985&textndash;June, 1989:
</para>
<para><command>ncrcat</command> concatenates record variables across an arbitrary
number of <var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1506">record dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1513">record dimension</indexterm></cindex>
The final record dimension is by default the sum of the lengths of the
record dimensions in the input files.
<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1507">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1508">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1509"><code>stdin</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1514">multi-file operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1515">standard input</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1516"><code>stdin</code></indexterm></cindex>
As a multi-file operator, <command>ncrcat</command> will read the list of
<var>input-files</var> from <code>stdin</code> if they are not specified
as positional arguments on the command line
@@ -15679,19 +15790,19 @@ as positional arguments on the command line
<para>Input files may vary in size, but each must have a record dimension.
The record coordinate, if any, should be monotonic (or else non-fatal
warnings may be generated).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1510">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1517">hyperslab</indexterm></cindex>
Hyperslabs along the record dimension that span more than one file are
handled correctly.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1511">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1518">stride</indexterm></cindex>
<command>ncra</command> supports the <var>stride</var> argument to the <samp>-d</samp>
hyperslab option for the record dimension only, <var>stride</var> is not
supported for non-record dimensions.
</para>
<findex index="fn" spaces=" "><indexterm index="fn" number="40" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1512">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1513">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1514"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1515"><code>scale_factor</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1519">packing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1520">unpacking</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1521"><code>add_offset</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1522"><code>scale_factor</code></indexterm></cindex>
<para>Concatenating a variable packed with different scales multiple datasets
is beyond the capabilities of <command>ncrcat</command> (and <command>ncecat</command>,
the other concatenator (<ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref>).
@@ -15708,7 +15819,7 @@ First, unpack the data using <command>ncpdq</command>.
Second, concatenate the unpacked data using <command>ncrcat</command>,
Third, re-pack the result with <command>ncpdq</command>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1516">ARM conventions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1523">ARM conventions</indexterm></cindex>
<para><command>ncrcat</command> applies special rules to <acronym><acronymword>ARM</acronymword></acronym> convention time
fields (e.g., <code>time_offset</code>).
See <ref label="ARM-Conventions"><xrefnodename>ARM Conventions</xrefnodename></ref> for a complete description.
@@ -15721,10 +15832,10 @@ See <ref label="ARM-Conventions"><xrefnodename>ARM Conventions</xrefnodename></r
</para>
<para>Concatenate files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
along the record dimension, and store the results in <file>8589.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1517">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1518"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1519">Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1520"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1524">globbing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1525"><code>NINTAP</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1526">Processor</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1527"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncrcat 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
ncrcat 8[56789].nc 8589.nc
@@ -15735,7 +15846,7 @@ ncrcat -n 5,2,1 85.nc 8589.nc
<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
between these methods.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1521">Fortran</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1528">Fortran</indexterm></cindex>
<para>Assume the files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
each contain a record coordinate <var>time</var> of <w>length 12</w> defined
such that the third record in <file>86.nc</file> contains data from March
@@ -15752,7 +15863,7 @@ When <command>ncra</command> and <command>ncrcat</command> encounter a file whic
contain any records that meet the specified hyperslab criteria, they
disregard the file and proceed to the next file without failing.
The <samp>-F</samp> turns on the Fortran (1-based) indexing convention.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1522">stride</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1529">stride</indexterm></cindex>
</para>
<para>The following uses the <var>stride</var> option to concatenate all the March
temperature data from multiple input files into a single output file
@@ -15776,14 +15887,14 @@ concatenates June, 1985&textndash;June, 1989:
</section>
<node name="ncrename-netCDF-Renamer" spaces=" "><nodename>ncrename netCDF Renamer</nodename><nodenext spaces=" ">ncwa netCDF Weighted Averager</nodenext><nodeprev spaces=" ">ncrcat netCDF Record Concatenator</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncrename</command> netCDF Renamer</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1523">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1524">renaming groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1525">renaming dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1526">renaming attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1527">variable names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1528">dimension names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1529">attribute names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1530">group names</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1530">renaming variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1531">renaming groups</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1532">renaming dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1533">renaming attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1534">variable names</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1535">dimension names</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1536">attribute names</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1537">group names</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="41" mergedindex="cp">ncrename</indexterm></findex>
<noindent></noindent>
@@ -15799,7 +15910,7 @@ concatenates June, 1985&textndash;June, 1989:
<noindent></noindent>
<para>DESCRIPTION
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1531"><kbd>.</kbd></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1538"><kbd>.</kbd></indexterm></cindex>
<para><command>ncrename</command> renames netCDF dimensions, variables, attributes, and
groups.
Each object that has a name in the list of old names is renamed using
@@ -15828,9 +15939,9 @@ The object name is the terminal path component of <var>new_name</var> and
this object must already exist in the group specified by the
<var>old_name</var> path.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1532">data safety</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1533">safeguards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1534">temporary output files</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1539">data safety</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1540">safeguards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1541">temporary output files</indexterm></cindex>
<para><command>ncrename</command> is an exception to the normal <acronym><acronymword>NCO</acronymword></acronym> rule that
the user will be interactively prompted before an existing file is
changed, and that a temporary copy of an output file is constructed
@@ -15850,10 +15961,10 @@ In this case, the named dependent variable must be one-dimensional and
should have no missing values.
Such a variable will become a coordinate variable.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1535">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1536">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1537">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1538">execution time</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1542">performance</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1543">operator speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1544">speed</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1545">execution time</indexterm></cindex>
<para>According to the <cite>netCDF User Guide</cite>, renaming properties in
netCDF files does not incur the penalty of recopying the entire file
when the <var>new_name</var> is shorter than the <var>old_name</var>.
@@ -15867,9 +15978,9 @@ when the <var>new_name</var> is shorter than the <var>old_name</var>.
The old and new names of the attribute are specified with <samp>-a</samp>
(or <samp>--attribute</samp>) by the associated <var>old_name</var> and
<var>new_name</var> values.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1539"><code>global</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1540">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1541">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1546"><code>global</code> attribute</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1547">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1548">attributes, global</indexterm></cindex>
Global attributes are treated no differently than variable attributes.
This option may be specified more than once.
As mentioned above, all occurrences of the attribute of a given name
@@ -15949,7 +16060,7 @@ ncrename -v /g1/lon,/g1/longitude in_grp.nc # Alternate
<html endspaces=" ">
<a name="ncrename_crd"></a> <!&textndash; http://nco.sf.net/nco.html#ncrename_crd &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1542">coordinate variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1549">coordinate variables</indexterm></cindex>
<para><command>ncrename</command> does not automatically attach dimensions to variables of
the same name.
This is done to make renaming an easy way to change whether a variable
@@ -15984,10 +16095,10 @@ ncrename -O -d lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames variable
version 4.3.1-rc5 or later, or convert the file to netCDF3 first,
then rename as intended, then convert back.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1543">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1544">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1545"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1546"><code>missing_value</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1550">global attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1551">attributes, global</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1552"><code>_FillValue</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1553"><code>missing_value</code></indexterm></cindex>
<para>Create netCDF <file>out.nc</file> identical to <file>in.nc</file> except the
attribute <code>_FillValue</code> is changed to <code>missing_value</code>,
the attribute <code>units</code> is changed to <code>CGS_units</code> (but only in
@@ -16040,10 +16151,10 @@ Variables not prefixed with a period (<code>global</code>) must be present.
</section>
<node name="ncwa-netCDF-Weighted-Averager" spaces=" "><nodename>ncwa netCDF Weighted Averager</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ncrename netCDF Renamer</nodeprev><nodeup spaces=" ">Operator Reference Manual</nodeup></node>
<section spaces=" "><sectiontitle><command>ncwa</command> netCDF Weighted Averager</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1547">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1548">weighted average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1549">masked average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1550">broadcasting variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1554">averaging data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1555">weighted average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1556">masked average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1557">broadcasting variables</indexterm></cindex>
<findex index="fn" spaces=" "><indexterm index="fn" number="42" mergedindex="cp">ncwa</indexterm></findex>
<noindent></noindent>
@@ -16071,7 +16182,7 @@ The default behavior of <command>ncwa</command> is to arithmetically average
every numerical variable over all dimensions and to produce a scalar
result for each.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1551">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1558">degenerate dimension</indexterm></cindex>
<para>Averaged dimensions are, by default, eliminated as dimensions.
Their corresponding coordinates, if any, are output as scalar
variables.
@@ -16085,9 +16196,9 @@ concatenation along the degenerate dimension.
<para>To average variables over only a subset of their dimensions, specify
these dimensions in a comma-separated list following <samp>-a</samp>, e.g.,
<samp>-a time,lat,lon</samp>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1552">arithmetic operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1553">hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1554"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>]]</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1559">arithmetic operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1560">hyperslab</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1561"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>]]</code></indexterm></cindex>
As with all arithmetic operators, the operation may be restricted to
an arbitrary hypserslab by employing the <samp>-d</samp> option
(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
@@ -16102,20 +16213,20 @@ With these options, <command>ncwa</command> can compute sophisticated averages
<a name="-w"></a> <!&textndash; http://nco.sf.net/nco.html#-w &textndash;>
<a name="wgt"></a> <!&textndash; http://nco.sf.net/nco.html#wgt &textndash;>
</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1555"><code>-w <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1556"><code>--weight <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1557"><code>--wgt_var <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1558"><code>-m <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1559"><code>--mask-variable <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1560"><code>--mask_variable <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1561"><code>--msk_nm <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1562"><code>--msk_var <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1563"><code>-B <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1564"><code>--msk_cnd <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1565"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1562"><code>-w <var>weight</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1563"><code>--weight <var>weight</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1564"><code>--wgt_var <var>weight</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1565"><code>-m <var>mask_var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1566"><code>--mask-variable <var>mask_var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1567"><code>--mask_variable <var>mask_var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1568"><code>--msk_nm <var>mask_var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1569"><code>--msk_var <var>mask_var</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1570"><code>-B <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1571"><code>--msk_cnd <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1572"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
<para><var>mask_var</var> and <var>weight</var>, if specified, are broadcast to conform
to the variables being averaged.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1566">rank</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1573">rank</indexterm></cindex>
The rank of variables is reduced by the number of dimensions which they
are averaged over.
Thus arrays which are one dimensional in the <var>input-file</var> and are
@@ -16150,8 +16261,8 @@ Since, by default <command>ncwa</command> weights coordinate variables, the
value of <code>latitude</code> in the <var>output-file</var> depends on the weights
in <var>lat_wgt</var> and is not likely to <w>be 45.0</w>, the midpoint latitude
of the hyperslab.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1567">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1568"><code>-I</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1574">coordinate variable</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1575"><code>-I</code></indexterm></cindex>
Option <samp>-I</samp> overrides this default behavior and causes
<command>ncwa</command> not to weight or mask coordinate variables
<footnote><para>The default behavior of (<samp>-I</samp>) changed on
@@ -16169,8 +16280,8 @@ area-weighted mean latitude.
centroid of the hyperslab.
For the example given, this is about <w>30 degrees.</w></para></footnote>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1569">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1570">operation types</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1576">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1577">operation types</indexterm></cindex>
<para>As explained in <xref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></xref>, <command>ncwa</command>
<emph>always averages</emph> coordinate variables regardless of the arithmetic
operation type performed on the non-coordinate variables.
@@ -16190,8 +16301,8 @@ is given above (<pxref label="Operation-Types"><xrefnodename>Operation Types</xr
</html>
<node name="Mask-condition" spaces=" "><nodename>Mask condition</nodename><nodenext spaces=" ">Normalization and Integration</nodenext><nodeprev spaces=" ">ncwa netCDF Weighted Averager</nodeprev><nodeup spaces=" ">ncwa netCDF Weighted Averager</nodeup></node>
<subsection spaces=" "><sectiontitle>Mask condition</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1571">mask condition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1572">truth condition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1578">mask condition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1579">truth condition</indexterm></cindex>
<tex endspaces=" ">
Each $\xxx_{\idx}$ also has an associated masking
weight~$\mskflg_{\idx}$ whose value is~0 or~1 (false or true).
@@ -16206,12 +16317,12 @@ As expected, $\mskflg_{\idx} = 1$ when the mask condition is
<dfn>true</dfn> and $\mskflg_{\idx} = 0$ otherwise.
</tex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1573"><code>--op_rlt <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1574"><code>--mask_comparator <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1575"><code>--msk_cmp_typ <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1576"><code>--msk_cnd_sng <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1577"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1578"><code>-B <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1580"><code>--op_rlt <var>mask_comp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1581"><code>--mask_comparator <var>mask_comp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1582"><code>--msk_cmp_typ <var>mask_comp</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1583"><code>--msk_cnd_sng <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1584"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1585"><code>-B <var>mask_cond</var></code></indexterm></cindex>
<para>The mask condition has the syntax <math><var>mask_var</var></math>
<math><var>mask_comp</var></math> <math><var>mask_val</var></math>.
The preferred method to specify the mask condition is in one string with
@@ -16226,7 +16337,7 @@ It is safest to write scripts using <samp>--mask_condition</samp>.</para></footn
The <var>mask_condition</var> string is automatically parsed into its three
constituents <var>mask_var</var>, <var>mask_comp</var>, and <var>mask_val</var>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1579">comparator</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1586">comparator</indexterm></cindex>
<para>Here <var>mask_var</var> is the name of the masking variable (specified with
<samp>-m</samp>, <samp>--mask-variable</samp>, <samp>--mask_variable</samp>,
<samp>--msk_nm</samp>, or <samp>--msk_var</samp>).
@@ -16245,9 +16356,9 @@ comparisons <math>==</math>, <math>!=</math>, <math>></math>, <math><</mat
<math><=</math>.
<clear name="flg" line=" flg"></clear>
The mask comparator defaults to <kbd>eq</kbd> (equality).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1580"><code>--mask-value <var>mask_val</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1581"><code>--mask_value <var>mask_val</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1582"><code>--msk_val <var>mask_val</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1587"><code>--mask-value <var>mask_val</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1588"><code>--mask_value <var>mask_val</var></code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1589"><code>--msk_val <var>mask_val</var></code></indexterm></cindex>
The <var>mask_val</var> argument to <samp>-M</samp> (or <samp>--mask-value</samp>, or
<samp>--msk_val</samp>) is the right hand side of the
<dfn>mask condition</dfn>.
@@ -16300,11 +16411,11 @@ weight $\wgt_{\idx}=0.0$ as well).
</subsection>
<node name="Normalization-and-Integration" spaces=" "><nodename>Normalization and Integration</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Mask condition</nodeprev><nodeup spaces=" ">ncwa netCDF Weighted Averager</nodeup></node>
<subsection spaces=" "><sectiontitle>Normalization and Integration</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1583">normalization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1584"><code>-N</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1585"><code>numerator</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1586">integration</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1587">dot product</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1590">normalization</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1591"><code>-N</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1592"><code>numerator</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1593">integration</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1594">dot product</indexterm></cindex>
<para><command>ncwa</command> has one switch which controls the normalization of the
averages appearing in the <var>output-file</var>.
Short option <samp>-N</samp> (or long options <samp>--nmr</samp> or
@@ -16329,7 +16440,7 @@ integrals (i.e., weighted sums) to be output.
For example, consider the variable
<code>lev</code> where <math><var>lev</var> = [100,500,1000]</math> weighted by
the weight <code>lev_wgt</code> where <math><var>lev_wgt</var> = [10,2,1]</math>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1588">dot product</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1595">dot product</indexterm></cindex>
The vertical integral of <code>lev</code>, weighted by <code>lev_wgt</code>,
is the dot product of <var>lev</var> and <var>lev_wgt</var>.
That this is <w>is 3000.0</w> can be seen by inspection and verified with
@@ -16408,7 +16519,7 @@ specified (with <samp>-a</samp>).
ncwa -a lon -b in.nc out2.nc
</pre></example>
<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1589">degenerate dimension</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1596">degenerate dimension</indexterm></cindex>
<para>The first command turns <code>lon</code> into a scalar and the second retains
<code>lon</code> as a degenerate dimension in all variables.
</para><example endspaces=" ">
@@ -16420,9 +16531,9 @@ lon[0] = 135
<para>In either case the tally is simply the size of <code>lon</code>, i.e., 180
for the <file>85_0112.nc</file> file described by the sample header above.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1590"><code>gw</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1591">Gaussian weights</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1592">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1597"><code>gw</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1598">Gaussian weights</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1599">climate model</indexterm></cindex>
<para>Compute the meridional (latitudinal) mean, with values weighted by
the corresponding element of <var>gw</var>
<footnote><para><code>gw</code> stands for <dfn>Gaussian weight</dfn> in many
@@ -16448,8 +16559,8 @@ $64 \times 128 = 8192$.
64 times 128 = 8192.
<clear name="flg" line=" flg"></clear>
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1593"><code>ORO</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1594">climate model</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1600"><code>ORO</code></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1601">climate model</indexterm></cindex>
<para>Compute the area-mean over the globe using only points for which
<set name="flg" line=" flg"></set>
<tex endspaces=" ">
@@ -16504,8 +16615,8 @@ the variable <var>area</var> contains the area of each gridcell
Thus the <samp>-N</samp> switch, or, equivalently, the <samp>-y ttl</samp> switch,
correctly integrate the cell areas into a total regional area.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1595">mask condition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1596">truth condition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1602">mask condition</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1603">truth condition</indexterm></cindex>
<para>Mask a file to contain <var>_FillValue</var> everywhere except where
<math><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var></math>:
</para><example endspaces=" ">
@@ -16533,17 +16644,17 @@ where <math><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var>
</chapter>
<node name="Contributing" spaces=" "><nodename>Contributing</nodename><nodenext spaces=" ">Quick Start</nodenext><nodeprev spaces=" ">Operator Reference Manual</nodeprev><nodeup spaces=" ">Top</nodeup></node>
<chapter spaces=" "><sectiontitle>Contributing</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1597">contributing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1604">contributing</indexterm></cindex>
<para>We welcome contributions from anyone.
The project homepage at <uref><urefurl>https://sf.net/projects/nco</urefurl></uref>
contains more information on how to contribute.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1598">PayPal</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1605">PayPal</indexterm></cindex>
<para>Financial contributions to <acronym><acronymword>NCO</acronymword></acronym> development may be made through
<uref><urefurl>https://www.paypal.com/xclick/business=zender%40uci.edu&item_name=NCO+development&item_number=nco_dnt_dvl&no_note=1&tax=0¤cy_code=USD</urefurl><urefdesc spaces=" ">PayPal</urefdesc></uref>.
<acronym><acronymword>NCO</acronymword></acronym> has been shared for over <w>10 years</w> yet only two
users have contributed any money to the developers
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="1599">chocolate</indexterm></cindex>
+<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="1606">chocolate</indexterm></cindex>
<para>Happy users have sent me a few gifts, though.
This includes a box of imported chocolate.
Mmm.
@@ -16569,13 +16680,13 @@ So you could be the third!
<para><acronym><acronymword>NCO</acronymword></acronym> would not exist without the dedicated efforts of the
remarkable software engineers who conceive, develop, and
maintain netCDF, UDUnits, and OPeNDAP.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1600">Russ Rew</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1601">John Caron</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1602">Glenn Davis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1603">Steve Emmerson</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1604">James Gallagher</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1605">Ed Hartnett</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1606">Dennis Heimbigner</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1607">Russ Rew</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1608">John Caron</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1609">Glenn Davis</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1610">Steve Emmerson</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1611">James Gallagher</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1612">Ed Hartnett</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1613">Dennis Heimbigner</indexterm></cindex>
Since 1995 <acronym><acronymword>NCO</acronymword></acronym> has received support from, I believe, the
entire staff of all these projects, including
Russ Rew,
@@ -16590,10 +16701,10 @@ In addition to their roles in maintaining the software stack on which
or contributed to <acronym><acronymword>NCO</acronymword></acronym> specifically. That support is
acknowledged separately below.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1607">contributors</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1614">contributors</indexterm></cindex>
<para>The primary contributors to <acronym><acronymword>NCO</acronymword></acronym> development have been:
</para><table commandarg="asis" spaces=" " endspaces=" ">
-<beforefirstitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1608">Charlie Zender</indexterm></cindex>
+<beforefirstitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1615">Charlie Zender</indexterm></cindex>
</beforefirstitem><tableentry><tableterm><item spaces=" "><itemformat command="asis">Charlie Zender</itemformat></item>
</tableterm><tableitem><para>All concept, design and implementation from 1995&textndash;2000.
Since then autotools, bug-squashing, <acronym><acronymword>CDL</acronymword></acronym>, chunking,
@@ -16602,7 +16713,7 @@ documentation, anchoring, recursion, <acronym><acronymword>GPE</acronymword></ac
<command>ncbo</command>, <command>ncpdq</command>, SMP threading and MPI parallelization,
netCDF4 integration, external funding, project management, science
research, releases.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1609">Henry Butowsky</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1616">Henry Butowsky</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Henry Butowsky</itemformat></item>
</tableterm><tableitem><para>Non-linear operations and <code>min()</code>, <code>max()</code>, <code>total()</code>
support in <command>ncra</command> and <command>ncwa</command>.
@@ -16613,114 +16724,114 @@ Multislabbing algorithm.
Variable wildcarding.
Numerous hacks.
<command>ncap2</command> language.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1610">Rorik Peterson</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1617">Rorik Peterson</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Rorik Peterson</itemformat></item>
</tableterm><tableitem><para>Original autotool build support.
Long command-line options.
Original UDUnits support.
Debianization.
Numerous bug-fixes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1611">Joe Hamman</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1618">Joe Hamman</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Joe Hamman</itemformat></item>
</tableterm><tableitem><para>Python bindings (NCOpy).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1612">Daniel Wang</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1619">Daniel Wang</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Daniel Wang</itemformat></item>
</tableterm><tableitem><para>Script Workflow Analysis for MultiProcessing (<acronym><acronymword>SWAMP</acronymword></acronym>).
<acronym><acronymword>RPM</acronymword></acronym> support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1613">Harry Mangalam</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1620">Harry Mangalam</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Harry Mangalam</itemformat></item>
</tableterm><tableitem><para>Benchmarking.
OPeNDAP configuration.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1614">Pedro Vicente</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1621">Pedro Vicente</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Pedro Vicente</itemformat></item>
</tableterm><tableitem><para>Windows Visual Studio support.
netCDF4 groups.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1615">Russ Rew</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1622">Russ Rew</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Russ Rew</itemformat></item>
</tableterm><tableitem><para>Advice on NCO structural algorithms
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1616">Brian Mays</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1623">Brian Mays</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Brian Mays</itemformat></item>
</tableterm><tableitem><para>Original packaging for Debian <acronym><acronymword>GNU</acronymword></acronym>/Linux, <command>nroff</command> man pages.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1617">George Shapovalov</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1624">George Shapovalov</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">George Shapovalov</itemformat></item>
</tableterm><tableitem><para>Packaging for Gentoo <acronym><acronymword>GNU</acronymword></acronym>/Linux.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1618">Bill Kocik</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1625">Bill Kocik</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Bill Kocik</itemformat></item>
</tableterm><tableitem><para>Memory management.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1619">Len Makin</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1626">Len Makin</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Len Makin</itemformat></item>
</tableterm><tableitem><para>NEC SX architecture support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1620">Jim Edwards</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1627">Jim Edwards</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Jim Edwards</itemformat></item>
</tableterm><tableitem><para>AIX architecture support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1621">Juliana Rew</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1628">Juliana Rew</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Juliana Rew</itemformat></item>
</tableterm><tableitem><para>Compatibility with large <acronym><acronymword>PID</acronymword></acronym>s.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1622">Karen Schuchardt</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1629">Karen Schuchardt</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Karen Schuchardt</itemformat></item>
</tableterm><tableitem><para>Auxiliary coordinate support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1623">Gayathri Venkitachalam</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1630">Gayathri Venkitachalam</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Gayathri Venkitachalam</itemformat></item>
</tableterm><tableitem><para><acronym><acronymword>MPI</acronymword></acronym> implementation.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1624">Scott Capps</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1631">Scott Capps</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Scott Capps</itemformat></item>
</tableterm><tableitem><para>Large work-load testing
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1625">Peter Campbell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1626">Martin Dix</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1627">Mark Flanner</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1628">Markus Liebig</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1629">Keith Lindsay</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1630">Stu Muller</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1631">Mike Page</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1632">Martin Schmidt</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1633">Lori Sentman</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1634">Michael Schulz</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1635">Gary Strand</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1636">Andrew Wittenberg</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1637">George White</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1638">Remik Ziemlinski</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1632">Peter Campbell</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1633">Martin Dix</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1634">Mark Flanner</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1635">Markus Liebig</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1636">Keith Lindsay</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1637">Stu Muller</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1638">Mike Page</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1639">Martin Schmidt</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1640">Lori Sentman</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1641">Michael Schulz</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1642">Gary Strand</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1643">Andrew Wittenberg</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1644">George White</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1645">Remik Ziemlinski</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Peter Campbell, Martin Dix, Mark Flanner, Markus Liebig, Keith Lindsay, Mike Page, Martin Schmidt, Michael Schulz, Lori Sentman, Gary Strand, George White Andrew Wittenberg, Remik Ziemlinski</itemformat></item>
</tableterm><tableitem><para>Excellent bug reports and feature requests.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1639">Daniel Baumann</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1640">Nick Bower</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1641">Luk Claes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1642">Barry deFreese</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1643">Aleksandar Jelenak</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1644">Francesco Lovergine</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1645">Matej Vela</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1646">Daniel Baumann</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1647">Nick Bower</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1648">Luk Claes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1649">Barry deFreese</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1650">Aleksandar Jelenak</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1651">Francesco Lovergine</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1652">Matej Vela</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Daniel Baumann, Nick Bower, Luk Claebs, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela</itemformat></item>
</tableterm><tableitem><para>Debian packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1646">Patrice Dumas</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1647">Ed Hill</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1648">Orion Powlawski</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1653">Patrice Dumas</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1654">Ed Hill</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1655">Orion Powlawski</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Patrice Dumas, Ed Hill, Orion Poplawski</itemformat></item>
</tableterm><tableitem><para>RedHat packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1649">George Shapavalov</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1650">Patrick Kursawe</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1656">George Shapavalov</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1657">Patrick Kursawe</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">George Shapavalov, Patrick Kursawe</itemformat></item>
</tableterm><tableitem><para>Gentoo packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1651">Filipe Fernandes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1658">Filipe Fernandes</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Filipe Fernandes</itemformat></item>
</tableterm><tableitem><para>OpenSuse packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1652">Alexander Hansen</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1653">Takeshi Enomoto</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1659">Alexander Hansen</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1660">Takeshi Enomoto</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Takeshi Enomoto, Alexander Hansen</itemformat></item>
</tableterm><tableitem><para>Mac OS packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1654">Eric Blake</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1661">Eric Blake</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Eric Blake</itemformat></item>
</tableterm><tableitem><para>Autoconf/M4 help
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1655">Gavin Burris</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1656">Kyle Wilcox</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1662">Gavin Burris</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1663">Kyle Wilcox</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Gavin Burris, Kyle Wilcox</itemformat></item>
</tableterm><tableitem><para>RHEL and CentOS build scripts and bug reports.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1657">Andrea Cimatoribus</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1664">Andrea Cimatoribus</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Andrea Cimatoribus</itemformat></item>
</tableterm><tableitem><para><acronym><acronymword>NCO</acronymword></acronym> Spiral Logo
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1658">Martin Otte</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1659">Etienne Tourigny</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1665">Martin Otte</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1666">Etienne Tourigny</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Martin Otte, Etienne Tourigny</itemformat></item>
</tableterm><tableitem><para>Single bug reports and fixes
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1660">Wenshan Wang</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1667">Wenshan Wang</indexterm></cindex>
</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Wenshan Wang</itemformat></item>
</tableterm><tableitem><para><acronym><acronymword>CMIP5</acronymword></acronym> and <acronym><acronymword>MODIS</acronymword></acronym> processing documentation.
</para></tableitem></tableentry></table>
@@ -16738,27 +16849,27 @@ netCDF4 groups.
</section>
<node name="Proposals-for-Institutional-Funding" spaces=" "><nodename>Proposals for Institutional Funding</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Contributors</nodeprev><nodeup spaces=" ">Contributing</nodeup></node>
<section spaces=" "><sectiontitle>Proposals for Institutional Funding</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1661">funding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1662">proposals</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1663"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1664">server-side processing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1665">Distributed Data Reduction & Analysis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1666">Scientific Data Operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1667"><acronym><acronymword>DDRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1668">Server-Side Distributed Data Reduction & Analysis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1669"><acronym><acronymword>SSDDRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1670"><acronym><acronymword>CCSM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1671"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1672"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1673"><acronym><acronymword>SDO</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1674"><acronym><acronymword>SEIII</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1675">OptIPuter</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1668">funding</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1669">proposals</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1670"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1671">server-side processing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1672">Distributed Data Reduction & Analysis</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1673">Scientific Data Operators</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1674"><acronym><acronymword>DDRA</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1675">Server-Side Distributed Data Reduction & Analysis</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1676"><acronym><acronymword>SSDDRA</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1677"><acronym><acronymword>CCSM</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1678"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1679"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1680"><acronym><acronymword>SDO</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1681"><acronym><acronymword>SEIII</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1682">OptIPuter</indexterm></cindex>
<para><acronym><acronymword>NSF</acronymword></acronym> has funded a
<uref><urefurl>http://nco.sf.net#prp_sei</urefurl><urefdesc spaces=" ">project</urefdesc></uref>
to improve Distributed Data Reduction & Analysis (<acronym><acronymword>DDRA</acronymword></acronym>) by
evolving <acronym><acronymword>NCO</acronymword></acronym> into a suite of Scientific Data Operators called
<acronym><acronymword>SDO</acronymword></acronym>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1676">parallelism</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1683">parallelism</indexterm></cindex>
The two main components of this project are <acronym><acronymword>NCO</acronymword></acronym> parallelism
(OpenMP, <acronym><acronymword>MPI</acronymword></acronym>) and Server-Side <acronym><acronymword>DDRA</acronymword></acronym>
(<acronym><acronymword>SSDDRA</acronymword></acronym>) implemented through extensions to <acronym><acronymword>OPeNDAP</acronymword></acronym>
@@ -16766,9 +16877,9 @@ and netCDF4.
This project will dramatically reduce bandwidth usage for <acronym><acronymword>NCO</acronymword></acronym>
<acronym><acronymword>DDRA</acronymword></acronym>.
</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1677"><acronym><acronymword>NASA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1678"><acronym><acronymword>NRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1679"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1684"><acronym><acronymword>NASA</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1685"><acronym><acronymword>NRA</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1686"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
<para>With this first <acronym><acronymword>NCO</acronymword></acronym> proposal funded, the content of the
next <acronym><acronymword>NCO</acronymword></acronym> proposal is clear.
We are interested in obtaining <acronym><acronymword>NASA</acronymword></acronym> support for
@@ -16788,7 +16899,7 @@ Comments on the proposals and letters of support are also very welcome.
</chapter>
<node name="Quick-Start" spaces=" "><nodename>Quick Start</nodename><nodenext spaces=" ">CMIP5 Example</nodenext><nodeprev spaces=" ">Contributing</nodeprev><nodeup spaces=" ">Top</nodeup></node>
<chapter spaces=" "><sectiontitle>Quick Start</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1680">Quick Start</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1687">Quick Start</indexterm></cindex>
<para>Simple examples in Bash shell scripts showing how to average data with
different file structures.
Here we include monthly, seasonal and annual average with daily or
@@ -16803,15 +16914,15 @@ monthly data in either one file or multiple files.
<node name="Daily-data-in-one-file" spaces=" "><nodename>Daily data in one file</nodename><nodenext spaces=" ">Monthly data in one file</nodenext><nodeprev spaces=" ">Quick Start</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
<section spaces=" "><sectiontitle>Daily data in one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1681">daily data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1688">daily data</indexterm></cindex>
<para>Suppose we have daily data from Jan 1st, 1990 to Dec. 31, 2005 in the
file of <file>in.nc</file> with the record dimension as <code>time</code>.
</para>
<noindent></noindent>
<para><strong>Monthly average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1682">monthly average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1683">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1684">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1689">monthly average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1690">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1691">time-averaging</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">for yyyy in {1990..2005}; do # Loop over years
for moy in {1..12}; do # Loop over months
@@ -16829,9 +16940,9 @@ ncrcat -O in_??????.nc out.nc
<noindent></noindent>
<para><strong>Annual average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1685">annual average from daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1686">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1687">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1692">annual average from daily data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1693">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1694">time-averaging</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">for yyyy in {1990..2005}; do # Loop over years
ncra -O -d time,"${yyyy}-01-01","${yyyy}-12-31" in.nc in_${yyyy}.nc
@@ -16848,23 +16959,23 @@ There are detailed instructions on <command>ncra</command> (<pxref label="ncra-n
</section>
<node name="Monthly-data-in-one-file" spaces=" "><nodename>Monthly data in one file</nodename><nodenext spaces=" ">One time point one file</nodenext><nodeprev spaces=" ">Daily data in one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
<section spaces=" "><sectiontitle>Monthly data in one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1688">monthly data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1695">monthly data</indexterm></cindex>
<para>Inside the input file <file>in.nc</file>, the record dimension <code>time</code> is from Jan 1990 to Dec 2005.
</para>
<noindent></noindent>
<para><strong>Seasonal average (e.g., DJF):</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1689">seasonal average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1690">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1691">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1696">seasonal average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1697">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1698">time-averaging</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncra -O --mro -d time,"1990-12-01",,12,3 in.nc out.nc
</pre></example>
<noindent></noindent>
<para><strong>Annual average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1692">annual average from monthly data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1693">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1694">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1699">annual average from monthly data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1700">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1701">time-averaging</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve">ncra -O --mro -d time,,,12,12 in.nc out.nc
</pre></example>
@@ -16889,10 +17000,10 @@ you can leave it blank if you want to include the minimum or the maximum of the
</section>
<node name="One-time-point-one-file" spaces=" "><nodename>One time point one file</nodename><nodenext spaces=" ">Multiple files with multiple time points</nodenext><nodeprev spaces=" ">Monthly data in one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
<section spaces=" "><sectiontitle>One time point one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1695">daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1696">monthly data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1697">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1698">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1702">daily data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1703">monthly data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1704">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1705">time-averaging</indexterm></cindex>
<para>This means if you have daily data of 30 days, there will be 30 data files.
Or if you have monthly data of 12 months, there will be 12 data files.
Dealing with this kind of files, you need to specify the file names in shell scripts and pass them to NCO operators.
@@ -16913,8 +17024,8 @@ done
</section>
<node name="Multiple-files-with-multiple-time-points" spaces=" "><nodename>Multiple files with multiple time points</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">One time point one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
<section spaces=" "><sectiontitle>Multiple files with multiple time points</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1699">daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1700">monthly data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1706">daily data</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1707">monthly data</indexterm></cindex>
<para>Similar as the last one, it&textrsquo;s more about shell scripts.
Suppose you have daily data with one month of them in one data file.
The monthly average is simply to apply <command>ncra</command> on the specific data file.
@@ -16927,7 +17038,7 @@ And for seasonal averages, you can specify the three months by shell scripts.
</chapter>
<node name="CMIP5-Example" spaces=" "><nodename>CMIP5 Example</nodename><nodenext spaces=" ">Parallel</nodenext><nodeprev spaces=" ">Quick Start</nodeprev><nodeup spaces=" ">Top</nodeup></node>
<chapter spaces=" "><sectiontitle><acronym><acronymword>CMIP5</acronymword></acronym> Example</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1701"><acronym><acronymword>CMIP5</acronymword></acronym></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1708"><acronym><acronymword>CMIP5</acronymword></acronym></indexterm></cindex>
<ignore>
This @uref{http://nco.sf.net/xmp_cesm.html,Wonderful CMIP5 Documentation}
shows complete processing of the @acronym{CMIP5} dataset.
@@ -16976,7 +17087,7 @@ group-based processing as well.
<node name="Combine-Files" spaces=" "><nodename>Combine Files</nodename><nodenext spaces=" ">Global Distribution of Long-term Average</nodenext><nodeprev spaces=" ">CMIP5 Example</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Combine Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1702">file combination</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1709">file combination</indexterm></cindex>
<para>Sometimes, the data of one ensemble member will be stored in several
files to reduce single file size.
But it is not convenient to process in a batch mode.
@@ -17005,10 +17116,10 @@ These ensemble members are on the third level.
In each sub-group of ensemble members, we appended two variables,
<var>snc</var> and <var>snd</var> (these stand for snow cover and snow depth, by
the way).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1703"><option>--gag</option></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1704">aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1705">group aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1706">groups, creating</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1710"><option>--gag</option></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1711">aggregation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1712">group aggregation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1713">groups, creating</indexterm></cindex>
</para><example endspaces=" ">
<verbatiminclude file="xmp/cmb_fl_grp.sh" spaces=" ">xmp/cmb_fl_grp.sh</verbatiminclude>
</example>
@@ -17016,10 +17127,10 @@ the way).
</section>
<node name="Global-Distribution-of-Long_002dterm-Average" spaces=" "><nodename>Global Distribution of Long-term Average</nodename><nodenext spaces=" ">Annual Average over Regions</nodenext><nodeprev spaces=" ">Combine Files</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Global Distribution of Long-term Average</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1707">spatial distribution</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1708">long-term average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1709">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1710">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1714">spatial distribution</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1715">long-term average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1716">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1717">time-averaging</indexterm></cindex>
<float name="fgr_003aglb" type="Figure" number="7.1" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:glb</floatname>
<image><imagefile>xmp/fgr1</imagefile><imagewidth>3.5in</imagewidth></image>
<caption><para>Global Distribution of Long-term Average.</para></caption>
@@ -17039,12 +17150,8 @@ Key steps include:
<verbatiminclude file="xmp/glb_avg.sh" spaces=" ">xmp/glb_avg.sh</verbatiminclude>
</example>
-<para>With the use of <key>group</key>, the above script
-will be shortened to just <w>ONE LINE</w>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1711">groups, averaging</indexterm></cindex>
-<ignore>
-Isn't it amazing or what?!
-</ignore>
+<para>With the use of <key>group</key>, the above script will be shortened to <w>ONE LINE</w>.
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1718">groups, averaging</indexterm></cindex>
</para><example endspaces=" ">
<pre xml:space="preserve"># Data from cmb_fl_grp.sh
# ensemble averaging
@@ -17068,20 +17175,20 @@ ensembles with only one ensemble member will be left untouched.
</section>
<node name="Annual-Average-over-Regions" spaces=" "><nodename>Annual Average over Regions</nodename><nodenext spaces=" ">Monthly Cycle</nodenext><nodeprev spaces=" ">Global Distribution of Long-term Average</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Annual Average over Regions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1712">annual average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1713">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1714">time-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1715">area-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1716">dimension order</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1717">anomalies</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1718">standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1719">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1720">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1721">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1722">attributes, overwriting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1723">regression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1724">nco script file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1725">variables, appending</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1719">annual average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1720">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1721">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1722">area-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1723">dimension order</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1724">anomalies</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1725">standard deviation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1726">renaming variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1727">attributes, editing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1728">attributes, modifying</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1729">attributes, overwriting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1730">regression</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1731">nco script file</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1732">variables, appending</indexterm></cindex>
<float name="fgr_003aanl" type="Figure" number="7.2" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:anl</floatname>
<image><imagefile>xmp/fgr2</imagefile><imagewidth>4in</imagewidth></image>
<caption><para>Annual Average over Regions.</para></caption>
@@ -17116,12 +17223,12 @@ all the loops over experiments, models and ensemble members can be omitted.
As we are working on implementing <key>group</key> feature in all <acronym><acronymword>NCO</acronymword></acronym> operators,
some functions (e.g., regression and standard deviation over ensemble members)
may have to wait until the new versions.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1726">group, spatial averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1727">group, temporal averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1728">group, anomaly</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1729">group, standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1730">group, aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1731">group, dimension permutation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1733">group, spatial averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1734">group, temporal averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1735">group, anomaly</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1736">group, standard deviation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1737">group, aggregation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1738">group, dimension permutation</indexterm></cindex>
</para><example endspaces=" ">
<verbatiminclude file="xmp/ann_avg_grp.sh" spaces=" ">xmp/ann_avg_grp.sh</verbatiminclude>
</example>
@@ -17129,12 +17236,12 @@ may have to wait until the new versions.
</section>
<node name="Monthly-Cycle" spaces=" "><nodename>Monthly Cycle</nodename><nodenext spaces=" ">Regrid MODIS Data</nodenext><nodeprev spaces=" ">Annual Average over Regions</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Monthly Cycle</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1732">monthly average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1733">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1734">time-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1735">anomalies</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1736">geographical weight</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1737">weighted average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1739">monthly average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1740">average</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1741">time-averaging</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1742">anomalies</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1743">geographical weight</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1744">weighted average</indexterm></cindex>
<float name="fgr_003amon" type="Figure" number="7.3" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:mon</floatname>
<image><imagefile>xmp/fgr3</imagefile><imagewidth>4in</imagewidth></image>
<caption><para>Monthly Cycle.</para></caption>
@@ -17160,16 +17267,16 @@ the script will be shortened.
