[nco] 01/05: Imported Upstream version 4.4.9
Sebastiaan Couwenberg
sebastic at moszumanska.debian.org
Mon May 25 14:28:45 UTC 2015
This is an automated email from the git hooks/post-receive script.
sebastic pushed a commit to branch master
in repository nco.
commit 5891f1f6d51a0f1b553a5bc119ad95c89411fac8
Author: Bas Couwenberg <sebastic at xs4all.nl>
Date: Mon May 25 15:12:22 2015 +0200
Imported Upstream version 4.4.9
---
.gitignore | 47 +
Makefile.am | 2 +-
Makefile.in | 4 +-
README.md | 88 +
bld/Makefile | 91 +-
bld/ddd_mpd.py | 2 +-
bld/libnco_tst.c | 4 +-
bld/nco.spec | 16 +-
bld/nco_dst.pl | 36 +-
bld/pvmgetarch | 2 +-
bm/NCO_benchmarks.pm | 2 +-
bm/NCO_bm.pm | 2 +-
bm/NCO_rgr.pm | 343 +-
bm/cch_clr.pl | 2 +-
bm/gcm_T85.cdl | 2 +-
bm/mk_bm_plots.pl | 2 +-
bm/nco_bm.pl | 2 +-
bm/nco_bm.sh | 2 +-
bm/nco_bm_hyp.sh | 2 +-
bm/nco_bm_md5wc_tbl.pl | 2 +-
bm/stl_5km.cdl | 2 +-
config.h.in | 21 +
configure | 442 +-
configure.ac | 85 +-
configure.eg | 56 +-
data/.gitignore | 4 +
data/Makefile.am | 2 +-
data/Makefile.in | 4 +-
data/bin_cnt.nco | 2 +-
data/cf2.cdl | 25 +
data/ddra.nco | 2 +-
data/gsl_sf.in | 2 +-
data/hdf.cdl | 2 +-
data/in.cdl | 15 +-
data/in_4.cdl | 2 +-
data/in_grp.cdl | 31 +-
data/in_nomismatch.cdl | 2 +-
data/in_rec_zero.cdl | 2 +-
data/ncap.in | 2 +-
data/ncap.in2 | 2 +-
data/ncap2.in | 2 +-
data/ncap2_tst.nco | 2 +-
data/ncl.ncl | 2 +-
data/nco_bnch.sh | 2 +-
data/netcdf4.nco | 2 +-
data/psd.nco | 2 +-
data/psd_wrf.nco | 2 +-
data/rgr.nco | 2 +-
data/swamp.sh | 2 +-
data/tst.nco | 2 +-
data/udunits.dat | 2 +-
data/xmp_500mb_hgt.nco | 2 +-
data/xmp_wnd_msk.nco | 2 +-
debian/changelog | 791 +
debian/compat | 1 +
debian/control | 19 +
debian/convert | 68 +
debian/copyright | 76 +
debian/doc-base | 16 +
debian/files | 1 +
debian/info | 1 +
debian/rules | 146 +
debian/source/format | 1 +
debian/watch | 2 +
doc/.gitignore | 22 +
doc/ANNOUNCE | 201 +-
doc/ChangeLog | 772 +-
doc/MANIFEST | 9 +-
doc/Makefile.in | 2 +
doc/README | 2 +-
doc/TAG | 2 +-
doc/TODO | 15 +-
doc/VERSION | 2 +-
doc/build_hints.shtml | 2 +-
doc/debian.txt | 172 +-
doc/dods.sh | 2 +-
doc/highlights_old.shtml | 2 +-
doc/i18n.txt | 2 +-
doc/index.shtml | 165 +-
doc/insure.txt | 2 +-
doc/man_end.txt | 2 +-
doc/man_srt.txt | 2 +-
doc/milestones_old.shtml | 2 +-
doc/mpi.txt | 2 +-
doc/nco.dvi | Bin 1397484 -> 0 bytes
doc/nco.html | 21622 -------------
doc/nco.pdf | Bin 1274656 -> 0 bytes
doc/nco.ps | 63585 -------------------------------------
doc/nco.texi | 482 +-
doc/nco.txt | 16295 ----------
doc/nco.xml | 19335 -----------
doc/nco_authors.txt | 17 +
doc/nco_ltr_spp.txt | 2 +-
doc/nco_news.shtml | 2 +-
doc/nco_src_frg.txt | 2 +-
doc/netcdf.h.3.6.3 | 2 +-
doc/opendap.sh | 2 +-
doc/problems_old.shtml | 2 +-
doc/valgrind.txt | 2 +-
doc/xmp_cesm.html | 2 +-
man/.gitignore | 4 +
man/Makefile.am | 2 +-
man/Makefile.in | 4 +-
man/ncap.1 | 6 +-
man/ncap2.1 | 6 +-
man/ncatted.1 | 4 +-
man/ncbo.1 | 6 +-
man/ncdiff.1 | 2 +-
man/ncea.1 | 6 +-
man/ncecat.1 | 4 +-
man/nces.1 | 6 +-
man/ncflint.1 | 17 +-
man/ncks.1 | 6 +-
man/nco.1 | 6 +-
man/ncpdq.1 | 6 +-
man/ncra.1 | 6 +-
man/ncrcat.1 | 6 +-
man/ncrename.1 | 4 +-
man/ncwa.1 | 6 +-
qt/libnco/libnco.pro | 4 +
qt/libnco/libnco.vcxproj | 4 +
src/.gitignore | 5 +
src/Makefile.am | 2 +-
src/Makefile.in | 4 +-
src/nco++/.gitignore | 6 +
src/nco++/Makefile.am | 2 +-
src/nco++/Makefile.in | 4 +-
src/nco++/Makefile.old | 13 +-
src/nco++/fmc_all_cls.cc | 23 +-
src/nco++/fmc_gsl_cls.cc | 2 +-
src/nco++/libnco++.hh | 2 +-
src/nco++/ncap2.cc | 8 +-
src/nco++/ncap2_utl.cc | 2 +-
src/nco++/ncap2_utl.hh | 2 +-
src/nco++/ncoGrammer.g | 11 +-
src/nco++/ncoLexer.cpp | 11 +-
src/nco++/ncoLexer.hpp | 2 +-
src/nco++/ncoParser.hpp | 2 +-
src/nco++/ncoTree.cpp | 224 +-
src/nco++/ncoTree.hpp | 4 +-
src/nco++/nco_gsl.c | 2 +-
src/nco++/nco_gsl.h | 2 +-
src/nco++/prs_cls.cc | 2 +-
src/nco++/sdo_utl.cc | 2 +-
src/nco++/sdo_utl.hh | 2 +-
src/nco/.gitignore | 17 +
src/nco/ESMC_CoordSys.h | 37 +
src/nco/Makefile.am | 6 +-
src/nco/Makefile.in | 40 +-
src/nco/libnco.h | 6 +-
src/nco/mpncbo.c | 6 +-
src/nco/mpncecat.c | 6 +-
src/nco/mpncflint.c | 6 +-
src/nco/mpncpdq.c | 6 +-
src/nco/mpncra.c | 6 +-
src/nco/mpncwa.c | 6 +-
src/nco/ncap.c | 9 +-
src/nco/ncap.h | 2 +-
src/nco/ncap_lex.l | 2 +-
src/nco/ncap_utl.c | 4 +-
src/nco/ncap_yacc.y | 2 +-
src/nco/ncatted.c | 6 +-
src/nco/ncbo.c | 10 +-
src/nco/ncecat.c | 26 +-
src/nco/ncflint.c | 12 +-
src/nco/ncks.c | 96 +-
src/nco/nco.h | 57 +-
src/nco/nco_att_utl.c | 7 +-
src/nco/nco_att_utl.h | 2 +-
src/nco/nco_aux.c | 2 +-
src/nco/nco_aux.h | 2 +-
src/nco/nco_bnr.c | 2 +-
src/nco/nco_bnr.h | 2 +-
src/nco/nco_cln_utl.c | 2 +-
src/nco/nco_cln_utl.h | 2 +-
src/nco/nco_cnf_dmn.c | 2 +-
src/nco/nco_cnf_dmn.h | 2 +-
src/nco/nco_cnf_typ.c | 2 +-
src/nco/nco_cnf_typ.h | 2 +-
src/nco/nco_cnk.c | 63 +-
src/nco/nco_cnk.h | 5 +-
src/nco/nco_cnv_arm.c | 4 +-
src/nco/nco_cnv_arm.h | 2 +-
src/nco/nco_cnv_csm.c | 85 +-
src/nco/nco_cnv_csm.h | 2 +-
src/nco/nco_ctl.c | 28 +-
src/nco/nco_ctl.h | 2 +-
src/nco/nco_dbg.c | 2 +-
src/nco/nco_dbg.h | 2 +-
src/nco/nco_dmn_utl.c | 2 +-
src/nco/nco_dmn_utl.h | 2 +-
src/nco/nco_fl_utl.c | 9 +-
src/nco/nco_fl_utl.h | 2 +-
src/nco/nco_getopt.c | 2 +-
src/nco/nco_getopt.h | 2 +-
src/nco/nco_grp_trv.c | 2 +-
src/nco/nco_grp_trv.h | 2 +-
src/nco/nco_grp_utl.c | 295 +-
src/nco/nco_grp_utl.h | 5 +-
src/nco/nco_lmt.c | 13 +-
src/nco/nco_lmt.h | 2 +-
src/nco/nco_lst_utl.c | 4 +-
src/nco/nco_lst_utl.h | 2 +-
src/nco/nco_md5.c | 4 +-
src/nco/nco_md5.h | 4 +-
src/nco/nco_mmr.c | 2 +-
src/nco/nco_mmr.h | 2 +-
src/nco/nco_mpi.h | 2 +-
src/nco/nco_msa.c | 2 +-
src/nco/nco_msa.h | 2 +-
src/nco/nco_mss_val.c | 2 +-
src/nco/nco_mss_val.h | 2 +-
src/nco/nco_netcdf.c | 49 +-
src/nco/nco_netcdf.h | 8 +-
src/nco/nco_omp.c | 2 +-
src/nco/nco_omp.h | 2 +-
src/nco/nco_pck.c | 6 +-
src/nco/nco_pck.h | 2 +-
src/nco/{nco_sld.c => nco_ppc.c} | 279 +-
src/nco/nco_ppc.h | 65 +
src/nco/nco_prn.c | 35 +-
src/nco/nco_prn.h | 2 +-
src/nco/nco_rec_var.c | 2 +-
src/nco/nco_rec_var.h | 2 +-
src/nco/nco_rgr.c | 1256 +
src/nco/nco_rgr.h | 185 +
src/nco/nco_rth_flt.c | 2 +-
src/nco/nco_rth_flt.h | 2 +-
src/nco/nco_rth_utl.c | 4 +-
src/nco/nco_rth_utl.h | 2 +-
src/nco/nco_scl_utl.c | 2 +-
src/nco/nco_scl_utl.h | 2 +-
src/nco/nco_scm.c | 6 +-
src/nco/nco_scm.h | 2 +-
src/nco/nco_sld.c | 498 +-
src/nco/nco_sld.h | 50 +-
src/nco/nco_sng_utl.c | 81 +-
src/nco/nco_sng_utl.h | 155 +-
src/nco/nco_srm.c | 2 +-
src/nco/nco_srm.h | 2 +-
src/nco/nco_typ.h | 2 +-
src/nco/nco_var_avg.c | 2 +-
src/nco/nco_var_avg.h | 2 +-
src/nco/nco_var_lst.c | 10 +-
src/nco/nco_var_lst.h | 2 +-
src/nco/nco_var_rth.c | 2 +-
src/nco/nco_var_rth.h | 2 +-
src/nco/nco_var_scv.c | 2 +-
src/nco/nco_var_scv.h | 2 +-
src/nco/nco_var_utl.c | 171 +-
src/nco/nco_var_utl.h | 7 +-
src/nco/ncpdq.c | 12 +-
src/nco/ncra.c | 158 +-
src/nco/ncrename.c | 8 +-
src/nco/ncwa.c | 27 +-
src/nco_c++/.gitignore | 7 +
src/nco_c++/INSTALL | 2 +-
src/nco_c++/Makefile.am | 2 +-
src/nco_c++/Makefile.in | 4 +-
src/nco_c++/Makefile.old | 13 +-
src/nco_c++/README | 2 +-
src/nco_c++/TODO | 2 +-
src/nco_c++/libnco_c++.hh | 2 +-
src/nco_c++/nco_att.cc | 2 +-
src/nco_c++/nco_att.hh | 2 +-
src/nco_c++/nco_dmn.cc | 2 +-
src/nco_c++/nco_dmn.hh | 2 +-
src/nco_c++/nco_fl.cc | 2 +-
src/nco_c++/nco_fl.hh | 2 +-
src/nco_c++/nco_hgh.cc | 4 +-
src/nco_c++/nco_hgh.hh | 2 +-
src/nco_c++/nco_utl.cc | 4 +-
src/nco_c++/nco_utl.hh | 2 +-
src/nco_c++/nco_var.cc | 2 +-
src/nco_c++/nco_var.hh | 2 +-
src/nco_c++/tst.cc | 12 +-
276 files changed, 6397 insertions(+), 123443 deletions(-)
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..97f3a08
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,47 @@
+# Git-ignore patterns for ~/nco
+
+# Autoconf/Automake
+
+Makefile.in
+.deps
+.libs
+*.o
+*.la
+*.lo
+
+/autom4te.cache
+/aclocal.m4
+/compile
+/configure
+/depcomp
+/install-sh
+/missing
+/Makefile
+
+# Odd files
+gmon.out
+
+# Editors
+
+*.~?~
+*~
+TAGS
+
+# NCO-generic
+*.nc
+*.hdf
+
+# Directory-specific
+/config.h
+/config.guess
+/config.log
+/config.sub
+/config.status
+/libtool
+/stamp-h*
+
+nco.config.log.*.foo
+nco.configure.*.foo
+nco.libtool.*.foo
+nco.make.*.foo
+
diff --git a/Makefile.am b/Makefile.am
index d7311f6..3210fb0 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/Makefile.am,v 1.17 2012/07/05 23:18:50 pvicente Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
#SUBDIRS = data src man doc
SUBDIRS = data src man @DOC_FOLDER@
diff --git a/Makefile.in b/Makefile.in
index 4bbb449..e6bcb8f 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/Makefile.in,v 1.147 2015/01/07 18:07:23 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
@@ -233,6 +233,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..efcd50f
--- /dev/null
+++ b/README.md
@@ -0,0 +1,88 @@
+NCO NetCDF Operators
+====================
+
+<img src="doc/logo_nco_stk.png" height=442 width=722 align=top>
+
+The NCO toolkit manipulates and analyzes data stored in
+[netCDF](http://www.unidata.ucar.edu/packages/netcdf)-accessible
+formats, including
+[DAP](http://opendap.org),
+[HDF4](http://hdfgroup.org/products/hdf4), and
+[HDF5](http://hdfgroup.org/HDF5).
+It exploits the geophysical expressivity of many
+[CF](http://cfconventions.org/1.6.html)
+(Climate & Forecast) metadata conventions,
+the flexible description of physical dimensions translated by
+[UDUnits](http://www.unidata.ucar.edu/packages/udunits),
+the network transparency of
+[OPeNDAP](http://opendap.org),
+the storage features (e.g., compression, chunking, groups) of
+[HDF](http://hdfgroup.org) (the Hierarchical Data Format),
+and many powerful mathematical and statistical algorithms of
+[GSL](http://www.gnu.org/software/gsl) (the GNU Scientific Library).
+NCO is
+[fast](http://dust.ess.uci.edu/ppr/ppr_ZeM07.pdf),
+[powerful](http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf),
+and
+[free](http://www.gnu.org/licenses/gpl-3.0.html).
+
+What is NCO?
+------------
+
+The netCDF Operators (NCO) comprise a dozen standalone,
+command-line programs that take
+[netCDF](http://www.unidata.ucar.edu/packages/netcdf),
+[HDF](http://hdfgroup.org), and/or
+[DAP](http://opendap.org)
+files as input, then operate (e.g., derive new data, compute
+statistics, print, hyperslab, manipulate metadata) and output the
+results to screen or files in text, binary, or netCDF formats.
+NCO aids analysis of gridded scientific data. The shell-command style
+of NCO allows users to manipulate and analyze files interactively, or
+with expressive scripts that avoid some overhead of higher-level
+programming environments.
+
+Traditional geoscience data analysis requires users to work with
+numerous flat (data in one level or namespace) files.
+In that paradigm instruments or models produce, and then repositories
+archive and distribute, and then researchers request and analyze,
+collections of flat files.
+NCO works well with that paradigm, yet it also embodies the necessary
+algorithms to transition geoscience data analysis from relying solely
+on traditional (or “flat”) datasets to allowing newer
+hierarchical (or “nested”) datasets.
+
+The next logical step is to support and enable combining all
+datastreams that meet user-specified criteria into a
+single or small number of files that hold *all* the
+science-relevant data organized in hierarchical structures.
+NCO (and no other software to our knowledge) can do this now.
+We call the resulting data storage, distribution, and analysis
+paradigm Group-Oriented Data Analysis and Distribution
+([GODAD](http://nco.sf.net/nco.html#godad)).
+GODAD lets the scientific question organize the data, not the
+*ad hoc* granularity of all relevant datasets.
+The [User Guide](http://nco.sf.net/nco.html) illustrates
+[GODAD](http://nco.sf.net/nco.html#godad)
+techniques for climate data analysis:
+
+| Operator | Full Name | Examples
+| -------- |:-------------------------- | :----------
+| `ncap2` | netCDF Arithmetic Processor | [here](http://nco.sf.net/nco.html#ncap2) |
+| `ncatted` | netCDF ATTribute EDitor | [here](http://nco.sf.net/nco.html#ncatted) |
+| `ncbo` | netCDF Binary Operator | [here](http://nco.sf.net/nco.html#ncbo) |
+| `nces` | netCDF Ensemble Statistics | [here](http://nco.sf.net/nco.html#nces) |
+| `ncecat` | netCDF Ensemble conCATenator | [here](http://nco.sf.net/nco.html#ncecat) |
+| `ncflint` | netCDF FiLe INTerpolator | [here](http://nco.sf.net/nco.html#ncflint) |
+| `ncks` | netCDF Kitchen Sink | [here](http://nco.sf.net/nco.html#ncks) |
+| `ncpdq` | netCDF Permute Dimensions Quickly, Pack Data Quietly | [here](http://nco.sf.net/nco.html#ncpdq) |
+| `ncra` | netCDF Record Averager | [here](http://nco.sf.net/nco.html#ncra) |
+| `ncrcat` | netCDF Record conCATenator | [here](http://nco.sf.net/nco.html#ncrcat) |
+| `ncrename` | netCDF RENAMEer | [here](http://nco.sf.net/nco.html#ncrename) |
+| `ncwa` | netCDF Weighted Averager | [here](http://nco.sf.net/nco.html#ncwa) |
+
+### How to Contribute: Volunteer, Endorse, or Donate
+
+The NCO project [homepage](http://sf.net/projects/nco)
+points to mailing lists, discussion forums, and instructions to make
+contributing easy. It contains everything about NCO that you may be looking for.
diff --git a/bld/Makefile b/bld/Makefile
index 37d1539..7423247 100644
--- a/bld/Makefile
+++ b/bld/Makefile
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/bld/Makefile,v 1.756 2015/02/05 19:26:55 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
# Purpose: GNU Makefile for NCO module nco
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -45,6 +45,7 @@
# cd ~/nco/bld;make dir all; cd - # Create target directories then build
# cd ~/nco/bld;make dbg;cd - # Print make diagnostics
# cd ~/nco/bld;make DPKG=Y;cd - # Debian hardening
+# cd ~/nco/bld;make ESMF=Y;cd - # ESMF regridding
# cd ~/nco/bld;make GSL=Y;cd - # GSL support
# cd ~/nco/bld;make I18N=Y;cd - # Internationalization
# cd ~/nco/bld;make lib_cln;cd - # Clean libraries
@@ -92,8 +93,12 @@
# netCDF4 on ORNL Linux cluster systems (titan, rhea.ccs.ornl.gov):
# module avail
# . ~/.bashrc
-# module add intel netcdf udunits gsl
-# cd ~/nco/bld;make NETCDF_ROOT='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3' UDUNITS_INC='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/include' UDUNITS_LIB='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/lib' OPTS=D allinone;cd -
+# module add intel gsl
+# export LD_LIBRARY_PATH='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3/lib:/sw/redhat6/szip/2.1/rhel6.6_gnu4.8.2/lib':${LD_LIBRARY_PATH}
+# export NETCDF_ROOT='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3'
+# export PATH='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3/bin':${PATH}
+# cd ~/nco/bld;make ANTLR_ROOT=${HOME} NETCDF_ROOT='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3' SZ=Y SZ_LIB='/sw/redhat6/szip/2.1/rhel6.6_gnu4.8.2/lib' UDUNITS_INC='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/include' UDUNITS_LIB='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/lib' OPTS=D allinone;cd -
+# ncap2:
# netCDF4 on NCAR Linux cluster systems (yellowstone):
# /ncar/opt/hpss/hsi # Starts HPSS session
# export PATH=${PATH}\:/ncar/opt/hpss
@@ -110,7 +115,7 @@
# cd ~/nco/bld;make NETCDF_ROOT='/glade/apps/opt/netcdf/4.3.0/intel/default' UDUNITS_INC='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/include' UDUNITS_LIB='/glade/apps/opt/udunits/2.1.24/intel/12.1.4/lib' OPTS=D allinone;cd -
# Cygwin on Windows Vista systems:
# cd ~/nco/bld;ANTLR='antlr' make --jobs=1 GSL=Y OPTS=D NETCDF4=Y UDUNITS=Y allinone;cd -
-# cd ~/bin/WIN32;tar cvzf ~/nco-4.4.8.win32.cygwin.tar.gz nc* ; scp ~/nco-4.4.8.win32.cygwin.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+# cd ~/bin/WIN32;tar cvzf ~/nco-4.5.0.win32.cygwin.tar.gz nc* ; scp ~/nco-4.5.0.win32.cygwin.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# Data files to dust
# cd ~/nco/data;scp cmip5.nc obs.nc mdl_1.nc mdl_2.nc in_grp*.nc in.nc in_4c.nc dust.ess.uci.edu:/var/www/html/nco
@@ -312,8 +317,15 @@ ifeq (${PNETCDF},Y)
MPI := Y
endif # !PNETCDF
+LINUX_OR_MACOSX := N
ifneq (${null},$(findstring LINUX,${PVM_ARCH}))
-# Decide among the plethora of Linux compilers
+ LINUX_OR_MACOSX := Y
+endif
+ifneq (${null},$(findstring MACOSX,${PVM_ARCH}))
+ LINUX_OR_MACOSX := Y
+endif
+# Decide among the plethora of compilers. Use names like LINUX_CC for historical reasons.
+ifeq (${LINUX_OR_MACOSX},Y)
ifndef LINUX_CXX
# C++ compiler for Linux
LINUX_CXX := g++
@@ -344,7 +356,7 @@ ifndef LINUX_FC
#LINUX_FC := pathf95
#LINUX_FC := pgf90
endif # endif LINUX_CC
-endif # endif LINUX
+endif # endif LINUX_OR_MACOSX
# OpenMP
ifeq (${OMP},Y)
@@ -369,6 +381,47 @@ else
BNR_SFX := ${null}
endif
+ifeq (${ESMF},Y)
+# Build ESMF-enabled NCO
+# Place ESMF block after DAP blocks for both to work together
+ifdef ESMF_INC
+ ESMF_INC_FLG := -I${ESMF_INC}
+else
+ifdef ESMF_ROOT
+ifeq (${PVM_ARCH},MACOSX)
+ ESMF_INC_FLG := -I${ESMF_ROOT}/include/esmf
+else
+ ESMF_INC_FLG := -I${ESMF_ROOT}/include
+endif # endif MACOSX
+else
+ ESMF_INC_FLG := -I/usr/local/include
+endif # endif ESMF_ROOT
+endif # endif ESMF_INC
+# 20150319: For some reaseon, ESMC.h #includes ESMC_VM.h which #includes mpi.h
+ifeq (${PVM_ARCH},MACOSX)
+# Use stub header for uniprocessor MPI emulation provided by ESMF
+ ESMF_INC_FLG += -I/Users/zender/data/esmf/src/Infrastructure/stubs/mpiuni
+ ESMF_LIB_RT := ${null}
+ ESMF_LIB_LAPACK := -llapack
+ ESMF_LIB_XERCES := -lxerces-c
+else # endif MACOSX
+# Use real MPI
+ ESMF_INC_FLG += -I/usr/include/openmpi-x86_64
+ ESMF_LIB_RT := -lrt
+ ESMF_LIB_LAPACK := ${null}
+ ESMF_LIB_XERCES := ${null}
+endif # endif MACOSX
+ifdef ESMF_LIB
+ ESMF_LIB_FLG := -L${ESMF_LIB} -lesmf ${ESMF_LIB_LAPACK} ${ESMF_LIB_RT} ${ESMF_LIB_XERCES} -lgfortran -ldl -lnetcdff -lnetcdf_c++
+else
+ifdef ESMF_ROOT
+ ESMF_LIB_FLG := -L${ESMF_ROOT}/lib -lesmf ${ESMF_LIB_LAPACK} ${ESMF_LIB_RT} ${ESMF_LIB_XERCES} -lgfortran -ldl -lnetcdff -lnetcdf_c++
+else
+ ESMF_LIB_FLG := -L/usr/local/lib -lesmf ${ESMF_LIB_LAPACK} ${ESMF_LIB_RT} ${ESMF_LIB_XERCES} -lgfortran -ldl -lnetcdff -lnetcdf_c++
+endif # endif ESMF_ROOT
+endif # endif ESMF_LIB
+endif # end if ESMF
+
ifeq (${GSL},Y)
# Build GSL-enabled NCO
# Place GSL block after DAP blocks for both to work together
@@ -384,6 +437,15 @@ else
endif # endif GSL_LIB
endif # end if GSL
+ifeq (${SZ},Y)
+# 20150515: -lsz needed (at least by icc) on rhea
+ifdef SZ_LIB
+ SZ_LIB_FLG := -L${SZ_LIB} -lsz
+else
+ SZ_LIB_FLG := -lsz
+endif # end if SZ_LIB
+endif # end if SZ
+
ifeq (${UDUNITS},Y)
# 20130607: -lexpat needed on .deb systems, not on RPM systems
ifdef UDUNITS_INC
@@ -415,8 +477,8 @@ ifdef LIB_NCAR
NC_LDFLAGS := ${LIB_NCAR} ${NC_LDFLAGS}
endif
-OTHER_CFLAGS := ${NC_CFLAGS} ${MPI_CFLAGS} ${GSL_INC_FLG} ${UDUNITS_INC_FLG}
-OTHER_LDFLAGS := ${NCO_LDFLAGS} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${UDUNITS_LIB_FLG}
+OTHER_CFLAGS := ${ESMF_INC_FLG} ${NC_CFLAGS} ${MPI_CFLAGS} ${GSL_INC_FLG} ${UDUNITS_INC_FLG}
+OTHER_LDFLAGS := ${NCO_LDFLAGS} ${ESMF_LIB_FLG} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${SZ_LIB_FLG} ${UDUNITS_LIB_FLG}
# NB: Do NOT add comment lines, e.g., # This is a comma, to character definitions
null :=
@@ -520,7 +582,7 @@ ${MY_OBJ_DIR}/%.o : %.c
${CC} ${CPPFLAGS} ${CFLAGS} -c $< -o ${MY_OBJ_DIR}/$(notdir $@)
${MY_OBJ_DIR}/%.o : %.cu
nvcc -deviceemu ${CPPFLAGS} ${CFLAGS} -c $< -o ${MY_OBJ_DIR}/$(notdir $@)
-${MY_OBJ_DIR}/%.o : %.cc
+${MY_OBJ_DIR}/%.o : %.ccxb
${CXX} ${CPPFLAGS} ${CXXFLAGS} -c $< -o ${MY_OBJ_DIR}/$(notdir $@)
# Default Fortran pattern rules: CRAY and RS6K must override these rules
@@ -600,6 +662,9 @@ endif # !CNK
ifeq (${DAP},Y)
CPP_TKN_OS += -DENABLE_DAP
endif # !DAP
+ifeq (${ESMF},Y)
+ CPP_TKN_OS += -DENABLE_ESMF
+endif # !ESMF
ifeq (${GSL},Y)
CPP_TKN_OS += -DENABLE_GSL -DHAVE_GSL_H
endif # !GSL
@@ -1004,7 +1069,8 @@ ifeq (icc,$(firstword ${CC}))
# remark #810: conversion from "double" to "float" may lose significant bits
# remark #1572: floating-point equality and inequality comparisons are unreliable
CFLAGS := -w1 -wd274
- CPPFLAGS += -no-gcc
+# Rhea icc 13.1.3 (gcc version 4.4.7 compatibility) requires -D_BSD_SOURCE on files that #include nameser.h, recent transition of gcc 4.9 to -D_DEFAULT_SOURCE does not cut the mustard
+ CPPFLAGS += -no-gcc -D_BSD_SOURCE
LDFLAGS += -lsvml
OMP_FLG_C := -openmp -openmp_report0
ifeq (${OPTS},O)
@@ -1659,7 +1725,7 @@ libnco_c++_tst: ${MY_BLD_DIR}/libnco_c++_tst
${MY_BLD_DIR}/libnco_c++_tst: ${MY_BLD_DIR}/libnco_c++_tst.o lib
${CXX} -o $@${BNR_SFX} $< ${LDFLAGS}
chmod 755 $@${BNR_SFX}
-rpm: ${MY_BLD_DIR}/nco.spec # Building rpm requires root priveleges, e.g., sudo make NCO_VRS=4.4.8 rpm
+rpm: ${MY_BLD_DIR}/nco.spec # Building rpm requires root priveleges, e.g., sudo make NCO_VRS=4.5.0 rpm
# Building NCO RPM requires following packages
# rpm -q bison flex netcdf-devel libtool automake autoconf udunits udunits-devel curl-devel libxml2 libxml2-devel librx-devel
# sudo yum install bison flex netcdf-devel libtool automake autoconf udunits udunits-devel curl-devel libxml2 libxml2-devel librx-devel
@@ -1857,8 +1923,10 @@ ${libnco}.a: ${libnco}.a(${MY_OBJ_DIR}/nco_att_utl.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_netcdf.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_omp.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_pck.o) \
+ ${libnco}.a(${MY_OBJ_DIR}/nco_ppc.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_prn.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_rec_var.o) \
+ ${libnco}.a(${MY_OBJ_DIR}/nco_rgr.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_rth_flt.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_rth_utl.o) \
${libnco}.a(${MY_OBJ_DIR}/nco_scl_utl.o) \
@@ -1993,6 +2061,7 @@ dbg:
@printf "SRC_LST = ${SRC_LST}\n"
@printf "STC = ${STC}\n"
@printf "SZ = ${SZ}\n"
+ @printf "SZ_LIB = ${SZ_LIB}\n"
@printf "TAGS_FILES = ${TAGS_FILES}\n"
@printf "TAGS_FILTER_FILES = ${TAGS_FILTER_FILES}\n"
@printf "THR_NBR = ${THR_NBR}\n"
diff --git a/bld/ddd_mpd.py b/bld/ddd_mpd.py
index 27d85b3..7cc619f 100755
--- a/bld/ddd_mpd.py
+++ b/bld/ddd_mpd.py
@@ -1,7 +1,7 @@
#!/usr/bin/env python
# spawns a ddd session for each one found in mpilistjobs
# nco-specific: sends SIGUSR1 to nodeid>0 processes
-# $Id: ddd_mpd.py,v 1.2 2005/09/26 23:13:38 wangd Exp $
+# $Id$
# Usage:
# ./ddd_mpd.py
diff --git a/bld/libnco_tst.c b/bld/libnco_tst.c
index 69d9c98..90904bf 100644
--- a/bld/libnco_tst.c
+++ b/bld/libnco_tst.c
@@ -23,8 +23,8 @@
#include "libnco.h" /* netCDF Operator (NCO) library */
int main()
{
- const char * const CVS_Id="$Id: libnco_tst.c,v 1.3 2005/07/01 06:51:59 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.3 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
(void)copyright_prn(CVS_Id,CVS_Revision);
}
diff --git a/bld/nco.spec b/bld/nco.spec
index 3a153c6..c7d8e29 100644
--- a/bld/nco.spec
+++ b/bld/nco.spec
@@ -2,17 +2,17 @@ v# Fedora RPMs are up-to-date!
# http://cvs.fedoraproject.org/viewvc/devel/nco/nco.spec?view=co
Name: nco
-Version: 4.4.8
+Version: 4.5.0
Release: 1%{?dist}
Summary: Programs that manipulate netCDF files
Group: Applications/Engineering
License: GPL3
URL: http://nco.sf.net/
-# Obtain NCO version 4.4.8-1 tar.gz from Sourceforge using CVS:
+# Obtain NCO version 4.5.0-1 tar.gz from Sourceforge using CVS:
# cvs -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco login
-# cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4.4.8-1 -d nco-%{version} nco
-# tar czf nco-%{version}.tar.gz --exclude='nco-4.4.8/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude='ncap_yacc.[ch]' ./nco-%{version}
+# cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4.5.0-1 -d nco-%{version} nco
+# tar czf nco-%{version}.tar.gz --exclude='nco-4.5.0/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude='ncap_yacc.[ch]' ./nco-%{version}
Source0: nco-%{version}.tar.gz
#Patch0: nco_install_C_headers.patch
#Patch1: nco_find_udunits-dat.patch
@@ -108,7 +108,13 @@ fi
# %{_libdir}/libnco++.so
%changelog
-* Mon Feb 09 2014 Charlie Zender <zender at uci.edu> - 4.4.8-1
+* Thu Jun 21 2015 Charlie Zender <zender at uci.edu> - 4.5.0-1
+- new upstream 4.5.0
+
+* Thu May 21 2015 Charlie Zender <zender at uci.edu> - 4.4.9-1
+- new upstream 4.4.9
+
+* Mon Feb 09 2015 Charlie Zender <zender at uci.edu> - 4.4.8-1
- new upstream 4.4.8
* Wed Nov 26 2014 Charlie Zender <zender at uci.edu> - 4.4.7-1
diff --git a/bld/nco_dst.pl b/bld/nco_dst.pl
index a675dea..93cf92f 100755
--- a/bld/nco_dst.pl
+++ b/bld/nco_dst.pl
@@ -7,18 +7,18 @@
# Export tagged, public versions
# /usr/bin/scp ${DATA}/nco-4.4.4.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_8 # Build, do not release on SF
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --sf nco-4_4_8 # Build, release on SF
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --nst_all nco-4_4_8 # Install, do not build
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --nst_all nco-4_4_8 # Build and install
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_cnt nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_prs nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cgd_cnt nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cray_prs nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --bbl_cnt nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --blk_cnt nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --dat_cnt nco-4_4_8
-# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --ute_prs nco-4_4_8
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_5_0 # Build, do not release on SF
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --sf nco-4_5_0 # Build, release on SF
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --nst_all nco-4_5_0 # Install, do not build
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln --nst_all nco-4_5_0 # Build and install
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_cnt nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --acd_prs nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cgd_cnt nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --cray_prs nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --bbl_cnt nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --blk_cnt nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --dat_cnt nco-4_5_0
+# ${HOME}/nco/bld/nco_dst.pl --dbg=2 --cln --ute_prs nco-4_5_0
# Export daily snapshot
# ${HOME}/nco/bld/nco_dst.pl --dbg=2
@@ -32,7 +32,7 @@ BEGIN{
unshift @INC,$ENV{'HOME'}.'/perl'; # Location of csz.pl and DBG.pm HaS98 p. 170
} # end BEGIN
-my $CVS_Header='$Header: /cvsroot/nco/nco/bld/nco_dst.pl,v 1.219 2014/12/01 20:51:39 zender Exp $';
+my $CVS_Header='$Header$';
# Specify modules
use strict; # Protect all namespaces
@@ -69,9 +69,9 @@ my ($rsh_cmd,$rcp_cmd,$cp_cmd,$rm_cmd,$mkdir_cmd,$cvs_cmd);
my $False=0;
my $True=1;
-my $CVS_Date='$Date: 2014/12/01 20:51:39 $';
-my $CVS_Id='$Id: nco_dst.pl,v 1.219 2014/12/01 20:51:39 zender Exp $';
-my $CVS_Revision='$Revision: 1.219 $';
+my $CVS_Date='$Date$';
+my $CVS_Id='$Id$';
+my $CVS_Revision='$Revision$';
my $CVSROOT='zender at nco.cvs.sf.net:/cvsroot/nco'; # CVS repository
my $DATA=$ENV{'DATA'};
my $HOME=$ENV{'HOME'};
@@ -131,7 +131,7 @@ if($rm_cmd =~ m/( -r)|( -R)|( --recursive)/){die "$prg_nm: ERROR Dangerous setti
$prg_dsc='NCO distribution maker'; # Program description
($prg_nm,$prg_vrs)=$CVS_Id =~ /: (.+).pl,v ([\d.]+)/; # Program name and version
-$prg_vrs.='*' if length('$Locker: $ ') > 12; # Tack '*' if it is not checked in into CVS.
+$prg_vrs.='*' if length('$Locker$ ') > 12; # Tack '*' if it is not checked in into CVS.
($prg_nm,$pth_in,$fl_sfx)=fileparse($0,''); # $0 is program name Camel p. 136
if(length($CVS_Date) > 6){($prg_date)=unpack '@7 a19',$CVS_Date;}else{$prg_date='Unknown';}
@@ -256,7 +256,7 @@ if($bld){
# Set up FTP server
chdir $dst_pth_pfx or die "$prg_nm: ERROR unable to chdir to $dst_pth_pfx: $!\n"; # $! is system error string
cmd_prc("$cp_cmd $doc_fl ./$dst_vrs/doc"); # Copy derived documentation to source directory
- cmd_prc("$tar_cmd cvzf $dst_fl --exclude='nco-4.4.8/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude=ncap_yacc.[ch] ./$dst_vrs"); # Create gzipped tarfile
+ cmd_prc("$tar_cmd cvzf $dst_fl --exclude='nco-4.5.0/debian*' --exclude='.cvsignore' --exclude=ncap_lex.c --exclude=ncap_yacc.[ch] ./$dst_vrs"); # Create gzipped tarfile
cmd_prc("$rsh_cmd $www_mch $rm_cmd $www_drc/src/$dst_fl"); # Remove any distribution with same name
if($dly_snp){cmd_prc("$rsh_cmd $www_mch $rm_cmd -r $www_drc/src/nco-????????.tar.gz");} # Remove previous daily snapshots from WWW server
cmd_prc("$rcp_cmd $dst_fl $www_mch:$www_drc/src"); # Copy local tarfile to WWW server
diff --git a/bld/pvmgetarch b/bld/pvmgetarch
index 84f2b8d..77f4926 100755
--- a/bld/pvmgetarch
+++ b/bld/pvmgetarch
@@ -1,6 +1,6 @@
#!/bin/sh
-# $Id: pvmgetarch,v 1.9 2013/11/21 00:15:17 pvicente Exp $
+# $Id$
# Purpose: Generate PVM architecture string
diff --git a/bm/NCO_benchmarks.pm b/bm/NCO_benchmarks.pm
index e6636ee..bf2f938 100644
--- a/bm/NCO_benchmarks.pm
+++ b/bm/NCO_benchmarks.pm
@@ -1,6 +1,6 @@
package NCO_benchmarks;
-# $Header: /cvsroot/nco/nco/bm/NCO_benchmarks.pm,v 1.23 2014/12/31 01:50:06 zender Exp $
+# $Header$
# Purpose: library module supporting nco_bm.pl benchmark and regression tests
# File contains BENCHMARK code (as opposed to the REGRESSION tests in "NCO_rgr.pm")
diff --git a/bm/NCO_bm.pm b/bm/NCO_bm.pm
index 026ed8f..1bb3c0d 100644
--- a/bm/NCO_bm.pm
+++ b/bm/NCO_bm.pm
@@ -1,6 +1,6 @@
package NCO_bm;
-# $Header: /cvsroot/nco/nco/bm/NCO_bm.pm,v 1.89 2014/12/31 01:50:06 zender Exp $
+# $Header$
# Purpose: Library for nco_bm.pl benchmark and regression tests
# Module contains following functions:
diff --git a/bm/NCO_rgr.pm b/bm/NCO_rgr.pm
index 1d0ea79..2b60af3 100644
--- a/bm/NCO_rgr.pm
+++ b/bm/NCO_rgr.pm
@@ -1,6 +1,6 @@
package NCO_rgr;
-# $Header: /cvsroot/nco/nco/bm/NCO_rgr.pm,v 1.549 2015/02/09 05:23:41 zender Exp $
+# $Header$
# Purpose: All REGRESSION tests for NCO operators
# BENCHMARKS are coded in "NCO_benchmarks.pm"
@@ -97,19 +97,18 @@ if($? == -1){
# my $exit_value=$? >> 8;
my $exit_value=$?;
- # nco_get_prg_info() returns codes
+ # nco_get_prg_info() returns codes:
# 3 (for library 3.x)
# 410 (for library 4.1.x)
# 430 (for library 4.3.0)
+ # 433 (for library 4.3.3)
if($exit_value >= 400){$RUN_NETCDF4_TESTS=1;}
if($exit_value >= 431){$RUN_NETCDF4_TESTS_VERSION_GE_431=1;}
-
if($exit_value == 410){print "netCDF version 4.1.x detected\n";}
if($exit_value == 431){print "netCDF version 4.3.1 detected\n";}
if($exit_value == 432){print "netCDF version 4.3.2 detected\n";}
if($exit_value == 433){print "netCDF version 4.3.3 detected\n";}
-
}
print "\n";
@@ -131,7 +130,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-# printf("paused @ [%s:%d] - hit return to continue\n", __FILE__, __LINE__); my $wait = <STDIN>;
+# printf("paused @ [%s:%d] - hit return to continue\n", __FILE__, __LINE__); my $wait = <STDIN>;
$dsc_sng="Testing float modulo float";
$tst_cmd[0]="ncap2 -h -O $fl_fmt $nco_D_flg -C -v -s 'tpt_mod=tpt%273.0f' $in_pth_arg in.nc %tmp_fl_00%";
@@ -141,7 +140,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#printf("paused @ [%s:%d] - hit return to continue\n", __FILE__, __LINE__); my $wait = <STDIN>;
+#printf("paused @ [%s:%d] - hit return to continue\n", __FILE__, __LINE__); my $wait = <STDIN>;
$dsc_sng="Testing foo=log(e_flt)^1 (fails on AIX TODO ncap57)";
$tst_cmd[0]="ncap2 -h -O $fl_fmt $nco_D_flg -C -v -s 'foo=log(e_flt)^1' $in_pth_arg in.nc %tmp_fl_00%";
@@ -221,7 +220,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-# printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait=<STDIN>;
+# printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait=<STDIN>;
if($dodap eq "FALSE") {
####################
@@ -231,8 +230,6 @@ print "\n";
####################
#ncatted #1
-
- # FAILS!
$tst_cmd[0]="ncatted -h -O $nco_D_flg -a units,,m,c,'meter second-1' $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -m -v lev %tmp_fl_00% | grep units | cut -d ' ' -f 11-12"; ## daniel:fixme cut/ncks but how to do grep?
$dsc_sng="Modify all existing units attributes to meter second-1";
@@ -241,14 +238,12 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait = <STDIN>;
+#printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait = <STDIN>;
#ncatted #2
-
$tst_cmd[0]="ncatted -h -O $nco_D_flg -a _FillValue,val_one_mss,m,f,0.0 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%g' -d lat,1 -v val_one_mss %tmp_fl_00%";
- $dsc_sng="Change _FillValue attribute from 1.0e36 to 0.0";
- ###TODO 665
+ $dsc_sng="Change _FillValue attribute from 1.0e36 to 0.0 in netCDF3 file";
$tst_cmd[2]="0";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -257,7 +252,7 @@ print "\n";
#ncatted #3
$tst_cmd[0]="ncatted -h -O $nco_D_flg -a _FillValue,wgt_one,c,f,200.0 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%g' -d lat,1 -v wgt_one %tmp_fl_00%";
- $dsc_sng="Create new _FillValue attribute ";
+ $dsc_sng="Create new _FillValue attribute";
$tst_cmd[2]="1";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -275,7 +270,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #5
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a nw1,'^three*',c,i,999 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncap2 -v -C -O -s 'n2=three_dmn_var_int\@nw1;' %tmp_fl_00% %tmp_fl_01%";
$tst_cmd[2]="ncks -O -C -H -s '%i' -v n2 %tmp_fl_01%";
@@ -285,16 +279,15 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#4.3.8
-#ncatted #6
-#ncatted -O -a purpose,rlev,m,c,new_value in_grp_3.nc ~/foo.nc
-
#######################################
#### Group tests (requires netCDF4) ###
#######################################
if($RUN_NETCDF4_TESTS == 1){
+#4.3.8
+#ncatted #6
+#ncatted -O -a purpose,rlev,m,c,new_value in_grp_3.nc ~/foo.nc
$tst_cmd[0]="ncatted -O $nco_D_flg -a purpose,rlev,m,c,new_value $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m -g g3 -v rlev %tmp_fl_00%";
$dsc_sng="(Groups) Modify attribute for variable (input relative name)";
@@ -304,7 +297,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #7
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a purpose,/g3/rlev,m,c,new_value $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m -g g3 -v rlev %tmp_fl_00%";
$dsc_sng="(Groups) Modify attribute for variable (input absolute name)";
@@ -314,7 +306,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #8
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a g3_group_attribute,group,m,c,new_value $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -M %tmp_fl_00% | grep g3_group_attribute";
$dsc_sng="(Groups) Modify attribute for group (input relative name)";
@@ -324,7 +315,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #9
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a nw1,'^three*',c,i,999 $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m -C -g g10 -v three_dmn_rec_var %tmp_fl_00%";
$dsc_sng="(Groups) Variable wildcarding (requires regex)";
@@ -334,7 +324,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #10
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a purpose,,m,c,new_value $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m -g g3 -v rlev %tmp_fl_00%";
$dsc_sng="(Groups) Edit all variables";
@@ -344,7 +333,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncatted #11
-
$tst_cmd[0]="ncatted -O $nco_D_flg -a Conventions,group,m,c,new_value $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -M %tmp_fl_00% | grep Conventions";
$dsc_sng="(Groups) Modify global attribute";
@@ -353,11 +341,21 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
+#ncatted #12
+ $tst_cmd[0]="ncatted -h -O $nco_D_flg -a _FillValue,val_one_mss,m,f,0.0 $in_pth_arg in_grp.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -C -H -s '%g' -d lat,1 -v val_one_mss %tmp_fl_00%";
+ $dsc_sng="Change _FillValue attribute from 1.0e36 to 0.0 on netCDF4 file";
+ ###TODO 665
+ $tst_cmd[2]="0";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
} # $RUN_NETCDF4_TESTS
} #dodap
-# printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait = <STDIN>;
+# printf("paused @ %s:%d - hit return to continue", __FILE__ , __LINE__); my $wait = <STDIN>;
####################
#### ncbo tests ####
@@ -428,7 +426,7 @@ print "\n";
$dsc_sng="_FillValue in one variable (not both variables)";
$tst_cmd[0]="ncrename -h $nco_D_flg -O -v no_mss_val,one_dmn_arr_with_and_without_mss_val $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncrename -h $nco_D_flg -O -v mss_val,one_dmn_arr_with_and_without_mss_val $in_pth_arg in.nc %tmp_fl_01%";
- $tst_cmd[2]="ncbo $omp_flg -h -O $fl_fmt $nco_D_flg -y '-' -v one_dmn_arr_with_and_without_mss_val %tmp_fl_00% %tmp_fl_01% %tmp_fl_02% 2> %tmp_fl_03%";
+ $tst_cmd[2]="ncbo $omp_flg -h -O $fl_fmt $nco_D_flg -y '-' -v one_dmn_arr_with_and_without_mss_val %tmp_fl_00% %tmp_fl_01% %tmp_fl_02% 2> %tmp_fl_03%";
$tst_cmd[3]="ncks -C -H -d lon,0 -s '%f' -v one_dmn_arr_with_and_without_mss_val %tmp_fl_02%";
$tst_cmd[4]=0.0;
$tst_cmd[5]="SS_OK";
@@ -533,7 +531,7 @@ print "\n";
#ncbo #16
# ncbo -O -y add -g g4 -v one_dmn_rec_var ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
+# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
# /g4/one_dmn_rec_var
# time[0]=1 one_dmn_rec_var[0]=2
$dsc_sng="(Groups) Addition -y add -g g4 -v one_dmn_rec_var";
@@ -546,7 +544,7 @@ print "\n";
#ncbo #17
# ncbo -O -y add -g g4 -v one_dmn_rec_var ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
+# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
# /g4/one_dmn_rec_var
$dsc_sng="(Groups) Addition with limits -d time,1,1,1 -y add -g g4 -v one_dmn_rec_var";
@@ -559,7 +557,7 @@ print "\n";
#ncbo #18
# ncbo -O -v one_dmn_rec_var ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
+# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
# /g4/one_dmn_rec_var
$dsc_sng="(Groups) Subtraction -v one_dmn_rec_var";
@@ -572,7 +570,7 @@ print "\n";
#ncbo #19
# ncbo -O -y mlt -g g4 -v one_dmn_rec_var ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
+# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
# /g4/one_dmn_rec_var
$dsc_sng="(Groups) Multiplication with limits -d time,2,2,1 -y add -g g4 -v one_dmn_rec_var";
@@ -585,7 +583,7 @@ print "\n";
#ncbo #20
# ncbo -O -y mlt -g g4 -v one_dmn_rec_var ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
+# ncks -C -H -s '%d' -d time,0,0,1 -g g4 -v one_dmn_rec_var ~/foo.nc
# /g4/one_dmn_rec_var
@@ -1048,11 +1046,14 @@ print "\n";
if($RUN_NETCDF4_TESTS == 1){
# Fragile, depends on cut, expect failure on MACOSX
+# ncks -C -h -O -v area -p ~/nco/data in.nc ~/foo.nc
+# ncecat -C -h -O -G ensemble -d lat,1,1 -v area ~/foo.nc ~/foo.nc ~/foo2.nc
+# ncks -C -O -h -m -v area ~/foo2.nc | grep "ensemble../area" | wc | cut -c 7
#ncecat #3
+ $dsc_sng="Group aggregate variable with hyperslabbing (requires netCDF4)";
$tst_cmd[0]="ncks -C -h -O $fl_fmt $nco_D_flg -v area $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncecat -C -h -O $omp_flg $fl_fmt $nco_D_flg -G ensemble -d lat,1,1 -v area %tmp_fl_00% %tmp_fl_00% %tmp_fl_01%";
$tst_cmd[2]="ncks -C -O -h -m -v area %tmp_fl_01% | grep \"ensemble../area\" | wc | cut -c 7";
- $dsc_sng="group aggregate var with hyperslabbing (requires netCDF4)";
$tst_cmd[3]="2";
$tst_cmd[4]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -1266,7 +1267,7 @@ print "\n";
# ncks -H -C -v time -d time,9,9,1 ~/foo.nc
$dsc_sng="-w 0.8,0.0 in.nc in.nc";
$tst_cmd[0]="ncflint $nco_D_flg -4 -O -w 0.8,0.0 $in_pth_arg in.nc in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -H -C -v time -d time,9,9,1 %tmp_fl_00%";
+ $tst_cmd[1]="ncks -H -C -v time -d time,9,9,1 %tmp_fl_00%";
$tst_cmd[2]="time[9]=8";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -1274,12 +1275,12 @@ print "\n";
#ncflint #7
# ncflint -4 -O -w 0.8,0.0 -p ~/nco/data in.nc in.nc ~/foo.nc
-# ncks -H -C -v time -d time,9,9,1 ~/foo.nc
+# ncks -H -C -v time -d time,9,9,1 ~/foo.nc
# --fix_rec_crd prevents ncflint from multiplying or interpolating any coordinate variables, including record coordinate variables
$dsc_sng="--fix_rec_crd -w 0.8,0.0 in.nc in.nc";
$tst_cmd[0]="ncflint $nco_D_flg -4 -O --fix_rec_crd -w 0.8,0.0 $in_pth_arg in.nc in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -H -C -v time -d time,9,9,1 %tmp_fl_00%";
+ $tst_cmd[1]="ncks -H -C -v time -d time,9,9,1 %tmp_fl_00%";
$tst_cmd[2]="time[9]=10";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -1289,7 +1290,7 @@ print "\n";
#ncflint #8
# ncflint -h -O -g g4 -v one_dmn_rec_var -w 1,1 ~/nco/data/in_grp.nc ~/nco/data/in_grp.nc ~/foo.nc
-# ncks -H -C -O -g g4 -d time,9 -v one_dmn_rec_var ~/foo.nc
+# ncks -H -C -O -g g4 -d time,9 -v one_dmn_rec_var ~/foo.nc
$dsc_sng="(Groups) Weight 1D -g g4 -v one_dmn_rec_var -w 1,1 in_grp.nc in_grp.nc";
$tst_cmd[0]="ncflint $nco_D_flg -h -O -v one_dmn_rec_var -w 1,1 $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
@@ -1350,7 +1351,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #05
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -v int_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v int_var %tmp_fl_00%";
$dsc_sng="extract variable of type NC_INT";
@@ -1360,7 +1360,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #06
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v three_dmn_var -d lat,1,1 -d lev,0,0 -d lev,2,2 -d lon,0,,2 -d lon,1,,2 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%4.1f,' -v three_dmn_var %tmp_fl_00%";
$dsc_sng="Multi-slab lat and lon with srd";
@@ -1370,7 +1369,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #07
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v three_dmn_var -d lat,1,1 -d lev,2,2 -d lon,0,3 -d lon,1,3 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%4.1f,' -v three_dmn_var %tmp_fl_00%";
$dsc_sng="Multi-slab with redundant hyperslabs";
@@ -1380,7 +1378,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #08
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v three_dmn_var -d lat,1,1 -d lev,2,2 -d lon,0.,,2 -d lon,90.,,2 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%4.1f,' -v three_dmn_var %tmp_fl_00%";
$dsc_sng="Multi-slab with coordinates";
@@ -1389,7 +1386,6 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
if(0){ # fxm use this test once script allows error exits to be intended result
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v lat -d lat,20.,20.001 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%4.1f,' -v lat %tmp_fl_00%";
@@ -1401,7 +1397,6 @@ print "\n";
} # endif 0
#ncks #09
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v three_dmn_var -d lat,1,1 -d lev,800.,200. -d lon,270.,0. $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%4.1f,' -v three_dmn_var %tmp_fl_00%";
$dsc_sng="Double-wrapped hyperslab";
@@ -1411,7 +1406,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #10
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -d time_udunits,'1999-12-08 12:00:0.0','1999-12-09 00:00:0.0' $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%6.0f' -d time_udunits,'1999-12-08 18:00:0.0','1999-12-09 12:00:0.0',2 -v time_udunits $in_pth_arg in.nc";
$dsc_sng="dimension slice using UDUnits library (fails without UDUnits library support)";
@@ -1421,7 +1415,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #11
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v lon_cal -d lon_cal,'1964-3-1 00:00:0.0','1964-3-4 00:00:0.0' $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncap2 -O -v -C -s 'lon_cln_ttl=lon_cal.total();print(lon_cln_ttl)' %tmp_fl_00% %tmp_fl_01%";
$tst_cmd[2]="lon_cln_ttl = 10";
@@ -1431,7 +1424,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #12
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v lat_cal -d lat_cal,'1964-3-1 0:00:0.0','1964-3-4 00:00:0.0' $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncap2 -O -v -C -s 'lat_cln_ttl=lat_cal.total();print(lat_cln_ttl)' %tmp_fl_00% %tmp_fl_01%";
$tst_cmd[2]="lat_cln_ttl = 18";
@@ -1441,7 +1433,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #13
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -H -v wvl -d wvl,'0.4 micron','0.7 micron' -s '%3.1e' $in_pth_arg in.nc";
$dsc_sng="dimension slice using UDUnit conversion (fails without UDUnits library support)";
$tst_cmd[1]="1.0e-06";
@@ -1450,7 +1441,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #14
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v '^three_*' $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%g' -C -v three %tmp_fl_00%";
$dsc_sng="variable wildcards A (fails without regex library)";
@@ -1460,7 +1450,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #15
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v '^[a-z]{3}_[a-z]{3}_[a-z]{3,}\$' $in_pth_arg in.nc %tmp_fl_00%";
# for this test, the regex is mod'ed ^
$tst_cmd[1]="ncks -C -H -s '%d' -C -v val_one_int %tmp_fl_00%";
@@ -1481,7 +1470,6 @@ print "\n";
} # endif 0
#ncks #16
-
$tst_cmd[0]="ncks -C -H -s '%d' -v byte_var $in_pth_arg in.nc";
$dsc_sng="Print byte value";
$tst_cmd[1]="122";
@@ -1490,7 +1478,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #17
-
$tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -v cnv_CF_crd $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%g' -v lon_gds -d gds_crd,2 %tmp_fl_00%";
$dsc_sng="CF convention coordinates attribute";
@@ -1500,7 +1487,6 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #18
-
$tst_cmd[0]="ncatted -O $fl_fmt $nco_D_flg -a _FillValue,global,c,l,222 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -O %tmp_fl_00% %tmp_fl_01%";
$tst_cmd[2]="ncap2 -v -O -s 'n2=global\@_FillValue;' %tmp_fl_01% %tmp_fl_02%";
@@ -1590,7 +1576,7 @@ print "\n";
#ncks #26 groups: Extract "bounds" variables (extract /g8/ilev)
$dsc_sng="(Groups) Extract 'bounds' variables";
$tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -v lev $in_pth_arg in_grp.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -a -O -H -s '%g' %tmp_fl_00% ";
+ $tst_cmd[1]="ncks -a -O -H -s '%g' %tmp_fl_00% ";
$tst_cmd[2]="1005001000";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -1619,9 +1605,10 @@ print "\n";
#
#ncks #29 groups: Sort output alphabetically
+# ncks -z ~/nco/data in_grp.nc | tail -1
$dsc_sng="(Groups) Sort output alphabetically";
$tst_cmd[0]="ncks -z $in_pth_arg in_grp.nc | tail -1";
- $tst_cmd[1]="var: /unique";
+ $tst_cmd[1]="var: /val_one_mss";
$tst_cmd[2]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -1878,16 +1865,6 @@ print "\n";
# 1) Limits
# 2) MSA
# 3) Chunking
-#
-# ncks eliminate lmt_all array and replace with GTT (Group Traversal Table)
-#structure that stores full path names for dimensions and coordinate variables.