</section>
<node name="Regrid-MODIS-Data" spaces=" "><nodename>Regrid MODIS Data</nodename><nodenext spaces=" ">Add Coordinates to MODIS Data</nodenext><nodeprev spaces=" ">Monthly Cycle</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Regrid <acronym><acronymword>MODIS</acronymword></acronym> Data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1738">regrid</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1739">MODIS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1740">bilinear interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1741">interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1742">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1743">renaming attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1744">renaming dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1745">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1746">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1747">attributes, overwriting</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1745">regrid</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1746">MODIS</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1747">bilinear interpolation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1748">interpolation</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1749">renaming variables</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1750">renaming attributes</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1751">renaming dimensions</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1752">attributes, editing</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1753">attributes, modifying</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1754">attributes, overwriting</indexterm></cindex>
<para>In order to compare the results between <acronym><acronymword>MODIS</acronymword></acronym> and
<acronym><acronymword>CMIP5</acronymword></acronym> models, one usually regrids one or both datasets so
that the spatial resolutions match.
@@ -17191,8 +17298,8 @@ Key steps include:
</section>
<node name="Add-Coordinates-to-MODIS-Data" spaces=" "><nodename>Add Coordinates to MODIS Data</nodename><nodenext spaces=" ">Permute MODIS Coordinates</nodenext><nodeprev spaces=" ">Regrid MODIS Data</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Add Coordinates to <acronym><acronymword>MODIS</acronymword></acronym> Data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1748">MODIS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1749">coordinates</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1755">MODIS</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1756">coordinates</indexterm></cindex>
<para><strong>Main Script</strong>
</para><example endspaces=" ">
<verbatiminclude file="xmp/add_crd.sh" spaces=" ">xmp/add_crd.sh</verbatiminclude>
@@ -17205,7 +17312,7 @@ Key steps include:
</section>
<node name="Permute-MODIS-Coordinates" spaces=" "><nodename>Permute MODIS Coordinates</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Add Coordinates to MODIS Data</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
<section spaces=" "><sectiontitle>Permute <acronym><acronymword>MODIS</acronymword></acronym> Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1750">coordinates, modifying</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1757">coordinates, modifying</indexterm></cindex>
<!-- c NB: 20140130: @textdegree is in TeXInfo 4.12 but Mac OS X 10.8 ships with 4.8 -->
<para><acronym><acronymword>MODIS</acronymword></acronym> orders latitude data from 90°N to
-90°N, and longitude from -180°E to
@@ -17252,7 +17359,7 @@ Here is an example showing:
</chapter>
<node name="Parallel" spaces=" "><nodename>Parallel</nodename><nodenext spaces=" ">CCSM Example</nodenext><nodeprev spaces=" ">CMIP5 Example</nodeprev><nodeup spaces=" ">Top</nodeup></node>
<chapter spaces=" "><sectiontitle>Parallel</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1751"><command>parallel</command></indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1758"><command>parallel</command></indexterm></cindex>
<para>This section will describe scripting strategies, including the use of
<acronym><acronymword>GNU</acronymword></acronym> Parallel, to <acronym><acronymword>NCO</acronymword></acronym>.
</para><example endspaces=" ">
@@ -17265,7 +17372,7 @@ Here is an example showing:
</chapter>
<node name="CCSM-Example" spaces=" "><nodename>CCSM Example</nodename><nodenext spaces=" ">mybibnode</nodenext><nodeprev spaces=" ">Parallel</nodeprev><nodeup spaces=" ">Top</nodeup></node>
<chapter spaces=" "><sectiontitle>CCSM Example</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1752">CCSM</indexterm></cindex>
+<cindex index="cp" spaces=" "><indexterm index="cp" number="1759">CCSM</indexterm></cindex>
<para>This chapter illustrates how to use <acronym><acronymword>NCO</acronymword></acronym> to
process and analyze the results of a <acronym><acronymword>CCSM</acronymword></acronym> climate simulation.
diff --git a/doc/surfit_2013.txt b/doc/surfit_2013.txt
index 222ec30..79ca11c 100644
--- a/doc/surfit_2013.txt
+++ b/doc/surfit_2013.txt
@@ -2,7 +2,7 @@
# (Summer Undergraduate Research Fellowships in Information Technologies)
# Submitted to Stu Ross 20130228
-(20130520: Notes on future SURFIT ads:
+(20130520: Notes on future SURF-IT ads:
1. Make first affiliation CS not ESS to get more CS applicants
2. Format ads so Windows line-breaking won't create widows/orphans
3. Prerequisites: Good programming skills at the level of third year
diff --git a/doc/surfit_2013.txt b/doc/surfit_2014.txt
similarity index 64%
copy from doc/surfit_2013.txt
copy to doc/surfit_2014.txt
index 222ec30..e160fd3 100644
--- a/doc/surfit_2013.txt
+++ b/doc/surfit_2014.txt
@@ -1,46 +1,22 @@
-# Purpose: Project description for 2013 UCI Calit2 Surf-IT program
+# Purpose: Project description for 2014 UCI Calit2 Surf-IT program
# (Summer Undergraduate Research Fellowships in Information Technologies)
-# Submitted to Stu Ross 20130228
-
-(20130520: Notes on future SURFIT ads:
-1. Make first affiliation CS not ESS to get more CS applicants
-2. Format ads so Windows line-breaking won't create widows/orphans
-3. Prerequisites: Good programming skills at the level of third year
-computer science. Proficiency with C and a scripting language.)
+# 20140416: Submitted to Brittany Gray <grayb at uci.edu>
Optimized Storage Shapes for Multi-dimensional Gridded Datasets
PI: Prof. Charlie Zender
- Departments of Earth System Science and Computer Science
+ Departments of Computer Science and of Earth System Science
Description:
-Many if not most geophysical datasets such as climate simulations
-are stored in a self-describing data format called netCDF.
-Data access speeds vary by factors of thousands, and depends primarily
-upon how well their storage layout matches the hyperslab request.
-This project will improve understanding and parameterization of the
-optimal layout (i.e., the "chunking") to maximize fast access and
-minimize slow access to netCDF datasets.
-
-Our netCDF Operators (NCO) are a widely used, opensource toolkit for
-manipulating and analyzing (statistics, trends, comparison with
-observations) netCDF data. NCO supports a range of chunking policies,
-but has no heuristic for guiding the user on optimal chunking.
-The student will first conduct sensitivity tests to benchmark access
-times for common hyperslab requests. Then the student will construct
-and implement new, optimal chunking policies.
-
-The first few weeks would be devoted to literature review and to
-scripting benchmark tests to assess the dependence of wallclock time
-on data layout. The next few weeks would be analysis and hypothesis
-testing of generic chunking policies motivated by the benchmarking
-results. The last few weeks would be implementation and analysis of
-optimized chunking policies in NCO.
-
-Prerequisites: Proficiency with C and multi-dimensional data
-
-Outcomes: Skills and understanding of scientific data analysis,
-benchmarking, interpretation of results.
+Many if not most geophysical datasets such as climate simulations are stored in a self-describing data format called netCDF. Data access speeds vary by factors of thousands, and depends primarily upon how well their storage layout matches the hyperslab request. This project will improve understanding and parameterization of the optimal layout (i.e., the "chunking") to maximize fast access and minimize slow access to netCDF datasets.
+
+Our netCDF Operators (NCO) are a widely used, opensource toolkit for manipulating and analyzing (statistics, trends, comparison with observations) netCDF data. NCO supports a range of chunking policies, yet has no heuristic for guiding the user on optimal chunking. The student will first conduct sensitivity tests to benchmark access times for common hyperslab requests. Then the student will construct and implement new, optimal chunking policies. The goal is for the student to systematica [...]
+
+The first few weeks would be devoted to literature review and to scripting benchmark tests to assess the dependence of wallclock time on data layout. The next few weeks would be analysis and hypothesis testing of generic chunking policies motivated by the benchmarking results. The last few weeks would be implementation and analysis of optimized chunking policies in NCO.
+
+Prerequisites: Good programming skills at the level of third year computer science. Proficiency with C and a scripting language.
+
+Outcomes: Skills and understanding of scientific data analysis, benchmarking, interpretation of results.
Recommended Web sites and publications:
1. Chunking Data: Why it Matters
diff --git a/man/ncap.1 b/man/ncap.1
index ede9730..cdf6477 100644
--- a/man/ncap.1
+++ b/man/ncap.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.22 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.23 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncap
.\" Usage:
.\" nroff -man ~/nco/man/ncap.1 | less
@@ -92,7 +92,7 @@ ncap \-s "T2=T*T" in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.22 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.23 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -105,7 +105,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncap2.1 b/man/ncap2.1
index ddc9697..1dfaf4d 100644
--- a/man/ncap2.1
+++ b/man/ncap2.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.17 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.18 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncap2
.\" Usage:
.\" nroff -man ~/nco/man/ncap2.1 | less
@@ -96,7 +96,7 @@ ncap2 \-s "T2=T*T" in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.17 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.18 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -109,7 +109,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncbo.1 b/man/ncbo.1
index 9737901..57e8c3a 100644
--- a/man/ncbo.1
+++ b/man/ncbo.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.26 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.27 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncbo
.\" Usage:
.\" nroff -man ~/nco/man/ncbo.1 | less
@@ -337,7 +337,7 @@ ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.26 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.27 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -350,7 +350,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncdiff.1 b/man/ncdiff.1
index 484c582..7f9be9a 100644
--- a/man/ncdiff.1
+++ b/man/ncdiff.1
@@ -316,7 +316,7 @@ ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncdiff.1,v 1.22 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncdiff.1,v 1.23 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -329,7 +329,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2012 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncea.1 b/man/ncea.1
index a1bc107..d6ff42f 100644
--- a/man/ncea.1
+++ b/man/ncea.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.28 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.29 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncea
.\" Usage:
.\" nroff -man ~/nco/man/ncea.1 | less
@@ -135,7 +135,7 @@ input files.
Additionally, only data inside the tropics is included.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.28 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.29 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -148,7 +148,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/nces.1 b/man/nces.1
index 2e342f6..23c05df 100644
--- a/man/nces.1
+++ b/man/nces.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.3 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.4 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for nces
.\" Usage:
.\" nroff -man ~/nco/man/nces.1 | less
@@ -135,7 +135,7 @@ input files.
Additionally, only data inside the tropics is included.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.3 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.4 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -148,7 +148,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncflint.1 b/man/ncflint.1
index 6a3bfd7..aa49269 100644
--- a/man/ncflint.1
+++ b/man/ncflint.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.24 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.25 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncflint
.\" Usage:
.\" nroff -man ~/nco/man/ncflint.1
@@ -160,7 +160,7 @@ and
This behavior is hardcoded.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.24 2013/11/06 17:51:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.25 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -173,7 +173,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncks.1 b/man/ncks.1
index c3794ab..233c036 100644
--- a/man/ncks.1
+++ b/man/ncks.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.44 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.46 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncks
.\" Usage:
.\" nroff -man ~/nco/man/ncks.1 | less
@@ -45,7 +45,7 @@ dbg_lvl]
[\-P] [\-p
.IR path ]
[-Q] [\-q]
-[\-R] [\-r] [\-\-ram_all] [\-s
+[\-R] [\-r] [\-\-rad] [\-\-ram_all] [\-s
.IR format ]
[\-u] [\--unn] [\-v
.IR var [,...]]
@@ -590,7 +590,7 @@ ncks \-d lon,260.,45. in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.44 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.46 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -603,7 +603,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2012 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/nco.1 b/man/nco.1
index 66323ca..1dd20bf 100644
--- a/man/nco.1
+++ b/man/nco.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.9 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.10 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for nco
.\" Usage:
.\" nroff -man ~/nco/man/nco.1
@@ -113,7 +113,7 @@ special cases.
works well on all modern operating systems.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.9 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.10 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -126,7 +126,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncpdq.1 b/man/ncpdq.1
index bf2135b..4d26493 100644
--- a/man/ncpdq.1
+++ b/man/ncpdq.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.30 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncpdq
.\" Usage:
.\" nroff -man ~/nco/man/ncpdq.1 | less
@@ -117,7 +117,7 @@ The specified re-ordering will fail if it requires creating more than
one record dimension amongst all the output variables.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.30 2014/01/06 06:46:04 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -130,7 +130,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncra.1 b/man/ncra.1
index d74ccf0..6a6687a 100644
--- a/man/ncra.1
+++ b/man/ncra.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.36 2014/02/17 23:12:36 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.37 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncra
.\" Usage:
.\" nroff -man ~/nco/man/ncra.1 | less
@@ -144,7 +144,7 @@ ncra \-d time,6.,54. ??.nc 8506_8906.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.36 2014/02/17 23:12:36 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.37 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -157,7 +157,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncrcat.1 b/man/ncrcat.1
index d12c837..1995404 100644
--- a/man/ncrcat.1
+++ b/man/ncrcat.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.30 2014/02/14 05:24:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncrcat
.\" Usage:
.\" nroff -man ~/nco/man/ncrcat.1 | less
@@ -137,7 +137,7 @@ ncrcat \-d time,6.,54. ??.nc 8506_8906.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.30 2014/02/14 05:24:13 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -150,7 +150,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncrename.1 b/man/ncrename.1
index 309ab25..51c2a67 100644
--- a/man/ncrename.1
+++ b/man/ncrename.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.18 2013/12/02 00:31:21 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.19 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncrename
.\" Usage:
.\" nroff -man ~/nco/man/ncrename.1 | less
@@ -191,7 +191,7 @@ ncrename \-a _FillValue,missing_value \-a Zaire,Congo in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.18 2013/12/02 00:31:21 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.19 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -204,7 +204,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2012 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncwa.1 b/man/ncwa.1
index c09673c..843a82a 100644
--- a/man/ncwa.1
+++ b/man/ncwa.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.30 2014/02/17 23:12:36 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: ROFF man page for ncwa
.\" Usage:
.\" nroff -man ~/nco/man/ncwa.1 | less
@@ -202,7 +202,7 @@ The mathematical definition of operations involving rank reduction
is given above.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.30 2014/02/17 23:12:36 zender Exp $ -*-nroff-*-
+.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.31 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -215,7 +215,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2010 Charlie Zender
+Copyright \(co 1995-2014 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/qt/libnco/libnco.vcxproj b/qt/libnco/libnco.vcxproj
index 45d09d3..e6b1ce2 100644
--- a/qt/libnco/libnco.vcxproj
+++ b/qt/libnco/libnco.vcxproj
@@ -65,7 +65,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -153,6 +153,7 @@
<ClCompile Include="..\..\src\nco\nco_scl_utl.c" />
<ClCompile Include="..\..\src\nco\nco_scm.c" />
<ClCompile Include="..\..\src\nco\nco_sng_utl.c" />
+ <ClCompile Include="..\..\src\nco\nco_srm.c" />
<ClCompile Include="..\..\src\nco\nco_var_avg.c" />
<ClCompile Include="..\..\src\nco\nco_var_lst.c" />
<ClCompile Include="..\..\src\nco\nco_var_rth.c" />
@@ -196,6 +197,7 @@
<ClInclude Include="..\..\src\nco\nco_scl_utl.h" />
<ClInclude Include="..\..\src\nco\nco_scm.h" />
<ClInclude Include="..\..\src\nco\nco_sng_utl.h" />
+ <ClInclude Include="..\..\src\nco\nco_srm.h" />
<ClInclude Include="..\..\src\nco\nco_typ.h" />
<ClInclude Include="..\..\src\nco\nco_var_avg.h" />
<ClInclude Include="..\..\src\nco\nco_var_lst.h" />
@@ -207,7 +209,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/libnco_c++/libnco_c++.vcxproj b/qt/libnco_c++/libnco_c++.vcxproj
index bae676d..01a6133 100644
--- a/qt/libnco_c++/libnco_c++.vcxproj
+++ b/qt/libnco_c++/libnco_c++.vcxproj
@@ -65,7 +65,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_WINDOWS;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_WINDOWS;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASESTR;ENABLE_GSL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -141,7 +141,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncap2/ncap2.vcxproj b/qt/ncap2/ncap2.vcxproj
index 8d57bbf..4288882 100644
--- a/qt/ncap2/ncap2.vcxproj
+++ b/qt/ncap2/ncap2.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -180,7 +180,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncatted/ncatted.vcxproj b/qt/ncatted/ncatted.vcxproj
index 8efefca..d03a5cd 100644
--- a/qt/ncatted/ncatted.vcxproj
+++ b/qt/ncatted/ncatted.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncbo/ncbo.vcxproj b/qt/ncbo/ncbo.vcxproj
index 56da291..ac2768f 100644
--- a/qt/ncbo/ncbo.vcxproj
+++ b/qt/ncbo/ncbo.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncea/ncea.vcxproj b/qt/ncea/ncea.vcxproj
index 5cdd7ce..7310c39 100644
--- a/qt/ncea/ncea.vcxproj
+++ b/qt/ncea/ncea.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncecat/ncecat.vcxproj b/qt/ncecat/ncecat.vcxproj
index 02bbcfd..4784e4d 100644
--- a/qt/ncecat/ncecat.vcxproj
+++ b/qt/ncecat/ncecat.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncflint/ncflint.vcxproj b/qt/ncflint/ncflint.vcxproj
index cfd0fe0..cb41664 100644
--- a/qt/ncflint/ncflint.vcxproj
+++ b/qt/ncflint/ncflint.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncks/ncks.vcxproj b/qt/ncks/ncks.vcxproj
index 319e9dd..3d03217 100644
--- a/qt/ncks/ncks.vcxproj
+++ b/qt/ncks/ncks.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/nco.sln b/qt/nco.sln
index c3dd3da..364dacc 100644
--- a/qt/nco.sln
+++ b/qt/nco.sln
@@ -146,5 +146,6 @@ Global
EndGlobalSection
GlobalSection(ExtensibilityGlobals) = postSolution
QtVersion = qt-everywhere-opensource-src-4.8.3
+ VisualSVNWorkingCopyRoot = ..
EndGlobalSection
EndGlobal
diff --git a/qt/ncpdq/ncpdq.vcxproj b/qt/ncpdq/ncpdq.vcxproj
index ecb41cd..78bcd12 100644
--- a/qt/ncpdq/ncpdq.vcxproj
+++ b/qt/ncpdq/ncpdq.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncra/ncra.vcxproj b/qt/ncra/ncra.vcxproj
index 5ad02aa..bdf3bdf 100644
--- a/qt/ncra/ncra.vcxproj
+++ b/qt/ncra/ncra.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncrcat/ncrcat.vcxproj b/qt/ncrcat/ncrcat.vcxproj
index b5487d2..4e75ff9 100644
--- a/qt/ncrcat/ncrcat.vcxproj
+++ b/qt/ncrcat/ncrcat.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncrename/ncrename.vcxproj b/qt/ncrename/ncrename.vcxproj
index bf897b8..2e5dc5d 100644
--- a/qt/ncrename/ncrename.vcxproj
+++ b/qt/ncrename/ncrename.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/ncwa/ncwa.vcxproj b/qt/ncwa/ncwa.vcxproj
index 2e8d59a..a24508a 100644
--- a/qt/ncwa/ncwa.vcxproj
+++ b/qt/ncwa/ncwa.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;NEED_STRCASECMP;NEED_STRCASESTR;ENABLE_GSL;ENABLE_DAP;ENABLE_NETCDF4;HAVE_NETCDF4_H;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/qt/tst_nco_c++/tst_nco_c++.vcxproj b/qt/tst_nco_c++/tst_nco_c++.vcxproj
index e09b6a5..46de417 100644
--- a/qt/tst_nco_c++/tst_nco_c++.vcxproj
+++ b/qt/tst_nco_c++/tst_nco_c++.vcxproj
@@ -66,7 +66,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>Disabled</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASECMP;NEED_STRCASESTR;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASECMP;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
@@ -107,7 +107,7 @@
<ExceptionHandling>Sync</ExceptionHandling>
<ObjectFileName>$(IntDir)</ObjectFileName>
<Optimization>MaxSpeed</Optimization>
- <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASECMP;NEED_STRCASESTR;NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <PreprocessorDefinitions>_CONSOLE;UNICODE;WIN32;QT_LARGEFILE_SUPPORT;_CRT_SECURE_NO_WARNINGS;_CRT_NONSTDC_NO_DEPRECATE;ENABLE_NETCDF4;HAVE_NETCDF4_H;NEED_STRCASECMP;NEED_STRCASESTR;NDEBUG;QT_DLL;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<PreprocessToFile>false</PreprocessToFile>
<ProgramDataBaseFileName>$(IntDir)vc$(PlatformToolsetVersion).pdb</ProgramDataBaseFileName>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
@@ -145,7 +145,7 @@
<ImportGroup Label="ExtensionTargets" />
<ProjectExtensions>
<VisualStudio>
- <UserProperties QtVersion_x0020_Win32="qt-everywhere-opensource-src-4.8.3" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
+ <UserProperties QtVersion_x0020_Win32="$(DefaultQtVersion)" UicDir=".\GeneratedFiles" RccDir=".\GeneratedFiles" />
</VisualStudio>
</ProjectExtensions>
</Project>
\ No newline at end of file
diff --git a/src/nco++/Makefile.old b/src/nco++/Makefile.old
index 8ee9ce4..05aa267 100644
--- a/src/nco++/Makefile.old
+++ b/src/nco++/Makefile.old
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco++/Makefile.old,v 1.124 2013/12/31 05:14:02 zender Exp $ -*-makefile-*-
+# $Header: /cvsroot/nco/nco/src/nco++/Makefile.old,v 1.125 2014/05/04 05:39:01 zender Exp $ -*-makefile-*-
# Purpose: Makefile for NCO C++ directory nco++
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -429,7 +429,12 @@ endif # end if
ifeq (${UDUNITS2},Y)
# 20130607: -lexpat needed on .deb systems, not on RPM systems
UDUNITS_RPM_DRC := /usr/include/udunits2
-UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ifneq (${UDUNITS_INC},/usr/local/include)
+# UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ UDUNITS_RPM_TST := ${UDUNITS_RPM_DRC}/udunits2.h
+else
+ UDUNITS_RPM_TST := /usr/include/udunits2.h
+endif # end if
ifeq (${UDUNITS_RPM_TST},${UDUNITS_RPM_DRC}/udunits2.h)
NETCDF_INC += -I${UDUNITS_RPM_DRC}
endif # end if
diff --git a/src/nco++/fmc_all_cls.cc b/src/nco++/fmc_all_cls.cc
index 242fc53..b8cce0a 100644
--- a/src/nco++/fmc_all_cls.cc
+++ b/src/nco++/fmc_all_cls.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/fmc_all_cls.cc,v 1.67 2014/03/25 14:21:26 hmb Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/fmc_all_cls.cc,v 1.68 2014/04/10 10:45:49 hmb Exp $ */
/* Purpose: netCDF arithmetic processor class methods: families of functions/methods */
@@ -932,14 +932,13 @@ var_sct * utl_cls::is_fnd(bool &is_mtd, std::vector<RefAST> &args_vtr, fmc_cls &
-
- if(prs_arg->ntl_scn)
- if(var1->undefined || var2->undefined){
+ // check for undefined
+ if( var1->undefined || var2->undefined ) {
var1=nco_var_free(var1);
var2=nco_var_free(var2);
var=ncap_var_udf("~mth2_cls");
return var;
- }
+ }
switch(fdx){
@@ -952,10 +951,13 @@ var_sct * utl_cls::is_fnd(bool &is_mtd, std::vector<RefAST> &args_vtr, fmc_cls &
var=ncap_var_var_op(var1,var2,ATAN2);
break;
- case PCONVERT:{
+ case PCONVERT:
+ if(prs_arg->ntl_scn){
+ var=ncap_var_udf("~mth2_cls");
+ }else{
+
/* Change type to int */
int c_typ;
-
var2=nco_var_cnf_typ(NC_INT,var2);
(void)cast_void_nctype(NC_INT,&var2->val);
c_typ=var2->val.ip[0];
@@ -963,8 +965,9 @@ var_sct * utl_cls::is_fnd(bool &is_mtd, std::vector<RefAST> &args_vtr, fmc_cls &
var2=nco_var_free(var2);
var=nco_var_cnf_typ( (nc_type)c_typ, var1);
+ }
break;
- }
+
}
diff --git a/src/nco++/ncap2_utl.cc b/src/nco++/ncap2_utl.cc
index 7e444ea..0cab060 100644
--- a/src/nco++/ncap2_utl.cc
+++ b/src/nco++/ncap2_utl.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/ncap2_utl.cc,v 1.157 2014/02/17 23:12:39 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/ncap2_utl.cc,v 1.158 2014/05/27 16:51:56 zender Exp $ */
/* Purpose: netCDF arithmetic processor */
@@ -2122,7 +2122,7 @@ ncap_cst_do(
// Return true if string is only made of 0..9 chars
bool
-str_is_num(
+str_is_nbr(
std::string snm)
{
unsigned idx;
@@ -2148,7 +2148,7 @@ ncap_dmn_mtd(
str_vtr_sz=str_vtr.size();
for(idx=0 ; idx <str_vtr_sz ; idx++){
// deal with position args e.g., $0,$1,$2 etc
- if( str_is_num(str_vtr[idx])) {
+ if( str_is_nbr(str_vtr[idx])) {
icnt=atoi(str_vtr[idx].c_str());
if(icnt < nbr_dim && !dmn_vtr.find(var->dim[icnt]->nm))
dmn_vtr.push_back( var->dim[icnt]);
diff --git a/src/nco++/ncoGrammer.g b/src/nco++/ncoGrammer.g
index 4a0639b..3a130bf 100644
--- a/src/nco++/ncoGrammer.g
+++ b/src/nco++/ncoGrammer.g
@@ -1,9 +1,9 @@
header {
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoGrammer.g,v 1.205 2014/02/17 23:12:39 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/ncoGrammer.g,v 1.206 2014/05/01 19:05:39 zender Exp $ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
-/* Copyright (C) 2005--2012 Henry Butowsky and Charlie Zender
+/* Copyright (C) 2005--2014 Charlie Zender
License: GNU General Public License (GPL) Version 3
See http://www.gnu.org/copyleft/gpl.html for full license text */
diff --git a/src/nco++/ncoLexer.hpp b/src/nco++/ncoLexer.hpp
index 29c89cd..433654d 100644
--- a/src/nco++/ncoLexer.hpp
+++ b/src/nco++/ncoLexer.hpp
@@ -10,11 +10,11 @@
#include <antlr/CharScanner.hpp>
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoLexer.hpp,v 1.129 2014/02/26 01:14:14 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/ncoLexer.hpp,v 1.130 2014/05/02 03:08:27 zender Exp $ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
-/* Copyright (C) 2005--2012 Henry Butowsky and Charlie Zender
+/* Copyright (C) 2005--2014 Charlie Zender
License: GNU General Public License (GPL) Version 3
See http://www.gnu.org/copyleft/gpl.html for full license text */
diff --git a/src/nco++/ncoParser.hpp b/src/nco++/ncoParser.hpp
index 7b883eb..ef14240 100644
--- a/src/nco++/ncoParser.hpp
+++ b/src/nco++/ncoParser.hpp
@@ -10,11 +10,11 @@
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoParser.hpp,v 1.126 2014/02/26 01:14:14 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/ncoParser.hpp,v 1.127 2014/05/02 03:08:27 zender Exp $ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
-/* Copyright (C) 2005--2012 Henry Butowsky and Charlie Zender
+/* Copyright (C) 2005--2014 Charlie Zender
License: GNU General Public License (GPL) Version 3
See http://www.gnu.org/copyleft/gpl.html for full license text */
diff --git a/src/nco++/ncoTree.hpp b/src/nco++/ncoTree.hpp
index e6fbb8f..923c715 100644
--- a/src/nco++/ncoTree.hpp
+++ b/src/nco++/ncoTree.hpp
@@ -8,11 +8,11 @@
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoTree.hpp,v 1.149 2014/02/26 01:14:15 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco++/ncoTree.hpp,v 1.150 2014/05/02 03:08:27 zender Exp $ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
-/* Copyright (C) 2005--2012 Henry Butowsky and Charlie Zender
+/* Copyright (C) 2005--2014 Charlie Zender
License: GNU General Public License (GPL) Version 3
See http://www.gnu.org/copyleft/gpl.html for full license text */
diff --git a/src/nco/ncap_lex.l b/src/nco/ncap_lex.l
index 1b76d4a..450f3e7 100644
--- a/src/nco/ncap_lex.l
+++ b/src/nco/ncap_lex.l
@@ -1,4 +1,4 @@
-%{ /* $Header: /cvsroot/nco/nco/src/nco/ncap_lex.l,v 1.80 2014/02/04 22:40:20 zender Exp $ -*-C-*- */
+%{ /* $Header: /cvsroot/nco/nco/src/nco/ncap_lex.l,v 1.86 2014/05/28 20:05:30 zender Exp $ -*-C-*- */
/* Everything from here to closing brace is placed at top of lexer */
/* Purpose: Token generator for ncap parser */
@@ -300,10 +300,20 @@ XPN [eE][+-]?[0-9]+
{DGT}*\.{DGT}*({XPN})?[LlDd]?|{DGT}*({XPN})[LlDd]? {
/* double or long double */
- /* NB: Tempted to prepend lexer expressions for floats and doubles with [+-]?
+ /* {DGT}*\.{DGT}*({XPN})?[LlDd]?|{DGT}*({XPN})[LlDd]? # Original rule and comments used until 20140527
+ NB: Tempted to prepend lexer expressions for floats and doubles with [+-]?
so that unary plus/minus is handled in lexer rather than parser.
- However, this has unintended side effects so let parser handle it for now */
- char *sng_cnv_rcd=char_CEWI; /* [sng] strtol()/strtoul() return code */
+ However, this has unintended side-effects so let parser handle it for now */
+ /* 20140527: Many years after writing the above line I regret not recording what those unintended side-effects were...
+ [+-]?{DGT}*\.{DGT}*({XPN})?[LlDd]?|{DGT}*({XPN})[LlDd]? # Potential rule tested 20140527
+ Not including sign signifiers [+-]? causes bug parsing --mask_condition expressions with negative msk_val
+ Without the optional signage, ncap_ncwa_scn() ignores unary negative sign so msk_val is returned as abs(msk_val)
+ Prepending [+-]? to number rules for doubles, floats etc fixes this particular problem but causes others
+ Specifically, when lexer ingests signage tokens then parser treatment of subtraction fails, e.g.,
+ ncap -O -D 4 -v -s 'zero=1-1.0' ~/nco/data/in.nc ~/foo.nc # Result is zero=1
+ Hence the "unintended side-effects" mentioned above includes, roughly,
+ that using [+-]? in lexer interferes with parser handling of unary signs */
+ char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
if(nco_dbg_lvl_get() > 3) (void)fprintf(stderr,"Lexing a double %s\n",yytext);
lval_ptr->scv.val.d=strtod(yytext,&sng_cnv_rcd);
if(*sng_cnv_rcd) nco_sng_cnv_err(yytext,"strtod",sng_cnv_rcd);
@@ -607,7 +617,6 @@ M_PI {return NAMED_CONSTANT;}
rcd_out=nco_inq_varid_flg(prs_arg->out_id,var_nm,&var_id);
-
if(rcd == NC_NOERR || rcd_out == NC_NOERR || blkp ){
lval_ptr->aed.att_nm=(char *)strdup(att_nm);
lval_ptr->aed.var_nm=(char *)strdup(var_nm);
@@ -763,14 +772,12 @@ M_PI {return NAMED_CONSTANT;}
var->sz*=var->cnt[idx];
} /* end loop over dim */
-
- /* don't initalize val in intial scan */
+ /* Do not initialize val in initial scan */
if(prs_arg->ntl_scn) {
var->val.vp=(void*)NULL;
goto end_var;
}
-
/* Allocate space for variable values
fxm: more efficient and safer to use nco_calloc() and not fill with values? */
if((var->val.vp=(void *)nco_malloc_flg(var->sz*nco_typ_lng(var->type))) == NULL){
@@ -1029,6 +1036,8 @@ ncap_ntl_scn /* [fnc] Scan command script, construct I/O lists */
/* Add dimensions defined in LHS subscripts */
lst_t=lst_d;
lst_t_nbr=lst_t_nbr+0;
+ /* 20140526: clang flags argument lval.sbs_lst->lst as incompatible with nm_id_sct * in receiving prototype
+ This is true. Not sure how/if this line ever worked. Were ncap not in maintenance mode, would be worth fixing? */
lst_d=nco_var_lst_add(lst_d,&lst_d_nbr,lval.sbs_lst->lst,lval.sbs_lst->nbr);
if(lst_t_nbr > 0) (void)nco_nm_id_lst_free(lst_t,lst_t_nbr);
break;
@@ -1059,12 +1068,12 @@ ncap_ncwa_scn /* [fnc] Scan command script, construct I/O lists */
/*
#include "ncap_yacc.h"
extern int yylex(YYSTYPE *lval_ptr,prs_sct *prs_arg);
- extern int yy_scan_string(const char *);
- */
+ extern int yy_scan_string(const char *); */
- nco_bool scv_def=False;
+ nco_bool scv_dfn=False;
+ nco_bool minus_dfn=False;
int op_typ=-1;
- int rcd=1;
+ int rcd=NCO_NOERR;
char *fnl_sng;
char *msk_nm_LHS=NULL;
scv_sct scv_out;
@@ -1093,9 +1102,13 @@ ncap_ncwa_scn /* [fnc] Scan command script, construct I/O lists */
case COMPARISON:
op_typ=lval.nco_rlt_opr;
break;
+ case '-':
+ minus_dfn=True;
+ break;
case SCV:
scv_out=lval.scv;
- scv_def=True;
+ if (minus_dfn) (void)ncap_scv_minus(&scv_out);
+ scv_dfn=True;
break;
default:
/* Tokens that fall through are perfectly safe and normal
@@ -1108,22 +1121,22 @@ ncap_ncwa_scn /* [fnc] Scan command script, construct I/O lists */
} /* end switch */
} /* end while */
- /* Check all three items have been scanned in */
+ /* Check that all three required items for an ncwa mask_condition have been scanned */
if(msk_nm_LHS == (char *)NULL){
(void)fprintf(stderr,"%s: Mask string (%s) does not contain valid variable name\n",nco_prg_nm_get(),msk_sng);
- rcd=0;
+ rcd=NCO_ERR;
}else{
*msk_nm=msk_nm_LHS;
} /* endif */
if(op_typ == -1){
(void)fprintf(stderr,"%s: Mask string (%s) does not contain valid comparison operator\n",nco_prg_nm_get(),msk_sng);
- rcd=0;
+ rcd=NCO_ERR;
}else{
*op_typ_rlt=op_typ;
} /* endif */
- if(scv_def == False){
+ if(scv_dfn == False){
(void)fprintf(stderr,"%s: Mask string (%s) does not contain valid number\n",nco_prg_nm_get(),msk_sng);
- rcd=0;
+ rcd=NCO_ERR;
}else{
(void)nco_scv_cnf_typ((nc_type)NC_DOUBLE,&scv_out);
*msk_val=scv_out.val.d;
diff --git a/src/nco/ncatted.c b/src/nco/ncatted.c
index bdd4df7..1b30894 100644
--- a/src/nco/ncatted.c
+++ b/src/nco/ncatted.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncatted.c,v 1.186 2014/03/27 19:19:28 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncatted.c,v 1.187 2014/05/21 20:39:29 zender Exp $ */
/* ncatted -- netCDF attribute editor */
@@ -158,8 +158,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncatted.c,v 1.186 2014/03/27 19:19:28 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.186 $";
+ const char * const CVS_Id="$Id: ncatted.c,v 1.187 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.187 $";
const char * const opt_sht_lst="Aa:D:hl:Oo:p:Rr-:";
#if defined(__cplusplus) || defined(PGI_CC)
@@ -371,7 +371,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl);
/* Construct GTT (Group Traversal Table) */
- (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,NULL,(int) 0,False,False,False,True,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,NULL,(int) 0,False,False,False,False,True,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Timestamp end of metadata setup and disk layout */
rcd+=nco_ddra((char *)NULL,(char *)NULL,&ddra_info);
@@ -390,7 +390,7 @@ main(int argc,char **argv)
var_lst_in=nco_lst_prs_2D(aed_lst[idx_aed].var_nm,",",&var_lst_in_nbr);
trv_tbl_init(&trv_tbl_rx);
/* Construct GTT (Group Traversal Table) */
- (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,var_lst_in,var_lst_in_nbr,False,False,False,False,nco_pck_plc_nil,&flg_dne,trv_tbl_rx);
+ (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,var_lst_in,var_lst_in_nbr,False,False,False,False,False,nco_pck_plc_nil,&flg_dne,trv_tbl_rx);
/* Edit same attribute for all variables ... */
(void)nco_aed_prc_var_xtr(nc_id,aed_lst[idx_aed],trv_tbl_rx);
trv_tbl_free(trv_tbl_rx);
diff --git a/src/nco/ncbo.c b/src/nco/ncbo.c
index 58d7497..4787f8a 100644
--- a/src/nco/ncbo.c
+++ b/src/nco/ncbo.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncbo.c,v 1.297 2014/03/27 19:19:29 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncbo.c,v 1.301 2014/05/21 20:39:29 zender Exp $ */
/* ncbo -- netCDF binary operator */
@@ -132,8 +132,8 @@ main(int argc,char **argv)
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncbo.c,v 1.297 2014/03/27 19:19:29 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.297 $";
+ const char * const CVS_Id="$Id: ncbo.c,v 1.301 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.301 $";
const char * const opt_sht_lst="3467ACcD:d:FG:g:hL:l:Oo:p:rRt:v:X:xzy:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -536,18 +536,18 @@ main(int argc,char **argv)
in_id_2=in_id_2_arr[0];
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id_1,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne1,trv_tbl_1);
- (void)nco_bld_trv_tbl(in_id_2,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne2,trv_tbl_2);
+ (void)nco_bld_trv_tbl(in_id_1,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne1,trv_tbl_1);
+ (void)nco_bld_trv_tbl(in_id_2,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne2,trv_tbl_2);
/* Merge DNE lists before checking */
flg_dne=(nco_dmn_dne_t *)nco_malloc(2*lmt_nbr*sizeof(nco_dmn_dne_t));
/* Merge "dne" lists */
for(int lmt_idx=0;lmt_idx<lmt_nbr;lmt_idx++) flg_dne[lmt_idx]=flg_dne1[lmt_idx];
- for(int lmt_idx=lmt_nbr;lmt_idx<2*lmt_nbr;lmt_idx++) flg_dne[lmt_idx]=flg_dne2[lmt_idx];
+ for(int lmt_idx=0;lmt_idx<lmt_nbr;lmt_idx++) flg_dne[lmt_nbr+lmt_idx]=flg_dne2[lmt_idx];
/* Check if all input -d dimensions were found */
- (void)nco_chk_dmn(lmt_nbr,flg_dne);
+ (void)nco_chk_dmn(lmt_nbr,flg_dne);
/* Get number of variables, dimensions, and global attributes in file, file format */
(void)trv_tbl_inq(&nbr_glb_att_1,&nbr_grp_att_1,&nbr_att_var_1,&nbr_dmn_fl_1,&nbr_rec_fl_1,&grp_dpt_fl_1,&nbr_grp_fl_1,&var_ntm_fl_1,&nbr_var_fl_1,trv_tbl_1);
diff --git a/src/nco/ncecat.c b/src/nco/ncecat.c
index 5e98854..9a8488a 100644
--- a/src/nco/ncecat.c
+++ b/src/nco/ncecat.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncecat.c,v 1.363 2014/03/27 19:19:29 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncecat.c,v 1.366 2014/05/21 20:39:29 zender Exp $ */
/* ncecat -- netCDF ensemble concatenator */
@@ -124,8 +124,8 @@ main(int argc,char **argv)
char grp_out_sfx[NCO_GRP_OUT_SFX_LNG+1L];
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncecat.c,v 1.363 2014/03/27 19:19:29 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.363 $";
+ const char * const CVS_Id="$Id: ncecat.c,v 1.366 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.366 $";
const char * const opt_sht_lst="3467ACcD:d:Fg:G:HhL:l:Mn:Oo:p:rRt:u:v:X:x-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -537,7 +537,7 @@ main(int argc,char **argv)
(void)nco_inq_format(in_id,&fl_in_fmt);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -609,12 +609,8 @@ main(int argc,char **argv)
} /* end loop over idx */
/* Define dimensions, extracted groups, variables, and attributes in output file */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,nco_pck_plc_nil,rec_dmn_nm,trv_tbl);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,rec_dmn_nm,trv_tbl);
- /* Copy global attributes */
-#ifdef COPY_ROOT_GLOBAL_ATTRIBUTES
- if(CPY_GLB_METADATA) (void)nco_att_cpy(in_id,out_id,NC_GLOBAL,NC_GLOBAL,(nco_bool)True); /* Superceded by nco_xtr_dfn() */
-#endif
/* Catenate time-stamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
/* Add input file list global attribute */
@@ -746,7 +742,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl_gpr);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr_rgn,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl_gpr);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr_rgn,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl_gpr);
/* Get number of variables, dimensions, and global attributes in file, file format */
(void)trv_tbl_inq((int *)NULL,(int *)NULL,(int *)NULL,&nbr_dmn_fl,(int *)NULL,(int *)NULL,(int *)NULL,(int *)NULL,&nbr_var_fl,trv_tbl_gpr);
@@ -755,7 +751,7 @@ main(int argc,char **argv)
/* We now have final list of variables to extract. Phew. */
/* Define extracted groups, variables, and attributes in output file */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,CPY_GLB_METADATA,(nco_bool)True,nco_pck_plc_nil,rec_dmn_nm,trv_tbl_gpr);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,CPY_GLB_METADATA,(nco_bool)True,(nco_bool)False,nco_pck_plc_nil,rec_dmn_nm,trv_tbl_gpr);
/* Turn off default filling behavior to enhance efficiency */
nco_set_fill(out_id,NC_NOFILL,&fll_md_old);
diff --git a/src/nco/ncflint.c b/src/nco/ncflint.c
index 46edf15..0af0b11 100644
--- a/src/nco/ncflint.c
+++ b/src/nco/ncflint.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncflint.c,v 1.288 2014/03/27 19:19:29 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncflint.c,v 1.290 2014/05/21 20:39:29 zender Exp $ */
/* ncflint -- netCDF file interpolator */
@@ -116,8 +116,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncflint.c,v 1.288 2014/03/27 19:19:29 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.288 $";
+ const char * const CVS_Id="$Id: ncflint.c,v 1.290 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.290 $";
const char * const opt_sht_lst="3467ACcD:d:Fg:G:hi:L:l:Oo:p:rRt:v:X:xw:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -559,7 +559,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id_1,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id_1,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -600,7 +600,7 @@ main(int argc,char **argv)
(void)nco_var_typ_trv(xtr_nbr,var,trv_tbl);
/* Define dimensions, extracted groups, variables, and attributes in output file */
- (void)nco_xtr_dfn(in_id_1,out_id,&cnk,dfl_lvl,gpe,md5,True,True,nco_pck_plc_nil,(char *)NULL,trv_tbl);
+ (void)nco_xtr_dfn(in_id_1,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,(char *)NULL,trv_tbl);
/* Catenate time-stamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
diff --git a/src/nco/ncks.c b/src/nco/ncks.c
index 465f6c3..d9680b4 100644
--- a/src/nco/ncks.c
+++ b/src/nco/ncks.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncks.c,v 1.711 2014/03/27 19:19:29 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncks.c,v 1.718 2014/05/21 20:39:29 zender Exp $ */
/* ncks -- netCDF Kitchen Sink */
@@ -107,6 +107,7 @@ main(int argc,char **argv)
nco_bool GET_PRG_INFO=False; /* [flg] Get compiled program information (e.g., libraries) */
nco_bool GET_LIST=False; /* [flg] Iterate file, print variables and exit */
nco_bool GRP_VAR_UNN=False; /* [flg] Select union of specified groups and variables */
+ nco_bool GRP_XTR_VAR_XCL=False; /* [flg] Extract matching groups, exclude matching variables */
nco_bool HISTORY_APPEND=True; /* Option h */
nco_bool HAVE_LIMITS=False; /* [flg] Are there user limits? (-d) */
nco_bool MSA_USR_RDR=False; /* [flg] Multi-Slab Algorithm returns hyperslabs in user-specified order */
@@ -130,6 +131,7 @@ main(int argc,char **argv)
nco_bool PRN_VAR_METADATA_TGL=False; /* [flg] Toggle print variable metadata Option m */
nco_bool PRN_VRB=False; /* [flg] Print data and metadata by default */
nco_bool PRN_NEW_FMT=False; /* [flg] Print using new print format */
+ nco_bool RETAIN_ALL_DIMS=False; /* [flg] Retain all dimensions */
nco_bool RAM_CREATE=False; /* [flg] Create file in RAM */
nco_bool RAM_OPEN=False; /* [flg] Open (netCDF3-only) file(s) in RAM */
nco_bool RM_RMT_FL_PST_PRC=True; /* Option R */
@@ -165,8 +167,8 @@ main(int argc,char **argv)
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncks.c,v 1.711 2014/03/27 19:19:29 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.711 $";
+ const char * const CVS_Id="$Id: ncks.c,v 1.718 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.718 $";
const char * const opt_sht_lst="34567aABb:CcD:d:FG:g:HhL:l:MmOo:Pp:qQrRs:uv:X:xz-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -259,6 +261,10 @@ main(int argc,char **argv)
{"no_clobber",no_argument,0,0},
{"no_dmn_var_nm",no_argument,0,0}, /* [flg] Print dimension/variable names */
{"no_nm_prn",no_argument,0,0}, /* [flg] Print dimension/variable names */
+ {"rad",no_argument,0,0}, /* [flg] Retain all dimensions */
+ {"retain_all_dimensions",no_argument,0,0}, /* [flg] Retain all dimensions */
+ {"orphan_dimensions",no_argument,0,0}, /* [flg] Retain all dimensions */
+ {"rph_dmn",no_argument,0,0}, /* [flg] Retain all dimensions */
{"ram_all",no_argument,0,0}, /* [flg] Open (netCDF3) and create file(s) in RAM */
{"create_ram",no_argument,0,0}, /* [flg] Create file in RAM */
{"open_ram",no_argument,0,0}, /* [flg] Open (netCDF3) file(s) in RAM */
@@ -274,6 +280,7 @@ main(int argc,char **argv)
{"nsx",no_argument,0,0}, /* [flg] Select intersection of specified groups and variables */
{"union",no_argument,0,0}, /* [flg] Select union of specified groups and variables */
{"unn",no_argument,0,0}, /* [flg] Select union of specified groups and variables */
+ {"grp_xtr_var_xcl",no_argument,0,0}, /* [flg] Extract matching groups, exclude matching variables */
{"version",no_argument,0,0},
{"vrs",no_argument,0,0},
{"jsn",no_argument,0,0}, /* [flg] Print JSON */
@@ -467,6 +474,7 @@ main(int argc,char **argv)
if(!strcmp(opt_crr,"no_blank") || !strcmp(opt_crr,"no-blank") || !strcmp(opt_crr,"noblank")) PRN_MSS_VAL_BLANK=!PRN_MSS_VAL_BLANK;
if(!strcmp(opt_crr,"no_clb") || !strcmp(opt_crr,"no-clobber") || !strcmp(opt_crr,"no_clobber") || !strcmp(opt_crr,"noclobber")) FORCE_NOCLOBBER=!FORCE_NOCLOBBER;
if(!strcmp(opt_crr,"no_dmn_var_nm") || !strcmp(opt_crr,"no_nm_prn")) PRN_DMN_VAR_NM=False;
+ if(!strcmp(opt_crr,"rad") || !strcmp(opt_crr,"retain_all_dimensions") || !strcmp(opt_crr,"orphan_dimensions") || !strcmp(opt_crr,"rph_dmn")) RETAIN_ALL_DIMS=True;
if(!strcmp(opt_crr,"ram_all") || !strcmp(opt_crr,"create_ram") || !strcmp(opt_crr,"diskless_all")) RAM_CREATE=True; /* [flg] Open (netCDF3) file(s) in RAM */
if(!strcmp(opt_crr,"ram_all") || !strcmp(opt_crr,"open_ram") || !strcmp(opt_crr,"diskless_all")) RAM_OPEN=True; /* [flg] Create file in RAM */
if(!strcmp(opt_crr,"secret") || !strcmp(opt_crr,"scr") || !strcmp(opt_crr,"shh")){
@@ -503,6 +511,10 @@ main(int argc,char **argv)
} /* endif "tst_udunits" */
if(!strcmp(opt_crr,"unn") || !strcmp(opt_crr,"union")) GRP_VAR_UNN=True;
if(!strcmp(opt_crr,"nsx") || !strcmp(opt_crr,"intersection")) GRP_VAR_UNN=False;
+ if(!strcmp(opt_crr,"grp_xtr_var_xcl")){
+ EXCLUDE_INPUT_LIST=True;
+ GRP_XTR_VAR_XCL=True;
+ } /* endif "grp_xtr_var_xcl" */
if(!strcmp(opt_crr,"vrs") || !strcmp(opt_crr,"version")){
(void)nco_vrs_prn(CVS_Id,CVS_Revision);
nco_exit(EXIT_SUCCESS);
@@ -681,7 +693,7 @@ main(int argc,char **argv)
rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
/* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list*/
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,GRP_XTR_VAR_XCL,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -775,11 +787,10 @@ main(int argc,char **argv)
/* Create structure with all chunking information */
if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_sz_byt,cnk_sz_scl,&cnk);
- if(nco_dbg_lvl >= nco_dbg_dev) (void)nco_prn_var(in_id,trv_tbl);
- if(nco_dbg_lvl >= nco_dbg_dev) (void)nco_prn_var(out_id,trv_tbl);
+ if(nco_dbg_lvl == nco_dbg_old) (void)nco_prn_var(in_id,trv_tbl);
/* Define extracted groups, variables, and attributes in output file */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,PRN_GLB_METADATA,PRN_VAR_METADATA,nco_pck_plc_nil,rec_dmn_nm,trv_tbl);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,PRN_GLB_METADATA,PRN_VAR_METADATA,RETAIN_ALL_DIMS,nco_pck_plc_nil,rec_dmn_nm,trv_tbl);
/* Catenate timestamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
@@ -840,6 +851,7 @@ main(int argc,char **argv)
if((prn_flg.cdl || prn_flg.xml) && nco_dbg_lvl >= nco_dbg_std) prn_flg.nfo_xtr=True; else prn_flg.nfo_xtr=False;
prn_flg.new_fmt=(PRN_CDL || PRN_JSN || PRN_SRM || PRN_XML || PRN_NEW_FMT);
prn_flg.hdn=PRN_HDN;
+ prn_flg.rad=RETAIN_ALL_DIMS;
/* CDL must print filename stub */
if(prn_flg.cdl || prn_flg.xml){
fl_in_dpl=strdup(fl_in);
diff --git a/src/nco/nco.h b/src/nco/nco.h
index d40a072..6001ff9 100644
--- a/src/nco/nco.h
+++ b/src/nco/nco.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco.h,v 1.506 2014/03/26 18:55:58 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco.h,v 1.510 2014/05/27 03:26:18 zender Exp $ */
/* Purpose: netCDF Operator (NCO) definitions */
@@ -12,6 +12,8 @@
#ifndef NCO_H /* Contents have not yet been inserted in current source file */
#define NCO_H
+#define DEBUG_LEAKS
+
/* Standard header files */
#include <stdio.h> /* stderr, FILE, NULL, printf */
@@ -136,6 +138,16 @@ extern "C" {
/* Argument to strtol() and strtoul() indicating base-10 conversions */
#define NCO_SNG_CNV_BASE10 10
+ /* netCDF 4.3.2 (201404) implements a configure-time constant called DEFAULT_CHUNK_SIZE = 4194304 = 4 MB
+ This is a good size for HPC systems with MB-scale blocksizes
+ Token is not in netcdf.h, and NCO's equivalent need not match netCDF's
+ NCO uses NCO token NCO_CNK_SZ_BYT_DFL and default algorithm when user specifies any chunking option
+ NCO uses netCDF token DEFAULT_CHUNK_SIZE and default algorithm when user specifies no chunking option */
+#define NCO_CNK_SZ_BYT_DFL 4194304
+
+ /* Linux default blocksize is 4096 B---a good chunk size for 1-D record dimension variables */
+#define NCO_CNK_SZ_BYT_R1D_DFL 4096
+
/* netCDF provides no guidance on maximum nesting of groups */
#define NCO_MAX_GRP_DEPTH 10
@@ -385,12 +397,11 @@ extern "C" {
/* NB: Use NCO_NOERR and NCO_ERR as return codes to other functions, not to shell (e.g., Bash, Csh)
Shell exit codes (where 0 indicates success) are traditionally opposite C exit codes (where 0 indicates failure) */
-/* Internal NCO return code indicating success */
+/* Internal NCO function return code indicating success */
#define NCO_NOERR 1
-/* Internal NCO return code indicating failure */
+/* Internal NCO function return code indicating failure */
#define NCO_ERR 0
-
/* UDUnits return code indicating success */
#define UDUNITS_NOERR 0
@@ -438,7 +449,8 @@ extern "C" {
nco_dbg_vrb, /* 10 [enm] Verbose, print everything possible */
nco_dbg_old, /* 11 [enm] Old debugging blocks not used anymore */
nco_dbg_dev, /* 12 [enm] NCO developer information; only useful for debugging */
- nco_dbg_nbr /* 13 [enm] Number of debugging types (equals last enumerated value) */
+ nco_dbg_sup, /* 13 [enm] NCO extra developer information not usually used (debug memory leaks) */
+ nco_dbg_nbr /* 14 [enm] Number of debugging types (equals last enumerated value) */
}; /* end nco_dbg_typ_enm */
enum nco_op_typ{ /* [enm] Operation type */
@@ -736,6 +748,7 @@ extern "C" {
nco_bool jsn; /* [flg] Print JSON */
nco_bool xml; /* [flg] Print XML (NcML) */
nco_bool hdn; /* [flg] Print hidden attributes */
+ nco_bool rad; /* [flg] Retain all dimensions */
nco_bool xml_lcn; /* [flg] Print XML location tag */
nco_bool nfo_xtr; /* [flg] Print extra information in CDL/XML mode */
nco_bool new_fmt; /* [flg] Print in new format */
diff --git a/src/nco/nco_att_utl.c b/src/nco/nco_att_utl.c
index 5089fb8..00038e5 100644
--- a/src/nco/nco_att_utl.c
+++ b/src/nco/nco_att_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_att_utl.c,v 1.171 2014/01/09 00:08:43 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_att_utl.c,v 1.173 2014/05/27 02:04:18 zender Exp $ */
/* Purpose: Attribute utilities */
@@ -8,7 +8,10 @@
#include "nco_att_utl.h" /* Attribute utilities */
-/* Microsoft standard C library lacks standard definitions for strtoll(), strtoull() */
+/* Microsoft standard C library lacks standard definitions for strtoll(), strtoull()
+ 20140522 fxm: strtoll() and strtull() currently only used in nco_att_utl.c
+ Yes Microsoft replacement functions are generic
+ Should dangling definitions be placed in other header file, e.g., nco_rth_flt.h? */
#ifdef _MSC_VER
# define strtoull _strtoui64
# define strtoll _strtoi64
@@ -371,7 +374,7 @@ nco_att_cpy /* [fnc] Copy attributes from input netCDF file to output netCDF fi
if(nco_prg_id == ncrcat || nco_prg_id == ncecat){
/* ...then risk exists that packing attributes in first file do not match subsequent files... */
static short FIRST_WARNING=True;
- if(FIRST_WARNING) (void)fprintf(stderr,"%s: INFO/WARNING Multi-file concatenator encountered packing attribute %s for variable %s. NCO copies the packing attributes from the first file to the output file. The packing attributes from the remaining files must match exactly those in the first file or the data from the subsequent files will not unpack correctly. Be sure all input files share the same packing attributes. If in doubt, unpack (with ncpdq -U) the input files, then concatenate [...]
+ if(FIRST_WARNING) (void)fprintf(stderr,"%s: INFO/WARNING Multi-file concatenator encountered packing attribute %s for variable %s. NCO copies the packing attributes from the first file to the output file. The packing attributes from the remaining files must match exactly those in the first file or data from subsequent files will not unpack correctly. Be sure all input files share the same packing attributes. If in doubt, unpack (with ncpdq -U) the input files, then concatenate them, t [...]
FIRST_WARNING=False;
} /* endif ncrcat or ncecat */
}else{ /* ...do not copy packing attributes... */
diff --git a/src/nco/nco_aux.c b/src/nco/nco_aux.c
index b3b71cd..705449a 100644
--- a/src/nco/nco_aux.c
+++ b/src/nco/nco_aux.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.c,v 1.80 2014/02/14 05:22:16 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.c,v 1.81 2014/05/27 02:04:18 zender Exp $ */
/* Copyright (C) 1995--2014 Charlie Zender
License: GNU General Public License (GPL) Version 3
@@ -38,7 +38,7 @@ nco_find_lat_lon
const char fnc_nm[]="nco_find_lat_lon()";
char var_nm[NC_MAX_NAME];
- char value[NC_MAX_NAME];
+ char att_val[NC_MAX_NAME];
int idx;
int nvars=0;
@@ -48,12 +48,12 @@ nco_find_lat_lon
int var_att_nbr; /* [nbr] Number of attributes */
int var_dmn_nbr; /* [nbr] Number of dimensions */
- long lenp;
+ long att_lng;
nc_type var_typ; /* [enm] variable type */
/* Make sure CF tag exists. Currently require CF-1.0 value */
- if(NCO_GET_ATT_CHAR(nc_id,NC_GLOBAL,"Conventions",value) || !strstr(value,"CF-1.")){
+ if(NCO_GET_ATT_CHAR(nc_id,NC_GLOBAL,"Conventions",att_val) || !strstr(att_val,"CF-1.")){
if(nco_dbg_lvl_get() >= nco_dbg_dev)
(void)fprintf(stderr,"%s: WARNING %s reports file \"Convention\" attribute is missing or is present but not of the form \"CF-1.X\". Auxiliary coordinate support (i.e., the -X option) cannot be expected to behave well file does not support CF-1.X metadata conventions. Continuing anyway...\n",nco_prg_nm_get(),fnc_nm);
} /* !CF */
@@ -64,20 +64,20 @@ nco_find_lat_lon
/* For each variable, see if standard name is latitude or longitude */
for(idx=0;idx<nvars && crd_nbr<2;idx++){
nco_inq_var(nc_id,idx,var_nm,&var_typ,&var_dmn_nbr,var_dimid,&var_att_nbr);
- lenp=0;
- if(!nco_inq_attlen_flg(nc_id,idx,"standard_name",&lenp)){
- NCO_GET_ATT_CHAR(nc_id,idx,"standard_name",value);
- value[lenp]='\0';
- if(!strcmp(value,"latitude")){
+ att_lng=0;
+ if(!nco_inq_attlen_flg(nc_id,idx,"standard_name",&att_lng)){
+ NCO_GET_ATT_CHAR(nc_id,idx,"standard_name",att_val);
+ att_val[att_lng]='\0';
+ if(!strcmp(att_val,"latitude")){
strcpy(var_nm_lat,var_nm);
*lat_id=idx;
/* Get units; assume same for both lat and lon */
- rcd=nco_inq_attlen(nc_id,idx,"units",&lenp);
+ rcd=nco_inq_attlen(nc_id,idx,"units",&att_lng);
if(rcd != NC_NOERR) nco_err_exit(rcd,"nco_find_lat_lon() reports CF convention requires \"latitude\" to have units attribute\n");
- *units=(char *)nco_malloc((lenp+1L)*sizeof(char *));
+ *units=(char *)nco_malloc((att_lng+1L)*sizeof(char));
NCO_GET_ATT_CHAR(nc_id,idx,"units",*units);
- units[lenp]='\0';
+ (*units)[att_lng]='\0';
if(var_dmn_nbr > 1) (void)fprintf(stderr,"%s: WARNING %s reports latitude variable %s has %d dimensions. NCO only supports hyperslabbing of auxiliary coordinate variables with a single dimension. Continuing with unpredictable results...\n",nco_prg_nm_get(),fnc_nm,var_nm,var_dmn_nbr);
@@ -86,7 +86,7 @@ nco_find_lat_lon
crd_nbr++;
} /* endif latitude */
- if(!strcmp(value,"longitude")){
+ if(!strcmp(att_val,"longitude")){
strcpy(var_nm_lon,var_nm);
*lon_id=idx;
crd_nbr++;
@@ -551,7 +551,7 @@ nco_bool
nco_find_lat_lon_trv
(const int nc_id, /* I [ID] netCDF file ID */
const trv_sct * const var_trv, /* I [sct] Variable object that contains "standard_name" attribute */
- const char * const attr_val, /* I [sng] Attribute value to find ( "latitude" or "longitude" ) */
+ const char * const att_val_trg, /* I [sng] Attribute value to find ( "latitude" or "longitude" ) */
char **var_nm_fll, /* I/O [sng] Full name of variable that has "latitude" or "longitude" attributes */
int *dmn_id, /* I/O [id] Dimension ID of the diension of "latitude" and "longitude" */
nc_type *crd_typ, /* I/O [enm] netCDF type of both "latitude" and "longitude" */
@@ -598,27 +598,25 @@ nco_find_lat_lon_trv
(void)nco_inq_attname(grp_id,var_id,idx_att,att_nm);
/* Skip attribute if not "standard_name" */
- if(strcmp(att_nm,"standard_name") != 0){
- continue;
- }
+ if(strcmp(att_nm,"standard_name")) continue;
- char value[NC_MAX_NAME+1];
+ char att_val[NC_MAX_NAME+1];
- long lenp;
+ long att_lng;
- (void)nco_inq_attlen(grp_id,var_id,"standard_name",&lenp);
+ (void)nco_inq_attlen(grp_id,var_id,"standard_name",&att_lng);
- NCO_GET_ATT_CHAR(grp_id,var_id,"standard_name",value);
- value[lenp]='\0';
+ NCO_GET_ATT_CHAR(grp_id,var_id,"standard_name",att_val);
+ att_val[att_lng]='\0';
/* Match parameter name to find ( "latitude" or "longitude" ) */
- if(strcmp(value,attr_val) == 0){
+ if(strcmp(att_val,att_val_trg) == 0){
/* Export full name */
*var_nm_fll=(char *)strdup(var_trv->nm_fll);
/* Get units; assume same for both lat and lon */
- int rcd=nco_inq_attlen_flg(grp_id,var_id,"units",&lenp);
+ int rcd=nco_inq_attlen_flg(grp_id,var_id,"units",&att_lng);
if(rcd != NC_NOERR){
if(nco_dbg_lvl_get() >= nco_dbg_var){
(void)fprintf(stdout,"nco_find_lat_lon() reports CF convention requires \"latitude\" to have units attribute\n");
@@ -626,7 +624,7 @@ nco_find_lat_lon_trv
return False;
}
NCO_GET_ATT_CHAR(grp_id,var_id,"units",units);
- units[lenp]='\0';
+ units[att_lng]='\0';
if(var_dmn_nbr > 1) (void)fprintf(stderr,"%s: WARNING %s reports latitude variable %s has %d dimensions. NCO only supports hyperslabbing of auxiliary coordinate variables with a single dimension. Continuing with unpredictable results...\n",nco_prg_nm_get(),fnc_nm,var_nm,var_dmn_nbr);
diff --git a/src/nco/nco_aux.h b/src/nco/nco_aux.h
index 57a37f1..b808840 100644
--- a/src/nco/nco_aux.h
+++ b/src/nco/nco_aux.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.h,v 1.33 2014/01/13 03:29:53 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.h,v 1.34 2014/05/27 02:04:18 zender Exp $ */
/* Purpose: Sub-set cell-based grids using auxiliary coordinate variable */
@@ -79,7 +79,7 @@ nco_bool
nco_find_lat_lon_trv
(const int nc_id, /* I [ID] netCDF file ID */
const trv_sct * const var_trv, /* I [sct] Variable object that contains "standard_name" attribute */
- const char * const attr_val, /* I [sng] Attribute value to find ( "latitude" or "longitude" ) */
+ const char * const att_val_trg, /* I [sng] Attribute value to find ( "latitude" or "longitude" ) */
char **var_nm_fll, /* I/O [sng] Full name of variable that has "latitude" or "longitude" attributes */
int *dmn_id, /* I/O [id] Dimension ID of the diension of "latitude" and "longitude" */
nc_type *crd_typ, /* I/O [enm] netCDF type of both "latitude" and "longitude" */
diff --git a/src/nco/nco_cnk.c b/src/nco/nco_cnk.c
index 1096cec..a233dd7 100644
--- a/src/nco/nco_cnk.c
+++ b/src/nco/nco_cnk.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnk.c,v 1.121 2014/03/21 03:11:18 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_cnk.c,v 1.122 2014/05/20 05:53:20 zender Exp $ */
/* Purpose: NCO utilities for chunking */
@@ -168,8 +168,6 @@ nco_cnk_ini /* [fnc] Create structure with all chunking information */
/* Discover blocksize if possible */
fl_sys_blk_sz=nco_fl_blocksize(fl_out);
- /* Linux default blocksize is 4096 B */
-#define NCO_CNK_SZ_BYT_DFL 4096
if(cnk_sz_byt > 0ULL){
/* Use user-specified chunk size if available */
cnk->cnk_sz_byt=cnk_sz_byt;
@@ -759,7 +757,18 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
/* Purpose: Use chunking map and policy to determine chunksize list
Adapted from nco_cnk_sz_set() to GTT:
1) Instead of loop for all variables, this functions chunks one variable
- 2) In dimension loop, dimension object is obtained from variable object */
+ 2) In dimension loop, dimension object is obtained from variable object
+
+ Unidata defaults set in libsrc4/nc4hdf.c, nc4var.c
+
+ netCDF 4.3.2 and later:
+ DEFAULT_CHUNK_SIZE=4 MB
+ Default chunk size for 1-D record variables is DEFAULT_CHUNK_SIZE/type_size
+ = 1048576 for sizeof(type)=4
+
+ h5dump prints chunking and compression information for netCDF4/HDF5 files:
+ h5dump -H -p ~/nco/data/hdn.nc
+ Grep for "COMPRESSION" */
const char fnc_nm[]="nco_cnk_sz_set_trv()"; /* [sng] Function name */
@@ -778,10 +787,10 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
int srg_typ; /* [enm] Storage type */
int var_id_in; /* [ID] Variable ID in input file */
int var_id_out; /* [ID] Variable ID in output file */
- int var_dimid[NC_MAX_VAR_DIMS]; /* [lst] Dimension IDs */
nc_type var_typ_dsk; /* [nbr] Variable type */
+ nco_bool *flg_mch; /* [flg] Name match (absolute or relative) between chunking structure 'cnk_sct' and dimension 'dmn_cmn' */
nco_bool flg_usr_rqs; /* [flg] User requested checking */
nco_bool is_rec_var; /* [flg] Record variable */
nco_bool is_chk_var; /* [flg] Check-summed variable */
@@ -789,7 +798,6 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
nco_bool is_chunked; /* [flg] Chunked variable */
nco_bool is_xpl_cnk; /* [flg] Explicitly chunked variable */
nco_bool must_be_chunked; /* [flg] Variable must be chunked */
- nco_bool flg_mch[NC_MAX_VAR_DIMS]; /* [flg] Name match (absolute or relative) between chunking structure 'cnk_sct' and dimension 'dmn_cmn' */
size_t *cnk_sz=NULL; /* [nbr] Chunksize list */
size_t cnk_sz_dfl; /* [nbr] Chunksize default */
@@ -858,7 +866,7 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
(void)nco_inq_varid(grp_id_in,var_nm,&var_id_in);
/* Get type and number of dimensions for variable */
- (void)nco_inq_var(grp_id_out,var_id_out,(char *)NULL,&var_typ_dsk,&dmn_nbr,var_dimid,(int *)NULL);
+ (void)nco_inq_var(grp_id_out,var_id_out,(char *)NULL,&var_typ_dsk,&dmn_nbr,(int *)NULL,(int *)NULL);
typ_sz=nco_typ_lng(var_typ_dsk);
if(dmn_nbr == 0){
@@ -967,6 +975,8 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
if(dmn_cmn[dmn_idx].NON_HYP_DMN){
/* When not hyperslabbed, use input record dimension size ... */
cnk_sz[dmn_idx]=dmn_cmn[dmn_idx].sz;
+ /* 20140518: As of netCDF 4.3.2, employ smarter defaults for record dimension */
+ if(dmn_nbr == 1) cnk_sz[dmn_idx]=NCO_CNK_SZ_BYT_R1D_DFL/typ_sz;
}else{ /* !NON_HYP_DMN */
/* ... and when hyperslabbed, use user-specified count */
cnk_sz[dmn_idx]=dmn_cmn[dmn_idx].dmn_cnt;
@@ -1084,6 +1094,7 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
cnk_xpl_override: /* end goto */
/* Override "reasonable" defaults with explicitly set per-dimension sizes, if any */
+ flg_mch=(nco_bool *)nco_malloc(dmn_nbr*sizeof(nco_bool));
for(dmn_idx=0;dmn_idx<dmn_nbr;dmn_idx++){
/* Initialize to false then override */
@@ -1126,6 +1137,7 @@ cnk_xpl_override: /* end goto */
} /* cnk_nm != dmn_nm */
} /* end loop over dimensions */
} /* end loop over cnk */
+ if(flg_mch) flg_mch=(nco_bool *)nco_free(flg_mch);
/* Status: Previous block implemented per-dimension checks on user-requested chunksizes only
Block below implements similar final safety check for ALL dimensions and ALL chunking maps
@@ -1144,7 +1156,7 @@ cnk_xpl_override: /* end goto */
if(nco_dbg_lvl_get() >= nco_dbg_var && nco_dbg_lvl_get() != nco_dbg_dev){
/* Dimensions and chunksizes used by variable in output file */
(void)fprintf(stdout,"idx dmn_nm\tdmn_sz\tcnk_sz:\n");
- for(dmn_idx=0;dmn_idx<dmn_nbr;dmn_idx++) (void)fprintf(stdout,"%2d %s\t%lu\t%lu\n",dmn_idx,dmn_cmn[dmn_idx].nm_fll,(unsigned long)dmn_cmn[dmn_idx].sz,(unsigned long)cnk_sz[dmn_idx]);
+ for(dmn_idx=0;dmn_idx<dmn_nbr;dmn_idx++) (void)fprintf(stdout,"%2d %s \t%lu\t%lu\n",dmn_idx,dmn_cmn[dmn_idx].nm_fll,(unsigned long)dmn_cmn[dmn_idx].sz,(unsigned long)cnk_sz[dmn_idx]);
} /* endif dbg */
/* Set storage (chunked or contiguous) for this variable */
diff --git a/src/nco/nco_ctl.c b/src/nco/nco_ctl.c
index 5f0681f..96a74a5 100644
--- a/src/nco/nco_ctl.c
+++ b/src/nco/nco_ctl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_ctl.c,v 1.466 2014/04/02 05:40:24 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_ctl.c,v 1.471 2014/05/27 22:13:54 zender Exp $ */
/* Purpose: Program flow control functions */
@@ -799,7 +799,7 @@ nco_nmn_get(void) /* [fnc] Return mnemonic that describes current NCO version */
{
/* Purpose: Return mnemonic describing current NCO version
Always Include terminal \n so mnemonic does not dangle */
- return "ESDSWG. DC. Bombay. Gut. Dislodge. Did we really say those words? Fantasies.\n";
+ return "Staycation: New records set\n";
} /* end nco_nmn_get() */
char * /* O [sng] nm_in stripped of any path (i.e., program name stub) */
@@ -922,7 +922,7 @@ nco_usg_prn(void)
opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_crd] [--fl_fmt fmt] [-h] [--hdf] [--hdr_pad nbr] [-i var,val] [-L lvl] [-l path] [--msa] [--no_tmp_fl] [-O] [-o out.nc] [-p path] [-R] [-r] [--ram_all] [-t thr_nbr] [-v ...] [-X box] [-x] [-w wgt_1[,wgt_2]] in_1.nc in_2.nc [out.nc]\n");
break;
case ncks:
- opt_sng=(char *)strdup("[-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b fl_bnr] [--bfr sz] [-C] [-c] [--cdl] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_dmn dim] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-H] [-h] [--hdn] [--hdr_pad nbr] [-L lvl] [-l path] [-M] [-m] [--md5_dgs] [--md5_wrt] [--mk_rec_dmn dim] [--msa] [--no_blank] [--no_tmp_fl] [-O] [-o out.nc] [-P] [-p path] [-Q] [-q] [-R] [-r] [--ram_all] [-s format] [-u [...]
+ opt_sng=(char *)strdup("[-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b fl_bnr] [--bfr sz] [-C] [-c] [--cdl] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_dmn dim] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-H] [-h] [--hdn] [--hdr_pad nbr] [-L lvl] [-l path] [-M] [-m] [--md5_dgs] [--md5_wrt] [--mk_rec_dmn dim] [--msa] [--no_blank] [--no_tmp_fl] [-O] [-o out.nc] [-P] [-p path] [-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s for [...]
break;
case ncpdq:
opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [-a ...] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-h] [--hdf] [--hdr_pad nbr] [-L lvl] [-l path] [-M pck_map] [--mrd] [--msa] [--no_tmp_fl] [-O] [-o out.nc] [-P pck_plc] [-p path] [-R] [-r] [--ram_all] [-t thr_nbr] [--unn] [-U] [-v ...] [-X box] [-x] in.nc [out.nc]\n");
@@ -1060,6 +1060,7 @@ nco_usg_prn(void)
if(strstr(opt_sng,"[-q]")) (void)fprintf(stdout,"-q, --quiet\t\tTurn off all printing to screen\n");
if(strstr(opt_sng,"[-R]")) (void)fprintf(stdout,"-R, --rtn, --retain\tRetain remotely-retrieved files after use\n");
if(strstr(opt_sng,"[-r]")) (void)fprintf(stdout,"-r, --revision, --vrs, --version\tCompile-time configuration and/or program version\n");
+ if(strstr(opt_sng,"--rad")) (void)fprintf(stdout," --orphan, --rph_dmn\tRetain or print all (including orphaned) dimensions\n");
if(strstr(opt_sng,"--ram_all")) (void)fprintf(stdout," --ram_all, --diskless_all\tOpen netCDF3 files and create output files in RAM\n");
if(strstr(opt_sng,"--rec_apn")) (void)fprintf(stdout," --rec_apn, --record_append\tAppend records directly to output file\n");
if(strstr(opt_sng,"[-s")){
diff --git a/src/nco/nco_dmn_utl.c b/src/nco/nco_dmn_utl.c
index 1718fa1..2dbe76a 100644
--- a/src/nco/nco_dmn_utl.c
+++ b/src/nco/nco_dmn_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_dmn_utl.c,v 1.68 2014/01/02 22:56:39 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_dmn_utl.c,v 1.69 2014/05/10 05:33:52 pvicente Exp $ */
/* Purpose: Dimension utilities */
@@ -90,6 +90,7 @@ nco_dmn_fll /* [fnc] Create and return completed dmn_sct */
dmn=(dmn_sct *)nco_malloc(sizeof(dmn_sct));
dmn->nm=(char *)strdup(dmn_nm);
+ dmn->nm_fll=NULL;
dmn->id=dmn_id;
dmn->nc_id=nc_id;
dmn->xrf=NULL;
diff --git a/src/nco/nco_fl_utl.c b/src/nco/nco_fl_utl.c
index 11f1428..7a108f9 100644
--- a/src/nco/nco_fl_utl.c
+++ b/src/nco/nco_fl_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_fl_utl.c,v 1.239 2014/02/20 18:25:45 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_fl_utl.c,v 1.240 2014/05/22 15:40:34 zender Exp $ */
/* Purpose: File manipulation */
@@ -1375,7 +1375,7 @@ nco_fl_open /* [fnc] Open file using appropriate buffer size hints and verbosity
rcd+=nco_inq_format_extended(*nc_id,&fl_fmt_xtn_crr,&mode);
if(fl_fmt_xtn_prv != nco_fmt_xtn_nil){
/* Complain if set value of extended type does not match current type */
- if(fl_fmt_xtn_prv != fl_fmt_xtn_crr) (void)fprintf(stderr,"%s: INFO %s reports current extended filetype = %s does not equal previous extended filetype = %s. This is expected when NCO is instructed to convert filetypes, i.e., to read from one type and write to another. However, it could also indicate an unexpected change in input dataset type that the user should be cognizant of.\n",nco_prg_nm_get(),fnc_nm,nco_fmt_xtn_sng(fl_fmt_xtn_crr),nco_fmt_xtn_sng(fl_fmt_xtn_prv));
+ if(fl_fmt_xtn_prv != fl_fmt_xtn_crr) (void)fprintf(stderr,"%s: INFO %s reports current extended filetype = %s does not equal previous extended filetype = %s. This is expected when NCO is instructed to convert filetypes, i.e., to read from one type and write to another. It is also expected when multi-file operators receive files known to be of different types. However, it could also indicate an unexpected change in input dataset type of which the user should be cognizant.\n",nco_prg_n [...]