-# nco_xtr_wrt_trv() writes extracted data to output file
-#nco_xtr_dfn_trv() defines extracted groups, variables, and attributes in output file
-# nco_prn_xtr_val_trv() prints variable data
-#
-# * ncks limits are stored in the GTT dimension structure and MSA is applied.
-# Distribute these to variables when writing with nco_prn_var_val_trv().
-# nco_bld_lmt_trv() assigns user specified dimension limits to traversal table dimensions.
# Chunking tests
@@ -1911,9 +1888,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#
# Limit/MSA tests
-#
#ncks #56:
# ncks -H -C --dmn time,1,3,2 --dmn lev,1,1,1 -v two_dmn_rec_var ~/nco/data/in_grp.nc
@@ -1928,7 +1903,7 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #57:
-# ncks -H -C --dmn time,1,1,1 --dmn time,3,3,1 --dmn lev,0,0,1 --dmn lev,2,2,1 -v two_dmn_rec_var ~/nco/data/in_grp.nc
+# ncks -H -C --dmn time,1,1,1 --dmn time,3,3,1 --dmn lev,0,0,1 --dmn lev,2,2,1 -v two_dmn_rec_var ~/nco/data/in_grp.nc
#/g10/two_dmn_rec_var
#time[1]=2 lev[0]=100 two_dmn_rec_var[3]=1
#time[1]=2 lev[2]=1000 two_dmn_rec_var[5]=3
@@ -2098,7 +2073,7 @@ print "\n";
$#tst_cmd=0; # Reset array
#ncks #71
-# ncks -h -O -C -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in.nc
+# ncks -h -O -C -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in.nc
$dsc_sng="Limits -C -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in.nc";
$tst_cmd[0]="ncks $nco_D_flg -C -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 $in_pth_arg in.nc";
$tst_cmd[1]="time[2]=3 lat[0]=-90 lon[3]=270 three_dmn_var_dbl[19]=20 watt meter-2";
@@ -2108,7 +2083,7 @@ print "\n";
#ncks #72
#same as #70, with group
-# ncks -h -O -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in_grp_3.nc
+# ncks -h -O -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in_grp_3.nc
$dsc_sng="(Groups) Limits -C -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 in.nc";
$tst_cmd[0]="ncks $nco_D_flg -C -g g19g3 -v three_dmn_var_dbl -d time,,2 -d lat,0,0 -d lon,0,0 -d lon,3,3 $in_pth_arg in_grp_3.nc";
$tst_cmd[1]="time[2]=3 lat[0]=-90 lon[3]=270 three_dmn_var_dbl[19]=20 watt meter-2";
@@ -2207,10 +2182,10 @@ print "\n";
#ncks #81
# There are two 'two_dmn_var' beneath /g19/g19g1, chunk the deeper and check the shallower was not chunked
#ncks -O -4 --cnk_dmn /g19/g19g1/g19g1g1/lev,1 -v two_dmn_var ~/nco/data/in_grp_7.nc ~/foo.nc
-#ncks -m -C -v /g19/g19g1/two_dmn_var --hdn ~/foo.nc | grep chunked | cut -d ' ' -f 8-9
+#ncks -m -C -v /g19/g19g1/two_dmn_var --hdn ~/foo.nc | grep chunked | cut -d ' ' -f 10-11
$dsc_sng="(Groups) Chunking full dimension name does not chunk variables in parent group";
$tst_cmd[0]="ncks -O -4 --cnk_dmn /g19/g19g1/g19g1g1/lev,1 -v two_dmn_var $nco_D_flg $in_pth_arg in_grp_7.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -m -C -v /g19/g19g1/two_dmn_var --hdn %tmp_fl_00% | grep chunked | cut -d ' ' -f 8-9";
+ $tst_cmd[1]="ncks -m -C -v /g19/g19g1/two_dmn_var --hdn %tmp_fl_00% | grep chunked | cut -d ' ' -f 10-11";
$tst_cmd[2]="chunked? no,";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -2360,20 +2335,6 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
- if($RUN_NETCDF4_TESTS_VERSION_GE_431 == 1){
-
-#ncks #93
-#ncks -O -D 5 -C -d lat,0 -v one,four --cnk_plc=xst --cnk_map=xst ~/nco/data/hdn.nc ~/foo.nc
- $dsc_sng="Chunking multiple variables while hyperslabbing";
- $tst_cmd[0]="ncks -O $nco_D_flg -C -d lat,0 -v one,four --cnk_plc=xst --cnk_map=xst $in_pth_arg hdn.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -v one %tmp_fl_00% | grep 'chunksize'";
- $tst_cmd[2]="one dimension 0: /lat, size = 1, chunksize = 1 (Non-coordinate dimension)";
- $tst_cmd[3]="SS_OK";
- NCO_bm::tst_run(\@tst_cmd);
- $#tst_cmd=0; # Reset array
-
- } # RUN_NETCDF4_TESTS_VERSION_GE_431
-
#ncks #94
#ncks -O -C -H -d lon,-1 -v lon ~/nco/data/in.nc
$dsc_sng="Select last element using negative one index";
@@ -2478,7 +2439,7 @@ print "\n";
$dsc_sng="Test NSD compression rounding to three significant digits";
$tst_cmd[0]="ncks -O $nco_D_flg -4 -C -v ppc_big,ppc_dbl --ppc ppc_big,ppc_dbl=3 $in_pth_arg in.nc %tmp_fl_00";
$tst_cmd[1]="ncks -H -d time,5 -s %g -v ppc_big %tmp_fl_00";
- $tst_cmd[2]="1234.5";
+ $tst_cmd[2]="1235";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -2511,6 +2472,54 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
+#ncks #105
+# Test that -x exclusion of coordinate variables only works with -C
+# fxm: -x is not directly tested because it means testing for non-existance in output. how to do this?
+# ncks -O -x -v time ~/nco/data/in.nc ~/foo.nc
+# ncks -H -C -d time,0 -v time ~/foo.nc
+ $dsc_sng="Test that -x exclusion of coordinate variables only works with -C";
+ $tst_cmd[0]="ncks -O $nco_D_flg -x -v time $in_pth_arg in.nc %tmp_fl_00";
+ $tst_cmd[1]="ncks -H $nco_D_flg -d time,0 -C -v time %tmp_fl_00";
+ $tst_cmd[2]="time[0]=1";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
+#ncks #106 Extract "climatology" variables
+# ncks -O -v one_dmn_rec_var ~/nco/data/in.nc ~/foo.nc
+# ncks -O -C -H -v climatology_bounds -d time,9 -d vrt_nbr,1 -s '%g' ~/foo.nc
+ $dsc_sng="Extract 'climatology' variables";
+ $tst_cmd[0]="ncks -O $fl_fmt $nco_D_flg -v one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -O -C -H -v climatology_bounds -d time,9 -d vrt_nbr,1 -s '%g' %tmp_fl_00% ";
+ $tst_cmd[2]="10.5";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
+ if($RUN_NETCDF4_TESTS_VERSION_GE_431 == 1){
+
+#ncks #93
+#ncks -O -D 5 -C -d lat,0 -v one,four --cnk_plc=xst --cnk_map=xst ~/nco/data/hdn.nc ~/foo.nc
+ $dsc_sng="Chunking multiple variables while hyperslabbing";
+ $tst_cmd[0]="ncks -O $nco_D_flg -C -d lat,0 -v one,four --cnk_plc=xst --cnk_map=xst $in_pth_arg hdn.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -v one %tmp_fl_00% | grep 'chunksize'";
+ $tst_cmd[2]="one dimension 0: /lat, size = 1, chunksize = 1 (Non-coordinate dimension)";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
+#ncks #107
+#ncks -O -D 5 -C -d lat,0 -v var_shf --cnk_plc=uck ~/nco/data/hdn.nc ~/foo.nc
+ $dsc_sng="Unchunking variable with Shuffle flag set";
+ $tst_cmd[0]="ncks -O $nco_D_flg -C -v var_shf --cnk_plc=uck $in_pth_arg hdn.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks --hdn -v var_shf %tmp_fl_00% | grep 'Storage'";
+ $tst_cmd[2]="var_shf attribute 1: _Storage, size = 10 NC_CHAR, value = contiguous";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
+ } # RUN_NETCDF4_TESTS_VERSION_GE_431
+
#####################
#### ncpdq tests #### -OK !
#####################
@@ -2588,7 +2597,7 @@ print "\n";
#NEW NCO 4.3.2
#ncpdq #7 MSA stride
-#ncpdq -h -O -a lat,lon,time -d time,1,3,2 -d lat,1,1,1 -d lon,1,3,2 -v three_dmn_var_dbl in.nc ~/foo.nc
+#ncpdq -h -O -a lat,lon,time -d time,1,3,2 -d lat,1,1,1 -d lon,1,3,2 -v three_dmn_var_dbl in.nc ~/foo.nc
#ncks -C -H -v three_dmn_var_dbl -d lat,0,0 -d lon,1,1 -d time,0 ~/foo.nc
#lat[0]=90 lon[1]=270 time[0]=2 three_dmn_var_dbl[2]=16
@@ -2624,7 +2633,7 @@ print "\n";
#ncpdq #10
# two_dmn_var (lat,lev) no change
# ncpdq -O -C -a lat,lev -v two_dmn_var ~/nco/data/in.nc ~/foo.nc
-# ncks -d lat,1,1 -d lev,1,1 ~/foo.nc
+# ncks -d lat,1,1 -d lev,1,1 ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg -O -C $fl_fmt $nco_D_flg -a lat,lev -v two_dmn_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -v two_dmn_var -d lat,1,1 -d lev,1,1 %tmp_fl_00%";
@@ -2652,7 +2661,7 @@ print "\n";
#ncpdq #12
# two_dmn_var (lat,lev) no MSA (associated coordinates)
# ncpdq -O -a lev,lat -v two_dmn_var ~/nco/data/in.nc ~/foo.nc
-# ncks -C -d lat,1,1 -d lev,1,1 ~/foo.nc
+# ncks -C -d lat,1,1 -d lev,1,1 ~/foo.nc
#$tst_cmd[2]="lev[1]=500 lat[1]=90 two_dmn_var[3]=17.5 fraction";
$tst_cmd[0]="ncpdq $omp_flg -O $fl_fmt $nco_D_flg -a lev,lat -v two_dmn_var $in_pth_arg in.nc %tmp_fl_00%";
@@ -2696,10 +2705,10 @@ print "\n";
#ncpdq #15
# two_dmn_rec_var(time,lev) 2D variable with record (-C, no MSA)
# ncpdq -O -C -a lev,time -v two_dmn_rec_var ~/nco/data/in.nc ~/foo.nc
-# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
+# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg -O $fl_fmt $nco_D_flg -C -a lev,time -v two_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -v two_dmn_rec_var -d time,1,1 -d lev,1,1 %tmp_fl_00%";
+ $tst_cmd[1]="ncks -v two_dmn_rec_var -d time,1,1 -d lev,1,1 %tmp_fl_00%";
$dsc_sng="Re-order 2D variable with record (-C, no MSA) -v two_dmn_rec_var -C -a lev,time";
$tst_cmd[2]="lev[1] time[1] two_dmn_rec_var[11]=2.1 watt meter-2";
$tst_cmd[3]="SS_OK";
@@ -2711,7 +2720,7 @@ print "\n";
#ncpdq #16
# two_dmn_rec_var(time,lev) 2D variable with record (no MSA)
# ncpdq -O -a lev,time -v two_dmn_rec_var ~/nco/data/in.nc ~/foo.nc
-# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
+# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg -O $fl_fmt $nco_D_flg -a lev,time -v two_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -v two_dmn_rec_var -d time,1,1 -d lev,1,1 %tmp_fl_00%";
@@ -2811,7 +2820,7 @@ print "\n";
#ncpdq -h -O -a lat,time -v ty,three_dmn_rec_var -d time,1,6,2 -d lat,1,1 in.nc ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg $fl_fmt $nco_D_flg -h -O -a lat,time -v ty,three_dmn_rec_var -d time,1,6,2 -d lat,1,1 $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -C -H -v three_dmn_rec_var -d lat,0,0 -d time,1,1 -d lon,1,1 %tmp_fl_00%";
+ $tst_cmd[1]="ncks -C -H -v three_dmn_rec_var -d lat,0,0 -d time,1,1 -d lon,1,1 %tmp_fl_00%";
$dsc_sng="Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test2 read three_dmn_rec_var";
$tst_cmd[2]="lat[0]=90 time[1]=4 lon[1]=90 three_dmn_rec_var[5]=30";
$tst_cmd[3]="SS_OK";
@@ -2850,10 +2859,10 @@ print "\n";
#ncpdq #26
#four_dmn_rec_var(time,lat,lev,lon); MSA
#ncpdq -h -O -a lev,time,-lon,-lat -v four_dmn_rec_var -d time,1,6,2 -d lat,1,1 -d lon,1,1 -d lev,1,1 in.nc ~/foo.nc
-#ncks -C -H -v four_dmn_rec_var -d time,2,2 ~/foo.nc
+#ncks -C -H -v four_dmn_rec_var -d time,2,2 ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg $fl_fmt $nco_D_flg -h -O -a lev,time,-lon,-lat -v four_dmn_rec_var -d time,1,6,2 -d lat,1,1 -d lon,1,1 -d lev,1,1 $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -C -H -v four_dmn_rec_var -d time,2,2 %tmp_fl_00%";
+ $tst_cmd[1]="ncks -C -H -v four_dmn_rec_var -d time,2,2 %tmp_fl_00%";
$dsc_sng="Reverse/Re-order 4D variable -a lev,time,-lon,-lat -v four_dmn_rec_var (MSA)";
$tst_cmd[2]="lev[0]=500 time[2]=6 lon[0]=90 lat[0]=90 four_dmn_rec_var[2]=138";
$tst_cmd[3]="SS_OK";
@@ -2865,7 +2874,7 @@ print "\n";
#PS(time,lat,lon)
#three_dmn_var_crd(lev,lat,lon);
#ncpdq -h -O -a lat,time -v PS,three_dmn_var_crd -d lev,1,1 -d lat,1,1 -d lon,1,1 -d lev,1,1 in.nc ~/foo.nc
-#ncks -C -H -v three_dmn_var_crd ~/foo.nc
+#ncks -C -H -v three_dmn_var_crd ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg $fl_fmt $nco_D_flg -h -O -a lat,time -v PS,three_dmn_var_crd -d lev,1,1 -d lat,1,1 -d lon,1,1 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -H -C -v three_dmn_var_crd %tmp_fl_00%";
@@ -2878,7 +2887,7 @@ print "\n";
#NEW NCO 4.3.2
#ncpdq #28
#ncpdq -h -O -a lat,time -d time,1,6,2 -d lat,1,1 in.nc ~/foo.nc
-#ncks -C -H -v -d time,2,2 four_dmn_rec_var ~/foo.nc
+#ncks -C -H -v -d time,2,2 four_dmn_rec_var ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg $fl_fmt $nco_D_flg -h -O -a lat,time -d time,1,1 -d lat,1,1 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -v four_dmn_rec_var -d lon,2,2 -d lev,2,2 %tmp_fl_00%";
@@ -2967,7 +2976,7 @@ print "\n";
#ncpdq #12
# two_dmn_var (lat,lev) no -C, no MSA
# ncpdq -O -a lev,lat -v two_dmn_var ~/nco/data/in.nc ~/foo.nc
-# ncks -C -d lat,1,1 -d lev,1,1 ~/foo.nc
+# ncks -C -d lat,1,1 -d lev,1,1 ~/foo.nc
# same as previous but with group
@@ -3045,7 +3054,7 @@ print "\n";
#ncpdq #15
# two_dmn_rec_var(time,lev) 2D variable with record (-C, no MSA)
# ncpdq -O -C -a lev,time -v two_dmn_rec_var ~/nco/data/in.nc ~/foo.nc
-# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
+# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
# same as previous but with group
@@ -3054,7 +3063,7 @@ print "\n";
# group: g19 {
# dimensions:lat=2;lev=3;lon=4;time=unlimited;
# ncpdq -O -g g19g2 -C -a lev,time -v two_dmn_rec_var ~/nco/data/in_grp_3.nc ~/foo.nc
-# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
+# ncks -d time,1,1 -d lev,1,1 ~/foo.nc
$tst_cmd[0]="ncpdq $omp_flg $fl_fmt $nco_D_flg -O -g g19g2 -C -a lev,time -v two_dmn_rec_var $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -g g19g2 -v two_dmn_rec_var -d time,1,1 -d lev,1,1 %tmp_fl_00%";
@@ -3597,7 +3606,7 @@ print "\n";
$tst_cmd[0]="ncks $omp_flg -h -O $fl_fmt $nco_D_flg -g g4 -v one_dmn_rec_var $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncrcat $omp_flg -h --no_tmp_fl --rec_apn $fl_fmt $nco_D_flg -g g4 -v one_dmn_rec_var $in_pth_arg in_grp.nc %tmp_fl_00%";
- $tst_cmd[2]="ncks -C -g g4 -v one_dmn_rec_var %tmp_fl_00%";
+ $tst_cmd[2]="ncks -C -g g4 -v one_dmn_rec_var %tmp_fl_00%";
$dsc_sng="(Groups) Append records to existing file without copying original (Group with 1 record case)";
$tst_cmd[3]="time[19]=10 one_dmn_rec_var[19]=10 kelvin";
$tst_cmd[4]="SS_OK";
@@ -3644,7 +3653,6 @@ print "\n";
####################
# ncra #01
-
# if($mpi_prc == 0 || ($mpi_prc > 0 && $localhostname !~ /sand/)){ # test hangs because of ncrcat TODO nco772
$dsc_sng="record sdn of float with double missing values across two files";
$tst_cmd[0]="ncra -Y ncrcat $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_01% 2> %tmp_fl_00%";
@@ -3659,7 +3667,6 @@ print "\n";
# } else { print "NB: Current mpncra test skipped on sand because mpncrcat step hangs fxm TODO nco593\n";}
# ncra #02
-
$dsc_sng="record mean of int across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v one_dmn_rec_var $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v one_dmn_rec_var %tmp_fl_00%";
@@ -3669,7 +3676,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #03
-
$dsc_sng="record mean of float with double missing values";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3679,7 +3685,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #04
-
$dsc_sng="record mean of float with integer missing values";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_flt_mss_val_int $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_int %tmp_fl_00%";
@@ -3689,7 +3694,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #05
-
$dsc_sng="record mean of integer with integer missing values";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_int_mss_val_int $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v rec_var_int_mss_val_int %tmp_fl_00%";
@@ -3699,7 +3703,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #06
-
$dsc_sng="record mean of integer with integer missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_int_mss_val_int $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v rec_var_int_mss_val_int %tmp_fl_00%";
@@ -3709,7 +3712,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #07
-
$dsc_sng="record mean of integer with float missing values";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_int_mss_val_flt $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v rec_var_int_mss_val_flt %tmp_fl_00%";
@@ -3719,7 +3721,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #08
-
$dsc_sng="record mean of integer with float missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_int_mss_val_flt $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v rec_var_int_mss_val_flt %tmp_fl_00%";
@@ -3729,7 +3730,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #09
-
$dsc_sng="record mean of packed double with double missing values";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_dbl_mss_val_dbl_pck $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_dbl_mss_val_dbl_pck %tmp_fl_00%";
@@ -3739,7 +3739,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #10
-
$dsc_sng="record mean of packed double to test precision";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_dbl_pck $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_dbl_pck %tmp_fl_00%";
@@ -3749,7 +3748,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #11
-
$dsc_sng="record mean of packed float to test precision";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v rec_var_flt_pck $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%3.2f' -v rec_var_flt_pck %tmp_fl_00%";
@@ -3759,7 +3757,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #12
-
$dsc_sng="pass through non-record (i.e., non-processed) packed data to output";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -v pck,one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v pck %tmp_fl_00%";
@@ -3769,7 +3766,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #13
-
$dsc_sng="record mean of float with double missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y avg -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3779,7 +3775,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #14
-
$dsc_sng="record min of float with double missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3789,7 +3784,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #15
-
$dsc_sng="record max of float with double missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3799,7 +3793,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #16
-
$dsc_sng="record ttl of float with double missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3809,7 +3802,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #17
-
$dsc_sng="record rms of float with double missing values across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y rms -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%1.5f' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
@@ -3819,7 +3811,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #18
-
$dsc_sng="Return mean time coordinate (when computing totals) across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -v time,one_dmn_rec_var $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v time %tmp_fl_00%";
@@ -3829,7 +3820,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #19
-
$dsc_sng="Return total record (when computing totals) across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -v time,one_dmn_rec_var $in_pth_arg in.nc in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v one_dmn_rec_var %tmp_fl_00%";
@@ -3839,7 +3829,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #20
-
$dsc_sng="Return record average of cell-based geodesic data";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -X 0.,180.,-30.,30. -v gds_3dvar $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%8.1f' -v gds_3dvar %tmp_fl_00%";
@@ -3849,7 +3838,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #21
-
$tst_cmd[0]="/bin/rm -f %tmp_fl_00%";
$tst_cmd[1]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -C $in_pth_arg lrg_bm.nc lrg_bm1.nc %tmp_fl_00%";
$tst_cmd[2]="ncra -t 1 -h -O $fl_fmt $nco_D_flg -C $in_pth_arg lrg_bm.nc lrg_bm1.nc %tmp_fl_01%";
@@ -3863,7 +3851,6 @@ print "\n";
$#tst_cmd=0; # Reset array
# ncra #22
-
$tst_cmd[0]="ncks $omp_flg -h -O $fl_fmt $nco_D_flg -v one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncra $omp_flg -h --no_tmp_fl --rec_apn $fl_fmt $nco_D_flg -v one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[2]="ncks -C -H -s '%d' -d time,10 -v one_dmn_rec_var %tmp_fl_00%";
@@ -3881,7 +3868,6 @@ print "\n";
# ncra #23
# same as ncra #02, for groups
-
$dsc_sng="(Groups) 1 group -g g4 -v one_dmn_rec_var record mean of int across two files";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g4 -v one_dmn_rec_var $in_pth_arg in_grp.nc in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -g g4 -v one_dmn_rec_var %tmp_fl_00%";
@@ -3890,10 +3876,8 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
# ncra #24
# (Groups) 1 record to process in 1 group
-
$dsc_sng="(Groups) 1 record to process in 1 group -g g23 (do variable and record in group) ";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g23 $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g23 -v time %tmp_fl_00%";
@@ -3904,7 +3888,6 @@ print "\n";
# ncra #25
# (Groups) 2 records to process in 2 groups (part 1)
-
$dsc_sng="(Groups) 2 records to process in 2 groups (part 1) (do record in group only)";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g23,g24 -v time $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g23 -v time %tmp_fl_00%";
@@ -3915,7 +3898,6 @@ print "\n";
# ncra #26
# (Groups) 2 records to process in 2 groups (part 2)
-
$dsc_sng="(Groups) 2 records to process in 2 groups (part 2) (do record in group only)";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g23,g24 -v time $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g24 -v time %tmp_fl_00%";
@@ -3927,7 +3909,6 @@ print "\n";
# ncra #27
# (Groups) 1D var 2 records to process in 2 groups (part 1)
# ncra -h -O -g g25g1,g25g2 -p ~/nco/data in_grp_3.nc in_grp_3.nc ~/foo.nc
-
$dsc_sng="(Groups) 2 records to process in 2 groups (part 1) (1D variable and record in group)";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g25g1,g25g2 $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -g g25g1 -v one_dmn_rec_var %tmp_fl_00%";
@@ -3939,7 +3920,6 @@ print "\n";
# ncra #28 same as #27
# (Groups) 1D var 2 records to process in 2 groups (part 2)
# ncra -h -O -g g25g1,g25g2 -p ~/nco/data in_grp_3.nc in_grp_3.nc ~/foo.nc
-
$dsc_sng="(Groups) 2 records to process in 2 groups (part 2) (1D variable and record in group)";
$tst_cmd[0]="ncra $omp_flg -h -O $fl_fmt $nco_D_flg -g g25g1,g25g2 $in_pth_arg in_grp_3.nc in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -g g25g2 -v one_dmn_rec_var %tmp_fl_00%";
@@ -3953,7 +3933,6 @@ print "\n";
# ncpdq -O -a time,record ~/foo1.nc ~/foo2.nc # switch "record" and "time"
# ncra -O ~/foo2.nc ~/foo.nc
# ncks -C -g g25g1 -v one_dmn_rec_var ~/foo.nc
-
$dsc_sng="(Groups) 2 records in 1 group ('time' same as record, 1st record)";
$tst_cmd[0]="ncecat $omp_flg -h -O $fl_fmt $nco_D_flg -g g25g1 $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncpdq $omp_flg -h -O $fl_fmt $nco_D_flg -a time,record %tmp_fl_00% %tmp_fl_01%";
@@ -3970,7 +3949,6 @@ print "\n";
# ncks -O -a -v one,time ~/nco/data/in.nc ~/foo2.nc
# ncra -O -p ~ foo1.nc foo2.nc ~/foo3.nc
# ncks -C -H -v one ~/foo3.nc
-
$dsc_sng="Concatenate variables with different ID ordering";
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -C -v time,one $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -h -O $fl_fmt $nco_D_flg -C -a -v one,time $in_pth_arg in.nc %tmp_fl_01%";
@@ -3995,7 +3973,7 @@ print "\n";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
- #######################################
+ ######################################
#### Group tests (requires netCDF4) ###
#######################################
@@ -4029,9 +4007,18 @@ if(0){
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-#print "paused - hit return to continue"; my $wait=<STDIN>;
-#print "<<<STOP>>>- hit return to continue"; my $wait=<STDIN>;
-
+# ncra #34
+# Test per-file weighting
+# ncra -O -D 6 -w 28,29,30 -n 3,4,1 -p ${HOME}/nco/data h0001.nc ~/foo.nc
+# ncks -C -H -s '%g, ' -v two_dmn_rec_var ~/foo.nc
+ $dsc_sng="Test per-file weighting with --wgt";
+ $tst_cmd[0]="ncra -h -O $fl_fmt $nco_D_flg -w 28,29,30 $in_pth_arg in.nc in.nc in.nc %tmp_fl_00%";
+ $tst_cmd[1]="ncks -C -H -s '%g, ' -v two_dmn_rec_var %tmp_fl_00%";
+ $tst_cmd[2]="1, 2.45, 3,";
+ $tst_cmd[3]="SS_OK";
+ NCO_bm::tst_run(\@tst_cmd);
+ $#tst_cmd=0; # Reset array
+
####################
#### ncwa tests #### OK!
####################
@@ -4039,7 +4026,6 @@ if(0){
####################
#ncwa #1
-
$tst_cmd[0]="ncks -h -O $fl_fmt $nco_D_flg -v lat_T42,lon_T42,gw_T42 $in_pth_arg in.nc %tmp_fl_03%";
$tst_cmd[1]="ncrename -h -O $nco_D_flg -d lat_T42,lat -d lon_T42,lon -v lat_T42,lat -v gw_T42,gw -v lon_T42,lon %tmp_fl_03%";
$tst_cmd[2]="ncap2 -h -O $fl_fmt $nco_D_flg -s 'one[lat,lon]=lat*lon*0.0+1.0' -s 'zero[lat,lon]=lat*lon*0.0' %tmp_fl_03% %tmp_fl_04%";
@@ -4051,7 +4037,6 @@ if(0){
@tst_cmd=(); # really reset array.
#ncwa #2
-
push(@tst_cmd, "ncks -h -O $fl_fmt $nco_D_flg -v lat_T42,lon_T42,gw_T42 $in_pth_arg in.nc %tmp_fl_03%");
push(@tst_cmd, "ncrename -h -O $nco_D_flg -d lat_T42,lat -d lon_T42,lon -v lat_T42,lat -v gw_T42,gw -v lon_T42,lon %tmp_fl_03%");
push(@tst_cmd, "ncap2 -h -O $fl_fmt $nco_D_flg -s 'one[lat,lon]=lat*lon*0.0+1.0' -s 'zero[lat,lon]=lat*lon*0.0' %tmp_fl_03% %tmp_fl_04%");
@@ -4067,7 +4052,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #3
-
# 20140207: Behavior changed to comply with documentation that coordinate variables always return averages, never extrema or other statistics
# Hence request for min(lat) should actually return avg(lat) = 0 != -90
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v lat $in_pth_arg in.nc %tmp_fl_00%";
@@ -4079,7 +4063,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #4
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a time -v pck,one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v pck %tmp_fl_00%";
$dsc_sng="pass through non-averaged (i.e., non-processed) packed data to output";
@@ -4089,7 +4072,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #5
-
$tst_cmd[0]="ncwa -N $omp_flg -h -O $fl_fmt $nco_D_flg -a lat,lon -w gw $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v mask %tmp_fl_00%";
$dsc_sng="do not normalize by denominator (FAILURE netCDF4 nco946)";
@@ -4099,7 +4081,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #6
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a lon -v mss_val $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v mss_val %tmp_fl_00%";
$dsc_sng="average with missing value attribute";
@@ -4109,7 +4090,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #7
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a lon -v no_mss_val $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%g' -v no_mss_val %tmp_fl_00%";
$dsc_sng="average without missing value attribute";
@@ -4119,7 +4099,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #8
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lat -m lat -M 90.0 -T eq -a lat $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v lat %tmp_fl_00%";
$dsc_sng="average masked coordinate";
@@ -4129,7 +4108,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #9
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lat_var -m lat -M 90.0 -T eq -a lat $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v lat_var %tmp_fl_00%";
$dsc_sng="average masked variable";
@@ -4139,7 +4117,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #10
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -m lev -M 100.0 -T eq -a lev -w lev_wgt $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v lev %tmp_fl_00%";
$dsc_sng="average masked, weighted coordinate";
@@ -4149,7 +4126,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #11
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev_var -m lev -M 100.0 -T gt -a lev -w lev_wgt $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v lev_var %tmp_fl_00%";
$dsc_sng="average masked, weighted variable";
@@ -4159,7 +4135,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #12
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lat -a lat -w gw -d lat,0 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v lat %tmp_fl_00%";
$dsc_sng="weight conforms to variable first time";
@@ -4169,7 +4144,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #13
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v mss_val_all -a lon -w lon $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H --no_blank -s '%g' -v mss_val_all %tmp_fl_00%";
$dsc_sng="average all missing values with weights";
@@ -4179,7 +4153,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #14
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v val_one_mss -a lat -w wgt_one $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v val_one_mss %tmp_fl_00%";
$dsc_sng="average some missing values with unity weights";
@@ -4189,7 +4162,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #15
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v msk_prt_mss_prt -m msk_prt_mss_prt -M 1.0 -T lt -a lon $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v msk_prt_mss_prt %tmp_fl_00%";
$dsc_sng="average masked variable with some missing values";
@@ -4199,7 +4171,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #16
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -w area -v area -a lat $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v area %tmp_fl_00%";
$dsc_sng="average uniform field with uniform weights";
@@ -4209,7 +4180,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #17
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -w area_asm -v area -a lat $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v area %tmp_fl_00%";
$dsc_sng="average uniform field with asymmetric weights";
@@ -4219,7 +4189,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #18
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -w area_asm -v area2 -a lat $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%e' -v area2 %tmp_fl_00%";
$dsc_sng="average asymmetric field with asymmetric weights";
@@ -4229,7 +4198,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #19
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v rec_var_flt_mss_val_dbl $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%e' -v rec_var_flt_mss_val_dbl %tmp_fl_00%";
$dsc_sng="min switch on type double, some missing values";
@@ -4239,7 +4207,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #20
-
# will fail SS - ncks not the last cmd
@tst_cmd=(); # really reset array. $#tst_cmd=0; sets last index=0 --> list has one element.
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_dbl -a lon $in_pth_arg in.nc %tmp_fl_00%");
@@ -4252,7 +4219,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #21
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_dbl -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%f' -v three_dmn_var_dbl -d time,9 -d lat,1 %tmp_fl_00%");
@@ -4265,7 +4231,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #22
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_int -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_int -d time,2 -d lat,0 %tmp_fl_00%");
@@ -4277,7 +4242,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #23
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_int -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_int -d time,3 -d lat,0 %tmp_fl_00%");
@@ -4290,7 +4254,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #24
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_sht -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_sht -d time,9 -d lat,1 %tmp_fl_00%");
@@ -4302,7 +4265,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #25
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_var_sht -a lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_sht -d time,3 -d lat,1 %tmp_fl_00%");
@@ -4315,7 +4277,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #26
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -v three_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%f' -v three_dmn_rec_var %tmp_fl_00%";
$dsc_sng="Dimension reduction with min flag on type float variable";
@@ -4325,7 +4286,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #27
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v four_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%f' -v four_dmn_rec_var %tmp_fl_00%";
$dsc_sng="Max flag on type float variable";
@@ -4336,7 +4296,6 @@ if(0){
#ncwa #28
# ncwa -h -O -y max -v three_dmn_var_dbl -a lat,lon in.nc ~/foo.nc
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_dbl -a lat,lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%f' -v three_dmn_var_dbl -d time,3 %tmp_fl_00%");
@@ -4348,7 +4307,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #29
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_dbl -a lat,lon $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%f' -v three_dmn_var_dbl -d time,4 %tmp_fl_00%");
@@ -4361,7 +4319,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #30
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_int -a lat $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_int -d time,2 -d lon,0 %tmp_fl_00%");
@@ -4373,7 +4330,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #31
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_int -a lat $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_int -d time,3 -d lon,0 %tmp_fl_00%");
@@ -4386,7 +4342,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #32
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_sht -a lat $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%d' -v three_dmn_var_sht -d time,9 -d lon,0 %tmp_fl_00%");
@@ -4398,7 +4353,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #33
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -v three_dmn_var_sht -a lat $in_pth_arg in.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%d' -v three_dmn_var_sht -d time,8 -d lon,0 %tmp_fl_00%");
@@ -4411,7 +4365,6 @@ if(0){
@tst_cmd=(); # Reset array
#ncwa #34
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y rms -w lat_wgt -v lat_cpy $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%f' -v lat_cpy %tmp_fl_00%";;
$dsc_sng="rms with weights";
@@ -4421,7 +4374,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #35
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -w val_half_half -v val_one_one_int $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%d' -v val_one_one_int %tmp_fl_00%";;
$dsc_sng="weights would cause SIGFPE without dbl_prc patch";
@@ -4431,7 +4383,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #36
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y avg -v val_max_max_sht $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%d' -v val_max_max_sht %tmp_fl_00%";;
$dsc_sng="avg would overflow without dbl_prc patch";
@@ -4441,7 +4392,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #37
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -v val_max_max_sht $in_pth_arg in.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%d' -v val_max_max_sht %tmp_fl_00%";
$dsc_sng="test wrapped ttl with dbl_prc patch (harmless failure expected/OK on all chips since wrap behavior is not IEEE-specified)";
@@ -4456,7 +4406,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #38
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -a lat -v lat_cpy -w gw $in_pth_arg in.nc %tmp_fl_00%";;
$tst_cmd[1]="ncks -C -H -s '%g' -v lat_cpy %tmp_fl_00%";;
$dsc_sng="min with weights";
@@ -4466,7 +4415,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #39
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -a lat -v lat_cpy -w gw $in_pth_arg in.nc %tmp_fl_00%";;
$tst_cmd[1]="ncks -C -H -s '%g' -v lat_cpy %tmp_fl_00%";;
$dsc_sng="max with weights";
@@ -4476,7 +4424,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #40
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -a time -w one -v time,one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%f' -v time %tmp_fl_00%";
$dsc_sng="Return mean time coordinate (when computing totals)";
@@ -4486,7 +4433,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #41
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y ttl -a time -w one -v time,one_dmn_rec_var $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -s '%d' -v one_dmn_rec_var %tmp_fl_00%";
$dsc_sng="Return total record (when computing totals)";
@@ -4495,9 +4441,7 @@ if(0){
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
-
#ncwa #42
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a lon -b -v lon $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -v lon %tmp_fl_00%";
$dsc_sng="Retain degenerate dimensions (one variable)";
@@ -4507,7 +4451,6 @@ if(0){
$#tst_cmd=0; # Reset array
#ncwa #43
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a lon -b $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -v lon %tmp_fl_00%";
$dsc_sng="Retain degenerate dimensions (all variables)";
@@ -4531,7 +4474,6 @@ if(0){
#$tst_cmd[1]="ncks -C -H -s '%f' -v three_dmn_rec_var %tmp_fl_00%";
#$dsc_sng="Dimension reduction with min flag on type float variable";
#$tst_cmd[2]="1";
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y min -g g10 -v three_dmn_rec_var $in_pth_arg in_grp.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%f' -g g10 -v three_dmn_rec_var %tmp_fl_00%";
$dsc_sng="(Groups) Dimension reduction with min flag on type float variable";
@@ -4545,7 +4487,6 @@ if(0){
#same as #ncwa #27
# ncwa -h -O -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon in_grp_3.nc ~/foo.nc
# ncks -C -H --no_blank -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,3 ~/foo.nc
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon $in_pth_arg in_grp_3.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H --no_blank -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,3 %tmp_fl_00%");
@@ -4561,7 +4502,6 @@ if(0){
#same as #ncwa #28
# ncwa -h -O -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon in_grp_3.nc ~/foo.nc
# ncks -C -H -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,4 ~/foo.nc
-
# will fail SS - ncks not the last cmd
push(@tst_cmd, "ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y max -g g19g3 -v three_dmn_var_dbl -a lat,lon $in_pth_arg in_grp_3.nc %tmp_fl_00%");
push(@tst_cmd, "ncks -C -H -s '%f' -g g19g3 -v three_dmn_var_dbl -d time,4 %tmp_fl_00%");
@@ -4578,7 +4518,6 @@ if(0){
#same as #ncwa #33
# ncwa -h -O -y rms -w lat_wgt -g g20g1 -v lat_cpy in_grp_3.nc ~/foo.nc
# ncks -C -H -s '%f' -g g20g1 -v lat_cpy ~/foo.nc
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -y rms -w lat_wgt -g g20g1 -v lat_cpy $in_pth_arg in_grp_3.nc %tmp_fl_00% 2> %tmp_fl_02%";
$tst_cmd[1]="ncks -C -H -s '%f' -g g20g1 -v lat_cpy %tmp_fl_00%";;
$dsc_sng="(Groups) rms with weights";
@@ -4590,7 +4529,6 @@ if(0){
#ncwa #48
#NEW NCO 4.3.6
#ncwa -O -w gw_lat -d lat,1,2 -d lon,0,1 -a lat,lon -g g26 in_grp_3.nc ~/foo.nc
-
$tst_cmd[0]="ncwa $omp_flg -O $fl_fmt $nco_D_flg -w gw_lat -d lat,1,2 -d lon,0,1 -a lat,lon -g g26 $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -v a %tmp_fl_00%";;
$dsc_sng="(Groups) Weights and hyperslabs";
@@ -4603,7 +4541,6 @@ if(0){
# ncwa -h -O -v lev -a lev -w lev_wgt in_grp_3.nc ~/foo.nc
# lev = 230.769 lev_wgt=10,2,1; /g19/lev
# lev = 241.667 lev_wgt=9,2,1; /g8/lev
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -a lev -w lev_wgt $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g8 -v lev %tmp_fl_00%";
$dsc_sng="(Groups) Weights and groups (relative weight name test 1)";
@@ -4616,7 +4553,6 @@ if(0){
# ncwa -h -O -v lev -a lev -w lev_wgt in_grp_3.nc ~/foo.nc
# lev = 230.769 lev_wgt=10,2,1; /g19/lev
# lev = 241.667 lev_wgt=9,2,1; /g8/lev
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -a lev -w lev_wgt $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g19 -v lev %tmp_fl_00%";
$dsc_sng="(Groups) Weights and groups (relative weight name test 2)";
@@ -4629,7 +4565,6 @@ if(0){
#ncwa #51
# ncwa -h -O -a time -b -v time ~/nco/data/in_grp.nc ~/foo.nc
# ncks ~/foo.nc | grep 'time dimension 0'
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -a time -b -v time $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -H -v /g2/time %tmp_fl_00% | grep '=5.5'";
$dsc_sng="(Groups) retain degenerate record dimension";
@@ -4643,7 +4578,6 @@ if(0){
# ncwa -h -O -v lev -a lev -w /g8/lev_wgt in_grp_3.nc ~/foo.nc
# lev = 230.769 lev_wgt=10,2,1; /g19/lev
# lev = 241.667 lev_wgt=9,2,1; /g8/lev
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -a lev -w /g8/lev_wgt $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g8 -v lev %tmp_fl_00%";
$dsc_sng="(Groups) Weights and groups (absolute weight name -w /g8/lev_wgt test 1)";
@@ -4657,7 +4591,6 @@ if(0){
# ncwa -h -O -v lev -a lev -w /g19/lev_wgt in_grp_3.nc ~/foo.nc
# lev = 230.769 lev_wgt=10,2,1; /g19/lev
# lev = 241.667 lev_wgt=9,2,1; /g8/lev
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -a lev -w /g8/lev_wgt $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g19 -v lev %tmp_fl_00%";
$dsc_sng="(Groups) Weights and groups (absolute weight name -w /g19/lev_wgt test 2)";
@@ -4672,7 +4605,6 @@ if(0){
# ncwa -h -O -v lev -a /g8/lev -w /g8/lev_wgt in_grp_3.nc ~/foo.nc
# lev = 230.769 lev_wgt=10,2,1; /g19/lev
# lev = 241.667 lev_wgt=9,2,1; /g8/lev
-
$tst_cmd[0]="ncwa $omp_flg -h -O $fl_fmt $nco_D_flg -v lev -a /g8/lev -w /g8/lev_wgt $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -C -H -g g8 -v lev %tmp_fl_00%";
$dsc_sng="(Groups) Weights and groups (absolute dimension name -a /g8/lev)";
@@ -4696,11 +4628,10 @@ if(0){
#NEW 4.4.0
#ncwa #56
#ncwa -O -4 -a /time --cnk_dmn /time,1 -v time in.nc ~/foo.nc
-
$dsc_sng="Chunking -a /time --cnk_dmn /time,1 -v time";
$tst_cmd[0]="ncwa $omp_flg -O -4 $nco_D_flg -a /time --cnk_dmn /time,1 -v time $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m %tmp_fl_00% | grep 'time: type'";
- $tst_cmd[2]="time: type NC_DOUBLE, 0 dimensions, 5 attributes, chunked? no, compressed? no, packed? no";
+ $tst_cmd[2]="time: type NC_DOUBLE, 0 dimensions, 6 attributes, compressed? no, chunked? no, packed? no";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -4709,7 +4640,6 @@ if(0){
#ncwa #57
#ncwa -O -C -4 -D 1 --rdd -a lon,lat -v four_dmn_rec_var --cnk_plc=xpl --cnk_dmn lat,2 --cnk_dmn lon,4 ~/nco/data/in.nc ~/foo.nc
#ncks --hdn --cdl -v four_dmn_rec_var ~/foo.nc
-
$dsc_sng="Chunking with --rdd -a lon,lat -v four_dmn_rec_var --cnk_plc=xpl --cnk_dmn lat,2 --cnk_dmn lon,4 ";
$tst_cmd[0]="ncwa $omp_flg -O -C -4 $nco_D_flg --rdd -a lon,lat -v four_dmn_rec_var --cnk_plc=xpl --cnk_dmn lat,2 --cnk_dmn lon,4 $in_pth_arg in.nc %tmp_fl_00%";
$tst_cmd[1]="ncks --hdn --cdl -v four_dmn_rec_var %tmp_fl_00% | grep 'four_dmn_rec_var:_ChunkSizes'";
@@ -4722,7 +4652,6 @@ if(0){
#ncwa #58
#ncwa -O -y avg -a time301 -v time301 -C in_grp_3.nc ~/foo.nc
#ncks -m ~/foo.nc
-
$dsc_sng="Groups (Cell methods) (Create, average) -y avg -a time -v time";
$tst_cmd[0]="ncwa $omp_flg $nco_D_flg -O -y avg -a time301 -v time301 -C $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m %tmp_fl_00%";
@@ -4735,7 +4664,6 @@ if(0){
#ncwa #59
#ncwa -O -y max -a time301 -v time301 -C in_grp_3.nc ~/foo.nc
#ncks -m ~/foo.nc
-
$dsc_sng="Groups (Cell methods) (Create, maximum) -y max -a time -v time";
$tst_cmd[0]="ncwa $omp_flg $nco_D_flg -O -y max -a time301 -v time301 -C $in_pth_arg in_grp_3.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -m %tmp_fl_00%";
@@ -4748,25 +4676,23 @@ if(0){
#NEW 4.4.2
#ncwa #60 (part 1)
-#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
+#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
#ncks -m -C -v three_dmn_rec_var ~/foo.nc
-
$dsc_sng="Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon";
$tst_cmd[0]="ncwa $omp_flg $nco_D_flg --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -m -C -v three_dmn_rec_var %tmp_fl_00%";
- $tst_cmd[2]="three_dmn_rec_var attribute 2: cell_methods, size = 15 NC_CHAR, value = time, lon: mean";
+ $tst_cmd[1]="ncks -m -C -v three_dmn_rec_var %tmp_fl_00%";
+ $tst_cmd[2]="three_dmn_rec_var attribute 3: cell_methods, size = 15 NC_CHAR, value = time, lon: mean";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
#NEW 4.4.2
#ncwa #61 (part 2)
-#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
+#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
#ncks -m -C -v one_dmn_rec_var ~/foo.nc
-
$dsc_sng="Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon";
$tst_cmd[0]="ncwa $omp_flg $nco_D_flg --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -m -C -v one_dmn_rec_var %tmp_fl_00%";
+ $tst_cmd[1]="ncks -m -C -v one_dmn_rec_var %tmp_fl_00%";
$tst_cmd[2]="one_dmn_rec_var attribute 2: cell_methods, size = 10 NC_CHAR, value = time: mean";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
@@ -4774,13 +4700,12 @@ if(0){
#NEW 4.4.2
#ncwa #62 max
-#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
+#ncwa --op_typ=avg -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon in.nc ~/foo.nc
#ncks -m -C -v one_dmn_rec_var ~/foo.nc
-
$dsc_sng="Cell methods (Create, maximum) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon";
$tst_cmd[0]="ncwa $omp_flg $nco_D_flg --op_typ=max -O -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon $in_pth_arg in.nc %tmp_fl_00%";
- $tst_cmd[1]="ncks -m -C -v three_dmn_rec_var %tmp_fl_00%";
- $tst_cmd[2]="three_dmn_rec_var attribute 2: cell_methods, size = 18 NC_CHAR, value = time, lon: maximum";
+ $tst_cmd[1]="ncks -m -C -v three_dmn_rec_var %tmp_fl_00%";
+ $tst_cmd[2]="three_dmn_rec_var attribute 3: cell_methods, size = 18 NC_CHAR, value = time, lon: maximum";
$tst_cmd[3]="SS_OK";
NCO_bm::tst_run(\@tst_cmd);
$#tst_cmd=0; # Reset array
@@ -4894,7 +4819,7 @@ if(0){
#ncrename -O -a /g1/lon at units,new_units ~/nco/data/in_grp.nc ~/foo.nc
#ncks -v /g1/lon ~/foo.nc | grep 'new_units'
- $dsc_sng="Attributes: Absolute rename '/g1/lon\@units' to 'new_units'";
+ $dsc_sng="Attributes: Absolute rename '/g1/lon\@units' to 'new_units' (failure OK with netCDF < 4.3.3.1)";
$tst_cmd[0]="ncrename -O $fl_fmt $nco_D_flg -a '/g1/lon\@units,new_units' $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -g g1 %tmp_fl_00% | grep 'new_units'";
$tst_cmd[2]="lon attribute 0: new_units, size = 12 NC_CHAR, value = degrees_east";
@@ -4906,7 +4831,7 @@ if(0){
#ncrename -D 1 -O -a /g1/lon at units,/g1/lon at new_units ~/nco/data/in_grp.nc ~/foo.nc
#absolute rename /g1/lon at units att to /g1/lon at new_units
- $dsc_sng="Attributes: Absolute rename '/g1/lon\@units' to '/g1/lon\@new_units'";
+ $dsc_sng="Attributes: Absolute rename '/g1/lon\@units' to '/g1/lon\@new_units' (failure OK with netCDF < 4.3.3.1)";
$tst_cmd[0]="ncrename -O $fl_fmt $nco_D_flg -a '/g1/lon\@units,/g1/lon\@new_units' $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -g g1 %tmp_fl_00% | grep 'new_units'";
$tst_cmd[2]="lon attribute 0: new_units, size = 12 NC_CHAR, value = degrees_east";
@@ -4918,7 +4843,7 @@ if(0){
#ncrename -O -a /g1/lon at .units,new_units ~/nco/data/in_grp.nc ~/foo.nc
# optional absolute rename /g1/lon at .units att to new_units
- $dsc_sng="Attributes: Optional absolute rename '/g1/lon\@.units' to '/g1/lon\@new_units'";
+ $dsc_sng="Attributes: Optional absolute rename '/g1/lon\@.units' to '/g1/lon\@new_units' (failure OK with netCDF < 4.3.3.1)";
$tst_cmd[0]="ncrename -O $fl_fmt $nco_D_flg -a '/g1/lon\@.units,new_units' $in_pth_arg in_grp.nc %tmp_fl_00%";
$tst_cmd[1]="ncks -g g1 %tmp_fl_00% | grep 'new_units'";
$tst_cmd[2]="lon attribute 0: new_units, size = 12 NC_CHAR, value = degrees_east";
diff --git a/bm/cch_clr.pl b/bm/cch_clr.pl
index bdf6ea6..d70d9c1 100755
--- a/bm/cch_clr.pl
+++ b/bm/cch_clr.pl
@@ -1,6 +1,6 @@
#!/usr/bin/perl
-# $Header: /cvsroot/nco/nco/bm/cch_clr.pl,v 1.3 2006/05/27 21:48:33 zender Exp $
+# $Header$
# Purpose: Clear machine cache by loading memory with useless data
# Once cache is clear, benchmarking may proceed without risk that
diff --git a/bm/gcm_T85.cdl b/bm/gcm_T85.cdl
index f8b9a7c..c7787b8 100644
--- a/bm/gcm_T85.cdl
+++ b/bm/gcm_T85.cdl
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/bm/gcm_T85.cdl,v 1.1 2006/06/17 22:15:37 zender Exp $
+// $Header$
// ncgen -b -o ipcc_dly_T85.nc ipcc_dly_T85.cdl (-> 1,142,957,636 bytes)
// takes about 48 (real) sec on 900MHz/512MB a22p thinkpad,
// most of it waiting for disk
diff --git a/bm/mk_bm_plots.pl b/bm/mk_bm_plots.pl
index d7cae3f..2a3cff6 100644
--- a/bm/mk_bm_plots.pl
+++ b/bm/mk_bm_plots.pl
@@ -1,6 +1,6 @@
#!/usr/bin/perl
-# $Header: /cvsroot/nco/nco/bm/mk_bm_plots.pl,v 1.11 2006/05/23 22:24:07 zender Exp $
+# $Header$
# Script resides in nco/bm
# Purpose:
diff --git a/bm/nco_bm.pl b/bm/nco_bm.pl
index 7b85794..b75b801 100755
--- a/bm/nco_bm.pl
+++ b/bm/nco_bm.pl
@@ -2,7 +2,7 @@
# Shebang line above may have to be set explicitly to /usr/local/bin/perl
# on ESMF when running in queue. Otherwise it may pick up older perl
-# $Header: /cvsroot/nco/nco/bm/nco_bm.pl,v 1.155 2014/07/07 06:04:22 zender Exp $
+# $Header$
# Usage: bm_usg(), below, has more information
# ~/nco/bm/nco_bm.pl # Tests all operators
diff --git a/bm/nco_bm.sh b/bm/nco_bm.sh
index be06da6..1e102af 100755
--- a/bm/nco_bm.sh
+++ b/bm/nco_bm.sh
@@ -1,6 +1,6 @@
#!/bin/sh
-# $Header: /cvsroot/nco/nco/bm/nco_bm.sh,v 1.13 2006/08/29 17:50:28 zender Exp $ -*-shell-script-*-
+# $Header$ -*-shell-script-*-
# Purpose: Run NCO benchmark script in batch environment
diff --git a/bm/nco_bm_hyp.sh b/bm/nco_bm_hyp.sh
index 14ae280..be15a94 100755
--- a/bm/nco_bm_hyp.sh
+++ b/bm/nco_bm_hyp.sh
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/bm/nco_bm_hyp.sh,v 1.16 2006/06/12 20:02:11 zender Exp $
+# $Header$
# Purpose: Perform NCO benchmarks while subsetting
diff --git a/bm/nco_bm_md5wc_tbl.pl b/bm/nco_bm_md5wc_tbl.pl
index 448c146..05f8acf 100644
--- a/bm/nco_bm_md5wc_tbl.pl
+++ b/bm/nco_bm_md5wc_tbl.pl
@@ -1,6 +1,6 @@
# this file is valid perl code that populates the MD5_table for validating output files.
# Perl semantics must be maintained.
-# $Header: /cvsroot/nco/nco/bm/nco_bm_md5wc_tbl.pl,v 1.1 2005/09/16 19:16:03 mangalam Exp $
+# $Header$
# the md5 table needs to be populated with the md5 checksums for the output files
# generated with the no-history option.
diff --git a/bm/stl_5km.cdl b/bm/stl_5km.cdl
index 9b57454..05923d1 100644
--- a/bm/stl_5km.cdl
+++ b/bm/stl_5km.cdl
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/bm/stl_5km.cdl,v 1.3 2006/06/25 06:54:00 zender Exp $
+// $Header$
// Usage:
// ncgen -b -o sat_5km.nc sat_5km.cdl
diff --git a/config.h.in b/config.h.in
index 3e069af..d8b7afc 100644
--- a/config.h.in
+++ b/config.h.in
@@ -15,6 +15,9 @@
/* Debugging symbols: Produce symbols for debuggers (e.g., dbx, gdb) */
#undef ENABLE_DEBUG_SYMBOLS
+/* Compile operators with ESMF support */
+#undef ENABLE_ESMF
+
/* Compile operators with GSL support */
#undef ENABLE_GSL
@@ -90,6 +93,9 @@
/* Define to 1 if compiler finds external `erff' function */
#undef HAVE_ERFF
+/* Define to 1 if <ESMC.h> is present */
+#undef HAVE_ESMF_H
+
/* Define to 1 if compiler finds external `expf' function */
#undef HAVE_EXPF
@@ -138,12 +144,18 @@
/* Define to 1 if you have the `dl' library (-ldl). */
#undef HAVE_LIBDL
+/* Define to 1 if you have the `esmf' library (-lesmf). */
+#undef HAVE_LIBESMF
+
/* Define to 1 if you have the `expat' library (-lexpat). */
#undef HAVE_LIBEXPAT
/* Define to 1 if you have the `f95' library (-lf95). */
#undef HAVE_LIBF95
+/* Define to 1 if you have the `gfortran' library (-lgfortran). */
+#undef HAVE_LIBGFORTRAN
+
/* Define to 1 if you have the `gsl' library (-lgsl). */
#undef HAVE_LIBGSL
@@ -159,12 +171,21 @@
/* Define to 1 if you have the `netcdf' library (-lnetcdf). */
#undef HAVE_LIBNETCDF
+/* Define to 1 if you have the `netcdff' library (-lnetcdff). */
+#undef HAVE_LIBNETCDFF
+
+/* Define to 1 if you have the `netcdf_c++' library (-lnetcdf_c++). */
+#undef HAVE_LIBNETCDF_C__
+
/* Define to 1 if you have the `nsl' library (-lnsl). */
#undef HAVE_LIBNSL
/* Define to 1 if you have the `resolv' library (-lresolv). */
#undef HAVE_LIBRESOLV
+/* Define to 1 if you have the `rt' library (-lrt). */
+#undef HAVE_LIBRT
+
/* Define to 1 if you have the `socket' library (-lsocket). */
#undef HAVE_LIBSOCKET
diff --git a/configure b/configure
index d366b65..0fd4137 100755
--- a/configure
+++ b/configure
@@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for NCO netCDF Operators 4.4.8.
+# Generated by GNU Autoconf 2.69 for NCO netCDF Operators 4.5.0.
#
# Report bugs to <nco-bugs at lists.sourceforge.net>.
#
@@ -592,8 +592,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='NCO netCDF Operators'
PACKAGE_TARNAME='nco'
-PACKAGE_VERSION='4.4.8'
-PACKAGE_STRING='NCO netCDF Operators 4.4.8'
+PACKAGE_VERSION='4.5.0'
+PACKAGE_STRING='NCO netCDF Operators 4.5.0'
PACKAGE_BUGREPORT='nco-bugs at lists.sourceforge.net'
PACKAGE_URL=''
@@ -646,6 +646,10 @@ PATH_TO_NCGEN
UDUNITS2_PATH
ENABLE_GSL_FALSE
ENABLE_GSL_TRUE
+ENABLE_ESMF_FALSE
+ENABLE_ESMF_TRUE
+ESMF_LIB
+ESMF_INC
I18N_SHARE
ENABLE_MPI_FALSE
ENABLE_MPI_TRUE
@@ -816,6 +820,7 @@ enable_mpi
enable_fortran
enable_i18n
enable_nco_cplusplus
+enable_esmf
enable_gsl
enable_regex
enable_udunits
@@ -844,6 +849,8 @@ NETCDF_LIB
NETCDF_ROOT
ANTLR_ROOT
I18N_SHARE
+ESMF_INC
+ESMF_LIB
UDUNITS2_PATH'
@@ -1385,7 +1392,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
-\`configure' configures NCO netCDF Operators 4.4.8 to adapt to many kinds of systems.
+\`configure' configures NCO netCDF Operators 4.5.0 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@@ -1456,7 +1463,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
- short | recursive ) echo "Configuration of NCO netCDF Operators 4.4.8:";;
+ short | recursive ) echo "Configuration of NCO netCDF Operators 4.5.0:";;
esac
cat <<\_ACEOF
@@ -1497,6 +1504,7 @@ Optional Features:
--enable-i18n Internationalization (i18n) support (WARNING:
Experimental, for future use) [[default=no]]
--enable-nco_cplusplus Build NCO C++ interface library [[default=yes]]
+ --enable-esmf Build-in ESMF support if possible [[default=yes]]
--enable-gsl Build-in GSL support if possible [[default=yes]]
--enable-regex Allow extended regular expressions [[default=yes]]
--enable-udunits Build-in UDUnits support if possible [[default=no]]
@@ -1546,6 +1554,8 @@ Some influential environment variables:
ANTLR_ROOT Location of ANTLR version 2.7.x installation (compile-time)
I18N_SHARE Root of internationalization (i18n) locale directories
(run-time)
+ ESMF_INC Location of ESMF headers (compile-time)
+ ESMF_LIB Location of ESMF library (compile-time)
UDUNITS2_PATH
Root directory of UDUnits2 (normally contains bin, include, lib,
share subdirectories)
@@ -1616,7 +1626,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
-NCO netCDF Operators configure 4.4.8
+NCO netCDF Operators configure 4.5.0
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2482,7 +2492,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
-It was created by NCO netCDF Operators $as_me 4.4.8, which was
+It was created by NCO netCDF Operators $as_me 4.5.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@@ -3731,7 +3741,7 @@ fi
# Define the identity of the package.
PACKAGE='nco'
- VERSION='4.4.8'
+ VERSION='4.5.0'
cat >>confdefs.h <<_ACEOF
@@ -17593,47 +17603,6 @@ if test "x$ac_cv_file__opt_local_lib_libnetcdf_a" = xyes; then :
fi
-# Greenplanet
-# fxm: 20150107 this is an embarassing kludge that needs to be changed
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for /sopt/netcdf/netcdf411-gcc-serial/include/netcdf.h" >&5
-$as_echo_n "checking for /sopt/netcdf/netcdf411-gcc-serial/include/netcdf.h... " >&6; }
-if ${ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- test "$cross_compiling" = yes &&
- as_fn_error $? "cannot check for file existence when cross compiling" "$LINENO" 5
-if test -r "/sopt/netcdf/netcdf411-gcc-serial/include/netcdf.h"; then
- ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h=yes
-else
- ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h=no
-fi
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h" >&5
-$as_echo "$ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h" >&6; }
-if test "x$ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_include_netcdf_h" = xyes; then :
- CPPFLAGS="$CPPFLAGS -I/sopt/netcdf/netcdf411-gcc-serial/include"
-fi
-
-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for /sopt/netcdf/netcdf411-gcc-serial/lib/libnetcdf.a" >&5
-$as_echo_n "checking for /sopt/netcdf/netcdf411-gcc-serial/lib/libnetcdf.a... " >&6; }
-if ${ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- test "$cross_compiling" = yes &&
- as_fn_error $? "cannot check for file existence when cross compiling" "$LINENO" 5
-if test -r "/sopt/netcdf/netcdf411-gcc-serial/lib/libnetcdf.a"; then
- ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a=yes
-else
- ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a=no
-fi
-fi
-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a" >&5
-$as_echo "$ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a" >&6; }
-if test "x$ac_cv_file__sopt_netcdf_netcdf411_gcc_serial_lib_libnetcdf_a" = xyes; then :
- LDFLAGS="$LDFLAGS -L/sopt/netcdf/netcdf411-gcc-serial/lib -lnetcdf"
-fi
-
-
# Begin mandatory link test with libnetcdf.a
# Make precious variables for ./configure --help
@@ -19067,7 +19036,6 @@ if test "${enable_ncoxx}" != 'no'; then
# Add ${ANTLR_LIB}, if present, to library search path
LDFLAGS="${LDFLAGS} -L${ANTLR_LIB}"
fi
-#close {enable_ncoxx}
fi
# AC_CHECK_PROGS (variable, progs-to-check-for, [value-if-not-found], [path]
@@ -19286,6 +19254,367 @@ fi
# End nco_c++
echo "########################################"
+echo "# Testing for ESMF support #"
+echo "########################################"
+# Begin ESMF
+
+# Begin mandatory link test with libnetcdf.a
+# Make precious variables for ./configure --help
+
+
+
+# NB: Desirable for ESMF flags to precede netCDF flags so configure does not look in ESMF location for netCDF
+# Store pre-ESMF LIBS value to restore from later
+nco_LIBS_no_ESMF="${LIBS}"
+nco_CPPFLAGS_no_ESMF="${CPPFLAGS}"
+# Check whether --enable-esmf was given.
+if test "${enable_esmf+set}" = set; then :
+ enableval=$enable_esmf; enable_esmf=${enableval}
+else
+ enable_esmf=yes
+fi
+
+if test "${enable_esmf}" != 'yes'; then
+
+ enable_esmf='no'
+
+fi
+# Check for ESMF libraries unless told not to
+# Linking to ESMF library requires six more libraries to fully resolve on Linux:
+# -lesmf -lrt -lgfortran -ldl -lnetcdff -lnetcdf_c++
+if test "${enable_esmf}" != 'no'; then
+ if test "${ESMF_INC}"; then
+ CPPFLAGS="${CPPFLAGS} -I${ESMF_INC}"
+ else
+ ESMF_ROOT='/usr/local'
+ ESMF_INC="${ESMF_ROOT}/include"
+ ESMF_INC_ARG="-I${ESMF_INC}/include"
+ CPPFLAGS="${CPPFLAGS} ${ESMF_INC_ARG}"
+ fi
+ if test "${ESMF_LIB}"; then
+ LIBS="${LIBS} -L${ESMF_LIB}"
+ else
+ ESMF_ROOT='/usr/local'
+ ESMF_LIB="${ESMF_ROOT}/lib"
+ LIBS="${LIBS} -L${ESMF_LIB}"
+ fi
+# fxm: make non-fatal code path for when cannot find esmf-config
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lnetcdf_c++" >&5
+$as_echo_n "checking for main in -lnetcdf_c++... " >&6; }
+if ${ac_cv_lib_netcdf_cpp_main+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lnetcdf_c++ $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_netcdf_cpp_main=yes
+else
+ ac_cv_lib_netcdf_cpp_main=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_netcdf_cpp_main" >&5
+$as_echo "$ac_cv_lib_netcdf_cpp_main" >&6; }
+if test "x$ac_cv_lib_netcdf_cpp_main" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBNETCDF_C__ 1
+_ACEOF
+
+ LIBS="-lnetcdf_c++ $LIBS"
+
+fi
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lnetcdff" >&5
+$as_echo_n "checking for main in -lnetcdff... " >&6; }
+if ${ac_cv_lib_netcdff_main+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lnetcdff $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_netcdff_main=yes
+else
+ ac_cv_lib_netcdff_main=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_netcdff_main" >&5
+$as_echo "$ac_cv_lib_netcdff_main" >&6; }
+if test "x$ac_cv_lib_netcdff_main" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBNETCDFF 1
+_ACEOF
+
+ LIBS="-lnetcdff $LIBS"
+
+fi
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -ldl" >&5
+$as_echo_n "checking for main in -ldl... " >&6; }
+if ${ac_cv_lib_dl_main+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldl $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_dl_main=yes
+else
+ ac_cv_lib_dl_main=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_main" >&5
+$as_echo "$ac_cv_lib_dl_main" >&6; }
+if test "x$ac_cv_lib_dl_main" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBDL 1
+_ACEOF
+
+ LIBS="-ldl $LIBS"
+
+fi
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lgfortran" >&5
+$as_echo_n "checking for main in -lgfortran... " >&6; }
+if ${ac_cv_lib_gfortran_main+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lgfortran $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_gfortran_main=yes
+else
+ ac_cv_lib_gfortran_main=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_gfortran_main" >&5
+$as_echo "$ac_cv_lib_gfortran_main" >&6; }
+if test "x$ac_cv_lib_gfortran_main" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBGFORTRAN 1
+_ACEOF
+
+ LIBS="-lgfortran $LIBS"
+
+fi
+
+# librt.a: Real-time library
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lrt" >&5
+$as_echo_n "checking for main in -lrt... " >&6; }
+if ${ac_cv_lib_rt_main+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lrt $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_rt_main=yes
+else
+ ac_cv_lib_rt_main=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_rt_main" >&5
+$as_echo "$ac_cv_lib_rt_main" >&6; }
+if test "x$ac_cv_lib_rt_main" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBRT 1
+_ACEOF
+
+ LIBS="-lrt $LIBS"
+
+fi
+
+# Most elegant formulation:
+# AC_CHECK_FUNC([clock_gettime])
+# if test $ac_cv_func_clock_gettime = no; then
+# AC_CHECK_LIB(rt, clock_gettime,,
+# [AC_MSG_ERROR([librt required but not found])])
+# fi
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ESMC_Initialize in -lesmf" >&5
+$as_echo_n "checking for ESMC_Initialize in -lesmf... " >&6; }
+if ${ac_cv_lib_esmf_ESMC_Initialize+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lesmf $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char ESMC_Initialize ();
+int
+main ()
+{
+return ESMC_Initialize ();
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+ ac_cv_lib_esmf_ESMC_Initialize=yes
+else
+ ac_cv_lib_esmf_ESMC_Initialize=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_esmf_ESMC_Initialize" >&5
+$as_echo "$ac_cv_lib_esmf_ESMC_Initialize" >&6; }
+if test "x$ac_cv_lib_esmf_ESMC_Initialize" = xyes; then :
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBESMF 1
+_ACEOF
+
+ LIBS="-lesmf $LIBS"
+
+else
+ enable_esmf=no
+fi
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: These ESMF library and header tests must succeed for ESMF support:" >&5
+$as_echo "$as_me: These ESMF library and header tests must succeed for ESMF support:" >&6;}
+ if test "${ESMF_ROOT}"; then
+ as_ac_File=`$as_echo "ac_cv_file_${ESMF_INC}/ESMC.h" | $as_tr_sh`
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for ${ESMF_INC}/ESMC.h" >&5
+$as_echo_n "checking for ${ESMF_INC}/ESMC.h... " >&6; }
+if eval \${$as_ac_File+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ test "$cross_compiling" = yes &&
+ as_fn_error $? "cannot check for file existence when cross compiling" "$LINENO" 5
+if test -r "${ESMF_INC}/ESMC.h"; then
+ eval "$as_ac_File=yes"
+else
+ eval "$as_ac_File=no"
+fi
+fi
+eval ac_res=\$$as_ac_File
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+if eval test \"x\$"$as_ac_File"\" = x"yes"; then :
+
+$as_echo "#define HAVE_ESMF_H 1" >>confdefs.h
+
+else
+ enable_esmf=no
+fi
+
+ else
+ ac_fn_c_check_header_mongrel "$LINENO" "ESMC.h" "ac_cv_header_ESMC_h" "$ac_includes_default"
+if test "x$ac_cv_header_ESMC_h" = xyes; then :
+
+$as_echo "#define HAVE_ESMF_H 1" >>confdefs.h
+
+else
+ enable_esmf=no
+fi
+
+
+ fi
+ if test "${enable_esmf}" = 'no'; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: ESMF support disabled (missing/unusable library or header file)" >&5
+$as_echo "$as_me: WARNING: ESMF support disabled (missing/unusable library or header file)" >&2;}
+ LIBS="${nco_LIBS_no_ESMF}"
+ CPPFLAGS="${nco_CPPFLAGS_no_ESMF}"
+ elif test "${enable_esmf}" = 'yes'; then
+
+$as_echo "#define ENABLE_ESMF 1" >>confdefs.h
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: ESMF support enabled" >&5
+$as_echo "$as_me: ESMF support enabled" >&6;}
+ fi
+fi
+ if test "${enable_esmf}" = 'yes'; then
+ ENABLE_ESMF_TRUE=
+ ENABLE_ESMF_FALSE='#'
+else
+ ENABLE_ESMF_TRUE='#'
+ ENABLE_ESMF_FALSE=
+fi
+
+#echo "DEBUG: After ESMF tests LIBS = ${LIBS}"
+# This would activate conditional ESMF tests, if there were any
+# AM_CONDITIONAL(TEST_ESMF,[test "${enable_esmf}" = 'yes'])
+# End ESMF
+
+echo "########################################"
echo "# Testing for GSL support #"
echo "########################################"
# Begin GSL
@@ -19986,7 +20315,7 @@ if test "x${GCC_OR_GXX}" = 'xyes' ; then
# -fno-common: Prevent global variables from being simultaneously defined in different files
# -g: Put debugging symbols in executable
# -pg: Enable profiling, generate gmon.out output files (also needed by linker)
-# -O3: Clang -O4 is is equivalent to -O3
+# -O3: clang -O4 DNE, highest clang optimization is -O3
# -O4: Turn on optimization so uninitialized variables are flagged
# Compilation flags recommended by GSL that I do not like and do not use:
# -ansi: Support only strict ANSI C. Equivalent to -std=c89, conflicts with -std=c99
@@ -20391,7 +20720,7 @@ if test $ac_compiler_gnu = 'yes'; then
CFLAGS="${CFLAGS} -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE"
case ${host} in
# MacOSX does not understand shared libraries
-# Clang -O4 DNE. Highest is -O3. CEWI.
+# clang -O4 DNE, highest clang optimization is -O3
*-apple-darwin* ) CFLAGS=`echo "${CFLAGS}" | sed -e 's/-D_POSIX_SOURCE//'` ; CFLAGS=`echo "${CFLAGS}" | sed -e 's/-O4/-O3/'` ; CFLAGS="-fno-common ${CFLAGS}" ; enable_shared='no' ;;
# Solaris has problems with time.h
sparc-sun-solaris2* ) CFLAGS=`echo "${CFLAGS}" | sed -e 's/-D_POSIX_SOURCE//'` ; ;;
@@ -20679,6 +21008,10 @@ if test -z "${ENABLE_MPI_TRUE}" && test -z "${ENABLE_MPI_FALSE}"; then
as_fn_error $? "conditional \"ENABLE_MPI\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
fi
+if test -z "${ENABLE_ESMF_TRUE}" && test -z "${ENABLE_ESMF_FALSE}"; then
+ as_fn_error $? "conditional \"ENABLE_ESMF\" was never defined.
+Usually this means the macro was only invoked conditionally." "$LINENO" 5
+fi
if test -z "${ENABLE_GSL_TRUE}" && test -z "${ENABLE_GSL_FALSE}"; then
as_fn_error $? "conditional \"ENABLE_GSL\" was never defined.
Usually this means the macro was only invoked conditionally." "$LINENO" 5
@@ -21080,7 +21413,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
-This file was extended by NCO netCDF Operators $as_me 4.4.8, which was
+This file was extended by NCO netCDF Operators $as_me 4.5.0, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@@ -21146,7 +21479,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
-NCO netCDF Operators config.status 4.4.8
+NCO netCDF Operators config.status 4.5.0
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"
@@ -23196,6 +23529,7 @@ echo "CPPFLAGS............. ${CPPFLAGS}"
echo "CXX.................. ${CXX}"
echo "CXXFLAGS............. ${CXXFLAGS}"
echo "ENABLE_DAP........... ${enable_dap}"
+echo "ENABLE_ESMF...........${enable_esmf}"
echo "ENABLE_GSL........... ${enable_gsl}"
echo "ENABLE_NETCDF4....... ${enable_netcdf4}"
echo "ENABLE_UDUNITS....... ${enable_udunits}"
diff --git a/configure.ac b/configure.ac
index d4b0cc7..ea2bd98 100644
--- a/configure.ac
+++ b/configure.ac
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/configure.ac,v 1.60 2015/02/05 19:26:54 zender Exp $ -*-Shell-script-*-
+# $Header$ -*-Shell-script-*-
# Purpose: Template autoconf uses to generate NCO configure script
# Newer convention names this file configure.ac, rather than configure.in
@@ -51,7 +51,7 @@
# Process configure input with autoconf to produce configure script
# (package name,version,bug-report-address,tarball name)
-AC_INIT([NCO netCDF Operators],[4.4.8],[nco-bugs at lists.sourceforge.net],[nco])
+AC_INIT([NCO netCDF Operators],[4.5.0],[nco-bugs at lists.sourceforge.net],[nco])
# Print GNU copyright in configure script
AC_COPYRIGHT
@@ -227,11 +227,6 @@ echo "################################"
AC_CHECK_FILE([/opt/local/include/netcdf.h], [CPPFLAGS="$CPPFLAGS -I/opt/local/include"], [])
AC_CHECK_FILE([/opt/local/lib/libnetcdf.a], [LDFLAGS="$LDFLAGS -L/opt/local/lib -lnetcdf"], [])
-# Greenplanet
-# fxm: 20150107 this is an embarassing kludge that needs to be changed
-AC_CHECK_FILE([/sopt/netcdf/netcdf411-gcc-serial/include/netcdf.h], [CPPFLAGS="$CPPFLAGS -I/sopt/netcdf/netcdf411-gcc-serial/include"], [])
-AC_CHECK_FILE([/sopt/netcdf/netcdf411-gcc-serial/lib/libnetcdf.a], [LDFLAGS="$LDFLAGS -L/sopt/netcdf/netcdf411-gcc-serial/lib -lnetcdf"], [])
-
# Begin mandatory link test with libnetcdf.a
# Make precious variables for ./configure --help
AC_ARG_VAR(NETCDF_INC,Location of netCDF headers (compile-time))
@@ -432,7 +427,6 @@ if test "${enable_ncoxx}" != 'no'; then
# Add ${ANTLR_LIB}, if present, to library search path
LDFLAGS="${LDFLAGS} -L${ANTLR_LIB}"
fi
-#close {enable_ncoxx}
fi
# AC_CHECK_PROGS (variable, progs-to-check-for, [value-if-not-found], [path]
@@ -523,6 +517,80 @@ AC_ARG_ENABLE(nco_cplusplus,AS_HELP_STRING([--enable-nco_cplusplus],[Build NCO C
# End nco_c++
echo "########################################"
+echo "# Testing for ESMF support #"
+echo "########################################"
+# Begin ESMF
+
+# Begin mandatory link test with libnetcdf.a
+# Make precious variables for ./configure --help
+AC_ARG_VAR(ESMF_INC,Location of ESMF headers (compile-time))
+AC_ARG_VAR(ESMF_LIB,Location of ESMF library (compile-time))
+
+# NB: Desirable for ESMF flags to precede netCDF flags so configure does not look in ESMF location for netCDF
+# Store pre-ESMF LIBS value to restore from later
+nco_LIBS_no_ESMF="${LIBS}"
+nco_CPPFLAGS_no_ESMF="${CPPFLAGS}"
+AC_ARG_ENABLE(esmf,AS_HELP_STRING([--enable-esmf],[Build-in ESMF support if possible [[default=yes]]]),enable_esmf=${enableval},enable_esmf=yes)
+if test "${enable_esmf}" != 'yes'; then
+
+ enable_esmf='no'
+
+fi
+# Check for ESMF libraries unless told not to
+# Linking to ESMF library requires six more libraries to fully resolve on Linux:
+# -lesmf -lrt -lgfortran -ldl -lnetcdff -lnetcdf_c++
+if test "${enable_esmf}" != 'no'; then
+ if test "${ESMF_INC}"; then
+ CPPFLAGS="${CPPFLAGS} -I${ESMF_INC}"
+ else
+ ESMF_ROOT='/usr/local'
+ ESMF_INC="${ESMF_ROOT}/include"
+ ESMF_INC_ARG="-I${ESMF_INC}/include"
+ CPPFLAGS="${CPPFLAGS} ${ESMF_INC_ARG}"
+ fi
+ if test "${ESMF_LIB}"; then
+ LIBS="${LIBS} -L${ESMF_LIB}"
+ else
+ ESMF_ROOT='/usr/local'
+ ESMF_LIB="${ESMF_ROOT}/lib"
+ LIBS="${LIBS} -L${ESMF_LIB}"
+ fi
+# fxm: make non-fatal code path for when cannot find esmf-config
+ AC_CHECK_LIB([netcdf_c++],[main])
+ AC_CHECK_LIB([netcdff],[main])
+ AC_CHECK_LIB([dl],[main])
+ AC_CHECK_LIB([gfortran],[main])
+# librt.a: Real-time library
+ AC_CHECK_LIB([rt],[main])
+# Most elegant formulation:
+# AC_CHECK_FUNC([clock_gettime])
+# if test $ac_cv_func_clock_gettime = no; then
+# AC_CHECK_LIB(rt, clock_gettime,,
+# [AC_MSG_ERROR([librt required but not found])])
+# fi
+ AC_CHECK_LIB([esmf],[ESMC_Initialize],,enable_esmf=no)
+ AC_MSG_NOTICE([These ESMF library and header tests must succeed for ESMF support:])
+ if test "${ESMF_ROOT}"; then
+ AC_CHECK_FILE([${ESMF_INC}/ESMC.h],AC_DEFINE([HAVE_ESMF_H],1,[Define to 1 if <ESMC.h> is present]),enable_esmf=no)
+ else
+ AC_CHECK_HEADER([ESMC.h],AC_DEFINE([HAVE_ESMF_H],1,[Define to 1 if <ESMC.h> is present]),enable_esmf=no)
+ fi
+ if test "${enable_esmf}" = 'no'; then
+ AC_MSG_WARN([ESMF support disabled (missing/unusable library or header file)])
+ LIBS="${nco_LIBS_no_ESMF}"
+ CPPFLAGS="${nco_CPPFLAGS_no_ESMF}"
+ elif test "${enable_esmf}" = 'yes'; then
+ AC_DEFINE(ENABLE_ESMF,1,Compile operators with ESMF support)
+ AC_MSG_NOTICE([ESMF support enabled])
+ fi
+fi
+AM_CONDITIONAL(ENABLE_ESMF,[test "${enable_esmf}" = 'yes'])
+#echo "DEBUG: After ESMF tests LIBS = ${LIBS}"
+# This would activate conditional ESMF tests, if there were any
+# AM_CONDITIONAL(TEST_ESMF,[test "${enable_esmf}" = 'yes'])
+# End ESMF
+
+echo "########################################"
echo "# Testing for GSL support #"
echo "########################################"
# Begin GSL
@@ -1158,6 +1226,7 @@ echo "CPPFLAGS............. ${CPPFLAGS}"
echo "CXX.................. ${CXX}"
echo "CXXFLAGS............. ${CXXFLAGS}"
echo "ENABLE_DAP........... ${enable_dap}"
+echo "ENABLE_ESMF...........${enable_esmf}"
echo "ENABLE_GSL........... ${enable_gsl}"
echo "ENABLE_NETCDF4....... ${enable_netcdf4}"
echo "ENABLE_UDUNITS....... ${enable_udunits}"
diff --git a/configure.eg b/configure.eg
index 95644cb..cef9655 100644
--- a/configure.eg
+++ b/configure.eg
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/configure.eg,v 1.171 2015/01/17 00:53:13 zender Exp $ -*-Fundamental-*-
+$Header$ -*-Fundamental-*-
Purpose(s):
Track status of autobuild features for NCO
@@ -257,6 +257,30 @@ make check >> nco.make.${GNU_TRP}.foo 2>&1
make install >> nco.make.${GNU_TRP}.foo 2>&1
scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
+# icc/icpc Zender uses this to develop/install/update netCDF4-enabled NCO in personal directories on rhea:
+export GNU_TRP=`~/nco/autobld/config.guess`
+# Commands used for Makefile builds
+module avail
+. ~/.bashrc
+# module add intel gsl netcdf # No! netcdf/hdf from modules causes unresolved linker error
+module add intel gsl
+export LD_LIBRARY_PATH='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3/lib:/sw/redhat6/szip/2.1/rhel6.6_gnu4.8.2/lib':${LD_LIBRARY_PATH}
+export NETCDF_ROOT='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3'
+cd ~/nco/bld;make ANTLR_ROOT=${HOME} NETCDF_ROOT='/sw/redhat6/netcdf/4.1.3/rhel6.4_intel13.1.3' SZ=Y SZ_LIB='/sw/redhat6/szip/2.1/rhel6.6_gnu4.8.2/lib' UDUNITS_INC='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/include' UDUNITS_LIB='/sw/redhat6/udunits/2.1.24/rhel6.4_intel13.1.3/lib' OPTS=D allinone;cd -
+
+# Commands used for Configure builds
+module add intel gsl netcdf
+export LDFLAGS="${NETCDF_CLIB} ${GSL_LIB} ${SZIP_POST_LINK_OPTS}"
+export CPPFLAGS="-I${NETCDF_DIR}/include ${GSL_INCLUDE_OPTS} ${SZIP_INCLUDE_OPTS}"
+cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
+CC='icc' CXX='icpc' ./configure --disable-shared --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
+/bin/cp -f config.log nco.config.log.${GNU_TRP}.foo
+/bin/cp -f libtool nco.libtool.${GNU_TRP}.foo
+make clean;make > nco.make.${GNU_TRP}.foo 2>&1
+make check >> nco.make.${GNU_TRP}.foo 2>&1
+make install >> nco.make.${GNU_TRP}.foo 2>&1
+scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
+
# gcc/g++ Sysadmins: use this to install/update NCO in /opt/nco
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
@@ -413,7 +437,8 @@ LINUXAMD64
Linux sand.ess.uci.edu 2.6.8.1-4-amd64-generic #1 Thu Dec 16 11:44:05 UTC 2004 x86_64 GNU/Linux
x86_64-unknown-linux-gnu
-# gcc/g++ Regular (non-root) users build NCO with system-supplied netCDF3 and install in your own directories:
+# gcc/g++ Regular (non-root) users build NCO with system-supplied netCDF and install in your own directories
+# Zender uses this on MACOSX aerosol as well
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
@@ -435,7 +460,7 @@ make check >> nco.make.${GNU_TRP}.foo 2>&1
sudo make install >> nco.make.${GNU_TRP}.foo 2>&1
scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
-# gcc/g++ Zender uses this to test building NCO with pre-built Ubuntu netCDF
+# gcc/g++ Zender uses this to test building NCO with pre-built (i.e., yum install'd or aptitude install'd) netCDF
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' ./configure --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
@@ -446,7 +471,18 @@ make check >> nco.make.${GNU_TRP}.foo 2>&1
make install >> nco.make.${GNU_TRP}.foo 2>&1
scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
-# gcc/g++ Zender uses this debug NCO with pre-built netCDF binaries in /usr
+# gcc/g++ Zender uses this to debug NCO with custom-install netCDF (and ESMF) binaries in /usr/local
+export GNU_TRP=`~/nco/autobld/config.guess`
+cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
+CC='gcc' CXX='g++' NETCDF_INC='/usr/local/include' NETCDF_LIB='/usr/local/lib' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
+/bin/cp -f config.log nco.config.log.${GNU_TRP}.foo
+/bin/cp -f libtool nco.libtool.${GNU_TRP}.foo
+make clean;make > nco.make.${GNU_TRP}.foo 2>&1
+make check >> nco.make.${GNU_TRP}.foo 2>&1
+make install >> nco.make.${GNU_TRP}.foo 2>&1
+scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
+
+# gcc/g++ Zender uses this to debug NCO with pre-built netCDF binaries in /usr (this works on MACOSX with MacPorts, e.g., aerosol)
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
@@ -457,6 +493,18 @@ make check >> nco.make.${GNU_TRP}.foo 2>&1
make install >> nco.make.${GNU_TRP}.foo 2>&1
scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
+# gcc/g++ Zender uses this to debug NCO with pre-built netCDF (and ESMF) binaries in /opt/local (this works on MACOSX with MacPorts, e.g., aerosol)
+export GNU_TRP=`~/nco/autobld/config.guess`
+cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
+CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' ESMF_INC='/opt/local/include' ESMF_LIB='/opt/local/lib/gcc49' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
+CC='gcc' CFLAGS='' CXX='g++' CXXFLAGS='' ESMF_INC='/opt/local/include' ESMF_LIB='/opt/local/lib' ./configure --enable-debug-custom --prefix=${HOME} --bindir=${MY_BIN_DIR} --datadir=${HOME}/nco/data --libdir=${MY_LIB_DIR} --mandir=${HOME}/nco/man > nco.configure.${GNU_TRP}.foo 2>&1
+/bin/cp -f config.log nco.config.log.${GNU_TRP}.foo
+/bin/cp -f libtool nco.libtool.${GNU_TRP}.foo
+make clean;make > nco.make.${GNU_TRP}.foo 2>&1
+make check >> nco.make.${GNU_TRP}.foo 2>&1
+make install >> nco.make.${GNU_TRP}.foo 2>&1
+scp nco.configure.${GNU_TRP}.foo nco.config.log.${GNU_TRP}.foo nco.libtool.${GNU_TRP}.foo nco.make.${GNU_TRP}.foo dust.ess.uci.edu:/var/www/html/nco/rgr
+
# g++/g++ Zender uses this to compile NCO with _g++_ (not recommended for normal use)
export GNU_TRP=`~/nco/autobld/config.guess`
cd ~/nco;/bin/rm -f *.${GNU_TRP}.foo;make distclean
diff --git a/data/.gitignore b/data/.gitignore
new file mode 100644
index 0000000..7cb834e
--- /dev/null
+++ b/data/.gitignore
@@ -0,0 +1,4 @@
+# Git-ignore patterns for ~/nco/data
+/Makefile
+/%tmp_fl_*
+/nco_bm.stderr
diff --git a/data/Makefile.am b/data/Makefile.am
index 232787b..de5a063 100644
--- a/data/Makefile.am
+++ b/data/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/data/Makefile.am,v 1.44 2015/01/20 18:44:52 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
test_data = big.nc in.nc in_rec_zero.nc
diff --git a/data/Makefile.in b/data/Makefile.in
index 632dd19..e0af41c 100644
--- a/data/Makefile.in
+++ b/data/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/data/Makefile.in,v 1.122 2015/01/20 18:44:52 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
@@ -144,6 +144,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/data/bin_cnt.nco b/data/bin_cnt.nco
index 15448ac..8f9fae5 100644
--- a/data/bin_cnt.nco
+++ b/data/bin_cnt.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/bin_cnt.nco,v 1.13 2009/05/22 17:22:41 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Compute wind speed PDFs from annual input files
diff --git a/data/cf2.cdl b/data/cf2.cdl
new file mode 100644
index 0000000..e94669c
--- /dev/null
+++ b/data/cf2.cdl
@@ -0,0 +1,25 @@
+netcdf cf2 {
+ // ncgen -k netCDF-4 -b -o ~/nco/data/cf2.nc ~/nco/data/cf2.cdl
+ dimensions:
+ lat=3;
+
+ group: g1 {
+ dimensions:
+ lat=2;
+ variables:
+ float g1v1;
+ g1v1:coordinates="/lat";
+ data:
+ g1v1=273.0;
+ } // /g1
+
+ group: g2 {
+ dimensions:
+ lat=2;
+ variables:
+ double lat(lat);
+ data:
+ lat=-90,90;
+ } // /g2
+
+} // end root group
diff --git a/data/ddra.nco b/data/ddra.nco
index 84d64db..d1cc4af 100644
--- a/data/ddra.nco
+++ b/data/ddra.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/ddra.nco,v 1.10 2007/06/18 21:03:22 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Compute DDRA statistics for use in ppr_ZeM06
// Demonstrate ncap2 scripting
diff --git a/data/gsl_sf.in b/data/gsl_sf.in
index 4a4e10a..b46273a 100644
--- a/data/gsl_sf.in
+++ b/data/gsl_sf.in
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/gsl_sf.in,v 1.9 2010/01/14 14:12:53 hmb Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Script to test gsl special functions
diff --git a/data/hdf.cdl b/data/hdf.cdl
index 2728d81..00c656a 100644
--- a/data/hdf.cdl
+++ b/data/hdf.cdl
@@ -57,7 +57,7 @@ variables:
:Conventions = "CF-1.0";
:history = "History global attribute.\nAttributes like this often have embedded newlines to enhance legibility.\nSuch newlines should serve as linebreaks on the screen, hence,\nfriendly CDL converters print a single NC_CHAR attribute as a comma-separated list of strings\nwhere each embedded delimiter marks a linebreak.\nOtherwise it would be harder for humans to read the CDL.";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/hdf.cdl,v 1.4 2013/12/23 06:22:19 zender Exp $";
+ :RCS_Header = "$Header$";
int date_int(date_dmn);
date_int:long_name = "Date (as array of ints: YYYY,MM,DD,HH,MM)";
diff --git a/data/in.cdl b/data/in.cdl
index 63dea4c..6bd774b 100644
--- a/data/in.cdl
+++ b/data/in.cdl
@@ -68,7 +68,7 @@ variables:
:Conventions = "CF-1.0";
:history = "History global attribute.\nAttributes like this often have embedded newlines to enhance legibility.\nSuch newlines should serve as linebreaks on the screen, hence,\nfriendly CDL converters print a single NC_CHAR attribute as a comma-separated list of strings\nwhere each embedded delimiter marks a linebreak.\nOtherwise it would be harder for humans to read the CDL.";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in.cdl,v 1.212 2015/02/09 18:04:43 zender Exp $";
+ :RCS_Header = "$Header$";
int date_int(date_dmn);
date_int:long_name = "Date (as array of ints: YYYY,MM,DD,HH,MM)";
@@ -189,10 +189,14 @@ variables:
time:units = "days since 1964-03-12 12:09:00 -9:00";
time:calendar = "gregorian";
time:bounds = "time_bnds";
+ time:climatology = "climatology_bounds";
float time_bnds(time,vrt_nbr);
time_bnds:purpose = "Cell boundaries for time coordinate";
+ float climatology_bounds(time,vrt_nbr);
+ climatology_bounds:purpose = "Variable containing CF-compliant climatology bounds for time dimension";
+
double lon_cal(lon_cal);
lon_cal:long_name = "lon_cal";
lon_cal:units = "days since 1964-2-28";
@@ -847,8 +851,12 @@ variables:
int one_dmn_rec_var(time);
one_dmn_rec_var:long_name = "one dimensional record variable";
+ one_dmn_rec_var:coordinates = "time";
one_dmn_rec_var:units = "kelvin";
-
+
+ double one_dmn_rec_wgt(time);
+ one_dmn_rec_wgt:long_name = "one dimensional record variable weight";
+
int one_dmn_rec_var_mdn(time);
one_dmn_rec_var_mdn:long_name = "one dimensional record variable to test median";
@@ -1051,6 +1059,7 @@ variables:
float three_dmn_rec_var(time,lat,lon);
three_dmn_rec_var:long_name = "three dimensional record variable";
three_dmn_rec_var:units = "watt meter-2";
+ three_dmn_rec_var:coordinates = "time lat lon";
double three_dmn_var_dbl(time,lat,lon);
three_dmn_var_dbl:long_name = "three dimensional record variable of type double";
@@ -1285,6 +1294,7 @@ data:
non_nul_trm_char_two_dmn="abcd","efgh","ijkm";
one=1.;
one_dmn_rec_var=1,2,3,4,5,6,7,8,9,10;
+ one_dmn_rec_wgt=2,1,0,0,0,0,0,0,0,0;
one_dmn_rec_var_unsorted=10,4,6,2,8,1,9,7,3,5;
one_dmn_rec_var_flt=1,2,3,4,5,6,7,8,9,10;
one_dmn_rec_var_flt_mss=_,2,3,4,5,6,7,8,9,_;
@@ -1454,6 +1464,7 @@ data:
three_dmn_var_crd=0.,1.,2.,3.,12.,13.,14.,15.,4.,5.,6.,7.,16.,17.,18.,19.,8.,9.,10.,11.,20.,21.,22.,23.;
time=1.,2.,3.,4.,5.,6.,7.,8.,9.,10.;
time_bnds=0.5,1.5,1.5,2.5,2.5,3.5,3.5,4.5,4.5,5.5,5.5,6.5,6.5,7.5,7.5,8.5,8.5,9.5,9.5,10.5;
+ climatology_bounds=0.5,1.5,1.5,2.5,2.5,3.5,3.5,4.5,4.5,5.5,5.5,6.5,6.5,7.5,7.5,8.5,8.5,9.5,9.5,10.5;
tm_std=59;
tm_grg=59;
tm_jln=59;
diff --git a/data/in_4.cdl b/data/in_4.cdl
index 9f5daa8..d76618f 100644
--- a/data/in_4.cdl
+++ b/data/in_4.cdl
@@ -60,7 +60,7 @@ variables:
:Conventions = "CF-1.0";
:history = "History global attribute.\nAttributes like this often have embedded newlines to enhance legibility.\nSuch newlines should serve as linebreaks on the screen, hence,\nfriendly CDL converters print a single NC_CHAR attribute as a comma-separated list of strings\nwhere each embedded delimiter marks a linebreak.\nOtherwise it would be harder for humans to read the CDL.";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_4.cdl,v 1.23 2013/11/24 23:05:44 zender Exp $";
+ :RCS_Header = "$Header$";
string :sng_att = "Test global string attribute"; // 20130723 This is how to specify global string attributes
// netCDF4-only atomic types
diff --git a/data/in_grp.cdl b/data/in_grp.cdl
index 92a80d1..b504d93 100644
--- a/data/in_grp.cdl
+++ b/data/in_grp.cdl
@@ -82,6 +82,10 @@ netcdf in_grp {
float one;
+ float val_one_mss(lat);
+ val_one_mss:long_name = "one regular value, one missing value";
+ val_one_mss:_FillValue = 1.0e36f;
+
float scl;
integer unique;
@@ -93,7 +97,7 @@ netcdf in_grp {
:Conventions = "CF-1.0";
:history = "History global attribute.\n";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_grp.cdl,v 1.125 2015/02/03 04:43:45 zender Exp $";
+ :RCS_Header = "$Header$";
data:
ppc_dbl=0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0.123456789;
@@ -109,10 +113,8 @@ netcdf in_grp {
scl=1.0;
time=1.,2.,3.,4.,5.,6.,7.,8.,9.,10.;
unique=73;
+ val_one_mss=1.,1.0e36;
- //
- //g1
- //
group: g1 {
:history = "History group attribute.\n";
variables:
@@ -180,9 +182,6 @@ netcdf in_grp {
} // end g1:g2
} // end g1
- //
- //g2
- //
group: g2 {
variables:
//coordinate variable (dimension at root)
@@ -195,9 +194,6 @@ netcdf in_grp {
scl=1.2;
} // end g2
- //
- //g4
- //
group: g4 {
variables:
double ppc_dbl(time);
@@ -226,9 +222,6 @@ netcdf in_grp {
one_dmn_rec_var=1,2,3,4,5,6,7,8,9,10;
} // end g4
- //
- //g5
- //
group: g5 {
dimensions:
time51=unlimited; //test --rec_apn with more than 1 record in group (NB: make first record, time51, differ from variable size (time52) )
@@ -245,9 +238,6 @@ netcdf in_grp {
time52=1.,2.,3.,4.,5.,6.,7.,8.,9.,10.;
} // end g5
- //
- //g6
- //
group: g6 { // Level 1
variables:
float area(lat);
@@ -263,9 +253,6 @@ netcdf in_grp {
} //end g6g1
} // end g6
- //
- //g7
- //
group: g7 {
variables:
@@ -324,9 +311,6 @@ netcdf in_grp {
} //g7g1
} // end g7
- //
- //g8
- //
group: g8 { // Level 1
group: g8g1 { // Level 2
group: g8g1g1 { // Level 3
@@ -338,9 +322,6 @@ netcdf in_grp {
} // end g8g1
} // end g8
- //
- //g9
- //
group: g9 { // Level 1
group: g9g1 { // Level 2
variables:
diff --git a/data/in_nomismatch.cdl b/data/in_nomismatch.cdl
index c609bf2..1bc2881 100644
--- a/data/in_nomismatch.cdl
+++ b/data/in_nomismatch.cdl
@@ -70,7 +70,7 @@ variables:
:Conventions = "CF-1.0";
:history = "History global attribute.\n";
:julian_day = 200000.04;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_nomismatch.cdl,v 1.5 2011/11/12 19:02:48 zender Exp $";
+ :RCS_Header = "$Header$";
float lat(lat);
lat:long_name = "Latitude (typically midpoints)";
diff --git a/data/in_rec_zero.cdl b/data/in_rec_zero.cdl
index f85088d..89b17b1 100644
--- a/data/in_rec_zero.cdl
+++ b/data/in_rec_zero.cdl
@@ -20,7 +20,7 @@ variables:
"History global attribute.\n",
"" ;
:julian_day = 200000.04 ;
- :RCS_Header = "$Header: /cvsroot/nco/nco/data/in_rec_zero.cdl,v 1.2 2006/05/05 00:42:30 zender Exp $" ;
+ :RCS_Header = "$Header$" ;
data:
lon = 0, 90, 180, 270 ;
diff --git a/data/ncap.in b/data/ncap.in
index 8176575..2126e7d 100644
--- a/data/ncap.in
+++ b/data/ncap.in
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/ncap.in,v 1.37 2007/08/29 20:45:46 zender Exp $ -*-C-*-
+// $Header$ -*-C-*-
// Purpose: ncap netCDF Arithmetic Processor Demonstration/Test Script
diff --git a/data/ncap.in2 b/data/ncap.in2
index c09319a..8339b4f 100644
--- a/data/ncap.in2
+++ b/data/ncap.in2
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/ncap.in2,v 1.1 2002/05/23 18:16:45 zender Exp $ -*-C-*-
+// $Header$ -*-C-*-
// Purpose: ncap script #include'd by ncap.in to demonstrate file nesting
diff --git a/data/ncap2.in b/data/ncap2.in
index d7328b2..01f27f1 100644
--- a/data/ncap2.in
+++ b/data/ncap2.in
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/ncap2.in,v 1.37 2012/11/09 20:15:40 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Sample input script for ncap2
diff --git a/data/ncap2_tst.nco b/data/ncap2_tst.nco
index 3cf447b..b51d660 100644
--- a/data/ncap2_tst.nco
+++ b/data/ncap2_tst.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/ncap2_tst.nco,v 1.29 2012/05/17 09:21:22 hmb Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Test script for ncap2
diff --git a/data/ncl.ncl b/data/ncl.ncl
index d9734f7..fea82ab 100644
--- a/data/ncl.ncl
+++ b/data/ncl.ncl
@@ -1,4 +1,4 @@
-; $Header: /cvsroot/nco/nco/data/ncl.ncl,v 1.3 2014/09/22 21:38:34 zender Exp $
+; $Header$
; Purpose: NCL script to compare to NCO scripts for speed
diff --git a/data/nco_bnch.sh b/data/nco_bnch.sh
index c808dad..be1f476 100755
--- a/data/nco_bnch.sh
+++ b/data/nco_bnch.sh
@@ -1,6 +1,6 @@
#!/bin/sh
-# $Header: /cvsroot/nco/nco/data/nco_bnch.sh,v 1.5 2004/09/14 01:23:15 zender Exp $
+# $Header$
# Purpose: Benchmark NCO performance
diff --git a/data/netcdf4.nco b/data/netcdf4.nco
index 6e1fdd0..8354ef0 100644
--- a/data/netcdf4.nco
+++ b/data/netcdf4.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/netcdf4.nco,v 1.16 2013/02/09 03:43:36 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Sample input script for netCDF4-enabled ncap2
// Stress-test netCDF4 atomic types and features
diff --git a/data/psd.nco b/data/psd.nco
index 9f0c3f3..7276dfe 100644
--- a/data/psd.nco
+++ b/data/psd.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/psd.nco,v 1.10 2006/11/30 07:21:58 zender Exp $ -*-C-*-
+// $Header$ -*-C-*-
// Purpose: ncap script for particle size distributions
// Produces Table~\ref{tbl:lgn_stt_anl} in http://dust.ess.uci.edu/facts/psd/psd.pdf
diff --git a/data/psd_wrf.nco b/data/psd_wrf.nco
index c981e52..3b77975 100644
--- a/data/psd_wrf.nco
+++ b/data/psd_wrf.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/psd_wrf.nco,v 1.13 2007/05/16 05:02:48 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: ncap script for WRF particle size distributions
// Based on psd.nco
diff --git a/data/rgr.nco b/data/rgr.nco
index 2101794..186063f 100644
--- a/data/rgr.nco
+++ b/data/rgr.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/rgr.nco,v 1.12 2007/12/07 15:57:19 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
// Purpose: Linear and non-linear data regressions
diff --git a/data/swamp.sh b/data/swamp.sh
index c35f958..91d1c28 100755
--- a/data/swamp.sh
+++ b/data/swamp.sh
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/data/swamp.sh,v 1.7 2007/08/13 20:40:48 zender Exp $
+# $Header$
# Purpose: Demonstrate SWAMP usage
diff --git a/data/tst.nco b/data/tst.nco
index d71079d..3816f3d 100644
--- a/data/tst.nco
+++ b/data/tst.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/tst.nco,v 1.7 2006/06/17 23:25:12 zender Exp $ -*-C-*-
+// $Header$ -*-C-*-
// Purpose: ncap script for geophysical computations
diff --git a/data/udunits.dat b/data/udunits.dat
index 6ad92f2..bcea5fd 100644
--- a/data/udunits.dat
+++ b/data/udunits.dat
@@ -1,4 +1,4 @@
-# $Id: udunits.dat,v 1.1 2006/11/11 00:52:26 zender Exp $
+# $Id$
#
# The first column is the unit name. The second column indicates whether or
# not the unit name has a plural form (i.e. with an 's' appended).
diff --git a/data/xmp_500mb_hgt.nco b/data/xmp_500mb_hgt.nco
index ef00375..201a804 100644
--- a/data/xmp_500mb_hgt.nco
+++ b/data/xmp_500mb_hgt.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/xmp_500mb_hgt.nco,v 1.1 2008/05/30 12:49:58 zender Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
/* Purpose: Compute 500mb height using CCSM output fields:
Z3 [m] (Geopotential Height),
diff --git a/data/xmp_wnd_msk.nco b/data/xmp_wnd_msk.nco
index 04cd052..43b7c41 100644
--- a/data/xmp_wnd_msk.nco
+++ b/data/xmp_wnd_msk.nco
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/data/xmp_wnd_msk.nco,v 1.3 2008/08/07 17:25:20 scapps Exp $ -*-C++-*-
+// $Header$ -*-C++-*-
/* USAGE: ncap2 -O -S xmp_wnd_msk.nco in.nc out.nc */
// PARAMETERS------------------------------------------------------
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..35067cf
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,791 @@
+nco (4.5.0-1) unstable; urgency=low
+
+ * new upstream version (fxm)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 21 Jun 2014 12:25:08 -0700
+
+nco (4.4.9-1) unstable; urgency=low
+
+ * new upstream version (git, -x warn, crd att, cnk nco lfp, shuffle on, MM3->MM4 off, ncecat fix, climatology, ncra wgt)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 21 May 2014 12:25:07 -0700
+
+nco (4.4.8-1) unstable; urgency=low
+
+ * new upstream version (-A warn, PPC, cnk nco=rew+lfp, mabs/mebs/mibs())
+
+ -- Charlie Zender <zender at uci.edu> Mon, 09 Feb 2014 12:25:05 -0700
+
+nco (4.4.7-1) unstable; urgency=low
+
+ * new upstream version (-0->-1, rename bug, cnk xst, cnk_min, -X, rew, cnk_in)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 26 Nov 2014 12:25:04 -0700
+
+nco (4.4.6-1) unstable; urgency=low
+
+ * new upstream version (ncks -V, ncap2 -s -S, DAP cnf, ncra pck/mss/prm, HDF4, ncrename, NC4_SRD, -0)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 01 Oct 2014 12:25:03 -0700
+
+nco (4.4.5-1) unstable; urgency=low
+
+ * new upstream version (https DAP, gxvx, mk, ncl_var, dmn_cmn, ncpdq, C:)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 26 Aug 2014 12:25:02 -0700
+
+nco (4.4.4-1) unstable; urgency=low
+
+ * new upstream version (-x tolerance, --rad orphans, CERES, mmr, ncwa msk)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 29 May 2014 12:25:01 -0700
+
+nco (4.4.3-1) unstable; urgency=low
+
+ * new upstream version (DAP srd fix, nsm brd, rgr wrk)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 02 April 2014 12:25:00 -0700
+
+nco (4.4.2-1) unstable; urgency=low
+
+ * new upstream version (ncra.c mmr 4 LLVM/clang, -X, rx nsx, cll_mth, ncwa sng)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 20 Feb 2014 12:24:59 -0700
+
+nco (4.4.1-1) unstable; urgency=low
+
+ * new upstream version (-X grp, cnk_dmn grp, ncra_no_fl_close bugfix)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 29 Jan 2014 12:24:58 -0700
+
+nco (4.4.0-1) unstable; urgency=low
+
+ * new upstream version (hash, dyn mmr, ncra.c fixes, hdf4, autocnv, hdn, cnk)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 09 Jan 2014 12:24:57 -0700
+
+nco (4.3.9-1) unstable; urgency=low
+
+ * new upstream version (nces, XML, ncatted NaN)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 06 Dec 2013 12:24:55 -0700
+
+nco (4.3.8-1) unstable; urgency=low
+
+ * new upstream version (ncatted groups, -7, namespace safety)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 06 Nov 2013 12:24:54 -0700
+
+nco (4.3.7-1) unstable; urgency=low
+
+ * new upstream version (--mrd, --hdf4, --xml, ncrename groups)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 17 Oct 2013 12:24:53 -0700
+
+nco (4.3.6-1) unstable; urgency=low
+
+ * new upstream version (--flt, ncpdq/ncecat 1 rec dmn, ncwa/ncea fixes)
+
+ -- Charlie Zender <zender at uci.edu> Fri, 27 Sep 2013 12:24:52 -0700
+
+nco (4.3.5-1) unstable; urgency=low
+
+ * new upstream version (ncea/ncra/ncrcat groups, --dbl, ncwa hyp/avg, ncpdq rvr)
+
+ -- Charlie Zender <zender at uci.edu> Fri, 20 Sep 2013 12:24:51 -0700
+
+nco (4.3.4-1) unstable; urgency=low
+
+ * new upstream version (CDL legibility, ncpdq -U fix, --hdf_upk)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 01 Aug 2013 12:24:50 -0700
+
+nco (4.3.3-1) unstable; urgency=low
+
+ * new upstream version (CDL, XML, ncrename/ncwa groups)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 24 Jul 2013 12:24:48 -0700
+
+nco (4.3.2-1) unstable; urgency=low
+
+ * new upstream version (-X aux, ncflint/ncpdq -g -G --unn)
+
+ -- Charlie Zender <zender at uci.edu> Fri, 05 Jul 2013 12:24:47 -0700
+
+nco (4.3.1-1) unstable; urgency=low
+
+ * new upstream version (ncbo -G, --unn, symmetric, grp_brd)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 01 May 2013 12:24:46 -0700
+
+nco (4.3.0-1) unstable; urgency=low
+
+ * new upstream version (ncbo -g, ncatted NULs, ncap2 rounding)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 28 Mar 2013 12:24:45 -0700
+
+nco (4.2.6-1) unstable; urgency=low
+
+ * new upstream version (--rec_apn, non-atomics, --fix_rec_crd, scope)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 19 Mar 2013 13:23:36 -0700
+
+nco (4.2.5-1) unstable; urgency=low
+
+ * new upstream version (fix ncks mk/fix_rec_dmn bugs, metadata printing)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 29 Jan 2013 11:30:42 -0800
+
+nco (4.2.4-1) unstable; urgency=low
+
+ * new upstream version (ncks & ncecat new xtr API, ncra bugfix, ncrename)
+
+ -- Charlie Zender <zender at uci.edu> Mon, 21 Jan 2013 14:15:53 -0800
+
+nco (4.2.3-1) unstable; urgency=low
+
+ * new upstream version (GPE, ncecat fix, group atts.)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 13 Nov 2012 16:00:42 -0700
+
+nco (4.2.2-1) unstable; urgency=low
+
+ * new upstream version (ncks groups, hdr_pad, NULs, _'s, ncecat GAG)
+
+ -- Charlie Zender <zender at uci.edu> Mon, 29 Oct 2012 16:00:42 -0700
+
+nco (4.2.1-1) unstable; urgency=low
+
+ * new upstream version (no_tmp_fl, NC_DISKLESS, -'ve -d, DRN/MRO)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 02 Aug 2012 16:00:42 -0700
+
+nco (4.2.0-1) unstable; urgency=low
+
+ * new upstream version (ncra -y ttl, %i fmt, ncwa NaN, nc__open, MVS)
+
+ -- Charlie Zender <zender at uci.edu> Mon, 11 Jun 2012 16:00:42 -0700
+
+nco (4.1.0-1) unstable; urgency=low
+
+ * new upstream version (sorts/maps, MD5, chmod, NaNs, MM3)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 29 Mar 2012 21:45:15 -0800
+
+nco (4.0.9-1) unstable; urgency=low
+
+ * new upstream version (array(), revert NO_FILL, rounding)
+ * debian/rules
+ - remove CPPFLAGS += -DHAVE_NETCDF4_H hack
+
+ -- Charlie Zender <zender at uci.edu> Mon, 13 Feb 2012 21:45:15 -0800
+
+nco (4.0.7-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Don't ship .la files (Closes: #622527).
+
+ -- Luk Claes <luk at debian.org> Sun, 26 Jun 2011 09:34:27 +0200
+
+nco (4.0.8-1) unstable; urgency=low
+
+ * new upstream version (HPSS, NOFILL, CF bounds & noleap, ncatted, NC_BYTE)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 21 Apr 2011 12:06:41 -0800
+
+nco (4.0.7-1) unstable; urgency=low
+
+ * new upstream version (fix bug_hyp_dgn)
+ * debian/control
+ - require libcurl4-gnutls-dev as per Ivan Shmakov
+
+ -- Charlie Zender <zender at uci.edu> Mon, 21 Feb 2011 11:30:56 -0700
+
+nco (4.0.6-1) unstable; urgency=low
+
+ * new upstream version (clang, YYYYMMDD-averaging, xtr ass crd)
+ * debian/rules
+ - build with dap-netcdf netcdf4 udunits2 by default
+
+ -- Charlie Zender <zender at uci.edu> Fri, 14 Jan 2011 11:30:56 -0700
+
+nco (4.0.5-1) unstable; urgency=low
+
+ * new upstream version (fix ncks hyp NC4 bug, ncra CF crd bug)
+ * debian/control
+ - require libudunits2-0, libudunits2-dev
+ * debian/rules
+ - build with DEB_BUILD_OPTIONS='dap-netcdf netcdf4 udunits2'
+
+ -- Charlie Zender <zender at uci.edu> Thu, 13 Oct 2010 11:30:56 -0700
+
+nco (4.0.4-1) unstable; urgency=low
+
+ * new upstream version (chunking everywhere, ncrename bugfix, ncks -m)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 02 Sep 2010 20:34:38 -0700
+
+nco (4.0.3-1) unstable; urgency=low
+
+ * new upstream version (cf_date() bug, ncbo bug, configure tweaks)
+ * Switch to dpkg-source 3.0 (quilt) format
+
+ -- Charlie Zender <zender at uci.edu> Thu, 02 Sep 2010 18:05:48 -0700
+
+nco (4.0.2-1) unstable; urgency=low
+
+ * new upstream version (namespace, ncatted NUL, ncap2 1-d arrays)
+
+ -- Charlie Zender <zender at uci.edu> Sun, 27 Jun 2010 11:04:41 -0700
+
+nco (4.0.1-1) unstable; urgency=low
+
+ [ Charlie Zender ]
+ * new upstream version (fix_rec_dmn, mk_rec_dmn, .ncrename)
+ * debian/copyright
+ - remove John Burkhardt
+ * debian/control
+ - add ${misc:Depends}
+
+ [ Francesco Paolo Lovergine ]
+ * Policy bumped to 3.8.4.