}else{
/* Set undefined extended file type to actual extended filetype */
nco_fmt_xtn_set(fl_fmt_xtn_crr);
diff --git a/src/nco/nco_grp_trv.c b/src/nco/nco_grp_trv.c
index 08a023a..1fadda2 100644
--- a/src/nco/nco_grp_trv.c
+++ b/src/nco/nco_grp_trv.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.c,v 1.289 2014/03/25 22:14:11 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.c,v 1.297 2014/05/21 20:39:29 zender Exp $ */
/* Purpose: netCDF4 traversal storage */
@@ -43,6 +43,15 @@ trv_tbl_free /* [fnc] GTT free memory */
(trv_tbl_sct *tbl) /* I [sct] Traversal table */
{
+ const char fnc_nm[]="trv_tbl_free()"; /* [sng] Function name */
+
+#ifdef DEBUG_LEAKS
+ int crt_counter=0;
+#endif
+
+ /* Hash Table */
+ nco_trv_hsh_del(tbl);
+
/* Object (group/variable) list */
for(unsigned idx=0;idx<tbl->nbr;idx++){
tbl->lst[idx].nm_fll=(char *)nco_free(tbl->lst[idx].nm_fll);
@@ -64,13 +73,10 @@ trv_tbl_free /* [fnc] GTT free memory */
tbl->lst[idx].var_dmn[dmn_idx].grp_nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].grp_nm_fll);
int nbr_lat_crd=tbl->lst[idx].var_dmn[dmn_idx].nbr_lat_crd;
- for(int idx_crd=0;idx_crd<nbr_lat_crd;idx_crd++){
- tbl->lst[idx].var_dmn[dmn_idx].lat_crd[idx_crd].nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].lat_crd[idx_crd].nm_fll);
- }
+ for(int idx_crd=0;idx_crd<nbr_lat_crd;idx_crd++) tbl->lst[idx].var_dmn[dmn_idx].lat_crd[idx_crd].nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].lat_crd[idx_crd].nm_fll);
+
int nbr_lon_crd=tbl->lst[idx].var_dmn[dmn_idx].nbr_lon_crd;
- for(int idx_crd=0;idx_crd<nbr_lon_crd;idx_crd++){
- tbl->lst[idx].var_dmn[dmn_idx].lon_crd[idx_crd].nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].lon_crd[idx_crd].nm_fll);
- }
+ for(int idx_crd=0;idx_crd<nbr_lon_crd;idx_crd++) tbl->lst[idx].var_dmn[dmn_idx].lon_crd[idx_crd].nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].lon_crd[idx_crd].nm_fll);
/* Coordinate structure */
if(tbl->lst[idx].var_dmn[dmn_idx].crd){
@@ -84,11 +90,38 @@ trv_tbl_free /* [fnc] GTT free memory */
for(int lmt_idx=0;lmt_idx<tbl->lst[idx].var_dmn[dmn_idx].crd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
tbl->lst[idx].var_dmn[dmn_idx].crd->lmt_msa.lmt_dmn[lmt_idx]=nco_lmt_free(tbl->lst[idx].var_dmn[dmn_idx].crd->lmt_msa.lmt_dmn[lmt_idx]);
- }
+ }
+
tbl->lst[idx].var_dmn[dmn_idx].crd->lmt_msa.lmt_dmn=(lmt_sct **)nco_free(tbl->lst[idx].var_dmn[dmn_idx].crd->lmt_msa.lmt_dmn);
+
tbl->lst[idx].var_dmn[dmn_idx].crd=(crd_sct *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].crd);
+
+#ifdef DEBUG_LEAKS
+ crt_counter++;
+#endif
+
} /* Coordinate structure */
+ /* Pointer to non-coordinate dimension */
+ else if(tbl->lst[idx].var_dmn[dmn_idx].ncd){
+
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->grp_nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->grp_nm_fll);
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->nm_fll=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->nm_fll);
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->nm=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->nm);
+
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.dmn_nm=(char *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.dmn_nm);
+
+ for(int lmt_idx=0;lmt_idx<tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.lmt_dmn[lmt_idx]=nco_lmt_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.lmt_dmn[lmt_idx]);
+ }
+
+ tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.lmt_dmn=(lmt_sct **)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd->lmt_msa.lmt_dmn);
+
+ tbl->lst[idx].var_dmn[dmn_idx].ncd=(dmn_trv_sct *)nco_free(tbl->lst[idx].var_dmn[dmn_idx].ncd);
+
+ }
+
+
} /* Dimensions */
tbl->lst[idx].var_dmn=(var_dmn_sct *)nco_free(tbl->lst[idx].var_dmn);
@@ -119,11 +152,13 @@ trv_tbl_free /* [fnc] GTT free memory */
tbl->lst_dmn[dmn_idx].crd[crd_idx]->dmn_nm_fll=(char *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->dmn_nm_fll);
tbl->lst_dmn[dmn_idx].crd[crd_idx]->crd_grp_nm_fll=(char *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->crd_grp_nm_fll);
tbl->lst_dmn[dmn_idx].crd[crd_idx]->dmn_grp_nm_fll=(char *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->dmn_grp_nm_fll);
+ tbl->lst_dmn[dmn_idx].crd[crd_idx]->nm=(char *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->nm);
tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.dmn_nm=(char *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.dmn_nm);
- for(int lmt_idx=0;lmt_idx<tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.lmt_dmn_nbr;lmt_idx++)
+ for(int lmt_idx=0;lmt_idx<tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.lmt_dmn_nbr;lmt_idx++){
tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.lmt_dmn[lmt_idx]=nco_lmt_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]->lmt_msa.lmt_dmn[lmt_idx]);
+ }
tbl->lst_dmn[dmn_idx].crd[crd_idx]=(crd_sct *)nco_free(tbl->lst_dmn[dmn_idx].crd[crd_idx]);
} /* Coordinate structures */
@@ -142,13 +177,9 @@ trv_tbl_free /* [fnc] GTT free memory */
for(int idx_nsm=0;idx_nsm<tbl->nsm_nbr;idx_nsm++){
tbl->nsm[idx_nsm].grp_nm_fll_prn=(char *)nco_free(tbl->nsm[idx_nsm].grp_nm_fll_prn);
- for(int idx=0;idx<tbl->nsm[idx_nsm].tpl_nbr;idx++){
- tbl->nsm[idx_nsm].tpl_mbr_nm[idx]=(char *)nco_free(tbl->nsm[idx_nsm].tpl_mbr_nm[idx]);
- }
+ for(int idx=0;idx<tbl->nsm[idx_nsm].tpl_nbr;idx++) tbl->nsm[idx_nsm].tpl_mbr_nm[idx]=(char *)nco_free(tbl->nsm[idx_nsm].tpl_mbr_nm[idx]);
- for(int idx=0;idx<tbl->nsm[idx_nsm].skp_nbr;idx++){
- tbl->nsm[idx_nsm].skp_nm_fll[idx]=(char *)nco_free(tbl->nsm[idx_nsm].skp_nm_fll[idx]);
- }
+ for(int idx=0;idx<tbl->nsm[idx_nsm].skp_nbr;idx++) tbl->nsm[idx_nsm].skp_nm_fll[idx]=(char *)nco_free(tbl->nsm[idx_nsm].skp_nm_fll[idx]);
tbl->nsm[idx_nsm].mbr=(nsm_grp_sct*)nco_free(tbl->nsm[idx_nsm].mbr);
} /* Ensembles */
@@ -156,6 +187,11 @@ trv_tbl_free /* [fnc] GTT free memory */
tbl->nsm_sfx=(char *)nco_free(tbl->nsm_sfx);
tbl=(trv_tbl_sct *)nco_free(tbl);
+
+#ifdef DEBUG_LEAKS
+ if(nco_dbg_lvl_get() >= nco_dbg_sup)(void)fprintf(stdout,"%s: DEBUG %s %d crd",nco_prg_nm_get(),fnc_nm,crt_counter);
+#endif
+
} /* end trv_tbl_free() */
void
@@ -297,12 +333,9 @@ trv_tbl_grp_nm_fll /* [fnc] Return group object from full nam
{
/* Purpose: Return group object with given full name */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_grp &&
- strcmp(grp_nm_fll,trv_tbl->lst[idx_tbl].nm_fll) == 0){
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++)
+ if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_grp && !strcmp(grp_nm_fll,trv_tbl->lst[idx_tbl].nm_fll))
return &trv_tbl->lst[idx_tbl];
- }
- }
return NULL;
} /* trv_tbl_grp_nm_fll() */
@@ -332,11 +365,9 @@ trv_tbl_mrk_grp_xtr /* [fnc] Mark extraction flag in table for
const nco_bool flg_xtr, /* I [flg] Flag (True or False) */
trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
{
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(strcmp(grp_nm_fll,trv_tbl->lst[idx_tbl].nm_fll) == 0){
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++)
+ if(!strcmp(grp_nm_fll,trv_tbl->lst[idx_tbl].nm_fll))
trv_tbl->lst[idx_tbl].flg_xtr=flg_xtr;
- }
- }
return;
} /* end trv_tbl_mrk_grp_xtr() */
@@ -369,12 +400,10 @@ trv_tbl_prn_xtr /* [fnc] Print extraction flag of travers
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++)
if(trv_tbl->lst[idx_tbl].flg_xtr) nbr_flg++;
- (void)fprintf(stdout,"%s: INFO %s reports <%d> objects with extraction flag (flg_xtr) set:\n",nco_prg_nm_get(),fnc_nm,nbr_flg);
+ (void)fprintf(stdout,"%s: INFO %s reports %d objects with extraction flag (flg_xtr) set:\n",nco_prg_nm_get(),fnc_nm,nbr_flg);
- /* Loop table */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].flg_xtr) (void)fprintf(stdout,"[%d] %s\n",idx++,trv_tbl->lst[idx_tbl].nm_fll);
- }
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++)
+ if(trv_tbl->lst[idx_tbl].flg_xtr) (void)fprintf(stdout,"%d %s\n",idx++,trv_tbl->lst[idx_tbl].nm_fll);
} /* end trv_tbl_prn_xtr() */
@@ -962,4 +991,29 @@ trv_tbl_nsm_nm /* [fnc] Return variable object */
return NULL;
-} /* trv_tbl_nsm_nm() */
\ No newline at end of file
+} /* trv_tbl_nsm_nm() */
+
+
+trv_sct * /* O [sct] Table object */
+trv_tbl_nsm_nm_att /* [fnc] Return variable object */
+(const char * const var_nm, /* I [sng] Variable name (relative) to find */
+ const char * const grp_nm_fll_prn, /* I [sng] Ensemble parent group */
+ const trv_tbl_sct * const trv_tbl) /* I [sct] Traversal table */
+{
+ /* Purpose: Return variable object that matches criteria of ensemble parent group and variable relative name
+ NOTE: using "var_trv.grp_nm_fll" for match */
+
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
+ trv_sct var_trv=trv_tbl->lst[idx_tbl];
+ if(var_trv.nco_typ == nco_obj_typ_var && strcmp(var_nm,var_trv.nm) == 0){
+
+ if (strcmp(grp_nm_fll_prn,var_trv.grp_nm_fll) == 0){
+ return &trv_tbl->lst[idx_tbl];
+ }
+
+ }
+ }
+
+ return NULL;
+
+} /* trv_tbl_nsm_nm_att() */
diff --git a/src/nco/nco_grp_trv.h b/src/nco/nco_grp_trv.h
index 1a9aa28..83e2ad4 100644
--- a/src/nco/nco_grp_trv.h
+++ b/src/nco/nco_grp_trv.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.h,v 1.116 2014/03/05 01:07:14 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.h,v 1.117 2014/04/17 06:13:38 pvicente Exp $ */
/* Purpose: netCDF4 traversal storage */
@@ -199,4 +199,10 @@ trv_tbl_nsm_nm /* [fnc] Return variable object */
const char * const grp_nm_fll_prn, /* I [sng] Ensemble parent group */
const trv_tbl_sct * const trv_tbl); /* I [sct] Traversal table */
+trv_sct * /* O [sct] Table object */
+trv_tbl_nsm_nm_att /* [fnc] Return variable object */
+(const char * const var_nm, /* I [sng] Variable name (relative) to find */
+ const char * const grp_nm_fll_prn, /* I [sng] Ensemble parent group */
+ const trv_tbl_sct * const trv_tbl); /* I [sct] Traversal table */
+
#endif /* NCO_GRP_TRV_H */
diff --git a/src/nco/nco_grp_utl.c b/src/nco/nco_grp_utl.c
index 092d1f4..6a8b75e 100644
--- a/src/nco/nco_grp_utl.c
+++ b/src/nco/nco_grp_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.c,v 1.1369 2014/03/31 22:14:39 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.c,v 1.1437 2014/05/27 01:23:41 pvicente Exp $ */
/* Purpose: Group utilities */
@@ -28,7 +28,6 @@ nco_flg_set_grp_var_ass /* [fnc] Set flags for groups and variable
trv_sct trv_obj; /* [sct] Traversal table object */
for(unsigned int obj_idx=0;obj_idx<trv_tbl->nbr;obj_idx++){
-
/* Create shallow copy to avoid indirection */
trv_obj=trv_tbl->lst[obj_idx];
@@ -42,7 +41,6 @@ nco_flg_set_grp_var_ass /* [fnc] Set flags for groups and variable
/* Flag ancestor groups of all user-specified groups and variables */
if(strstr(grp_nm_fll,trv_obj.grp_nm_fll)) trv_tbl->lst[obj_idx].flg_ncs=True;
-
} /* end loop over obj_idx */
} /* end nco_flg_set_grp_var_ass() */
@@ -302,7 +300,7 @@ nco_def_grp_rcr /* [fnc] Define groups */
const int rcr_lvl) /* I [nbr] Recursion level */
{
/* Purpose: Recursively define parent group and all subgroups in output file */
- char grp_nm[NC_MAX_NAME];
+ char grp_nm[NC_MAX_NAME+1];
int idx;
int grp_nbr; /* I [nbr] Number of sub-groups */
@@ -547,7 +545,7 @@ nco_trv_rx_search /* [fnc] Search for pattern matches in traversal table */
} /* end nco_trv_rx_search() */
nco_bool
-nco_pth_mth /* [fnc] Name component in full path matches user string */
+nco_pth_mch /* [fnc] Name component in full path matches user string */
(char * const nm_fll, /* I [sng] Full name (path) */
char * const nm, /* I [sng] Name (relative) */
char * const usr_sng) /* [sng] User-supplied object name */
@@ -577,10 +575,10 @@ nco_pth_mth /* [fnc] Name component in full path matc
/* Look for partial match, not necessarily on path boundaries */
/* 20130829: Variables and group names may be proper subsets of ancestor group names
- e.g., variable named g9 in group named g90 is /g90/g9
- e.g., group named g1 in group named g10 is g10/g1
- Search algorithm must test same full name multiple times in such cases
- For variables, only final match (closest to end full name) need be fully tested */
+ e.g., variable named g9 in group named g90 is /g90/g9
+ e.g., group named g1 in group named g10 is g10/g1
+ Search algorithm must test same full name multiple times in such cases
+ For variables, only final match (closest to end full name) need be fully tested */
sbs_srt=NULL;
sbs_srt_nxt=nm_fll;
while((sbs_srt_nxt=strstr(sbs_srt_nxt,usr_sng))){
@@ -595,7 +593,7 @@ nco_pth_mth /* [fnc] Name component in full path matc
/* Does object name contain usr_sng? */
if(sbs_srt){
/* Ensure match spans (begins and ends on) whole path-component boundaries
- Full path-check starts at current substring */
+ Full path-check starts at current substring */
/* Does match begin at path component boundary ... directly on a slash? */
if(*sbs_srt == sls_chr) flg_pth_srt_bnd=True;
@@ -614,24 +612,18 @@ nco_pth_mth /* [fnc] Name component in full path matc
flg_pth_end_bnd=True;
/* Additional condition is user-supplied string must end with short form of name */
-
if(nm_lng <= usr_sng_lng){
var_mch_srt=usr_sng+usr_sng_lng-nm_lng;
if(!strcmp(var_mch_srt,nm)) flg_var_cnd=True;
} /* endif */
-
- }
-
- /* Set return value */
+ } /* !sbs_srt */
/* Must meet necessary flags */
- if(flg_pth_srt_bnd && flg_pth_end_bnd && flg_var_cnd){
- return True;
- }
+ if(flg_pth_srt_bnd && flg_pth_end_bnd && flg_var_cnd) return True;
return False;
-} /* nco_pth_mth() */
+} /* nco_pth_mch() */
nco_bool /* O [flg] All names are in file */
nco_xtr_mk /* [fnc] Check -v and -g input names and create extraction list */
@@ -639,6 +631,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
const int grp_xtr_nbr, /* I [nbr] Number of groups in list */
char ** var_lst_in, /* I [sng] User-specified list of variables */
const int var_xtr_nbr, /* I [nbr] Number of variables in list */
+ const nco_bool EXCLUDE_INPUT_LIST, /* I [flg] Exclude rather than extract groups and variables */
const nco_bool EXTRACT_ALL_COORDINATES, /* I [flg] Process all coordinates */
const nco_bool flg_unn, /* I [flg] Select union of specified groups and variables */
trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
@@ -647,6 +640,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
Verify both variables and groups
Handle regular expressions
Set flags in traversal table to help generate extraction list
+ Unmatched exclusion lists should succeed
Tests:
ncks -O -D 5 -g / ~/nco/data/in_grp.nc ~/foo.nc
@@ -656,6 +650,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
ncks -O -D 5 -g /g1/g1 ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -D 5 -g g1.+ ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -D 5 -v v1 ~/nco/data/in_grp.nc ~/foo.nc
+ ncks -O -D 5 -x -v lat2 ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -D 5 -g g1.+ -v v1,sc. ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -D 5 -v scl,/g1/g1g1/v1 ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -D 5 -g g3g.+,g9/ -v scl,/g1/g1g1/v1 ~/nco/data/in_grp.nc ~/foo.nc */
@@ -868,7 +863,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
} /* endif nco_obj_typ */
} /* end loop over tbl_idx */
- if(!flg_usr_mch_obj){
+ if(!flg_usr_mch_obj && !EXCLUDE_INPUT_LIST){
(void)fprintf(stderr,"%s: ERROR %s reports user-supplied %s name or regular expression %s is not in and/or does not match contents of input file\n",nco_prg_nm_get(),fnc_nm,(obj_typ == nco_obj_typ_grp) ? "group" : "variable",usr_sng);
nco_exit(EXIT_FAILURE);
} /* flg_usr_mch_obj */
@@ -892,7 +887,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
An object (group or variable) may have had its flg_mch set multiple times, e.g., once via rx and once via explicit listing
And since rx's often match multiple objects, no sense in flagging associated objects inside rx loop
Now all -g and -v constraints have been evaluated (after itr loop)
- Now speed through table once and set associated objects for all groups and variable flagged with flg_mch */
+ Now speed through table once and set associated objects for all groups and variables flagged with flg_mch */
for(unsigned int obj_idx=0;obj_idx<trv_tbl->nbr;obj_idx++)
if(trv_tbl->lst[obj_idx].flg_mch) nco_flg_set_grp_var_ass(trv_tbl->lst[obj_idx].grp_nm_fll,trv_tbl->lst[obj_idx].nco_typ,trv_tbl);
@@ -915,7 +910,7 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
} /* flg_unn */
/* Does matched or default group contain only metadata?
- Flag used in nco_xtr_grp_mrk() to preserve metadata-only groups on extraction list */
+ Flag used in nco_xtr_grp_mrk() to preserve metadata-only groups on extraction list */
for(unsigned int obj_idx=0;obj_idx<trv_tbl->nbr;obj_idx++)
if(trv_tbl->lst[obj_idx].nco_typ == nco_obj_typ_grp)
if(trv_tbl->lst[obj_idx].flg_mch || trv_tbl->lst[obj_idx].flg_dfl)
@@ -927,11 +922,14 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
/* Extract object if ... */
if(
- (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_mch) || /* ...union mode object matches user-specified string... */
- (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_vsg) || /* ...union mode variable selected because group matches... */
- (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_gcv) || /* ...union mode contains matched variable... */
+ /* No subsetting */
(trv_tbl->lst[obj_idx].flg_dfl) || /* ...user-specified no sub-setting... */
+ /* Intersection mode (default mode) */
(!flg_unn_ffc && trv_tbl->lst[obj_idx].flg_mch && trv_tbl->lst[obj_idx].flg_nsx) || /* ...intersection mode variable matches group... */
+ /* Union mode */
+ (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_mch) || /* ...union mode object matches user-specified string... */
+ (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_vsg) || /* ...union mode variable selected because group matches... */
+ (flg_unn_ffc && trv_tbl->lst[obj_idx].flg_gcv) || /* ...union mode group contains matched variable... */
False)
trv_tbl->lst[obj_idx].flg_xtr=True;
} /* end loop over obj_idx */
@@ -954,7 +952,6 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
} /* end loop over obj_idx */
} /* endif dbg */
- /* Print extraction list in debug mode */
if(nco_dbg_lvl_get() == nco_dbg_old) (void)trv_tbl_prn_xtr(trv_tbl,fnc_nm);
return (nco_bool)True;
@@ -962,30 +959,72 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
} /* end nco_xtr_mk() */
void
-nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
-(trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
+nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
+(nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
+ trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
/* Purpose: Convert extraction list to exclusion list
- NB: Exclusion is ambiguous for groups
+ Exclusion is ambiguous for groups
Consider, e.g., ncks -x -v /g1/v1
- Should that exclude g1 completely? what about other variables like /g1/v2?
- Hence, the exclusion flag should not always be used to permanant exclude groups
- On the other hand, there are some uses where the exclusion flag should exclude groups
+ Should that exclude g1 completely, e.g., exclude /g1/v2 as well? Probably not.
+ Extraction list for this case is nearly unambiguous: ~(/g1/v1)
+ Now consider a different way of specifying the same thing, i.e., ncks -x -g g1 -v v1
+ Since g1 is explicitly specified, it is ambiguous whether the -x should apply to all of g1
+ Extraction list for this case, as of 20140520, is same as above: ~(/g1/v1)
+ I.e., extract all except exclude intersection of -g and -v arguments
+ However, one could also decide to implement this extraction list: *g1*, ~(v1)
+ (here *g1* means the full group path contains a whole component named g1)
+ In other words elements matching -v arguments could be excluded, and those matching -g could be extracted
+ This would make it easy to extract certain groups, while excluding certain variables from those groups
+
+ There are use-cases where the exclusion flag should exclude groups
Consider, e.g., ncks -x -g g1
In this case g1 and all descendents should be excluded
+
+ ncdismember needs to create extraction lists like: *g1*, ~(/g1/v1)
+ Potential avenues to implement this include
+ 1. ncks -x -g g1 -v v1
+ 2. ncks -x -g g1 -v /g1/v1
+ 3. ncks --grp_xtr_var_xcl -g g1 -v v1
+
Given that, here is how this routine and NCO actually uses flg_xcl:
For variables, -x sets the exclusion flag and is "permanent", i.e., removes variable from extraction list
- For groups, -x sets the exclusion flag but is not "permanent"---it does not group from extraction list
+ For groups, -x sets the exclusion flag but is not "permanent"---it does not remove group from extraction list
Instead it is used to help determine whether group should be excluded for metadata-only containing groups
Group extraction is reset and done from scratch (except for flg_xcl/flg_mtd) in nco_xtr_grp_mrk() */
+ const char fnc_nm[]="nco_xtr_xcl()"; /* [sng] Function name */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- trv_tbl->lst[idx_tbl].flg_xtr=!trv_tbl->lst[idx_tbl].flg_xtr; /* Toggle extraction flag */
- trv_tbl->lst[idx_tbl].flg_xcl=!trv_tbl->lst[idx_tbl].flg_xcl; /* Mark that this object was explicitly excluded */
- } /* end for */
+ if(GRP_XTR_VAR_XCL){
+ /* Block implements GRP_XTR_VAR_XCL option introduced 20140521 */
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
+ if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
+ /* Toggle variable extraction under any of following conditions */
+ if(
+ /* Variable set to be extracted because it matches explicit -v extraction string */
+ (trv_tbl->lst[idx_tbl].flg_xtr) ||
+ /* Variable does not match explicit -v extraction string (so will not be excluded)
+ and variable is in group that does match explicit -g extraction string */
+ (!trv_tbl->lst[idx_tbl].flg_mch && trv_tbl->lst[idx_tbl].flg_vsg) ||
+ False){
+ trv_tbl->lst[idx_tbl].flg_xtr=!trv_tbl->lst[idx_tbl].flg_xtr; /* Toggle extraction flag */
+ trv_tbl->lst[idx_tbl].flg_xcl=True; /* Extraction flag was toggled by exclusion option */
+ } /* end if */
+ } /* end if */
+ } /* end for */
+ }else{
+ /* Block implements default (and only) behavior until 20140521,
+ i.e., extract all except exclude intersection of -g and -v arguments */
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
+ trv_tbl->lst[idx_tbl].flg_xtr=!trv_tbl->lst[idx_tbl].flg_xtr; /* Toggle extraction flag */
+ trv_tbl->lst[idx_tbl].flg_xcl=True; /* Extraction flag was toggled by exclusion option */
+ } /* end for */
+ } /* !GRP_XTR_VAR_XCL */
+
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)trv_tbl_prn_xtr(trv_tbl,fnc_nm);
return;
+
} /* end nco_xtr_xcl() */
void
@@ -1049,8 +1088,7 @@ nco_xtr_cf_prv_add /* [fnc] Add specified CF-compliant coordi
http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.1/cf-conventions.html#coordinate-system */
char **cf_lst; /* [sng] 1D array of list elements */
-
- char att_nm[NC_MAX_NAME]; /* [sng] Attribute name */
+ char att_nm[NC_MAX_NAME+1]; /* [sng] Attribute name */
const char dlm_sng[]=" "; /* [sng] Delimiter string */
@@ -1194,10 +1232,12 @@ nco_trv_tbl_nm_id /* [fnc] Create extraction list of nm_id_s
/* Get variable ID */
(void)nco_inq_varid(grp_id_in,trv_tbl->lst[idx_tbl].nm,&var_id);
+ grp_out_fll=(char *)nco_free(grp_out_fll);
+
/* 20130213: Necessary to allow MM3->MM4 and MM4->MM3 workarounds
- Store in/out group IDs as determined in nco_xtr_dfn()
- In MM3/4 cases, either grp_in_id or grp_out_id are always root
- Other is always root unless GPE is used */
+ Store in/out group IDs as determined in nco_xtr_dfn()
+ In MM3/4 cases, either grp_in_id or grp_out_id are always root
+ Other is always root unless GPE is used */
xtr_lst[nbr_tbl].grp_id_in=grp_id_in;
xtr_lst[nbr_tbl].grp_id_out=grp_id_out;
xtr_lst[nbr_tbl].id=var_id;
@@ -1218,14 +1258,16 @@ nco_xtr_crd_ass_add /* [fnc] Add to extraction list all coordi
{
/* Purpose: Add to extraction list all coordinates associated with extracted variables */
- char dmn_nm_var[NC_MAX_NAME]; /* [sng] Dimension name for *variable* */
+ const char fnc_nm[]="nco_xtr_crd_ass_add()"; /* [sng] Function name */
+
+ char dmn_nm_var[NC_MAX_NAME+1]; /* [sng] Dimension name for *variable* */
- int dmn_id_var[NC_MAX_DIMS]; /* [ID] Dimensions IDs array for variable */
- int grp_id; /* [ID] Group ID */
- int nbr_dmn_var; /* [nbr] Number of dimensions associated with current matched variable */
- int var_id; /* [ID] Variable ID */
+ int *dmn_id_var; /* [ID] Dimensions IDs array for variable */
+ int grp_id; /* [ID] Group ID */
+ int nbr_dmn_var; /* [nbr] Number of dimensions associated with current matched variable */
+ int var_id; /* [ID] Variable ID */
- long dmn_sz; /* [nbr] Dimension size */
+ long dmn_sz; /* [nbr] Dimension size */
/* Loop table */
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
@@ -1243,8 +1285,28 @@ nco_xtr_crd_ass_add /* [fnc] Add to extraction list all coordi
/* Get number of dimensions for *variable* */
(void)nco_inq_varndims(grp_id,var_id,&nbr_dmn_var);
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)fprintf(stdout,"%s: DEBUG %s <%s> nbr_dmn_var=%d var_trv.nbr_dmn=%d\n",nco_prg_nm_get(),fnc_nm,
+ var_trv.nm_fll,nbr_dmn_var,var_trv.nbr_dmn);
+
+ if (nbr_dmn_var != var_trv.nbr_dmn){
+ (void)fprintf(stdout,"%s: ERROR %s <%s> nbr_dmn_var=%d var_trv.nbr_dmn=%d\n",nco_prg_nm_get(),fnc_nm,
+ var_trv.nm_fll,nbr_dmn_var,var_trv.nbr_dmn);
+
+ (void)nco_prt_dmn(nc_id,var_trv.grp_nm_fll,var_trv.nm,var_trv.nm_fll,trv_tbl);
+ }
+
+ (void)fflush(stdout);
+ }
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)nco_prt_dmn(nc_id,var_trv.grp_nm_fll,var_trv.nm,var_trv.nm_fll,trv_tbl);
+ }
+
assert(nbr_dmn_var == var_trv.nbr_dmn);
+ dmn_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get dimension IDs for variable */
(void)nco_inq_vardimid(grp_id,var_id,dmn_id_var);
@@ -1254,7 +1316,7 @@ nco_xtr_crd_ass_add /* [fnc] Add to extraction list all coordi
/* Get dimension name */
(void)nco_inq_dim(grp_id,dmn_id_var[idx_var_dim],dmn_nm_var,&dmn_sz);
- char dmn_nm_grp[NC_MAX_NAME]; /* [sng] Dimension name for *group* */
+ char dmn_nm_grp[NC_MAX_NAME+1]; /* [sng] Dimension name for *group* */
const int flg_prn=1; /* [flg] Dimensions in all parent groups will also be retrieved */
@@ -1304,7 +1366,6 @@ nco_xtr_crd_ass_add /* [fnc] Add to extraction list all coordi
/* Subsetting should exclude ancestor with lower scope (closer to root) coordinates, add only the most in scope (usually in same group) */
break;
-
} /* If variable is on list, mark it for extraction */
dmn_nm_fll[psn_chr]='\0';
@@ -1324,11 +1385,15 @@ nco_xtr_crd_ass_add /* [fnc] Add to extraction list all coordi
if(dmn_nm_fll) dmn_nm_fll=(char *)nco_free(dmn_nm_fll);
} /* Does dimension match requested variable name (i.e., is it a coordinate variable?) */
- } /* Loop dimensions visible to group */
+ } /* Loop dimensions visible to group */
} /* Loop over dimensions of variable */
+ /* Free dimension IDs array */
+ dmn_id_var=(int *)nco_free(dmn_id_var);
} /* Filter variables to extract */
} /* Loop table */
+
return;
+
} /* end nco_xtr_crd_ass_cdf_add */
void
@@ -1336,9 +1401,10 @@ nco_get_prg_info(void) /* [fnc] Get program info */
{
/* Purpose: Return a numeric code depending on netCDF library version */
- int rcd=3;
char lbr_sng[NC_MAX_NAME+1];
+ int rcd=3;
+
strcpy(lbr_sng,nc_inq_libvers());
#if defined(ENABLE_NETCDF4) && defined(ENABLE_NETCDF4)
rcd=40;
@@ -1448,14 +1514,14 @@ nco_xtr_dmn_mrk /* [fnc] Mark extracted dimensions */
trv_sct var_trv=trv_tbl->lst[obj_idx];
/* For each variable to be extracted ... */
if(var_trv.nco_typ == nco_obj_typ_var && var_trv.flg_xtr){
- dmn_var_nbr=var_trv.nbr_dmn;
- for(dmn_var_idx=0;dmn_var_idx<dmn_var_nbr;dmn_var_idx++){
- if(var_trv.var_dmn[dmn_var_idx].dmn_id == trv_tbl->lst_dmn[dmn_idx].dmn_id){
- trv_tbl->lst_dmn[dmn_idx].flg_xtr=True;
- /* Break from loop over dmn_var_idx into loop over obj_idx */
- break;
- } /* endif match */
- } /* end loop over dmn_var_idx */
+ dmn_var_nbr=var_trv.nbr_dmn;
+ for(dmn_var_idx=0;dmn_var_idx<dmn_var_nbr;dmn_var_idx++){
+ if(var_trv.var_dmn[dmn_var_idx].dmn_id == trv_tbl->lst_dmn[dmn_idx].dmn_id){
+ trv_tbl->lst_dmn[dmn_idx].flg_xtr=True;
+ /* Break from loop over dmn_var_idx into loop over obj_idx */
+ break;
+ } /* endif match */
+ } /* end loop over dmn_var_idx */
} /* endif extracted variable */
/* Break from loop over obj_idx into loop over dmn_idx */
if(trv_tbl->lst_dmn[dmn_idx].flg_xtr) break;
@@ -1503,38 +1569,38 @@ nco_xtr_grp_mrk /* [fnc] Mark extracted groups */
/* For each group ... */
if(trv_tbl->lst[grp_idx].nco_typ == nco_obj_typ_grp){
/* Metadata-only containing groups already have flg_mtd set in nco_xtr_mk()
- Variable ancestry may not affect such groups, especially if they are leaf groups
- Set extraction flag to True (then continue) iff matching groups contain only metadata
- Otherwise set initialize extraction flag to False and overwrite later based on descendent variables */
+ Variable ancestry may not affect such groups, especially if they are leaf groups
+ Set extraction flag to True (then continue) iff matching groups contain only metadata
+ Otherwise set initialize extraction flag to False and overwrite later based on descendent variables */
if((trv_tbl->lst[grp_idx].flg_xtr=(!trv_tbl->lst[grp_idx].flg_xcl && trv_tbl->lst[grp_idx].flg_mtd))) continue;
if(!strcmp(trv_tbl->lst[grp_idx].grp_nm_fll,sls_sng)){
- /* Manually mark root group as extracted because matching algorithm below fails for root group
- (it looks for "//" in variable names) */
- trv_tbl->lst[grp_idx].flg_xtr=True;
- continue;
+ /* Manually mark root group as extracted because matching algorithm below fails for root group
+ (it looks for "//" in variable names) */
+ trv_tbl->lst[grp_idx].flg_xtr=True;
+ continue;
} /* endif root group */
grp_fll_sls=(char *)strdup(trv_tbl->lst[grp_idx].nm_fll);
grp_fll_sls=(char *)nco_realloc(grp_fll_sls,(trv_tbl->lst[grp_idx].nm_fll_lng+2L)*sizeof(char));
strcat(grp_fll_sls,sls_sng);
/* ... loop through ... */
for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
- /* ... all variables to be extracted ... */
- if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var && trv_tbl->lst[idx_var].flg_xtr){
- /* ... finds that full path to current group is contained in an extracted variable path ... */
- if((sbs_srt=strstr(trv_tbl->lst[idx_var].nm_fll,grp_fll_sls))){
- flg_pth_srt_bnd=False;
- flg_pth_end_bnd=False;
- /* ... and _begins_ a full group path of that variable ... */
- if(sbs_srt == trv_tbl->lst[idx_var].nm_fll) flg_pth_srt_bnd=True;
- /* Match ends on path component boundary, directly on a slash, because we added slash before matching */
- flg_pth_end_bnd=True;
- if(flg_pth_srt_bnd && flg_pth_end_bnd){
- /* ... and mark _only_ those groups for extraction... */
- trv_tbl->lst[grp_idx].flg_xtr=True;
- break;
- } /* endif */
- } /* endif full group path */
- } /* endif extracted variable */
+ /* ... all variables to be extracted ... */
+ if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var && trv_tbl->lst[idx_var].flg_xtr){
+ /* ... finds that full path to current group is contained in an extracted variable path ... */
+ if((sbs_srt=strstr(trv_tbl->lst[idx_var].nm_fll,grp_fll_sls))){
+ flg_pth_srt_bnd=False;
+ flg_pth_end_bnd=False;
+ /* ... and _begins_ a full group path of that variable ... */
+ if(sbs_srt == trv_tbl->lst[idx_var].nm_fll) flg_pth_srt_bnd=True;
+ /* Match ends on path component boundary, directly on a slash, because we added slash before matching */
+ flg_pth_end_bnd=True;
+ if(flg_pth_srt_bnd && flg_pth_end_bnd){
+ /* ... and mark _only_ those groups for extraction... */
+ trv_tbl->lst[grp_idx].flg_xtr=True;
+ break;
+ } /* endif */
+ } /* endif full group path */
+ } /* endif extracted variable */
} /* end loop over idx_var */
if(grp_fll_sls) grp_fll_sls=(char *)nco_free(grp_fll_sls);
} /* endif group */
@@ -1545,7 +1611,7 @@ nco_xtr_grp_mrk /* [fnc] Mark extracted groups */
2. For default (non user-specified) groups
3. For metadata-only groups that do not conflict with the above
What is lacking here is extraction flags for ancestors of all extracted groups
- Ancestor flags have been set in nco_xtr_mk() but must be discarded and reset
+ Ancestor flags were set in nco_xtr_mk() but must be discarded and reset
for same reasons that group flags in nco_xtr_mk() are unreliable for final list.