+ * Debhelper level set to 7.
+ * Added me as uploaders.
+ * Removing top dir info file.
+
+ -- Francesco Paolo Lovergine <frankie at debian.org> Mon, 26 Apr 2010 22:51:21 +0200
+
+nco (4.0.0-1) unstable; urgency=low
+
+ * new upstream version (fitting, calendar, bilinear interp)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 05 Jan 2010 12:06:24 -0800
+
+nco (3.9.9-1) unstable; urgency=low
+
+ * new upstream version (chunking, NC_STRING, GSL stats/interp, rebasing)
+ * debian/control
+ - Standards-Version: 3.8.2
+ * debian/copyright
+ - includes everyone now
+ * debian/compat
+ - change from 4 to 5
+
+ -- Charlie Zender <zender at uci.edu> Tue, 14 Jul 2009 18:31:07 -0700
+
+nco (3.9.8-1) unstable; urgency=low
+
+ * new upstream version (DAP-netCDF, sort(), array(), GSL RNG)
+ * debian/control
+ - BR libnetcdf-dev
+ - debhelper > 5
+ * debian/rules
+ - remove --disable-rpath
+
+ -- Charlie Zender <zender at uci.edu> Wed, 29 Apr 2009 13:28:07 -0700
+
+nco (3.9.7-1) unstable; urgency=low
+
+ * new upstream version (improves GSL builds, ncap2 threading)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 18 Mar 2009 16:43:24 -0700
+
+nco (3.9.6-1) UNRELEASED; urgency=low
+
+ * new upstream version (fixes MSA bug, adds GSL)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 22 Jan 2009 13:27:19 -0800
+
+nco (3.9.5-1) UNRELEASED; urgency=low
+
+ * new upstream version (MSA everywhere)
+
+ -- Charlie Zender <zender at neige.ess.uci.edu> Sun, 11 May 2008 17:39:52 +0200
+
+nco (3.9.4-1) UNRELEASED; urgency=low
+
+ * new upstream version (-3, -X, --msa_usr_rdr, ncap2 mask, WIN32)
+
+ -- Charlie Zender <zender at uci.edu> Mon, 03 Mar 2008 14:03:30 +0100
+
+nco (3.9.3-1) UNRELEASED; urgency=low
+
+ * new upstream version (SWAMP, ncecat -u, wget, ncap OpenMP, GCC 4.2)
+
+ -- Charlie Zender <zender at uci.edu> Sat, 08 Dec 2007 15:26:47 +0100
+
+nco (3.9.2-1) UNRELEASED; urgency=low
+
+ * new upstream version (GPL3, _FillValue, UDUnits2, ncap2 printing)
+
+ -- Charlie Zender <zender at uci.edu> Wed, 29 Aug 2007 09:01:52 -0700
+
+nco (3.9.1-1) UNRELEASED; urgency=low
+
+ * new upstream version (supports netCDF4/HDF deflation)
+
+ -- Charlie Zender <zender at uci.edu> Fri, 29 Jun 2007 11:46:16 -0700
+
+nco (3.9.0-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * debian/rules
+ - fixed FTBFS if build twice in a row (Closes: #442685)
+ * debian/doc-base
+ - changed section
+ * debian/watch
+ - added
+ * debian/control
+ - added Homepage field
+
+ -- Sandro Tosi <matrixhasu at gmail.com> Sat, 19 Apr 2008 16:28:04 +0200
+
+nco (3.9.0-1) unstable; urgency=low
+
+ * new upstream version (includes netCDF4 atomic types)
+
+ -- Charlie Zender <zender at uci.edu> Tue, 22 May 2007 19:04:54 -0700
+
+nco (3.2.0-1) unstable; urgency=low
+
+ * new upstream version (includes rmssdn arithmetic bugfix)
+
+ -- Charlie Zender <zender at uci.edu> Thu, 19 Apr 2007 22:19:00 -0700
+
+nco (3.1.9-1) unstable; urgency=low
+
+ * new upstream version
+
+ -- Charlie Zender <zender at uci.edu> Sat, 10 Mar 2007 18:47:03 -0800
+
+nco (3.1.8-2) UNRELEASED; urgency=low
+
+ * Bump version for upload to Debian unstable
+
+ -- Charlie Zender <zender at uci.edu> Wed, 24 Jan 2007 10:03:48 -0800
+
+nco (3.1.8-1) experimental; urgency=low
+
+ * ncap2 methods work, nascent _FillValue support
+ * Add psd.nco example for ncap2
+ * Fix in.nc and tst path issues in make check
+ * Change long description
+ * Remove unused make command in control
+ * Change section from "math" to "science" in control and doc-base
+ * Remove ncap_lex.c, ncap_yacc.[ch] from tarball
+ * Remove pgiCC OpenMP threading on ncap2
+ * Exclude all .cvsignore's
+ * Replace 'unstable' with 'UNRELEASED' from 3.0.0-3.1.7
+ * Change debian/nco.doc-base to debian/doc-base
+ * Create non-native debian packages
+ * Add @dircategory netCDF to nco.texi
+ * Removed debian/docs, alphabetize control, less precise debhelper
+ version, refine copyright history, remove debian/doc, de-comment
+ debian/rules,
+ * Remove debian/[postinst,prerm, postrm]. These only contained
+ instructions for handling *.info files. Rely on dh_installinit to
+ automagically create these instructions.
+ * Include ncap2 executable and man page
+ * Add package dependencies on antlr, libantlr-dev
+ * Kludge HTML documentation location in nco.doc-base
+ * Compile-time determination of _Fillvalue vs. missing_value
+
+ -- Charlie Zender <zender at uci.edu> Wed, 6 Dec 2006 08:22:22 -0800
+
+nco (3.1.7-1) UNRELEASED; urgency=low
+
+ * ncap2 double-parsing, incorporate downstream debian nco_2.9.9-3 patches
+ * Most NCO bug-fixes and features from 2.9.9--3.1.7:
+ - ncap2 not incorporated yet because antlr dependencies not handled
+ - libnco_c++ and lib_nco++ not build yet
+
+ -- Charlie Zender <zender at localhost.localdomain> Fri, 10 Nov 2006 21:32:19 -0800
+
+nco (3.1.6-1) UNRELEASED; urgency=low
+
+ * Support stride in all dimensions for all hyperslabbing operators
+
+ -- Charlie Zender <zender at uci.edu> Mon, 18 Sep 2006 13:08:36 -0700
+
+nco (3.1.5-1) UNRELEASED; urgency=low
+
+ * Improved Pathscale/PGI/Intel compiler support, ncap2 arrays
+
+ -- Charlie Zender <zender at uci.edu> Tue, 29 Aug 2006 10:48:55 -0700
+
+nco (3.1.4-1) UNRELEASED; urgency=low
+
+ * fix ncbo memory bug, timers, implement --clean and --dirty
+
+ -- Charlie Zender <zender at localhost.localdomain> Wed, 7 Jun 2006 21:24:03 -0700
+
+nco (3.1.3-1) UNRELEASED; urgency=low
+
+ * ncap2 attribute propagation, CF coordinates, ncwa -b -B, ncra 0 records
+
+ -- Charlie Zender <zender at localhost.localdomain> Tue, 30 May 2006 12:57:44 -0700
+
+nco (3.1.2-1) UNRELEASED; urgency=low
+
+ * packed data fixed, ncap2 in configure, ncra/ncea/ncwa behavior
+
+ -- Charlie Zender <zender at localhost.localdomain> Fri, 21 Apr 2006 17:46:30 -0700
+
+nco (3.1.1-1) UNRELEASED; urgency=low
+
+ * C++ builds work again, ssdap, nco++, 4.0-alpha11-compatible
+
+ -- Charlie Zender <zender at elnino.ess.uci.edu> Mon, 30 Jan 2006 22:23:53 -0800
+
+nco (3.1.0-1) UNRELEASED; urgency=low
+
+ * MPI ZKB, configure netcdf4/mpi, ncwa MRV, ncap rnd_nbr(), netcdf4-alpha10
+
+ -- Charlie Zender <zender at elnino.ess.uci.edu> Fri, 2 Dec 2005 20:37:09 -0800
+
+nco (3.0.3-1) UNRELEASED; urgency=low
+
+ * icc9, netCDF4, configure MPI and netCDF4, better SMP
+
+ -- Charlie Zender <zender at localhost.localdomain> Fri, 28 Oct 2005 12:38:14 -0700
+
+nco (3.0.2-1) UNRELEASED; urgency=low
+
+ * icc, OPeNDAP, ftp, sftp, .netrc, hdr_pad, cf, bm for MPI + OPeNDAP
+
+ -- Charlie Zender <zender at uci.edu> Mon, 22 Aug 2005 23:49:39 -0700
+
+nco (3.0.1-1) UNRELEASED; urgency=medium
+
+ * Memory purification, ncap exponentiation bugfix, threading bugfix
+
+ -- Charlie Zender <zender at uci.edu> Fri, 10 Jun 2005 10:46:09 -0700
+
+nco (3.0.0-1) UNRELEASED; urgency=low
+
+ * 1. ncap bugfix 2. Add benchmarking 3. libnco_c++ implements nco_var_puta()
+
+ -- Charlie Zender <zender at uci.edu> Thu, 24 Mar 2005 12:46:10 -0800
+
+nco (2.9.9-3) unstable; urgency=low
+
+ * QA upload.
+ * Add missing build dependencies on flex and bison.
+ * debian/rules: Add (empty) binary-indep target. Closes: #395719.
+ * Conforms to Standards version 3.7.2.
+
+ -- Matej Vela <vela at debian.org> Sat, 28 Oct 2006 16:22:58 +0200
+
+nco (2.9.9-2) unstable; urgency=medium
+
+ * QA upload.
+ * Remove unnecessary build dependency on netcdfg3; let netcdfg-dev pull
+ in the appropriate library package. Closes: #352026.
+ * Move libnco from /usr/lib to /usr/lib/nco. Providing a public library
+ would require a separate libnco-2.9.9 package, which is overkill ATM.
+ * data/udunits.dat: Used only with UDUnits, which is not packaged for
+ Debian; remove.
+ * debian/copyright:
+ - Update FSF address.
+ - Remove outdated (and no longer required) list of changes.
+ * debian/nco.doc-base:
+ - Word-wrap description.
+ - Change section to Apps/Math.
+ - Add a stanza for info files.
+ * debian/postinst, debian/prerm, debian/info: Invoke install-info
+ manually with a section argument as nco.info doesn't specify one.
+ * debian/postrm: Remove cruft.
+ * debian/rules:
+ - Pass CFLAGS to configure.
+ - When DEB_BUILD_GNU_TYPE and DEB_HOST_GNU_TYPE are the same, pass
+ only --build to configure (otherwise it enters cross-compile mode).
+ - Let dh_strip handle DEB_BUILD_OPTIONS=nostrip.
+ * Conforms to Standards version 3.6.2.
+
+ -- Matej Vela <vela at debian.org> Sun, 12 Feb 2006 10:21:06 +0100
+
+nco (2.9.9-1) unstable; urgency=medium
+
+ * QA upload integrating long due changes due to Charlie Zender and Rorik Peterson.
+ (closes: #254627,#254625,#265106)
+ * Maintainer set to QA team.
+
+ [ Rorik Peterson ]
+
+ * 1. ncbo threading 2. ncpdq -P packing
+
+ -- Francesco Paolo Lovergine <frankie at debian.org> Sat, 25 Sep 2004 12:14:26 +0200
+
+nco (2.9.8-1) unstable; urgency=low
+
+ * 1. ncpdq, 2. ncwa --msk_sng consolidated mask switch, and 3. C99
+
+ -- Charlie Zender <zender at uci.edu> Sat, 7 Aug 2004 14:12:51 -0700
+
+nco (2.9.7-1) unstable; urgency=low
+
+ * MFO input files from stdin, OpenMP threading in ncra
+
+ -- Charlie Zender <zender at uci.edu> Tue, 6 Jul 2004 13:49:28 -0700
+
+nco (2.9.6-1) unstable; urgency=low
+
+ * Add -o fl_out option, change ncwa -o meaning, AMD64 build tweaks
+
+ -- Charlie Zender <zender at uci.edu> Tue, 15 Jun 2004 09:44:15 -0700
+
+nco (2.9.5-1) unstable; urgency=low
+
+ * ncflint interpolation is commutative, libnco_c++ *.hh headers installed
+
+ -- Charlie Zender <zender at uci.edu> Wed, 2 Jun 2004 22:15:49 -0700
+
+nco (2.9.4-1) unstable; urgency=low
+
+ * ncecat works on scalar files, AIX GCC, improved nco_tst.pl
+
+ -- Charlie Zender <zender at uci.edu> Fri, 21 May 2004 10:52:29 -0700
+
+nco (2.9.3-1) unstable; urgency=low
+
+ * ncra/ncea arithmetic works when missing_value equals zero or any intermediate sum
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Tue, 13 Apr 2004 17:18:37 -0700
+
+nco (2.9.2-1) unstable; urgency=medium
+
+ * Fix S/V, S%V, S^V, workaround broken UDUnits installations
+
+ -- Charlie Zender <zender at uci.edu> Tue, 23 Mar 2004 07:16:59 -0800
+
+nco (2.9.1-1) unstable; urgency=low
+
+ * prp_sei, fix ncwa unpacking bug
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Thu, 4 Mar 2004 17:03:18 -0800
+
+nco (2.9.0-1) unstable; urgency=low
+
+ * CF convention behaves like CSM, ncap corner cases, workaround GCC stack limitation
+
+ -- Charlie Zender <zender at uci.edu> Wed, 25 Feb 2004 15:51:29 -0800
+
+nco (2.8.8-1) unstable; urgency=low
+
+ * --enable-[optimize/debug]-custom works again on GCC
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Fri, 30 Jan 2004 15:31:09 -0800
+
+nco (2.8.7-1) unstable; urgency=low
+
+ * Default GCC builds work again, ncap packing works again
+
+ -- Charlie Zender <zender at uci.edu> Tue, 13 Jan 2004 11:43:47 -0800
+
+nco (2.8.6-1) unstable; urgency=low
+
+ * Add -Werror to GCC compiles, fix AIX and SGI builds
+
+ -- Charlie Zender <zender at uci.edu> Mon, 12 Jan 2004 12:12:48 -0800
+
+nco (2.8.5-1) unstable; urgency=low
+
+ * DODS support, configure.in rewrite, ncap attribute assignment fix
+
+ -- Charlie Zender <zender at uci.edu> Wed, 7 Jan 2004 14:27:38 -0800
+
+nco (2.8.4-1) unstable; urgency=high
+
+ * Fix bug with index-based hyperslabs introduced near 2.7.4
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Tue, 25 Nov 2003 11:53:04 -0800
+
+nco (2.8.3.5-1) unstable; urgency=low
+
+ * Special version halfway to 2.8.4 for ncap bugtesting
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Fri, 21 Nov 2003 14:47:14 -0800
+
+nco (2.8.3-1) unstable; urgency=low
+
+ * Fix ncap memory leak, nco_tst.sh regressions
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Fri, 14 Nov 2003 17:17:23 -0800
+
+nco (2.8.2-1) unstable; urgency=medium
+
+ * missing_value fix for ncbo
+
+ -- Charlie Zender <zender at uci.edu> Sun, 9 Nov 2003 23:28:25 -0800
+
+nco (2.8.1-1) unstable; urgency=low
+
+ * Variable wildcarding
+
+ -- Charlie Zender <zender at ashes.ess.uci.edu> Wed, 27 Aug 2003 11:51:16 -0700
+
+nco (2.8.0-1) unstable; urgency=low
+
+ * update sources, new operator 'ncbo' replaces 'ncdiff'
+
+ -- Rorik Peterson <rorik at chabuku.iarc.uaf.edu> Mon, 4 Aug 2003 10:38:58 -0800
+
+nco (2.7.2-1) unstable; urgency=low
+
+ * updated sources, changed control to build using 'configure', made nco-doc
+ package for documentation
+
+ -- Rorik Peterson <rorik at chabuku.iarc.uaf.edu> Sat, 29 Mar 2003 21:09:48 -0900
+
+nco (2.2.0-3) unstable; urgency=low
+
+ * Eliminated building of dvi, postscript, and pdf documentation due to
+ bugs in texinfo. (Closes: Bug#164977)
+
+ -- Brian Mays <brian at debian.org> Wed, 16 Oct 2002 09:30:31 -0400
+
+nco (2.2.0-2) unstable; urgency=medium
+
+ * Modified postinst to ignore an existing /usr/doc/$package directory.
+
+ -- Brian Mays <brian at debian.org> Wed, 20 Mar 2002 11:18:29 -0500
+
+nco (2.2.0-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Thu, 7 Feb 2002 05:42:36 -0500
+
+nco (2.0.0-4) unstable; urgency=low
+
+ * Fixed symlink /usr/doc -> ../share/doc.
+ * Fixed reference to GPL.
+ * Improved stripping of binaries.
+
+ -- Brian Mays <brian at debian.org> Fri, 1 Feb 2002 15:58:40 -0500
+
+nco (2.0.0-3) unstable; urgency=low
+
+ * Enabled building on all architectures. (Closes: Bug#121461,
+ Bug#124105)
+ * Fixed symlink /usr/doc -> ../share/doc.
+
+ -- Brian Mays <brian at debian.org> Sun, 27 Jan 2002 15:08:56 -0500
+
+nco (2.0.0-2) unstable; urgency=low
+
+ * Added build dependency on tetex-extra. (Closes: Bug#106770)
+
+ -- Brian Mays <brian at debian.org> Fri, 27 Jul 2001 09:09:49 -0400
+
+nco (2.0.0-1) unstable; urgency=low
+
+ * New upstream version.
+ * Removed "-g" gcc option as per policy.
+
+ -- Brian Mays <brian at debian.org> Mon, 9 Jul 2001 11:26:24 -0400
+
+nco (1.2.2-2) unstable; urgency=low
+
+ * Added nettcdf-bin to Build-Depends. (Closes: Bug#87094)
+
+ -- Brian Mays <brian at debian.org> Thu, 22 Feb 2001 15:58:00 -0500
+
+nco (1.2.2-1) unstable; urgency=low
+
+ * New upstream version.
+ * Updated man pages.
+
+ -- Brian Mays <brian at debian.org> Fri, 16 Feb 2001 16:21:26 -0500
+
+nco (1.2.1-3) unstable; urgency=low
+
+ * Fixed "Build-Depends". (Closes: Bug#85668)
+
+ -- Brian Mays <brian at debian.org> Mon, 12 Feb 2001 09:45:12 -0500
+
+nco (1.2.1-2) unstable; urgency=low
+
+ * Added patch from Christopher C. Chimelis <chris at debian.org> to
+ allow NCO to build on the alpha architecture. (Closes: Bug#71225)
+
+ -- Brian Mays <brian at debian.org> Sun, 10 Sep 2000 21:24:58 -0400
+
+nco (1.2.1-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Fri, 1 Sep 2000 10:46:01 -0400
+
+nco (1.2-1) unstable; urgency=low
+
+ * New upstream version.
+ * Added more source dependencies.
+
+ -- Brian Mays <brian at debian.org> Fri, 4 Aug 2000 17:13:16 -0400
+
+nco (1.1.48-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Fri, 19 May 2000 10:23:19 -0400
+
+nco (1.1.47-1) unstable; urgency=low
+
+ * New upstream version.
+ * Changed the control file to accurately reflect the supported
+ architectures for this package (alpha, arm, i386, and sparc).
+ (Closes: Bug#63943)
+
+ -- Brian Mays <brian at debian.org> Mon, 15 May 2000 12:42:19 -0400
+
+nco (1.1.46-1) unstable; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Sun, 12 Mar 2000 11:37:11 -0500
+
+nco (1.1.45-2) unstable; urgency=low
+
+ * Added patch from Jim Studt <jim at federated.com> to port nco to ARM.
+ (Closes: Bug#59095)
+
+
+ -- Brian Mays <brian at debian.org> Thu, 2 Mar 2000 14:55:03 -0500
+
+nco (1.1.45-1) unstable; urgency=low
+
+ * New upstream version.
+ * New license. (It is now GPL!!)
+
+ -- Brian Mays <brian at debian.org> Fri, 28 Jan 2000 11:32:14 -0500
+
+nco (1.1.43-2) non-free; urgency=low
+
+ * Added build-time dependencies. (Closes: Bug#55158)
+
+ -- Brian Mays <brian at debian.org> Mon, 17 Jan 2000 14:14:47 -0500
+
+nco (1.1.43-1) non-free; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Fri, 31 Dec 1999 10:49:09 -0500
+
+nco (1.1.42-1) non-free; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Sun, 12 Dec 1999 16:15:13 -0500
+
+nco (1.1.41-1) non-free; urgency=low
+
+ * New upstream version.
+
+ -- Brian Mays <brian at debian.org> Tue, 2 Nov 1999 10:43:35 -0500
+
+nco (1.1.39-1) non-free; urgency=low
+
+ * Initial release.
+
+ -- Brian Mays <brian at debian.org> Fri, 8 Oct 1999 13:25:40 -0400
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..7f8f011
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+7
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..380488f
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,19 @@
+Source: nco
+Section: science
+Priority: optional
+Maintainer: Charlie Zender <zender at uci.edu>
+Uploaders: Francesco Paolo Lovergine <frankie at debian.org>
+Build-Depends: debhelper (>= 7), antlr, bison, flex, gsl-bin, libgsl0-dev, libantlr-dev, netcdf-bin, libnetcdf-dev, libcurl4-gnutls-dev, texinfo, libudunits2-0, libudunits2-dev
+Standards-Version: 3.8.4
+Homepage: http://nco.sf.net/
+
+Package: nco
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: command-line operators to analyze netCDF files
+ NCO is a suite of programs known as operators. The operators are stand-alone,
+ command-line programs executable in a POSIX shell. Operators take one or more
+ HDF or netCDF files as input, perform operations (e.g., averaging,
+ hyperslabbing), and produce a netCDF output file. NCO was originally designed
+ to manipulate and analyze climate data, though it works on any netCDF format
+ datasets.
diff --git a/debian/convert b/debian/convert
new file mode 100644
index 0000000..a417169
--- /dev/null
+++ b/debian/convert
@@ -0,0 +1,68 @@
+#!/bin/sh
+# Script to convert texinfo style man pages to groff style man pages.
+#
+sed -e '/@cindex/d
+/^$/s/^/.PP/
+s/\\/\\\\/g
+s/"/@"/g
+s/@dots{}/.../g
+s/@noindent//g
+s/@code{\([^ }]*\)}\([^ ][^ ]*\) */
.BR \1 \2
/g
+s/@code{\([^}]*\)}\([^ ][^ ]*\) */
.BR "\1" \2
/g
+s/@code{\([^ }]*\)}\([^ ][^ ]*\)$/
.BR \1 \2/g
+s/@code{\([^}]*\)}\([^ ][^ ]*\)$/
.BR "\1" \2/g
+s/@code{\([^ }]*\)} */
.B \1
/g
+s/@code{\([^}]*\)} */
.B "\1"
/g
+s/@code{\([^ }]*\)}$/
.B \1/g
+s/@code{\([^}]*\)}$/
.B "\1"/g
+s/@command{\([^ }]*\)}\([^ ][^ ]*\) */
.BR \1 \2
/g
+s/@command{\([^}]*\)}\([^ ][^ ]*\) */
.BR "\1" \2
/g
+s/@command{\([^ }]*\)}\([^ ][^ ]*\)$/
.BR \1 \2/g
+s/@command{\([^}]*\)}\([^ ][^ ]*\)$/
.BR "\1" \2/g
+s/@command{\([^ }]*\)} */
.B \1
/g
+s/@command{\([^}]*\)} */
.B "\1"
/g
+s/@command{\([^ }]*\)}$/
.B \1/g
+s/@command{\([^}]*\)}$/
.B "\1"/g
+s/@file{\([^ }]*\)}\([^ ][^ ]*\) */
.BR \1 \2
/g
+s/@file{\([^}]*\)}\([^ ][^ ]*\) */
.BR "\1" \2
/g
+s/@file{\([^ }]*\)}\([^ ][^ ]*\)$/
.BR \1 \2/g
+s/@file{\([^}]*\)}\([^ ][^ ]*\)$/
.BR "\1" \2/g
+s/@file{\([^ }]*\)} */
.B \1
/g
+s/@file{\([^}]*\)} */
.B "\1"
/g
+s/@file{\([^ }]*\)}$/
.B \1/g
+s/@file{\([^}]*\)}$/
.B "\1"/g
+s/@var{\([^ }]*\)}\([^ ][^ ]*\) */
.IR \1 \2
/g
+s/@var{\([^}]*\)}\([^ ][^ ]*\) */
.IR "\1" \2
/g
+s/@var{\([^ }]*\)}\([^ ][^ ]*\)$/
.IR \1 \2/g
+s/@var{\([^}]*\)}\([^ ][^ ]*\)$/
.IR "\1" \2/g
+s/@var{\([^ }]*\)} */
.I \1
/g
+s/@var{\([^}]*\)} */
.I "\1"
/g
+s/@var{\([^ }]*\)}%/
.I \1/g
+s/@var{\([^}]*\)}$/
.I "\1"/g
+s/@dfn{\([^ }]*\)}\([^ ][^ ]*\) */
.IR \1 \2
/g
+s/@dfn{\([^}]*\)}\([^ ][^ ]*\) */
.IR "\1" \2
/g
+s/@dfn{\([^ }]*\)}\([^ ][^ ]*\)$/
.IR \1 \2/g
+s/@dfn{\([^}]*\)}\([^ ][^ ]*\)$/
.IR "\1" \2/g
+s/@dfn{\([^ }]*\)} */
.I \1
/g
+s/@dfn{\([^}]*\)} */
.I "\1"
/g
+s/@dfn{\([^ }]*\)}$/
.I \1/g
+s/@dfn{\([^}]*\)}$/
.I "\1"/g
+s/@samp{\([^ }]*\)}\([^ ][^ ]*\) */
.BR \1 \2
/g
+s/@samp{\([^}]*\)}\([^ ][^ ]*\) */
.BR "\1" \2
/g
+s/@samp{\([^ }]*\)}\([^ ][^ ]*\)$/
.IR \1 \2/g
+s/@samp{\([^}]*\)}\([^ ][^ ]*\)$/
.IR "\1" \2/g
+s/@samp{\([^ }]*\)} */
.B \1
/g
+s/@samp{\([^}]*\)} */
.B "\1"
/g
+s/@samp{\([^ }]*\)}$/
.B \1/g
+s/@samp{\([^}]*\)}$/
.B "\1"/g
+s/@\*//g
+s/@item */.TP
.B /
+s/``/\\(lq/g
+s/'"''"'/\\(rq/g
+/^[A-Z][A-Z]/s/^/.SH /
+s/@acronym{\([^}]*\)}/\1/g
+/@table/d
+/@end table/d
+s/@example/.RS/
+s/@end example/.RE/' | sed 's/
/\
+/g' | grep -v '^ *$'
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..82d520a
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,76 @@
+This is the Debian GNU/Linux prepackaged version of the netCDF Operators
+(NCO).
+
+This package was originally assembled by Brian Mays <brian at debian.org>
+from software obtained from ftp://ftp.cgd.ucar.edu/pub/zender/nco
+
+NCO package modifications for Debian GNU/Linux made from 1999--2002
+are Copyright (C) Brian Mays and were released under the GPL
+(on Debian systems see "/usr/share/common-licenses/GPL").
+
+Beginning March, 2003, Charlie Zender and Rorik Peterson took over
+NCO Debian package maintenance and merged the code back upstream.
+More information at package homepage http://nco.sourceforge.net
+
+On June 15, 2003, Charlie Zender changed the NCO license, except where
+explicitly noted otherwise, from GPL to GPL version 2 (not any later version).
+Also at this time the explicit exceptions to the GPL for compatibility with
+the HDF, netCDF, OPeNDAP, and UDUnits licenses were formally introduced.
+
+On July 22, 2007, Charlie Zender changed the NCO licenses, except where
+explicitly noted otherwise, from GPL2 to GPL3 (for code) and from
+FDL 1.1 (or any later version) to FDL 1.2 (or any later version) for
+documentation.
+
+On January 20, 2009, Charlie Zender changed the NCO license for documentation,
+except where explicitly noted otherwise, from FDL 1.2 (or any later version)
+to FDL 1.3 (or any later version).
+
+On July 15, 2009, Charlie Zender added Benjamin Sittler and John Burkhardt
+to this copyright file to reflect their copyrights. Both retain copyright
+to their work which is licensed BSD-style (freely redistributable so long
+as copyright notices are maintained).
+
+On July 15, 2009, Charlie Zender received copyright assignments from
+Henry Butowsky and Karen Schuchardt. Their names were removed from the
+copyright statements in the files where they had been listed:
+nco_msa.c, nco_msa.h, and nco_aux.c.
+
+On January 26, 2010, Charlie Zender removed John Burkhardt from this
+copyright file after removing his gamma function code (nco_gmm.c)
+from the source.
+
+NCO is copyright (C) 1995--2011 Charlie Zender
+Portions of the following NCO files are copyright by others:
+nco_getopt.c: Copyright 1997, 2000, 2001, 2002, Benjamin Sittler
+nco_getopt.h: Copyright 1997, 2000, 2001, 2002, Benjamin Sittler
+
+ License: GNU General Public License (GPL) Version 3
+ The full license text is at http://www.gnu.org/copyleft/gpl.html
+ and in the file nco/doc/LICENSE in the NCO source distribution.
+
+ As a special exception to the terms of the GPL, you are permitted
+ to link the NCO source code with the HDF, netCDF, OPeNDAP, and UDUnits
+ libraries and to distribute the resulting executables under the terms
+ of the GPL, but in addition obeying the extra stipulations of the
+ HDF, netCDF, OPeNDAP, and UDUnits licenses.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
+
+ The original author of this software, Charlie Zender, seeks to improve
+ it with your suggestions, contributions, bug-reports, and patches.
+ Please contact the NCO project at http://nco.sf.net or write to
+ Charlie Zender
+ Department of Earth System Science
+ University of California, Irvine
+ Irvine, CA 92697-3100
+
+On Debian GNU/Linux systems, the complete text of the GNU General
+Public License can be found in "/usr/share/common-licenses/GPL".
diff --git a/debian/doc-base b/debian/doc-base
new file mode 100644
index 0000000..e994703
--- /dev/null
+++ b/debian/doc-base
@@ -0,0 +1,16 @@
+Document: nco
+Title: NCO User's Guide
+Author: zender at uci.edu
+Abstract: This manual describes the netCDF Operators, NCO.
+ NCO is a suite of programs, or operators, that take netCDF files as
+ input, perform an operation (e.g. averaging or hyperslabbing) and
+ produce an output netCDF file.
+Section: Science/Data Analysis
+
+Format: info
+Index: /usr/share/info/nco.info.gz
+Files: /usr/share/info/nco.*
+
+Format: HTML
+Index: /usr/share/doc/nco/html/index.html
+Files: /usr/share/doc/nco/html/*.html
diff --git a/debian/files b/debian/files
new file mode 100644
index 0000000..4eff64e
--- /dev/null
+++ b/debian/files
@@ -0,0 +1 @@
+nco_4.2.0-1_i386.deb math optional
diff --git a/debian/info b/debian/info
new file mode 100644
index 0000000..e119b61
--- /dev/null
+++ b/debian/info
@@ -0,0 +1 @@
+doc/nco.info*
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..4b73364
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,146 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Purpose: debian/rules file for NCO
+# Copyright (C) 1999--2002 by Brian Mays
+# Copyright (C) 2003--2011 by Charlie Zender
+# Usage:
+# scp ~/nco/debian/rules givre.ess.uci.edu:nco/debian
+
+# Sample debian/rules that uses debhelper
+# GNU copyright 1997 to 1999 by Joey Hess
+
+# Modified to make a template file for a multi-binary package with separated
+# build-arch and build-indep targets by Bill Allombert 2001
+
+# Uncomment this to turn on verbose mode
+#export DH_VERBOSE=1
+
+# Export this to make some magic below work
+export DH_OPTIONS
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+ifeq ($(DEB_BUILD_GNU_TYPE), $(DEB_HOST_GNU_TYPE))
+ confflags := --build=$(DEB_BUILD_GNU_TYPE)
+else
+ confflags := --build=$(DEB_BUILD_GNU_TYPE) --host=$(DEB_HOST_GNU_TYPE)
+endif
+
+export CFLAGS := -Wall -g
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+# 20110114 Enable dap-netcdf netcdf4 udunits2 build options by default
+# Allow them to be turned off by putting disable-XXX in DEB_BUILD_OPTIONS
+ifneq (,$(findstring disable-dap-netcdf,$(DEB_BUILD_OPTIONS)))
+ confflags += --disable-dap-netcdf
+else
+ confflags += --enable-dap-netcdf
+endif
+ifneq (,$(findstring disable-netcdf4,$(DEB_BUILD_OPTIONS)))
+ confflags += --disable-netcdf4
+else
+ confflags += --enable-netcdf4
+endif
+ifneq (,$(findstring disable-udunits2,$(DEB_BUILD_OPTIONS)))
+ confflags += --disable-udunits2
+else
+ confflags += --enable-udunits2
+endif
+
+# Make Debian-default netCDF directories override development netCDF installations in, e.g., /usr/local
+# 20070721: This may inadvertently cause libtool to set set rpath
+# In turn this generates linda warnings about hard-coded rpath
+# Since their Debian packages exist, always enable GSL and ncap2
+# Environment variables NETCDF*, defined in Zender's bashrc, often confuse Debian
+# Debian requires that libraries are known by package-manager
+# Thus environment variables that point, e.g., to /usr/local, are unhelpful
+config.status: configure
+ dh_testdir
+# 20140413 call dh_autoreconf before calling configure (in build or configure target) per Debian Bug #744476
+ dh_autoreconf
+ LD_LIBRARY_PATH='' LDFLAGS='' NETCDF_INC='/usr/include' NETCDF_LIB='/usr/lib' NETCDF_ROOT='/usr' NETCDF4_ROOT='/usr' \
+ ./configure $(confflags) \
+ --prefix=/usr \
+ --infodir=/usr/share/info \
+ --libdir=/usr/lib/nco \
+ --mandir=/usr/share/man \
+ --enable-gsl \
+ --enable-ncap2 \
+ --disable-dap-opendap \
+ --disable-nco_cplusplus \
+ --disable-udunits \
+ --disable-static
+
+# Architecture
+build: build-arch
+
+build-arch: build-arch-stamp
+build-arch-stamp: config.status
+ $(MAKE)
+ cd doc && $(MAKE) html
+ cd doc && $(MAKE) nco.info
+# Documentation to distribute in future
+# cd doc && $(MAKE) nco.ps
+# cd doc && $(MAKE) nco.dvi
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-arch-stamp build-indep-stamp config-stamp
+ [ ! -f Makefile ] || $(MAKE) distclean
+
+ rm -f data/big.nc
+# 20140413 call dh_autoreconf_clean before dh_clean in the clean target per Debian Bug #744476
+ dh_autoreconf_clean
+ dh_clean
+
+install: install-arch
+
+install-arch:
+ dh_testdir
+ dh_testroot
+ dh_clean -a
+ dh_installdirs -a
+# Commands to install architecture part of package into debian/tmp
+ $(MAKE) install DESTDIR=$(CURDIR)/debian/nco
+ rm `find $(CURDIR)/debian -name '*.la'`
+# NCO installs header files by default, which Debian does not want (yet)
+ dh_install -a --exclude="*.h *.hh"
+
+# Must not depend on anything
+# This is to be called by binary-arch/binary-multi in another 'make' thread
+binary-common:
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs doc/ChangeLog
+ dh_installdocs
+ install -d debian/nco/usr/share/doc/nco/html
+ install -m 644 doc/nco.html/*.html debian/nco/usr/share/doc/nco/html
+ rm -f debian/nco/usr/share/info/dir
+ dh_installinfo
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+# Build architecture independant packages using the common target
+binary-indep: build install
+
+# Build architecture dependant packages using the common target
+binary-arch: build-arch install-arch
+ $(MAKE) -f debian/rules DH_OPTIONS=-a binary-common
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install install-arch
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..ad1989f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://dust.ess.uci.edu/nco/src/nco-(.*)\.tar\.gz
diff --git a/doc/.gitignore b/doc/.gitignore
new file mode 100644
index 0000000..01ed32d
--- /dev/null
+++ b/doc/.gitignore
@@ -0,0 +1,22 @@
+# Git-ignore patterns for ~/nco/doc
+/Makefile
+
+/nco.html
+/nco.info*
+/nco.ps.gz
+/nco.ps
+/nco.pdf
+/nco.txt
+/nco.xml
+
+/nco.aux
+/nco.cp
+/nco.cps
+/nco.dvi
+/nco.fn
+/nco.ky
+/nco.log
+/nco.pg
+/nco.toc
+/nco.tp
+/nco.vr
diff --git a/doc/ANNOUNCE b/doc/ANNOUNCE
index 25f2dc4..07351b2 100644
--- a/doc/ANNOUNCE
+++ b/doc/ANNOUNCE
@@ -1,114 +1,108 @@
-$Header: /cvsroot/nco/nco/doc/ANNOUNCE,v 1.772 2015/02/16 23:33:48 zender Exp $ -*-text-*-
+$Header$ -*-text-*-
-The netCDF Operators NCO version 4.4.8 are ready.
+The netCDF Operators NCO version 4.5.0 are ready.
http://nco.sf.net (Homepage)
http://dust.ess.uci.edu/nco (Homepage "mirror")
-NCO now implements a major new feature: lossy compression.
-This is distinct from the packing (scale_factor+add_offset) that
-NCO has long supported. The new lossy compression feature is
-activated by specifying desired level of precision in terms of
-either the total number of significant digits or the number of
-significant digits after (or before) the decimal point.
-These precision features are lumped together under the generic
-name Precision-Preserving Compression (PPC), summarized below.
+This release includes small feature improvements in chunking,
+deflation, and attribute handling during dimension reduction.
+Also improvements in clarity and consistency of messages.
+While chunking is an esoteric feature for many, its importance
+is increasing as the move to netCDF4 (classic) continues.
+The chunking defaults and flexibility have reached a new level
+of robustness in this release.
-Specifying more reasonable and optimized chunking maps has been
-made easier by the addition of a new "best practices" policy
-which implements Rew's balanced chunking for three-dimensional
-variables, and Lefter Product chunking for all others.
+The main new awesome feature is that ncra understands weights.
+Finally. Applying uneven weights to different input files was
+too clunky. This release is dedicated to the intrepid souls who
+use NCO to generate climatologies that require uneven weights.
+This release should make that task much easier.
-New ncwa/ncra/nces arithmetic operators mabs(), mebs(), and mibs()
-simplify statistical analysis.
-
-Work on NCO 4.4.9 is underway, still focused on stability and speed.
-This includes more netCDF4 mop-up and new chunking features.
+Work on NCO 4.5.0 has commenced and will support regridding,
+additional ncra flexibility with weights, and easier builds on
+supercomputer systems that use modules.
Enjoy,
Charlie
NEW FEATURES (full details always in ChangeLog):
-A. NCO will now store data at a per-variable precision level.
- We call this Precision-Preserving Compression (PPC). PPC currently
- understands two types of precision. Users can specify either the
- total Number of Significant Digits (NSD) or the Decimal Significant
- Digits (DSD), meaning the number of significant digits after (or
- before) the decimal point. For example, NSD=5 tells NCO to retain 5
- significant digits. Specifying DSD=3 or DSD=-2 causes NCO to
- preserve the number rounded to the nearest thousandth or hundred,
- respectively.
- Under the hood, NSD uses bitmasking for quantization, while DSD
- utilizes rounding. The bitmasking/rounding results in consecutive
- zero-bits ending the IEEE-754 storage of each floating point
- number. Standard byte-stream compression techniques, such as the
- DEFLATE compression used by gzip (and in HDF5), compress these
- zero-bits more efficiently than unrounded numbers.
- The net result is PPC makes netCDF files skinnier when compressed.
- Compression is internal with netCDF4 and external (e.g., gzip or
- bzip2) with netCDF3. Space savings can be large.
- And face it, how often does your precision exceed 3 digits?
- PPC data can also be packed to save additional space.
- And don't worry, coordinate variables are not rounded :)
- Thanks to Rich Signell for suggesting lossy compression for NCO.
- ncks --ppc default=5 --ppc temperature=3 in.nc out.nc
- ncks --ppc AER.?,AOD.?,ARE.?,AW.?,BURDEN.?=3 in.nc out.nc
- ncpdq --ppc default=4 --ppc grid_area=15 in.nc out.nc
- http://nco.sf.net/nco.html#ppc has extensive documentation.
-
-B. New "nco" chunking policy and modified "rew" chunking map:
- Policy "nco" is a virtual option that implements the best
- (in the subjective opinion of the authors) policy and map
- for typical usage. This combination will evolve with time.
- As of NCO version 4.4.8, this virtual policy implements
- map_rew for 3-D variables and map_lfp for all other variables.
- For the time being, map_rew does the same, i.e., it also
- calls map_lfp when variables are not 3-D. This ensures that
- Rew's balanced chunking is used on variables for which it
- applies, and another sensible default (lfp = Lefter Product)
- is used on all other variables big enough to chunk.
- ncks --cnk_plc=nco in.nc out.nc
- ncks --cnk_map=rew in.nc out.nc
+A. NCO has improved default performance of deflation and chunking.
+ Our "best practices" chunking (map/policy=nco) is now default when
+ manually deflating netCDF3 files into netCDF4 files.
+ This invokes Rew's balanced chunking for three-dimensional
+ variables, and LeFter-Product (cnk_map=lfp) chunking for others.
+ LFP chunking, in turn, implements more reasonable defaults when
+ the variable size is smaller than a single chunksize.
+ This reduces excessive chunk sizes for many small variables.
+ Shuffle is now turned-on by default when manually deflating files.
+ This restores behavior from the NCO 4.3.x series, and can improve
+ compression ratios by 10-30% relative to not shuffling.
+ Copying multi-dimensional record variables from netCDF3 to netCDF4
+ files no longer invokes the MM3 workaround.
+ This speeds-up deflation of netCDF3 datasets.
+ ncks -O -4 -L 1 netCDF3.nc netCDF4.nc
http://nco.sf.net/nco.html#cnk
-C. NCO dimension-reducing operators (ncra, ncwa, nces) now support
- three new arithmetic operations to facilitate statistics:
- mabs(), mebs(), and mibs(). These compute the maximum, mean, and
- minimum absolute value, respectively. They are invoked with the
- -y or --op_typ switch in the same manner as max/min/avg:
- ncwa -y mabs in.nc out.nc # Maximum absolute value
- ncra -y mebs in.nc out.nc # Mean absolute value
- nces -y mibs in.nc out.nc # Minimum absolute value
- http://nco.sf.net/nco.html#op_typ
-
-D. NCO warns when appended output type differs from input type.
- Previously NCO would not warn or die when the user (usually
- inadvertently) wrote data of one type into a destination meant
- for a different type. These commands would therefore complete
- without warning:
- ncks -C -O -v double_var ~/nco/data/in.nc ~/foo.nc
- ncrename -O -v double_var,float_var ~/foo.nc
- ncks -C -A -v float_var ~/nco/data/in.nc ~/foo.nc
- Now the user is warned though the operation is still permitted.
- http://nco.sf.net/nco.html#-A
+B. ncwa now eliminates dimensions from the "coordinates" attribute
+ after collapsing them. This helps ensure that rank-reduced
+ variables become completely independent from their former
+ dimensions. The former presence of collapsed dimensions continues
+ to be indicated by the "cell_methods" attribute.
+ ncwa -O -a lat in.nc out.nc
+ http://nco.sf.net/nco.html#coordinates
+ http://nco.sf.net/nco.html#cell_methods
+ http://nco.sf.net/nco.html#ncwa
+
+C. NCO now warns users and suggest workarounds in situations when
+ operators behave correctly, though perhaps not as expected,
+ including:
+ 1. When coordinate variables intended to be excluded by -x and -C
+ may nonetheless appear in output file, and suggest workaround
+ 2. When hyperslabs are specified for multi-dimensional
+ "coordinates"
+
+D. NCO now respects the CF "climatology" attribute: The variable
+ pointed to by this attribute is treated as a pseudo-coordinate
+ variable, and is extracted by default with any referring variable.
+ Climatology variables now obey the same arithmetic rules as
+ coordinates and are exempted from certain operations.
+ Their treatment is identical to that of "bounds" variables.
+ This command now retrieves the named variable, its coordinates (if
+ any), and any variables named in the "ancillary_variable",
+ "bounds", "climatology", and "coordinates" attributes:
+ ncks -v temperature in.nc out.nc
+ http://nco.sf.net/nco.html#climatology
+
+E. ncra now accepts user-specified weights with the -w switch.
+ When no weight is specified, ncra continues its old behavior
+ and weights each record (e.g., time slice) equally.
+ Weights specified with -w wgt may take one of two forms.
+ Fist, the wgt argument may be a comma-separated list of values by
+ which to weight each input file. Or, the wgt argument may be
+ the name of a weighting variable present in every input file.
+ The variable may be a scalar or a one-dimensional record variable.
+ Scalar weights are applied uniformly to the entire file (i.e., a
+ per-file weight), while one-dimensional weights apply to each
+ corresponding record (i.e., per-record weights). Two applications
+ of weights with ncra include easier generation of accurate averages
+ of seasonal statistics, and of accurate averages of quantities
+ sampled with a dynamically changing timestep.
+ ncra -w 31,31,28 dec.nc jan.nc feb.nc out.nc
+ ncra -w delta_tm in1.nc in2.nc in3.nc out.nc
+ http://nco.sf.net/nco.html#ncra
BUG FIXES:
-A. ncrename had problems when renaming netCDF4 coordinates.
- These problems appear fixed but now there are new ones when
- renaming netCDF4 attributes. These will go away when Unidata
- finishes fixing rename() routines in the netCDF4 library.
- http://nco.sf.net#bug_nc4_rename
-
-B. Fix ncks bug dumping files with multiple long dimension names.
- This means you, NASA AIRS.
+A. Fix ncecat in group aggregation mode (i.e., ncecat --gag) so it
+ can no longer use uninitialized file pointers.
KNOWN PROBLEMS DUE TO NCO:
This section of ANNOUNCE reports and reminds users of the
existence and severity of known, not yet fixed, problems.
- These problems occur with NCO 4.4.8 built/tested with netCDF
+ These problems occur with NCO 4.5.0 built/tested with netCDF
4.3.3-rc3 (20150129) on top of HDF5 hdf5-1.8.13 with:
cd ~/nco;./configure # Configure mechanism -or-
@@ -139,32 +133,7 @@ B. NOT YET FIXED (NCO problem?)
KNOWN PROBLEMS DUE TO BASE LIBRARIES/PROTOCOLS:
-A. NOT YET FIXED (netCDF4 problem)
- Renaming attributes in netCDF4 enhanced file deletes attributes.
-
- Demonstration with netCDF <= 4.3.3-rc3:
- ncrename -O -a /g1/lon at units,new_units ~/nco/data/in_grp.nc ~/foo.nc
- ncks -v /g1/lon ~/foo.nc
-
- Possibly new manifestation of already reported bug NCF-177
- Renaming netCDF4 coordinate variables or dimensions "succeeds" but
- corrupts (sets to _FillValue) values in the output dataset.
- Full description here http://nco.sf.net#bug_nc4_rename
-
- Demonstration with netCDF <= 4.3.2 (fixed in 4.3.3-rc3?):
- ncrename -O -v time,newrec ~/nco/data/in_grp.nc ~/foo.nc
- ncks --cdl -g // -v newrec -d time,0 -C ~/foo.nc
-
- 20141007: Problem reported by Parker Norton
- 20141008: Problem reported to Unidata
- 20141010: Verified by Unidata.
- 20141112: Verified problem still exists
- 20150129: Coordinate problem fixed with 4.3.3-rc3?
- 20150202: Attribute renaming in netCDF4 files deletes attributes
- Bug tracking: https://www.unidata.ucar.edu/jira/browse/NCF-177
- Workaround: Convert to netCDF3, rename, convert back to netCDF4
-
-B. NOT YET FIXED (netCDF4 or HDF5 problem?)
+A. NOT YET FIXED (netCDF4 or HDF5 problem?)
Specifying strided hyperslab on large netCDF4 datasets leads
to slowdown or failure with recent netCDF versions.
@@ -179,7 +148,7 @@ B. NOT YET FIXED (netCDF4 or HDF5 problem?)
Workaround #1: Use NCO 4.4.6 or later (avoids nc_var_gets())
Workaround #2: Convert file to netCDF3 first, then use stride
-C. NOT YET FIXED (would require DAP protocol change?)
+B. NOT YET FIXED (would require DAP protocol change?)
Unable to retrieve contents of variables including period '.' in name
Periods are legal characters in netCDF variable names.
Metadata are returned successfully, data are not.
@@ -194,7 +163,7 @@ C. NOT YET FIXED (would require DAP protocol change?)
Bug tracking: https://www.unidata.ucar.edu/jira/browse/NCF-47
-D. NOT YET FIXED (would require DAP protocol change)
+C. NOT YET FIXED (would require DAP protocol change)
Correctly read scalar characters over DAP.
DAP non-transparency: Works locally, fails through DAP server.
Problem, IMHO, is with DAP definition/protocol
diff --git a/doc/ChangeLog b/doc/ChangeLog
index 386eb6b..f52ea4a 100644
--- a/doc/ChangeLog
+++ b/doc/ChangeLog
@@ -1,3 +1,335 @@
+2015-05-22 Charlie Zender <zender at uci.edu>
+
+ * NCO 4.5.0 release procedure:
+ Changes since nco-4.4.9: fxm
+ cd ~/nco;git commit -a -m "Version 4.5.0 release: "
+ git tag -d 4.5.0;git push origin :refs/tags/4.5.0
+ git tag -a 4.5.0 -m 'Version 4.5.0: ';git push --tags
+
+ * Undo crippling of ncra --wgt wgt_nm for further debugging
+
+ * NCO 4.4.9 release procedure:
+ Changes since nco-4.4.8: git, -x warn, crd att, cnk nco lfp, shuffle on, MM3->MM4 off, ncecat fix, climatology, ncra wgt
+ cd ~/nco;git commit -a -m "Version 4.4.9 release: "
+ git tag -d nco-4.4.9;git push origin :refs/tags/nco-4.4.9
+ git tag -d 4.4.9;git push origin :refs/tags/4.4.9
+ git tag -a 4.4.9 -m 'Version 4.4.9: ';git push --tags
+
+ * Cripple ncra. Re-tag. Re-release with new tag format so GitHub tarball naming conventions work.
+
+2015-05-21 Charlie Zender <zender at uci.edu>
+
+ * NCO 4.4.9 release procedure:
+ Changes since nco-4.4.8: git, -x warn, crd att, cnk nco lfp, shuffle on, MM3->MM4 off, ncecat fix, climatology, ncra wgt
+ cd ~/nco;git commit -a -m "Version nco-4.4.9 release: "
+ git tag -d nco-4.4.9;git push origin :refs/tags/nco-4.4.9
+ git tag -a nco-4.4.9 -m 'Version 4.4.9: ';git push --tags
+
+ * Put nco_sng2kvm() in nco_sng_utl.c where it belongs. Fixes configure link problems.
+
+2015-05-20 Charlie Zender <zender at uci.edu>
+
+ * Allow wgt_nm to not be in extraction list
+
+ * Implement main logic for --wgt wgt_nm per-record weighting
+
+ * Per-file weighting with --wgt wgt_arr works fine
+
+2015-05-19 Charlie Zender <zender at uci.edu>
+
+ * Add some infrastructure to accept weight names, e.g., ncra --wgt=time_dlt
+
+ * Correct normalization in ncra --wgt and combine into multiplication by one pre-normalized factor
+
+ * Treat climatology variables as pseudo-coordinates like bounds variables
+
+ * Re-base climatology variables in ncra/ncrcat
+
+2015-05-18 Charlie Zender <zender at uci.edu>
+
+ * Apply per-file weights/normalization to averaged non-coordinate variables
+
+ * ncra reads optional per-file weights with new command line -w, --wgt switch
+
+2015-05-17 Charlie Zender <zender at uci.edu>
+
+ * Obtain destination grid interfaces/boundaries and remap matrix from mapping file
+
+2015-05-15 Charlie Zender <zender at uci.edu>
+
+ * All regression tests pass, 4.4.9 release once configure-builds work on yellowstone and rhea
+
+ * Recent rhea upgrade uses szip in icc netcdf, so (re-)add SZ and SZ_LIB flags to Makefile, Makefile.old
+
+ * Rhea icc 13.1.3 (gcc version 4.4.7 compatibility) requires -D_BSD_SOURCE on files that #include nameser.h
+
+ * Fix ncecat --gag mode use of uninitialized file pointers
+
+2015-05-14 Charlie Zender <zender at uci.edu>
+
+ * Shuffle never, to my knowledge, increases filesize, so shuffle by default when manually deflating
+
+ * LFP chunking uses "reasonable defaults" when var_sz < cnk_sz_ttl
+
+ * Turn-off MM3 workaround for MM3->MM4 copying to speed-up compression induced chunking
+
+ * Choose output chunking map/policy = rew/all rather than xst/xst for netCDF3 input
+
+2015-05-13 Charlie Zender <zender at uci.edu>
+
+ * Split Tempest library calls into separate function, nco_rgr_tps()
+
+2015-05-12 Charlie Zender <zender at uci.edu>
+
+ * Improve error message when nco_lmt.c encounters hyperslab requests on 2-D "coordinates"
+
+2015-05-11 Charlie Zender <zender at uci.edu>
+
+ * Crude version of nco_rgr_map()
+
+2015-05-07 Charlie Zender <zender at uci.edu>
+
+ * Describe SCRIP remapping in nco_rgr.c
+
+2015-05-06 Charlie Zender <zender at uci.edu>
+
+ * Segregate parts of nco_sld.[ch] into nco_ppc.[ch] and nco_rgr.[ch]
+
+2015-05-05 Charlie Zender <zender at uci.edu>
+
+ * Situate nco_rgr_ctl() between main() and all regridding routines
+
+2015-05-04 Charlie Zender <zender at uci.edu>
+
+ * Tidy string functions by DYW and PVN
+
+ * Makefile generates LINUX_C?? compiler defaults for MACOSX
+
+2015-04-30 Charlie Zender <zender at uci.edu>
+
+ * Introduce special variable handling with --rgr_var
+
+ * Wait until after ESMC_Finalize() to free dynamic memory provided to ESMF
+
+2015-04-27 Charlie Zender <zender at uci.edu>
+
+ * Improve nco_rgr_esmf() genericity
+
+2015-04-26 Charlie Zender <zender at uci.edu>
+
+ * Refine MACOSX linking for libesmf.a
+
+ * Fix bug in call to ESMC_GridCreateFromFile(). Simple ESMF regridding works.
+
+2015-04-23 Charlie Zender <zender at uci.edu>
+
+ * Annotate ESMF variables and calls
+
+ * Add regression test for unchunking variables with _Shuffle set
+
+2015-04-21 Charlie Zender <zender at uci.edu>
+
+ * Utilize extensible functions to format/access Tempest regridding commands
+
+ * Enumerate Tempest (tps) rename commands
+
+2015-04-20 Charlie Zender <zender at uci.edu>
+
+ * Add dummy call to Tempest remap GenerateRLLMesh
+
+2015-04-19 Charlie Zender <zender at uci.edu>
+
+ * Eliminate borken nco_sng2array() (which failed on single-element lists) in favor of nco_lst_prs_2D()
+
+ * Merge rgr (formerly dyw) branch back into master
+
+2015-04-17 Charlie Zender <zender at uci.edu>
+
+ * Use generic NC_SHUFFLE and NC_NOSHUFFLE tokens
+
+2015-04-15 Charlie Zender <zender at uci.edu>
+
+ * Set shuffle to false before unchunking variables. Fixes bug #74 reported by Dave Allured.
+
+2015-04-13 Charlie Zender <zender at uci.edu>
+
+ * Support GCC under MacPorts on MacOSX using
+ export LINUX_CC='gcc-mp-4.9'
+ export LINUX_CXX='g++-mp-4.9 -std=c++11'
+ So far compiling works but library archiving and linking does not so may need
+ export LINUX_AR='gcc-ar-mp-4.9'
+
+ * Fix MacOSX Yosemite LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) issues:
+ 'register' storage class specifier is deprecated [-Werror,-Wdeprecated-register]
+
+2015-04-08 Charlie Zender <zender at uci.edu>
+
+ * Changed name of dyw branch to rgr (for "regrid")
+
+ * Add to configure: -lesmf -lrt -lgfortran -ldl -lnetcdff -lnetcdf_c++
+ Most are found but -lesmf does not link on MACOSX due to clang/gfortran cross-compilation
+
+ * Merge changes from master into dyw branch:
+ git checkout dyw;git merge master
+
+2015-04-06 Charlie Zender <zender at uci.edu>
+
+ * Quiet printing extended filetype for dbg_lvl=2
+
+ * Revamp regridding command-line interface, initialization, and deallocation
+
+2015-04-06 Charlie Zender <zender at uci.edu>
+
+ * Makefile/ESMF appears to pass regression tests
+
+ * Fix memory issues with rgr_arg
+
+2015-04-01 Charlie Zender <zender at uci.edu>
+
+ * Re-built MACOSX with XTools 6.2 clang 6.0 LLVM 3.5 for OS 10.10 Yosemite: No problems
+
+ * Add regression test for changing _FillValue in netCDF4 file
+
+ * Turn-off flg_netCDF4_rename_trick in nco_att_utl.c if NC_LIB_VERSION >= 434
+
+2015-03-25 Charlie Zender <zender at uci.edu>
+
+ * Add cf2.cdl to test different approaches to CF group extension questions
+
+2015-03-24 Charlie Zender <zender at uci.edu>
+
+ * Various typo corrections to documentation
+
+2015-03-19 Charlie Zender <zender at uci.edu>
+
+ * Add --enable_esmf option to configure
+
+ * Add EMSF option to Makefile
+
+ * Move ESMF functions to nco_sld.[ch]
+
+2015-03-18 Charlie Zender <zender at uci.edu>
+
+ * Fix bugs in dyw branch
+
+2015-03-10 Charlie Zender <zender at uci.edu>
+
+ * Tag nco-4.4.9-alpha to test new release procedure
+ cd ~/nco;git commit -a -m "Version nco-4.4.9-alpha"
+ git tag -d nco-4.4.9-alpha;git push origin :refs/tags/nco-4.4.9-alpha
+ git tag -a nco-4.4.9-alpha -m 'Version 4.4.9-alpha: git, -x warn, crd att, cnk nco';git push --tags
+
+ * Build on rhea.ccs.ornl.edu
+
+ * Finish cnk_plc=nco implementation so plc/map=nco/nco means all/rew
+
+ * Document "coordinates" attribute modification
+
+2015-03-09 Dingying Wei <dywei at glace>
+
+ * Test git change as dyw
+
+2015-03-09 Charlie Zender <zender at uci.edu>
+
+ * Quiet printing of extended filetype for dbg_lvl=2
+
+2015-03-09 Charlie Zender <zender at uci.edu>
+
+ * Created remote upstream branches dyw, hmb, and pvn
+
+ * Change on master by csz
+
+ * Refine .gitignore's for configure-make
+
+ * Fix regression tests to account for new "coordinates" attributes
+
+ * Eliminate dimensions from "coordinates" attribute after collapsing them
+
+2015-03-08 Charlie Zender <zender at uci.edu>
+
+ * Tighten new -x warning WARNING
+
+2015-03-07 Charlie Zender <zender at uci.edu>
+
+ * Warn when coordinate variables intended to be excluded by -x and -C was not invoked
+
+2015-02-26 Charlie Zender <zender at uci.edu>
+
+ * Add .gitignore's to clean up git status output
+
+2015-02-25 Charlie Zender <zender at uci.edu>
+
+ * Create csz branch for local work on 4.4.9
+
+2015-02-24 Charlie Zender <zender at uci.edu>
+
+ * Replace SF source addresses with GitHub source addresses
+
+ * Document Git transition procedure
+
+ * Remove CVS keyword expansions by copying un-expanded originals over from CVS tree
+
+ * Create README.md for Github
+
+ * Clean-up ChangeLog
+
+ * Worked on CVS->SVN-->Git migration all week. Preserving tags is hard.
+
+ * Final procedure was something like:
+ # Generate dumpfile
+ cvs2svn -v --encoding=ascii --encoding=latin_1 --dumpfile=/home/zender/nco_20150216_dumpfile -s /home/zender/svn > ~/cvs2svn.txt
+
+ rsync -aiv nco_20150216_dumpfile zender,nco at web.sf.net:
+ ssh -t zender,nco at shell.sourceforge.net create
+ mv /home/project-web/nco/nco_20150216_dumpfile .
+
+ # Initialize SF SVN repository
+ svnadmin create /home/project-web/nco/svn
+ # Do hard work
+ svnadmin load /home/project-web/nco/svn < /home/project-web/nco/nco_20150216_dumpfile
+ # Check-out (failed)
+ svn checkout --username=zender svn+ssh://zender@svn.code.sf.net/p/nco/svn/ ~/nco-svn
+
+ # Initialize local SVN repository
+ cd;mkdir svn;svnadmin create svn
+ # Do hard work
+ svnadmin load svn < nco_20150216_dumpfile
+ # Check-out
+ svn checkout file:///home/zender/svn/trunk/nco ~/nco_svn
+
+ # Create local Git repository
+ /bin/rm -r -f ~/nco
+ mkdir -p ~/nco
+ cd ~/nco
+
+ # Convert SVN to Git with git svn (actual command used, ~18.6 MiB compressed to clone)
+ # http://git-scm.com/book/en/v2/Git-and-Other-Systems-Migrating-to-Git
+ git svn clone file:///home/zender/svn/trunk/nco --authors-file=/home/zender/nco_authors.txt --ignore-paths='^CVSROOT' --no-metadata
+
+ # Move tags to be proper Git tags, move other references to be local branches
+ /bin/cp -Rf .git/refs/remotes/origin/tags/* .git/refs/tags/
+ /bin/rm -Rf .git/refs/remotes/origin/tags
+ /bin/cp -Rf .git/refs/remotes/* .git/refs/heads/
+ /bin/rm -Rf .git/refs/remotes
+
+ # Convert SVN to Git with svn2git (ultimately not used)
+ # https://github.com/nirvdrum/svn2git
+ sudo aptitude install git-core git-svn ruby rubygems
+ sudo gem install svn2git
+ # Loses all tags, produces small (~19 MiB compressed to clone) repository
+ svn2git file:///home/zender/svn/trunk/nco --trunk / --authors ~/nco_authors.txt --verbose
+ # Maintains tags but takes forever (ETA ~6 days)
+ svn2git file:///home/zender/svn --authors ~/nco_authors.txt --exclude '^CVSROOT.*' --trunk trunk/nco --nobranches --verbose
+
+ # Push new local Git repository to GitHub
+ git remote add origin https://github.com/czender/nco.git
+ git push origin --all
+ git push origin --tags
+ git push --set-upstream origin master
+
+ # Clone from GitHub
+ git clone https://github.com/czender/nco.git ~/nco
+
2015-02-16 Charlie Zender <zender at uci.edu>
* NCO 4.4.8 release procedure:
@@ -670,8 +1002,7 @@
2014-04-16 Pedro Vicente <pvicente at uci.edu>
- * nco_prc_cmn_nsm_att() Process (define, write) variables belonging to ensembles in both files (ncbo);
- special "attribute lookup" ensemble version
+ * nco_prc_cmn_nsm_att() Process (define, write) variables belonging to ensembles in both files (ncbo); special "attribute lookup" ensemble version
2014-04-16 Charlie Zender <zender at uci.edu>
@@ -6233,7 +6564,7 @@
2007-09-17 Charlie Zender <zender at uci.edu>
- * Add big.nc to CLEANFILES to (hopefully) fix Debian FTBFS problem
+ * Add big.nc to CLEANFILES to (hopefully) fix Debian FTBFS problem
with two consecutive builds
2007-09-12 Charlie Zender <zender at uci.edu>
@@ -6331,7 +6662,7 @@
* Change licenses from GPL2 and FDL1.1 to GPL3 and FDL1.2 for code
and documentation, respectively
- * Try to prevent debian rules configure/libtool from invoking RPATH
+ * Try to prevent debian rules configure/libtool from invoking RPATH
2007-07-19 Charlie Zender <zender at uci.edu>
@@ -7134,7 +7465,7 @@
omp_flg, nco_D_flg, fl_out
* Kludge for pgcc compiler to workaround C99 designated initializers
- Timers should be OK but DDRA answers for ncbo, ncwa should not be
+ Timers should be OK but DDRA answers for ncbo, ncwa should not be
trusted with pgcc (or any C++ compiler).
2006-08-22 Charlie Zender <zender at uci.edu>
@@ -7143,7 +7474,7 @@
likely due to ccache inadvertently mixing OpenMP-enabled and
dis-abled object code. Must be more careful about that in future.
This resolves TODO nco765 and 766
-
+
* Add more informative OpenMP diagnostics
* Fix OpenMP flag-passing in Makefile for Intel icc compilers
@@ -7154,7 +7485,7 @@
* Fix specialized nco_bm.pl file processing for tms_lng.nc
This resolves TODO nco767.
-
+
2006-08-10 Charlie Zender <zender at uci.edu>
* pgcc -c9x currently fails to handle C99 designated initializers
@@ -7226,18 +7557,18 @@
2006-06-08 Charlie Zender <zender at uci.edu>
* Re-release this as 3.1.4
-
+
* Always initialize flg_ddra=False in ddra_info
Fixes spurious TIMER info on compilers (like xlc) which do not zero data
* Re-release this as 3.1.4
-
- * Take mtd timer out of loop in ncra.c and ncecat.c
+
+ * Take mtd timer out of loop in ncra.c and ncecat.c
2006-06-07 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-3_1_4
- Changes since nco-3_1_4:
+ Changes since nco-3_1_4:
timers, clean/dirty switches
* Add timer start and end calls to all operators
@@ -7330,7 +7661,7 @@
correctly with -C/-c switches.
* Move some nm_id_sct var_lst routines from nco_var_utl.c to
- nco_var_lst.c
+ nco_var_lst.c
* Split CF coordinate convention nco_cnv_cf_crd_add()
out of nco_var_lst_ass_crd_add() so it can be called
@@ -7348,7 +7679,7 @@
* Found bug in libnco_c++: library does incorrectly initializes
function parameters which default to CPP macros, e.g., NC_NOERR.
These parameters cannot be over-ridden by non-default values.
- Same problems occurs whether passing rcd_opt as reference or not.
+ Same problems occurs whether passing rcd_opt as reference or not.
Attempting to fix bug by creating named constant with global
library visibility.
@@ -7358,8 +7689,8 @@
Old code at nco.sf.net is a hodgepodge of erratic commits over past week.
* Finished hand-merging one week's patches from development on
- multiple machines due to sourceforge.net outage.
- Master code is now on ashes. Everything from about
+ multiple machines due to sourceforge.net outage.
+ Master code is now on ashes. Everything from about
20060506--20060512 was originally "out-of-tree" during outage.
2006-05-13 Charlie Zender <zender at uci.edu>
@@ -7406,7 +7737,7 @@
* Make zero-record record variables always fixed in arithmetic operators
This ensures airthmetic loops to not encounter empty variables
-
+
2006-05-06 Charlie Zender <zender at uci.edu>
* Improve warning messages in ncra for size 0 records
@@ -8301,21 +8632,21 @@
* Implement/fix OpenMP in MPI_FAKE portions of all mpnc*.c codes
- * Use icc ncecat bld/Makefile compilation fix for mpicc too
+ * Use icc ncecat bld/Makefile compilation fix for mpicc too
* Use nco_mpi_get() to return MPI implementation information
Invoke with undocumented ncks --mpi switch
- This (unwisely?) introduces mpi.h into libnco.a via nco_ctl.h
+ This (unwisely?) introduces mpi.h into libnco.a via nco_ctl.h
Formerly, mpi.h only appeared in front-end codes
Still no MPI _calls_ are in libnco.a, just header information
-
+
* Allow MPI and OpenMP to both be true
Now MPI_FAKE tests OpenMP so that MPI_FAKE operators are
plug-compatible replacements for UP/SMP operators.
No code actually takes advantage hybrid MPI/OMP since the MPI and
- OpenMP implementations are currently orthogonal in mpnc*.c level.
+ OpenMP implementations are currently orthogonal in mpnc*.c level.
This may change if benchmarks uncover good reasons to hybridize
-
+
* Accomodate LAM MPI environment
No difference between regressions with LAM and with MPICH2
@@ -8334,7 +8665,7 @@
* Verify UP and SMP mpncra execute successfully while MPI mpncra
still hangs just before writing output file
-
+
* Clean up mpncra.c to build cleanly with MPI_FAKE
* Fix mpncecat (same ole' strlen(fl_out_tmp) bug)
@@ -8357,7 +8688,7 @@
* Regression test shows mpncbo commutivity modifications work!
Same two-file framework should be implemented in ncflint/mpncflint
- * Only allow master MPI process to strlen(fl_out_tmp)
+ * Only allow master MPI process to strlen(fl_out_tmp)
This fixes nasty regressions which I introduced into Gayathri's codes
Still need to understand why it caused the bug in the first place
@@ -8367,7 +8698,7 @@
* Declare all MPI-specific variables in one place in mpncbo.c
This removes all warnings when spoofing MPI with MPI_FAKE
-
+
* Clean up bld/Makefile header
* Rename FAKE_MPI switch to MPI_FAKE in bld/Makefile
@@ -8395,7 +8726,7 @@
Documented different test results in MPI section of TODO
* Committed recent mpncbo.c commutivity changes
-
+
2005-09-09 Charlie Zender <zender at uci.edu>
* Complete and clean-up NCO MPI synonyms in prg_prs()
@@ -8434,12 +8765,12 @@
* cvs tag -c nco-3_0_2
Changes since nco-3_0_1: icc, OPeNDAP, ftp, sftp, .netrc, hdr_pad,
- cf, bm for MPI + OPeNDAP
+ cf, bm for MPI + OPeNDAP
* Plug two small leaks in ncks when printing and fl_out=NULL
* Plug double-free() error when fl_out=NULL in ncatted
- Double-free() errors cause operator failure on Fedora, which
+ Double-free() errors cause operator failure on Fedora, which
has a security-hardened glibc. Hence this was probably an
unreported headache for many Fedora NCO users since 3.0.0 or
3.0.1. Recommend they upgrade and this spurs release of 3.0.2.
@@ -8454,17 +8785,17 @@
1. Correctly handles cases where input variable orders are different
2. Correctly diagnoses (and attempts to broadcast) mis-matched dimensions
3. Can serve as template for similar [mp]ncflint re-write (TODO 578)
- 4. Improved logic needs to be merged into mpncbo.c so mpncbo
+ 4. Improved logic needs to be merged into mpncbo.c so mpncbo
passes (currently deprecated) regression test ncbo #8 (TODO 579).
5. Works well when nbr_var_fix_1>nbr_var_fix_2 so long as discrepant
variables are type fix not type prc but needs list merge to
work when nbr_var_fix_1<nbr_var_fix_2 (TODO 581).
- 6. Works for rank(var_1) > rank(var_2), not rank(var_2) > rank(var_1)
+ 6. Works for rank(var_1) > rank(var_2), not rank(var_2) > rank(var_1)
Pre-compute broadcast size before var_def(out_id,var_out) (TODO 552)
* Completely fixes TODO 550. Serial NCO regression test is spotless again.
- * Plug memory leak caused by ncbo two list re-write
+ * Plug memory leak caused by ncbo two list re-write
2005-08-19 Harry Mangalam <hjm at tacgi.com>
@@ -8477,12 +8808,12 @@
* Invert order of operands given to nco_var_sbt() by ncbo
This fixes numerics of ncbo regression TODO 550
However, operand order to nco_var_[sbt,dvd,...] is non-intuitive
- and should be reversed NCO-wide in the future (now TODO 576)
+ and should be reversed NCO-wide in the future (now TODO 576)
2005-08-18 Charlie Zender <zender at uci.edu>
* Add SFTP and .netrc-based password-protected FTP (to ESG) regression tests
-
+
* Add stub for wget-based regression test
* Fix ncbo regression to fail for right reason
@@ -8492,7 +8823,7 @@
2005-08-17 Harry Mangalam <hjm at tacgi.com>
* Add MPI bits to nco_bm.pl to test the MPI'ed operators.
-
+
2005-08-17 Charlie Zender <zender at uci.edu>
* Add MPI_PRC option for bld/Makefile to pass through to nco_bm.pl
@@ -8508,12 +8839,12 @@
* Add hooks for output file-mode specification to ncks.c
This may break compatibility with netCDF nersion 3.5.x and hence OPeNDAP
Currently shrouded by #ifdef NETCDF4 tokens
-
+
2005-08-12 Harry Mangalam <hjm at tacgi.com>
- * small mods to nco_bm.pl to track diff in wall vs (sys+user) to
+ * small mods to nco_bm.pl to track diff in wall vs (sys+user) to
get idea of how much time is lost to I/O (theoretically)
-
+
2005-08-13 Charlie Zender <zender at uci.edu>
* Finished ncbo heart transplant: Symmetric subtraction still not working
@@ -8521,10 +8852,10 @@
Valgrind indicates new code is leak-proof except for one
double-free() caused by ncap_var_cnf_dmn()
Code appears to be commit-able since it's cleaner and extensible
-
+
* Extended dual list method into heart of ncbo
Saved last known working version as ~/ncbo.last_known_working.c
-
+
* Change NCAR_CCSM_FORMAT to CNV_CCM_CCSM_CF, ARM_FORMAT to CNV_ARM
2005-08-11 Charlie Zender <zender at uci.edu>
@@ -8541,12 +8872,12 @@
* change nco_fl_utl.c to use passive ftp rather than active
(many ftp servers no longer work with active requests)
- * change nco_bm.pl to do net tests (except for those requiring a
- specific login or location). Tests ftp (see 1st change) and
+ * change nco_bm.pl to do net tests (except for those requiring a
+ specific login or location). Tests ftp (see 1st change) and
DODS if compiled with DODS/DAP.
2005-08-08 Harry Mangalam <hjm at tacgi.com>
- * final updates to nco_bm.pl for testing DAP (reduced number of
+ * final updates to nco_bm.pl for testing DAP (reduced number of
files requested under DAP (also becasue of bug in DAP that
refuses > 30 files at once in some cases.
@@ -8558,7 +8889,7 @@
* major mods to nco_bm.pl to add DODS support to testing
- * may be a bug in DODS server code that doesn't allow >30 files in
+ * may be a bug in DODS server code that doesn't allow >30 files in
one session - posted.
2005-08-03 Charlie Zender <zender at uci.edu>
@@ -8580,8 +8911,8 @@
Henceforth NCO access to password protected FTP sites (like ESG) is scriptable!
* FTP uses .netrc, if present, in all cases instead of anonymous FTP
- This essentially breaks anonymous FTP
-
+ This essentially breaks anonymous FTP
+
2005-07-22 Charlie Zender <zender at uci.edu>
* Finished SFTP support in nco_fl_mk_lcl()
@@ -8642,18 +8973,18 @@
libnco_c++.a works as intended. Have not tried with autotools yet.
Have not yet tested MPI programs with icc.
- * -axW flag causes icc 8.1 to die compiling ncecat
+ * -axW flag causes icc 8.1 to die compiling ncecat
This appears to be an icc bug
Implement target-specific workaround in bld/Makefile
-
+
* Implement Intel 8.1 compiler compatibility
2005-07-07 Charlie Zender <zender at uci.edu>
* Fix small leak in ncap_var_stretch() TODO ncap74
ncap now appears to be leak-proofed!
-
- * Added lots or mirror fl_1=fl_2 code to ncbo in preparation
+
+ * Added lots or mirror fl_1=fl_2 code to ncbo in preparation
for attempted solution to subtraction problems related to
asymmetry. In plain English: copied lots of code, didn't solve any
problems yet.
@@ -8666,11 +8997,11 @@
2005-07-03 Charlie Zender <zender at uci.edu>
* Realized that ncbo bug is longstanding/systemic and may
- require re-writing approach to determining confmormality of var_2.
+ require re-writing approach to determining confmormality of var_2.
Current code is expected to break when second file has same name
but different-sized dimensions, or has same-sized dimensions in
different order, i.e., all sort of corner-cases.
-
+
2005-07-02 Charlie Zender <zender at uci.edu>
* Remove thr_nbr argument from ncatted in nco_bm.pl
@@ -8681,14 +9012,14 @@
ncra -O -C -v rec_var_flt_mss_val_dbl ~/nco/data/in.nc ~/foo_avg.nc
ncbo -O -C -v rec_var_flt_mss_val_dbl ~/nco/data/in.nc ~/foo_avg.nc ~/foo.nc
free(): invalid pointer 0x80e4a98!
-
+
* Verified DAP 3.5.1 works with both build mechanisms with
gcc NCO/gcc DAP (Debian elnino), and with icc NCO/gcc DAP
* Report NC_64BIT_OFFSET rather than old-fashioned LARGEFILE test
with -r option in nco_lbr_vrs_prn()
- * Change 'DODS' to 'DAP' or 'OPeNDAP' where possible in codbase,
+ * Change 'DODS' to 'DAP' or 'OPeNDAP' where possible in codbase,
e.g., 'enable-dap', make DAP=Y, ENABLE_DAP
* Support OPeNDAP 3.5.x in bld/Makefile
@@ -8720,14 +9051,14 @@
variable
Options:
- 1. Ask Unidata whether they have tested SMP robustness of netCDF
- reads under demanding battery of conditions?
- 2. Scrutinize uninitialized data reported by icc/valgrind?
+ 1. Ask Unidata whether they have tested SMP robustness of netCDF
+ reads under demanding battery of conditions?
+ 2. Scrutinize uninitialized data reported by icc/valgrind?
3. Write own SMP on read test?
4. ???
-
+
* Finish making opaque types nco_byte, nco_char, nco_int self-consistent
-
+
2005-06-30 Charlie Zender <zender at soot.ess.uci.edu>
* Change nco_long to nco_int to allow for future 64-bit type called nco_long
@@ -8738,7 +9069,7 @@
* Explicitly cast NC_CHAR type as "char" (rather than "unsigned
char") in nco_netcdf.c and nco.h. Previously, there were a mixture
- of "char" and "unsigned char" occurances.
+ of "char" and "unsigned char" occurances.
Not sure if this helps anything except consistency
* Removed two of three critical regions in nco_var_utl.c
@@ -8764,14 +9095,14 @@
2005-06-22 Charlie Zender <zender at uci.edu>
* Fix bld/Makefile indent that caused make to treat ncap: as
- command not rule
+ command not rule
2005-06-21 Charlie Zender <zender at uci.edu>
* Make LINUX_CC more MPI-friendly for both gcc and icc
'make MPI=Y' just works on my Debian machines now when
MPICH_CC=gcc and fails when MPICH_CC=icc
-
+
* Set OMP=N when MPI=Y in bld/Makefile
* Add ${MDL_BIN_TRG} to .PHONY in bld/Makefile to solve problems
@@ -8793,14 +9124,14 @@
2005-06-20 Charlie Zender <zender at uci.edu>
- * Add sys target to bld/Makefile.
+ * Add sys target to bld/Makefile.
'make sys' installs executables in $MY_BIN_DIR to /usr/local/bin
2005-06-17 Charlie Zender <zender at uci.edu>
* Verified that nco_var_refresh() change does not introduce any
memory errors on any operator. Marking TODO nco543 as closed.
-
+
* Re-name nco_var_refresh() to nco_var_mtd_refresh() to better
describe functionality (metadata, not data, is refreshed).
@@ -8811,12 +9142,12 @@
Hence back out previous fix for nco543 and handle this way
This is cleaner and more robust to varying variable types with
each input file
-
- * Revert ncra input variable structure to unpacked type at end of
+
+ * Revert ncra input variable structure to unpacked type at end of
record loop
Reverting input values is not necessary since those are free()d next
- However, type member of structure must be unpacked value so that
- cast of new missing_value in nco_mss_val_get() in next
+ However, type member of structure must be unpacked value so that
+ cast of new missing_value in nco_mss_val_get() in next
nco_var_refresh() call (i.e., next file)
This solves TODO nco543 but will break when variables are different
unpacked types between files and both files contain missing values.
@@ -8826,31 +9157,31 @@
2005-06-17 Harry Mangalam <hjm at tacgi.com>
- * Tested NCO with new (3.5.1) version of DAP/NC-DAP, with netcdf 3.6.
- Seems to work for small transfers but hangs with large transfers
- from sand's DODS server. Still testing.
- Brought configure and Makefile and .in's up to date with new DAP.
+ * Tested NCO with new (3.5.1) version of DAP/NC-DAP, with netcdf 3.6.
+ Seems to work for small transfers but hangs with large transfers
+ from sand's DODS server. Still testing.
+ Brought configure and Makefile and .in's up to date with new DAP.
May have to drop back to netcdf 3.5 tho.
2005-06-17 Gayathri Venkitachalam <gvenkita at uci.edu>
- * Cleaned up mpncflint
-
+ * Cleaned up mpncflint
+
2005-06-17 Charlie Zender <zender at uci.edu>
* Convert var_prc[idx]->mss_val back to on-disk type after every
- record _except_ the last record in ncra.
+ record _except_ the last record in ncra.
This fixes valgrind memory error associated with TODO nco543
Regression test still not passed, though no new regressions introduced
2005-06-16 Charlie Zender <zender at uci.edu>
* Added ncea regression test similar to current failing ncra TODO nco543
-
+
* Remove call to nco_typ_cnv_rth() for var_prc[idx] in ncra and ncea
Call appears redundant since variable is converted to output
type with nco_var_cnf_typ() two lines later anyway.
- Removing nco_typ_cnv_rth() for var_prc[idx] causes no new failures
+ Removing nco_typ_cnv_rth() for var_prc[idx] causes no new failures
in regression tests.
* Set default packing policy for all potential MPI ncpdq operators
@@ -8858,9 +9189,9 @@
2005-06-16 Gayathri Venkitachalam <gvenkita at uci.edu>
* Added new operators mpncwa, mpncpdq, mpncecat
-
+
* Modified mpncbo so that all processes do the final clean-up
-
+
* Modified nco_ctl.c and nco_pck.c to accommodate new MPI operators
2005-06-15 Gayathri Venkitachalam <gvenkita at uci.edu>
@@ -8871,8 +9202,8 @@
2005-06-15 Harry Mangalam <hjm at tacgi.com>
- * MD5 version of nco_bm.pl checked in - works on SV (Single Values) on
- x86-32, x86-64, esmf. Passes benchmarks on all these platforms.
+ * MD5 version of nco_bm.pl checked in - works on SV (Single Values) on
+ x86-32, x86-64, esmf. Passes benchmarks on all these platforms.
on x86-32, passes all regressions except for funny-wrap-on-Intel regression,
passes all MD5 & WC tests for regression (except noted above)
passes all benchmarks with MD5, WC, SV
@@ -8900,17 +9231,17 @@
* nco_bm.pl and nco_bm.sh appear to work with loadleveler
Solution is not general yet because unable to pass environment
variables (except DATA and HOME) through scripts for now
-
+
* nco_bm.sh: Never pass strings with whitespace through Perl Getopt
* nco_bm.pl: Print many arguments when dbg_lvl=1
2005-06-12 Charlie Zender <zender at uci.edu>
- * Noticed that regression tests in nco_bm.pl report some
- apparent successes as failures on SUNMP, e.g.,
+ * Noticed that regression tests in nco_bm.pl report some
+ apparent successes as failures on SUNMP, e.g.,
Result: [1e+36] != Expected: [1e+36]
- always recorded as failure.
+ always recorded as failure.
Seems like any "Expected's" containing "+" string may fail.
Perl problem?
@@ -8918,7 +9249,7 @@
(esmf). Noted that file creation is sickeningly slow on laptop and
desktop, takes thousands of seconds. Fast on ESMF. Same on
benchmarks: very slow on laptop and desktop, fast on ESMF
- interactive node.
+ interactive node.
* Add -t thr_nbr to nco_usg_prn() and nco.texi for newly threaded
operators
@@ -8934,31 +9265,31 @@
3. intel icc compatibility 4. Improved benchmarking
* Simplify treatment of math symbol table
- C99 mandates support for
+ C99 mandates support for
erf(), erfc(),tgamma(), acosh(), asinh(), atanh(), cosh(), sinh(), tanh()
Some OS's, like Linux, Solaris, provide these without C99.
Many others (AIX, SGI*, WIN32) do not.
Complicating things, many C99 implementations, e.g., AIX xlc, do
not yet support these functions.
Hence, ncap only supports them on Linux machines.
-
+
2005-06-09 Charlie Zender <zender at uci.edu>
* Change default AMD64 compiler to gcc-4.0
- * Revert patches to known working state (i.e., make reads critical)
-
+ * Revert patches to known working state (i.e., make reads critical)
+
* Temporarily un-revert critical region patches in nco_var_get.c
- With icc and xlc_r, this causes variable numbers of ncra and ncwa
+ With icc and xlc_r, this causes variable numbers of ncra and ncwa
regressions. Usually many more ncra than ncwa.
icc/valgrind combination gives capability to narrow down causes.
-
+
2005-06-08 Charlie Zender <zender at uci.edu>
* Change thr_nbr_max_fsh from 1 to 2 for ncrcat
* Change thr_nbr_max_fsh from unlimited to 2 for ncecat
-
+
* Change thr_nbr_max_fsh from 1 to unlimited for ncwa
* Change thr_nbr_max_fsh from 4 to unlimited for ncbo
@@ -8969,7 +9300,7 @@
All operator appear memory clean in NCO portions except ncwa
ncwa may have a few unfree()d buffers but hard to tell with
valgrind version 2.2 which does not have good tracebacks.
- Threading library has plenty of unfree'd memory which apparently
+ Threading library has plenty of unfree'd memory which apparently
is harmless and there's nothing to be done about that anyway.
* ncbo memory problems disappeared
@@ -8986,13 +9317,13 @@
* Change DO_CONFORM_MSK,DO_CONFORM_WGT from private to
firstprivate and make sure both always have default values
This fixed all ncwa regressions with threads!
-
+
* icc-compiled version passes regression test perfectly on soot
only when threading is disabled at compile time, e.g., OMP=N.
With threading enabled, code fails many tests (1 ncra and 22 ncwa)
....regardless of thread number! Not requesting any threads,
(i.e., -t 0 or no -t specification), requesting one thread (-t 1),
- or requesting more threads breaks regression tests.
+ or requesting more threads breaks regression tests.
Interesting that AIX version passes all, and icc fails many,
regressions when threading enabled with one thread.
@@ -9002,7 +9333,7 @@
icc will help to isolate any problems because it is so much more
sensitive than xlc_r. Moreover, valgrind appears to work fine
with icc-compiled OpenMP code on Xeon.
-
+
* Code compiles as clean as possible with icc 8.1 and gcc 4.0
* Prohibit double definition of cmp_nm with icc
@@ -9030,14 +9361,14 @@
* Noticed that many ncra regression tests fail on AIX
When did this begin? What causes it?
- Results from date-stamped-version tests
- 20050605: Fail;
- 20050524: Fail;
- 20050521: Fail;
+ Results from date-stamped-version tests
+ 20050605: Fail;
+ 20050524: Fail;
+ 20050521: Fail;
20050520: Fail;
20050519: Succeed;
- 20050517: Succeed;
- 20050510: Succeed;
+ 20050517: Succeed;
+ 20050510: Succeed;
2005-06-06 Charlie Zender <zender at uci.edu>
@@ -9049,7 +9380,7 @@
Note that tgamma() is a C99 feature
Referencing tgamma() in the code is the second C99 feature,
after the restrict type keyword.
-
+
2005-06-05 Charlie Zender <zender at uci.edu>
* gamma() function appears broken in ncap regression test 07
@@ -9059,9 +9390,9 @@
2005-06-02 Charlie Zender <zender at uci.edu>
- * Henry implemented ncap exponentiation bugfix.
+ * Henry implemented ncap exponentiation bugfix.
Versions < 3.0.1 incorrectly handle exponentiation of a variable
- to a variable power (V^V).
+ to a variable power (V^V).
2005-05-29 Charlie Zender <zender at uci.edu>
@@ -9072,14 +9403,14 @@
* ncks appears to be memory-pure!
- * Leak-proofed nco_msa.c
+ * Leak-proofed nco_msa.c
2005-05-26 Hary Mangalam <hjm at tacgi.com>
* finally brought in ncecat in OMP form
* changed configure.in configure scripts to reflect sync with
- bld/Makefile flags; (again) noted problem with static/shared and
+ bld/Makefile flags; (again) noted problem with static/shared and
DODS in configure.eg
* accepted CZ's peculiar variable naming in bm script.
@@ -9140,7 +9471,7 @@
critical to non-critical. Not sure why it was originally
critical.
- * Make nco_var_refresh() routine from SMP non-critical.
+ * Make nco_var_refresh() routine from SMP non-critical.
Not sure why it was originally critical.
2005-05-18 Charlie Zender <zender at uci.edu>
@@ -9167,7 +9498,7 @@
* Add cleanup_and_exit branch to nco_var_avg()
* Never allocate tally array for var_prc[idx] in ncwa, since it is
- never used and caused double free() problems when it share the
+ never used and caused double free() problems when it share the
var_prc_out[idx] tally buffer
2005-05-16 Charlie Zender <zender at uci.edu>
@@ -9184,7 +9515,7 @@
2005-05-06 Henry Butowsky <henryb at ntlworld>
- * Cleaned up double parsing in ncap.c,ncap_*.[hc]
+ * Cleaned up double parsing in ncap.c,ncap_*.[hc]
now passes basic tests
2005-05-05 Charlie Zender <zender at uci.edu>
@@ -9246,20 +9577,20 @@
added Failure column to summary output to make it easier to see which
ones failed.
- * added nco commandline to UDP report so can verify timing exactly.
+ * added nco commandline to UDP report so can verify timing exactly.
* added --thr_nbr to option list to set # of threads to use (not
implemented internally yet tho)
* finished adding those benchmarks that CZ wants added:
- 1 - ncwa averaging all variables to scalars
+ 1 - ncwa averaging all variables to scalars
2 - ncra time-averaging 2^5 (i.e., one month) files (using symlinks)
- 3 - ncea averaging 2^5 files
+ 3 - ncea averaging 2^5 files
4 - ncbo differencing two files (using '-' as operator)
5 - DEFERRED (Martin Schultz multi-slabbing test)
- 6 - ncap long algebraic operation
- 7 - ncpdq packing the file
- 8 - ncpdq dimension-order reversal the file
+ 6 - ncap long algebraic operation
+ 7 - ncpdq packing the file
+ 8 - ncpdq dimension-order reversal the file
* above benchmarks complete cleanly on sand and on those that can be done
on bodi
@@ -9270,7 +9601,7 @@
gives apparently correct results on my laptop with default run.
However, mpncbo exits with errors when hyperslabs are specified,
e.g., mpncbo -d lon,1 ...
-
+
* Synchronize mpncbo memory clean-up with latest ncbo
* Fix lmt handling in mpncbo as per 20050416 changes
@@ -9289,7 +9620,7 @@
* Checked in mpncbo.c & nco_att_utl.c after updating them to
compile with MPI=Y. Compiling with MPI=N still behaves the way it
used to.
-
+
2005-04-18 Charlie Zender <zender at uci.edu>
* Memory status:
@@ -9298,7 +9629,7 @@
code, i.e., broadcasting. ncwa highlights these problems.
ncbo, ncea, ncflint, ncpdq, ncra, ncrcat are either memory-clean
or causes of problems are known and await resolution.
- ncecat has yet to be examined but is expected to respond well to
+ ncecat has yet to be examined but is expected to respond well to
same treatment given to ncea/ncra/ncrcat.
Problem #1: Promotion of char->double (and byte->double?) uses
@@ -9308,25 +9639,25 @@
intrinsically ill-defined and rarely used. It would be helpful
to document this problem in the manual, and possibly give users
some control over code paths, e.g.,
- --disable_promote_char_double.
+ --disable_promote_char_double.
Problem #2: nco_var_cnf_dmn(), in its various incarnations and
- uses, leaks worse than Harry's roof.
+ uses, leaks worse than Harry's roof.
The upside is that it is memory-efficient and fast.
This problem is serious and needs careful fixes.
Problem #3: ncap. I have not examined ncap since fixing the huge
ncap_var_stretch() leak. There seem to be many tiny leaks
in the flex and bison-generated code, which surprises me.
- If these really are leaks, not sure what we can do beyond
- creating a valgrind suppression file for them.
-
+ If these really are leaks, not sure what we can do beyond
+ creating a valgrind suppression file for them.
+
2005-04-17 Charlie Zender <zender at uci.edu>
* Clean up leaks in file name code when abbreviation lists used
Solving leak in nco_fl_nm_prs() was rather contorted but appears
to work
-
+
* Fix off-by-two error in memmove() in ncwa
2005-04-16 Charlie Zender <zender at uci.edu>
@@ -9338,13 +9669,13 @@
for averaging
* Tighten up memory in ncwa by free()ing dimension lists
-
+
* Changed limit (lmt) memory paradigm from 1D to 2D structure list
in accord with all string, variable, and dimension lists.
This makes handling limits easier, at the expense of more indirect
referencing in metadata routines. Replace lmt[idx]. with lmt[idx]->
All lmt-related memory leaks appear to be gone
-
+
2005-04-15 Charlie Zender <zender at uci.edu>
* Gayathri noted problem with missing_value inconsistency between
@@ -9363,7 +9694,7 @@
memory problems...
* Fixed AIX regression for printing bytes by moving from
- non-standard %hhi format (which printed all bytes as "hi" on AIX)
+ non-standard %hhi format (which printed all bytes as "hi" on AIX)
to standard %c format, which is lame and does not print signed
integer values for bytes. Now it should not trigger regressions.
@@ -9371,7 +9702,7 @@
Builds only with bld/Makefile using make MPI=Y switch
and requires MPI packages (e.g., mpich) and access to mpi.h
Has not been verified not to break autotools builds yet
-
+
2005-04-13 Charlie Zender <zender at uci.edu>
* Fixed all memory leaks in simplest ncbo calls
@@ -9397,19 +9728,19 @@
Clear that limit structures will need some deep work
Genuine memory errors do occur and give hope that ultimately
ridding all ncwa problems may be possible by fixing leaks
-
+
* Implement preliminary memory free routines in ncap and
immediately give up due to size and scope of job
* Move list free functions to respective utility routine files
* Changed names of ncap routines that maniputlated nm_id structures
- These routines used the *_var_* nomenclature, e.g., nco_var_lst_free(),
+ These routines used the *_var_* nomenclature, e.g., nco_var_lst_free(),
even though they manipulated lists of nm_id_sct structures.
Changed *_var_* to *_nm_id_* in these functions so that routines
are named after structure types which they manipulate, rather than
what their contents are
-
+
* Created new routines to free lists of lmt, dmn, var structures
* ncpdq is officially leak-free! The first leak-free operator
@@ -9419,7 +9750,7 @@
* Fixed bug in nco_var_cnf_dmn() and nco_var_stretch() where
var->nm pointer was being copied instead of deep-copying
This appears to have fixed ncwa regression TODO nco490
-
+
* Verified that var->nm freeing is last obstacle to perfect memory
releases in ncpdq
@@ -9471,7 +9802,7 @@
* Deep-copy nm in nco_var_dpl(); free nm in nco_var_free()
Ditto with dmn->nm, nco_dmn_dpl(), and nco_dmn_free()
-
+
* Implement nco_dmn_free() to free dimensions
* Guaranteed system memory (optarg) reaches no further than
@@ -9479,11 +9810,11 @@
of temporarily increasing un-free'd memory in programs, because,
formerly, valgrind would not count that memory against NCO because
it was system memory (optarg). Now NCO owns it and needs to free
- it.
+ it.
* Planning to eliminate all remaining memory leaks from NCO
Un-free'd strings cause the most memory leaks (I think)
- When NCO originated in 1993-1994 I was zealous about memory usage.
+ When NCO originated in 1993-1994 I was zealous about memory usage.
I chose to use the system memory allocated to optarg rather than
duplicate that memory in NCO. As NCO grew and became more
object-oriented, being able to create structures (e.g., variables)
@@ -9499,16 +9830,16 @@
those strings are not duplicated much or contained in structures
and so never lead to situations that valgrind count against NCO
Using system memory for var_lst_in, however, causes problems
-
+
Strategy:
1. Replace all such fragments in NCO by strdup()'d memory
2. Follow their code paths and free() these strings when possible
- 3. Add block to free all pointers at end of code (already in ncpdq)
+ 3. Add block to free all pointers at end of code (already in ncpdq)
4. Modify destructors (e.g., nco_var_free()) to free strings
-
+
Initial work to free memory will be conducted in ncpdq
Implement same methods in other operators once ncpdq is leak-free...
-
+
2005-03-25 charlie <zender at uci.edu>
* Documented and fixed some small ncap memory leaks with valgrind
@@ -9586,7 +9917,7 @@
2005-03-02 Harry Mangalam <hjm at tacgi.com>
* RE-Fixed configure, configure.in to find nc-dods lib
- AND also to treat UDUnits correctly if it's built and used from
+ AND also to treat UDUnits correctly if it's built and used from
a local directory.
2005-02-24 Harry Mangalam <hjm at tacgi.com>
@@ -9615,7 +9946,7 @@
* added udp reporting "
* more debugging for "
* cleaned up and strictified code
-
+
2005-02-10 Harry Mangalam <hjm at tacgi.com>
* added the getopt & usage section to test script bld/nco_tst.pl
@@ -9641,7 +9972,7 @@
2005-01-09 Charlie Zender <zender at uci.edu>
* Make ncks -q switch a true quiet switch that stops all printing
- to screen. Make new -Q switch handle old -q job.
+ to screen. Make new -Q switch handle old -q job.
Make ncks -R automatically invoke -q so that remote files may
be downloaded without attempting to print them.
@@ -9650,7 +9981,7 @@
* Fixed g++-3.4.2 prototype warnings with nco_c++
* Added return to about five void functions to squelch erroneous
- gcc-3.4.2 warnings (and hopefully allow enable-custom-* to work)
+ gcc-3.4.2 warnings (and hopefully allow enable-custom-* to work)
2004-11-30 Charlie Zender <zender at uci.edu>
@@ -9726,12 +10057,12 @@
* Verified packing/unpacking for: NC_INT->NC_SHORT,
NC_DOUBLE->NC_INT, NC_DOUBLE->NC_BYTE, NC_INT->NC_BYTE,
- NC_SHORT->NC_BYTE,
+ NC_SHORT->NC_BYTE,
* Allow add_offset, scale_factor to be any type but NC_BYTE and
NC_CHAR in nco_pck_dsk_inq(). This fixes NC_INT->NC_SHORT unpacking.
- * Learned that NC_INT->NC_SHORT does not work.
+ * Learned that NC_INT->NC_SHORT does not work.
Presumably all non-floating point packing is suspect until verified
* Verified each pack map works without memory problems for all_new policy
@@ -9749,7 +10080,7 @@
* Deprecated nco_is_packable() in favor of more flexible
nco_pck_plc_typ_get() which accounts for policy desired by nco_pck_map
- * Eliminated all memory problems in ncpdq
+ * Eliminated all memory problems in ncpdq
Verified no excess large blocks remain at program end
Valgrind rules!
@@ -9765,7 +10096,7 @@
* Create nco_pck_map_get() to parse nco_pck_map arguments to ncpdq -M option
- * Introduce nco_pck_map to nco_typ_pck_get()
+ * Introduce nco_pck_map to nco_typ_pck_get()
Only default type nco_pck_map_hgh_sht currently works
* Move high level packing routines from ncpdq.c to nco_pck.c
@@ -9801,7 +10132,7 @@
2004-09-02 Charlie Zender <zender at uci.edu>
- * Finished implementing packing types: all_new, all_xst, upk
+ * Finished implementing packing types: all_new, all_xst, upk
2004-09-01 Charlie Zender <zender at uci.edu>
@@ -9868,7 +10199,7 @@
All tests appear to work
* Fixed last known ncpdq problem caused by indexing var_prc_out
- list with var_out index
+ list with var_out index
* Added duplicate dimension flag has_dpl_dmn to var_sct
@@ -9908,13 +10239,13 @@
* Changed dimension re-order switch from -z to -a like ncwa
* Fixed NCO-wide bug where I used strstr(sng1,sng2) as boolean
- instead of !strcmp(sng1,sng2)
+ instead of !strcmp(sng1,sng2)
This bug occurred in:
nco_var_cnf_dmn() three times
nco_var_stretch() three times
ncbo.c() once time
When used as a boolean strstr(sng1,sng2) is approximately
- interchangeable with !strcmp(sng1,sng2).
+ interchangeable with !strcmp(sng1,sng2).
Exceptions occur where sng1 is a substring of sng2, in which case
the dimensions would be different but strstr() would return a match.
In all locations, the bug appears to have caused extra work, or to
@@ -9927,7 +10258,7 @@
* Eliminate ostensibly wrong memmove() in ncwa/ncpdq avg/rdr list processing
* Rewrote appropriate ncpdq routines to handles record dimension
- re-definitions correctly
+ re-definitions correctly
2004-07-28 Charlie Zender <zender at uci.edu>
@@ -9943,7 +10274,7 @@
* Added ncpdq to autoconf build machinery
- * Finish first theoretically working version of ncpdq.
+ * Finish first theoretically working version of ncpdq.
Of course, it crashes.
2004-07-27 Charlie Zender <zender at uci.edu>
@@ -9976,7 +10307,7 @@
2004-07-21 Charlie Zender <zender at uci.edu>
* Implement infrastructure for dimension re-ordering routine
- nco_var_dmn_rdr()
+ nco_var_dmn_rdr()
2004-07-19 Charlie Zender <zender at uci.edu>
@@ -9985,7 +10316,7 @@
* Implement preprocessor method in nco.h to disable restrict
* big.nc "restrict" test with yields incorrect answers with AIX xlc
-
+
* Implement restrict in nco_var_cnf_dmn()
* Change default xlc from -qlanglvl=extended to -qlanglvl=extc99
@@ -10011,7 +10342,7 @@
2004-07-06 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-2_9_7
- Changes since nco-2_9_6: Read MFO input files from stdin, add
+ Changes since nco-2_9_6: Read MFO input files from stdin, add
more attribute functionality to nco_c++, turn threading on in ncra
* Updated Makefile to use sophisticated make depends rules that
@@ -10024,7 +10355,7 @@
* Finished replacing %zu's with %lu's with casts to (unsigned long)
* Provide definitions of fabsf(), sqrtf() in nco_var_rth.c from
- nco_flt_rth.h rather than from special #ifdefs
+ nco_flt_rth.h rather than from special #ifdefs
2004-07-04 Charlie Zender <zender at uci.edu>
@@ -10043,7 +10374,7 @@
2004-07-01 Charlie Zender <zender at uci.edu>
* Changed configure.eg to enable OpenMP on AIX. 'make' and 'make
- install' now work but 'make test' fails with zillions of linker errors:
+ install' now work but 'make test' fails with zillions of linker errors:
rtld: 0712-001 Symbol omp_get_num_threads was referenced
from module /u/zender/nco/src/nco/.libs/libnco.so(), but a runtime definition
@@ -10056,9 +10387,9 @@
I think nco_c++ used to need this to find <valarray>, but that no
longer seems to be the case. Simpler is better.
- * Improve LFS test in big.cdl.
- Created version that creates large files (> 4 GB) on small-RAM
- (< 4 GB) systems, and NCO seem OK to deal with resulting files.
+ * Improve LFS test in big.cdl.
+ Created version that creates large files (> 4 GB) on small-RAM
+ (< 4 GB) systems, and NCO seem OK to deal with resulting files.
* Added $dbg_lvl variable to print nco_tst.pl tests during execution
@@ -10079,7 +10410,7 @@
* Added LFS stub to nco.texi, pass LFS info from configure.in
* Added large file support LFS to custom Makefiles. Rorik added it
- to autoconf.
+ to autoconf.
2004-06-30 Charlie Zender <zender at uci.edu>
@@ -10099,12 +10430,12 @@
2004-06-28 Charlie Zender <zender at uci.edu>
- * Remove configure.in AC_CHECK_LIB check for cosf() in libC.a.
+ * Remove configure.in AC_CHECK_LIB check for cosf() in libC.a.
NCO used to get the float functions from this library but it turns
out that all of these system-supplied float functions are broken
on AIX. NCO now uses it's own version of these functions.
Fixes TODO ncap57.
-
+
2004-06-25 Charlie Zender <zender at uci.edu>
* Added ln() as synonym for log() in ncap
@@ -10197,7 +10528,7 @@
2004-06-01 Charlie Zender <zender at uci.edu>
- * nco.texi: Documented funny ncflint behavior when one variable is missing
+ * nco.texi: Documented funny ncflint behavior when one variable is missing
* Implement nco_mss_val_cnf() in ncflint to handle corner cases
where same variable has different missing values in each file
@@ -10248,7 +10579,7 @@
GCC 3.1.1 for x86-64
* Put CEWI's in nco_lmt.c to allow builds with GCC and
- --enable-*-custom when UDUnits not installed
+ --enable-*-custom when UDUnits not installed
2004-04-13 Charlie Zender <zender at uci.edu>
@@ -10285,9 +10616,9 @@
2004-03-17 Charlie Zender <zender at uci.edu>
- * Change nco_lmt.h from HAVE_UDUNITS_H to ENABLE_UDUNITS
+ * Change nco_lmt.h from HAVE_UDUNITS_H to ENABLE_UDUNITS
to make bld/Makefile builds work again when udunits is not
- installed.
+ installed.
2004-03-16 Charlie Zender <zender at uci.edu>
@@ -10295,9 +10626,9 @@
2004-03-12 Charlie Zender <zender at uci.edu>
- * Verify Solaris does autobuild correctly with up-to-date bison
+ * Verify Solaris does autobuild correctly with up-to-date bison
and when UDUnits workaround is installed.
-
+
2004-03-11 Charlie Zender <zender at uci.edu>
* Re-do UDUnits logic in configure.in to ignore broken UDUnits
@@ -10328,7 +10659,7 @@
* Added/explained OPeNDAP vs. DODS in documentation
- * Rorik modified nco_cnf_typ.c: nco_typ_cnv_rth() to fix bug with
+ * Rorik modified nco_cnf_typ.c: nco_typ_cnv_rth() to fix bug with
arithmetic on packed data in ncwa. Probably fixed same bug with
other artithmetic operators (besides ncap) as well.
@@ -10345,7 +10676,7 @@
Replace #ifndef __GNUC__ with #define FXM_NCO315 1; #ifdef FXM_NCO315
Will change back to original code only when stack memory problem
is fully understood/solved/benchmarked to improve on ANSI code branch
-
+
2004-02-10 Charlie Zender <zender at uci.edu>
* Make Convention CF-1.0 behave same as existing CSM convention
@@ -10355,7 +10686,7 @@
* Make TODO list easier to understand to facilitate contributions
* Systematically "symmetrize" all ncap arithmetic operations so
- var OP var, var OP scv, and scv OP var are handled for all operations.
+ var OP var, var OP scv, and scv OP var are handled for all operations.
* ncap handles var % scv, scv % var
@@ -10370,9 +10701,9 @@
* cvs tag -c nco-2_8_8
Changes since nco-2_8_7: --enable-[optimize/debug]-custom works
- again
+ again
- * Remove -fshort-enums from GCC switches as per Rorik.
+ * Remove -fshort-enums from GCC switches as per Rorik.
It breaks ABI and caused mysterious failures because libnetcdf.a
must be compiled with same size enums as NCO apparently.
@@ -10382,7 +10713,7 @@
2004-01-19 Charlie Zender <zender at uci.edu>
- * Use valgrind 2.1 to identify and fix small leaks:
+ * Use valgrind 2.1 to identify and fix small leaks:
Free prg_nm in nco_exit_gracefully()
2004-01-16 Charlie Zender <zender at uci.edu>
@@ -10405,7 +10736,7 @@
ncap packing works again
* Fix GCC compiles when enable-*-custom is not specified. This
- should fix reported Cygwin build problem.
+ should fix reported Cygwin build problem.
* nco_pck() uses tally-free arithmetic. Fixes ncap packing
bug introduced in 2.8.4.
@@ -10414,7 +10745,7 @@
* Only manually prototype lexer function in ncap_lex.l if
enable-*-custom build option specified with GCC.
- Fixes build problems with cygwin
+ Fixes build problems with cygwin
* Document make install-strip in doc/README as per Rorik
@@ -10438,7 +10769,7 @@
of that file unit. Unlikely that this caused problems since no
known casts were employed in prototypes. This demonstrates the
usefulness of -Werror. Without it, this bug would still be there.
-
+
2004-01-10 Charlie Zender <zender at uci.edu>
* Conjoin setting GCC flags in configure.in, avoid duplication
@@ -10458,7 +10789,7 @@
* Give DODS example in -R documentation
- * Add -R to correct -R examples in documentation
+ * Add -R to correct -R examples in documentation
2004-01-07 Charlie Zender <zender at uci.edu>
@@ -10552,7 +10883,7 @@
2003-12-01 Charlie Zender <zender at uci.edu>
* Document hyperslab bug in 2.7.3--2.8.3 on homepage
-
+
* Document NCAR SCD TCG support on homepage
2003-11-26 Charlie Zender <zender at uci.edu>
@@ -10573,7 +10904,7 @@
* Rorik fixed index-based hyperslabbing bug introduced in 2.7.3
Fixes TODO #286, #289
- * Specify success correctly for ncap T42 test
+ * Specify success correctly for ncap T42 test
2003-11-24 Charlie Zender <zender at uci.edu>
@@ -10728,7 +11059,7 @@
2003-08-14 Henry Butowsky <henryb at ntlworld.com>
- * Added wildcarding of variables to ncks
+ * Added wildcarding of variables to ncks
2003-08-13 Charlie Zender <zender at uci.edu>
@@ -10753,7 +11084,7 @@
* All regressions due to introduction of ncbnr appear to be fixed
- * Correct nco_tst.sh procedure for ncap
+ * Correct nco_tst.sh procedure for ncap
* Restore nco_op_avg inadvertently removed from nco_op_typ_get()
@@ -10784,7 +11115,7 @@
2003-07-06 Charlie Zender <zender at uci.edu>
* Removed FTP requirement from make tst. Create nco_tst.sh creates
- foo.nc from scratch without needing to FTP nco_tst.nc.
+ foo.nc from scratch without needing to FTP nco_tst.nc.
Test involving FTP is now called make tst_ftp.
2003-07-04 Charlie Zender <zender at uci.edu>
@@ -10803,7 +11134,7 @@
2003-06-23 Charlie Zender <zender at uci.edu>
* Rorik fixed UDUnits handling of hyperslab specifications in
- floating point format, e.g., 1.23e-7.
+ floating point format, e.g., 1.23e-7.
2003-06-15 Charlie Zender <zender at uci.edu>
@@ -10814,9 +11145,9 @@
* Clean up some MSA namespace
* Document supported non-ANSI functions (e.g., acosh(), trunc())
- in nco.texi
+ in nco.texi
- * Changed --nocoords to --no-coord or --no-crd.
+ * Changed --nocoords to --no-coord or --no-crd.
Decided all disabling actions will have same keyword as enabling
action except switch will start with --no-XXX
@@ -10949,7 +11280,7 @@
2003-01-19 Charlie Zender <zender at uci.edu>
* Fix inconsistent storing of fixed variables that are packed in ncap
- Packed values were being saved in unpacked type without packing attributes
+ Packed values were being saved in unpacked type without packing attributes
2003-01-18 Charlie Zender <zender at uci.edu>
@@ -10963,7 +11294,7 @@
2003-01-08 Charlie Zender <zender at uci.edu>
- * Rorik added conditional compilation of Sittler's getopt_long()
+ * Rorik added conditional compilation of Sittler's getopt_long()
where necessary, removed *_GETOPT_LONG tokens from all source code.
2003-01-03 Charlie Zender <zender at uci.edu>
@@ -10974,7 +11305,7 @@
be tested on all of these machines. My first test with a new
architecture, HP-UX (HPPA), failed because of lack of C++
compiler. Thus Testdrive computers do not appear to be fully
- loaded with reliable compilers.
+ loaded with reliable compilers.
2003-01-02 Charlie Zender <zender at uci.edu>
@@ -11105,7 +11436,7 @@
2002-09-09 Charlie Zender <zender at uci.edu>
* Added preliminary MACOSX support to bld/Makefile
- Everything appears to work but ncap, which has numerous problems
+ Everything appears to work but ncap, which has numerous problems
on MACOSX because of bison, float functions, and ranlib.
* Code compiles with gcc -ansi -pedantic -D_BSD_SOURCE
@@ -11139,7 +11470,7 @@
* #include <config.h> in all headers which reference strdup()
- * Crude but workable HAVE_STRCASECMP support,
+ * Crude but workable HAVE_STRCASECMP support,
include config.h headers to allow future HAVE_STRDUP handling
* Implement some Comeau support, but presence of non-ANSI
@@ -11151,7 +11482,7 @@
* Tweak CC list in configure.in, remove c89, xlc_r
* cvs tag -c nco-2_6_2
- Changes since nco-2_6_1:
+ Changes since nco-2_6_1:
Improvements to autotools builds
Initial ncap handling of user-defined dimensions
@@ -11160,10 +11491,10 @@
* Remove Fortran files nco_cal_utl.F, nco_fortran.F,
nco_fortran.h since it is unlikely anyone will step forward to
maintain fortran support. Of course these can be resurrected if
- necessary.
+ necessary.