This loop ensures groups are marked for extraction if any descendents are marked
Mainly (only?) this catches ancestors of metadata only groups
@@ -1561,21 +1627,21 @@ nco_xtr_grp_mrk /* [fnc] Mark extracted groups */
strcat(grp_fll_sls,sls_sng);
/* Search for its path as a component of an extracted group path */
for(obj_idx=0;obj_idx<trv_tbl->nbr;obj_idx++){
- if(trv_tbl->lst[obj_idx].nco_typ == nco_obj_typ_grp && trv_tbl->lst[obj_idx].flg_xtr){
- if((sbs_srt=strstr(trv_tbl->lst[obj_idx].nm_fll,grp_fll_sls))){
- flg_pth_srt_bnd=False;
- flg_pth_end_bnd=False;
- /* Ancestor groups must match start of extracted group */
- if(sbs_srt == trv_tbl->lst[obj_idx].nm_fll) flg_pth_srt_bnd=True;
- /* Match ends on path component boundary, directly on a slash, because we added slash before matching */
- flg_pth_end_bnd=True;
- if(flg_pth_srt_bnd && flg_pth_end_bnd){
- trv_tbl->lst[grp_idx].flg_ncs=True;
- trv_tbl->lst[grp_idx].flg_xtr=True;
- continue;
- } /* endif current group is ancestor of extracted group */
- } /* endif current group may be ancestor of extracted group */
- } /* endif extracted group */
+ if(trv_tbl->lst[obj_idx].nco_typ == nco_obj_typ_grp && trv_tbl->lst[obj_idx].flg_xtr){
+ if((sbs_srt=strstr(trv_tbl->lst[obj_idx].nm_fll,grp_fll_sls))){
+ flg_pth_srt_bnd=False;
+ flg_pth_end_bnd=False;
+ /* Ancestor groups must match start of extracted group */
+ if(sbs_srt == trv_tbl->lst[obj_idx].nm_fll) flg_pth_srt_bnd=True;
+ /* Match ends on path component boundary, directly on a slash, because we added slash before matching */
+ flg_pth_end_bnd=True;
+ if(flg_pth_srt_bnd && flg_pth_end_bnd){
+ trv_tbl->lst[grp_idx].flg_ncs=True;
+ trv_tbl->lst[grp_idx].flg_xtr=True;
+ continue;
+ } /* endif current group is ancestor of extracted group */
+ } /* endif current group may be ancestor of extracted group */
+ } /* endif extracted group */
} /* end loop over obj_idx */
if(grp_fll_sls) grp_fll_sls=(char *)nco_free(grp_fll_sls);
} /* endif group */
@@ -1593,33 +1659,37 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
const md5_sct * const md5, /* I [sct] MD5 configuration */
const nco_bool CPY_GRP_METADATA, /* I [flg] Copy group metadata (attributes) */
const nco_bool CPY_VAR_METADATA, /* I [flg] Copy variable metadata (attributes) */
+ const nco_bool RETAIN_ALL_DIMS, /* I [flg] Retain all dimensions */
const int nco_pck_plc, /* I [enm] Packing policy */
const char * const rec_dmn_nm, /* I [sng] Record dimension name */
trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
/* Purpose: Define groups, variables, and attributes in output file
- rec_dmn_nm, if any, is name requested for (netCDF3) sole record dimension */
+ rec_dmn_nm, if any, is name requested for (netCDF3) sole record dimension */
const char fnc_nm[]="nco_xtr_dfn()"; /* [sng] Function name */
- char *grp_out_fll; /* [sng] Group name */
+ char *grp_out_fll; /* [sng] Group name */
- gpe_nm_sct *gpe_nm; /* [sct] GPE name duplicate check array */
+ int fl_fmt; /* [enm] netCDF file format */
+ int grp_id; /* [ID] Group ID in input file */
+ int grp_out_id; /* [ID] Group ID in output file */
+ int nbr_gpe_nm; /* [nbr] Number of GPE entries */
+ int var_out_id; /* [ID] Variable ID in output file */
+ int nco_prg_id; /* [enm] Program ID */
+ int nbr_dmn_cmn_out; /* [sct] Number of all dimensions in output file (used for RETAIN_ALL_DIMS) */
- int fl_fmt; /* [enm] netCDF file format */
- int grp_id; /* [ID] Group ID in input file */
- int grp_out_id; /* [ID] Group ID in output file */
- int nbr_gpe_nm; /* [nbr] Number of GPE entries */
- int var_out_id; /* [ID] Variable ID in output file */
- int nco_prg_id; /* [enm] Program ID */
+ nco_bool PCK_ATT_CPY; /* [flg] Copy attributes "scale_factor", "add_offset" */
- nco_bool PCK_ATT_CPY; /* [flg] Copy attributes "scale_factor", "add_offset" */
+ gpe_nm_sct *gpe_nm; /* [sct] GPE name duplicate check array */
- /* Get Program ID */
- nco_prg_id=nco_prg_id_get();
+ dmn_cmn_sct *dmn_cmn_out; /* [sct] List of all dimensions in output file (used for RETAIN_ALL_DIMS) */
+ nco_prg_id=nco_prg_id_get();
nbr_gpe_nm=0;
gpe_nm=NULL;
+ nbr_dmn_cmn_out=0;
+ dmn_cmn_out=NULL;
/* Get file format */
(void)nco_inq_format(nc_out_id,&fl_fmt);
@@ -1627,7 +1697,7 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
/* Isolate extra complexity of copying group metadata */
if(CPY_GRP_METADATA){
/* Extraction flag for groups was set in nco_xtr_grp_mrk()
- This loop defines those groups in output file and copies their metadata */
+ This loop defines those groups in output file and copies their metadata */
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
trv_sct grp_trv=trv_tbl->lst[idx_tbl];
@@ -1641,7 +1711,7 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
if(nco_prg_id_get() == ncge){
if(grp_trv.flg_nsm_prn){
- /* Ensemble parent groups */
+ /* Ensemble parent groups */
if(trv_tbl->nsm_sfx){
/* Define new name by appending suffix (e.g., /cesm + _avg) */
char *nm_fll_sfx=nco_bld_nsm_sfx(grp_trv.grp_nm_fll_prn,trv_tbl);
@@ -1729,7 +1799,7 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
if(gpe) nco_gpe_chk(grp_out_fll,var_trv.nm,&gpe_nm,&nbr_gpe_nm);
/* Define variable in output file */
- var_out_id=nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,&var_trv,trv_tbl);
+ var_out_id=nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,&var_trv,&dmn_cmn_out,&nbr_dmn_cmn_out,trv_tbl);
/* Copy variable's attributes */
if(CPY_VAR_METADATA){
@@ -1750,6 +1820,11 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
(void)nco_att_cpy(grp_id,grp_out_id,var_id,var_out_id,PCK_ATT_CPY);
+ for(int idx_dmn=0;idx_dmn<var_prc->nbr_dim;idx_dmn++){
+ var_prc->dim[idx_dmn]->xrf=(dmn_sct *)nco_dmn_free(var_prc->dim[idx_dmn]->xrf);
+ var_prc->dim[idx_dmn]=(dmn_sct *)nco_dmn_free(var_prc->dim[idx_dmn]);
+ }
+
var_prc=(var_sct *)nco_var_free(var_prc);
} /* !CPY_VAR_METADATA */
@@ -1775,9 +1850,19 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
} /* end if variable and flg_xtr */
} /* end loop over idx_tbl */
+ /* Retain all dimensions */
+ if (RETAIN_ALL_DIMS){
+ (void)nco_rad(nc_out_id,nbr_dmn_cmn_out,dmn_cmn_out,trv_tbl);
+ }
+
/* Memory management for GPE names */
for(int idx=0;idx<nbr_gpe_nm;idx++) gpe_nm[idx].var_nm_fll=(char *)nco_free(gpe_nm[idx].var_nm_fll);
+ for(int idx=0;idx<nbr_dmn_cmn_out;idx++){
+ dmn_cmn_out[idx].nm_fll=(char *)nco_free(dmn_cmn_out[idx].nm_fll);
+ }
+ dmn_cmn_out=(dmn_cmn_sct *)nco_free(dmn_cmn_out);
+
/* Print extraction list in developer mode */
if(nco_dbg_lvl_get() == nco_dbg_old) (void)trv_tbl_prn_xtr(trv_tbl,fnc_nm);
@@ -1858,7 +1943,7 @@ nco_xtr_wrt /* [fnc] Write extracted data to output fi
/* Get output group ID */
(void)nco_inq_grp_full_ncid(nc_id_out,grp_out_fll,&grp_id_out);
- if(nco_dbg_lvl_get() >= nco_dbg_vrb){
+ if(nco_dbg_lvl_get() >= nco_dbg_vrb && nco_dbg_lvl_get() != nco_dbg_dev){
(void)fprintf(stdout,"%s: INFO %s writing variable <%s> from ",nco_prg_nm_get(),fnc_nm,trv.nm_fll);
(void)nco_prn_grp_nm_fll(grp_id_in);
(void)fprintf(stdout," to ");
@@ -1869,6 +1954,9 @@ nco_xtr_wrt /* [fnc] Write extracted data to output fi
/* Copy variable data from input netCDF file to output netCDF file */
(void)nco_cpy_var_val_mlt_lmt_trv(grp_id_in,grp_id_out,fp_bnr,md5,&trv);
+ /* Memory management */
+ if(grp_out_fll) grp_out_fll=(char *)nco_free(grp_out_fll);
+
} /* endif */
} /* end loop over idx_tbl */
@@ -1884,10 +1972,10 @@ nco_prn_dmn /* [fnc] Print dimensions for a group */
(const int nc_id, /* I [ID] File ID */
const char * const grp_nm_fll) /* I [sng] Full name of group */
{
- char dmn_nm[NC_MAX_NAME]; /* [sng] Dimension name */
+ char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension name */
int *dmn_ids; /* [nbr] Dimensions IDs array */
- int dmn_ids_ult[NC_MAX_DIMS]; /* [nbr] Unlimited dimensions IDs array */
+ int *dmn_ids_ult; /* [nbr] Unlimited dimensions IDs array */
int grp_id; /* [ID] Group ID */
int nbr_dmn; /* [nbr] Number of dimensions */
int nbr_dmn_ult; /* [nbr] Number of unlimited dimensions */
@@ -1897,6 +1985,11 @@ nco_prn_dmn /* [fnc] Print dimensions for a group */
/* Obtain group ID from netCDF API using full group name */
(void)nco_inq_grp_full_ncid(nc_id,grp_nm_fll,&grp_id);
+ (void)nco_inq_unlimdims(grp_id,&nbr_dmn_ult,NULL);
+
+ /* Alloc dimension IDs array */
+ dmn_ids_ult=(int *)nco_malloc(nbr_dmn_ult*sizeof(int));
+
/* Obtain unlimited dimensions for group */
(void)nco_inq_unlimdims(grp_id,&nbr_dmn_ult,dmn_ids_ult);
@@ -1922,6 +2015,7 @@ nco_prn_dmn /* [fnc] Print dimensions for a group */
} /* end dnm_idx dimensions */
dmn_ids=(int *)nco_free(dmn_ids);
+ dmn_ids_ult=(int *)nco_free(dmn_ids_ult);
} /* end nco_prn_dmn() */
void
@@ -2000,7 +2094,6 @@ nco_bld_dmn_ids_trv /* [fnc] Build dimension info for all vari
> Department: Support netCDF
> Priority: Normal
> Status: Open
-
*/
(void)fprintf(stdout,"%s: INFO %s reports variable <%s> with duplicate dimensions\n",nco_prg_nm_get(),fnc_nm,var_trv.nm_fll);
@@ -2012,6 +2105,10 @@ nco_bld_dmn_ids_trv /* [fnc] Build dimension info for all vari
/* Store full dimension name */
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].dmn_nm_fll=strdup(dmn_trv->nm_fll);
+#ifdef DEBUG_LEAKS
+ assert(trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].grp_nm_fll == NULL);
+#endif
+
/* Store full group name where dimension is located */
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].grp_nm_fll=strdup(dmn_trv->grp_nm_fll);
@@ -2039,16 +2136,15 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
char var_nm[NC_MAX_NAME+1]; /* [sng] Variable name */
char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension name */
char rec_nm[NC_MAX_NAME+1]; /* [sng] Record dimension name */
-
char *var_nm_fll; /* [sng] Full path for variable */
char *dmn_nm_fll; /* [sng] Full path for dimension */
char *sls_psn; /* [sng] Current position of group path search */
const int flg_prn=0; /* [flg] All the dimensions in all parent groups will also be retrieved */
- int dmn_ids_grp[NC_MAX_DIMS]; /* [ID] Dimension IDs array for group */
- int dmn_ids_grp_ult[NC_MAX_DIMS];/* [ID] Unlimited (record) dimensions IDs array for group */
- int dmn_id_var[NC_MAX_DIMS]; /* [ID] Dimensions IDs array for variable */
+ int *dmn_ids_grp=NULL; /* [ID] Dimension IDs array for group */
+ int *dmn_ids_grp_ult=NULL; /* [ID] Unlimited (record) dimensions IDs array for group */
+ int *dmn_id_var=NULL; /* [ID] Dimensions IDs array for variable */
int *grp_ids; /* [ID] Sub-group IDs array */
int grp_dpt=0; /* [nbr] Depth of group (root = 0) */
int nbr_att; /* [nbr] Number of attributes */
@@ -2077,9 +2173,17 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
/* Obtain number of dimensions/variable/attributes for group; NB: ignore record dimension ID */
rcd+=nco_inq(grp_id,&nbr_dmn_grp,&nbr_var,&nbr_att,(int *)NULL);
+ /* Alloc dimension IDs array */
+ dmn_ids_grp=(int *)nco_malloc(nbr_dmn_grp*sizeof(int));
+
/* Obtain dimensions IDs for group */
rcd+=nco_inq_dimids(grp_id,&nbr_dmn_grp,dmn_ids_grp,flg_prn);
+ rcd+=nco_inq_unlimdims(grp_id,&nbr_rec,NULL);
+
+ /* Alloc dimension IDs array */
+ dmn_ids_grp_ult=(int *)nco_malloc(nbr_rec*sizeof(int));
+
/* Obtain unlimited dimensions for group */
rcd+=nco_inq_unlimdims(grp_id,&nbr_rec,dmn_ids_grp_ult);
@@ -2156,9 +2260,14 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
/* Iterate variables for this group */
for(int idx_var=0;idx_var<nbr_var;idx_var++){
+ dmn_id_var=NULL;
+
/* Get type of variable and number of dimensions */
rcd+=nco_inq_var(grp_id,idx_var,var_nm,&var_typ,&nbr_dmn_var,(int *)NULL,&nbr_att);
+ /* Alloc dimension IDs array */
+ dmn_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get dimension IDs for variable */
(void)nco_inq_vardimid(grp_id,idx_var,dmn_id_var);
@@ -2269,6 +2378,7 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
for(int idx_dmn_var=0;idx_dmn_var<nbr_dmn_var;idx_dmn_var++){
char dmn_nm_var[NC_MAX_NAME+1]; /* [sng] Dimension name */
+
long dmn_sz_var; /* [nbr] Dimension size */
/* Get dimension name; netCDF nc_inq_dimname() currently relative name */
@@ -2282,6 +2392,9 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
/* Free constructed name */
var_nm_fll=(char *)nco_free(var_nm_fll);
+ /* Free dimension IDs array */
+ dmn_id_var=(int *)nco_free(dmn_id_var);
+
} /* Iterate variables for this group */
/* Add dimension objects */
@@ -2358,7 +2471,9 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
grp_ids=(int *)nco_malloc(nbr_grp*sizeof(int));
rcd+=nco_inq_grps(grp_id,&nbr_grp,grp_ids);
- /* Heart of traversal construction: construct a new sub-group path and call function recursively with this new name; Voila */
+ /* Heart of traversal construction:
+ construct a new sub-group path and call function recursively with this new name;
+ Voila */
for(int grp_idx=0;grp_idx<nbr_grp;grp_idx++){
char *sub_grp_nm_fll=NULL; /* [sng] Sub group path */
int gid=grp_ids[grp_idx]; /* [id] Current group ID */
@@ -2385,7 +2500,10 @@ nco_grp_itr /* [fnc] Populate traversal table by exam
sub_grp_nm_fll=(char *)nco_free(sub_grp_nm_fll);
} /* end loop over groups */
- (void)nco_free(grp_ids);
+ grp_ids=(int *)nco_free(grp_ids);
+ dmn_ids_grp=(int *)nco_free(dmn_ids_grp);
+ dmn_ids_grp_ult=(int *)nco_free(dmn_ids_grp_ult);
+
return rcd;
} /* end nco_grp_itr() */
@@ -2527,7 +2645,7 @@ nco_bld_crd_var_trv /* [fnc] Build GTT "crd_sct" coordinate va
trv_tbl->lst_dmn[idx_dmn].crd[crd_idx]->dmn_grp_nm_fll=strdup(dmn_trv.grp_nm_fll);
/* Store relative name (same for dimension and variable) */
- trv_tbl->lst_dmn[idx_dmn].crd[crd_idx]->nm=strdup(var_trv.nm);
+ trv_tbl->lst_dmn[idx_dmn].crd[crd_idx]->nm=strdup(var_trv.nm);
/* Is a record dimension(variable) if the dimennsion is a record dimension */
trv_tbl->lst_dmn[idx_dmn].crd[crd_idx]->is_rec_dmn=dmn_trv.is_rec_dmn;
@@ -2657,21 +2775,17 @@ nco_prn_trv_tbl /* [fnc] Print GTT (Group Traversal Table)
/* a) case where the dimension has coordinate variables */
if(var_dmn.crd){
- crd_sct *crd=var_dmn.crd;
-
/* Limits */
- for(int lmt_idx=0;lmt_idx<crd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
- (void)prt_lmt(lmt_idx,crd->lmt_msa.lmt_dmn[lmt_idx]);
+ for(int lmt_idx=0;lmt_idx<var_dmn.crd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
+ (void)prt_lmt(lmt_idx,var_dmn.crd->lmt_msa.lmt_dmn[lmt_idx]);
}/* Limits */
/* ! case where the dimension has coordinate variables */
} else {
- dmn_trv_sct *ncd=var_dmn.ncd;
-
/* Limits */
- for(int lmt_idx=0;lmt_idx<ncd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
- (void)prt_lmt(lmt_idx,ncd->lmt_msa.lmt_dmn[lmt_idx]);
+ for(int lmt_idx=0;lmt_idx<var_dmn.ncd->lmt_msa.lmt_dmn_nbr;lmt_idx++){
+ (void)prt_lmt(lmt_idx,var_dmn.ncd->lmt_msa.lmt_dmn[lmt_idx]);
}/* Limits */
} /* ! case where the dimension has coordinate variables */
@@ -3006,10 +3120,14 @@ void
nco_bld_var_dmn /* [fnc] Assign variables dimensions to either coordinates or dimension structs */
(trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
{
- /* Purpose: Fill variable dimensions with pointers to either a coordinate variable or dimension structs */
+ /* Purpose: Fill variable dimensions with pointers to either a coordinate variable or dimension structs */
const char fnc_nm[]="nco_bld_var_dmn()"; /* [sng] Function name */
+#ifdef DEBUG_LEAKS
+ int crt_counter=0;
+#endif
+
/* Loop table */
for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
@@ -3018,7 +3136,9 @@ nco_bld_var_dmn /* [fnc] Assign variables dimensions to ei
trv_sct var_trv=trv_tbl->lst[idx_var];
/* Loop dimensions for object (variable) */
- for(int idx_dmn_var=0;idx_dmn_var<var_trv.nbr_dmn;idx_dmn_var++) {
+ for(int idx_dmn_var=0;idx_dmn_var<var_trv.nbr_dmn;idx_dmn_var++){
+
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].crd=NULL;
/* Get unique dimension ID from variable dimension */
int var_dmn_id=var_trv.var_dmn[idx_dmn_var].dmn_id;
@@ -3029,22 +3149,42 @@ nco_bld_var_dmn /* [fnc] Assign variables dimensions to ei
/* No coordinates */
if(dmn_trv->crd_nbr == 0){
- if(nco_dbg_lvl_get() == nco_dbg_old){
- (void)fprintf(stdout,"%s: INFO %s reports variable <%s> with *NON* coordinate dimension [%d]%s\n",nco_prg_nm_get(),fnc_nm,
- var_trv.nm_fll,idx_dmn_var,var_trv.var_dmn[idx_dmn_var].dmn_nm_fll);
- } /* endif dbg */
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"%s: INFO %s reports variable <%s> with *NON* coordinate dimension [%d]%s\n",nco_prg_nm_get(),fnc_nm,var_trv.nm_fll,idx_dmn_var,var_trv.var_dmn[idx_dmn_var].dmn_nm_fll);
/* Mark as False the position of the bool array coordinate/non coordinate */
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var=False;
- /* Store unique dimension (non coordinate ) */
- trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd=dmn_trv;
+ /* Store unique dimension (non coordinate) */
+
+ /* Deep-copy dimension */
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd=(dmn_trv_sct *)nco_malloc(sizeof(dmn_trv_sct));
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->grp_nm_fll=(char *)strdup(dmn_trv->grp_nm_fll);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->nm_fll=(char *)strdup(dmn_trv->nm_fll);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->nm=(char *)strdup(dmn_trv->nm);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->crd=NULL;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->crd_nbr=0;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->dmn_id=dmn_trv->dmn_id;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->flg_xtr=dmn_trv->flg_xtr;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->has_crd_scp=dmn_trv->has_crd_scp;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->is_rec_dmn=dmn_trv->is_rec_dmn;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->sz=dmn_trv->sz;
+
+ /* MSA */
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.NON_HYP_DMN=dmn_trv->lmt_msa.NON_HYP_DMN;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_cnt=dmn_trv->lmt_msa.dmn_cnt;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_nm=(char *)strdup(dmn_trv->lmt_msa.dmn_nm);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_sz_org=dmn_trv->lmt_msa.dmn_sz_org;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_crr=dmn_trv->lmt_msa.lmt_crr;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_dmn=NULL;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_dmn_nbr=0;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.MSA_USR_RDR=dmn_trv->lmt_msa.MSA_USR_RDR;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.WRP=dmn_trv->lmt_msa.WRP;
}else if(dmn_trv->crd_nbr > 0){
/* There are coordinates; one must be chosen
- Scope definition: In the same group of the variable or beneath (closer to root)
- Above: out of scope */
+ Scope definition: In the same group of the variable or beneath (closer to root)
+ Above: out of scope */
crd_sct *crd=NULL; /* [sct] Coordinate to assign to dimension of variable */
@@ -3058,7 +3198,12 @@ nco_bld_var_dmn /* [fnc] Assign variables dimensions to ei
/* Mark as True */
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var=True;
- /* Deep-copy coordinate */
+#ifdef DEBUG_LEAKS
+ crt_counter++;
+ assert(trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].crd == NULL);
+#endif
+
+ /* Deep-copy coordinate */
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].crd=(crd_sct *)nco_malloc(sizeof(crd_sct));
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].crd->crd_nm_fll=(char *)strdup(crd->crd_nm_fll);
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].crd->dmn_nm_fll=(char *)strdup(crd->dmn_nm_fll);
@@ -3090,7 +3235,30 @@ nco_bld_var_dmn /* [fnc] Assign variables dimensions to ei
trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var=False;
/* Store the unique dimension as if it was a non coordinate */
- trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd=dmn_trv;
+
+ /* Deep-copy dimension */
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd=(dmn_trv_sct *)nco_malloc(sizeof(dmn_trv_sct));
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->grp_nm_fll=(char *)strdup(dmn_trv->grp_nm_fll);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->nm_fll=(char *)strdup(dmn_trv->nm_fll);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->nm=(char *)strdup(dmn_trv->nm);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->crd=NULL;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->crd_nbr=0;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->dmn_id=dmn_trv->dmn_id;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->flg_xtr=dmn_trv->flg_xtr;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->has_crd_scp=dmn_trv->has_crd_scp;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->is_rec_dmn=dmn_trv->is_rec_dmn;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->sz=dmn_trv->sz;
+
+ /* MSA */
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.NON_HYP_DMN=dmn_trv->lmt_msa.NON_HYP_DMN;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_cnt=dmn_trv->lmt_msa.dmn_cnt;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_nm=(char *)strdup(dmn_trv->lmt_msa.dmn_nm);
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.dmn_sz_org=dmn_trv->lmt_msa.dmn_sz_org;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_crr=dmn_trv->lmt_msa.lmt_crr;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_dmn=NULL;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.lmt_dmn_nbr=0;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.MSA_USR_RDR=dmn_trv->lmt_msa.MSA_USR_RDR;
+ trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].ncd->lmt_msa.WRP=dmn_trv->lmt_msa.WRP;
} /* None was found in scope */
} /* There are coordinates; one must be chosen */
@@ -3101,37 +3269,22 @@ nco_bld_var_dmn /* [fnc] Assign variables dimensions to ei
/* Check if bool array is all filled */
/* Loop table */
- for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
-
- /* Filter variables */
- if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var){
- trv_sct var_trv=trv_tbl->lst[idx_var];
- /* Loop dimensions for object (variable) */
- for(int idx_dmn_var=0;idx_dmn_var<var_trv.nbr_dmn;idx_dmn_var++) {
- if(trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var == nco_obj_typ_err) {
-
- if(nco_dbg_lvl_get() == nco_dbg_old ){
- (void)fprintf(stdout,"%s: OOPSY %s reports variable <%s> with NOT filled dimension [%d]%s\n",nco_prg_nm_get(),fnc_nm,
- var_trv.nm_fll,idx_dmn_var,var_trv.var_dmn[idx_dmn_var].dmn_nm_fll);
- } /* endif dbg */
- }
- } /* Loop dimensions for object (variable) */
- } /* Filter variables */
- } /* Loop table */
+ for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++)
+ if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var)
+ for(int idx_dmn_var=0;idx_dmn_var<trv_tbl->lst[idx_var].nbr_dmn;idx_dmn_var++)
+ if(trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var == nco_obj_typ_err)
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"%s: OOPSY %s reports variable <%s> with NOT filled dimension [%d]%s\n",nco_prg_nm_get(),fnc_nm,trv_tbl->lst[idx_var].nm_fll,idx_dmn_var,trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].dmn_nm_fll);
/* Check if bool array is all filled */
/* Loop table */
- for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
-
- /* Filter variables */
- if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var){
- trv_sct var_trv=trv_tbl->lst[idx_var];
- /* Loop dimensions for object (variable) */
- for(int idx_dmn_var=0;idx_dmn_var<var_trv.nbr_dmn;idx_dmn_var++) {
+ for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++)
+ if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var)
+ for(int idx_dmn_var=0;idx_dmn_var<trv_tbl->lst[idx_var].nbr_dmn;idx_dmn_var++)
assert(trv_tbl->lst[idx_var].var_dmn[idx_dmn_var].is_crd_var != nco_obj_typ_err);
- } /* Loop dimensions for object (variable) */
- } /* Filter variables */
- } /* Loop table */
+
+#ifdef DEBUG_LEAKS
+ if(nco_dbg_lvl_get() >= nco_dbg_sup)(void)fprintf(stdout,"%s: %s DEBUG %d crd",nco_prg_nm_get(),fnc_nm,crt_counter);
+#endif
} /* nco_bld_var_dmn() */
@@ -3147,7 +3300,7 @@ nco_wrt_trv_tbl /* [fnc] Obtain file information from GTT (
int nbr_dmn_var; /* [nbr] Number of variables in group */
int grp_id; /* [id] Group ID */
int var_id; /* [id] Variable ID */
- int dmn_id_var[NC_MAX_DIMS]; /* [id] Dimensions IDs array for variable */
+ int *dmn_id_var; /* [id] Dimensions IDs array for variable */
for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
trv_sct var_trv=trv_tbl->lst[idx_var];
@@ -3173,6 +3326,9 @@ nco_wrt_trv_tbl /* [fnc] Obtain file information from GTT (
/* Get type of variable and number of dimensions */
(void)nco_inq_var(grp_id,var_id,(char *)NULL,(nc_type *)NULL,&nbr_dmn_var,(int *)NULL,(int *)NULL);
+ /* Alloc dimension IDs array */
+ dmn_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get dimension IDs for variable */
(void)nco_inq_vardimid(grp_id,var_id,dmn_id_var);
@@ -3199,6 +3355,8 @@ nco_wrt_trv_tbl /* [fnc] Obtain file information from GTT (
(void)fprintf(stdout,"\n");
}
+ dmn_id_var=(int *)nco_free(dmn_id_var);
+
} /* endif */
} /* end loop over idx_tbl */
@@ -3216,6 +3374,7 @@ nco_gpe_chk /* [fnc] Check valid GPE new name */
const char fnc_nm[]="nco_gpe_chk()"; /* [sng] Function name */
const char sls_sng[]="/"; /* [sng] Slash string */
+
char *gpe_var_nm_fll=NULL; /* [sng] absolute GPE variable path */
int nbr_gpe = *nbr_gpe_nm;
@@ -3500,9 +3659,9 @@ nco_prc_cmn /* [fnc] Process objects (ncbo only) */
int var_id_2; /* [id] Variable ID in input file */
int var_out_id; /* [id] Variable ID in output file */
- var_sct *var_prc_1; /* [sct] Variable to process in file 1 */
- var_sct *var_prc_2; /* [sct] Variable to process in file 2 */
- var_sct *var_prc_out; /* [sct] Variable to process in output */
+ var_sct *var_prc_1=NULL; /* [sct] Variable to process in file 1 */
+ var_sct *var_prc_2=NULL; /* [sct] Variable to process in file 2 */
+ var_sct *var_prc_out=NULL; /* [sct] Variable to process in output */
var_sct *var_prc_gtr; /* [sct] Greater rank variable to process */
var_sct *var_prc_lsr; /* [sct] Lesser rank variable to process */
@@ -3633,9 +3792,9 @@ nco_prc_cmn /* [fnc] Process objects (ncbo only) */
/* Define variable in output file */
if (RNK_1_GTR){
- var_out_id=nco_cpy_var_dfn_trv(nc_id_1,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv_1,trv_tbl_1);
+ var_out_id=nco_cpy_var_dfn_trv(nc_id_1,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv_1,NULL,0,trv_tbl_1);
}else{
- var_out_id=nco_cpy_var_dfn_trv(nc_id_2,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv_2,trv_tbl_2);
+ var_out_id=nco_cpy_var_dfn_trv(nc_id_2,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv_2,NULL,0,trv_tbl_2);
}
/* Copy variable's attributes */
@@ -3680,8 +3839,10 @@ nco_prc_cmn /* [fnc] Process objects (ncbo only) */
var_prc_out->id=var_out_id;
/* fxm: gtr or lsr? */
- var_prc_out->srt=var_prc_gtr->srt;
- var_prc_out->cnt=var_prc_gtr->cnt;
+ for(int idx_dmn=0;idx_dmn<var_prc_out->nbr_dim;idx_dmn++) {
+ var_prc_out->srt[idx_dmn]=var_prc_gtr->srt[idx_dmn];
+ var_prc_out->cnt[idx_dmn]=var_prc_gtr->cnt[idx_dmn];
+ }
/* Set missing value */
has_mss_val=var_prc_gtr->has_mss_val;
@@ -3714,12 +3875,15 @@ nco_prc_cmn /* [fnc] Process objects (ncbo only) */
} /* !prc_typ */
} /* !flg_dfn */
+ for(int idx_dmn=0;idx_dmn<var_prc_1->nbr_dim;idx_dmn++){
+ var_prc_1->dim[idx_dmn]->xrf=(dmn_sct *)nco_dmn_free(var_prc_1->dim[idx_dmn]->xrf);
+ var_prc_1->dim[idx_dmn]=(dmn_sct *)nco_dmn_free(var_prc_1->dim[idx_dmn]);
+ }
+
/* Free allocated variable structures */
- var_prc_1->val.vp=nco_free(var_prc_1->val.vp);
- var_prc_2->val.vp=nco_free(var_prc_2->val.vp);
- var_prc_1=(var_sct *)nco_free(var_prc_1);
- var_prc_2=(var_sct *)nco_free(var_prc_2);
- var_prc_out=(var_sct *)nco_free(var_prc_out);
+ var_prc_out=(var_sct *)nco_var_free(var_prc_out);
+ var_prc_1=(var_sct *)nco_var_free(var_prc_1);
+ var_prc_2=(var_sct *)nco_var_free(var_prc_2);
/* Free output path name */
grp_out_fll=(char *)nco_free(grp_out_fll);
@@ -3784,9 +3948,8 @@ nco_cpy_fix /* [fnc] Copy fixed object (ncbo only) */
(void)nco_var_lst_dvd_trv(var_prc_1,var_prc_out,CNV_CCM_CCSM_CF,FIX_REC_CRD,nco_pck_map_nil,nco_pck_plc_nil,dmn_xcl,nbr_dmn_xcl,&prc_typ_1);
if(prc_typ_1 != fix_typ){
- var_prc_1->val.vp=nco_free(var_prc_1->val.vp);
- var_prc_1=(var_sct *)nco_free(var_prc_1);
- var_prc_out=(var_sct *)nco_free(var_prc_out);
+ var_prc_1=(var_sct *)nco_var_free(var_prc_1);
+ var_prc_out=(var_sct *)nco_var_free(var_prc_out);
grp_out_fll=(char *)nco_free(grp_out_fll);
return;
} /* endif */
@@ -3804,7 +3967,7 @@ nco_cpy_fix /* [fnc] Copy fixed object (ncbo only) */
if(gpe)(void)nco_gpe_chk(grp_out_fll,trv_1->nm,&gpe_nm,&nbr_gpe_nm);
/* Define variable in output file */
- var_out_id=nco_cpy_var_dfn_trv(nc_id_1,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,(char *)NULL,trv_1,trv_tbl_1);
+ var_out_id=nco_cpy_var_dfn_trv(nc_id_1,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,(char *)NULL,trv_1,NULL,0,trv_tbl_1);
/* Copy variable's attributes */
(void)nco_att_cpy(grp_id_1,grp_out_id,var_id_1,var_out_id,PCK_ATT_CPY);
@@ -3820,13 +3983,12 @@ nco_cpy_fix /* [fnc] Copy fixed object (ncbo only) */
/* Copy non-processed variable */
(void)nco_cpy_var_val_mlt_lmt_trv(grp_id_1,grp_out_id,(FILE *)NULL,md5,trv_1);
-
+
} /* !flg_dfn */
/* Free allocated variable structures */
- var_prc_1->val.vp=nco_free(var_prc_1->val.vp);
- var_prc_1=(var_sct *)nco_free(var_prc_1);
- var_prc_out=(var_sct *)nco_free(var_prc_out);
+ var_prc_1=(var_sct *)nco_var_free(var_prc_1);
+ var_prc_out=(var_sct *)nco_var_free(var_prc_out);
/* Free output path name */
grp_out_fll=(char *)nco_free(grp_out_fll);
@@ -3956,11 +4118,11 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
{
/* Purpose: nco_malloc() and return a completed var_sct; traversal version of nco_var_fll() */
- char dmn_nm[NC_MAX_NAME]; /* [sng] Dimension name */
+ char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension name */
int fl_fmt; /* [enm] File format */
- int dmn_in_id_var[NC_MAX_DIMS];/* [id] Dimension IDs array for variable */
- int nco_prg_id; /* [enm] Program ID */
+ int *dmn_in_id_var; /* [id] Dimension IDs array for variable */
+ int nco_prg_id; /* [enm] Program ID */
int dmn_id; /* [nbr] Dimension ID */
long dmn_cnt; /* [nbr] Dimensio hyperslabbed count (size) */
@@ -3999,6 +4161,8 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
assert(var->nbr_dim == var_trv->nbr_dmn);
assert(var->nbr_att == var_trv->nbr_att);
+ dmn_in_id_var=(int *)nco_malloc(var->nbr_dim*sizeof(int));
+
/* Get dimension IDs for *variable* */
(void)nco_inq_vardimid(var->nc_id,var->id,dmn_in_id_var);
@@ -4041,12 +4205,8 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
/* Get hyperslabbed count */
dmn_cnt=-1;
- if(var_trv->var_dmn[idx_dmn].crd){
- dmn_cnt=var_trv->var_dmn[idx_dmn].crd->lmt_msa.dmn_cnt;
- }
- else if(var_trv->var_dmn[idx_dmn].ncd){
- dmn_cnt=var_trv->var_dmn[idx_dmn].ncd->lmt_msa.dmn_cnt;
- }
+ if(var_trv->var_dmn[idx_dmn].crd) dmn_cnt=var_trv->var_dmn[idx_dmn].crd->lmt_msa.dmn_cnt;
+ else if(var_trv->var_dmn[idx_dmn].ncd) dmn_cnt=var_trv->var_dmn[idx_dmn].ncd->lmt_msa.dmn_cnt;
var->cnt[idx_dmn]=dmn_cnt;
var->end[idx_dmn]=dmn_cnt-1;
@@ -4055,16 +4215,12 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
var->sz*=dmn_cnt;
/* This definition of "is_rec_var" says if any of the dimensions is a record then the variable is marked as so */
- if(dmn_trv->is_rec_dmn){
- var->is_rec_var=True;
- } else {
- var->sz_rec*=var->cnt[idx_dmn];
- }
+ if(dmn_trv->is_rec_dmn) var->is_rec_var=True; else var->sz_rec*=var->cnt[idx_dmn];
/* Return a completed dmn_sct, use dimension ID and name from TRV object */
dim=nco_dmn_fll(grp_id,dmn_id,dmn_trv->nm);
- assert(strcmp(dim->nm,dmn_trv->nm) == 0);
+ assert(!strcmp(dim->nm,dmn_trv->nm));
assert((size_t)dim->sz == dmn_trv->sz);
assert(dim->id == var->dmn_id[idx_dmn]);
@@ -4082,6 +4238,7 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
var->dim[idx_dmn]=(dmn_sct *)nco_malloc(sizeof(dmn_sct));
var->dim[idx_dmn]->nm=(char *)strdup(dim->nm);
+ var->dim[idx_dmn]->nm_fll=NULL;
var->dim[idx_dmn]->id=dim->id;
var->dim[idx_dmn]->cnk_sz=dim->cnk_sz;
var->dim[idx_dmn]->srt=dim->srt;
@@ -4104,7 +4261,9 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
dim->xrf->is_rec_dmn=dim->is_rec_dmn;
dim->xrf->is_crd_dmn=dim->is_crd_dmn;
- var->dim[idx_dmn]->xrf=dim->xrf;
+ var->dim[idx_dmn]->xrf=nco_dmn_dpl(dim->xrf);
+ dim->xrf=nco_dmn_free(dim->xrf);
+ dim=nco_dmn_free(dim);
} /* Loop dimensions */
@@ -4169,9 +4328,12 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
}
var->undefined=False; /* [flg] Used by ncap parser */
+
+ dmn_in_id_var=(int *)nco_free(dmn_in_id_var);
return var;
} /* nco_var_fll_trv() */
+
int /* O [id] Output file variable ID */
nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output file */
(const int nc_in_id, /* I [ID] netCDF input file ID */
@@ -4182,6 +4344,8 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
const gpe_sct * const gpe, /* I [sct] GPE structure */
const char * const rec_dmn_nm_cst, /* I [sng] User-specified record dimension, if any, to create or fix in output file */
trv_sct *var_trv, /* I/O [sct] Object to write (variable) trv_map_dmn_set() is O */
+ dmn_cmn_sct **dmn_cmn_out, /* I/O [sct] List of all dimensions in output file (used for RETAIN_ALL_DIMS) */
+ int *nbr_dmn_cmn_out, /* I/O [sct] Number of all dimensions in output file (used for RETAIN_ALL_DIMS) */
trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
/* Purpose: Copy variable metadata from input netCDF file to output netCDF file
@@ -4202,14 +4366,14 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
char *rec_dmn_nm=NULL; /* [sng] User-specified record dimension name */
char *rec_dmn_nm_mlc=NULL; /* [sng] Local copy of rec_dmn_nm_cst, which may be encoded */
char *grp_dmn_out_fll=NULL; /* [sng] Group name of dimension in output */
- char dmn_nm[NC_MAX_NAME]; /* [sng] Dimension name */
- char dmn_nm_grp[NC_MAX_NAME]; /* [sng] Dimension name for group */
+ char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension name */
+ char dmn_nm_grp[NC_MAX_NAME+1]; /* [sng] Dimension name for group */
- int dmn_in_id_var[NC_MAX_DIMS]; /* [id] Dimension IDs array for input variable */
+ int *dmn_in_id_var; /* [id] Dimension IDs array for input variable */
int dmn_out_id[NC_MAX_DIMS]; /* [id] Dimension IDs array for output variable */
- int dmn_out_id_grp[NC_MAX_DIMS]; /* [id] Dimension IDs array in output group */
- int dmn_idx_in_out[NC_MAX_DIMS]; /* [idx] Dimension correspondence, input->output (ncpdq) */
- int dmn_out_id_tmp[NC_MAX_DIMS]; /* [idx] Copy of dmn_out_id (ncpdq) */
+ int *dmn_out_id_grp; /* [id] Dimension IDs array in output group */
+ int *dmn_idx_in_out; /* [idx] Dimension correspondence, input->output (ncpdq) */
+ int *dmn_out_id_tmp; /* [idx] Copy of dmn_out_id (ncpdq) */
int rec_dmn_out_id; /* [id] Record dimension for output variable */
int var_in_id; /* [id] Variable ID */
int var_out_id; /* [id] Variable ID */
@@ -4243,7 +4407,7 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
dmn_trv_sct *dmn_trv; /* [sct] Unique dimension object */
- dmn_cmn_sct dmn_cmn[NC_MAX_DIMS]; /* [sct] Dimension information on output */
+ dmn_cmn_sct dmn_cmn[NC_MAX_DIMS]; /* [sct] Dimension information on output (for a variable ) */
rec_dmn_out_id=NCO_REC_DMN_UNDEFINED;
@@ -4314,6 +4478,11 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
var_typ=var_trv->var_typ;
nbr_dmn_var=var_trv->nbr_dmn;
+ /* Alloc array */
+ dmn_in_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+ dmn_idx_in_out=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+ dmn_out_id_tmp=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get dimension IDs for variable */
(void)nco_inq_vardimid(grp_in_id,var_in_id,dmn_in_id_var);
@@ -4422,6 +4591,11 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
if(rcd_lcl == NC_NOERR) (void)fprintf(stdout,"%s: DEBUG %s dimension is visible (by parents or group) #%d<%s>\n",nco_prg_nm_get(),fnc_nm,var_dim_id,dmn_trv->nm_fll); else (void)fprintf(stdout,"%s: DEBUG %s dimension is not visible (by parents or group) #%d<%s>\n",nco_prg_nm_get(),fnc_nm,var_dim_id,dmn_trv->nm_fll);