* Add instructions for using compile farm, modify AIX, MACOSX
- builds
+ builds
2002-08-22 Charlie Zender <zender at uci.edu>
@@ -11174,7 +11505,7 @@
2002-08-21 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-2_6_1
- Changes since nco-2_6_0:
+ Changes since nco-2_6_0:
Unpacking is now supported for all arithmetic operators
* Improved regression testing in configure.eg
@@ -11186,7 +11517,7 @@
2002-08-20 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-2_6_0
- Changes since nco-2_5_6:
+ Changes since nco-2_5_6:
Unpacking support is now beta for all arithmetic operators
* Print attributes with same formatting as variables
@@ -11203,7 +11534,7 @@
5. nco_var_get() refreshes var->pck_ram on each read
6. Use nco_cnv_mss_val_typ() to keep type of missing_value in sync
Unpacking appears to be working for all arithmetic operators!
-
+
2002-08-19 Charlie Zender <zender at uci.edu>
* Added .cvsignore to dirs affected by autoconf
@@ -11232,7 +11563,7 @@
* Fixed problem in nco_cnf_typ.c which caused failure for ncra
when variable had missing_value attribute and needed to be
promoted before arithmetic (e.g., int to float). Freeing variable
- each record but leaving mss_val the promoted type resulted in
+ each record but leaving mss_val the promoted type resulted in
mss_val being overwritten (usually to value of 0.0) in all
records but first for each file. Problem was ncra-specific and
is described in more detail in header of nco_cnv_mss_val_typ_upk()
@@ -11312,7 +11643,7 @@
* Added man pages for NCO operators to man directory.
Source of man pages is Debian distribution by Brian Mays,
which automatically generates man pages from texinfo source.
- Thus man pages are moderately out of date, currently for version 2.2.0.
+ Thus man pages are moderately out of date, currently for version 2.2.0.
2002-06-15 Charlie Zender <zender at uci.edu>
@@ -11358,10 +11689,11 @@
Used ptrdiff_t instead of int where warranted.
Most of remaining warnings could be solved by using size_t instead
of int or long for counters, but mismatches are unavoidable at
- some point since type nco_long variables (i.e., netCDF data)
+ some point since type nco_long variables (i.e., netCDF data)a
needs to interact with size_t variables on occasion.
-
+
* cvs tag -c nco-2_4_4
+
* Changes since nco-2_4_3: Build system
2002-06-05 Charlie Zender <zender at uci.edu>
@@ -11413,7 +11745,7 @@
* More ncap work to prepare for dimension list structures
which are going to be implemented correctly by tokenizing
each element of dimension list and assembling full list in
- parser and letting scanner pass in each token.
+ parser and letting scanner pass in each token.
2002-05-18 Charlie Zender <zender at uci.edu>
@@ -11432,7 +11764,7 @@
* cvs tag -c nco-2_4_0
Changes since nco-2_3_1: Builds out of box on all Unices
-
+
* Surround fabsf and fmodf prototypes with ifndef __GNUG__
since g++ linking fails when prototypes explicitly specified
in header _and_ in function. This is a kludge to a kludge
@@ -11442,7 +11774,7 @@
as long as cc compiler, not xlc or xlC, is used. Prototype
warnings similar to gcc prototype warnings can be ignored.
All major platforms are once again working out of the box.
-
+
2002-05-11 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-2_3_1
@@ -11518,7 +11850,7 @@
2002-04-18 Charlie Zender <zender at uci.edu>
* cvs tag -c nco-2_2_2
- Changes since nco-2_2_1: fix rare ncwa weight bug
+ Changes since nco-2_2_1: fix rare ncwa weight bug
* make tst gets test file from dust.ps.uci.edu rather than CGD
@@ -11532,7 +11864,7 @@
2002-04-02 Charlie Zender <zender at uci.edu>
- * Switch back to using pure_parser to prevent Linux core dumps on
+ * Switch back to using pure_parser to prevent Linux core dumps on
2002-03-30 Charlie Zender <zender at uci.edu>
@@ -11556,7 +11888,7 @@
* Removed ncap_lex.c ncap.tab.c ncap.tab.h because they are not
portable across platforms so it is best to let these be generated
- on user's machine until portable x-platform versions can be
+ on user's machine until portable x-platform versions can be
generated. Immediate problem is that IRIX and Linux versions
are interfering with eachother.
@@ -11569,9 +11901,9 @@
2002-02-11 Charlie Zender <zender at uci.edu>
* Remove ncap dependency on getopt.o, getopt1.o since
- getopt_long() is not currently used (but using it is on
+ getopt_long() is not currently used (but using it is on
the TODO list). Re-implementing getopt_long() will be done
- eventually, but now just make ncap easier to build to facilitate
+ eventually, but now just make ncap easier to build to facilitate
more beta testing.
2002-02-04 Charlie Zender <zender at uci.edu>
@@ -11605,7 +11937,7 @@
* cvs tag -c nco-2_1_3
Changes since nco-2_1_2: LHS casting really works as long as
dimensions are already in output file. Replaced var_add() in ncap,
- no known parser bugs, just missing features.
+ no known parser bugs, just missing features.
* Created var_add_no_tally() by copying var_subtract() and
changing minuses to pluses. This routine does not use tally,
@@ -11635,7 +11967,7 @@
* LHS casting is semi-working, semi-broken. Seems to work when all
required dimensions are already in input file and RHS is variable,
not attribute. Thus a3[lat,lon,lev] = one works but
- a3[lat,lon,lev]=1.0 does not.
+ a3[lat,lon,lev]=1.0 does not.
Still thinking about how to stretch attributes.
2002-01-27 Charlie Zender <zender at uci.edu>
@@ -11657,7 +11989,7 @@
solved all IRIX cc warnings for ncap too. Since unsigned char
pointer and char pointer are same size, there should be no problem
casting between them. However, casting between unsigned char value
- and char value could change answers.
+ and char value could change answers.
String operations should be checked to ensure they still work.
2002-01-23 Charlie Zender <zender at uci.edu>
@@ -11675,11 +12007,11 @@
* Remove templates for math functions from ncap.c
- * Implement CCOMMENT start state to recognize C comments /* */
+ * Implement CCOMMENT start state to recognize C comments /* */
* Explicitly declare yy_scan_string() to remove compiler warnings
- * Implement/use nco_set_fill() wrapper
+ * Implement/use nco_set_fill() wrapper
Remove architecture-dependent wrapper on usage
Pass pointer to valid fll_md_old since NULL is not safe
because nc_set_fill() may try to write to it
@@ -11695,7 +12027,7 @@
* Changed Makefile default to OMP=N until further testing
* Began implementation of lexer for subscripted variables
- with x[dmn1,dmn2,...dmnN] syntax. Currently creates list of
+ with x[dmn1,dmn2,...dmnN] syntax. Currently creates list of
dimension structures but does nothing with it.
2002-01-13 Charlie Zender <zender at uci.edu>
@@ -11703,13 +12035,13 @@
* Verified ncap script gives same answers as odxc.ncl script
* var_free() superceded variable in ncap_var_conform_dim()
- causes core dump (why?), but not free'ing must cause memory leak
+ causes core dump (why?), but not free'ing must cause memory leak
* Realized var_conform_dim() has bug of omission: does not abort
when variables do not conform because dimension list of one is
subset of other but ORDER of dimensions differs, e.g.,
- a(lat,lev,lon) !~ b(lon,lev).
- NCO probably returns incorrect answers silently in this case!
+ a(lat,lev,lon) !~ b(lon,lev).
+ NCO probably returns incorrect answers silently in this case!
2002-01-12 Charlie Zender <zender at uci.edu>
diff --git a/doc/MANIFEST b/doc/MANIFEST
index de4f6b2..24ec183 100644
--- a/doc/MANIFEST
+++ b/doc/MANIFEST
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/MANIFEST,v 1.74 2015/01/07 18:05:50 zender Exp $ -*-text-*-
+$Header$ -*-text-*-
This file enumerates the files in the NCO distribution and, where
appropriate, describes the purpose of the file.
@@ -79,6 +79,7 @@ nco/data/Makefile.am Automake instructions
nco/data/Makefile.in(v) Autotools-generated Makefile
nco/data/big.cdl CDL file to test huge netCDF files
nco/data/bin_cnt.nco ncap2 sample script that bins wind speeds
+nco/data/cf2.cdl CDL file to test CF group extensions
nco/data/cmip5.cdl CDL file to test ncbo functionality on groups
nco/data/cnk.cdl CDL file to test chunking
nco/data/ddra.nco Sample ncap2 script that computes DDRA statistics
@@ -272,10 +273,14 @@ nco/src/nco/nco_omp.c
nco/src/nco/nco_omp.h
nco/src/nco/nco_pck.c
nco/src/nco/nco_pck.h
+nco/src/nco/nco_ppc.c
+nco/src/nco/nco_ppc.h
nco/src/nco/nco_prn.c
nco/src/nco/nco_prn.h
nco/src/nco/nco_rec_var.c
nco/src/nco/nco_rec_var.h
+nco/src/nco/nco_rgr.c
+nco/src/nco/nco_rgr.h
nco/src/nco/nco_rth_flt.c
nco/src/nco/nco_rth_flt.h
nco/src/nco/nco_rth_utl.c
@@ -284,6 +289,8 @@ nco/src/nco/nco_scl_utl.c
nco/src/nco/nco_scl_utl.h
nco/src/nco/nco_scm.c
nco/src/nco/nco_scm.h
+nco/src/nco/nco_sld.c
+nco/src/nco/nco_sld.h
nco/src/nco/nco_sng_utl.c
nco/src/nco/nco_sng_utl.h
nco/src/nco/nco_srm.c
diff --git a/doc/Makefile.in b/doc/Makefile.in
index fe959bb..b8e88fd 100644
--- a/doc/Makefile.in
+++ b/doc/Makefile.in
@@ -212,6 +212,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/doc/README b/doc/README
index 5f2ee22..4fc50f5 100644
--- a/doc/README
+++ b/doc/README
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/README,v 1.19 2014/05/20 05:53:20 zender Exp $ -*-text-*-
+# $Header$ -*-text-*-
# Purpose: NCO README file
diff --git a/doc/TAG b/doc/TAG
index d90bda8..ebf8ab3 100644
--- a/doc/TAG
+++ b/doc/TAG
@@ -1 +1 @@
-$Name: nco-4_4_8 $
+$Name$
diff --git a/doc/TODO b/doc/TODO
index b4edd0c..04e38e3 100644
--- a/doc/TODO
+++ b/doc/TODO
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/TODO,v 1.1276 2015/02/10 01:11:40 zender Exp $
+$Header$
# Purpose: TODO items for NCO
@@ -663,7 +663,18 @@ nco1113. nco: rsp parker norton help srd slowdown issue help 20140718 completely
nco1114. ncrcat fails when single record dimension is not first dimension
nco1116. --add_bnds for creating bounds variables
nco1117. ncks human-readable times
-nco1118.
+nco1119. nco: ncap2 RNG works with arrays, fails with scalars (john 20150317)
+ ncap2 -O -s 'defdim("r1",10);data[r1]=10;data=gsl_rng_uniform_int(data);print(data);' ~/nco/data/in.nc ~/foo.nc # works
+ ncap2 -O -s 'data=10;data=gsl_rng_uniform_int(data);print(data);' ~/nco/data/in.nc ~/foo.nc # borken
+nco1120. brendan discussion 20150312 autoconf requires both --enable-netcdf4=no --and enable-netcdf-4=no to get "ENABLE_NETCDF4....... no" and avoid the "configure: Bad news: Simple program does not compile and link with netCDF4 library" message.
+nco1121. ncap2 attribute propagation occurs for re-defined input variables Christine Smit https://sourceforge.net/p/nco/discussion/9829/thread/142457da/?limit=25
+nco1122. cnk slowdown Barry McInnes 3/9
+ # Severe slowdown in record loop of nco_cpy_rec_var_val() (MM3 workaround) for cnk_sz time != 1
+ ncks -O -v huss --fl_fmt=netcdf4_classic -L 5 ${DATA}/hdf/huss_Amon_ACCESS1-0_historical_r1i1p1_185001-200512.nc ~/foo.nc # hangs
+ ncks -O -v huss --cnk_plc=r1d --fl_fmt=netcdf4_classic -L 5 ${DATA}/hdf/huss_Amon_ACCESS1-0_historical_r1i1p1_185001-200512.nc ~/foo.nc # works
+nco1123. ESGF access
+ ncks -M http://esgf-data2.ceda.ac.uk/thredds/dodsC/cmip5.output1.MOHC.HadGEM2-ES.rcp85.mon.ocean.Omon.r1i1p1.uo.20111014.aggregation.1
+nco1124.
qrk
************************************************************************
End ncoXXX TODOs
diff --git a/doc/VERSION b/doc/VERSION
index bc30b06..a84947d 100644
--- a/doc/VERSION
+++ b/doc/VERSION
@@ -1 +1 @@
-4.4.8
\ No newline at end of file
+4.5.0
diff --git a/doc/build_hints.shtml b/doc/build_hints.shtml
index 7bdd2bb..10a0e68 100644
--- a/doc/build_hints.shtml
+++ b/doc/build_hints.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/build_hints.shtml,v 1.1 2014/06/15 16:45:40 zender Exp $
+<!-- $Header$
Purpose: Build_Hints archive
diff --git a/doc/debian.txt b/doc/debian.txt
index 7026fee..4b0da01 100644
--- a/doc/debian.txt
+++ b/doc/debian.txt
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/debian.txt,v 1.206 2014/12/01 20:51:40 zender Exp $ -*-text-*-
+# $Header$ -*-text-*-
# Purpose: Debian information for NCO netCDF Operators project
# Notes describe procedure to manipulate Debian-specific distribution
@@ -29,19 +29,19 @@ apt-get install dh-make debhelper devscripts fakeroot gnupg debian-policy develo
2. Debian build procedure recommends placing entire package source in
subdirectory of main package.
- For starters, we wish to create .debs of tagged releases, e.g., nco-4.4.8
- First we create a clean source distribution of nco and place it in nco-4.4.8
- Once automated, we will use cvs co -rnco-4_4_8 to get source
+ For starters, we wish to create .debs of tagged releases, e.g., nco-4.5.0
+ First we create a clean source distribution of nco and place it in nco-4.5.0
+ Once automated, we will use cvs co -rnco-4_5_0 to get source
Until we know what is necessary, however, we just copy a snapshot
2.1 Clean all build files from development directory
cd ~/nco;make distclean;cd bld;make clean;cd ~
tar cvzf ./nco/nco.tar.gz ./nco/*
-cd ~/nco;tar xvzf nco.tar.gz;mv nco nco-4.4.8
-/bin/rm nco.tar.gz;tar cvzf nco-4.4.8.tar.gz ./nco-4.4.8/*
-cd ~/nco/nco-4.4.8
-dh_make -e zender at uci.edu -f ../nco-4.4.8.tar.gz
+cd ~/nco;tar xvzf nco.tar.gz;mv nco nco-4.5.0
+/bin/rm nco.tar.gz;tar cvzf nco-4.5.0.tar.gz ./nco-4.5.0/*
+cd ~/nco/nco-4.5.0
+dh_make -e zender at uci.edu -f ../nco-4.5.0.tar.gz
2.2 The preceding steps created template debian files for a .deb,
Those files now reside in ~/nco/debian.
@@ -56,7 +56,7 @@ dh_make -e zender at uci.edu -f ../nco-4.4.8.tar.gz
from previous build
cd ~/nco;/bin/rm *.gz
- cd ~/nco/nco-4.4.8
+ cd ~/nco/nco-4.5.0
dpkg-buildpackage -rfakeroot > foo 2>&1
dpkg-buildpackage -rsudo > foo 2>&1
@@ -85,13 +85,13 @@ patch -p0 < nco_X.Y.Z-3.diff # Patch destination with Debian diff
make tags
# Put cute version-specific string in nco_ctl.c:nco_nmn_get()
# Install correct version numbers before updating Debian
-# tags-query replace 4_4_8 with X_Y_Z+1
-# tags-query replace 4.4.8 with X.Y.Z+1
+# tags-query replace 4_5_0 with X_Y_Z+1
+# tags-query replace 4.5.0 with X.Y.Z+1
# If tags-query replace does not work, be sure to manually change
# versions in configure.ac, debian/files, doc/ANNOUNCE, doc/debian.txt,
# doc/index.shtml, doc/nco.texi, bld/nco_dst.pl, doc/VERSION
-# 20141201: Change NCO_VERSION_PATCH in src/nco.h!
- cd ~/nco/debian;dch -b --force-distribution --distribution=unstable -v 4.4.8-1 # Update changelog (-b forces this version number)
+# 20141201: Change NCO_VERSION_PATCH in src/nco.h!!!!!!!!!!!!!!!!!!!!!!
+ cd ~/nco/debian;dch -b --force-distribution --distribution=unstable -v 4.5.0-1 # Update changelog (-b forces this version number)
emacs ~/nco/bld/nco.spec # Update changelog
# For unknown reason rules file may lose its executable bit
chmod a+x ~/nco/debian/rules
@@ -99,22 +99,22 @@ patch -p0 < nco_X.Y.Z-3.diff # Patch destination with Debian diff
cd ~/nco;aclocal;autoheader;automake --foreign;autoconf
# Save all files in emacs before tagging
# Tag CVS code after changing files in ~/nco/debian
- cd ~/nco;cvs commit -m "Preparing nco-4.4.8 release";cvs tag -c nco-4_4_8
- ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_4_8
+ cd ~/nco;cvs commit -m "Preparing nco-4.5.0 release";cvs tag -c nco-4_5_0
+ ${HOME}/nco/bld/nco_dst.pl --dbg=2 --bld --cln nco-4_5_0
# Upload tarball to SF https://sourceforge.net/projects/nco/files
- cd;scp dust.ess.uci.edu:/var/www/html/nco/src/nco-4.4.8.tar.gz .
+ cd;scp dust.ess.uci.edu:/var/www/html/nco/src/nco-4.5.0.tar.gz .
7. Ubuntu PPA
https://help.launchpad.net/Packaging/PPA
-dput NCO nco_4.4.8-2~ppa1_source.changes
+dput NCO nco_4.5.0-2~ppa1_source.changes
sudo apt-key adv --recv-keys --keyserver keyserver.ubuntu.com
# Location of build diagnostics for mentors to help
-http://dust.ess.uci.edu/nco/src/nco_4.4.8-1.dpkg-buildpackage.txt
-http://dust.ess.uci.edu/nco/src/nco_4.4.8-1.dsc
-http://dust.ess.uci.edu/nco/src/nco_4.4.8-1_i386.changes
-http://dust.ess.uci.edu/nco/src/nco_4.4.8-1_i386.deb
-http://dust.ess.uci.edu/nco/src/nco_4.4.8.orig.tar.gz
+http://dust.ess.uci.edu/nco/src/nco_4.5.0-1.dpkg-buildpackage.txt
+http://dust.ess.uci.edu/nco/src/nco_4.5.0-1.dsc
+http://dust.ess.uci.edu/nco/src/nco_4.5.0-1_i386.changes
+http://dust.ess.uci.edu/nco/src/nco_4.5.0-1_i386.deb
+http://dust.ess.uci.edu/nco/src/nco_4.5.0.orig.tar.gz
# Becoming a Debian developer
http://www.debian.org/devel/join/newmaint
@@ -168,31 +168,31 @@ Matej Vela <vela at debian.org>, Daniel Baumann <daniel at debian.org>, Warren Turkal
# export LD_LIBRARY_PATH=/usr/lib:/lib:/usr/X11R6/lib
# sudo aptitude install antlr bison flex gsl-bin libgsl0-dev libantlr-dev netcdf-bin libnetcdfc7 libnetcdf-dev texinfo libcurl4-gnutls-dev libexpat1-dev libxml2-dev udunits-bin libudunits2-0 libudunits2-dev
cd ~/nco;cvc
-sudo /bin/rm -rf ${DATA}/nco-4.4.8 ${DATA}/nco_4.4.8* ${DATA}/debian # Cleanup last build. sudo necessary for removal because dpkg-buildpackage uses sudo?
-# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_8-1 -d nco-4.4.8 nco # Export based on tag
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -d nco-4.4.8 nco # Export most recent
-tar cvzf ./nco_4.4.8.orig.tar.gz --exclude='nco-4.4.8/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.8
-/bin/rm -rf ${DATA}/nco-4.4.8 # Remove cvs-exported directory
-tar xvzf ./nco_4.4.8.orig.tar.gz # Untar to get directory without excluded files
-mkdir -p ${DATA}/nco-4.4.8/debian/source;cd ~/nco/debian;/bin/cp changelog compat control convert copyright doc-base files info rules ${DATA}/nco-4.4.8/debian;cd ~/nco/debian/source;/bin/cp format ${DATA}/nco-4.4.8/debian/source # Replace debian directory with _CURRENT_ (main trunk) settings
+sudo /bin/rm -rf ${DATA}/nco-4.5.0 ${DATA}/nco_4.5.0* ${DATA}/debian # Cleanup last build. sudo necessary for removal because dpkg-buildpackage uses sudo?
+# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_5_0-1 -d nco-4.5.0 nco # Export based on tag
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -d nco-4.5.0 nco # Export most recent
+tar cvzf ./nco_4.5.0.orig.tar.gz --exclude='nco-4.5.0/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.5.0
+/bin/rm -rf ${DATA}/nco-4.5.0 # Remove cvs-exported directory
+tar xvzf ./nco_4.5.0.orig.tar.gz # Untar to get directory without excluded files
+mkdir -p ${DATA}/nco-4.5.0/debian/source;cd ~/nco/debian;/bin/cp changelog compat control convert copyright doc-base files info rules ${DATA}/nco-4.5.0/debian;cd ~/nco/debian/source;/bin/cp format ${DATA}/nco-4.5.0/debian/source # Replace debian directory with _CURRENT_ (main trunk) settings
#export DEB_BUILD_OPTIONS='disable-dap-netcdf disable-netcdf4 disable-udunits2'; # Disable optional packages based on available Debian support
-#cd ${DATA}/nco-4.4.8;dpkg-buildpackage -rsudo -uc -us > ~/foo.nco 2>&1 # -uc -us: Do not sign changes or source files
-#cd ${DATA}/nco-4.4.8;dpkg-buildpackage -rsudo -sa > ~/foo.nco 2>&1 # -sa: Include _orig.tar.gz in .changes
-cd ${DATA}/nco-4.4.8;dpkg-buildpackage -rsudo > ~/foo.nco 2>&1
+#cd ${DATA}/nco-4.5.0;dpkg-buildpackage -rsudo -uc -us > ~/foo.nco 2>&1 # -uc -us: Do not sign changes or source files
+#cd ${DATA}/nco-4.5.0;dpkg-buildpackage -rsudo -sa > ~/foo.nco 2>&1 # -sa: Include _orig.tar.gz in .changes
+cd ${DATA}/nco-4.5.0;dpkg-buildpackage -rsudo > ~/foo.nco 2>&1
sudo dpkg --remove nco
-sudo dpkg --install ${DATA}/nco_4.4.8-1_*.deb
+sudo dpkg --install ${DATA}/nco_4.5.0-1_*.deb
cd ~/nco/bld;MY_BIN_DIR=/usr/bin ../bm/nco_bm.pl --regress
# http://lintian.debian.org/full/zender@uci.edu.html
-lintian ${DATA}/nco_4.4.8-1_*.deb
-ls -l ${DATA}/nco_4.4.8*
+lintian ${DATA}/nco_4.5.0-1_*.deb
+ls -l ${DATA}/nco_4.5.0*
m ~/foo.nco
# Upload Ubuntu (rather than Debian) packages to websites
-scp ${DATA}/nco_4.4.8* dust.ess.uci.edu:/var/www/html/nco/src
-scp ${DATA}/nco_4.4.8* zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+scp ${DATA}/nco_4.5.0* dust.ess.uci.edu:/var/www/html/nco/src
+scp ${DATA}/nco_4.5.0* zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# NB: Make sure RPMs build before uploading to debian, since changing
# Debian versions is a PITA
# NB: Only upload pbuilder Debian Sid (not personal Ubuntu) .deb builds to Debian mentors
-# cd ${DATA};dupload -t mentors nco_4.4.8-1_*.changes
+# cd ${DATA};dupload -t mentors nco_4.5.0-1_*.changes
bsrc # Reset shell environment for regular development
# New build system #2
@@ -206,52 +206,52 @@ DIST=sid sudo pbuilder update # Update chroot before building package in it
# dget http://ftp.debian.org/debian/pool/main/n/nco/nco_3.9.0-1.dsc
# dget http://ftp.debian.org/debian/pool/main/n/netcdf/netcdf_3.6.1-1.dsc
# apt-get source nco # Get package source
-sudo /bin/rm /var/cache/pbuilder/result/nco_4.4.8* # Cleanup prior build
+sudo /bin/rm /var/cache/pbuilder/result/nco_4.5.0* # Cleanup prior build
# To pass DEB_BUILD_OPTIONS to pbuilder while using sudo, one must first
# modify sudoers with visudo to prevent sudo from resetting environment
#export DEB_BUILD_OPTIONS='disable-dap-netcdf disable-netcdf4 disable-udunits2'; # Disable optional packages based on available Debian support
-cd ${DATA};DIST=sid sudo pbuilder build nco_4.4.8-1.dsc > ~/foo.nco.pbuilder 2>&1
-cd /var/cache/pbuilder/result;debsign -k6F635D10 nco_4.4.8-1_*.changes
-lintian /var/cache/pbuilder/result/nco_4.4.8-1_*.deb
+cd ${DATA};DIST=sid sudo pbuilder build nco_4.5.0-1.dsc > ~/foo.nco.pbuilder 2>&1
+cd /var/cache/pbuilder/result;debsign -k6F635D10 nco_4.5.0-1_*.changes
+lintian /var/cache/pbuilder/result/nco_4.5.0-1_*.deb
sudo dpkg --remove nco
-sudo dpkg --install /var/cache/pbuilder/result/nco_4.4.8-1_*.deb
+sudo dpkg --install /var/cache/pbuilder/result/nco_4.5.0-1_*.deb
cd ~/nco/bld;MY_BIN_DIR=/usr/bin ../bm/nco_bm.pl --regress
# NB: Upload pbuilder Debian Sid packages to Debian mentors, but not
# to personal or NCO websites since most people use Ubuntu not Debian
# NB: Debian versions are a PITA, ensure RPMs build before uploading to Debian
-cd /var/cache/pbuilder/result;dupload -t mentors nco_4.4.8-1_*.changes
+cd /var/cache/pbuilder/result;dupload -t mentors nco_4.5.0-1_*.changes
# RPM builds as root
export rpm_root='/usr/src/redhat'
# export sudo_sng='' # sudo not-necessary when builing in user directories
export sudo_sng='sudo' # sudo necessary when building in system directories
cd ~/nco;cvc;cvu
-/bin/rm -rf ${DATA}/nco-4.4.8 ${DATA}/nco-4.4.8* # Cleanup last build
+/bin/rm -rf ${DATA}/nco-4.5.0 ${DATA}/nco-4.5.0* # Cleanup last build
${sudo_sng} /bin/rm -r -f \
-${rpm_root}/BUILD/nco-4.4.8 \
-${rpm_root}/RPMS/i386/nco-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.8-?.i386.rpm \
-${rpm_root}/SOURCES/nco-4.4.8.tar.gz \
-${rpm_root}/SPECS/nco-4.4.8.spec \
-${rpm_root}/SRPMS/nco-4.4.8-?.src.rpm
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_8-1 -d nco-4.4.8 nco # Export based on tag
-${sudo_sng} ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/SPECS/nco-4.4.8.spec
-tar cvzf ./nco-4.4.8.tar.gz --exclude='nco-4.4.8/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.8
-${sudo_sng} /bin/cp ${DATA}/nco-4.4.8.tar.gz ${rpm_root}/SOURCES
+${rpm_root}/BUILD/nco-4.5.0 \
+${rpm_root}/RPMS/i386/nco-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.5.0-?.i386.rpm \
+${rpm_root}/SOURCES/nco-4.5.0.tar.gz \
+${rpm_root}/SPECS/nco-4.5.0.spec \
+${rpm_root}/SRPMS/nco-4.5.0-?.src.rpm
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_5_0-1 -d nco-4.5.0 nco # Export based on tag
+${sudo_sng} ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/SPECS/nco-4.5.0.spec
+tar cvzf ./nco-4.5.0.tar.gz --exclude='nco-4.5.0/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.5.0
+${sudo_sng} /bin/cp ${DATA}/nco-4.5.0.tar.gz ${rpm_root}/SOURCES
cd ${rpm_root}/SPECS
-${sudo_sng} rpmbuild -ba --sign nco-4.4.8.spec > ~/foo.nco 2>&1
+${sudo_sng} rpmbuild -ba --sign nco-4.5.0.spec > ~/foo.nco 2>&1
scp \
-${rpm_root}/RPMS/i386/nco-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.8-?.i386.rpm \
-${rpm_root}/SRPMS/nco-4.4.8-?.src.rpm \
+${rpm_root}/RPMS/i386/nco-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.5.0-?.i386.rpm \
+${rpm_root}/SRPMS/nco-4.5.0-?.src.rpm \
dust.ess.uci.edu:/var/www/html/nco/src
scp \
-${rpm_root}/RPMS/i386/nco-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-debuginfo-4.4.8-?.i386.rpm \
-${rpm_root}/RPMS/i386/nco-devel-4.4.8-?.i386.rpm \
-${rpm_root}/SRPMS/nco-4.4.8-?.src.rpm \
+${rpm_root}/RPMS/i386/nco-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-debuginfo-4.5.0-?.i386.rpm \
+${rpm_root}/RPMS/i386/nco-devel-4.5.0-?.i386.rpm \
+${rpm_root}/SRPMS/nco-4.5.0-?.src.rpm \
zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
# RPM builds as user
@@ -260,33 +260,33 @@ zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
export rpm_root="${DATA}/rpm/nco"
#cd ~/nco;cvc;cvu # This risks committing unwanted *.[ch]pp files
mkdir -p ${DATA}/rpm/nco/TMP ${DATA}/rpm/nco/BUILD
-/bin/rm -rf ${DATA}/nco-4.4.8 ${DATA}/nco-4.4.8* # Cleanup last build
+/bin/rm -rf ${DATA}/nco-4.5.0 ${DATA}/nco-4.5.0* # Cleanup last build
/bin/rm -r -f \
-${rpm_root}/nco-4.4.8-?.src.rpm \
-${rpm_root}/nco-4.4.8.spec \
-${rpm_root}/nco-4.4.8.tar.gz \
-${rpm_root}/*/nco-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.8-?.*.rpm
-# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_4_8-1 -d nco-4.4.8 nco # Export based on tag
-cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -dnco-4.4.8 nco # Export most recent and build as 4.4.8-1
-tar cvzf ./nco-4.4.8.tar.gz --exclude='nco-4.4.8/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.4.8
-/bin/cp ${DATA}/nco-4.4.8.tar.gz ${rpm_root}
+${rpm_root}/nco-4.5.0-?.src.rpm \
+${rpm_root}/nco-4.5.0.spec \
+${rpm_root}/nco-4.5.0.tar.gz \
+${rpm_root}/*/nco-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-devel-4.5.0-?.*.rpm
+# cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -r nco-4_5_0-1 -d nco-4.5.0 nco # Export based on tag
+cd ${DATA};cvs -d zender at nco.cvs.sf.net:/cvsroot/nco export -kkv -D "1 second ago" -dnco-4.5.0 nco # Export most recent and build as 4.5.0-1
+tar cvzf ./nco-4.5.0.tar.gz --exclude='nco-4.5.0/debian*' --exclude='.cvsignore' --exclude='ncap_lex.c' --exclude='ncap_yacc.[ch]' ./nco-4.5.0
+/bin/cp ${DATA}/nco-4.5.0.tar.gz ${rpm_root}
ln -s ${HOME}/nco/bld/nco.spec ${rpm_root}/nco.spec
cd ${rpm_root}
rpmbuild -ba --sign nco.spec > ~/foo.nco 2>&1
-rpmlint ${rpm_root}/*/nco-4.4.8-?.*.rpm
+rpmlint ${rpm_root}/*/nco-4.5.0-?.*.rpm
sudo yum remove nco
-sudo yum install ${rpm_root}/*/nco-4.4.8-?.*.rpm
+sudo yum install ${rpm_root}/*/nco-4.5.0-?.*.rpm
scp \
-${rpm_root}/*/nco-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.8-?.*.rpm \
-${rpm_root}/nco-4.4.8-?.*.src.rpm \
+${rpm_root}/*/nco-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-devel-4.5.0-?.*.rpm \
+${rpm_root}/nco-4.5.0-?.*.src.rpm \
dust.ess.uci.edu:/var/www/html/nco/src
scp \
-${rpm_root}/*/nco-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-debuginfo-4.4.8-?.*.rpm \
-${rpm_root}/*/nco-devel-4.4.8-?.*.rpm \
-${rpm_root}/nco-4.4.8-?.*.src.rpm \
+${rpm_root}/*/nco-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-debuginfo-4.5.0-?.*.rpm \
+${rpm_root}/*/nco-devel-4.5.0-?.*.rpm \
+${rpm_root}/nco-4.5.0-?.*.src.rpm \
zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
diff --git a/doc/dods.sh b/doc/dods.sh
index e996371..ada41f4 100755
--- a/doc/dods.sh
+++ b/doc/dods.sh
@@ -1,6 +1,6 @@
#!/bin/sh
-# $Header: /cvsroot/nco/nco/doc/dods.sh,v 1.12 2005/07/02 22:55:39 zender Exp $
+# $Header$
# Purpose: Install DODS prior to building NCO as DODS-enabled clients
# NB: OPeNDAP/DODS netCDF client library versions 3.4.X are obsolete
diff --git a/doc/highlights_old.shtml b/doc/highlights_old.shtml
index a99af41..eadb9a3 100644
--- a/doc/highlights_old.shtml
+++ b/doc/highlights_old.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/highlights_old.shtml,v 1.1 2014/06/13 19:43:50 zender Exp $
+<!-- $Header$
Purpose: Highlights archive
diff --git a/doc/i18n.txt b/doc/i18n.txt
index 4b54478..1954dd3 100644
--- a/doc/i18n.txt
+++ b/doc/i18n.txt
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/i18n.txt,v 1.4 2012/09/11 22:28:22 zender Exp $
+# $Header$
# Purpose: NCO Internationalization (i18n)
diff --git a/doc/index.shtml b/doc/index.shtml
index 46c184b..5a7313c 100644
--- a/doc/index.shtml
+++ b/doc/index.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/index.shtml,v 1.951 2015/02/16 23:36:39 zender Exp $
+<!-- $Header$
Purpose: NCO homepage
URL:
@@ -51,7 +51,7 @@ Try to disable Spammers' machines:
<a href="http://sf.net/p/nco/discussion/9830">Help</a> /
<a href="#RTFM">Manual</a> /
<a href="http://sf.net/projects/nco">Project</a> /
-<a href="http://nco.cvs.sf.net/nco/nco/src/nco">Source</a> /
+<a href="https://github.com/czender/nco/tree/master/src/nco">Source</a> /
</td>
<td align="right" valign="top">
@@ -70,7 +70,7 @@ Try to disable Spammers' machines:
<p><h1 align="center">Welcome to the netCDF Operator (NCO) Homepage</h1>
<p><h2>
-Current NCO version is 4.4.8 last updated on <!--#flastmod file="VERSION"-->
+Current NCO version is 4.5.0 last updated on <!--#flastmod file="VERSION"-->
</h2>
<table border=0 width=100%>
@@ -149,7 +149,8 @@ and
<h2>Recent Releases & Milestones</h2>
<ul>
-<li>2015 Mar ??: 4.4.9 (<i>In progress</i>)
+<li>2015 Jun ??: 4.5.0 (<i>In progress</i>)
+<li>2015 May 21: 4.5.0 (<tt>ncra</tt> weights)
<li>2015 Feb 16: 4.4.8 (Precision-preserving Compression)
<li>2014 Dec 15: DOE ACME <a href="#prp_acme">project</a> commences</li>
<li>2014 Nov 26: 4.4.7 (Chunking features)
@@ -267,7 +268,7 @@ special cases.
<p>In March, 2000, NCO became an Open Source project hosted by
<a href="http://sf.net">SourceForge.net</a>.
This facilitates collaboration, code contributions, and support.
-There is a <a href="./TODO">TODO list</a> hundreds of items long!
+<p>In March, 2015, NCO source code moved to <a href="http://github.com">GitHub.com</a>.
No matter what your programming background there is a task you can help with.
From re-organizing the TODO list itself, to improving this cheesy
webpage, to documentation, to designing and implementing new features
@@ -348,6 +349,7 @@ Spatially intelligent, parallelized analysis tools are a key component
of the Group-Oriented Data Analysis and Distribution
(<a href="http://nco.sf.net/nco.html#godad">GODAD</a>) paradigm we
are developing for geoscience data analysis.</p>
+<hr></p>
<a name="nasa"></a> <!-- http://nco.sf.net#nasa -->
<a name="access"></a> <!-- http://nco.sf.net#access -->
@@ -388,6 +390,7 @@ incorporating geospatial features and parallelism into NCO.
See the ads for more details.
(<a href="http://dust.ess.uci.edu/hire/prg_anl_06_adv.pdf">PDF</a>,
<a href="http://dust.ess.uci.edu/hire/prg_anl_06_adv.txt">TXT</a>).
+<hr></p>
<dt><a name="prp_access"></a></dt> <!-- http://nco.sf.net#prp_access -->
<h2>NASA ACCESS 2011 Project</h2>
@@ -651,20 +654,33 @@ San Francisco, CA, December 5–9, 2006.
<!-- http://nco.sf.net#hgh -->
<dt><a name="Highlights"></a><a name="hgh"></a></dt>
<h2>Release Highlights</h2>
-Releases receive unique CVS tags and their tarballs are stored
+Stable releases receive unique tags and their tarballs are stored
<a href="http://nco.sf.net/src">here</a> on SourceForge and
-<a href="http://dust.ess.uci.edu/nco/src">here</a> on our server at UCI.
+<a href="https://github.com/czender/nco/releases">here</a> at GitHub.
You may also retrieve the source of tagged versions directly
-<a name="#Source">with CVS</a>.
+<a name="#Source">with <tt>git clone -b "nco-4.5.0" http://github.com/czender/nco.git nco-4.5.0</tt></a>.
<ul>
-<li><b>NCO 4.5.0</b>: (<i>Future</i>)
-<li><b>NCO 4.4.9</b>: (<i>In Progress, features completed or being worked on include</i>)
+<li><b>NCO 4.5.1</b>: (<i>Future</i>)
+<tt>ncks</tt> prints human-legible ISO8601 dates;
+<a href="http://nco.sf.net/nco.html#cnk">Chunking</a> bytes not elements, caching;
extensive hashing?;
netCDF4 compound types?;
-<a href="http://nco.sf.net/nco.html#cnk">Chunking</a> bytes not elements, caching;
-<tt>ncks</tt> prints human-legible ISO8601 dates;</li>
-Optimize diskless files?</li>
-<li><b>NCO 4.4.8</b>: (<i>Current Stable Release</i>)
+Optimize diskless files?;</li>
+<li><b>NCO 4.5.0</b>: (<i>In Progress, features completed or being worked on include</i>)
+<tt>ncra</tt> weights with </tt>--wgt wgt_nm</tt>;
+Regridding;</li>
+<li><b>NCO 4.4.9</b>: (<i>Current Stable Release</i>)
+Output chunking map/policy nco/nco = rew/all is default for netCDF3 input;
+Turn-off MM3 workaround for MM3->MM4 copying to speed-up compression-induced chunking;
+LFP chunking uses “reasonable defaults” when variable smaller than default chunksize;
+Shuffle by default when manually deflating;
+Support CF <tt>climatology</tt> attribute;
+Output chunking defaults to <tt>rew/all</tt> on netCDF3 input;
+Unchunking plays nicely with <tt>shuffle</tt>;
+<tt>ncra</tt> weights with </tt>--wgt 1,2,3</tt>;
+<tt>ncks</tt> suggests <tt>-C</tt> with <tt>-x -v crd</tt>;
+<tt>ncwa</tt> modifies <tt>coordinates</tt> attribute;</li>
+<li><b>NCO 4.4.8</b>:
Precision-Preserving Compression with <tt>--ppc</tt>;
Arithmetic operators <tt>-y mabs/mebs/mibs</tt></li>
<li><b>NCO 4.4.7</b>:
@@ -785,17 +801,17 @@ Intersection/union <a href="http://nco.sf.net/nco.html#unn">modes</a>;
<!-- http://nco.sf.net#bnr -->
<!-- http://nco.sf.net#binaries -->
-<dt><a name="Binaries"></a><a name="bnr"></a></dt>
+<!-- http://nco.sf.net#Binaries -->
+<dt><a name="Binaries"></a><a name="bnr"><a name="binaries"></a></dt>
<h2>Get NCO Binary Executables</h2>
-<p>NCO developers are too short-handed to provide pre-built binary
-executables for all platforms.
+<p>Pre-built binary executables are available for many platforms.
Our source tarballs are always up-to-date, and work on our
-development systems (Fedora, Ubuntu, and Mac OS X).
+development systems (Fedora, Ubuntu, and Mac OS X).
We also attempt to provide (theoretically) platform-independent sources
in the most common Linux package formats (Debian and RPM).
-Below are links to these and to packages for other platforms created
-by volunteers.
+Below are one-line installation instructions and links to these and to
+packages for other platforms created by volunteers.
Anyone willing to perform regular regression testing and porting
of NCO to other platforms is welcome.
Previous versions of these binaries are still available by searching
@@ -805,7 +821,7 @@ the directory index <a href="src">here</a>.
<h3><a href="http://www.ibm.com/servers/aix">AIX</a> on IBM mainframes</h3>
<ul> <!-- http://nco.sf.net/src/nco-4.2.5.aix53.tar.gz -->
<li><a href="src/nco-4.2.5.aix53.tar.gz">nco-4.2.5.aix53.tar.gz</a> (<!--#fsize file="src/nco-4.2.5.aix53.tar.gz"-->): Executables AIX 5.3-compatible (last updated <!--#flastmod file="src/nco-4.2.5.aix53.tar.gz"-->). Maintained by NCO Project.</li>
-Newer (beta- or pre-release) packages are sometimes available for AIX users as described <a href="http://nco.cvs.sf.net/nco/nco/doc/beta.txt">here</a>.
+Newer (beta- or pre-release) packages are sometimes available for AIX users as described <a href="https://github.com/czender/nco/tree/master/doc/beta.txt">here</a>.
Thanks to NSF for supporting AIX machines at NCAR over the years.
</ul>
@@ -814,20 +830,20 @@ Thanks to NSF for supporting AIX machines at NCAR over the years.
<h3><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux</a></h3>
<ul>
<!--
-<li><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux-compatible Intel systems, prebuilt binary executable <a href="http://www.debian.org">deb</a>: <a href="http://packages.debian.org/testing/math/nco.html">nco-4.4.8</a></li>
+<li><a href="http://www.debian.org">Debian</a> and <a href="http://www.ubuntu.com">Ubuntu</a> GNU/Linux-compatible Intel systems, prebuilt binary executable <a href="http://www.debian.org">deb</a>: <a href="http://packages.debian.org/testing/math/nco.html">nco-4.4.9</a></li>
-->
<a href="http://packages.debian.org/unstable/science/nco">Debian NCO</a> and
<a href="http://packages.ubuntu.com/natty/nco">Ubuntu NCO</a> homepages.
‘<tt>aptitude install nco</tt>’ installs the standard NCO for your Debian-compatible OS.
NCO packages in the Debian/Ubuntu repositories (i.e., Sid and Raring) generally lag the packages distributed here by 6–12 months.
<a name="beta"></a><a name="prerelease"> <!-- http://nco.sf.net#beta -->
-Newer (beta- or pre-release) packages are often available for intrepid Debian/Ubuntu users as described <a href="http://nco.cvs.sf.net/nco/nco/doc/beta.txt">here</a>.
-<dt>Debian package for most recent NCO release (install with, e.g., ‘<tt>dpkg --install nco_4.4.8-1_i386.deb</tt>’):</dt>
-<li><a href="src/nco_4.4.8-1_amd64.deb">nco_4.4.8-1_amd64.deb</a> (<!--#fsize file="src/nco_4.4.8-1_amd64.deb"-->): Executables AMD64-compatible (last updated <!--#flastmod file="src/nco_4.4.8-1_amd64.deb"-->)</li>
-<li><a href="src/nco_4.4.8-1.dsc">nco_4.4.8-1.dsc</a> (<!--#fsize file="src/nco_4.4.8-1.dsc"-->): Description (last updated <!--#flastmod file="src/nco_4.4.8-1.dsc"-->)</li>
-<li><a href="src/nco_4.4.8-1_amd64.changes">nco_4.4.8-1_amd64.changes</a> (<!--#fsize file="src/nco_4.4.8-1_amd64.changes"-->): Changes since last deb package (last updated <!--#flastmod file="src/nco_4.4.8-1_amd64.changes"-->)</li>
-<li><a href="src/nco_4.4.8.orig.tar.gz">nco_4.4.8.orig.tar.gz</a> (<!--#fsize file="src/nco_4.4.8.orig.tar.gz"-->): Upstream Source (last updated <!--#flastmod file="src/nco_4.4.8.orig.tar.gz"-->)</li>
-<li><a href="src/nco_4.4.8-1.diff.gz">nco_4.4.8-1.diff.gz</a> (<!--#fsize file="src/nco_4.4.8-1_amd64.changes"-->): Debian patch to upstream source (last updated <!--#flastmod file="src/nco_4.4.8-1_amd64.changes"-->)</li>
+Newer (beta- or pre-release) packages are often available for intrepid Debian/Ubuntu users as described <a href="https://github.com/czender/nco/tree/master/doc/beta.txt">here</a>.
+<dt>Debian package for most recent NCO release (install with, e.g., ‘<tt>dpkg --install nco_4.4.9-1_i386.deb</tt>’):</dt>
+<li><a href="src/nco_4.4.9-1_amd64.deb">nco_4.4.9-1_amd64.deb</a> (<!--#fsize file="src/nco_4.4.9-1_amd64.deb"-->): Executables AMD64-compatible (last updated <!--#flastmod file="src/nco_4.4.9-1_amd64.deb"-->)</li>
+<li><a href="src/nco_4.4.9-1.dsc">nco_4.4.9-1.dsc</a> (<!--#fsize file="src/nco_4.4.9-1.dsc"-->): Description (last updated <!--#flastmod file="src/nco_4.4.9-1.dsc"-->)</li>
+<li><a href="src/nco_4.4.9-1_amd64.changes">nco_4.4.9-1_amd64.changes</a> (<!--#fsize file="src/nco_4.4.9-1_amd64.changes"-->): Changes since last deb package (last updated <!--#flastmod file="src/nco_4.4.9-1_amd64.changes"-->)</li>
+<li><a href="src/nco_4.4.9.orig.tar.gz">nco_4.4.9.orig.tar.gz</a> (<!--#fsize file="src/nco_4.4.9.orig.tar.gz"-->): Upstream Source (last updated <!--#flastmod file="src/nco_4.4.9.orig.tar.gz"-->)</li>
+<li><a href="src/nco_4.4.9-1.diff.gz">nco_4.4.9-1.diff.gz</a> (<!--#fsize file="src/nco_4.4.9-1_amd64.changes"-->): Debian patch to upstream source (last updated <!--#flastmod file="src/nco_4.4.9-1_amd64.changes"-->)</li>
Thanks to Daniel Baumann, Barry deFreese, Francesco Lovergine,
Brian Mays, Rorik Peterson, and Matej Vela for their help packaging
NCO for Debian over the years.
@@ -867,22 +883,24 @@ Thanks to Gavin Burris and Kyle Wilcox for documenting build procedures for RHEL
<a name="macosx"></a> <!-- http://nco.sf.net#macosx -->
<a name="osx"></a> <!-- http://nco.sf.net#osx -->
<a name="macports"></a> <!-- http://nco.sf.net#macports -->
+<a name="homebrew"></a> <!-- http://nco.sf.net#homebrew -->
<a name="fink"></a> <!-- http://nco.sf.net#fink -->
<h3><a href="http://www.apple.com/macosx/">Mac OS X/Darwin</a></h3>
<ul>
<!--
-# Mac OS X 10.9 (Mavericks) systems (aerosol):
+# Mac OS X 10.10 (Yosemite) systems (aerosol):
/usr/bin/scp ~/nco/doc/index.shtml zender,nco at web.sf.net:/home/project-web/nco/htdocs
-cd ~/bin/MACOSX;tar cvzf ${DATA}/nco-4.4.8.macosx.10.9.tar.gz nc*;scp ${DATA}/nco-4.4.8.macosx.10.9.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
+cd ~/bin/MACOSX;tar cvzf ${DATA}/nco-4.4.9.macosx.10.10.tar.gz nc*;scp ${DATA}/nco-4.4.9.macosx.10.10.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src
-->
The most up-to-date binaries are probably those in the tarball below. Those unfamiliar with installing executables from tarballs may try the (older) <a href="http://en.wikipedia.org/wiki/Apple_Disk_Image">DMG</a> files (you may need to add <tt>/opt/local/bin</tt> to your executable path to access those operators).
-<li><a href="src/nco-4.4.8.macosx.10.9.tar.gz">nco-4.4.8.macosx.10.9.tar.gz</a> (<!--#fsize file="src/nco-4.4.8.macosx.10.9.tar.gz"-->): Executables MacOSX 10.9-compatible (last updated <!--#flastmod file="src/nco-4.4.8.macosx.10.9.tar.gz"-->).
+<li><a href="src/nco-4.4.9.macosx.10.10.tar.gz">nco-4.4.9.macosx.10.10.tar.gz</a> (<!--#fsize file="src/nco-4.4.9.macosx.10.10.tar.gz"-->): Executables MacOSX 10.10-compatible (last updated <!--#flastmod file="src/nco-4.4.9.macosx.10.10.tar.gz"-->).
(NB: These executables require
the <a href="http://trac.macosforge.org/projects/macports/wiki">MacPorts</a>
<a href="#bld_macports">dependencies</a> for <a href="http://svn.macports.org/repository/macports/trunk/dports/science/nco">NCO</a>). Maintained by NCO Project.</li>
<li><a href="src/nco-4.0.3_x86_10.6.dmg">nco-4.0.3_x86_10.6.dmg</a> (<!--#fsize file="src/nco-4.0.3_x86_10.6.dmg"-->): For Mac OS 10.6 (last updated <!--#flastmod file="src/nco-4.0.3_x86_10.6.dmg"-->). Maintained by Chad Cantwell.</li>
<li><a href="src/nco-4.0.7_x86_10.6.dmg">nco-4.0.7_x86_10.6.dmg</a> (<!--#fsize file="src/nco-4.0.7_x86_10.6.dmg"-->): For Mac OS 10.6 (last updated <!--#flastmod file="src/nco-4.0.7_x86_10.6.dmg"-->). Maintained by Chad Cantwell.</li>
<li><a href="http://fink.sf.net">Fink</a> packages for <a href="http://fink.sf.net/pdb/package.php/nco">NCO</a>: Currently NCO 3.9.5. Maintained by Alexander Hansen.</li>
+<li><a href="http://brew.sh">Homebrew</a> packages for <a href="https://github.com/Homebrew/homebrew-science/nco.rb">NCO</a>: Currently NCO 4.4.2. Maintained by Ian Lancaster (Alejandro Soto's instructions <a href="http://alejandrosoto.net/blog/2014/01/22/setting-up-my-mac-for-scientific-research">here</a>).</li>
<li><a href="http://trac.macosforge.org/projects/macports/wiki">MacPorts</a> infrastructure for <a href="http://svn.macports.org/repository/macports/trunk/dports/science/nco">NCO</a>: <a href="http://svn.macports.org/repository/macports/trunk/dports/science/nco">Portfile</a> for NCO 4.4.4. Maintained by Takeshi Enomoto.</li>
</ul>
@@ -898,10 +916,10 @@ To build NCO from source yourself using MSVC or Qt, please see the <a href="nco_
<ul>
<!-- Copy files from http://glace.ess.uci.edu
/usr/bin/scp /home/pvicente/nco/doc/index.shtml pvicente,nco at web.sf.net:/home/project-web/nco/htdocs
-/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.7.windows.mvs.exe pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
+/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.9.windows.mvs.exe pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
/usr/bin/scp /home/pvicente/windows_setup/nco-4.4.5.win32.cygwin.tar.gz pvicente,nco at web.sf.net:/home/project-web/nco/htdocs/src
-->
-<li><a href="src/nco-4.4.7.windows.mvs.exe">nco-4.4.7.windows.mvs.exe</a> (<!--#fsize file="src/nco-4.4.7.windows.mvs.exe"-->) : Windows Self-Extracting Installer (last updated <!--#flastmod file="src/nco-4.4.7.windows.mvs.exe"-->). Maintained by Pedro Vicente.</li>
+<li><a href="src/nco-4.4.9.windows.mvs.exe">nco-4.4.9.windows.mvs.exe</a> (<!--#fsize file="src/nco-4.4.9.windows.mvs.exe"-->) : Windows Self-Extracting Installer (last updated <!--#flastmod file="src/nco-4.4.9.windows.mvs.exe"-->). Maintained by Pedro Vicente.</li>
</ul>
<a name="cygwin"></a> <!-- http://nco.sf.net#cygwin -->
@@ -1060,51 +1078,45 @@ site.</li>
<!-- http://nco.sf.net#src -->
<dt><a name="Source"></a><a name="src"></a></dt>
-<h2>Get NCO Source Code</h2>
+<h2>Source Code</h2>
-The best way to acquire the source is with <a href="http://www.cvshome.org">CVS</a>.
-The second best way is to download the source as a compressed tarfile:
+The simplest way to acquire the source is to download the compressed tarball:
<ul>
<li>
-<a href="src/nco-4.4.8.tar.gz">nco-4.4.8.tar.gz</a>
-(<!--#fsize file="src/nco-4.4.8.tar.gz"--> compressed tar-file)<br>
-<!--#exec cmd="openssl dgst -md5 src/nco-4.4.8.tar.gz"--><br>
-<!--#exec cmd="openssl dgst -sha1 src/nco-4.4.8.tar.gz"-->
+<!-- scp ${DATA}/nco-4.4.9.tar.gz zender,nco at web.sf.net:/home/project-web/nco/htdocs/src -->
+<a href="src/nco-4.4.9.tar.gz">nco-4.4.9.tar.gz</a>
+(<!--#fsize file="src/nco-4.4.9.tar.gz"--> compressed tar-file)<br>
+<!--#exec cmd="openssl dgst -md5 src/nco-4.4.9.tar.gz"--><br>
+<!--#exec cmd="openssl dgst -sha1 src/nco-4.4.9.tar.gz"-->
</li>
</ul>
<!-- Equivalent source browsing in Unidata's netCDF SVN repository:
http://svn.unidata.ucar.edu/repos/netcdf/trunk/ncdump/nccopy.c -->
-<p>NCO's browsable
-<a href="http://nco.cvs.sf.net/nco/nco">CVS Repository</a>
+<p>The best way to acquire the source and occasionally update to the
+latest features is with <a href="http://git-scm.com/book/en/v2">Git</a>.
+The browsable <a href="https://github.com/czender/nco/tree/master">Repository</a>
contains up-to-the-minute sources and is the easiest way to stay
synchronized with NCO features.
-Retrieving NCO requires some familiarity with GNU development tools,
-especially <a href="http://www.cvshome.org">CVS</a> and
+Updating NCO source requires some familiarity with development tools,
+especially <a href="http://git-scm.com/book/en/v2">Git</a> and
<a href="http://www.gnu.org/software/make/make.html">Make</a>.
-Sourceforge provides
-<a href="http://sf.net/cvs/?group_id=3331">generic instructions</a>
-for accessing their CVS servers.
-First log into the NCO CVS server:
-<p><tt>cvs -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco login</tt></p>
-Hit <tt>return</tt> when asked for the CVS password.
-This login procedure is only required the first time you access the CVS server.
-Then you may retrieve any NCO distribution you wish.
+You may retrieve any NCO distribution you wish from
+<a href="https://help.github.com">GitHub</a>.
Usually you wish to retrieve a recent tagged (i.e., released) version.
-This command retrieves and places NCO version <tt>4.4.8</tt> (which is
-tagged as <tt>nco-4_4_8</tt> due to CVS rules) into local directory
-<tt>nco-4.4.8</tt>:
-<p><tt>cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -r nco-4_4_8 -d nco-4.4.8 nco</tt></p>
+This command retrieves the entire NCO repository (< 20 MB) and
+then checks out NCO version <tt>4.4.9</tt>:
+<p><tt>git clone https://github.com/czender/nco.git;cd nco;git checkout -b nco-4.4.9</tt></p>
This command retrieves the current (“bleeding edge”)
development version of NCO into a local directory named <tt>nco</tt>:
-<p><tt>cvs -z3 -d:pserver:anonymous at nco.cvs.sf.net:/cvsroot/nco co -kk nco</tt></p>
+<p><tt>git clone https://github.com/czender/nco.git ~/nco</tt></p>
Track changes to the development version using
-<p><tt>cd nco;cvs update -kk</tt></p>
+<p><tt>cd ~/nco;git pull</tt></p>
One difference between running a "tagged" release
-(e.g., <tt>nco-4_4_8</tt>) and the development version is that the
+(e.g., <tt>nco-4.4.9</tt>) and the development version is that the
tagged release operators will print a valid version number (e.g.,
-<tt>4.4.8</tt>) when asked to do so with the <tt>-r</tt> flag
+<tt>4.4.9</tt>) when asked to do so with the <tt>-r</tt> flag
(e.g., <tt>ncks -r</tt>).
The development version simply places today's date in place of the
version.
@@ -1154,8 +1166,14 @@ install the prerequisites:
<a href="http://www.unidata.ucar.edu/packages/udunits">UDUnits</a> (allows dimensional unit transformations).
If possible, install this software stack from pre-built binaries
(commands to do so on Debian and RPM systems are given just below).
-Failing that (e.g., lack of root access, or systems without packages
-such as AIX), build these all with the same compiler and switches.
+ANTLR binaries from major distributions are pre-built with the source
+patch necessary to allow NCO to link to ANTLR.
+If you must build the source stack yourself (e.g., due to lack of root
+access, or systems without packages such as AIX), build all libraries
+with the same compiler and switches.
+The ANTLR distributions must be built with the source file
+<tt>CharScanner.hpp</tt> patched to include this line:
+<tt>#include <cstring></tt> or else <tt>ncap2</tt> will not compile.
Recent versions of netCDF automatically build OPeNDAP and UDUnits.
NCO is mostly written in C99, and although you <i>may</i> mix and
match compilers, this is often difficult in practice and is not recommended.
@@ -1228,7 +1246,7 @@ Users should instead first download and install the Antlr found <a href="http://
<tt>
<dt>wget http://dust.ess.uci.edu/nco/nco.tar.gz</dt>
<dt>tar xvzf nco.tar.gz</dt>
-<dt>cd nco-4.4.8</dt>
+<dt>cd nco-4.4.9</dt>
<dt>./configure --prefix=/usr/local</dt>
<dt>make</dt>
<dt>sudo make install</dt>
@@ -1261,12 +1279,13 @@ Still having trouble building NCO from source? Read these
<!-- http://nco.sf.net#NCAR -->
<dt><a name="NCAR"></a></dt>
<h2>Using NCO at UCI, NCAR, and other High Performance Computing Centers (HPCCs)</h2>
-<p>UC Irvine and NCAR users <i>may</i> find pre-built,
+<p>UC Irvine, NCAR, and DOE ORNL/OLCF users <i>may</i> find pre-built,
<i>almost</i> up-to-date NCO executables in the following locations.
-Users at NCAR/NWSC should first try the CISL-<i>supported</i>
-executables with <tt>module load nco</tt>.
+Users at NCAR/NWSC and ORNL/OLCF should first try the institution-<i>supported</i>
+executables with <tt>module load nco</tt>.
+These stable releases are usually a few versions and up to two years old.
The unsatisfied or adventurous may try my personal executables which
-are built from the “main trunk” of NCO, not a tagged
+are built from the “master branch” of NCO, not a tagged
version, and therefore may behave slightly differently.
<ul>
<li>NCAR CISL <tt>yellowstone.ucar.edu</tt> (Linux 2.6.x): <tt>~zender/bin/LINUXAMD64</tt></li>
@@ -1345,10 +1364,10 @@ Comments welcome. Updates will be posted right here.
<a name="bug_nc4_rename"></a>
<li><i>netCDF4 Renaming bugs:</i>
Unforunately from 2007–present (February, 2015) the netCDF
-library (versions 4.0.0–4.3.3-rc3) contained bugs or limitations
+library (versions 4.0.0–4.3.3) contained bugs or limitations
that prevent <tt>ncrename</tt> (and other netCDF4-based software)
-from correctly renaming coordinate variables, dimensions, and groups
-in netCDF4 files.
+from correctly renaming coordinate variables, dimensions, groups,
+and attributes in netCDF4 files.
(To our knowledge the netCDF library calls for renaming always work
well on netCDF3 files so one workaround to netCDF4 bugs is convert to
netCDF3, rename, then convert back).
@@ -1356,6 +1375,8 @@ A summary of renaming limitations associated with particular versions
of netCDF4 is maintained in the online manual
<a href="http://nco.sf.net/nco.html#bug_nc4_rename">here</a>.
Important updates will also be posted here on the homepage.
+There are no known bugs with renaming features as of netCDF library
+version 4.3.3.1 (March, 2015).
</li>
</ul>
@@ -1614,7 +1635,7 @@ community.
<a href="http://sf.net/p/nco/discussion/9830">Help</a> /
<a href="#RTFM">Manual</a> /
<a href="http://sf.net/projects/nco">Project</a> /
-<a href="http://nco.cvs.sf.net/nco/nco/src/nco/">Source</a> /
+<a href="https://github.com/czender/nco/tree/master/src/nco/">Source</a> /
</td>
<td align="right" valign="top">
diff --git a/doc/insure.txt b/doc/insure.txt
index c32e509..310b7ef 100644
--- a/doc/insure.txt
+++ b/doc/insure.txt
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/insure.txt,v 1.1 2002/01/23 09:01:50 zender Exp $
+$Header$
Purpose: Keep track of memory access problems with NCO reported by insure
diff --git a/doc/man_end.txt b/doc/man_end.txt
index d0b7a25..6a7e3ae 100644
--- a/doc/man_end.txt
+++ b/doc/man_end.txt
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/doc/man_end.txt,v 1.9 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/doc/man_srt.txt b/doc/man_srt.txt
index 6f61df9..1b6a8a9 100644
--- a/doc/man_srt.txt
+++ b/doc/man_srt.txt
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/doc/man_srt.txt,v 1.2 2008/05/11 20:30:37 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Header file for NCO man pages
.\" Pre-pend this file to top of each NCO man page
.\" Usage:
diff --git a/doc/milestones_old.shtml b/doc/milestones_old.shtml
index fed824d..5ca5f46 100644
--- a/doc/milestones_old.shtml
+++ b/doc/milestones_old.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/milestones_old.shtml,v 1.1 2014/06/13 19:43:50 zender Exp $
+<!-- $Header$
Purpose: Milestones archive
diff --git a/doc/mpi.txt b/doc/mpi.txt
index 5da5de4..73f1efe 100644
--- a/doc/mpi.txt
+++ b/doc/mpi.txt
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/mpi.txt,v 1.19 2009/01/13 23:17:13 zender Exp $ -*-text-*-
+$Header$ -*-text-*-
Installing an MPI Environment for NCO:
diff --git a/doc/nco.dvi b/doc/nco.dvi
deleted file mode 100644
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-<title>NCO 4.4.8 User Guide</title>
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-<h1 class="settitle" align="center"><acronym>NCO</acronym> 4.4.8 User Guide</h1>
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-<p>This file documents <acronym>NCO</acronym>, a collection of utilities to
-manipulate and analyze netCDF files.
-</p>
-<p>Copyright © 1995–2015 Charlie Zender
-</p>
-<p>This is the first edition of the <cite>NCO User Guide</cite>,<br>
-and is consistent with version 2<!-- /@w --> of <samp>texinfo.tex</samp>.
-</p>
-<p>Permission is granted to copy, distribute and/or modify this document
-under the terms of the <acronym>GNU</acronym> Free Documentation License, Version 1.3<!-- /@w -->
-or any later version published by the Free Software Foundation;
-with no Invariant Sections, no Front-Cover Texts, and no Back-Cover
-Texts. The license is available online at
-<a href="http://www.gnu.org/copyleft/fdl.html">http://www.gnu.org/copyleft/fdl.html</a>
-</p>
-<p>The original author of this software, Charlie Zender, wants to improve it
-with the help of your suggestions, improvements, bug-reports, and patches.<br>
-Charlie Zender <surname at uci dot edu> (yes, my surname is zender)<br>
-3200 Croul Hall<br>
-Department of Earth System Science<br>
-University of California, Irvine<br>
-Irvine, CA 92697-3100<br>
-</p>
-
-
-
-<a name="SEC_Contents"></a>
-<h2 class="contents-heading">Table of Contents</h2>
-
-<div class="contents">
-
-<ul class="no-bullet">
- <li><a name="toc-Foreword-1" href="#Foreword">Foreword</a></li>
- <li><a name="toc-Summary-1" href="#Summary">Summary</a></li>
- <li><a name="toc-Introduction-1" href="#Introduction">1 Introduction</a>
- <ul class="no-bullet">
- <li><a name="toc-Availability-1" href="#Availability">1.1 Availability</a></li>
- <li><a name="toc-How-to-Use-This-Guide" href="#How-to-Use-This-guide">1.2 How to Use This Guide</a></li>
- <li><a name="toc-Operating-systems-compatible-with-NCO" href="#Compatability">1.3 Operating systems compatible with <acronym>NCO</acronym></a>
- <ul class="no-bullet">
- <li><a name="toc-Compiling-NCO-for-Microsoft-Windows-OS" href="#Windows-Operating-System">1.3.1 Compiling <acronym>NCO</acronym> for Microsoft Windows <acronym>OS</acronym></a></li>
- </ul></li>
- <li><a name="toc-Symbolic-Links-1" href="#Symbolic-Links">1.4 Symbolic Links</a></li>
- <li><a name="toc-Libraries-1" href="#Libraries">1.5 Libraries</a></li>
- <li><a name="toc-netCDF2_002f3_002f4-and-HDF4_002f5-Support-1" href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">1.6 netCDF2/3/4 and HDF4/5 Support</a></li>
- <li><a name="toc-Help-Requests-and-Bug-Reports-1" href="#Help-Requests-and-Bug-Reports">1.7 Help Requests and Bug Reports</a></li>
- </ul></li>
- <li><a name="toc-Operator-Strategies" href="#Strategies">2 Operator Strategies</a>
- <ul class="no-bullet">
- <li><a name="toc-Philosophy-1" href="#Philosophy">2.1 Philosophy</a></li>
- <li><a name="toc-Climate-Model-Paradigm-1" href="#Climate-Model-Paradigm">2.2 Climate Model Paradigm</a></li>
- <li><a name="toc-Temporary-Output-Files-1" href="#Temporary-Output-Files">2.3 Temporary Output Files</a></li>
- <li><a name="toc-Appending-Variables-1" href="#Appending-Variables">2.4 Appending Variables</a></li>
- <li><a name="toc-Simple-Arithmetic-and-Interpolation-1" href="#Simple-Arithmetic-and-Interpolation">2.5 Simple Arithmetic and Interpolation</a></li>
- <li><a name="toc-Statistics-vs_002e-Concatenation-1" href="#Statistics-vs_002e-Concatenation">2.6 Statistics vs. Concatenation</a>
- <ul class="no-bullet">
- <li><a name="toc-Concatenators-ncrcat-and-ncecat" href="#Concatenation">2.6.1 Concatenators <code>ncrcat</code> and <code>ncecat</code></a></li>
- <li><a name="toc-Averagers-nces_002c-ncra_002c-and-ncwa" href="#Averaging">2.6.2 Averagers <code>nces</code>, <code>ncra</code>, and <code>ncwa</code></a></li>
- <li><a name="toc-Interpolator-ncflint" href="#Interpolating">2.6.3 Interpolator <code>ncflint</code></a></li>
- </ul></li>
- <li><a name="toc-Large-Numbers-of-Files-1" href="#Large-Numbers-of-Files">2.7 Large Numbers of Files</a></li>
- <li><a name="toc-Large-Datasets-1" href="#Large-Datasets">2.8 Large Datasets</a></li>
- <li><a name="toc-Memory-Requirements-1" href="#Memory-Requirements">2.9 Memory Requirements</a>
- <ul class="no-bullet">
- <li><a name="toc-Single-and-Multi_002dfile-Operators-1" href="#Single-and-Multi_002dfile-Operators">2.9.1 Single and Multi-file Operators</a></li>
- <li><a name="toc-Memory-for-ncap2-1" href="#Memory-for-ncap2">2.9.2 Memory for <code>ncap2</code></a></li>
- </ul></li>
- <li><a name="toc-Performance-1" href="#Performance">2.10 Performance</a></li>
- </ul></li>
- <li><a name="toc-Shared-Features" href="#Shared-features">3 Shared Features</a>
- <ul class="no-bullet">
- <li><a name="toc-Internationalization-1" href="#Internationalization">3.1 Internationalization</a></li>
- <li><a name="toc-Metadata-Optimization-1" href="#Metadata-Optimization">3.2 Metadata Optimization</a></li>
- <li><a name="toc-OpenMP-Threading-1" href="#OpenMP-Threading">3.3 OpenMP Threading</a></li>
- <li><a name="toc-Command-Line-Options-1" href="#Command-Line-Options">3.4 Command Line Options</a></li>
- <li><a name="toc-Specifying-Input-Files-1" href="#Specifying-Input-Files">3.5 Specifying Input Files</a></li>
- <li><a name="toc-Specifying-Output-Files-1" href="#Specifying-Output-Files">3.6 Specifying Output Files</a></li>
- <li><a name="toc-Accessing-Remote-Files" href="#Remote-storage">3.7 Accessing Remote Files</a>
- <ul class="no-bullet">
- <li><a name="toc-OPeNDAP-1" href="#OPeNDAP">3.7.1 <acronym>OPeNDAP</acronym></a></li>
- </ul></li>
- <li><a name="toc-Retaining-Retrieved-Files-1" href="#Retaining-Retrieved-Files">3.8 Retaining Retrieved Files</a></li>
- <li><a name="toc-File-Formats-and-Conversion-1" href="#File-Formats-and-Conversion">3.9 File Formats and Conversion</a>
- <ul class="no-bullet">
- <li><a name="toc-File-Formats-1" href="#File-Formats">3.9.1 File Formats</a></li>
- <li><a name="toc-Determining-File-Format-1" href="#Determining-File-Format">3.9.2 Determining File Format</a></li>
- <li><a name="toc-File-Conversion-1" href="#File-Conversion">3.9.3 File Conversion</a></li>
- <li><a name="toc-Autoconversion-1" href="#Autoconversion">3.9.4 Autoconversion</a></li>
- </ul></li>
- <li><a name="toc-Large-File-Support-1" href="#Large-File-Support">3.10 Large File Support</a></li>
- <li><a name="toc-Subsetting-Files-1" href="#Subsetting-Files">3.11 Subsetting Files</a></li>
- <li><a name="toc-Subsetting-Coordinate-Variables-1" href="#Subsetting-Coordinate-Variables">3.12 Subsetting Coordinate Variables</a></li>
- <li><a name="toc-Group-Path-Editing-1" href="#Group-Path-Editing">3.13 Group Path Editing</a>
- <ul class="no-bullet">
- <li><a name="toc-Deletion_002c-Truncation_002c-and-Flattening-of-Groups" href="#Flattening-Groups">3.13.1 Deletion, Truncation, and Flattening of Groups</a></li>
- <li><a name="toc-Moving-Groups-1" href="#Moving-Groups">3.13.2 Moving Groups</a></li>
- <li><a name="toc-Dismembering-Files-1" href="#Dismembering-Files">3.13.3 Dismembering Files</a></li>
- <li><a name="toc-Checking-CF_002dcompliance-1" href="#Checking-CF_002dcompliance">3.13.4 Checking CF-compliance</a></li>
- </ul></li>
- <li><a name="toc-C-and-Fortran-Index-conventions" href="#C-and-Fortran-Index-Conventions">3.14 C and Fortran Index conventions</a></li>
- <li><a name="toc-Hyperslabs-1" href="#Hyperslabs">3.15 Hyperslabs</a></li>
- <li><a name="toc-Stride-1" href="#Stride">3.16 Stride</a></li>
- <li><a name="toc-Record-Appending-1" href="#Record-Appending">3.17 Record Appending</a></li>
- <li><a name="toc-Subcycle-1" href="#Subcycle">3.18 Subcycle</a></li>
- <li><a name="toc-Multislabs-1" href="#Multislabs">3.19 Multislabs</a></li>
- <li><a name="toc-Wrapped-Coordinates-1" href="#Wrapped-Coordinates">3.20 Wrapped Coordinates</a></li>
- <li><a name="toc-Auxiliary-Coordinates-1" href="#Auxiliary-Coordinates">3.21 Auxiliary Coordinates</a></li>
- <li><a name="toc-UDUnits-Support-1" href="#UDUnits-Support">3.22 UDUnits Support</a></li>
- <li><a name="toc-Rebasing-Time-Coordinate-1" href="#Rebasing-Time-Coordinate">3.23 Rebasing Time Coordinate</a></li>
- <li><a name="toc-Multiple-Record-Dimensions-1" href="#Multiple-Record-Dimensions">3.24 Multiple Record Dimensions</a></li>
- <li><a name="toc-Missing-values" href="#Missing-Values">3.25 Missing values</a></li>
- <li><a name="toc-Chunking-1" href="#Chunking">3.26 Chunking</a></li>
- <li><a name="toc-Compression-1" href="#Compression">3.27 Compression</a></li>
- <li><a name="toc-Deflation-1" href="#Deflation">3.28 Deflation</a></li>
- <li><a name="toc-MD5-digests-1" href="#MD5-digests">3.29 MD5 digests</a></li>
- <li><a name="toc-Buffer-sizes-1" href="#Buffer-sizes">3.30 Buffer sizes</a></li>
- <li><a name="toc-RAM-disks-1" href="#RAM-disks">3.31 RAM disks</a></li>
- <li><a name="toc-Packed-data-1" href="#Packed-data">3.32 Packed data</a>
- <ul class="no-bullet">
- <li><a name="toc-Packing-Algorithm" href="#Packing-Algorithm">Packing Algorithm</a></li>
- <li><a name="toc-Unpacking-Algorithm" href="#Unpacking-Algorithm">Unpacking Algorithm</a></li>
- <li><a name="toc-Default-Handling-of-Packed-Data" href="#Default-Handling-of-Packed-Data">Default Handling of Packed Data</a></li>
- <li><a name="toc-Default-Handling-of-Packed-Data-1" href="#Default-Handling-of-Packed-Data-1">Default Handling of Packed Data</a></li>
- </ul></li>
- <li><a name="toc-Operation-Types-1" href="#Operation-Types">3.33 Operation Types</a></li>
- <li><a name="toc-Type-Conversion-1" href="#Type-Conversion">3.34 Type Conversion</a>
- <ul class="no-bullet">
- <li><a name="toc-Automatic-type-conversion-1" href="#Automatic-type-conversion">3.34.1 Automatic type conversion</a></li>
- <li><a name="toc-Promoting-Single_002dprecision-to-Double-1" href="#Promoting-Single_002dprecision-to-Double">3.34.2 Promoting Single-precision to Double</a></li>
- <li><a name="toc-Manual-type-conversion-1" href="#Manual-type-conversion">3.34.3 Manual type conversion</a></li>
- </ul></li>
- <li><a name="toc-Batch-Mode-1" href="#Batch-Mode">3.35 Batch Mode</a></li>
- <li><a name="toc-History-Attribute-1" href="#History-Attribute">3.36 History Attribute</a></li>
- <li><a name="toc-File-List-Attributes-1" href="#File-List-Attributes">3.37 File List Attributes</a></li>
- <li><a name="toc-CF-Conventions-1" href="#CF-Conventions">3.38 <acronym>CF</acronym> Conventions</a></li>
- <li><a name="toc-ARM-Conventions-1" href="#ARM-Conventions">3.39 <acronym>ARM</acronym> Conventions</a></li>
- <li><a name="toc-Operator-Version-1" href="#Operator-Version">3.40 Operator Version</a></li>
- </ul></li>
- <li><a name="toc-Reference-Manual-1" href="#Reference-Manual">4 Reference Manual</a>
- <ul class="no-bullet">
- <li><a name="toc-ncap2-netCDF-Arithmetic-Processor-1" href="#ncap2-netCDF-Arithmetic-Processor">4.1 <code>ncap2</code> netCDF Arithmetic Processor</a>
- <ul class="no-bullet">
- <li><a name="toc-Syntax-of-ncap2-statements-1" href="#Syntax-of-ncap2-statements">4.1.1 Syntax of <code>ncap2</code> statements</a></li>
- <li><a name="toc-Expressions-1" href="#Expressions">4.1.2 Expressions</a></li>
- <li><a name="toc-Dimensions-1" href="#Dimensions">4.1.3 Dimensions</a></li>
- <li><a name="toc-Left-hand-casting-1" href="#Left-hand-casting">4.1.4 Left hand casting</a></li>
- <li><a name="toc-Arrays-and-hyperslabs-1" href="#Arrays-and-hyperslabs">4.1.5 Arrays and hyperslabs</a></li>
- <li><a name="toc-Attributes-1" href="#Attributes">4.1.6 Attributes</a></li>
- <li><a name="toc-Number-literals-1" href="#Number-literals">4.1.7 Number literals</a></li>
- <li><a name="toc-if-statement-1" href="#if-statement">4.1.8 if statement</a></li>
- <li><a name="toc-print-statement-1" href="#print-statement">4.1.9 print statement</a></li>
- <li><a name="toc-Missing-values-ncap2-1" href="#Missing-values-ncap2">4.1.10 Missing values ncap2</a></li>
- <li><a name="toc-Methods-and-functions-1" href="#Methods-and-functions">4.1.11 Methods and functions</a></li>
- <li><a name="toc-RAM-variables-1" href="#RAM-variables">4.1.12 <acronym>RAM</acronym> variables</a></li>
- <li><a name="toc-Where-statement-1" href="#Where-statement">4.1.13 Where statement</a></li>
- <li><a name="toc-Loops-1" href="#Loops">4.1.14 Loops</a></li>
- <li><a name="toc-Include-files-1" href="#Include-files">4.1.15 Include files</a></li>
- <li><a name="toc-sort-methods" href="#Sort-methods">4.1.16 <code>sort</code> methods</a></li>
- <li><a name="toc-Irregular-Grids" href="#Irregular-grids">4.1.17 Irregular Grids</a></li>
- <li><a name="toc-Bilinear-interpolation-1" href="#Bilinear-interpolation">4.1.18 Bilinear interpolation</a></li>
- <li><a name="toc-GSL-special-functions-1" href="#GSL-special-functions">4.1.19 GSL special functions</a></li>
- <li><a name="toc-GSL-interpolation-1" href="#GSL-interpolation">4.1.20 GSL interpolation</a></li>
- <li><a name="toc-GSL-least_002dsquares-fitting-1" href="#GSL-least_002dsquares-fitting">4.1.21 GSL least-squares fitting</a></li>
- <li><a name="toc-GSL-statistics-1" href="#GSL-statistics">4.1.22 GSL statistics</a></li>
- <li><a name="toc-GSL-random-number-generation-1" href="#GSL-random-number-generation">4.1.23 GSL random number generation</a></li>
- <li><a name="toc-Examples-ncap2-1" href="#Examples-ncap2">4.1.24 Examples ncap2</a></li>
- <li><a name="toc-Intrinsic-mathematical-methods-1" href="#Intrinsic-mathematical-methods">4.1.25 Intrinsic mathematical methods</a></li>
- <li><a name="toc-Operator-precedence-and-associativity-1" href="#Operator-precedence-and-associativity">4.1.26 Operator precedence and associativity</a></li>
- <li><a name="toc-ID-Quoting-1" href="#ID-Quoting">4.1.27 ID Quoting</a></li>
- </ul></li>
- <li><a name="toc-ncatted-netCDF-Attribute-Editor-1" href="#ncatted-netCDF-Attribute-Editor">4.2 <code>ncatted</code> netCDF Attribute Editor</a></li>
- <li><a name="toc-ncbo-netCDF-Binary-Operator-1" href="#ncbo-netCDF-Binary-Operator">4.3 <code>ncbo</code> netCDF Binary Operator</a></li>
- <li><a name="toc-nces-netCDF-Ensemble-Statistics-1" href="#nces-netCDF-Ensemble-Statistics">4.4 <code>nces</code> netCDF Ensemble Statistics</a></li>
- <li><a name="toc-ncecat-netCDF-Ensemble-Concatenator-1" href="#ncecat-netCDF-Ensemble-Concatenator">4.5 <code>ncecat</code> netCDF Ensemble Concatenator</a></li>
- <li><a name="toc-ncflint-netCDF-File-Interpolator-1" href="#ncflint-netCDF-File-Interpolator">4.6 <code>ncflint</code> netCDF File Interpolator</a></li>
- <li><a name="toc-ncks-netCDF-Kitchen-Sink-1" href="#ncks-netCDF-Kitchen-Sink">4.7 <code>ncks</code> netCDF Kitchen Sink</a>
- <ul class="no-bullet">
- <li><a name="toc-Options-specific-to-ncks" href="#Options-specific-to-ncks">Options specific to <code>ncks</code></a></li>
- <li><a name="toc-Filters-for-ncks-1" href="#Filters-for-ncks">4.7.1 Filters for <code>ncks</code></a></li>
- </ul></li>
- <li><a name="toc-ncpdq-netCDF-Permute-Dimensions-Quickly-1" href="#ncpdq-netCDF-Permute-Dimensions-Quickly">4.8 <code>ncpdq</code> netCDF Permute Dimensions Quickly</a>
- <ul class="no-bullet">
- <li><a name="toc-Packing-and-Unpacking-Functions" href="#Packing-and-Unpacking-Functions">Packing and Unpacking Functions</a></li>
- <li><a name="toc-Dimension-Permutation" href="#Dimension-Permutation">Dimension Permutation</a></li>
- </ul></li>
- <li><a name="toc-ncra-netCDF-Record-Averager-1" href="#ncra-netCDF-Record-Averager">4.9 <code>ncra</code> netCDF Record Averager</a></li>
- <li><a name="toc-ncrcat-netCDF-Record-Concatenator-1" href="#ncrcat-netCDF-Record-Concatenator">4.10 <code>ncrcat</code> netCDF Record Concatenator</a></li>
- <li><a name="toc-ncrename-netCDF-Renamer-1" href="#ncrename-netCDF-Renamer">4.11 <code>ncrename</code> netCDF Renamer</a></li>
- <li><a name="toc-ncwa-netCDF-Weighted-Averager-1" href="#ncwa-netCDF-Weighted-Averager">4.12 <code>ncwa</code> netCDF Weighted Averager</a>
- <ul class="no-bullet">
- <li><a name="toc-Mask-condition-1" href="#Mask-condition">4.12.1 Mask condition</a></li>
- <li><a name="toc-Normalization-and-Integration-1" href="#Normalization-and-Integration">4.12.2 Normalization and Integration</a></li>
- </ul></li>
- </ul></li>
- <li><a name="toc-Contributing-1" href="#Contributing">5 Contributing</a>
- <ul class="no-bullet">
- <li><a name="toc-Contributors-1" href="#Contributors">5.1 Contributors</a></li>
- <li><a name="toc-Citation-1" href="#Citation">5.2 Citation</a></li>
- <li><a name="toc-Proposals-for-Institutional-Funding-1" href="#Proposals-for-Institutional-Funding">5.3 Proposals for Institutional Funding</a></li>
- </ul></li>
- <li><a name="toc-Quick-Start-1" href="#Quick-Start">6 Quick Start</a>
- <ul class="no-bullet">
- <li><a name="toc-Daily-data-in-one-file-1" href="#Daily-data-in-one-file">6.1 Daily data in one file</a></li>
- <li><a name="toc-Monthly-data-in-one-file-1" href="#Monthly-data-in-one-file">6.2 Monthly data in one file</a></li>
- <li><a name="toc-One-time-point-one-file-1" href="#One-time-point-one-file">6.3 One time point one file</a></li>
- <li><a name="toc-Multiple-files-with-multiple-time-points-1" href="#Multiple-files-with-multiple-time-points">6.4 Multiple files with multiple time points</a></li>
- </ul></li>
- <li><a name="toc-CMIP5-Example-1" href="#CMIP5-Example">7 <acronym>CMIP5</acronym> Example</a>
- <ul class="no-bullet">
- <li><a name="toc-Combine-Files-1" href="#Combine-Files">7.1 Combine Files</a></li>
- <li><a name="toc-Global-Distribution-of-Long_002dterm-Average-1" href="#Global-Distribution-of-Long_002dterm-Average">7.2 Global Distribution of Long-term Average</a></li>
- <li><a name="toc-Annual-Average-over-Regions-1" href="#Annual-Average-over-Regions">7.3 Annual Average over Regions</a></li>
- <li><a name="toc-Monthly-Cycle-1" href="#Monthly-Cycle">7.4 Monthly Cycle</a></li>
- <li><a name="toc-Regrid-MODIS-Data-1" href="#Regrid-MODIS-Data">7.5 Regrid <acronym>MODIS</acronym> Data</a></li>
- <li><a name="toc-Add-Coordinates-to-MODIS-Data-1" href="#Add-Coordinates-to-MODIS-Data">7.6 Add Coordinates to <acronym>MODIS</acronym> Data</a></li>
- <li><a name="toc-Permute-MODIS-Coordinates-1" href="#Permute-MODIS-Coordinates">7.7 Permute <acronym>MODIS</acronym> Coordinates</a></li>
- </ul></li>
- <li><a name="toc-Parallel-1" href="#Parallel">8 Parallel</a></li>
- <li><a name="toc-CCSM-Example-1" href="#CCSM-Example">9 CCSM Example</a></li>
- <li><a name="toc-References" href="#mybibnode">10 References</a></li>
- <li><a name="toc-General-Index-1" href="#General-Index">General Index</a></li>
-</ul>
-</div>
-
-
-<a name="Top"></a>
-<div class="header">
-<p>
-Next: <a href="#Foreword" accesskey="n" rel="next">Foreword</a>, Previous: <a href="dir.html#Top" accesskey="p" rel="prev">(dir)</a>, Up: <a href="dir.html#Top" accesskey="u" rel="up">(dir)</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="NCO-User-Guide"></a>
-<h1 class="top">NCO User Guide</h1>
-
-<table class="cartouche" border="1"><tr><td>
-<p><b>Note to readers of the NCO User Guide in HTML format</b>:
-<b>The <a href="./nco.pdf">NCO User Guide in PDF format</a>
-(also on <a href="http://nco.sf.net/nco.pdf">SourceForge</a>)
-contains the complete NCO documentation.</b>
-<br>This HTML documentation is equivalent except it refers you to the
-printed (i.e., DVI, PostScript, and PDF) documentation for description
-of complex mathematical expressions. Also, images appear only in the
-PDF document due to SourceForge limitations.</td></tr></table>
-
-<p>The netCDF Operators, or <acronym>NCO</acronym>, are a suite of programs known as
-operators.
-The operators facilitate manipulation and analysis of data stored in the
-self-describing netCDF format, available from
-(<a href="http://www.unidata.ucar.edu/packages/netcdf">http://www.unidata.ucar.edu/packages/netcdf</a>).
-Each <acronym>NCO</acronym> operator (e.g., ncks) takes netCDF input
-file(s), performs an operation (e.g., averaging, hyperslabbing, or
-renaming), and outputs a processed netCDF file.
-Although most users of netCDF data are involved in scientific research,
-these data formats, and thus <acronym>NCO</acronym>, are generic and are equally
-useful in fields from agriculture to zoology.
-The <acronym>NCO</acronym> User Guide illustrates <acronym>NCO</acronym> use with
-examples from the field of climate modeling and analysis.
-The <acronym>NCO</acronym> homepage is <a href="http://nco.sf.net">http://nco.sf.net</a>, and
-there is a mirror at <a href="http://dust.ess.uci.edu/nco">http://dust.ess.uci.edu/nco</a>.
-</p>
-<p>This documentation is for <acronym>NCO</acronym> version 4.4.8.
-It was last updated 17 February 2015.
-Corrections, additions, and rewrites of this documentation are very
-welcome.
-</p>
-<p>Enjoy,<br>
-Charlie Zender
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Foreword" accesskey="1">Foreword</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Summary" accesskey="2">Summary</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Introduction" accesskey="3">Introduction</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Strategies" accesskey="4">Strategies</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Shared-features" accesskey="5">Shared features</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Reference-Manual" accesskey="6">Reference Manual</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Contributing" accesskey="7">Contributing</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Quick-Start" accesskey="8">Quick Start</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#CMIP5-Example" accesskey="9">CMIP5 Example</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Parallel">Parallel</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#CCSM-Example">CCSM Example</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#mybibnode">mybibnode</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#General-Index">General Index</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="fwd"></a> <!-- http://nco.sf.net/nco.html#fwd --><hr>
-<a name="Foreword"></a>
-<div class="header">
-<p>
-Next: <a href="#Summary" accesskey="n" rel="next">Summary</a>, Previous: <a href="#Top" accesskey="p" rel="prev">Top</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Foreword-1"></a>
-<h2 class="unnumbered">Foreword</h2>
-<a name="index-foreword"></a>
-<a name="index-Charlie-Zender"></a>
-<p><acronym>NCO</acronym> is the result of software needs that arose while I worked
-on projects funded by <acronym>NCAR</acronym>, <acronym>NASA</acronym>, and <acronym>ARM</acronym>.
-Thinking they might prove useful as tools or templates to others,
-it is my pleasure to provide them freely to the scientific community.
-Many users (most of whom I have never met) have encouraged the
-development of <acronym>NCO</acronym>.
-Thanks espcially to Jan Polcher, Keith Lindsay, Arlindo da Silva<!-- /@w -->,
-John Sheldon, and William Weibel for stimulating suggestions and
-correspondence.
-Your encouragment motivated me to complete the <cite>NCO User Guide</cite>.
-So if you like <acronym>NCO</acronym>, send me a note!
-I should<!-- /@w --> mention that <acronym>NCO</acronym> is not connected to or
-officially endorsed by Unidata, <acronym>ACD</acronym>, <acronym>ASP</acronym>,
-<acronym>CGD</acronym>, or Nike.<br>
-</p><br>
-<p>Charlie Zender<br>
-May 1997<br>
-Boulder, Colorado<br>
-</p>
-<br>
-<br>
-<p>Major feature improvements entitle me to write another Foreword.
-In the last five years a lot of work has been done to refine
-<acronym>NCO</acronym>.
-<a name="index-open-source"></a>
-<acronym>NCO</acronym> is now an open source project and appears to be much
-healthier for it.
-The list of illustrious institutions that do not endorse <acronym>NCO</acronym>
-continues to grow, and now includes <acronym>UCI</acronym>.<br>
-</p><br>
-<p>Charlie Zender<br>
-October 2000<br>
-Irvine, California<br>
-</p>
-<br>
-<br>
-<p>The most remarkable advances in <acronym>NCO</acronym> capabilities in the last
-few years are due to contributions from the Open Source community.
-Especially noteworthy are the contributions of Henry Butowsky and Rorik
-Peterson.<br>
-</p><br>
-<p>Charlie Zender<br>
-January 2003<br>
-Irvine, California<br>
-</p>
-<br>
-<br>
-<p><acronym>NCO</acronym> was generously supported from 2004–2008 by US
-National Science Foundation (<acronym>NSF</acronym>) grant
-<a href="http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0431203">IIS-0431203</a>.
-This support allowed me to maintain and extend core <acronym>NCO</acronym> code,
-and others to advance <acronym>NCO</acronym> in new directions:
-Gayathri Venkitachalam helped implement <acronym>MPI</acronym>;
-Harry Mangalam improved regression testing and benchmarking;
-Daniel Wang developed the server-side capability, <acronym>SWAMP</acronym>;
-and Henry Butowsky, a long-time contributor, developed <code>ncap2</code>.
-This support also led <acronym>NCO</acronym> to debut in professional journals
-and meetings.
-The personal and professional contacts made during this evolution have
-been immensely rewarding.<br>
-</p><br>
-<p>Charlie Zender<br>
-March 2008<br>
-Grenoble, France<br>
-</p>
-<br>
-<br>
-<p>The end of the <acronym>NSF</acronym> <acronym>SEI</acronym> grant in August, 2008 curtailed
-<acronym>NCO</acronym> development.
-Fortunately we could justify supporting Henry Butowsky on other research
-grants until May, 2010 while he developed the key <code>ncap2</code>
-features used in our climate research.
-And recently the <acronym>NASA</acronym> <acronym>ACCESS</acronym> program commenced
-funding us to support netCDF4 group functionality.
-Thus <acronym>NCO</acronym> will grow and evade bit-rot for the foreseeable
-future.
-</p>
-<p>I continue to receive with gratitude the thanks of <acronym>NCO</acronym> users
-at nearly every scientific meeting I attend.
-People introduce themselves, shake my hand and extol <acronym>NCO</acronym>,
-often effusively, while I grin in stupid embarassment.
-These exchanges lighten me like anti-gravity.
-Sometimes I daydream how many hours <acronym>NCO</acronym> has turned from grunt
-work to productive research for researchers world-wide, or from research
-into early happy-hours.
-It’s a cool feeling.
-</p>
-<br>
-<p>Charlie Zender<br>
-April, 2012<br>
-Irvine, California<br>
-</p>
-
-<a name="smr"></a> <!-- http://nco.sf.net/nco.html#smr --><hr>
-<a name="Summary"></a>
-<div class="header">
-<p>
-Next: <a href="#Introduction" accesskey="n" rel="next">Introduction</a>, Previous: <a href="#Foreword" accesskey="p" rel="prev">Foreword</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Summary-1"></a>
-<h2 class="unnumbered">Summary</h2>
-<a name="index-operators"></a>
-<a name="index-summary"></a>
-<p>This manual describes <acronym>NCO</acronym>, which stands for netCDF Operators.
-<acronym>NCO</acronym> is a suite of programs known as <em>operators</em>.
-Each operator is a standalone, command line program executed at the
-shell-level like, e.g., <code>ls</code> or <code>mkdir</code>.
-The operators take netCDF files (including <acronym>HDF5</acronym> files
-constructed using the netCDF <acronym>API</acronym>) as input, perform an
-operation (e.g., averaging or hyperslabbing), and produce a netCDF file
-as output.
-The operators are primarily designed to aid manipulation and analysis of
-data.
-The examples in this documentation are typical applications of the
-operators for processing climate model output.
-This stems from their origin, though the operators are as general as
-netCDF itself.
-</p>
-<a name="ntr"></a> <!-- http://nco.sf.net/nco.html#ntr --><hr>
-<a name="Introduction"></a>
-<div class="header">
-<p>
-Next: <a href="#Strategies" accesskey="n" rel="next">Strategies</a>, Previous: <a href="#Summary" accesskey="p" rel="prev">Summary</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Introduction-1"></a>
-<h2 class="chapter">1 Introduction</h2>
-<a name="index-introduction"></a>
-
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Availability" accesskey="1">Availability</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#How-to-Use-This-guide" accesskey="2">How to Use This guide</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Compatability" accesskey="3">Compatability</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Symbolic-Links" accesskey="4">Symbolic Links</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Libraries" accesskey="5">Libraries</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support" accesskey="6">netCDF2/3/4 and HDF4/5 Support</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Help-Requests-and-Bug-Reports" accesskey="7">Help Requests and Bug Reports</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Availability"></a>
-<div class="header">
-<p>
-Next: <a href="#How-to-Use-This-guide" accesskey="n" rel="next">How to Use This guide</a>, Previous: <a href="#Introduction" accesskey="p" rel="prev">Introduction</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Availability-1"></a>
-<h3 class="section">1.1 Availability</h3>
-<a name="index-NCO-availability"></a>
-<a name="index-source-code"></a>
-<p>The complete <acronym>NCO</acronym> source distribution is currently distributed
-as a <em>compressed tarfile</em> from
-<a href="http://sf.net/projects/nco">http://sf.net/projects/nco</a>
-and from
-<a href="http://dust.ess.uci.edu/nco/nco.tar.gz">http://dust.ess.uci.edu/nco/nco.tar.gz</a>.
-The compressed tarfile must be uncompressed and untarred before building
-<acronym>NCO</acronym>.
-Uncompress the file with ‘<samp>gunzip nco.tar.gz</samp>’.
-Extract the source files from the resulting tarfile with ‘<samp>tar -xvf
-nco.tar</samp>’.
-<acronym>GNU</acronym> <code>tar</code> lets you perform both operations in one step
-with ‘<samp>tar -xvzf nco.tar.gz</samp>’.
-</p>
-<a name="index-documentation"></a>
-<a name="index-WWW-documentation"></a>
-<a name="index-on_002dline-documentation"></a>
-<a name="index-HTML"></a>
-<a name="index-TeXinfo"></a>
-<a name="index-Info"></a>
-<a name="index-User-Guide"></a>
-<a name="index-NCO-User-Guide"></a>
-<p>The documentation for <acronym>NCO</acronym> is called the
-<cite>NCO User Guide</cite>.
-The <cite>User Guide</cite> is available in <acronym>PDF</acronym>, Postscript,
-<acronym>HTML</acronym>, <acronym>DVI</acronym>, TeXinfo, and Info formats.
-These formats are included in the source distribution in the files
-<samp>nco.pdf</samp>, <samp>nco.ps</samp>, <samp>nco.html</samp>, <samp>nco.dvi</samp>,
-<samp>nco.texi</samp>, and <samp>nco.info*</samp>, respectively.
-All the documentation descends from a single source file,
-<samp>nco.texi</samp>
-<a name="DOCF1" href="#FOOT1"><sup>1</sup></a>.
-Hence the documentation in every format is very similar.
-However, some of the complex mathematical expressions needed to describe
-<code>ncwa</code> can only be displayed in <acronym>DVI</acronym>, Postscript, and
-<acronym>PDF</acronym> formats.
-</p>
-<a name="index-publications"></a>
-<a name="index-presentations"></a>
-<p>A complete list of papers and publications on/about <acronym>NCO</acronym>
-is available on the <acronym>NCO</acronym> homepage.
-Most of these are freely available.
-The primary refereed publications are ZeM06 and Zen08.
-These contain copyright restrictions which limit their redistribution,
-but they are freely available in preprint form from the <acronym>NCO</acronym>.
-</p>
-<a name="index-NCO-homepage"></a>
-<p>If you want to quickly see what the latest improvements in <acronym>NCO</acronym>
-are (without downloading the entire source distribution), visit the
-<acronym>NCO</acronym> homepage at
-<a href="http://nco.sf.net">http://nco.sf.net</a>.
-The <acronym>HTML</acronym> version of the <cite>User Guide</cite> is also available
-online through the World Wide Web at <acronym>URL</acronym>
-<a href="http://nco.sf.net/nco.html">http://nco.sf.net/nco.html</a>.
-<a name="index-netCDF"></a>
-To build and use <acronym>NCO</acronym>, you must have netCDF installed.
-The netCDF homepage is
-<a href="http://www.unidata.ucar.edu/packages/netcdf">http://www.unidata.ucar.edu/packages/netcdf</a>.
-</p>
-<p>New <acronym>NCO</acronym> releases are announced on the netCDF list
-and on the <code>nco-announce</code> mailing list
-<a href="http://lists.sf.net/mailman/listinfo/nco-announce">http://lists.sf.net/mailman/listinfo/nco-announce</a>.
-</p>
-
-<hr>
-<a name="How-to-Use-This-guide"></a>
-<div class="header">
-<p>
-Next: <a href="#Compatability" accesskey="n" rel="next">Compatability</a>, Previous: <a href="#Availability" accesskey="p" rel="prev">Availability</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="How-to-Use-This-Guide"></a>
-<h3 class="section">1.2 How to Use This Guide</h3>
-<a name="index-contents"></a>
-<a name="index-introduction-1"></a>
-<p>Detailed instructions about
-<a href="http://nco.sf.net/#Source">how to download the newest version</a>,
-and <a href="http://nco.sf.net/#bld">how to complie source code</a>,
-as well as a <a href="http://nco.sf.net/#FAQ"><acronym>FAQ</acronym></a> and
-descriptions of <a href="http://nco.sf.net/#bug">Known Problems</a> etc.
-are on our homepage
-(<a href="http://nco.sf.net/">http://nco.sf.net/</a>).
-</p>
-<p>There are twelve operators in the current version (4.4.8).
-The function of each is explained in <a href="#Reference-Manual">Reference Manual</a>.
-Many of the tasks that <acronym>NCO</acronym> can accomplish are described during
-the explanation of common <acronym>NCO</acronym> Features (see <a href="#Shared-features">Shared features</a>).
-More specific use examples for each operator can be seen by visiting the
-operator-specific examples in the <a href="#Reference-Manual">Reference Manual</a>.
-These can be found directly by prepending the operator name with the
-<code>xmp_</code> tag, e.g., <a href="http://nco.sf.net/nco.html#xmp_ncks">http://nco.sf.net/nco.html#xmp_ncks</a>.
-Also, users can type the operator name on the shell command line to
-see all the available options, or type, e.g., ‘<samp>man ncks</samp>’ to see
-a help man-page.
-</p>
-<p><acronym>NCO</acronym> is a command-line language.
-You may either use an operator after the prompt (e.g., ‘<samp>$</samp>’ here),
-like,
-</p><div class="example">
-<pre class="example">$ <code>operator</code> <samp>[options]</samp> <samp>input</samp> <samp>[output]</samp>
-</pre></div>
-<p>or write all commands lines into a shell script, as in
-the <acronym>CMIP5</acronym> Example (see <a href="#CMIP5-Example">CMIP5 Example</a>).
-</p>
-<p>If you are new to <acronym>NCO</acronym>, the Quick Start (see <a href="#Quick-Start">Quick Start</a>)
-shows simple examples about how to use <acronym>NCO</acronym> on different kinds
-of data files.
-More detailed “real-world” examples are in the
-<a href="#CMIP5-Example"><acronym>CMIP5</acronym> Example</a>.
-The <a href="#General-Index">Index</a> is presents multiple keyword entries for
-the same subject.
-If these resources do not help enough, please
-see <a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a>.
-</p>
-<hr>
-<a name="Compatability"></a>
-<div class="header">
-<p>
-Next: <a href="#Symbolic-Links" accesskey="n" rel="next">Symbolic Links</a>, Previous: <a href="#How-to-Use-This-guide" accesskey="p" rel="prev">How to Use This guide</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Operating-systems-compatible-with-NCO"></a>
-<h3 class="section">1.3 Operating systems compatible with <acronym>NCO</acronym></h3>
-<a name="index-OS"></a>
-<a name="index-IBM"></a>
-<a name="index-NEC"></a>
-<a name="index-SGI"></a>
-<a name="index-HP"></a>
-<a name="index-DEC"></a>
-<a name="index-PGI"></a>
-<a name="index-Cray"></a>
-<a name="index-Digital"></a>
-<a name="index-Sun"></a>
-<a name="index-Intel"></a>
-<a name="index-Comeau"></a>
-<a name="index-Compaq"></a>
-<a name="index-Macintosh"></a>
-<a name="index-Microsoft"></a>
-<a name="index-Windows"></a>
-<a name="index-PathScale"></a>
-<a name="index-QLogic"></a>
-<a name="index-compatability"></a>
-<a name="index-portability"></a>
-<a name="index-installation"></a>
-<p>In its time on Earth, <acronym>NCO</acronym> has been successfully ported and
-tested on so many 32- and 64-bit platforms that if we did not write
-them down here we would forget their names:
-<acronym>IBM AIX</acronym> 4.x, 5.x,
-FreeBSD 4.x,
-<acronym>GNU</acronym>/Linux 2.x, LinuxPPC, LinuxAlpha, LinuxARM, LinuxSparc64,
-LinuxAMD64,
-<acronym>SGI IRIX</acronym> 5.x and 6.x,
-MacOS X<!-- /@w --> 10.x,
-<acronym>DEC OSF</acronym>,
-<acronym>NEC</acronym> Super-UX 10.x,
-Sun SunOS 4.1.x, Solaris 2.x,
-<acronym>Cray UNICOS</acronym> 8.x–10.x,
-and Microsoft Windows (95, 98, <acronym>NT</acronym>, 2000, <acronym>XP</acronym>, Vista,
-7, 8, 10).
-If you port the code to a new operating system, please send me a note
-and any patches you required.
-</p>
-<a name="index-UNIX"></a>
-<a name="index-Unidata"></a>
-<a name="index-UDUnits"></a>
-<p>The major prerequisite for installing <acronym>NCO</acronym> on a particular
-platform is the successful, prior installation of the netCDF library
-(and, as of 2003, the UDUnits library).
-Unidata has shown a commitment to maintaining netCDF and UDUnits on all
-popular <acronym>UNIX</acronym> platforms, and is moving towards full support for
-the Microsoft Windows operating system (<acronym>OS</acronym>).
-Given this, the only difficulty in implementing <acronym>NCO</acronym> on a
-particular platform is standardization of various C<!-- /@w -->-language API
-system calls.
-<acronym>NCO</acronym> code is tested for <acronym>ANSI</acronym> compliance by
-compiling with C99 compilers<!-- /@w --> including those from
-<a name="index-CC"></a>
-<a name="index-c_002b_002b"></a>
-<a name="index-cc"></a>
-<a name="index-clang"></a>
-<a name="index-como"></a>
-<a name="index-cxx"></a>
-<a name="index-gcc"></a>
-<a name="index-g_002b_002b"></a>
-<a name="index-icc"></a>
-<a name="index-MVS"></a>
-<a name="index-pgcc"></a>
-<a name="index-pgCC"></a>
-<a name="index-pathcc"></a>
-<a name="index-pathCC"></a>
-<a name="index-xlC"></a>
-<a name="index-xlc"></a>
-<acronym>GNU</acronym> (‘<samp>gcc -std=c99 -pedantic -D_BSD_SOURCE -D_POSIX_SOURCE</samp>’ -Wall)
-<a name="DOCF2" href="#FOOT2"><sup>2</sup></a>,
-Comeau Computing (‘<samp>como --c99</samp>’),
-Cray (‘<samp>cc</samp>’),
-<acronym>HP</acronym>/Compaq/<acronym>DEC</acronym> (‘<samp>cc</samp>’),
-<acronym>IBM</acronym> (‘<samp>xlc -c -qlanglvl=extc99</samp>’),
-Intel (‘<samp>icc -std=c99</samp>’),
-<a name="index-LLVM"></a>
-<acronym>LLVM</acronym> (‘<samp>clang</samp>’),
-<acronym>NEC</acronym> (‘<samp>cc</samp>’),
-PathScale (QLogic) (‘<samp>pathcc -std=c99</samp>’),
-<acronym>PGI</acronym> (‘<samp>pgcc -c9x</samp>’),
-<acronym>SGI</acronym> (‘<samp>cc -c99</samp>’),
-and
-Sun (‘<samp>cc</samp>’).
-<a name="index-C_002b_002b"></a>
-<a name="index-ISO"></a>
-<a name="index-libnco"></a>
-<acronym>NCO</acronym> (all commands and the <code>libnco</code> library) and
-the C++ interface to netCDF (called <code>libnco_c++</code>) comply with
-the <acronym>ISO</acronym> C++ standards as implemented by
-Comeau Computing (‘<samp>como</samp>’),
-Cray (‘<samp>CC</samp>’),
-<acronym>GNU</acronym> (‘<samp>g++ -Wall</samp>’),
-<acronym>HP</acronym>/Compaq/<acronym>DEC</acronym> (‘<samp>cxx</samp>’),
-<acronym>IBM</acronym> (‘<samp>xlC</samp>’),
-Intel (‘<samp>icc</samp>’),
-Microsoft (‘<samp>MVS</samp>’),
-<acronym>NEC</acronym> (‘<samp>c++</samp>’),
-PathScale (Qlogic) (‘<samp>pathCC</samp>’),
-<acronym>PGI</acronym> (‘<samp>pgCC</samp>’),
-<acronym>SGI</acronym> (‘<samp>CC -LANG:std</samp>’),
-and
-Sun (‘<samp>CC -LANG:std</samp>’).
-<a name="index-Makefile"></a>
-See <samp>nco/bld/Makefile</samp> and <samp>nco/src/nco_c++/Makefile.old</samp> for
-more details and exact settings.
-</p>
-<a name="index-ANSI"></a>
-<a name="index-C89"></a>
-<a name="index-printf"></a>
-<p>Until recently (and not even yet), <acronym>ANSI</acronym>-compliant has meant
-compliance with the 1989 <acronym>ISO</acronym> C-standard, usually called C89 (with
-minor revisions made in 1994 and 1995).
-C89 lacks variable-size arrays, restricted pointers, some useful
-<code>printf</code> formats, and many mathematical special functions.
-<a name="index-C99"></a>
-These are valuable features of C99, the 1999 <acronym>ISO</acronym> C-standard.
-<acronym>NCO</acronym> is C99-compliant where possible and C89-compliant where
-necessary.
-Certain branches in the code are required to satisfy the native
-<acronym>SGI</acronym> and SunOS C compilers<!-- /@w -->, which are strictly <acronym>ANSI</acronym>
-C89 compliant, and cannot benefit from C99 features.
-However, C99 features are fully supported by modern <acronym>AIX</acronym>,
-<acronym>GNU</acronym>, Intel, <acronym>NEC</acronym>, Solaris, and <acronym>UNICOS</acronym>
-compilers.
-<acronym>NCO</acronym> requires a C99-compliant compiler as of <acronym>NCO</acronym>
-version 2.9.8<!-- /@w -->, released in August, 2004.
-</p>
-<p>The most time-intensive portion of <acronym>NCO</acronym> execution is spent in
-arithmetic operations, e.g., multiplication, averaging, subtraction.
-These operations were performed in Fortran by default until August,
-1999.
-This was a design decision based on the relative speed of Fortran-based
-object code vs. C-based object code in late 1994.
-C compiler<!-- /@w --> vectorization capabilities have dramatically improved
-since 1994.
-We have accordingly replaced all Fortran subroutines with C functions<!-- /@w -->.
-This greatly simplifies the task of building <acronym>NCO</acronym> on nominally
-unsupported platforms.
-<a name="index-C-language"></a>
-As of August 1999, <acronym>NCO</acronym> built entirely in C<!-- /@w --> by default.
-This allowed <acronym>NCO</acronym> to compile on any machine with an
-<acronym>ANSI</acronym> C compiler<!-- /@w -->.
-<a name="index-C99-1"></a>
-<a name="index-C89-1"></a>
-<a name="index-restrict"></a>
-In August 2004, the first C99 feature, the <code>restrict</code> type
-qualifier, entered <acronym>NCO</acronym> in version 2.9.8.
-C compilers<!-- /@w --> can obtain better performance with C99 restricted
-pointers since they inform the compiler when it may make Fortran-like
-assumptions regarding pointer contents alteration.
-Subsequently, <acronym>NCO</acronym> requires a C99 compiler to build correctly
-<a name="DOCF3" href="#FOOT3"><sup>3</sup></a>.
-</p>
-<a name="index-GSL"></a>
-<a name="index-ncap2-4"></a>
-<p>In January 2009, <acronym>NCO</acronym> version 3.9.6 was the first to link
-to the <acronym>GNU</acronym> Scientific Library (<acronym>GSL</acronym>).
-<acronym>GSL</acronym> must be version 1.4<!-- /@w --> or later.
-<acronym>NCO</acronym>, in particular <code>ncap2</code>, uses the <acronym>GSL</acronym>
-special function library to evaluate geoscience-relevant mathematics
-such as Bessel functions, Legendre polynomials, and incomplete gamma
-functions (see <a href="#GSL-special-functions">GSL special functions</a>).
-</p>
-<a name="index-gamma"></a>
-<p>In June 2005, <acronym>NCO</acronym> version 3.0.1 began to take advantage
-of C99 mathematical special functions.
-These include the standarized gamma function (called <code>tgamma()</code>
-for “true gamma”).
-<a name="index-automagic"></a>
-<acronym>NCO</acronym> automagically takes advantage of some <acronym>GNU</acronym>
-Compiler Collection (<acronym>GCC</acronym>) extensions to <acronym>ANSI</acronym> C<!-- /@w -->.
-</p>
-<p>As of July 2000 and <acronym>NCO</acronym> version 1.2<!-- /@w -->, <acronym>NCO</acronym> no
-longer performs arithmetic operations in Fortran.
-We decided to sacrifice executable speed for code maintainability.
-Since no objective statistics were ever performed to quantify
-the difference in speed between the Fortran and C code<!-- /@w -->,
-the performance penalty incurred by this decision is unknown.
-Supporting Fortran involves maintaining two sets of routines for every
-arithmetic operation.
-The <code>USE_FORTRAN_ARITHMETIC</code> flag is still retained in the
-<samp>Makefile</samp>.
-The file containing the Fortran code, <samp>nco_fortran.F</samp>, has been
-deprecated but a volunteer (Dr. Frankenstein<!-- /@w -->?) could resurrect it.
-If you would like to volunteer to maintain <samp>nco_fortran.F</samp> please
-contact me.
-</p>
-
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Windows-Operating-System" accesskey="1">Windows Operating System</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="wnd"></a> <!-- http://nco.sf.net/nco.html#wnd -->
-<a name="windows"></a> <!-- http://nco.sf.net/nco.html#windows -->
-<a name="qt"></a> <!-- http://nco.sf.net/nco.html#qt --><hr>
-<a name="Windows-Operating-System"></a>
-<div class="header">
-<p>
-Previous: <a href="#Compatability" accesskey="p" rel="prev">Compatability</a>, Up: <a href="#Compatability" accesskey="u" rel="up">Compatability</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Compiling-NCO-for-Microsoft-Windows-OS"></a>
-<h4 class="subsection">1.3.1 Compiling <acronym>NCO</acronym> for Microsoft Windows <acronym>OS</acronym></h4>
-<a name="index-Windows-1"></a>
-<a name="index-Microsoft-1"></a>
-<a name="index-XP-_0028Microsoft-operating-system_0029"></a>
-<a name="index-NT-_0028Microsoft-operating-system_0029"></a>
-<a name="index-Vista-_0028Microsoft-operating-system_0029"></a>
-<a name="index-MVS-1"></a>
-<a name="index-Microsoft-Visual-Studio"></a>
-
-<p><acronym>NCO</acronym> has been successfully ported and tested on most Microsoft
-Windows operating systems including: <acronym>XP</acronym> SP2/Vista/7.