} /* endif dbg */
+ (void)nco_inq_dimids(grp_dmn_out_id,&nbr_dmn_out_grp,NULL,0);
+
+ /* Alloc array */
+ dmn_out_id_grp=(int *)nco_malloc(nbr_dmn_out_grp*sizeof(int));
+
/* Check output group (only) dimensions */
(void)nco_inq_dimids(grp_dmn_out_id,&nbr_dmn_out_grp,dmn_out_id_grp,0);
@@ -4440,6 +4614,9 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
} /* strcmp() */
} /* Loop group defined dimensions */
+
+ dmn_out_id_grp=(int *)nco_free(dmn_out_id_grp);
+
/* Define dimension in output file if necessary */
if(NEED_TO_DEFINE_DIM){
@@ -4571,9 +4748,7 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
/* Define dimension and obtain dimension ID */
(void)nco_def_dim(grp_dmn_out_id,dmn_nm,dmn_cnt,&dmn_id_out);
- if(nco_dbg_lvl_get() == nco_dbg_old){
- (void)fprintf(stdout,"%s: DEBUG %s Defined dimension <%s><%s>#%d\n",nco_prg_nm_get(),fnc_nm,grp_dmn_out_fll,dmn_nm,dmn_id_out);
- }
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"%s: DEBUG %s Defined dimension <%s><%s>#%d\n",nco_prg_nm_get(),fnc_nm,grp_dmn_out_fll,dmn_nm,dmn_id_out);
/* Redefine output dimension array for this dimension */
(void)nco_dfn_dmn(dmn_nm,dmn_cnt,dmn_id_out,dmn_cmn,var_trv->nbr_dmn);
@@ -4581,9 +4756,6 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
dmn_out_id[idx_dmn]=dmn_id_out;
} /* !DEFINE_DIM */
- /* Memory management after defining current output dimension */
- if(grp_dmn_out_fll) grp_dmn_out_fll=(char *)nco_free(grp_dmn_out_fll);
-
} /* end if dimension is not yet defined */
/* Die informatively if record dimension is not first dimension in netCDF3 output */
@@ -4592,6 +4764,9 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
nco_exit(EXIT_FAILURE);
} /* end if err */
+ /* Memory management after defining current output dimension */
+ if(grp_dmn_out_fll) grp_dmn_out_fll=(char *)nco_free(grp_dmn_out_fll);
+
} /* End of the very important dimension loop */
/* If variable needs dimension re-ordering */
@@ -4655,6 +4830,10 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
/* Obtain netCDF type to define variable from NCO program ID */
var_typ_out=nco_get_typ(var_prc);
+ for(int idx_dmn=0;idx_dmn<var_prc->nbr_dim;idx_dmn++){
+ var_prc->dim[idx_dmn]->xrf=(dmn_sct *)nco_dmn_free(var_prc->dim[idx_dmn]->xrf);
+ var_prc->dim[idx_dmn]=(dmn_sct *)nco_dmn_free(var_prc->dim[idx_dmn]);
+ }
var_prc=(var_sct *)nco_var_free(var_prc);
} /* !(ncflint || ncpdq) */
@@ -4677,7 +4856,7 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
/* Allow ncks to autoconvert netCDF4 atomic types to netCDF3 output type ... */
if(nco_prg_id == ncks && fl_fmt != NC_FORMAT_NETCDF4 && !nco_typ_nc3(var_typ_out)) var_typ_out=nco_typ_nc4_nc3(var_typ_out);
/* fxm TODO nco1106 too complicated--need phony dimensions for NC_CHAR array length */
- /* if(var_typ_out == NC_STRING) nbr_dmn_var_out++; */
+ /* if(var_typ_out == NC_STRING) nbr_dmn_var_out++; */
(void)nco_def_var(grp_out_id,var_nm,var_typ_out,nbr_dmn_var_out,dmn_out_id,&var_out_id);
@@ -4691,6 +4870,52 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
} /* !ncwa */
+ /* If output dimensions array exists */
+ if (dmn_cmn_out!=NULL && nco_prg_id == ncks){
+
+ nco_bool dmn_flg=False;
+
+ /* Loop over each dimension in variable */
+ for(int idx_dmn=0;idx_dmn<nbr_dmn_var;idx_dmn++){
+
+ /* Loop constructed array of output dimensions to see if already inserted */
+ for(int idx_dmn_out=0;idx_dmn_out<*nbr_dmn_cmn_out;idx_dmn_out++){
+
+ /* Match by ID */
+ if( (*dmn_cmn_out)[idx_dmn_out].id==dmn_cmn[idx_dmn].id){
+ dmn_flg=True;
+ break;
+ } /* Match by ID */
+ } /* Loop constructed array of output dimensions to see if already inserted */
+
+ /* If this dimension is not in output array */
+ if(!dmn_flg){
+
+ int nbr_dmn_out_tmp = *nbr_dmn_cmn_out;
+
+ /* Add one more element to array */
+ (*dmn_cmn_out)=(dmn_cmn_sct *)nco_realloc((*dmn_cmn_out),(nbr_dmn_out_tmp+1)*sizeof(dmn_cmn_sct));
+
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].id=dmn_cmn[idx_dmn].id;
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].nm_fll=(char *)strdup(dmn_cmn[idx_dmn].nm_fll);
+ strcpy((*dmn_cmn_out)[nbr_dmn_out_tmp].nm,dmn_cmn[idx_dmn].nm);
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].dmn_cnt=dmn_cmn[idx_dmn].dmn_cnt;
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].is_rec_dmn=dmn_cmn[idx_dmn].is_rec_dmn;
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].NON_HYP_DMN=dmn_cmn[idx_dmn].NON_HYP_DMN;
+ (*dmn_cmn_out)[nbr_dmn_out_tmp].sz=dmn_cmn[idx_dmn].sz;
+
+ nbr_dmn_out_tmp++;
+ *nbr_dmn_cmn_out=nbr_dmn_out_tmp;
+
+ if(nco_dbg_lvl_get() == nco_dbg_old){
+ (void)fprintf(stdout,"%s: DEBUG %s Inserted dimension #%d to output list\n",nco_prg_nm_get(),fnc_nm,
+ dmn_cmn[idx_dmn].id);
+ }
+
+ } /* If this dimension is not in output array */
+ } /* Loop over each dimension in variable */
+ } /* If output dimensions array exists */
+
/* Duplicate netCDF4 settings when possible */
if(fl_fmt == NC_FORMAT_NETCDF4 || fl_fmt == NC_FORMAT_NETCDF4_CLASSIC){
/* Deflation */
@@ -4724,7 +4949,7 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
strcpy(dmn_cmn[0].nm,rec_dmn_nm);
/* Define full name */
dmn_cmn[0].nm_fll=nco_bld_nm_fll(var_trv->grp_nm_fll,rec_dmn_nm);
- /* Move up to make room for inserted dimension at 0 index */
+ /* Move up to make room for inserted dimension at 0 index */
for(int idx_dmn=0;idx_dmn<nbr_dmn_var_out;idx_dmn++) dmn_cmn[idx_dmn+1]=dmn_cmn_tmp[idx_dmn];
} /* !ncecat */
@@ -4774,6 +4999,10 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
/* Free locally allocated space */
if(rec_dmn_nm_mlc) rec_dmn_nm_mlc=(char *)nco_free(rec_dmn_nm_mlc);
+ dmn_in_id_var=(int *)nco_free(dmn_in_id_var);
+ dmn_idx_in_out=(int *)nco_free(dmn_idx_in_out);
+ dmn_out_id_tmp=(int *)nco_free(dmn_out_id_tmp);
+
return var_out_id;
} /* end nco_cpy_var_dfn_trv() */
@@ -4784,10 +5013,11 @@ nco_dmn_swap /* [fnc] Swap dimensions */
dmn_cmn_sct *dmn_cmn, /* I/O [sct] Dimension structure array */
const int nbr_dmn) /* I [nbr] Number of dimensions (size of above array) */
{
- dmn_cmn_sct dmn_cmn_tmp;
int dmn_nm_1_idx;
int dmn_nm_2_idx;
+ dmn_cmn_sct dmn_cmn_tmp;
+
/* Loop dimensions */
for(int idx_dmn=0;idx_dmn<nbr_dmn;idx_dmn++){
/* Find index of name 1 */
@@ -4811,7 +5041,6 @@ nco_dmn_swap /* [fnc] Swap dimensions */
} /* nco_dmn_swap */
-
void
nco_dfn_dmn /* [fnc] Define dimension size and ID in array */
(const char * const dmn_nm, /* I [sng] Name of dimension */
@@ -5086,9 +5315,8 @@ nco_var_dmn_rdr_mtd_trv /* [fnc] Determine and set new dimensional
/* Loop dimensions of to search variable */
for(int idx_dmn=0;idx_dmn<var_trv_mrk.nbr_dmn;idx_dmn++){
- /* Match name */
- if(strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,var_trv.rec_dmn_nm_out) == 0){
-
+ /* Match name */
+ if(!strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,var_trv.rec_dmn_nm_out)){
NEEDS_REORDER=True;
break;
} /* Match name */
@@ -5101,7 +5329,6 @@ nco_var_dmn_rdr_mtd_trv /* [fnc] Determine and set new dimensional
--- using the found index of processed idx_var_prc_out
--- using the search index of GTT idx_var_mrk */
-
/* Find the index of processed variables that corresponds to the found GTT variable */
nco_var_prc_idx_trv(var_trv_mrk.nm_fll,var_prc_out,nbr_var_prc,&idx_var_prc_out);
@@ -5224,24 +5451,17 @@ nco_var_dmn_rdr_mtd_trv /* [fnc] Determine and set new dimensional
dmn_trv_sct *dmn_trv;
- /* Match name */
- if(strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,rec_dmn_nm_out) == 0){
-
- /* ...store the name of the record dimension on output... */
+ /* Store name of record dimension on output */
+ if(!strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,rec_dmn_nm_out))
trv_tbl->lst[idx_var_mrk].rec_dmn_nm_out=(char *)strdup(rec_dmn_nm_out);
- } /* Match name */
-
/* Get unique dimension object from unique dimension ID, in input list */
dmn_trv=nco_dmn_trv_sct(var_trv_mrk.var_dmn[idx_dmn].dmn_id,trv_tbl);
- /* Is record ? */
- if(dmn_trv->is_rec_dmn){
-
- /* ...store the name of the record dimension on output... */
- trv_tbl->lst[idx_var_mrk].rec_dmn_nm_out=(char *)strdup(rec_dmn_nm_out);
+ /* Is record? */
+ /* Store record dimension name on output */
+ if(dmn_trv->is_rec_dmn) trv_tbl->lst[idx_var_mrk].rec_dmn_nm_out=(char *)strdup(rec_dmn_nm_out);
- } /* Is record ? */
} /* Loop variable dimensions */
} /* Avoid same */
} /* Loop table */
@@ -5306,7 +5526,7 @@ nco_rdf_dmn_trv /* [fnc] Re-define dimension ordering */
for(int idx_dmn=0;idx_dmn<var_trv_mrk.nbr_dmn;idx_dmn++){
/* Match name */
- if(strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,var_trv.rec_dmn_nm_out) == 0){
+ if(!strcmp(var_trv_mrk.var_dmn[idx_dmn].dmn_nm,var_trv.rec_dmn_nm_out)){
*idx_var_mrk_out=idx_var_mrk;
return True;
@@ -5355,9 +5575,9 @@ nco_var_dmn_rdr_val_trv /* [fnc] Change dimension ordering of vari
long *var_in_cnt; /* [nbr] Number of valid elements in this dimension (including effects of stride and wrapping) */
long var_sz; /* [nbr] Number of elements (NOT bytes) in hyperslab (NOT full size of variable in input file!) */
- int dmn_idx_out_in[NC_MAX_DIMS]; /* [idx] Dimension correspondence, output->input (Stored in GTT ) */
+ int *dmn_idx_out_in; /* [idx] Dimension correspondence, output->input (Stored in GTT ) */
- nco_bool dmn_rvr_in[NC_MAX_DIMS];/* [flg] Reverse dimension (Stored in GTT ) */
+ nco_bool *dmn_rvr_in; /* [flg] Reverse dimension (Stored in GTT ) */
/* Loop table */
for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
@@ -5372,6 +5592,9 @@ nco_var_dmn_rdr_val_trv /* [fnc] Change dimension ordering of vari
/* Transfer dimension structures to be re-ordered *from* GTT */
+ dmn_idx_out_in=(int *)nco_malloc(var_trv.nbr_dmn*sizeof(int));
+ dmn_rvr_in=(nco_bool *)nco_malloc(var_trv.nbr_dmn*sizeof(nco_bool));
+
/* Loop variable dimensions */
for(int idx_dmn=0;idx_dmn<var_trv.nbr_dmn;idx_dmn++){
@@ -5508,6 +5731,9 @@ nco_var_dmn_rdr_val_trv /* [fnc] Change dimension ordering of vari
/* Begin Method 2: Loop over input dimensions */
/* End Method 2: Loop over input dimensions */
+ dmn_idx_out_in=(int *)nco_free(dmn_idx_out_in);
+ dmn_rvr_in=(nco_bool *)nco_free(dmn_rvr_in);
+
} /* Match by full variable name */
} /* Loop table */
@@ -5650,12 +5876,12 @@ nco_dmn_msa_tbl /* [fnc] Update all GTT dimensions with hy
const char fnc_nm[]="nco_dmn_msa_tbl()"; /* [sng] Function name */
- char var_nm[NC_MAX_NAME+1]; /* [sng] Variable name (local copy of object name) */
+ char var_nm[NC_MAX_NAME+1]; /* [sng] Variable name (local copy of object name) */
char *rec_dmn_nm=NULL; /* [sng] User-specified record dimension name */
char *rec_dmn_nm_mlc=NULL; /* [sng] Local copy of rec_dmn_nm_cst, which may be encoded */
- char dmn_nm[NC_MAX_NAME]; /* [sng] Dimension names */
+ char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension names */
- int dmn_in_id_var[NC_MAX_DIMS]; /* [id] Dimension IDs array for input variable */
+ int *dmn_in_id_var; /* [id] Dimension IDs array for input variable */
int var_in_id; /* [id] Variable ID */
int fl_fmt; /* [enm] Output file format */
int nbr_dmn_var; /* [nbr] Number of dimensions for variable */
@@ -5689,6 +5915,8 @@ nco_dmn_msa_tbl /* [fnc] Update all GTT dimensions with hy
/* Get type of variable and number of dimensions from input */
(void)nco_inq_var(grp_in_id,var_in_id,(char *)NULL,&var_typ,&nbr_dmn_var,(int *)NULL,(int *)NULL);
+ dmn_in_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get Program ID */
nco_prg_id=nco_prg_id_get();
@@ -5863,6 +6091,8 @@ nco_dmn_msa_tbl /* [fnc] Update all GTT dimensions with hy
} /* end if dimension is not yet defined */
} /* End of the very important dimension loop */
+ dmn_in_id_var=(int *)nco_free(dmn_in_id_var);
+
} /* end nco_dmn_msa_tbl() */
void
@@ -5992,6 +6222,7 @@ nco_dmn_avg_mk /* [fnc] Build dimensions to average(ncwa
(const int nc_id, /* I [id] netCDF file ID */
char **obj_lst_in, /* I [sng] User-specified list of dimension names (-a names) */
const int nbr_dmn_in, /* I [nbr] Total number of dimensions in input list (size of above array) */
+ const nco_bool flg_dmn_prc_usr_spc, /* I [flg] Processed dimensions specified on command line */
const nco_bool flg_rdd, /* I [flg] Retain degenerate dimensions */
const trv_tbl_sct * const trv_tbl, /* I [sct] GTT (Group Traversal Table) */
dmn_sct ***dmn_avg, /* O [sct] Array of dimensions to average */
@@ -6039,18 +6270,21 @@ nco_dmn_avg_mk /* [fnc] Build dimensions to average(ncwa
/* Convert pound signs (back) to commas */
nco_hash2comma(usr_sng);
- /* If usr_sng is regular expression ... */
- if(strpbrk(usr_sng,".*^$\\[]()<>+?|{}")){
- /* ... and regular expression library is present */
+ /* Look for regular expressions only when user explicitly specified dimensions */
+ if(flg_dmn_prc_usr_spc){
+ /* If usr_sng is regular expression ... */
+ if(strpbrk(usr_sng,".*^$\\[]()<>+?|{}")){
+ /* ... and regular expression library is present */
#ifdef NCO_HAVE_REGEX_FUNCTIONALITY
- /* fxm 20131217 TODO */
- (void)fprintf(stdout,"%s: ERROR: Sorry, wildcarding (extended regular expression matches to variables) is not implemented for -a option.\n",nco_prg_nm_get());
- nco_exit(EXIT_FAILURE);
+ /* fxm 20131217 TODO */
+ (void)fprintf(stdout,"%s: ERROR: Sorry, wildcarding (extended regular expression matches to dimension names) is not implemented for -a option.\n",nco_prg_nm_get());
+ nco_exit(EXIT_FAILURE);
#else /* !NCO_HAVE_REGEX_FUNCTIONALITY */
- (void)fprintf(stdout,"%s: ERROR: Sorry, wildcarding (extended regular expression matches to variables) was not built into this NCO executable, so unable to compile regular expression \"%s\".\nHINT: Make sure libregex.a is on path and re-build NCO.\n",nco_prg_nm_get(),usr_sng);
- nco_exit(EXIT_FAILURE);
+ (void)fprintf(stdout,"%s: ERROR: Sorry, wildcarding (extended regular expression matches to dimension names) was not built into this NCO executable, so unable to compile regular expression \"%s\".\nHINT: Make sure libregex.a is on path and re-build NCO.\n",nco_prg_nm_get(),usr_sng);
+ nco_exit(EXIT_FAILURE);
#endif /* !NCO_HAVE_REGEX_FUNCTIONALITY */
- } /* end if regular expression */
+ } /* end if regular expression */
+ } /* flg_dmn_prc_usr_spc */
/* Loop table */
for(unsigned int idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
@@ -6079,7 +6313,7 @@ nco_dmn_avg_mk /* [fnc] Build dimensions to average(ncwa
char *dmn_nm=trv_obj.var_dmn[idx_var_dmn].dmn_nm;
/* Must meet necessary flags */
- nco_bool pth_mth=nco_pth_mth(dmn_nm_fll,dmn_nm,usr_sng);
+ nco_bool pth_mth=nco_pth_mch(dmn_nm_fll,dmn_nm,usr_sng);
if(pth_mth){
flg_dmn_ins=False;
@@ -6150,9 +6384,7 @@ nco_dmn_avg_mk /* [fnc] Build dimensions to average(ncwa
if(nco_dbg_lvl_get() >= nco_dbg_var){
(void)fprintf(stdout,"%s: INFO dimensions to average: ",nco_prg_nm_get());
- for(int idx_dmn=0;idx_dmn<nbr_avg_dmn;idx_dmn++){
- (void)fprintf(stdout,"<%s>",(*dmn_avg)[idx_dmn]->nm);
- }
+ for(int idx_dmn=0;idx_dmn<nbr_avg_dmn;idx_dmn++) (void)fprintf(stdout,"<%s>",(*dmn_avg)[idx_dmn]->nm);
(void)fprintf(stdout,"\n");
} /* endif dbg */
@@ -6509,8 +6741,9 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
const int grp_lst_in_nbr, /* I [nbr] Number of groups in list */
char **var_lst_in, /* I [sng] User-specified list of variables */
const int var_xtr_nbr, /* I [nbr] Number of variables in list */
- const nco_bool EXTRACT_ALL_COORDINATES, /* I [flg] Process all coordinates */
+ const nco_bool EXTRACT_ALL_COORDINATES, /* I [flg] Process all coordinates */
const nco_bool flg_unn, /* I [flg] Select union of specified groups and variables */
+ const nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
const nco_bool EXCLUDE_INPUT_LIST, /* I [flg] Exclude rather than extract groups and variables specified with -v */
const nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
const int nco_pck_plc, /* I [enm] Packing policy */
@@ -6580,10 +6813,10 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
if(aux_nbr) (void)nco_bld_crd_aux(nc_id,trv_tbl);
/* Check -v and -g input names and create extraction list */
- (void)nco_xtr_mk(grp_lst_in,grp_lst_in_nbr,var_lst_in,var_xtr_nbr,EXTRACT_ALL_COORDINATES,flg_unn,trv_tbl);
+ (void)nco_xtr_mk(grp_lst_in,grp_lst_in_nbr,var_lst_in,var_xtr_nbr,EXCLUDE_INPUT_LIST,EXTRACT_ALL_COORDINATES,flg_unn,trv_tbl);
/* Change included variables to excluded variables */
- if(EXCLUDE_INPUT_LIST) (void)nco_xtr_xcl(trv_tbl);
+ if(EXCLUDE_INPUT_LIST) (void)nco_xtr_xcl(GRP_XTR_VAR_XCL,trv_tbl);
/* Add all coordinate variables to extraction list */
if(EXTRACT_ALL_COORDINATES) (void)nco_xtr_crd_add(trv_tbl);
@@ -6616,17 +6849,13 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
/* Build ensembles */
if(nco_prg_id_get() == ncge) (void)nco_bld_nsm(nc_id,True,CNV_CCM_CCSM_CF,nco_pck_plc,trv_tbl);
-
if(nco_prg_id_get() == ncbo) (void)nco_bld_nsm(nc_id,False,CNV_CCM_CCSM_CF,nco_pck_plc,trv_tbl);
/* Check valid input (limits) */
if(lmt_nbr) (void)nco_chk_dmn_in(lmt_nbr,lmt,flg_dne,trv_tbl);
/* Free limits */
- if(lmt_nbr){
- for(int idx=0;idx<lmt_nbr;idx++) lmt[idx]=nco_lmt_free(lmt[idx]);
- lmt=(lmt_sct **)nco_free(lmt);
- } /* !lmt_nbr */
+ if(lmt_nbr > 0) lmt=nco_lmt_lst_free(lmt,lmt_nbr);
if(nco_dbg_lvl_get() == nco_dbg_old) trv_tbl_prn_flg_xtr(fnc_nm,trv_tbl);
@@ -6637,7 +6866,7 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
void
nco_chk_dmn /* [fnc] Check valid dimension names */
(const int lmt_nbr, /* I [nbr] number of dimensions with limits */
- nco_dmn_dne_t * flg_dne) /* I [lst] Flag to check if input dimension -d "does not exist" */
+ nco_dmn_dne_t * flg_dne) /* I/O [lst] Flag to check if input dimension -d "does not exist" */
{
/* Check if all input -d dimensions were found */
for(int lmt_idx=0;lmt_idx<lmt_nbr;lmt_idx++){
@@ -6652,17 +6881,17 @@ nco_chk_dmn /* [fnc] Check valid dimension names */
void
nco_chk_dmn_in /* [fnc] Check input dimensions */
-(int lmt_nbr, /* I [nbr] Number of user-specified dimension limits */
- lmt_sct **lmt, /* I [sct] Structure comming from nco_lmt_prs() */
- nco_dmn_dne_t **dne_lst, /* I/O [lst] Flag to check if input dimension -d "does not exist" */
+(const int lmt_nbr, /* I [nbr] Number of user-specified dimension limits */
+ CST_X_PTR_CST_PTR_CST_Y(lmt_sct,lmt), /* I [sct] List of user-specified dimension limits */
+ nco_dmn_dne_t ** const dne_lst, /* I/O [lst] Input dimension does not exist */
const trv_tbl_sct * const trv_tbl) /* I [sct] Traversal table */
{
- (*dne_lst)=(nco_dmn_dne_t *)nco_malloc(lmt_nbr*sizeof(nco_dmn_dne_t));
+ *dne_lst=(nco_dmn_dne_t *)nco_malloc(lmt_nbr*sizeof(nco_dmn_dne_t));
/* Be pessimistic and assume invalid user input */
for(int lmt_idx=0;lmt_idx<lmt_nbr;lmt_idx++) (*dne_lst)[lmt_idx].flg_dne=True;
- /* Loop input name list */
+ /* Loop over input names */
for(int lmt_idx=0;lmt_idx<lmt_nbr;lmt_idx++){
assert(lmt[lmt_idx]->nm);
@@ -6671,7 +6900,7 @@ nco_chk_dmn_in /* [fnc] Check input dimensions */
/* Match input relative name to dimension relative name */
for(unsigned int dmn_idx=0;dmn_idx<trv_tbl->nbr_dmn;dmn_idx++)
if(!strcmp(lmt[lmt_idx]->nm,trv_tbl->lst_dmn[dmn_idx].nm)) (*dne_lst)[lmt_idx].flg_dne=False;
- } /* Loop input name list */
+ } /* end for */
} /* nco_chk_dmn_in() */
void
@@ -7255,15 +7484,12 @@ nco_var_get_wgt_trv /* [fnc] Retrieve weighting or mask variab
} /* Loop over weights */
} /* Filter variables */
} /* Loop table */
-
}
return NULL;
} /* nco_var_get_wgt_trv() */
-
-
dmn_trv_sct * /* O [sct] Table dimension object */
nco_dmn_usr_sng /* [fnc] Parse input string and return table dimension object */
(const char * const usr_sng, /* I [sng] Object name */
@@ -7323,9 +7549,7 @@ nco_dmn_usr_sng /* [fnc] Parse input string and return tab
} /* Optional relative match */
/* Cases of not found and optional */
- if(usr_sng[0] == opt_chr){
- *is_opt=True;
- }
+ if(usr_sng[0] == opt_chr) *is_opt=True;
return NULL;
@@ -7347,24 +7571,14 @@ nco_obj_usr_sng /* [fnc] Parse input string and return tab
*is_opt=False;
/* Try absolute match */
-
- /* Loop table */
- for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++){
- /* Match absolute name */
- if(strcmp(usr_sng,trv_tbl->lst[tbl_idx].nm_fll) == 0){
+ for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++)
+ if(!strcmp(usr_sng,trv_tbl->lst[tbl_idx].nm_fll))
return &trv_tbl->lst[tbl_idx];
- } /* Match name */
- } /* Loop table */
/* Try relative match */
-
- /* Loop table */
- for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++){
- /* Match relative name */
- if(strcmp(usr_sng,trv_tbl->lst[tbl_idx].nm) == 0){
- return &trv_tbl->lst[tbl_idx];
- } /* Match name */
- } /* Loop table */
+ for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++)
+ if(!strcmp(usr_sng,trv_tbl->lst[tbl_idx].nm))
+ return &trv_tbl->lst[tbl_idx];
/* Try optional absolute match */
@@ -7393,9 +7607,7 @@ nco_obj_usr_sng /* [fnc] Parse input string and return tab
} /* Optional relative match */
/* Cases of not found and optional */
- if(usr_sng[0] == opt_chr){
- *is_opt=True;
- }
+ if(usr_sng[0] == opt_chr) *is_opt=True;
return NULL;
@@ -7437,7 +7649,6 @@ nco_aed_prc_grp /* [fnc] Process attributes in groups */
} /* nco_aed_prc_grp() */
-
void
nco_aed_prc_glb /* [fnc] Process attributes in root group */
(const int nc_id, /* I [id] netCDF file ID */
@@ -7690,10 +7901,11 @@ nco_var_has_cf /* [fnc] Variable has CF-compliant informa
/* Detect associated coordinates specified by CF "bounds" or "coordinates" convention for single variable
http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.1/cf-conventions.html#coordinate-system */
- char **cf_lst; /* [sng] 1D array of list elements */
- char att_nm[NC_MAX_NAME]; /* [sng] Attribute name */
const char dlm_sng[]=" "; /* [sng] Delimiter string */
+ char **cf_lst; /* [sng] 1D array of list elements */
+ char att_nm[NC_MAX_NAME+1]; /* [sng] Attribute name */
+
int grp_id; /* [id] Group ID */
int nbr_att; /* [nbr] Number of attributes */
int nbr_cf; /* [nbr] Number of coordinates specified in "bounds" or "coordinates" attribute */
@@ -7941,8 +8153,6 @@ nco_lmt_aux_tbl /* [fnc] Apply limits to variable in table
return;
} /* nco_lmt_aux_tbl() */
-
-
void
nco_lmt_std_att_lat_lon /* [fnc] Apply limits to variable in table that contains 'standard_name' attribute "latitude" */
(const int nc_id, /* I [ID] netCDF file ID */
@@ -7978,8 +8188,6 @@ nco_lmt_std_att_lat_lon /* [fnc] Apply limits to variable in table
return;
} /* nco_lmt_std_att_lat_lon() */
-
-
void
nco_lmt_aux /* [fnc] Apply auxiliary -X limits (Auxiliary function called by different functions ) */
(const int nc_id, /* I [ID] netCDF file ID */
@@ -8342,6 +8550,7 @@ nco_dmn_malloc /* [fnc] Inquire about number of dimension
/* Obtain dimensions IDs for group */
(void)nco_inq_dimids(grp_id,&nbr_dmn,dmn_ids,flg_prn);
+
/* Export number of dimensions */
*dmn_nbr=nbr_dmn;
@@ -8357,9 +8566,10 @@ nco_prn_var /* [fnc] Print variable (debug only) */
int grp_id;
int var_id;
- nc_type var_typ;
int nbr_dmn;
+ nc_type var_typ;
+
/* Loop table */
for(unsigned int idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
@@ -8407,11 +8617,13 @@ nco_dmn_lmt /* [fnc] Convert a lmt_sct array to dmn_s
} /* end nco_dmn_lmt() */
-
void
nco_prn_nsm /* [fnc] Print ensembles */
(const trv_tbl_sct * const trv_tbl) /* I [sct] Traversal table */
{
+
+ if (!trv_tbl->nsm_nbr) return;
+
(void)fprintf(stdout,"%s: list of ensembles\n",nco_prg_nm_get());
for(int idx_nsm=0;idx_nsm<trv_tbl->nsm_nbr;idx_nsm++){
(void)fprintf(stdout,"%s: <%s>\n",nco_prg_nm_get(),trv_tbl->nsm[idx_nsm].grp_nm_fll_prn);
@@ -8445,8 +8657,6 @@ nco_prn_nsm /* [fnc] Print ensembles */
} /* nco_prn_nsm() */
-
-
void
nco_bld_nsm /* [fnc] Build ensembles */
(const int nc_id, /* I [id] netCDF file ID */
@@ -8603,20 +8813,20 @@ nco_bld_nsm /* [fnc] Build ensembles */
if(trv_tbl->nsm_nbr == 0) return;
/* Insert names in ensembles */
-
- /* Loop ensembles */
- for(int idx_nsm=0;idx_nsm<trv_tbl->nsm_nbr;idx_nsm++){
-
- /* Loop table */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- trv_sct trv=trv_tbl->lst[idx_tbl];
-
- /* Match group parent name with ensemble name */
- if(trv.nco_typ == nco_obj_typ_grp &&
- trv.grp_dpt > 1 &&
- trv.nbr_var > 0 &&
- strcmp(trv_tbl->nsm[idx_nsm].grp_nm_fll_prn,trv.grp_nm_fll_prn) == 0){
-
+
+ /* Loop ensembles */
+ for(int idx_nsm=0;idx_nsm<trv_tbl->nsm_nbr;idx_nsm++){
+
+ /* Loop table */
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
+ trv_sct trv=trv_tbl->lst[idx_tbl];
+
+ /* Match group parent name with ensemble name */
+ if(trv.nco_typ == nco_obj_typ_grp &&
+ trv.grp_dpt > 1 &&
+ trv.nbr_var > 0 &&
+ strcmp(trv_tbl->nsm[idx_nsm].grp_nm_fll_prn,trv.grp_nm_fll_prn) == 0){
+
int mbr_nbr=trv_tbl->nsm[idx_nsm].mbr_nbr;
trv_tbl->nsm[idx_nsm].mbr_nbr++;
trv_tbl->nsm[idx_nsm].mbr=(nsm_grp_sct *)nco_realloc(trv_tbl->nsm[idx_nsm].mbr,(mbr_nbr+1)*sizeof(nsm_grp_sct));
@@ -8626,32 +8836,32 @@ nco_bld_nsm /* [fnc] Build ensembles */
/* Define offsets */
trv_tbl->nsm[idx_nsm].mbr_srt=0;
- trv_tbl->nsm[idx_nsm].mbr_end=trv_tbl->nsm[idx_nsm].mbr_nbr;
-
- int tpl_nbr=trv_tbl->nsm[idx_nsm].tpl_nbr;
-
- /* Insert members by builing name from group and template */
- for(int idx_tpl=0;idx_tpl<tpl_nbr;idx_tpl++){
-
+ trv_tbl->nsm[idx_nsm].mbr_end=trv_tbl->nsm[idx_nsm].mbr_nbr;
+
+ int tpl_nbr=trv_tbl->nsm[idx_nsm].tpl_nbr;
+
+ /* Insert members by builing name from group and template */
+ for(int idx_tpl=0;idx_tpl<tpl_nbr;idx_tpl++){
+
/* Define variable full name */
- char *var_nm_fll=nco_bld_nm_fll(trv.nm_fll,trv_tbl->nsm[idx_nsm].tpl_mbr_nm[idx_tpl]);
-
+ char *var_nm_fll=nco_bld_nm_fll(trv.nm_fll,trv_tbl->nsm[idx_nsm].tpl_mbr_nm[idx_tpl]);
+
/* Inquire if variable exists */
- trv_sct *var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl);
-
- if (!var_trv){
+ trv_sct *var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl);
+
+ if (!var_trv){
(void)fprintf(stderr,"%s: ERROR expected member ensemble <%s> does not exist\n",nco_prg_nm_get(),var_nm_fll);
- nco_exit(EXIT_FAILURE);
- }
-
- /* Mark variables as ensemble members */
-
+ nco_exit(EXIT_FAILURE);
+ }
+
+ /* Mark variables as ensemble members */
+
/* If not the first group member, then it's not a template */
if(mbr_nbr == 0) flg_nsm_tpl=True; else flg_nsm_tpl=False;
/* Mark ensemble member flag in table for "var_nm_fll" */
- (void)trv_tbl_mrk_nsm_mbr(var_nm_fll,flg_nsm_tpl,trv.grp_nm_fll_prn,trv_tbl);
-
+ (void)trv_tbl_mrk_nsm_mbr(var_nm_fll,flg_nsm_tpl,trv.grp_nm_fll_prn,trv_tbl);
+
/* Insert variable in table ensemble struct */
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nbr++;
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll=(char **)nco_realloc(trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll,trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nbr*sizeof(char *));
@@ -8663,37 +8873,37 @@ nco_bld_nsm /* [fnc] Build ensembles */
}
/* Free */
- var_nm_fll=(char *)nco_free(var_nm_fll);
-
- } /* Insert members by building name from group and template */
-
- /* Mark fixed templates as non extracted */
- if (flg_fix_xtr == True){
-
+ var_nm_fll=(char *)nco_free(var_nm_fll);
+
+ } /* Insert members by building name from group and template */
+
+ /* Mark fixed templates as non extracted */
+ if (flg_fix_xtr == True){
+
/* List of fixed templates */
for(int idx_skp=0;idx_skp<trv_tbl->nsm[idx_nsm].skp_nbr;idx_skp++){
/* Get variable */
- trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl);
-
+ trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl);
+
/* Define variable full name (using group name and relative name of fixed template) */
- char *skp_nm_fll=nco_bld_nm_fll(trv.nm_fll,var_trv->nm);
-
- /* Mark the skip names as non extracted variables */
- (void)trv_tbl_mrk_xtr(skp_nm_fll,False,trv_tbl);
-
- /*And its group too... */
- (void)trv_tbl_mrk_grp_xtr(trv.nm_fll,False,trv_tbl);
-
+ char *skp_nm_fll=nco_bld_nm_fll(trv.nm_fll,var_trv->nm);
+
+ /* Mark the skip names as non extracted variables */
+ (void)trv_tbl_mrk_xtr(skp_nm_fll,False,trv_tbl);
+
+ /*And its group too... */
+ (void)trv_tbl_mrk_grp_xtr(trv.nm_fll,False,trv_tbl);
+
/* Free */
- skp_nm_fll=(char *)nco_free(skp_nm_fll);
-
- } /* List of fixed templates */
-
- } /* Mark fixed templates as non extracted */
-
- } /* Match */
- } /* Loop table */
+ skp_nm_fll=(char *)nco_free(skp_nm_fll);
+
+ } /* List of fixed templates */
+
+ } /* Mark fixed templates as non extracted */
+
+ } /* Match */
+ } /* Loop table */
} /* Loop ensembles */
@@ -8741,7 +8951,7 @@ nco_nsm_dfn_wrt /* [fnc] Define OR write ensemble fixed var
trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl);
/* Define variable */
- if (flg_def == True) (void)nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,NULL,var_trv,trv_tbl);
+ if (flg_def == True) (void)nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,NULL,var_trv,NULL,0,trv_tbl);
/* Obtain group IDs using full group name */
(void)nco_inq_grp_full_ncid(nc_id,var_trv->grp_nm_fll,&grp_id_in);
@@ -8781,7 +8991,6 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
int *grp_ids; /* [id] Sub-group IDs array */
int mbr_srt; /* [nbr] Offset */
int rcd=NC_NOERR; /* [rcd] Return code */
- int dmn_id_var_2[NC_MAX_DIMS]; /* [ID] Dimensions IDs array for variable */
int nbr_dmn_var_2; /* [nbr] Number of dimensions for variable */
size_t grp_nm_lng; /* [nbr] Group name length */
@@ -8834,8 +9043,8 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
/* Export list of variable names for group */
(void)nco_grp_var_lst(nc_id,grp_nm_fll,&nm_lst_1,&nm_lst_1_nbr);
- int tpl_nbr=trv_tbl->nsm[idx_nsm].tpl_nbr;
-
+ int tpl_nbr=trv_tbl->nsm[idx_nsm].tpl_nbr;
+
int mbr_nbr=trv_tbl->nsm[idx_nsm].mbr_nbr;
trv_tbl->nsm[idx_nsm].mbr_nbr++;
trv_tbl->nsm[idx_nsm].mbr=(nsm_grp_sct *)nco_realloc(trv_tbl->nsm[idx_nsm].mbr,(mbr_nbr+1)*sizeof(nsm_grp_sct));
@@ -8844,9 +9053,9 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll=NULL;
/* Update offsets */
- trv_tbl->nsm[idx_nsm].mbr_end=trv_tbl->nsm[idx_nsm].mbr_nbr;
-
- /* Insert members by builing name from group and template */
+ trv_tbl->nsm[idx_nsm].mbr_end=trv_tbl->nsm[idx_nsm].mbr_nbr;
+
+ /* Insert members by builing name from group and template */
for(int idx_tpl=0;idx_tpl<tpl_nbr;idx_tpl++){
/* Loop variables in group */
@@ -8863,9 +9072,6 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
/* Get number of dimensions */
(void)nco_inq_var(grp_ids[idx_grp],idx_var,trv_tbl->nsm[idx_nsm].tpl_mbr_nm[idx_tpl],NULL,&nbr_dmn_var_2,(int *)NULL,(int *)NULL);
- /* Get dimension IDs for variable */
- (void)nco_inq_vardimid(grp_ids[idx_grp],idx_var,dmn_id_var_2);
-
/* Insert variable in table ensemble struct */
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nbr++;
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll=(char **)nco_realloc(trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll,trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nbr*sizeof(char *));
@@ -8876,7 +9082,6 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
trv_tbl->nsm[idx_nsm].mbr[mbr_nbr].var_nm_fll[idx_tpl]);
}
-
var_nm_fll=(char *)nco_free(var_nm_fll);
break;
@@ -8905,8 +9110,6 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
} /* nco_nsm_ncr() */
-
-
nco_bool /* O [flg] True for match found */
nco_prc_rel_mch /* [fnc] Relative match of object in table 1 to table 2 */
(const int nc_id_1, /* I [id] netCDF input-file ID from file 1 */
@@ -8968,7 +9171,6 @@ nco_prc_rel_mch /* [fnc] Relative match of object in tabl
} /* nco_prc_rel_mch() */
-
void
nco_cmn_var /* [fnc] Does the list of common names contain absolute/relative variables match? */
(const trv_tbl_sct * const trv_tbl_1, /* I [sct] GTT (Group Traversal Table) */
@@ -9097,8 +9299,8 @@ nco_cmn_nsm_var /* [fnc] Common variable exist in ensembl
/* Loop over variables in table 1 */
for(int idx_var=0;idx_var<trv_tbl_1->nsm[idx_nsm_1].mbr[idx_mbr_1].var_nbr;idx_var++){
- char *var_nm_fll=trv_tbl_1->nsm[idx_nsm_1].mbr[idx_mbr_1].var_nm_fll[idx_var];
-
+ char *var_nm_fll=trv_tbl_1->nsm[idx_nsm_1].mbr[idx_mbr_1].var_nm_fll[idx_var];
+
/* Get GTT object */
trv_sct *var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl_1);
@@ -9162,28 +9364,30 @@ nco_grp_brd /* [fnc] Group broadcasting (ncbo only) *
{
/* Purpose: Group broadcasting OR variable matching (ncbo only) */
- /* Broadcasting: file 1 contains multiple groups each with the variable v1, while file 2 contains v1
- only in its top-level (i.e., root) group. Then ncbo will replicate the group structure of file 1
- in the output file, file 3. Each group in file 3 contains the output of the corresponding
+ /* Broadcasting: file 1 contains multiple groups each with the variable v1, while file 2 contains v1
+ only in its top-level (i.e., root) group. Then ncbo will replicate the group structure of file 1
+ in the output file, file 3. Each group in file 3 contains the output of the corresponding
group in file 1 operating on the data in the single group in file 2. */
- const char fnc_nm[]="nco_grp_brd()"; /* [sng] Function name */
+ const char fnc_nm[]="nco_grp_brd()"; /* [sng] Function name */
- int nbr_cmn_nm=0; /* [nbr] Number of common entries */
+ int nbr_cmn_nm=0; /* [nbr] Number of common entries */
- nco_bool flg_cmn_abs; /* [flg] Is there a variable with same absolute path in both files? */
- nco_bool flg_cmn_rel; /* [flg] Is there a variable with same relative name */
- nco_bool flg_nsm_fl_1; /* [flg] File 1 contains ensemble members */
- nco_bool flg_nsm_fl_2; /* [flg] File 2 contains ensemble members */
- nco_bool flg_var_cmn; /* [flg] Common variable exists */
- nco_bool flg_var_cmn_rth; /* [flg] Common variable exists at root */
- nco_bool flg_grp_1; /* [flg] Use table 1 as template for group creation on True, otherwise use table 2 */
- nco_bool flg_nsm_att_1; /* [flg] "ensemble" attribute exists in table 1 */
- nco_bool flg_nsm_att_2; /* [flg] "ensemble" attribute exists in table 2 */
+ nco_bool flg_cmn_abs; /* [flg] Is there a variable with same absolute path in both files? */
+ nco_bool flg_cmn_rel; /* [flg] Is there a variable with same relative name */
+ nco_bool flg_nsm_fl_1; /* [flg] File 1 contains ensemble members */
+ nco_bool flg_nsm_fl_2; /* [flg] File 2 contains ensemble members */
+ nco_bool flg_var_cmn; /* [flg] Common variable exists */
+ nco_bool flg_var_cmn_rth; /* [flg] Common variable exists at root */
+ nco_bool flg_grp_1; /* [flg] Use table 1 as template for group creation on True, otherwise use table 2 */
+ nco_bool flg_nsm_att_1; /* [flg] "ensemble" attribute exists in table 1 */
+ nco_bool flg_nsm_att_2; /* [flg] "ensemble" attribute exists in table 2 */
- nco_cmn_t *cmn_lst=NULL; /* [lst] A list of common variable names */
- nm_lst_sct *var_nm=NULL; /* [lst] A list of variable names */
- nm_lst_sct *var_nm_rth=NULL; /* [lst] A list of variable names found at root */
+ nco_cmn_t *cmn_lst=NULL; /* [lst] A list of common variable names */
+ nm_lst_sct *var_nm=NULL; /* [lst] A list of variable names */
+ nm_lst_sct *var_nm_rth=NULL; /* [lst] A list of variable names found at root */
+ nm_lst_sct *nsm_grp_nm_fll_prn_1=NULL; /* I/O [sct] Array of ensemble paths read in the attributes */
+ nm_lst_sct *nsm_grp_nm_fll_prn_2=NULL; /* I/O [sct] Array of ensemble paths read in the attributes */
/* Sanity check */
assert(nco_prg_id_get() == ncbo);
@@ -9195,8 +9399,8 @@ nco_grp_brd /* [fnc] Group broadcasting (ncbo only) *
(void)nco_cmn_var(trv_tbl_1,trv_tbl_2,cmn_lst,nbr_cmn_nm,&flg_cmn_abs,&flg_cmn_rel);
/* Inquire if ensembles have "ensemble" attribute (meaning they were done by ncge already) */
- (void)nco_nsm_att(nc_id_1,trv_tbl_1,&flg_nsm_att_1);
- (void)nco_nsm_att(nc_id_2,trv_tbl_2,&flg_nsm_att_2);
+ (void)nco_nsm_att(nc_id_1,trv_tbl_1,&flg_nsm_att_1,&nsm_grp_nm_fll_prn_1);
+ (void)nco_nsm_att(nc_id_2,trv_tbl_2,&flg_nsm_att_2,&nsm_grp_nm_fll_prn_2);
/* There is a variable with same absolute path in both files. Do them and return */
if (flg_cmn_abs){
@@ -9231,13 +9435,35 @@ nco_grp_brd /* [fnc] Group broadcasting (ncbo only) *
nco_prn_nsm(trv_tbl_2);
}
- /* ncbo -O mdl_1.nc mdl_2.nc out.nc */
+ /* File 2 has ensembles in "special" places , defined in attributes */
+ if (flg_nsm_att_2){
- /* Use table 1 as template for group creation */
- flg_grp_1=True;
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)fprintf(stdout,"%s: DEBUG %s ensemble names read from attributes from file 2\n",nco_prg_nm_get(),fnc_nm);
+ for(int idx_nm=0;idx_nm<nsm_grp_nm_fll_prn_2->nbr;idx_nm++){
+ (void)fprintf(stdout,"%s: DEBUG %s <%s>\n",nco_prg_nm_get(),fnc_nm,
+ nsm_grp_nm_fll_prn_2->lst[idx_nm].nm);
+ }
+ }
- /* Process (define, write) variables belonging to ensembles in *both* files */
- (void)nco_prc_cmn_nsm(nc_id_1,nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,CNV_CCM_CCSM_CF,nco_op_typ,trv_tbl_1,trv_tbl_2,flg_grp_1,flg_dfn);
+ /* Use table 1 as template for group creation */
+ flg_grp_1=True;
+
+ /* Process (define, write) variables belonging to ensembles in *both* files (special attribute version) */
+ (void)nco_prc_cmn_nsm_att(nc_id_1,nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,CNV_CCM_CCSM_CF,nco_op_typ,trv_tbl_1,trv_tbl_2,flg_grp_1,flg_dfn,nsm_grp_nm_fll_prn_2);
+
+ /* File 2 has ensembles in the expected places */
+ } else {
+
+ /* ncbo -O mdl_1.nc mdl_2.nc out.nc */
+
+ /* Use table 1 as template for group creation */
+ flg_grp_1=True;
+
+ /* Process (define, write) variables belonging to ensembles in *both* files */
+ (void)nco_prc_cmn_nsm(nc_id_1,nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,CNV_CCM_CCSM_CF,nco_op_typ,trv_tbl_1,trv_tbl_2,flg_grp_1,flg_dfn);
+
+ } /* File 2 has ensembles in the expected places */
}else if(flg_nsm_fl_2 == False){
@@ -9351,6 +9577,17 @@ nco_grp_brd /* [fnc] Group broadcasting (ncbo only) *
var_nm_rth=(nm_lst_sct *)nco_free(var_nm_rth);
}
+ for(int idx_nm=0;idx_nm<nsm_grp_nm_fll_prn_2->nbr;idx_nm++){
+ nsm_grp_nm_fll_prn_2->lst[idx_nm].nm=(char *)nco_free(nsm_grp_nm_fll_prn_2->lst[idx_nm].nm);
+ }
+ nsm_grp_nm_fll_prn_2=(nm_lst_sct *)nco_free(nsm_grp_nm_fll_prn_2);
+
+ for(int idx_nm=0;idx_nm<nsm_grp_nm_fll_prn_1->nbr;idx_nm++){
+ nsm_grp_nm_fll_prn_1->lst[idx_nm].nm=(char *)nco_free(nsm_grp_nm_fll_prn_1->lst[idx_nm].nm);
+ }
+ nsm_grp_nm_fll_prn_1=(nm_lst_sct *)nco_free(nsm_grp_nm_fll_prn_1);
+
+
} /* nco_grp_brd() */
@@ -9439,21 +9676,21 @@ nco_prc_cmn_nsm /* [fnc] Process (define, write) variable
for(int idx_skp=0;idx_skp<trv_tbl_1->nsm[idx_nsm].skp_nbr;idx_skp++){
/* Get variable */
- trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_1);
-
+ trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_1);
+
/* Define variable full name (using group name and relative name of fixed template) */
- char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
-
+ char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
+
/* Get variable */
- trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_1);
-
- if (skp_trv){
-
- /* Define/write fixed variables (ncbo) */
- (void)nco_fix_dfn_wrt(nc_id_1,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_1,flg_dfn);
-
- }
-
+ trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_1);
+
+ if (skp_trv){
+
+ /* Define/write fixed variables (ncbo) */
+ (void)nco_fix_dfn_wrt(nc_id_1,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_1,flg_dfn);
+
+ }
+
} /* List of fixed templates */
} /* Loop group members */
@@ -9534,21 +9771,21 @@ nco_prc_nsm /* [fnc] Process (define, write) variable
for(int idx_skp=0;idx_skp<trv_tbl_1->nsm[idx_nsm].skp_nbr;idx_skp++){
/* Get variable */
- trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_1);
-
+ trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_1);
+
/* Define variable full name (using group name and relative name of fixed template) */
- char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
-
+ char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
+
/* Get variable */
- trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_1);
-
- if (skp_trv){
-
- /* Define/write fixed variables (ncbo) */
- (void)nco_fix_dfn_wrt(nc_id_1,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_1,flg_dfn);
-
- }
-
+ trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_1);
+
+ if (skp_trv){
+
+ /* Define/write fixed variables (ncbo) */
+ (void)nco_fix_dfn_wrt(nc_id_1,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_1,flg_dfn);
+
+ }
+
} /* List of fixed templates */
@@ -9622,20 +9859,20 @@ nco_prc_nsm /* [fnc] Process (define, write) variable
for(int idx_skp=0;idx_skp<trv_tbl_2->nsm[idx_nsm].skp_nbr;idx_skp++){
/* Get variable */
- trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_2->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_2);
-
+ trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_2->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_2);
+
/* Define variable full name (using group name and relative name of fixed template) */
- char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_2->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
-
+ char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_2->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
+
/* Get variable */
- trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_2);
-
- if (skp_trv){
-
- /* Define/write fixed variables (ncbo) */
- (void)nco_fix_dfn_wrt(nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_2,flg_dfn);
-
- }
+ trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_2);
+
+ if (skp_trv){
+
+ /* Define/write fixed variables (ncbo) */
+ (void)nco_fix_dfn_wrt(nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_2,flg_dfn);
+
+ }
} /* List of fixed templates */
/* Loop list of variables from other file */
@@ -9708,7 +9945,7 @@ nco_fix_dfn_wrt /* [fnc] Define/write fixed variables (nc
if(gpe) (void)nco_gpe_chk(grp_out_fll,trv->nm,&gpe_nm,&nbr_gpe_nm);
/* Define variable in output file */
- var_out_id= nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv,trv_tbl);
+ var_out_id= nco_cpy_var_dfn_trv(nc_id,nc_out_id,cnk,grp_out_fll,dfl_lvl,gpe,rec_dmn_nm,trv,NULL,0,trv_tbl);
/* Copy variable's attributes */
(void)nco_att_cpy(grp_id,grp_out_id,var_id,var_out_id,True);
@@ -9921,7 +10158,7 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
int grp_id; /* [id] Group ID */
int nbr_grp; /* [nbr] Number of sub-groups */
int *grp_ids; /* [id] Sub-group IDs array */
- int dmn_id_var[NC_MAX_DIMS]; /* [ID] Dimensions IDs array for variable */
+ int *dmn_id_var; /* [ID] Dimensions IDs array for variable */
int nbr_dmn_var; /* [nbr] Number of dimensions for variable */
int rcd=NC_NOERR; /* [rcd] Return code */
@@ -9952,13 +10189,11 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
}
}
-
/* Get number of sub-groups */
(void)nco_inq_grps(grp_id,&nbr_grp,(int *)NULL);
grp_ids=(int *)nco_malloc(nbr_grp*sizeof(int));
(void)nco_inq_grps(grp_id,(int *)NULL,grp_ids);
-
/* Loop sub-groups */
for(int idx_grp=0;idx_grp<nbr_grp;idx_grp++){
@@ -9980,7 +10215,7 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
int tpl_nbr=trv_tbl->nsm[idx_nsm].tpl_nbr;
- /* Loop templates */
+ /* Loop templates */
for(int idx_tpl=0;idx_tpl<tpl_nbr;idx_tpl++){
/* Obtain GTT check variable objects (for first member, index 0) */
@@ -10010,6 +10245,9 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
/* Get number of dimensions */
(void)nco_inq_var(grp_ids[idx_grp],idx_var,var_nm_lst[idx_var],NULL,&nbr_dmn_var,(int *)NULL,(int *)NULL);
+ /* Alloc dimension IDs array */
+ dmn_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
/* Get dimension IDs for variable */
(void)nco_inq_vardimid(grp_ids[idx_grp],idx_var,dmn_id_var);
@@ -10084,20 +10322,20 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
lmn_cnt*=dmn_cnt_gtt;
} /* For first file, GTT was built */
-
} /* Hyperslab */
} /* Loop dimensions */
+ /* Free dimension IDs array */
+ dmn_id_var=(int *)nco_free(dmn_id_var);
+
if(nco_dbg_lvl_get() >= nco_dbg_dev){
if (fl_idx == 0) (void)fprintf(stdout,"%s: DEBUG %s <%s> elements %ld\n",nco_prg_nm_get(),fnc_nm,var_trv->nm_fll,lmn_cnt);
}
var_nm_fll=(char *)nco_free(var_nm_fll);
-
break;
} /* Match relative name */
-
} /* Loop variables in group */
} /* Loop templates */
@@ -10113,41 +10351,379 @@ nco_chk_nsm /* [fnc] Check if ensembles are valid */
var_tpl_trv=(trv_sct **)nco_free(var_tpl_trv);
} /* Loop ensembles */
-
} /* nco_chk_nsm() */
void
-nco_nsm_att /* [fnc] Inquire if ensemble parent group has "ensemble" attribute (ncbo only) */
+nco_nsm_att /* [fnc] Inquire if ensemble parent group has "ensemble_source" attribute (ncbo only) */
(const int nc_id, /* I [id] netCDF file ID */
const trv_tbl_sct * const trv_tbl, /* I [sct] GTT (Group Traversal Table) */
- nco_bool *flg_nsm_att) /* I/O [flg] "ensemble" attribute exists */
+ nco_bool *flg_nsm_att, /* I/O [flg] "ensemble" attribute exists */
+ nm_lst_sct **nsm_grp_nm_fll_prn) /* I/O [sct] Array of ensemble paths read in the attributes */
{
/* Purpose: Inquire if ensemble parent group has "ensemble" attribute (ncbo only) */
- int grp_id; /* [id] Group ID */
- int rcd; /* [rcd] Return code */
+ int grp_id; /* [id] Group ID */
+ int rcd; /* [rcd] Return code */
+ int nbr_nm; /* [nbr] Number of names in list */
+
+ long att_sz;
nc_type att_typ; /* [nbr] Attribute type */
*flg_nsm_att=False;
- /* Loop ensemble group parents */
- for(int idx_nsm=0;idx_nsm<trv_tbl->nsm_nbr;idx_nsm++){
-
- /* Obtain output group ID using full group name */
- (void)nco_inq_grp_full_ncid(nc_id,trv_tbl->nsm[idx_nsm].grp_nm_fll_prn,&grp_id);
+ (*nsm_grp_nm_fll_prn)=(nm_lst_sct *)nco_malloc(sizeof(nm_lst_sct));
+ (*nsm_grp_nm_fll_prn)->nbr=0;
+ (*nsm_grp_nm_fll_prn)->lst=NULL; /* Must be NULL to nco_realloc() correct handling */
- /* Does attribute exist? */
- rcd=nco_inq_att_flg(grp_id,NC_GLOBAL,"ensemble",&att_typ,(long *)NULL);
- if(rcd == NC_NOERR){
- *flg_nsm_att=True;
+ nbr_nm=0;
- (void)fprintf(stdout,"%s: ATTRIBUTE ensemble <%s>\n",nco_prg_nm_get(),trv_tbl->nsm[idx_nsm].grp_nm_fll_prn);
+ /* Loop table */
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- }
+ /* Filter groups */
+ if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_grp){
+
+ trv_sct trv=trv_tbl->lst[idx_tbl];
+
+ /* Obtain output group ID using full group name */
+ (void)nco_inq_grp_full_ncid(nc_id,trv.grp_nm_fll,&grp_id);
+
+ /* Does attribute "ensemble_source" exist? (saved in ncge); string is hard coded and duplicated */
+ rcd=nco_inq_att_flg(grp_id,NC_GLOBAL,"ensemble_source",&att_typ,&att_sz);
+
+ /* Check retrun code */
+ if(rcd == NC_NOERR){
+ *flg_nsm_att=True;
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)fprintf(stdout,"%s: ATTRIBUTE ensemble_source in <%s>\n",nco_prg_nm_get(),trv.grp_nm_fll);
+ }
+
+ /* Add one more element to table */
+ (*nsm_grp_nm_fll_prn)->lst=(nm_sct *)nco_realloc((*nsm_grp_nm_fll_prn)->lst,(nbr_nm+1)*sizeof(nm_sct));
+
+ char *attr_sng=NULL_CEWI;
+
+ /* Get attribute */
+ attr_sng=(char *)nco_malloc((att_sz+1UL)*sizeof(char));
+
+ (void)nco_get_att(grp_id,NC_GLOBAL,"ensemble_source",attr_sng,att_typ);
+ attr_sng[att_sz]='\0';
+
+ /* Duplicate string into list */
+ (*nsm_grp_nm_fll_prn)->lst[nbr_nm].nm=strdup(attr_sng);
+
+ nbr_nm++;
+ (*nsm_grp_nm_fll_prn)->nbr=nbr_nm;
+
+ attr_sng=(char *)nco_free(attr_sng);
+ } /* Check retrun code */
+ } /* Filter groups */
+ } /* Loop table */
+} /* nco_nsm_att() */
+
+void
+nco_rad /* [fnc] Retain all dimensions */
+(const int nc_out_id, /* I [ID] netCDF output file ID */
+ int nbr_dmn_var_out, /* I [nbr] Number of dimensions for variable on output */
+ const dmn_cmn_sct * const dmn_cmn, /* I [sct] Dimension structure in output file */
+ const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
+{
+ /* Purpose: Retain all dimensions */
+
+ const char fnc_nm[]="nco_rad()"; /* [sng] Function name */
+
+ int grp_dmn_out_id; /* [id] Group ID where dimension visible to specified group is defined */
+ int dmn_id_out; /* [id] Dimension ID defined in outout group */
+
+ char *grp_dmn_out_fll; /* [sng] Group name of dimension in output */
+
+ /* Loop unique dimensions list */
+ for(unsigned idx_dmn_tbl=0;idx_dmn_tbl<trv_tbl->nbr_dmn;idx_dmn_tbl++){
+ dmn_trv_sct dmn_trv=trv_tbl->lst_dmn[idx_dmn_tbl];
+
+ nco_bool has_dmn=False;
+
+ /* Loop variable dimensions on output */
+ for(int idx_dmn=0;idx_dmn<nbr_dmn_var_out;idx_dmn++){
+
+ /* Match full name */
+ if(strcmp(dmn_trv.nm_fll,dmn_cmn[idx_dmn].nm_fll) == 0){
+
+ has_dmn=True;
+ break;
+ }
+ } /* Loop variable dimensions on output */
+
+ /* Dimension not found, make it */
+ if (has_dmn == False){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)fprintf(stdout,"%s: DEBUG %s making <%s> to output\n",nco_prg_nm_get(),fnc_nm,
+ dmn_trv.nm_fll);
+ }
+ grp_dmn_out_fll=(char *)strdup(dmn_trv.grp_nm_fll);
- } /* Loop ensemble group parents */
+ /* Test existence of group and create if not existent */
+ if(nco_inq_grp_full_ncid_flg(nc_out_id,grp_dmn_out_fll,&grp_dmn_out_id)){
+ nco_def_grp_full(nc_out_id,grp_dmn_out_fll,&grp_dmn_out_id);
+ }
+
+ /* Define dimension and obtain dimension ID */
+ (void)nco_def_dim(grp_dmn_out_id,dmn_trv.nm,dmn_trv.sz,&dmn_id_out);
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev){
+ (void)fprintf(stdout,"%s: DEBUG %s Defined dimension <%s><%s>#%d\n",nco_prg_nm_get(),fnc_nm,
+ grp_dmn_out_fll,dmn_trv.nm,dmn_id_out);
+ }
+
+ /* Memory management after defining current output dimension */
+ if(grp_dmn_out_fll) grp_dmn_out_fll=(char *)nco_free(grp_dmn_out_fll);
+
+ } /* Dimension not found, make it */
+ } /* Loop unique dimensions list */
+} /* nco_rad() */
+
+
+void
+nco_prc_cmn_nsm_att /* [fnc] Process (define, write) variables belonging to ensembles in both files (ncbo) */
+(const int nc_id_1, /* I [id] netCDF input-file ID */
+ const int nc_id_2, /* I [id] netCDF input-file ID */
+ const int nc_out_id, /* I [id] netCDF output-file ID */
+ const cnk_sct * const cnk, /* I [sct] Chunking structure */
+ const int dfl_lvl, /* I [enm] Deflate level [0..9] */
+ const gpe_sct * const gpe, /* I [sct] GPE structure */
+ gpe_nm_sct *gpe_nm, /* I/O [sct] GPE name duplicate check array */
+ int nbr_gpe_nm, /* I/O [nbr] Number of GPE entries */
+ const nco_bool CNV_CCM_CCSM_CF, /* I [flg] File adheres to NCAR CCM/CCSM/CF conventions */
+ const int nco_op_typ, /* I [enm] Operation type (command line -y) */
+ trv_tbl_sct * const trv_tbl_1, /* I/O [sct] GTT (Group Traversal Table) */
+ trv_tbl_sct * const trv_tbl_2, /* I/O [sct] GTT (Group Traversal Table) */
+ const nco_bool flg_grp_1, /* I [flg] Use table 1 as template for group creation on True, otherwise use table 2 */
+ const nco_bool flg_dfn, /* I [flg] Action type (True for define variables, False for write variables ) */
+ nm_lst_sct *nsm_grp_nm_fll_prn) /* I/O [sct] Array of ensemble paths read in the attributes */
+{
+ /* Purpose: Process (define, write) variables belonging to ensembles in *both* files (both files have ensembles)
+ special attribute ensemble version */
+
+ const char fnc_nm[]="nco_prc_cmn_nsm()"; /* [sng] Function name */
+
+ trv_sct *trv_1; /* [sct] Table object */
+ trv_sct *trv_2; /* [sct] Table object */
+
+ if(flg_grp_1){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_var) (void)fprintf(stdout,"%s: Processing ensembles from file 1\n",nco_prg_nm_get());
+
+ /* Loop ensembles */
+ for(int idx_nsm=0;idx_nsm<trv_tbl_1->nsm_nbr;idx_nsm++){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev) (void)fprintf(stdout,"%s: DEBUG %s <ensemble %d> <%s>\n",nco_prg_nm_get(),fnc_nm,idx_nsm,trv_tbl_1->nsm[idx_nsm].grp_nm_fll_prn);
+
+ /* Loop group members */
+ for(int idx_mbr=0;idx_mbr<trv_tbl_1->nsm[idx_nsm].mbr_nbr;idx_mbr++){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev) (void)fprintf(stdout,"%s: DEBUG %s \t <member %d> <%s>\n",nco_prg_nm_get(),fnc_nm,idx_mbr,trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll);
+
+ /* Loop variables */
+ for(int idx_var=0;idx_var<trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].var_nbr;idx_var++){
+
+ trv_1=NULL;
+ trv_2=NULL;
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev) (void)fprintf(stdout,"%s: DEBUG %s \t <variable %d> <%s>\n",nco_prg_nm_get(),fnc_nm,idx_var,trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].var_nm_fll[idx_var]);
+
+ /* Inquire existence of these objects in tables */
+ trv_1=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].var_nm_fll[idx_var],trv_tbl_1);
+ assert(trv_1);
+
+ /* For file 2, a list with names is argument */
+ for(int idx_nm=0;idx_nm<nsm_grp_nm_fll_prn->nbr;idx_nm++){
+
+ /* Match full name */
+ if(!strcmp(nsm_grp_nm_fll_prn->lst[idx_nm].nm,trv_1->grp_nm_fll_prn)){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_dev) (void)fprintf(stdout,"%s: DEBUG %s Found name for <%s>\n",nco_prg_nm_get(),fnc_nm,nsm_grp_nm_fll_prn->lst[idx_nm].nm);
+
+ /* Since we're using table 1 as template, for table 2 object has to be searched (using relative name and ensemble parent name) */
+ trv_2=trv_tbl_nsm_nm_att(trv_1->nm,nsm_grp_nm_fll_prn->lst[idx_nm].nm,trv_tbl_2);
+
+ /* Both variables exist */
+ if(trv_1 && trv_2){
+
+ if(nco_dbg_lvl_get() >= nco_dbg_var) (void)fprintf(stdout,"%s: INFO common variable to output <%s>\n",nco_prg_nm_get(),trv_1->nm_fll);
+ /* Process common object */
+ (void)nco_prc_cmn(nc_id_1,nc_id_2,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,CNV_CCM_CCSM_CF,(nco_bool)False,(dmn_sct **)NULL,(int)0,nco_op_typ,trv_1,trv_2,trv_tbl_1,trv_tbl_2,flg_grp_1,flg_dfn);
+ } /* Both variables exist */
+
+ break;
+
+ } /* Match full name */
+ } /* For file 2, a list with names is argument */
+ } /* Loop variables */
+
+ /* List of fixed templates */
+ for(int idx_skp=0;idx_skp<trv_tbl_1->nsm[idx_nsm].skp_nbr;idx_skp++){
+
+ /* Get variable */
+ trv_sct *var_trv=trv_tbl_var_nm_fll(trv_tbl_1->nsm[idx_nsm].skp_nm_fll[idx_skp],trv_tbl_1);
+
+ /* Define variable full name (using group name and relative name of fixed template) */
+ char *skp_nm_fll=nco_bld_nm_fll(trv_tbl_1->nsm[idx_nsm].mbr[idx_mbr].mbr_nm_fll,var_trv->nm);
+
+ /* Get variable */
+ trv_sct *skp_trv=trv_tbl_var_nm_fll(skp_nm_fll,trv_tbl_1);
+
+ /* Define/write fixed variables (ncbo) */
+ if (skp_trv) (void)nco_fix_dfn_wrt(nc_id_1,nc_out_id,cnk,dfl_lvl,gpe,gpe_nm,nbr_gpe_nm,skp_trv,trv_tbl_1,flg_dfn);
+
+ } /* List of fixed templates */
+ } /* Loop group members */
+ } /* Loop ensembles */
+ } /* !flg_grp_1 */
+
+} /* nco_prc_cmn_nsm_att() */
+
+void
+nco_prt_dmn /* [fnc] Print dimensions (debug) */
+(const int nc_id, /* I [ID] netCDF file ID */
+ const char * const grp_nm_fll, /* I [sng] Group name full */
+ const char * const var_nm, /* I [sng] Variable name relative */
+ const char * const var_nm_fll, /* I [sng] Variable name full */
+ trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
+{
+ /* Purpose: Print dimensions (debug) */
+
+ const char fnc_nm[]="nco_prt_dmn()"; /* [sng] Function name */
+
+ char dmn_nm_var[NC_MAX_NAME+1]; /* [sng] Dimension name for *variable* */
+
+ int *dmn_id_var; /* [ID] Dimensions IDs array for variable */
+
+ int grp_id; /* [ID] Group ID */
+ int nbr_dmn_var; /* [nbr] Number of dimensions associated with current matched variable */
+ int var_id; /* [ID] Variable ID */
+
+ long dmn_sz; /* [nbr] Dimension size */
+
+ /* Obtain group ID using full group name */
+ (void)nco_inq_grp_full_ncid(nc_id,grp_nm_fll,&grp_id);
+
+ /* Obtain variable ID using group ID */
+ (void)nco_inq_varid(grp_id,var_nm,&var_id);
+
+ /* Get number of dimensions for variable */
+ (void)nco_inq_varndims(grp_id,var_id,&nbr_dmn_var);
+
+ dmn_id_var=(int *)nco_malloc(nbr_dmn_var*sizeof(int));
+
+ /* Get dimension IDs for variable */
+ (void)nco_inq_vardimid(grp_id,var_id,dmn_id_var);
+
+ /* Loop over dimensions of variable */
+ for(int idx_var_dim=0;idx_var_dim<nbr_dmn_var;idx_var_dim++){
+
+ /* Get dimension name */
+ (void)nco_inq_dim(grp_id,dmn_id_var[idx_var_dim],dmn_nm_var,&dmn_sz);
+
+ (void)fprintf(stdout,"%s: DEBUG %s <%s><%s> #%d API size is %ld\n",nco_prg_nm_get(),fnc_nm,
+ var_nm_fll,dmn_nm_var,dmn_id_var[idx_var_dim],dmn_sz);
+
+ } /* Loop over dimensions of variable */
+
+ trv_sct *var_trv=NULL;
+
+ /* Obtain variable GTT object using full variable name */
+ var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl);
+
+ assert(var_trv);
+
+ /* Loop over dimensions of variable */
+ for(int idx_var_dim=0;idx_var_dim<var_trv->nbr_dmn;idx_var_dim++){
+
+ int dmn_id;
+
+ if (var_trv->var_dmn[idx_var_dim].crd){
+ dmn_sz=var_trv->var_dmn[idx_var_dim].crd->sz;
+ dmn_id=var_trv->var_dmn[idx_var_dim].crd->dmn_id;
+ }else if (var_trv->var_dmn[idx_var_dim].ncd) {
+ dmn_sz=var_trv->var_dmn[idx_var_dim].ncd->sz;
+ dmn_id=var_trv->var_dmn[idx_var_dim].ncd->dmn_id;
+ } else assert (0);
+
+ (void)fprintf(stdout,"%s: DEBUG %s <%s><%s> #%d table size is %ld\n",nco_prg_nm_get(),fnc_nm,
+ var_nm_fll,var_trv->var_dmn[idx_var_dim].dmn_nm_fll,dmn_id,dmn_sz);
+
+ } /* Loop over dimensions of variable */
+
+ dmn_id_var=(int *)nco_free(dmn_id_var);
+} /* nco_prt_dmn() */
+
+void
+nco_nsm_wrt_att /* [fnc] Save ncge metadata attribute */
+(const int nc_id, /* I [ID] netCDF input file ID */
+ const int out_id, /* I [ID] netCDF output file ID */
+ const gpe_sct * const gpe, /* I [sct] GPE structure */
+ trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
+{
+ /* Purpose: Write ensemble parent group full path as attribute value in attribute named "ensemble_source" */
+
+ char *grp_out_fll; /* [sng] Group name */
+
+ int grp_id; /* [ID] Group ID in input file */
+ int grp_out_id; /* [ID] Group ID in output file */
+
+ aed_sct aed; /* [sct] Structure containing information necessary to edit */
+
+ for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
+ trv_sct grp_trv=trv_tbl->lst[idx_tbl];
+
+ /* If object is group */
+ if(grp_trv.nco_typ == nco_obj_typ_grp){
+
+ /* Obtain group ID from netCDF API using full group name */
+ (void)nco_inq_grp_full_ncid(nc_id,grp_trv.grp_nm_fll,&grp_id);
+
+ if(grp_trv.flg_nsm_prn){
+
+ grp_out_fll=NULL;
+
+ /* Ensemble parent groups */
+ if(trv_tbl->nsm_sfx){
+ /* Define new name by appending suffix (e.g., /cesm + _avg) */
+ char *nm_fll_sfx=nco_bld_nsm_sfx(grp_trv.grp_nm_fll_prn,trv_tbl);
+ /* Use then delete new name */
+ if(gpe) grp_out_fll=nco_gpe_evl(gpe,nm_fll_sfx); else grp_out_fll=(char *)strdup(nm_fll_sfx);
+ nm_fll_sfx=(char *)nco_free(nm_fll_sfx);
+ }else{
+ if(gpe) grp_out_fll=nco_gpe_evl(gpe,grp_trv.grp_nm_fll_prn); else grp_out_fll=(char *)strdup(grp_trv.grp_nm_fll_prn);
+ } /* !nsm_sfx */
+
+ /* Obtain output group ID using full group name */
+ (void)nco_inq_grp_full_ncid(out_id,grp_out_fll,&grp_out_id);
+
+ aed.att_nm=strdup("ensemble_source");
+ aed.type=NC_CHAR;
+ aed.var_nm=NULL;
+ aed.id=NC_GLOBAL;
+ aed.sz=strlen(grp_out_fll);
+ aed.val.cp=(char *)nco_malloc((aed.sz+1L)*sizeof(char));
+ (void)strcpy(aed.val.cp,grp_out_fll);
+ aed.mode=aed_create;
+
+ /* Create attribute to note ensenmble average */
+ (void)nco_aed_prc(grp_out_id,NC_GLOBAL,aed);
+
+ if(aed.att_nm) aed.att_nm=(char *)nco_free(aed.att_nm);
+ if(aed.val.cp) aed.val.cp=(char *)nco_free(aed.val.cp);
+
+ /* Memory management after current extracted group */
+ if(grp_out_fll) grp_out_fll=(char *)nco_free(grp_out_fll);
+ } /* !flg_nsm_prn */
-} /* nco_nsm_att() */
\ No newline at end of file
+ } /* end if group and flg_xtr */
+ } /* end loop to define group attributes */
+} /* nco_nsm_wrt_att() */
diff --git a/src/nco/nco_grp_utl.h b/src/nco/nco_grp_utl.h
index f1c3f16..d5de0d8 100644
--- a/src/nco/nco_grp_utl.h
+++ b/src/nco/nco_grp_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.h,v 1.494 2014/03/29 20:48:00 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.h,v 1.511 2014/05/21 20:39:29 zender Exp $ */
/* Purpose: Group utilities */
@@ -139,13 +139,15 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and cr
const int grp_xtr_nbr, /* I [nbr] Number of groups in list */
char **var_lst_in, /* I [sng] User-specified list of variables */
const int var_xtr_nbr, /* I [nbr] Number of variables in list */
+ const nco_bool EXCLUDE_INPUT_LIST, /* I [flg] Exclude rather than extract groups and variables */
const nco_bool EXTRACT_ALL_COORDINATES, /* I [flg] Process all coordinates */
const nco_bool flg_unn, /* I [flg] Select union of specified groups and variables */
trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
void
nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
-(trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
+(nco_bool GRP_XTR_VAR_XCL, /* [flg] Extract matching groups, exclude matching variables */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
void
nco_xtr_crd_add /* [fnc] Add all coordinates to extraction list */
@@ -211,7 +213,7 @@ nco_xtr_dmn_mrk /* [fnc] Mark extracted dimensions */
(trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
nco_bool
-nco_pth_mth /* [fnc] Name component in full path matches user string */
+nco_pth_mch /* [fnc] Name component in full path matches user string */
(char * const nm_fll, /* I [sng] Full name (path) */
char * const nm, /* I [sng] Name (relative) */
char * const usr_sng); /* [sng] User-supplied object name */
@@ -230,6 +232,7 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variable
const md5_sct * const md5, /* I [sct] MD5 configuration */
const nco_bool CPY_GRP_METADATA, /* I [flg] Copy group metadata (attributes) */
const nco_bool CPY_VAR_METADATA, /* I [flg] Copy variable metadata (attributes) */
+ const nco_bool RETAIN_ALL_DIMS, /* I [flg] Retain all dimensions */
const int nco_pck_plc, /* I [enm] Packing policy */
const char * const rec_dmn_nm, /* I [sng] Record dimension name */
trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
@@ -418,6 +421,8 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in out
const gpe_sct * const gpe, /* I [sct] GPE structure */
const char * const rec_dmn_nm_cst, /* I [sng] User-specified record dimension, if any, to create or fix in output file */
trv_sct *var_trv, /* I/O [sct] Object to write (variable) */
+ dmn_cmn_sct **dmn_cmn_out, /* I/O [sct] List of all dimensions in output file (used for RETAIN_ALL_DIMS) */
+ int *nbr_dmn_cmn_out, /* I/O [sct] Number of all dimensions in output file (used for RETAIN_ALL_DIMS) */
trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
void
@@ -497,6 +502,7 @@ nco_dmn_avg_mk /* [fnc] Build dimensions to average(ncwa
(const int nc_id, /* I [id] netCDF file ID */
char **obj_lst_in, /* I [sng] User-specified list of dimension names (-a names without the - ) */
const int nbr_dmn_in, /* I [nbr] Total number of dimensions in input list (size of above array) */
+ const nco_bool flg_dmn_prc_usr_spc, /* I [flg] Processed dimensions specified on command line */
const nco_bool flg_rdd, /* I [flg] Retain degenerate dimensions */
const trv_tbl_sct * const trv_tbl, /* I [sct] GTT (Group Traversal Table) */
dmn_sct ***dmn_avg, /* O [sct] Array of dimensions to average */
@@ -544,6 +550,7 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
const int var_xtr_nbr, /* I [nbr] Number of variables in list */
const nco_bool EXTRACT_ALL_COORDINATES, /* I [flg] Process all coordinates */
const nco_bool flg_unn, /* I [flg] Select union of specified groups and variables */
+ const nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
const nco_bool EXCLUDE_INPUT_LIST, /* I [flg] Exclude rather than extract groups and variables specified with -v */
const nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
const int nco_pck_plc, /* I [enm] Packing policy */
@@ -644,9 +651,9 @@ nco_chk_dmn /* [fnc] Check valid dimension names */
void
nco_chk_dmn_in /* [fnc] Check input dimensions */
-(int lmt_nbr, /* I [nbr] Number of user-specified dimension limits */
- lmt_sct **lmt, /* I [sct] Structure comming from nco_lmt_prs() */
- nco_dmn_dne_t **dne_lst, /* I/O [lst] Flag to check if input dimension -d "does not exist" */
+(const int lmt_nbr, /* I [nbr] Number of user-specified dimension limits */
+ CST_X_PTR_CST_PTR_CST_Y(lmt_sct,lmt), /* I [sct] List of user-specified dimension limits */
+ nco_dmn_dne_t ** const dne_lst, /* I/O [lst] Input dimension does not exist */
const trv_tbl_sct * const trv_tbl); /* I [sct] Traversal table */
nco_bool /* O [flg] True if variable 1 is in scope of variable 2 */
@@ -733,8 +740,6 @@ void
nco_prn_nsm /* [fnc] Print ensembles */
(const trv_tbl_sct * const trv_tbl); /* I [sct] Traversal table */
-
-
void
nco_bld_nsm /* [fnc] Build ensembles */
(const int nc_id, /* I [id] netCDF file ID */
@@ -758,7 +763,6 @@ nco_nsm_ncr /* [fnc] Increase ensembles (more than 1 f
(const int nc_id, /* I [id] netCDF file ID */
trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
-
nco_bool /* O [flg] True for match found */
nco_prc_rel_mch /* [fnc] Relative match of object in table 1 to table 2 */
(const int nc_id_1, /* I [id] netCDF input-file ID from file 1 */
@@ -778,7 +782,6 @@ nco_prc_rel_mch /* [fnc] Relative match of object in tabl
trv_tbl_sct * const trv_tbl_2, /* I/O [sct] GTT (Group Traversal Table) */
const nco_bool flg_dfn); /* I [flg] Action type (True for define variables, False when write variables ) */
-
void
nco_cmn_var /* [fnc] Does the list of common names contain absolute variables match? */
(const trv_tbl_sct * const trv_tbl_1, /* I [sct] GTT (Group Traversal Table) */
@@ -788,7 +791,6 @@ nco_cmn_var /* [fnc] Does the list of common names co
nco_bool *flg_cmn_abs, /* I/O [flg] Does the list of common names contain absolute variables match? */
nco_bool *flg_cmn_rel); /* I/O [flg] Does the list of common names contain relative variables match? */
-
void
nco_prc_cmn_var_nm_fll /* [fnc] Process (define, write) absolute variables in both files (same path) (ncbo) */
(const int nc_id_1, /* I [id] netCDF input-file ID */
@@ -839,7 +841,6 @@ nco_grp_brd /* [fnc] Group broadcasting (ncbo only) *
trv_tbl_sct * const trv_tbl_2, /* I/O [sct] GTT (Group Traversal Table) */
const nco_bool flg_dfn); /* I [flg] Action type (True for define variables, False for write variables ) */
-
void
nco_cmn_nsm_var /* [fnc] Common variable exist in ensembles (ncbo only) */
(nco_bool *flg_var_cmn, /* I/O [flg] Common variable exists */
@@ -866,7 +867,6 @@ nco_prc_cmn_nsm /* [fnc] Process (define, write) variable
const nco_bool flg_grp_1, /* I [flg] Use table 1 as template for group creation on True, otherwise use table 2 */
const nco_bool flg_dfn); /* I [flg] Action type (True for define variables, False for write variables ) */
-
void
nco_prc_nsm /* [fnc] Process (define, write) variables belonging to ensembles only in 1 file (ncbo) */
(const int nc_id_1, /* I [id] netCDF input-file ID */
@@ -898,7 +898,6 @@ nco_fix_dfn_wrt /* [fnc] Define/write fixed variables (nc
trv_tbl_sct * const trv_tbl, /* I/O [sct] GTT (Group Traversal Table) */
const nco_bool flg_dfn); /* I [flg] Action type (True for define variables, False when write variables ) */
-
nco_bool /* O [flg] True for match found */
nco_rel_mch /* [fnc] Relative match of object in table 1 to table 2 */
(trv_sct * var_trv, /* I [sct] Table variable object (can be from table 1 or 2) */
@@ -906,7 +905,6 @@ nco_rel_mch /* [fnc] Relative match of object in tabl
const trv_tbl_sct * const trv_tbl_1, /* I [sct] GTT (Group Traversal Table) */
const trv_tbl_sct * const trv_tbl_2); /* I [sct] GTT (Group Traversal Table) */
-
void
nco_prc_rel_cmn_nm /* [fnc] Process common relative objects from a common mames list (ncbo only) */
(const int nc_id_1, /* I [id] netCDF input-file ID */
@@ -925,7 +923,6 @@ nco_prc_rel_cmn_nm /* [fnc] Process common relative objects
const int nbr_cmn_nm, /* I [nbr] Number of common names entries */
const nco_bool flg_dfn); /* I [flg] Action type (True for define variables, False when write variables ) */
-
void
nco_chk_nsm /* [fnc] Check if ensembles are valid */
(const int in_id, /* I [id] netCDF input-file ID of current file, starting with first */
@@ -936,8 +933,48 @@ void
nco_nsm_att /* [fnc] Inquire if ensemble parent group has "ensemble" attribute (ncbo only) */
(const int nc_id, /* I [id] netCDF file ID */
const trv_tbl_sct * const trv_tbl, /* I [sct] GTT (Group Traversal Table) */
- nco_bool *flg_nsm_att); /* I/O [flg] "ensemble" attribute exists */
+ nco_bool *flg_nsm_att, /* I/O [flg] "ensemble" attribute exists */
+ nm_lst_sct **nsm_grp_nm_fll_prn); /* I/O [sct] Array of ensemble paths read in the attributes */
+
+void
+nco_rad /* [fnc] Retain all dimensions */
+(const int nc_out_id, /* I [ID] netCDF output file ID */
+ int nbr_dmn_var_out, /* I [nbr] Number of dimensions for variable on output */
+ const dmn_cmn_sct * const dmn_cmn, /* I [sct] Dimension structure in output file */
+ const trv_tbl_sct * const trv_tbl); /* I [sct] GTT (Group Traversal Table) */
+void
+nco_prc_cmn_nsm_att /* [fnc] Process (define, write) variables belonging to ensembles in both files (ncbo) */
+(const int nc_id_1, /* I [id] netCDF input-file ID */
+ const int nc_id_2, /* I [id] netCDF input-file ID */
+ const int nc_out_id, /* I [id] netCDF output-file ID */
+ const cnk_sct * const cnk, /* I [sct] Chunking structure */
+ const int dfl_lvl, /* I [enm] Deflate level [0..9] */
+ const gpe_sct * const gpe, /* I [sct] GPE structure */
+ gpe_nm_sct *gpe_nm, /* I/O [sct] GPE name duplicate check array */
+ int nbr_gpe_nm, /* I/O [nbr] Number of GPE entries */
+ const nco_bool CNV_CCM_CCSM_CF, /* I [flg] File adheres to NCAR CCM/CCSM/CF conventions */
+ const int nco_op_typ, /* I [enm] Operation type (command line -y) */
+ trv_tbl_sct * const trv_tbl_1, /* I/O [sct] GTT (Group Traversal Table) */
+ trv_tbl_sct * const trv_tbl_2, /* I/O [sct] GTT (Group Traversal Table) */
+ const nco_bool flg_grp_1, /* I [flg] Use table 1 as template for group creation on True, otherwise use table 2 */
+ const nco_bool flg_dfn, /* I [flg] Action type (True for define variables, False for write variables ) */
+ nm_lst_sct *nsm_grp_nm_fll_prn); /* I/O [sct] Array of ensemble paths read in the attributes */
+
+void
+nco_prt_dmn /* [fnc] Print dimensions (debug) */
+(const int nc_id, /* I [ID] netCDF file ID */
+ const char * const grp_nm_fll, /* I [sng] Group name full */
+ const char * const var_nm, /* I [sng] Variable name relative */
+ const char * const var_nm_fll, /* I [sng] Variable name full */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
+
+void
+nco_nsm_wrt_att /* [fnc] Save ncge metadata attribute */
+(const int nc_id, /* I [ID] netCDF input file ID */
+ const int out_id, /* I [ID] netCDF output file ID */
+ const gpe_sct * const gpe, /* I [sct] GPE structure */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/src/nco/nco_msa.c b/src/nco/nco_msa.c
index 8b16ec3..176d4f8 100644
--- a/src/nco/nco_msa.c
+++ b/src/nco/nco_msa.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_msa.c,v 1.243 2014/03/25 00:09:20 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_msa.c,v 1.246 2014/05/23 20:37:23 zender Exp $ */
/* Purpose: Multi-slabbing algorithm */
@@ -1258,7 +1258,7 @@ nco_cpy_var_val_mlt_lmt_trv /* [fnc] Copy variable data from input to ou
/* File format needed for decision tree and to enable netCDF4 features */
(void)nco_inq_format(out_id,&fl_fmt);
if(fl_fmt != NC_FORMAT_NETCDF4 && !nco_typ_nc3(var_typ_in)){
- if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO Autoconverting variable %s from netCDF4 type %s to netCDF3 type %s\n",nco_prg_nm_get(),var_nm,nco_typ_sng(var_typ_in),nco_typ_sng(nco_typ_nc4_nc3(var_typ_out)));
+ if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO Autoconverting variable %s from %s of netCDF4 type %s to netCDF3 type %s\n",nco_prg_nm_get(),var_nm,(nbr_dim > 0) ? "array" : "scalar",nco_typ_sng(var_typ_in),nco_typ_sng(nco_typ_nc4_nc3(var_typ_out)));
var_typ_out=nco_typ_nc4_nc3(var_typ_in);
if(var_typ_in == NC_STRING && var_typ_out == NC_CHAR){
@@ -1267,7 +1267,7 @@ nco_cpy_var_val_mlt_lmt_trv /* [fnc] Copy variable data from input to ou
Too many other limits on string translation to list them all :)
This only handles plain strings */
if(var_out.sz > 1L){
- (void)fprintf(stdout,"%s: ERROR Unable to autoconvert. %s reports string variable %s contains %li strings. Autoconversion of string variables is currently limited to string variables that contain a single string, not an array of strings. And even single strings are currently translated incorrectly because each string is typically a distinct size, meaning a distinct phony dimension would need to be created for every single string and NCO is loathe to do that. Complaints? Let us know.\n [...]
+ (void)fprintf(stdout,"%s: ERROR Unable to autoconvert. %s reports string variable %s is an array of %li strings. Autoconversion of string variables is currently limited to scalar string variables (that contain a single string), and does not work on arrays of strings. Even single strings are currently translated incorrectly because each string is typically a distinct size, meaning a distinct phony dimension would need to be created for every single string and NCO is loathe to do that. [...]
nco_exit(EXIT_FAILURE);
} /* endif err */
diff --git a/src/nco/nco_mss_val.c b/src/nco/nco_mss_val.c
index bf128d6..31ecaec 100644
--- a/src/nco/nco_mss_val.c
+++ b/src/nco/nco_mss_val.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mss_val.c,v 1.53 2013/12/31 05:14:02 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_mss_val.c,v 1.55 2014/05/27 02:55:26 zender Exp $ */
/* Purpose: Missing value utilities */
@@ -34,7 +34,9 @@ nco_mss_val_mk /* [fnc] Return default missing value for type type */
case NC_UINT: *mss_val.uip=NC_FILL_UINT; break;
case NC_INT64: *mss_val.i64p=NC_FILL_INT64; break;
case NC_UINT64: *mss_val.ui64p=NC_FILL_UINT64; break;
- case NC_STRING: *mss_val.sngp='\0'; break; /* fxm: NC_FILL_STRING? TODO nco839 */
+ /* 20140526: Changed to NC_FILL_STRING (available as of netCDF 4.3.1?) */
+ /* case NC_STRING: *mss_val.sngp='\0'; break; fxm: NC_FILL_STRING? TODO nco839 */
+ case NC_STRING: *mss_val.sngp=(char *)NC_FILL_STRING; break;
default: nco_dfl_case_nc_type_err(); break;
} /* end switch */
diff --git a/src/nco/nco_netcdf.c b/src/nco/nco_netcdf.c
index 3f88bf3..b178f51 100644
--- a/src/nco/nco_netcdf.c
+++ b/src/nco/nco_netcdf.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.c,v 1.234 2014/02/19 17:44:13 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.c,v 1.242 2014/05/20 17:17:03 zender Exp $ */
/* Purpose: NCO wrappers for netCDF C library */
@@ -9,6 +9,49 @@
#include "nco_netcdf.h" /* NCO wrappers for netCDF C library */
/* Utility routines not defined by netCDF library, but useful in working with it */
+char * /* O [sng] netCDF-compatible name */
+nm2sng_nc /* [fnc] Turn group/variable/dimension/attribute name into legal netCDF */
+(const char * const nm_sng) /* I [sng] Name to netCDF-ize */
+{
+ /* Purpose: Turn variable/dimension/attribute name into legal netCDF
+ Currently this means replacing forward slash by underscore and parentheses by underscore
+ NB: Calling function must free() memory containing netCDF-ized string
+ Weird file menagerie shows that:
+ NASA HDF4 CERES files (CER*) have forward slashes and spaces in attribute, dimension, and variable names: "Clear/layer/overlap percent coverages"
+ NASA HDF4 CERES files (CER*) have dimension names that begin with special characters: "(FOV) Footprints" */
+
+ char chr_sf='_'; /* [chr] Safe character */
+ char chr_1st; /* [chr] First character of name */
+ char *nm_nc; /* [sng] netCDF-compatible name */
+ char *nm_cpy; /* [sng] Moving pointer to netCDF-compatible name */
+
+ if(nm_sng == NULL) return NULL;
+
+ nm_cpy=nm_nc=(char *)strdup(nm_sng);
+
+ /* netCDF disallows forward slashes in element name. Replace slash by underscore. */
+ while(*nm_cpy){
+ if(*nm_cpy == '/') *nm_cpy=chr_sf;
+ nm_cpy++;
+ } /* end while */
+
+ /* netCDF requires first character of element name to be alphanumeric
+ Change first character that is special by underscore */
+ nm_cpy=nm_nc;
+ chr_1st=nm_cpy[0];
+ if(!isalnum(chr_1st)) nm_cpy[0]=chr_sf;
+ if(chr_1st == '('){
+ /* Change all parentheses to underscores */
+ while(*nm_cpy){
+ if(*nm_cpy == '(') *nm_cpy=chr_sf;
+ if(*nm_cpy == ')') *nm_cpy=chr_sf;
+ nm_cpy++;
+ } /* end while */
+ } /* endif parentheses*/
+
+ return nm_nc;
+} /* end nm2sng_nc() */
+
void
nco_err_exit /* [fnc] Print netCDF error message, routine name, then exit */
(const int rcd, /* I [enm] netCDF error code */
@@ -40,7 +83,7 @@ nco_err_exit /* [fnc] Print netCDF error message, routine name, then exit */
#ifdef ENABLE_NETCDF4
case NC_ENOTBUILT: (void)fprintf(stdout,"ERROR NC_ENOTBUILT Attempt to use feature that was not turned on when netCDF was built\nHINT: NC_ENOTBUILT errors occur only, in our experience, when NCO attempts to access an HDF4 (including HDF-EOS2) file. It is only possible to access HDF4 files from NCO if NCO is first re-linked to a version of netCDF configured with the --enable-hdf4 option, which itself must be linked to a version of HDF4 configured with the --disable-netcdf option. These [...]
#endif /* !ENABLE_NETCDF4 */
- case NC_ENOTNC: (void)fprintf(stdout,"ERROR NC_ENOTNC Not a netCDF file\nHINT: NC_ENOTNC errors can occur for many reasons. If your use case matches one of the four listed below, take the corrective action indicated:\n1. An NCO operator linked to the netCDF3 library attempts to read netCDF4 files. ");
+ case NC_ENOTNC: (void)fprintf(stdout,"ERROR NC_ENOTNC Not a netCDF file\nHINT: NC_ENOTNC errors can occur for many reasons. If your use-case matches one of the four listed below, take the corrective action indicated:\n1. An NCO operator linked to the netCDF3 library attempts to read netCDF4 (or HDF4 or HDF5) files. ");
#ifdef ENABLE_NETCDF4
(void)fprintf(stdout," However, this executable seems to have been built with the capability to manipulate netCDF4 files, so it is unlikely that this command failed only because the input datasets are netCDF4 format. Something else is going wrong. \n");
#else /* !ENABLE_NETCDF4 */
@@ -1063,9 +1106,28 @@ int
nco_def_dim(const int nc_id,const char * const dmn_nm,const long dmn_sz,int * const dmn_id)
{
/* Purpose: Wrapper for nc_def_dim() */
+ const char fnc_nm[]="nco_def_dim()";
int rcd;
rcd=nc_def_dim(nc_id,dmn_nm,(size_t)dmn_sz,dmn_id);
- if(rcd != NC_NOERR) nco_err_exit(rcd,"nco_def_dim()");
+ if(rcd == NC_EBADNAME){
+ char *nm_nc=NULL; /* [sng] netCDF-compatible name */
+ (void)fprintf(stdout,"INFO: %s reports input file dimension name \"%s\" contains illegal characters. ",fnc_nm,dmn_nm);
+ nm_nc=nm2sng_nc(dmn_nm);
+ rcd=nc_def_dim(nc_id,nm_nc,(size_t)dmn_sz,dmn_id);
+ /* Did sanitized name pass syntax checker? */
+ if(rcd == NC_NOERR){
+ (void)fprintf(stdout,"Defined dimension in output file with netCDF-safe name \"%s\" instead.\n",nm_nc);
+ }else if(rcd == NC_EBADNAME){
+ (void)fprintf(stdout,"Presumptively netCDF-safe name (created by nm2sng_nc()) \"%s\" also contains illegal characters. Exiting.",nm_nc);
+ nco_err_exit(rcd,fnc_nm);
+ }else if(rcd == NC_ENAMEINUSE){
+ rcd=nc_inq_dimid(nc_id,nm_nc,dmn_id);
+ (void)fprintf(stdout," Will return dimension ID = %d of existing netCDF-safe dimension name \"%s\".\n",*dmn_id,nm_nc);
+ } /* endif */
+ if(nm_nc) free(nm_nc);
+ assert(rcd == NC_NOERR || rcd == NC_EBADNAME || rcd == NC_ENAMEINUSE);
+ } /* endif */
+ if(rcd != NC_NOERR) nco_err_exit(rcd,fnc_nm);
return rcd;
} /* end nco_def_dim */
@@ -1099,8 +1161,13 @@ int
nco_inq_dim(const int nc_id,const int dmn_id,char *dmn_nm,long *dmn_sz)
{
/* Purpose: Wrapper for nc_inq_dim() */
+ const char fnc_nm[]="nco_inq_dim()";
int rcd;
rcd=nc_inq_dim(nc_id,dmn_id,dmn_nm,(size_t *)dmn_sz);
+ if(rcd == NC_EBADDIM){
+ (void)fprintf(stdout,"ERROR: %s reports requested dimension \"%s\" is not in input file\n",fnc_nm,dmn_nm);
+ nco_err_exit(rcd,fnc_nm);
+ } /* endif */
if(rcd != NC_NOERR) nco_err_exit(rcd,"nco_inq_dim()");
return rcd;
}/* end nco_inq_dim */
@@ -1162,8 +1229,27 @@ int
nco_def_var(const int nc_id,const char * const var_nm,const nc_type var_typ,const int dmn_nbr,const int * const dmn_id,int * const var_id)
{
/* Purpose: Wrapper for nc_def_var() */
+ const char fnc_nm[]="nco_def_var()";
int rcd;
rcd=nc_def_var(nc_id,var_nm,var_typ,dmn_nbr,dmn_id,var_id);
+ if(rcd == NC_EBADNAME){
+ char att_nm[]="hdf_name"; /* [sng] Attribute to preserve original name */
+ char *nm_nc=NULL; /* [sng] netCDF-compatible name */
+ (void)fprintf(stdout,"INFO: %s reports input file variable name \"%s\" contains illegal characters. ",fnc_nm,var_nm);
+ nm_nc=nm2sng_nc(var_nm);
+ rcd=nc_def_var(nc_id,nm_nc,var_typ,dmn_nbr,dmn_id,var_id);
+ /* Did sanitized name pass syntax checker? */
+ if(rcd == NC_NOERR){
+ (void)fprintf(stdout,"Defined variable in output file with netCDF-safe name \"%s\" instead. ",nm_nc);
+ }else if(rcd == NC_EBADNAME){
+ (void)fprintf(stdout,"Presumptively netCDF-safe name (created by nm2sng_nc()) \"%s\" also contains illegal characters. Exiting.",nm_nc);
+ nco_err_exit(rcd,fnc_nm);
+ } /* endif */
+ assert(rcd == NC_NOERR || rcd == NC_EBADNAME);
+ rcd=NCO_PUT_ATT_CHAR(nc_id,*var_id,att_nm,NC_CHAR,(size_t)strlen(var_nm),(const nco_char *)var_nm);
+ if(nm_nc) free(nm_nc);
+ if(rcd == NC_NOERR) (void)fprintf(stdout,"Original variable name is preserved in \"%s\" attribute.\n",att_nm);
+ } /* endif */
if(rcd != NC_NOERR) nco_err_exit(rcd,"nco_def_var()");
return rcd;
} /* end nco_def_var */
@@ -1417,7 +1503,15 @@ nco_inq_varid(const int nc_id,const char * const var_nm,int * const var_id)
const char fnc_nm[]="nco_inq_varid()";
int rcd;
rcd=nc_inq_varid(nc_id,var_nm,var_id);
- if(rcd == NC_ENOTVAR) (void)fprintf(stdout,"ERROR: %s reports requested variable \"%s\" is not in input file\n",fnc_nm,var_nm);
+ if(rcd == NC_ENOTVAR){
+ /* Variable of input name is not in file
+ Check if variable with netCDF-sanitized version of input name exists */
+ char *nm_nc=NULL; /* [sng] netCDF-compatible name */
+ nm_nc=nm2sng_nc(var_nm);
+ rcd=nc_inq_varid(nc_id,nm_nc,var_id);
+ if(rcd == NC_NOERR) (void)fprintf(stdout,"INFO: %s reports requested variable \"%s\" is not defined in file, though variable with netCDF-safe name \"%s\" is. Returning safe-named variable ID = %d.\n",fnc_nm,var_nm,nm_nc,*var_id); else (void)fprintf(stdout,"ERROR: %s reports requested variable \"%s\" is not defined in file\n",fnc_nm,var_nm);
+ if(nm_nc) free(nm_nc);
+ } /* endif */
if(rcd != NC_NOERR) nco_err_exit(rcd,fnc_nm);
return rcd;
} /* end nco_inq_varid */
diff --git a/src/nco/nco_netcdf.h b/src/nco/nco_netcdf.h
index 7b60704..2141603 100644
--- a/src/nco/nco_netcdf.h
+++ b/src/nco/nco_netcdf.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.h,v 1.112 2014/02/06 00:48:18 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.h,v 1.114 2014/04/14 04:54:12 zender Exp $ */
/* Purpose: NCO wrappers for netCDF C library */
@@ -39,6 +39,7 @@
#define NCO_NETCDF_H
/* Standard header files */
+#include <ctype.h> /* isalnum(), isdigit(), tolower() */
#include <stdio.h> /* stderr, FILE, NULL, printf */
#include <stdlib.h> /* strtod, strtol, malloc, getopt, exit */
#include <string.h> /* strcmp() */
@@ -216,6 +217,10 @@ nco_ndn_sng /* [fnc] Convert netCDF endianness enum to string for hidden attribu
(const int flg_ndn); /* I [enm] netCDF endianness */
/* End Utility Routines */
+char * /* O [sng] netCDF-compatible name */
+nm2sng_nc /* [fnc] Turn group/variable/dimension/attribute name into legal netCDF */
+(const char * const nm_sng); /* I [sng] Name to netCDF-ize */
+
#if 0
#ifdef HAVE_NETCDF4_H
/* netCDF4 routines defined by Unidata netCDF4 Library libnetcdf.a */
diff --git a/src/nco/nco_prn.c b/src/nco/nco_prn.c
index 0b256a1..3b1cb86 100644
--- a/src/nco/nco_prn.c
+++ b/src/nco/nco_prn.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_prn.c,v 1.219 2014/03/04 22:44:16 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_prn.c,v 1.220 2014/04/16 18:00:08 zender Exp $ */
/* Purpose: Print variables, attributes, metadata */
@@ -2104,8 +2104,8 @@ nco_grp_prn /* [fnc] Recursively print group contents */
/* Find dimension information for group */
for(dmn_idx=0;dmn_idx<trv_tbl->nbr_dmn;dmn_idx++){
- /* Will dimension be extracted? */
- if(trv_tbl->lst_dmn[dmn_idx].flg_xtr){
+ /* Will dimension be extracted? (or are we printing all dimensions?)*/
+ if(trv_tbl->lst_dmn[dmn_idx].flg_xtr || prn_flg->rad){
/* And was dimension defined in this group? */
if(!strcmp(grp_nm_fll,trv_tbl->lst_dmn[dmn_idx].grp_nm_fll)){
/* Add dimension to list of dimensions defined in group */
diff --git a/src/nco/nco_scm.c b/src/nco/nco_scm.c
index bca7d8e..a6e585f 100644
--- a/src/nco/nco_scm.c
+++ b/src/nco/nco_scm.c
@@ -30,7 +30,7 @@ cvs_vrs_prs(void) /* [fnc] Return CVS version string */
/* Unexpanded cvs keywords in cvs_Name trigger GCC 4.0+ warning
"./src/nco/nco_scm.c:81: warning: offset outside bounds of constant string"
because routine looks for cvs_Name+7 later on */
- char cvs_Name[]="$Name: nco-4_4_3 $";
+ char cvs_Name[]="$Name: nco-4_4_4 $";
const char dlr_nm_cln_spc[]="$Name: "; /* [sng] Dollar name colon space */
const char nco_sng[]="nco";
const char spc_dlr[]=" $"; /* [sng] Space dollar */
diff --git a/src/nco/nco_sng_utl.c b/src/nco/nco_sng_utl.c
index 8cb95d6..960496f 100644
--- a/src/nco/nco_sng_utl.c
+++ b/src/nco/nco_sng_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.c,v 1.72 2014/01/29 20:59:19 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.c,v 1.75 2014/04/13 07:56:41 zender Exp $ */
/* Purpose: String utilities */
@@ -155,6 +155,7 @@ nm2sng_cdl /* [fnc] Turn variable/dimension/attribute name into legal CDL */
Weird file menagerie shows that:
NASA HDF4 TRMM files (3B43*.HDF) have filenames starting with numerals (and no metadata)
NASA HDF4 AIRS files (AIRS*.hdf) have colons in dimension names
+ NASA HDF4 CERES files (CER*) have forward slashes and spaces in attribute, dimension, and variable names
NASA HDF4 AMSR_E files (AMSR_E*.hdf) have spaces in variable names, colons and spaces in dimension names
NASA HDF4 MODIS files (MOD*.hdf) have colons in names
NASA HDF4 MOPPITT files (MOP*.hdf) have spaces in variable names, colons and spaces in dimension names */
@@ -246,7 +247,7 @@ nm2sng_cdl /* [fnc] Turn variable/dimension/attribute name into legal CDL */
nm_cpy=(char *)nco_free(nm_cpy);
return nm_cdl;
-} /* end nm2sng_cdl */
+} /* end nm2sng_cdl() */
char * /* O [sng] String containing printable result */
chr2sng_cdl /* [fnc] Translate C language character to printable, visible ASCII bytes */
@@ -275,7 +276,7 @@ chr2sng_cdl /* [fnc] Translate C language character to printable, visible ASCII
} /* end switch */
return val_sng;
-} /* end chr2sng_cdl */
+} /* end chr2sng_cdl(0 */
char * /* O [sng] String containing printable result */
chr2sng_xml /* [fnc] Translate C language character to printable, visible ASCII bytes */
@@ -305,7 +306,7 @@ chr2sng_xml /* [fnc] Translate C language character to printable, visible ASCII
} /* end switch */
return val_sng;
-} /* end chr2sng_xml */
+} /* end chr2sng_xml(0 */
int /* O [nbr] Number of escape sequences translated */
sng_ascii_trn /* [fnc] Replace C language '\X' escape codes in string with ASCII bytes */
@@ -393,28 +394,45 @@ sng_ascii_trn /* [fnc] Replace C language '\X' escape codes in string with ASCII
} /* end sng_ascii_trn() */
void /* O [nbr] */
-sng_trm_trl_zro /* [fnc] Trim zeros trailing the decimal point from floating point string */
+sng_trm_trl_zro /* [fnc] Trim zeros trailing decimal point and preceding exponent from floating point string */
(char * const sng, /* I/O [sng] String to process */
const int trl_zro_max) /* [nbr] Maximum number of trailing zeros allowed */
{
- /* Purpose: Trim zeros trailing decimal point from floating point string
+ /* Purpose: Trim zeros trailing decimal point and preceding exponent from floating point string
Allow trl_zro_max trailing zeros to remain */
char *trl_zro_ptr; /* [sng] Trailing zero pointer */
char *dcm_ptr; /* [sng] Decimal point pointer */
+ char *xpn_ptr; /* [sng] Exponent pointer */
char *vld_ptr=NULL; /* [sng] Valid pointer */
char chr_val; /* [chr] Character value */
+ char xpn_chr; /* [chr] Exponent indicator */
int cnt_zro_rmn; /* [nbr] Number of trailing zeros remaining until maximum reached */
/* Find decimal point, if any */
dcm_ptr=strchr(sng,'.');
if(dcm_ptr){
- /* Find last zero after decimal point, if any */
+ /* Cleave string at exponent portion, if any, then restore exponent later */
+ xpn_ptr=strchr(sng,'d');
+ if(!xpn_ptr) xpn_ptr=strchr(sng,'D');
+ if(!xpn_ptr) xpn_ptr=strchr(sng,'e');
+ if(!xpn_ptr) xpn_ptr=strchr(sng,'E');
+ if(xpn_ptr){
+ xpn_chr=*xpn_ptr;
+ /* Amputate exponent so strrchr() finds zeros in decimal not in exponent */
+ *xpn_ptr='\0';
+ } /* !xpn_ptr */
+
+ /* Find last zero, if any, after decimal point and before exponent */
trl_zro_ptr=strrchr(dcm_ptr,'0');
+ /* Restore exponent indicator, if any */
+ if(xpn_ptr) *xpn_ptr=xpn_chr;
+
+ /* Zero exists to right of decimal and left of exponent */
if(trl_zro_ptr){
chr_val=*(trl_zro_ptr+1);
- /* If the next character is a (non-zero) digit, then this is not a trailing zero */
+ /* If next character is a (non-zero) digit, then this is not a trailing zero */
if(isdigit(chr_val)) return;
/* Next character is a NUL or exponent (d,D,e,E) or floating type suffix (d,D,f,F) */
/* This is a trailing zero. Allow given number of trailing zeros. */
diff --git a/src/nco/nco_sng_utl.h b/src/nco/nco_sng_utl.h
index f8c6499..0b77292 100644
--- a/src/nco/nco_sng_utl.h
+++ b/src/nco/nco_sng_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.h,v 1.44 2013/12/31 05:14:02 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.h,v 1.46 2014/04/14 04:54:12 zender Exp $ */
/* Purpose: String utilities */
@@ -28,7 +28,7 @@
#endif /* !_MSC_VER */
#if defined(NEED_STRCASECMP) || defined(NEED_STRCASESTR)
-# include <ctype.h> /* tolower() */
+# include <ctype.h> /* isalnum(), isdigit(), tolower() */
#endif /* !NEED_STRCASECMP || !NEED_STRCASESTR */
/* 3rd party vendors */
@@ -100,7 +100,7 @@ sng_idx_dlm_c2f /* [fnc] Replace brackets with parentheses in a string */
(char *sng); /* [sng] String to change from C to Fortran notation */
void /* O [nbr] */
-sng_trm_trl_zro /* [fnc] Trim zeros trailing the decimal point from floating point string */
+sng_trm_trl_zro /* [fnc] Trim zeros trailing decimal point and preceding exponent from floating point string */
(char * const sng, /* I/O [sng] String to process */
const int trl_zro_max); /* [nbr] Maximum number of trailing zeros allowed */
diff --git a/src/nco/nco_typ.h b/src/nco/nco_typ.h
index dac32b7..5dd1e3e 100644
--- a/src/nco/nco_typ.h
+++ b/src/nco/nco_typ.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_typ.h,v 1.37 2013/12/31 05:14:02 zender Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/nco_typ.h,v 1.38 2014/05/27 02:04:18 zender Exp $ */
/* Purpose: Type definitions, opaque types */
@@ -123,7 +123,8 @@ C code." */
# define NC_FILL_UINT64 ((unsigned long long int)18446744073709551614ULL)
#endif
#ifndef NC_FILL_STRING
-# define NC_FILL_STRING ""
+/* 20140526: Changed from "" to (char *)"" */
+# define NC_FILL_STRING (char *)""
#endif
/* end define compatibility tokens when user does not have netCDF4 netcdf.h */
diff --git a/src/nco/ncpdq.c b/src/nco/ncpdq.c
index 4699dbb..b5d68b3 100644
--- a/src/nco/ncpdq.c
+++ b/src/nco/ncpdq.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncpdq.c,v 1.392 2014/03/27 19:19:30 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncpdq.c,v 1.395 2014/05/21 20:39:29 zender Exp $ */
/* ncpdq -- netCDF pack, re-dimension, query */
@@ -93,6 +93,7 @@ main(int argc,char **argv)
nco_bool RM_RMT_FL_PST_PRC=True; /* Option R */
nco_bool WRT_TMP_FL=True; /* [flg] Write output to temporary file */
nco_bool flg_cln=True; /* [flg] Clean memory prior to exit */
+ nco_bool flg_dmn_prc_usr_spc=False; /* [flg] Processed dimensions specified on command line */
char **dmn_rdr_lst_in=NULL_CEWI; /* Option a */
char **dmn_rdr_lst_in_rvr=NULL_CEWI; /* Option a (same list, keep the '-' )*/
@@ -120,8 +121,8 @@ main(int argc,char **argv)
char scl_fct_sng[]="scale_factor"; /* [sng] Unidata standard string for scale factor */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncpdq.c,v 1.392 2014/03/27 19:19:30 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.392 $";
+ const char * const CVS_Id="$Id: ncpdq.c,v 1.395 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.395 $";
const char * const opt_sht_lst="3467Aa:CcD:d:Fg:G:hL:l:M:Oo:P:p:Rrt:v:UxZ-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -394,6 +395,7 @@ main(int argc,char **argv)
FORCE_APPEND=!FORCE_APPEND;
break;
case 'a': /* Re-order dimensions */
+ flg_dmn_prc_usr_spc=True;
dmn_rdr_lst_in=nco_lst_prs_2D(optarg,",",&dmn_rdr_nbr_in);
dmn_rdr_lst_in_rvr=nco_lst_prs_2D(optarg,",",&dmn_rdr_nbr_in);
dmn_rdr_nbr=dmn_rdr_nbr_in;
@@ -538,7 +540,7 @@ main(int argc,char **argv)
(void)nco_inq_format(in_id,&fl_in_fmt);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -621,7 +623,7 @@ main(int argc,char **argv)
if(IS_REORDER){
/* Create list of dimensions to average(ncwa)/re-order(ncpdq) */
- (void)nco_dmn_avg_mk(in_id,dmn_rdr_lst_in,dmn_rdr_nbr_in,False,trv_tbl,&dmn_rdr,&dmn_rdr_nbr);
+ (void)nco_dmn_avg_mk(in_id,dmn_rdr_lst_in,dmn_rdr_nbr_in,flg_dmn_prc_usr_spc,False,trv_tbl,&dmn_rdr,&dmn_rdr_nbr);
} /* If re-ordering */
@@ -690,7 +692,7 @@ main(int argc,char **argv)
} /* nco_pck_plc == nco_pck_plc_nil */
/* Define dimensions, extracted groups, variables, and attributes in output file. NOTE. record name is NULL */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,nco_pck_plc,(char *)NULL,trv_tbl);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc,(char *)NULL,trv_tbl);
/* Catenate time-stamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
diff --git a/src/nco/ncra.c b/src/nco/ncra.c
index e043b67..074c6d1 100644
--- a/src/nco/ncra.c
+++ b/src/nco/ncra.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncra.c,v 1.528 2014/03/29 20:11:29 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncra.c,v 1.538 2014/05/21 20:39:29 zender Exp $ */
/* This single source file compiles into three separate executables:
ncra -- netCDF record averager
@@ -137,8 +137,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncra.c,v 1.528 2014/03/29 20:11:29 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.528 $";
+ const char * const CVS_Id="$Id: ncra.c,v 1.538 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.538 $";
const char * const opt_sht_lst="3467ACcD:d:FG:g:HhL:l:n:Oo:p:P:rRt:v:X:xY:y:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -633,7 +633,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -709,7 +709,7 @@ main(int argc,char **argv)
if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Define dimensions, extracted groups, variables, and attributes in output file */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,nco_pck_plc_nil,(char *)NULL,trv_tbl);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,(char *)NULL,trv_tbl);
/* Define ensemble fixed variables (True parameter) */
if(nco_prg_id_get() == ncge) (void)nco_nsm_dfn_wrt(in_id,out_id,&cnk,dfl_lvl,gpe,True,trv_tbl);
@@ -1133,7 +1133,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl1);
/* Construct GTT using current file ID */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl1);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,var_lst_in_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl1);
/* Check if all input -d dimensions were found */
(void)nco_chk_dmn(lmt_nbr,flg_dne);
@@ -1203,6 +1203,9 @@ main(int argc,char **argv)
} /* End ncge section */
+ /* For ncge, save helpful metadata for later handling by ncbo */
+ if(nco_prg_id == ncge && fl_idx == 0) (void)nco_nsm_wrt_att(in_id,out_id,gpe,trv_tbl);
+
if(nco_dbg_lvl >= nco_dbg_scl) (void)fprintf(fp_stderr,"\n");
/* Close input netCDF file */
@@ -1294,45 +1297,10 @@ main(int argc,char **argv)
if(nco_pck_plc == nco_pck_plc_all_new_att) var_prc_out[idx]=nco_put_var_pck(grp_out_id,var_prc_out[idx],nco_pck_plc);
if(var_prc_out[idx]->nbr_dim == 0) (void)nco_put_var1(grp_out_id,var_prc_out[idx]->id,var_prc_out[idx]->srt,var_prc_out[idx]->val.vp,var_prc_out[idx]->type); else (void)nco_put_vara(grp_out_id,var_prc_out[idx]->id,var_prc_out[idx]->srt,var_prc_out[idx]->cnt,var_prc_out[idx]->val.vp,var_prc_out[idx]->type);
- /* For ncge, save helpful metadata for later handling by ncbo */
- if(nco_prg_id == ncge){
-
- aed_sct aed; /* [sct] Structure containing information necessary to edit */
-
- /* Initialize attribute-edit structure for this variable */
- aed.att_nm=strdup("ensemble");
- aed.type=NC_CHAR;
- aed.var_nm=var_prc_out[idx]->nm;
- aed.id=var_out_id;
- aed.sz=strlen("average");
- aed.val.cp=(char *)nco_malloc((aed.sz+1L)*sizeof(char));
- (void)strcpy(aed.val.cp,"average");
- aed.mode=aed_create;
-
- /* Create attribute to note ensenmble average */
- (void)nco_aed_prc(grp_out_id,var_out_id,aed);
-
- aed.var_nm=NULL;
- aed.id=NC_GLOBAL;
- (void)nco_aed_prc(grp_out_id,NC_GLOBAL,aed);
-
- /* Build variable name */
- char *var_nm_fll=nco_bld_nm_fll(grp_out_fll,var_prc_out[idx]->nm);;
- if(nco_dbg_lvl_get() >= nco_dbg_fl){
- (void)fprintf(stdout,"%s: <variable %d> <%s>\n",nco_prg_nm_get(),idx,var_nm_fll);
- }
- /* Free built variable name */
- var_nm_fll=(char *)nco_free(var_nm_fll);
- if(aed.att_nm) aed.att_nm=(char *)nco_free(aed.att_nm);
- if(aed.val.cp) aed.val.cp=(char *)nco_free(aed.val.cp);
-
- } /* ncge */
-
- /* Memory management after current extracted group */
- if(grp_out_fll) grp_out_fll=(char *)nco_free(grp_out_fll);
} /* end loop over idx */
} /* end if ncfe and ncge */
+
/* Free averaging and tally buffers */
if(nco_prg_id == ncra || nco_prg_id == ncfe || nco_prg_id == ncge){
#ifdef _OPENMP
diff --git a/src/nco/ncrename.c b/src/nco/ncrename.c
index be7cb01..d3588f9 100644
--- a/src/nco/ncrename.c
+++ b/src/nco/ncrename.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncrename.c,v 1.192 2014/03/27 19:19:30 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncrename.c,v 1.193 2014/05/21 20:39:29 zender Exp $ */
/* ncrename -- netCDF renaming operator */
@@ -100,8 +100,8 @@ main(int argc,char **argv)
char var_nm[NC_MAX_NAME+1];
- const char * const CVS_Id="$Id: ncrename.c,v 1.192 2014/03/27 19:19:30 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.192 $";
+ const char * const CVS_Id="$Id: ncrename.c,v 1.193 2014/05/21 20:39:29 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.193 $";
const char * const opt_sht_lst="a:D:d:g:hl:Oo:p:rv:-:";
const char dlm_chr='@'; /* Character delimiting variable from attribute name */
const char opt_chr='.'; /* Character indicating presence of following variable/dimension/attribute in file is optional */
@@ -336,7 +336,7 @@ main(int argc,char **argv)
trv_tbl_init(&trv_tbl);
/* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list*/
- (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,NULL,(int) 0,False,False,False,True,nco_pck_plc_nil,NULL,trv_tbl);
+ (void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,NULL,(int) 0,False,False,False,False,True,nco_pck_plc_nil,NULL,trv_tbl);
/* Loop input variable names */
for(int idx_var=0;idx_var<nbr_var_rnm;idx_var++){
diff --git a/src/nco/ncwa.c b/src/nco/ncwa.c
index 13c48c4..2aeadee 100644
--- a/src/nco/ncwa.c
+++ b/src/nco/ncwa.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncwa.c,v 1.410 2014/03/27 19:19:30 pvicente Exp $ */
+/* $Header: /cvsroot/nco/nco/src/nco/ncwa.c,v 1.420 2014/05/27 03:26:18 zender Exp $ */
/* ncwa -- netCDF weighted averager */
@@ -106,6 +106,7 @@ main(int argc,char **argv)
nco_bool WRT_TMP_FL=True; /* [flg] Write output to temporary file */
nco_bool flg_cll_mth=True; /* [flg] Add/modify cell_methods attributes */
nco_bool flg_cln=True; /* [flg] Clean memory prior to exit */
+ nco_bool flg_dmn_prc_usr_spc=False; /* [flg] Processed dimensions specified on command line */
nco_bool flg_ddra=False; /* [flg] DDRA diagnostics */
nco_bool flg_rdd=False; /* [flg] Retain degenerate dimensions */
@@ -134,8 +135,8 @@ main(int argc,char **argv)
char *wgt_nm=NULL;
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncwa.c,v 1.410 2014/03/27 19:19:30 pvicente Exp $";
- const char * const CVS_Revision="$Revision: 1.410 $";
+ const char * const CVS_Id="$Id: ncwa.c,v 1.420 2014/05/27 03:26:18 zender Exp $";
+ const char * const CVS_Revision="$Revision: 1.420 $";
const char * const opt_sht_lst="3467Aa:B:bCcD:d:Fg:G:hIL:l:M:m:nNOo:p:rRT:t:v:Ww:xy:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -428,6 +429,7 @@ main(int argc,char **argv)
FORCE_APPEND=!FORCE_APPEND;
break;
case 'a': /* Dimensions over which to average hyperslab */
+ flg_dmn_prc_usr_spc=True;
if(dmn_avg_lst_in){
(void)fprintf(fp_stdout,"%s: ERROR Option -a appears more than once\n",nco_prg_nm);
(void)fprintf(fp_stdout,"%s: HINT Use -a dim1,dim2,... not -a dim1 -a dim2 ...\n",nco_prg_nm);
@@ -439,7 +441,7 @@ main(int argc,char **argv)
case 'B': /* Mask string to be parsed */
msk_cnd_sng=(char *)strdup(optarg);
#ifdef _MSC_VER
- (void)fprintf(fp_stdout,"%s: ERROR -B and --mask_condition options unsupported on Windows, which lacks a free, standard parser and lexer. HINT: Break condition into component -m -T -M switches, e.g., use -m ORO -T lt -M 1.0 instead of -B \"ORO < 1\"\n",nco_prg_nm);
+ (void)fprintf(fp_stdout,"%s: ERROR -B and --mask_condition options unsupported on Windows, which lacks a standard parser and lexer that are free. HINT: Break condition into component -m -T -M switches, e.g., use -m ORO -T lt -M 1.0 instead of -B \"ORO < 1\"\n",nco_prg_nm);
nco_exit(EXIT_FAILURE);
#endif /* !_MSC_VER */
break;
@@ -599,7 +601,7 @@ main(int argc,char **argv)
/* Initialize line counter */
ncap_ln_nbr_crr=(size_t *)nco_realloc(ncap_ln_nbr_crr,ncap_ncl_dpt_crr+1UL);
ncap_ln_nbr_crr[ncap_ncl_dpt_crr]=1UL; /* [cnt] Line number incremented in ncap.l */
- if(ncap_ncwa_scn(&prs_arg,msk_cnd_sng,&msk_nm,&msk_val,&op_typ_rlt) == 0) nco_exit(EXIT_FAILURE);
+ if(ncap_ncwa_scn(&prs_arg,msk_cnd_sng,&msk_nm,&msk_val,&op_typ_rlt) != NCO_NOERR) nco_exit(EXIT_FAILURE);
} /* endif msk_cnd_sng */
#endif /* _MSC_VER */
@@ -624,7 +626,7 @@ main(int argc,char **argv)
(void)nco_inq_format(in_id,&fl_in_fmt);
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
- (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
+ (void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Get number of variables, dimensions, and global attributes in file, file format */
(void)trv_tbl_inq((int *)NULL,(int *)NULL,(int *)NULL,&nbr_dmn_fl,(int *)NULL,(int *)NULL,(int *)NULL,(int *)NULL,&nbr_var_fl,trv_tbl);
@@ -650,7 +652,7 @@ main(int argc,char **argv)
dmn_out=(dmn_sct **)nco_malloc(nbr_dmn_fl*sizeof(dmn_sct *));
/* Create list of dimensions to average */
- (void)nco_dmn_avg_mk(in_id,dmn_avg_lst_in,dmn_avg_nbr,flg_rdd,trv_tbl,&dmn_avg,&dmn_avg_nbr);
+ (void)nco_dmn_avg_mk(in_id,dmn_avg_lst_in,dmn_avg_nbr,flg_dmn_prc_usr_spc,flg_rdd,trv_tbl,&dmn_avg,&dmn_avg_nbr);
/* Create list of dimensions to keep on output */
(void)nco_dmn_out_mk(dim,nbr_dmn_xtr,trv_tbl,&dmn_out,&nbr_dmn_out);
@@ -701,7 +703,7 @@ main(int argc,char **argv)
if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Define dimensions, extracted groups, variables, and attributes in output file. */
- (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,nco_pck_plc_nil,(char *)NULL,trv_tbl);
+ (void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,(char *)NULL,trv_tbl);
/* Catenate time-stamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
@@ -711,9 +713,9 @@ main(int argc,char **argv)
if(msk_nm){
for(idx=0;idx<nbr_var_prc;idx++){
char *grp_out_fll=NULL; /* [sng] Group name */
- int grp_out_id; /* [ID] Group ID (output) */
- int var_out_id; /* [ID] Variable ID (output) */
- trv_sct *var_trv; /* [sct] Variable GTT object */
+ int grp_out_id; /* [ID] Group ID (output) */
+ int var_out_id; /* [ID] Variable ID (output) */
+ trv_sct *var_trv; /* [sct] Variable GTT object */
/* Obtain variable GTT object using full variable name */
var_trv=trv_tbl_var_nm_fll(var_prc[idx]->nm_fll,trv_tbl);
@@ -737,7 +739,7 @@ main(int argc,char **argv)
if(!var_prc_out[idx]->has_mss_val){
var_prc_out[idx]->has_mss_val=True;
var_prc_out[idx]->mss_val=nco_mss_val_mk(var_prc[idx]->type);
- (void)nco_put_att(grp_out_id,var_prc_out[idx]->id,nco_mss_val_sng_get(),var_prc_out[idx]->type,1,var_prc_out[idx]->mss_val.vp);
+ (void)nco_put_att(grp_out_id,var_prc_out[idx]->id,nco_mss_val_sng_get(),var_prc_out[idx]->type,(long)1,var_prc_out[idx]->mss_val.vp);
} /* end if */
} /* end for */
} /* end if */
@@ -853,7 +855,7 @@ main(int argc,char **argv)
/* Check mask found for this variable, using msk */
if(msk && (!var_prc[idx]->is_crd_var || WGT_MSK_CRD_VAR)){
msk_out=nco_var_cnf_dmn(var_prc[idx],msk,msk_out,MUST_CONFORM,&DO_CONFORM_MSK);
- /* If msk and var did not conform then do not mask var! */
+ /* Mask variable iff msk and var conform */
if(DO_CONFORM_MSK){
msk_out=nco_var_cnf_typ(var_prc[idx]->type,msk_out);
diff --git a/src/nco_c++/Makefile.old b/src/nco_c++/Makefile.old
index 192be63..95d5fad 100644
--- a/src/nco_c++/Makefile.old
+++ b/src/nco_c++/Makefile.old
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco_c++/Makefile.old,v 1.105 2013/12/31 05:14:02 zender Exp $ -*-makefile-*-
+# $Header: /cvsroot/nco/nco/src/nco_c++/Makefile.old,v 1.106 2014/05/04 05:39:01 zender Exp $ -*-makefile-*-
# Purpose: Makefile for libnco_c++ module nco_c++
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -375,7 +375,12 @@ endif # end if
ifeq (${UDUNITS2},Y)
# 20130607: -lexpat needed on .deb systems, not on RPM systems
UDUNITS_RPM_DRC := /usr/include/udunits2
-UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ifneq (${UDUNITS_INC},/usr/local/include)
+# UDUNITS_RPM_TST := $(shell ls ${UDUNITS_RPM_DRC}/udunits2.h)
+ UDUNITS_RPM_TST := ${UDUNITS_RPM_DRC}/udunits2.h
+else
+ UDUNITS_RPM_TST := /usr/include/udunits2.h
+endif # end if
ifeq (${UDUNITS_RPM_TST},${UDUNITS_RPM_DRC}/udunits2.h)
NETCDF_INC += -I${UDUNITS_RPM_DRC}
endif # end if
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/nco.git
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