-Support is provided for compiling either native Windows executables,
-using the Microsoft Visual Studio 2010 Compiler, or with Cygwin, the
-<acronym>UNIX</acronym>-emulating compatibility layer with the <acronym>GNU</acronym> toolchain.
-The switches necessary to accomplish both are included in the standard
-distribution of <acronym>NCO</acronym>.
-</p>
-<a name="index-Qt"></a>
-<a name="index-C99-2"></a>
-<p>Using Microsoft Visual Studio (<acronym>MVS</acronym>), one must build
-<acronym>NCO</acronym> with the C++ compiler since <acronym>MVS</acronym> does not support C99.
-Qt, a convenient integrated development environment, was used to convert
-the project files to <acronym>MVS</acronym> format.
-The Qt files themselves are distributed in the <samp>nco/qt</samp> directory.
-</p>
-<p>Using the freely available Cygwin (formerly gnu-win32) development
-environment
-<a name="DOCF4" href="#FOOT4"><sup>4</sup></a>, the compilation process is very similar to
-installing <acronym>NCO</acronym> on a <acronym>UNIX</acronym> system.
-<a name="index-preprocessor-tokens"></a>
-<a name="index-Cygwin"></a>
-<a name="index-gnu_002dwin32"></a>
-<a name="index-WIN32"></a>
-<a name="index-GNUmakefile"></a>
-<a name="index-Makefile-1"></a>
-<a name="index-f90"></a>
-Set the <code>PVM_ARCH</code> preprocessor token to <code>WIN32</code>.
-Note that defining <code>WIN32</code> has the side effect of disabling
-Internet features of <acronym>NCO</acronym> (see below).
-<acronym>NCO</acronym> should now build like it does on <acronym>UNIX</acronym>.
-</p>
-<a name="index-UNIX-1"></a>
-<a name="index-getuid"></a>
-<a name="index-gethostname"></a>
-<a name="index-_003carpa_002fnameser_002eh_003e"></a>
-<a name="index-_003cresolv_002eh_003e"></a>
-<p>The least portable section of the code is the use of standard
-<acronym>UNIX</acronym> and Internet protocols (e.g., <code>ftp</code>, <code>rcp</code>,
-<code>scp</code>, <code>sftp</code>, <code>getuid</code>, <code>gethostname</code>, and header
-files <samp><arpa/nameser.h></samp> and
-<samp><resolv.h></samp>).
-<a name="index-ftp"></a>
-<a name="index-sftp"></a>
-<a name="index-rcp"></a>
-<a name="index-scp"></a>
-<a name="index-SSH"></a>
-<a name="index-remote-files"></a>
-Fortunately, these <acronym>UNIX</acronym>-y calls are only invoked by the single
-<acronym>NCO</acronym> subroutine which is responsible for retrieving files
-stored on remote systems (see <a href="#Remote-storage">Remote storage</a>).
-In order to support <acronym>NCO</acronym> on the Microsoft Windows platforms,
-this single feature was disabled (on Windows <acronym>OS</acronym> only).
-This was required by Cygwin 18.x<!-- /@w -->—newer versions of Cygwin may
-support these protocols (let me know if this is the case).
-The <acronym>NCO</acronym> operators should behave identically on Windows and
-<acronym>UNIX</acronym> platforms in all other respects.
-</p>
-<a name="sym"></a> <!-- http://nco.sf.net/nco.html#sym --><hr>
-<a name="Symbolic-Links"></a>
-<div class="header">
-<p>
-Next: <a href="#Libraries" accesskey="n" rel="next">Libraries</a>, Previous: <a href="#Compatability" accesskey="p" rel="prev">Compatability</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Symbolic-Links-1"></a>
-<h3 class="section">1.4 Symbolic Links</h3>
-<a name="index-symbolic-links"></a>
-<p><acronym>NCO</acronym> relies on a common set of underlying algorithms.
-To minimize duplication of source code, multiple operators sometimes
-share the same underlying source.
-This is accomplished by symbolic links from a single underlying
-executable program to one or more invoked executable names.
-For example, <code>nces</code> and <code>ncrcat</code> are symbolically linked
-to the <code>ncra</code> executable.
-The <code>ncra</code> executable behaves slightly differently based on its
-invocation name (i.e., ‘<samp>argv[0]</samp>’), which can be
-<code>nces</code>, <code>ncra</code>, or <code>ncrcat</code>.
-Logically, these are three different operators that happen to share
-the same executable.
-</p>
-<a name="index-Cygwin-1"></a>
-<a name="index-synonym"></a>
-<a name="index-pseudonym"></a>
-<a name="index-_002d_002dpseudonym"></a>
-<p>For historical reasons, and to be more user friendly, multiple synonyms
-(or pseudonyms) may refer to the same operator invoked with different
-switches.
-For example, <code>ncdiff</code> is the same as <code>ncbo</code> and
-<code>ncpack</code> is the same as <code>ncpdq</code>.
-We implement the symbolic links and synonyms by the executing the
-following <acronym>UNIX</acronym> commands in the directory where the
-<acronym>NCO</acronym> executables are installed.
-</p><div class="example">
-<pre class="example">ln -s -f ncbo ncdiff # ncbo --op_typ='+'
-ln -s -f ncra nces # ncra --pseudonym='nces'
-ln -s -f ncra ncrcat # ncra --pseudonym='ncrcat'
-ln -s -f ncbo ncadd # ncbo --op_typ='+'
-ln -s -f ncbo ncsubtract # ncbo --op_typ='-'
-ln -s -f ncbo ncmultiply # ncbo --op_typ='*'
-ln -s -f ncbo ncdivide # ncbo --op_typ='/'
-ln -s -f ncpdq ncpack # ncpdq
-ln -s -f ncpdq ncunpack # ncpdq --unpack
-# NB: Windows/Cygwin executable/link names have '.exe' suffix, e.g.,
-ln -s -f ncbo.exe ncdiff.exe
-...
-</pre></div>
-<p>The imputed command called by the link is given after the comment.
-As can be seen, some these links impute the passing of a command line
-argument to further modify the behavior of the underlying executable.
-For example, <code>ncdivide</code> is a pseudonym for
-<code>ncbo --op_typ='/'</code>.
-</p>
-<a name="lbr"></a> <!-- http://nco.sf.net/nco.html#lbr --><hr>
-<a name="Libraries"></a>
-<div class="header">
-<p>
-Next: <a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support" accesskey="n" rel="next">netCDF2/3/4 and HDF4/5 Support</a>, Previous: <a href="#Symbolic-Links" accesskey="p" rel="prev">Symbolic Links</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Libraries-1"></a>
-<h3 class="section">1.5 Libraries</h3>
-<a name="index-libraries"></a>
-<a name="index-LD_005fLIBRARY_005fPATH"></a>
-<a name="index-dynamic-linking"></a>
-<a name="index-static-linking"></a>
-<p>Like all executables, the <acronym>NCO</acronym> operators can be built using dynamic
-linking.
-<a name="index-performance"></a>
-<a name="index-operator-speed"></a>
-<a name="index-speed"></a>
-<a name="index-execution-time"></a>
-This reduces the size of the executable and can result in significant
-performance enhancements on multiuser systems.
-Unfortunately, if your library search path (usually the
-<code>LD_LIBRARY_PATH</code> environment variable) is not set correctly, or if
-the system libraries have been moved, renamed, or deleted since
-<acronym>NCO</acronym> was installed, it is possible <acronym>NCO</acronym> operators
-will fail with a message that they cannot find a dynamically loaded (aka
-<em>shared object</em> or ‘<samp>.so</samp>’) library.
-This will produce a distinctive error message, such as
-‘<samp>ld.so.1: /usr/local/bin/nces: fatal: libsunmath.so.1: can't
-open file: errno=2</samp>’.
-If you received an error message like this, ask your system
-administrator to diagnose whether the library is truly missing
-<a name="DOCF5" href="#FOOT5"><sup>5</sup></a>, or whether you
-simply need to alter your library search path.
-As a final remedy, you may re-compile and install <acronym>NCO</acronym> with all
-operators statically linked.
-</p>
-<hr>
-<a name="netCDF2_002f3_002f4-and-HDF4_002f5-Support"></a>
-<div class="header">
-<p>
-Next: <a href="#Help-Requests-and-Bug-Reports" accesskey="n" rel="next">Help Requests and Bug Reports</a>, Previous: <a href="#Libraries" accesskey="p" rel="prev">Libraries</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="netCDF2_002f3_002f4-and-HDF4_002f5-Support-1"></a>
-<h3 class="section">1.6 netCDF2/3/4 and HDF4/5 Support</h3>
-<a name="index-netCDF2"></a>
-<a name="index-netCDF3"></a>
-<p>netCDF version 2<!-- /@w --> was released in 1993.
-<acronym>NCO</acronym> (specifically <code>ncks</code>) began soon after this in 1994.
-netCDF 3.0<!-- /@w --> was released in 1996, and we were not exactly eager to
-convert all code to the newer, less tested netCDF implementation.
-One netCDF3<!-- /@w --> interface call (<code>nc_inq_libvers</code>) was added to
-<acronym>NCO</acronym> in January, 1998, to aid in maintainance and debugging.
-In March, 2001, the final <acronym>NCO</acronym> conversion to netCDF3<!-- /@w -->
-was completed (coincidentally on the same day netCDF 3.5<!-- /@w --> was
-released).
-<acronym>NCO</acronym> versions 2.0<!-- /@w --> and higher are built with the
-<code>-DNO_NETCDF_2</code> flag to ensure no netCDF2<!-- /@w --> interface calls
-are used.
-<a name="index-NO_005fNETCDF_005f2"></a>
-</p>
-<a name="index-HDF"></a>
-<a name="index-Hierarchical-Data-Format"></a>
-<a name="index-Mike-Folk"></a>
-<p>However, the ability to compile <acronym>NCO</acronym> with only netCDF2<!-- /@w -->
-calls is worth maintaining because <acronym>HDF</acronym> version 4<!-- /@w -->,
-aka <acronym>HDF4</acronym> or simply <acronym>HDF</acronym>,
-<a name="DOCF6" href="#FOOT6"><sup>6</sup></a>
-(available from <a href="http://hdfgroup.org">HDF</a>)
-supports only the netCDF2<!-- /@w --> library calls
-(see <a href="http://hdfgroup.org/UG41r3_html/SDS_SD.fm12.html#47784">http://hdfgroup.org/UG41r3_html/SDS_SD.fm12.html#47784</a>).
-There are two versions of <acronym>HDF</acronym>.
-Currently <acronym>HDF</acronym> version 4.x<!-- /@w --> supports the full netCDF2<!-- /@w -->
-<acronym>API</acronym> and thus <acronym>NCO</acronym> version 1.2.x<!-- /@w -->.
-If <acronym>NCO</acronym> version 1.2.x<!-- /@w --> (or earlier) is built with only
-netCDF2<!-- /@w --> calls then all <acronym>NCO</acronym> operators should work with
-<acronym>HDF4</acronym> files as well as netCDF files
-<a name="DOCF7" href="#FOOT7"><sup>7</sup></a>.
-<a name="index-NETCDF2_005fONLY"></a>
-The preprocessor token <code>NETCDF2_ONLY</code> exists
-in <acronym>NCO</acronym> version 1.2.x<!-- /@w --> to eliminate all netCDF3<!-- /@w -->
-calls.
-Only versions of <acronym>NCO</acronym> numbered 1.2.x and earlier have this
-capability.
-</p>
-<a name="index-Unidata-1"></a>
-<a name="index-NCSA"></a>
-<a name="index-netCDF4"></a>
-<a name="index-HDF5"></a>
-<p><acronym>HDF</acronym> version 5<!-- /@w --> became available in 1999, but did not
-support netCDF (or, for that matter, Fortran) as of December 1999.
-By early 2001, <acronym>HDF5</acronym> did support Fortran90.
-Thanks to an <acronym>NSF</acronym>-funded “harmonization” partnership,
-<acronym>HDF</acronym> began to fully support the netCDF3<!-- /@w --> read interface
-(which is employed by <acronym>NCO</acronym> 2.x<!-- /@w --> and later).
-In 2004, Unidata and <acronym>THG</acronym> began a project to implement
-the <acronym>HDF5</acronym> features necessary to support the netCDF API.
-<acronym>NCO</acronym> version 3.0.3 added support for reading/writing
-netCDF4-formatted <acronym>HDF5</acronym> files in October, 2005.
-See <a href="#File-Formats-and-Conversion">File Formats and Conversion</a> for more details.
-</p>
-<p>HDF support for netCDF was completed with HDF5 version
-version 1.8<!-- /@w --> in 2007.
-The netCDF front-end that uses this <acronym>HDF5</acronym> back-end
-was completed and released soon after as netCDF version 4<!-- /@w -->.
-Download it from the
-<a href="http://my.unidata.ucar.edu/content/software/netcdf/netcdf-4">netCDF4</a>
-website.
-</p>
-<a name="nco4"></a> <!-- http://nco.sf.net/nco.html#nco4 --><p><acronym>NCO</acronym> version 3.9.0, released in May, 2007, added support for
-all netCDF4 atomic data types except <code>NC_STRING</code>.
-Support for <code>NC_STRING</code>, including ragged arrays of strings,
-was finally added in version 3.9.9, released in June, 2009.
-Support for additional netCDF4 features has been incremental.
-We add one netCDF4 feature at a time.
-You must build <acronym>NCO</acronym> with netCDF4 to obtain this support.
-</p>
-<a name="index-NC_005fUBYTE"></a>
-<a name="index-NC_005fUSHORT"></a>
-<a name="index-NC_005fUINT"></a>
-<a name="index-NC_005fINT64"></a>
-<a name="index-NC_005fUINT64"></a>
-<p><acronym>NCO</acronym> supports many netCDF4 features including atomic data
-types, Lempel-Ziv compression (deflation), chunking, and groups.
-The new atomic data types are <code>NC_UBYTE</code>, <code>NC_USHORT</code>,
-<code>NC_UINT</code>, <code>NC_INT64</code>, and <code>NC_UINT64</code>.
-Eight-byte integer support is an especially useful improvement from
-netCDF3.
-All <acronym>NCO</acronym> operators support these types, e.g., <code>ncks</code>
-copies and prints them, <code>ncra</code> averages them, and
-<code>ncap2</code> processes algebraic scripts with them.
-<code>ncks</code> prints compression information, if any, to screen.
-</p>
-<a name="index-deflation"></a>
-<p><acronym>NCO</acronym> version 3.9.1 (June, 2007) added support for netCDF4
-Lempel-Ziv deflation.
-Lempel-Ziv deflation is a lossless compression technique.
-See <a href="#Deflation">Deflation</a> for more details.
-</p>
-<a name="index-chunking"></a>
-<p><acronym>NCO</acronym> version 3.9.9 (June, 2009) added support for netCDF4
-chunking in <code>ncks</code> and <code>ncecat</code>.
-<acronym>NCO</acronym> version 4.0.4 (September, 2010) completed support for
-netCDF4 chunking in the remaining operators.
-See <a href="#Chunking">Chunking</a> for more details.
-</p>
-<a name="index-groups"></a>
-<p><acronym>NCO</acronym> version 4.2.2 (October, 2012) added support for netCDF4
-groups in <code>ncks</code> and <code>ncecat</code>.
-Group support for these operators was complete (e.g., regular
-expressions to select groups and Group Path Editing) as of
-<acronym>NCO</acronym> version 4.2.6 (March, 2013).
-See <a href="#Group-Path-Editing">Group Path Editing</a> for more details.
-Group support for all other operators was finished in the
-<acronym>NCO</acronym> version 4.3.x series completed in December, 2013.
-</p>
-<a name="index-broadcasting-groups"></a>
-<p>Support for netCDF4 in the first arithmetic operator, <code>ncbo</code>,
-was introduced in <acronym>NCO</acronym> version 4.3.0 (March, 2013).
-<acronym>NCO</acronym> version 4.3.1 (May, 2013) completed this support and
-introduced the first example of automatic group broadcasting.
-See <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a> for more details.
-</p>
-<a name="index-HDF5-1"></a>
-<a name="index-_002d4"></a>
-<a name="index-_002d3"></a>
-<p>netCDF4-enabled <acronym>NCO</acronym> handles netCDF3 files without change.
-In addition, it automagically handles netCDF4 (<acronym>HDF5</acronym>) files:
-If you feed <acronym>NCO</acronym> netCDF3 files, it produces netCDF3 output.
-If you feed <acronym>NCO</acronym> netCDF4 files, it produces netCDF4 output.
-Use the handy-dandy ‘<samp>-4</samp>’ switch to request netCDF4 output from
-netCDF3 input, i.e., to convert netCDF3 to netCDF4.
-See <a href="#File-Formats-and-Conversion">File Formats and Conversion</a> for more details.
-</p>
-<a name="hdf4"></a> <!-- http://nco.sf.net/nco.html#hdf4 -->
-<a name="HDF4"></a> <!-- http://nco.sf.net/nco.html#HDF4 --><a name="index-HDF4"></a>
-<a name="index-_002d_002dhdf4"></a>
-<p>When linked to a netCDF library that was built with <acronym>HDF4</acronym>
-support
-<a name="DOCF8" href="#FOOT8"><sup>8</sup></a>,
-<acronym>NCO</acronym> automatically supports reading <acronym>HDF4</acronym>
-files and writing them as netCDF3/netCDF4/<acronym>HDF5</acronym> files.
-<acronym>NCO</acronym> can only write through the netCDF <acronym>API</acronym>, which
-can only write netCDF3/netCDF4/<acronym>HDF5</acronym> files.
-So <acronym>NCO</acronym> can <em>read</em> <acronym>HDF4</acronym> files, perform
-manipulations and calculations, and then it must <em>write</em> the
-results in netCDF format.
-</p>
-<p><acronym>NCO</acronym> support for <acronym>HDF4</acronym> has been quite functional since
-December, 2013.
-For best results install <acronym>NCO</acronym> versions 4.4.0 or later on top of
-netCDF versions 4.3.1 or later.
-Getting to this point has been an iterative effort where Unidata
-improved netCDF library capabilities in response to our requests.
-<acronym>NCO</acronym> versions 4.3.6 and earlier do not explicitly support
-<acronym>HDF4</acronym>, yet should work with <acronym>HDF4</acronym> if compiled with
-a version of netCDF (4.3.2 or later?) that does not unexpectedly die
-when probing <acronym>HDF4</acronym> files with standard netCDF calls.
-<acronym>NCO</acronym> versions 4.3.7–4.3.9 (October–December, 2013)
-use a special flag to workaround netCDF <acronym>HDF4</acronym> issues.
-The user must tell these versions of <acronym>NCO</acronym> that an input file is
-<acronym>HDF4</acronym> format by using the ‘<samp>--hdf4</samp>’ switch.
-</p>
-<a name="index-HDF4_005fUNKNOWN"></a>
-<p>When compiled with netCDF version 4.3.1 (20140116) or later,
-<acronym>NCO</acronym> versions 4.4.0 (January, 2014) and later more gracefully
-handle <acronym>HDF4</acronym> files.
-In particular, the ‘<samp>--hdf4</samp>’ switch is obsolete.
-Current versions of <acronym>NCO</acronym> use netCDF to determine automatically
-whether the underlying file is <acronym>HDF4</acronym>, and then take appropriate
-precautions to avoid netCDF4 <acronym>API</acronym> calls that fail when applied
-to <acronym>HDF4</acronym> files (e.g., <code>nc_inq_var_chunking()</code>,
-<code>nc_inq_var_deflate()</code>).
-When compiled with netCDF version 4.3.2 (20140423) or earlier,
-<acronym>NCO</acronym> will report that chunking and deflation properties of
-<acronym>HDF4</acronym> files as <code>HDF4_UNKNOWN</code>, because determining
-those properties was impossible.
-When compiled with netCDF version 4.3.3-rc2 (20140925) or later,
-<acronym>NCO</acronym> versions 4.4.6 (October, 2014) and later fully support
-chunking and deflation features of <acronym>HDF4</acronym> files.
-The ‘<samp>--hdf4</samp>’ switch is supported (for backwards compatibility) yet
-redundant (i.e., does no harm) with current versions of <acronym>NCO</acronym>
-and netCDF.
-</p>
-<p>Converting <acronym>HDF4</acronym> files to netCDF:
-Since <acronym>NCO</acronym> reads <acronym>HDF4</acronym> files natively, it is now easy
-to convert <acronym>HDF4</acronym> files to netCDF files directly, e.g.,
-</p><div class="example">
-<pre class="example">ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks --hdf4 fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.3.7-4.3.9)
-</pre></div>
-<p>The most efficient and accurate way to convert <acronym>HDF4</acronym> data to
-netCDF format is to convert to netCDF4 using <acronym>NCO</acronym> as above.
-Many <acronym>HDF4</acronym> producers (<acronym>NASA</acronym>!) love to use netCDF4
-types, e.g., unsigned bytes, so this procedure is the most typical.
-Conversion of <acronym>HDF4</acronym> to netCDF4 as above suffices when the data
-will only be processed by <acronym>NCO</acronym> and other netCDF4-aware tools.
-</p>
-<a name="index-ncl_005fconvert2nc"></a>
-<a name="index-nc3tonc4"></a>
-<p>However, many tools are not fully netCDF4-aware, and so conversion to
-netCDF3 may be desirable.
-Obtaining any netCDF file from an <acronym>HDF4</acronym> is easy:
-</p><div class="example">
-<pre class="example">ncks -3 fl.hdf fl.nc # HDF4->netCDF3 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks -4 fl.hdf fl.nc # HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (NCO 4.4.0+, ...)
-ncks -7 -L 1 fl.hdf fl.nc # HDF4->netCDF4 classic (NCO 4.4.0+, ...)
-ncks --hdf4 -3 fl.hdf fl.nc # HDF4->netCDF3 (netCDF 4.3.0-)
-ncks --hdf4 -4 fl.hdf fl.nc # HDF4->netCDF4 (netCDF 4.3.0-)
-ncks --hdf4 -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (netCDF 4.3.0-)
-ncks --hdf4 -7 fl.hdf fl.nc # HDF4->netCDF4 classic (netCDF 4.3.0-)
-</pre></div>
-<p>As of <acronym>NCO</acronym> version 4.4.0 (January, 2014), these commands work
-even when the <acronym>HDF4</acronym> file contains netCDF4 atomic types (e.g.,
-unsigned bytes, 64-bit integers) because <acronym>NCO</acronym> can autoconvert
-everything to atomic types supported by netCDF3
-<a name="DOCF9" href="#FOOT9"><sup>9</sup></a>.
-</p>
-<a name="index-hdf_005fname"></a>
-<a name="index-illegal-names"></a>
-<p>As of <acronym>NCO</acronym> version 4.4.4 (May, 2014) both
-<code>ncl_convert2nc</code> and <acronym>NCO</acronym> have built-in, automatic
-workarounds to handle element names that contain characters that are
-legal in <acronym>HDF</acronym> though are illegal in <acronym>netCDF</acronym>.
-For example, slashes and leading special characters are are legal in
-<acronym>HDF</acronym> and illegal in <acronym>netCDF</acronym> element (i.e., group,
-variable, dimension, and attribute) names.
-<acronym>NCO</acronym> converts these forbidden characters to underscores, and
-retains the original names of variables in automatically produced
-attributes named <code>hdf_name</code>
-<a name="DOCF10" href="#FOOT10"><sup>10</sup></a>.
-</p>
-<a name="index-H4CF"></a>
-<a name="index-h4tonccf"></a>
-<p>Finally, in February 2014, we learned that the <acronym>HDF</acronym> group
-has a project called <acronym>H4CF</acronym>
-(described <a href="http://hdfeos.org/software/h4cflib.php">here</a>)
-whose goal is to make <acronym>HDF4</acronym> files accessible to <acronym>CF</acronym>
-tools and conventions.
-Their project includes a tool named <code>h4tonccf</code> that converts
-<acronym>HDF4</acronym> files to netCDF3 or netCDF4 files.
-We are not yet sure what advantages or features <code>h4tonccf</code> has
-that are not in <acronym>NCO</acronym>, though we suspect both methods have their
-own advantages. Corrections welcome.
-</p>
-<a name="index-RPM"></a>
-<a name="index-Debian"></a>
-<p>As of 2012, netCDF4 is relatively stable software.
-Problems with netCDF4 and <acronym>HDF</acronym> libraries have mainly been fixed.
-Binary <acronym>NCO</acronym> distributions shipped as <acronym>RPM</acronym>s and as debs
-have used the netCDF4 library since 2010 and 2011, respectively.
-</p>
-<a name="index-NETCDF4_005fROOT"></a>
-<p>One must often build <acronym>NCO</acronym> from source to obtain netCDF4
-support.
-Typically, one specifies the root of the netCDF4
-installation directory. Do this with the <code>NETCDF4_ROOT</code> variable.
-Then use your preferred <acronym>NCO</acronym> build mechanism, e.g.,
-</p><div class="example">
-<pre class="example">export NETCDF4_ROOT=/usr/local/netcdf4 # Set netCDF4 location
-cd ~/nco;./configure --enable-netcdf4 # Configure mechanism -or-
-cd ~/nco/bld;./make NETCDF4=Y allinone # Old Makefile mechanism
-</pre></div>
-
-<p>We carefully track the netCDF4 releases, and keep the netCDF4 atomic
-type support and other features working.
-Our long term goal is to utilize more of the extensive new netCDF4
-feature set. The next major netCDF4 feature we are likely to utilize
-is parallel I/O. We will enable this in the <acronym>MPI</acronym> netCDF
-operators.
-</p>
-<a name="help"></a> <!-- http://nco.sf.net/nco.html#help -->
-<a name="hlp"></a> <!-- http://nco.sf.net/nco.html#hlp -->
-<a name="bug"></a> <!-- http://nco.sf.net/nco.html#bug --><hr>
-<a name="Help-Requests-and-Bug-Reports"></a>
-<div class="header">
-<p>
-Previous: <a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support" accesskey="p" rel="prev">netCDF2/3/4 and HDF4/5 Support</a>, Up: <a href="#Introduction" accesskey="u" rel="up">Introduction</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Help-Requests-and-Bug-Reports-1"></a>
-<h3 class="section">1.7 Help Requests and Bug Reports</h3>
-<a name="index-reporting-bugs"></a>
-<a name="index-bugs_002c-reporting"></a>
-<a name="index-core-dump"></a>
-<a name="index-help"></a>
-<a name="index-features_002c-requesting"></a>
-<p>We generally receive three categories of mail from users: help requests,
-bug reports, and feature requests.
-Notes saying the equivalent of “Hey, <acronym>NCO</acronym> continues to work
-great and it saves me more time everyday than it took to write this
-note” are a distant fourth.
-</p>
-<p>There is a different protocol for each type of request.
-The preferred etiquette for all communications is via <acronym>NCO</acronym>
-Project Forums.
-Do not contact project members via personal e-mail unless your request
-comes with money or you have damaging information about our personal
-lives.
-<em>Please use the Forums</em>—they preserve a record of the questions
-and answers so that others can learn from our exchange.
-Also, since <acronym>NCO</acronym> is government-funded, this record helps us
-provide program officers with information they need to evaluate our
-project.
-</p>
-<p>Before posting to the <acronym>NCO</acronym> forums described below, you might
-first <a href="https://sf.net/account/register.php">register</a>
-your name and email address with SourceForge.net or else all of your
-postings will be attributed to <em>nobody</em>.
-Once registered you may choose to <em>monitor</em> any forum and to receive
-(or not) email when there are any postings including responses to your
-questions.
-We usually reply to the forum message, not to the original poster.
-</p>
-<p>If you want us to include a new feature in <acronym>NCO</acronym>, check first to
-see if that feature is already on the <a href="file:./TODO">TODO</a> list.
-If it is, why not implement that feature yourself and send us the patch?
-If the feature is not yet on the list, then send a note to the
-<a href="http://sf.net/p/nco/discussion/9829">NCO Discussion forum</a>.
-</p>
-<p>Read the manual before reporting a bug or posting a help request.
-Sending questions whose answers are not in the manual is the best
-way to motivate us to write more documentation.
-We would also like to accentuate the contrapositive of this statement.
-If you think you have found a real bug <em>the most helpful thing you
-can do is simplify the problem to a manageable size and then report it</em>.
-The first thing to do is to make sure you are running the latest
-publicly released version of <acronym>NCO</acronym>.
-</p>
-<p>Once you have read the manual, if you are still unable to get
-<acronym>NCO</acronym> to perform a documented function, submit a help request.
-Follow the same procedure as described below for reporting bugs
-(after all, it might be a bug).
-<a name="index-debugging"></a>
-<a name="index-_002dr"></a>
-<a name="index-_002dD"></a>
-That is, describe what you are trying to do, and include the complete
-commands (run with ‘<samp>-D 5</samp>’), error messages, and version of
-<acronym>NCO</acronym> (with ‘<samp>-r</samp>’).
-Post your help request to the
-<a href="http://sf.net/p/nco/discussion/9830">NCO Help forum</a>.
-</p>
-<p>If you think you used the right command when <acronym>NCO</acronym> misbehaves,
-then you might have found a bug.
-Incorrect numerical answers are the highest priority.
-We usually fix those within one or two days.
-Core dumps and sementation violations receive lower priority.
-They are always fixed, eventually.
-</p>
-<p>How do you simplify a problem that reveal a bug?
-Cut out extraneous variables, dimensions, and metadata from the
-offending files and re-run the command until it no longer breaks.
-Then back up one step and report the problem.
-Usually the file(s) will be very small, i.e., one variable with one or
-two small dimensions ought to suffice.
-<a name="dbg"></a> <!-- http://nco.sf.net/nco.html#dbg -->
-<a name="-D"></a> <!-- http://nco.sf.net/nco.html#-D --><a name="index-_002dr-1"></a>
-<a name="index-_002d_002drevision"></a>
-<a name="index-_002d_002dversion"></a>
-<a name="index-_002d_002dvrs"></a>
-<a name="index-_002dD-debug_002dlevel"></a>
-<a name="index-_002d_002ddebug_002dlevel-debug_002dlevel"></a>
-<a name="index-_002d_002ddbg_005flvl-debug_002dlevel"></a>
-<a name="index-debug_002dlevel"></a>
-<a name="index-dbg_005flvl"></a>
-Run the operator with ‘<samp>-r</samp>’ and then run the command with
-‘<samp>-D 5</samp>’ to increase the verbosity of the debugging output.
-It is very important that your report contain the exact error messages
-and compile-time environment.
-Include a copy of your sample input file, or place one on a
-publically accessible location, of the file(s).
-Post the full bug report to the
-<a href="http://sf.net/bugs/?group_id=3331">NCO Project buglist</a>.
-</p>
-<a name="index-installation-1"></a>
-<a name="index-autoconf"></a>
-<a name="index-nco_002econfigure_002e_0024_007bGNU_005fTRP_007d_002efoo"></a>
-<a name="index-nco_002econfig_002elog_002e_0024_007bGNU_005fTRP_007d_002efoo"></a>
-<a name="index-nco_002emake_002e_0024_007bGNU_005fTRP_007d_002efoo"></a>
-<a name="index-config_002eguess"></a>
-<a name="index-configure_002eeg"></a>
-<p>Build failures count as bugs.
-Our limited machine access means we cannot fix all build failures.
-The information we need to diagnose, and often fix, build failures
-are the three files output by <acronym>GNU</acronym> build tools,
-<samp>nco.config.log.${GNU_TRP}.foo</samp>,
-<samp>nco.configure.${GNU_TRP}.foo</samp>,
-and <samp>nco.make.${GNU_TRP}.foo</samp>.
-The file <samp>configure.eg</samp> shows how to produce these files.
-Here <code>${GNU_TRP}</code> is the “<acronym>GNU</acronym> architecture triplet”,
-the <var>chip-vendor-OS</var> string returned by <samp>config.guess</samp>.
-Please send us your improvements to the examples supplied in
-<samp>configure.eg</samp>.
-<a name="index-regressions-archive"></a>
-The regressions archive at <a href="http://dust.ess.uci.edu/nco/rgr">http://dust.ess.uci.edu/nco/rgr</a>
-contains the build output from our standard test systems.
-You may find you can solve the build problem yourself by examining the
-differences between these files and your own.
-</p>
-<a name="str"></a> <!-- http://nco.sf.net/nco.html#str --><hr>
-<a name="Strategies"></a>
-<div class="header">
-<p>
-Next: <a href="#Shared-features" accesskey="n" rel="next">Shared features</a>, Previous: <a href="#Introduction" accesskey="p" rel="prev">Introduction</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Operator-Strategies"></a>
-<h2 class="chapter">2 Operator Strategies</h2>
-
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Philosophy" accesskey="1">Philosophy</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Climate-Model-Paradigm" accesskey="2">Climate Model Paradigm</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Temporary-Output-Files" accesskey="3">Temporary Output Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Appending-Variables" accesskey="4">Appending Variables</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Simple-Arithmetic-and-Interpolation" accesskey="5">Simple Arithmetic and Interpolation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Statistics-vs_002e-Concatenation" accesskey="6">Statistics vs. Concatenation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Large-Numbers-of-Files" accesskey="7">Large Numbers of Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Large-Datasets" accesskey="8">Large Datasets</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Memory-Requirements" accesskey="9">Memory Requirements</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Performance">Performance</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="phl"></a> <!-- http://nco.sf.net/nco.html#phl --><hr>
-<a name="Philosophy"></a>
-<div class="header">
-<p>
-Next: <a href="#Climate-Model-Paradigm" accesskey="n" rel="next">Climate Model Paradigm</a>, Previous: <a href="#Strategies" accesskey="p" rel="prev">Strategies</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Philosophy-1"></a>
-<h3 class="section">2.1 Philosophy</h3>
-<a name="index-philosophy"></a>
-<a name="index-climate-model"></a>
-
-<p>The main design goal is command line operators which perform useful,
-scriptable operations on netCDF files.
-Many scientists work with models and observations which produce too much
-data to analyze in tabular format.
-Thus, it is often natural to reduce and massage this raw or primary
-level data into summary, or second level data, e.g., temporal or spatial
-averages.
-These second level data may become the inputs to graphical and
-statistical packages, and are often more suitable for archival and
-dissemination to the scientific community.
-<acronym>NCO</acronym> performs a suite of operations useful in manipulating data
-from the primary to the second level state.
-<a name="index-IDL"></a>
-<a name="index-Matlab"></a>
-<a name="index-NCL"></a>
-<a name="index-Perl"></a>
-<a name="index-Yorick"></a>
-Higher level interpretive languages (e.g., <acronym>IDL</acronym>, Yorick,
-Matlab, <acronym>NCL</acronym>, Perl, Python),
-and lower level compiled languages (e.g., C, Fortran) can always perform
-any task performed by <acronym>NCO</acronym>, but often with more overhead.
-NCO, on the other hand, is limited to a much smaller set of arithmetic
-and metadata operations than these full blown languages.
-</p>
-<a name="index-command-line-switches"></a>
-<p>Another goal has been to implement enough command line switches so that
-frequently used sequences of these operators can be executed from a
-shell script or batch file.
-Finally, <acronym>NCO</acronym> was written to consume the absolute minimum
-amount of system memory required to perform a given job.
-The arithmetic operators are extremely efficient; their exact memory
-usage is detailed in <a href="#Memory-Requirements">Memory Requirements</a>.
-</p>
-<a name="clm"></a> <!-- http://nco.sf.net/nco.html#clm --><hr>
-<a name="Climate-Model-Paradigm"></a>
-<div class="header">
-<p>
-Next: <a href="#Temporary-Output-Files" accesskey="n" rel="next">Temporary Output Files</a>, Previous: <a href="#Philosophy" accesskey="p" rel="prev">Philosophy</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Climate-Model-Paradigm-1"></a>
-<h3 class="section">2.2 Climate Model Paradigm</h3>
-<a name="index-climate-model-1"></a>
-<a name="index-NCAR"></a>
-<a name="index-GCM"></a>
-
-<p><acronym>NCO</acronym> was developed at <acronym>NCAR</acronym> to aid analysis and
-manipulation of datasets produced by General Circulation Models
-(<acronym>GCM</acronym>s).
-<acronym>GCM</acronym> datasets share many features with other gridded scientific
-datasets and so provide a useful paradigm for the explication of the
-<acronym>NCO</acronym> operator set.
-Examples in this manual use a <acronym>GCM</acronym> paradigm because latitude,
-longitude, time, temperature and other fields related to our natural
-environment are as easy to visualize for the layman as the expert.
-</p>
-<a name="out"></a> <!-- http://nco.sf.net/nco.html#out --><hr>
-<a name="Temporary-Output-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Appending-Variables" accesskey="n" rel="next">Appending Variables</a>, Previous: <a href="#Climate-Model-Paradigm" accesskey="p" rel="prev">Climate Model Paradigm</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Temporary-Output-Files-1"></a>
-<h3 class="section">2.3 Temporary Output Files</h3>
-<a name="index-data-safety"></a>
-<a name="index-error-tolerance"></a>
-<a name="index-safeguards"></a>
-<a name="index-temporary-output-files"></a>
-<a name="index-temporary-files"></a>
-<p><acronym>NCO</acronym> operators are designed to be reasonably fault tolerant, so
-that a system failure or user-abort of the operation (e.g., with
-<kbd>C-c</kbd>) does not cause loss of data.
-The user-specified <var>output-file</var> is only created upon successful
-completion of the operation
-<a name="DOCF11" href="#FOOT11"><sup>11</sup></a>.
-This is accomplished by performing all operations in a temporary copy
-of <var>output-file</var>.
-The name of the temporary output file is constructed by appending
-<code>.pid<var><process ID></var>.<var><operator name></var>.tmp</code> to the
-user-specified <var>output-file</var> name.
-When the operator completes its task with no fatal errors, the temporary
-output file is moved to the user-specified <var>output-file</var>.
-This imbues the process with fault-tolerance since fatal error
-(e.g., disk space fills up) affect only the temporary output file,
-leaving the final output file not created if it did not already exist.
-Note the construction of a temporary output file uses more disk space
-than just overwriting existing files “in place” (because there may be
-two copies of the same file on disk until the <acronym>NCO</acronym> operation
-successfully concludes and the temporary output file overwrites the
-existing <var>output-file</var>).
-<a name="index-performance-1"></a>
-<a name="index-operator-speed-1"></a>
-<a name="index-speed-1"></a>
-<a name="index-execution-time-1"></a>
-Also, note this feature increases the execution time of the operator
-by approximately the time it takes to copy the <var>output-file</var>
-<a name="DOCF12" href="#FOOT12"><sup>12</sup></a>.
-Finally, note this fault-tolerant feature allows the <var>output-file</var>
-to be the same as the <var>input-file</var> without any danger of
-“overlap”.
-</p>
-<a name="tmp_fl"></a> <!-- http://nco.sf.net/nco.html#tmp_fl -->
-<a name="no_tmp_fl"></a> <!-- http://nco.sf.net/nco.html#no_tmp_fl -->
-<a name="wrt_tmp_fl"></a> <!-- http://nco.sf.net/nco.html#wrt_tmp_fl --><a name="index-_002d_002dno_005ftmp_005ffl"></a>
-<a name="index-_002d_002dwrt_005ftmp_005ffl"></a>
-<a name="index-_002d_002dwrite_005ftmp_005ffl"></a>
-<a name="index-_002d_002dcreate_005fram"></a>
-<a name="index-_002d_002dopen_005fram"></a>
-<a name="index-RAM-disks"></a>
-<a name="index-RAM-files"></a>
-<p>Over time many “power users” have requested a way to turn-off the
-fault-tolerance safety feature of automatically creating a temporary
-file.
-Often these users build and execute production data analysis scripts
-that are repeated frequently on large datasets.
-Obviating an extra file write can then conserve significant disk space
-and time.
-For this purpose <acronym>NCO</acronym> has, since version 4.2.1 in August, 2012,
-made configurable the controls over temporary file creation.
-The ‘<samp>--wrt_tmp_fl</samp>’ and equivalent ‘<samp>--write_tmp_fl</samp>’ switches
-ensure <acronym>NCO</acronym> writes output to an intermediate temporary file.
-This is and has always been the default behavior so there is currently
-no need to specify these switches.
-However, the default may change some day, especially since writing to
-RAM disks (see <a href="#RAM-disks">RAM disks</a>) may some day become the default.
-The ‘<samp>--no_tmp_fl</samp>’ switch causes <acronym>NCO</acronym> to write directly to
-the final output file instead of to an intermediate temporary file.
-“Power users” may wish to invoke this switch to increase performance
-(i.e., reduce wallclock time) when manipulating large files.
-When eschewing temporary files, users may forsake the ability to have
-the same name for both <var>output-file</var> and <var>input-file</var> since, as
-described above, the temporary file prevented overlap issues.
-However, if the user creates the output file in <acronym>RAM</acronym> (see <a href="#RAM-disks">RAM disks</a>)
-then it is still possible to have the same name for both
-<var>output-file</var> and <var>input-file</var>.
-</p><div class="example">
-<pre class="example">ncks in.nc out.nc # Default: create out.pid.tmp.nc then move to out.nc
-ncks --wrt_tmp_fl in.nc out.nc # Same as default
-ncks --no_tmp_fl in.nc out.nc # Create out.nc directly on disk
-ncks --no_tmp_fl in.nc in.nc # ERROR-prone! Overwrite in.nc with itself
-ncks --create_ram --no_tmp_fl in.nc in.nc # Create in RAM, write to disk
-ncks --open_ram --no_tmp_fl in.nc in.nc # Read into RAM, write to disk
-</pre></div>
-<p>There is no reason to expect the fourth example to work.
-The behavior of overwriting a file while reading from the same file is
-undefined, much as is the shell command ‘<samp>cat foo > foo</samp>’.
-Although it may “work” in some cases, it is unreliable.
-One way around this is to use ‘<samp>--create_ram</samp>’ so that the
-output file is not written to disk until the input file is closed,
-See <a href="#RAM-disks">RAM disks</a>.
-However, as of 20130328, the behavior of the ‘<samp>--create_ram</samp>’ and
-‘<samp>--open_ram</samp>’ examples has not been thoroughly tested.
-</p>
-<p>The <acronym>NCO</acronym> authors have seen compelling use cases for utilizing
-the <acronym>RAM</acronym> switches, though not (yet) for combining them with
-‘<samp>--no_tmp_fl</samp>’.
-<acronym>NCO</acronym> implements both options because they are largely
-independent of eachother.
-It is up to “power users” to discover which best fit their needs.
-We welcome accounts of your experiences posted to the forums.
-</p>
-<a name="-A"></a> <!-- http://nco.sf.net/nco.html#-A -->
-<a name="-O"></a> <!-- http://nco.sf.net/nco.html#-O --><a name="index-_002dA"></a>
-<a name="index-_002dO"></a>
-<a name="index-_002d_002dapn"></a>
-<a name="index-_002d_002dappend"></a>
-<a name="index-_002d_002dovr"></a>
-<a name="index-_002d_002doverwrite"></a>
-<a name="index-overwriting-files"></a>
-<a name="index-appending-variables"></a>
-<a name="index-appending-to-files"></a>
-<p>Other safeguards exist to protect the user from inadvertently
-overwriting data.
-If the <var>output-file</var> specified for a command is a pre-existing file,
-then the operator will prompt the user whether to overwrite (erase) the
-existing <var>output-file</var>, attempt to append to it, or abort the
-operation.
-However, in processing large amounts of data, too many interactive
-questions slows productivity.
-Therefore <acronym>NCO</acronym> also implements two ways to override its own
-safety features, the ‘<samp>-O</samp>’ and ‘<samp>-A</samp>’ switches.
-Specifying ‘<samp>-O</samp>’ tells the operator to overwrite any existing
-<var>output-file</var> without prompting the user interactively.
-Specifying ‘<samp>-A</samp>’ tells the operator to attempt to append to any
-existing <var>output-file</var> without prompting the user interactively.
-These switches are useful in batch environments because they suppress
-interactive keyboard input.
-</p>
-<a name="apn"></a> <!-- http://nco.sf.net/nco.html#apn -->
-<a name="append"></a> <!-- http://nco.sf.net/nco.html#append --><hr>
-<a name="Appending-Variables"></a>
-<div class="header">
-<p>
-Next: <a href="#Simple-Arithmetic-and-Interpolation" accesskey="n" rel="next">Simple Arithmetic and Interpolation</a>, Previous: <a href="#Temporary-Output-Files" accesskey="p" rel="prev">Temporary Output Files</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Appending-Variables-1"></a>
-<h3 class="section">2.4 Appending Variables</h3>
-<p>Adding variables from one file to another is often desirable.
-<a name="index-concatenation"></a>
-<a name="index-appending-variables-1"></a>
-<a name="index-merging-files"></a>
-<a name="index-pasting-variables"></a>
-This is referred to as <em>appending</em>, although some prefer the
-terminology <em>merging</em> <a name="DOCF13" href="#FOOT13"><sup>13</sup></a> or <em>pasting</em>.
-Appending is often confused with what <acronym>NCO</acronym> calls
-<em>concatenation</em>.
-<a name="index-record-dimension"></a>
-In <acronym>NCO</acronym>, concatenation refers to splicing a variable
-along the record dimension.
-The length along the record dimension of the output is the sum of the
-lengths of the input files.
-Appending, on the other hand, refers to copying a variable from one file
-to another file which may or may not already contain the variable
-<a name="DOCF14" href="#FOOT14"><sup>14</sup></a>.
-<acronym>NCO</acronym> can append or concatenate just one variable, or all the
-variables in a file at the same time.
-</p>
-<p>In this sense, <code>ncks</code> can append variables from one file to
-another file.
-This capability is invoked by naming two files on the command line,
-<var>input-file</var> and <var>output-file</var>.
-When <var>output-file</var> already exists, the user is prompted whether to
-<em>overwrite</em>, <em>append/replace</em>, or <em>exit</em> from the command.
-Selecting <em>overwrite</em> tells the operator to erase the existing
-<var>output-file</var> and replace it with the results of the operation.
-Selecting <em>exit</em> causes the operator to exit—the <var>output-file</var>
-will not be touched in this case.
-Selecting <em>append/replace</em> causes the operator to attempt to place
-the results of the operation in the existing <var>output-file</var>,
-See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>.
-</p>
-<a name="unn"></a> <!-- http://nco.sf.net/nco.html#unn --><a name="index-union-of-files"></a>
-<a name="index-disjoint-files"></a>
-<p>The simplest way to create the union of two files is
-</p><div class="example">
-<pre class="example">ncks -A fl_1.nc fl_2.nc
-</pre></div>
-<p>This puts the contents of <samp>fl_1.nc</samp> into <samp>fl_2.nc</samp>.
-The ‘<samp>-A</samp>’ is optional.
-On output, <samp>fl_2.nc</samp> is the union of the input files,
-regardless of whether they share dimensions and variables,
-or are completely disjoint.
-The append fails if the input files have differently named record
-dimensions (since netCDF supports only one), or have dimensions of the
-same name but different sizes.
-</p>
-<a name="bnr"></a> <!-- http://nco.sf.net/nco.html#bnr --><hr>
-<a name="Simple-Arithmetic-and-Interpolation"></a>
-<div class="header">
-<p>
-Next: <a href="#Statistics-vs_002e-Concatenation" accesskey="n" rel="next">Statistics vs. Concatenation</a>, Previous: <a href="#Appending-Variables" accesskey="p" rel="prev">Appending Variables</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Simple-Arithmetic-and-Interpolation-1"></a>
-<h3 class="section">2.5 Simple Arithmetic and Interpolation</h3>
-
-<p>Users comfortable with <acronym>NCO</acronym> semantics may find it easier to
-perform some simple mathematical operations in <acronym>NCO</acronym> rather than
-higher level languages.
-<code>ncbo</code> (see <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a>) does file
-addition, subtraction, multiplication, division, and broadcasting.
-It even does group broadcasting.
-<code>ncflint</code> (see <a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a>) does
-file addition, subtraction, multiplication and interpolation.
-Sequences of these commands can accomplish simple yet powerful
-operations from the command line.
-</p>
-<a name="statisticians"></a> <!-- http://nco.sf.net/nco.html#statisticians -->
-<a name="averagers"></a> <!-- http://nco.sf.net/nco.html#averagers --><hr>
-<a name="Statistics-vs_002e-Concatenation"></a>
-<div class="header">
-<p>
-Next: <a href="#Large-Numbers-of-Files" accesskey="n" rel="next">Large Numbers of Files</a>, Previous: <a href="#Simple-Arithmetic-and-Interpolation" accesskey="p" rel="prev">Simple Arithmetic and Interpolation</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Statistics-vs_002e-Concatenation-1"></a>
-<h3 class="section">2.6 Statistics vs. Concatenation</h3>
-
-<a name="sym_ncea"></a> <!-- http://nco.sf.net/nco.html#sym_ncea -->
-<a name="sym_nces"></a> <!-- http://nco.sf.net/nco.html#sym_nces -->
-<a name="sym_ncrcat"></a> <!-- http://nco.sf.net/nco.html#sym_ncrcat --><a name="index-symbolic-links-1"></a>
-<p>The most frequently used operators of <acronym>NCO</acronym> are probably the
-<em>statisticians</em> (i.e., tools that do statistics) and concatenators.
-Because there are so many types of statistics like averaging (e.g.,
-across files, within a file, over the record dimension, over other
-dimensions, with or without weights and masks) and of concatenating
-(across files, along the record dimension, along other dimensions),
-there are currently no fewer than five operators which tackle these two
-purposes: <code>ncra</code>, <code>nces</code>, <code>ncwa</code>,
-<code>ncrcat</code>, and <code>ncecat</code>.
-These operators do share many capabilities <a name="DOCF15" href="#FOOT15"><sup>15</sup></a>, though each has its unique specialty.
-Two of these operators, <code>ncrcat</code> and <code>ncecat</code>,
-concatenate hyperslabs across files.
-The other two operators, <code>ncra</code> and <code>nces</code>, compute
-statistics across (and/or within) files
-<a name="DOCF16" href="#FOOT16"><sup>16</sup></a>.
-First, let’s describe the concatenators, then the statistics tools.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Concatenation" accesskey="1">Concatenation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Averaging" accesskey="2">Averaging</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Interpolating" accesskey="3">Interpolating</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="cnc"></a> <!-- http://nco.sf.net/nco.html#cnc --><hr>
-<a name="Concatenation"></a>
-<div class="header">
-<p>
-Next: <a href="#Averaging" accesskey="n" rel="next">Averaging</a>, Previous: <a href="#Statistics-vs_002e-Concatenation" accesskey="p" rel="prev">Statistics vs. Concatenation</a>, Up: <a href="#Statistics-vs_002e-Concatenation" accesskey="u" rel="up">Statistics vs. Concatenation</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Concatenators-ncrcat-and-ncecat"></a>
-<h4 class="subsection">2.6.1 Concatenators <code>ncrcat</code> and <code>ncecat</code></h4>
-<a name="index-ncecat"></a>
-<a name="index-ncrcat"></a>
-
-<p>Joining together independent files along a common record dimension is
-called <em>concatenation</em>.
-<code>ncrcat</code> is designed for concatenating record variables, while
-<code>ncecat</code> is designed for concatenating fixed length variables.
-Consider five files, <samp>85.nc</samp>, <samp>86.nc</samp>,
-… <samp>89.nc</samp><!-- /@w --> each containing a year’s worth of data.
-Say you wish to create from them a single file, <samp>8589.nc</samp>
-containing all the data, i.e., spanning all five years.
-If the annual files make use of the same record variable, then
-<code>ncrcat</code> will do the job nicely with, e.g.,
-<code>ncrcat 8?.nc 8589.nc</code>.
-The number of records in the input files is arbitrary and can vary from
-file to file.
-See <a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a>, for a complete description of
-<code>ncrcat</code>.
-</p>
-<p>However, suppose the annual files have no record variable, and thus
-their data are all fixed length.
-<a name="index-ensemble"></a>
-<a name="index-climate-model-2"></a>
-For example, the files may not be conceptually sequential, but rather
-members of the same group, or <em>ensemble</em>.
-Members of an ensemble may have no reason to contain a record dimension.
-<code>ncecat</code> will create a new record dimension (named <var>record</var>
-by default) with which to glue together the individual files into the
-single ensemble file.
-If <code>ncecat</code> is used on files which contain an existing record
-dimension, that record dimension is converted to a fixed-length
-dimension of the same name and a new record dimension (named
-<code>record</code>) is created.
-Consider five realizations, <samp>85a.nc</samp>, <samp>85b.nc</samp>,
-… <samp>85e.nc</samp><!-- /@w --> of 1985 predictions from the same climate
-model.
-Then <code>ncecat 85?.nc 85_ens.nc</code> glues together the individual
-realizations into the single file, <samp>85_ens.nc</samp>.
-If an input variable was dimensioned [<code>lat</code>,<code>lon</code>], it will
-have dimensions [<code>record</code>,<code>lat</code>,<code>lon</code>] in the output file.
-A restriction<!-- /@w --> of <code>ncecat</code> is that the hyperslabs of the
-processed variables must be the same from file to file.
-Normally this means all the input files are the same size, and contain
-data on different realizations of the same variables.
-See <a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a>, for a complete description
-of <code>ncecat</code>.
-</p>
-<a name="index-ncpdq"></a>
-<a name="dmn_cat"></a> <!-- http://nco.sf.net/nco.html#dmn_cat --><p><code>ncpdq</code> makes it possible to concatenate files along any
-dimension, not just the record dimension.
-First, use <code>ncpdq</code> to convert the dimension to be concatenated
-(i.e., extended with data from other files) into the record dimension.
-Second, use <code>ncrcat</code> to concatenate these files.
-Finally, if desirable, use <code>ncpdq</code> to revert to the original
-dimensionality.
-As a concrete example, say that files <samp>x_01.nc</samp>, <samp>x_02.nc</samp>,
-… <samp><span class="nolinebreak">x_10.nc</span></samp><!-- /@w --> contain time-evolving datasets from spatially
-adjacent regions.
-The time and spatial coordinates are <code>time</code> and <code>x</code>, respectively.
-Initially the record dimension is <code>time</code>.
-Our goal is to create a single file that contains joins all the
-spatially adjacent regions into one single time-evolving dataset.
-</p><div class="example">
-<pre class="verbatim">for idx in 01 02 03 04 05 06 07 08 09 10; do # Bourne Shell
- ncpdq -a x,time x_${idx}.nc foo_${idx}.nc # Make x record dimension
-done
-ncrcat foo_??.nc out.nc # Concatenate along x
-ncpdq -a time,x out.nc out.nc # Revert to time as record dimension
-</pre></div>
-
-<p>Note that <code>ncrcat</code> will not concatenate fixed-length variables,
-whereas <code>ncecat</code> concatenates both fixed-length and record
-variables along a new record variable.
-To conserve system memory, use <code>ncrcat</code> where possible.
-</p>
-<a name="avg"></a> <!-- http://nco.sf.net/nco.html#avg --><hr>
-<a name="Averaging"></a>
-<div class="header">
-<p>
-Next: <a href="#Interpolating" accesskey="n" rel="next">Interpolating</a>, Previous: <a href="#Concatenation" accesskey="p" rel="prev">Concatenation</a>, Up: <a href="#Statistics-vs_002e-Concatenation" accesskey="u" rel="up">Statistics vs. Concatenation</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Averagers-nces_002c-ncra_002c-and-ncwa"></a>
-<h4 class="subsection">2.6.2 Averagers <code>nces</code>, <code>ncra</code>, and <code>ncwa</code></h4>
-<a name="index-nces"></a>
-<a name="index-ncra"></a>
-<a name="index-ncwa"></a>
-
-<p>The differences between the averagers <code>ncra</code> and <code>nces</code>
-are analogous to the differences between the concatenators.
-<code>ncra</code> is designed for averaging record variables from at least
-one file, while <code>nces</code> is designed for averaging fixed length
-variables from multiple files.
-<code>ncra</code> performs a simple arithmetic average over the record
-dimension of all the input files, with each record having an equal
-weight in the average.
-<code>nces</code> performs a simple arithmetic average of all the input
-files, with each file having an equal weight in the average.
-Note that <code>ncra</code> cannot average fixed-length variables,
-but <code>nces</code> can average both fixed-length and record variables.
-To conserve system memory, use <code>ncra</code> rather than
-<code>nces</code> where possible (e.g., if each <var>input-file</var> is one
-record long).
-The file output from <code>nces</code> will have the same dimensions
-(meaning dimension names as well as sizes) as the input hyperslabs
-(see <a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a>, for a complete description of
-<code>nces</code>).
-The file output from <code>ncra</code> will have the same dimensions as
-the input hyperslabs except for the record dimension, which will have a
-size of 1<!-- /@w --> (see <a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a>, for a complete
-description of <code>ncra</code>).
-</p>
-<a name="ntp"></a> <!-- http://nco.sf.net/nco.html#ntp --><hr>
-<a name="Interpolating"></a>
-<div class="header">
-<p>
-Previous: <a href="#Averaging" accesskey="p" rel="prev">Averaging</a>, Up: <a href="#Statistics-vs_002e-Concatenation" accesskey="u" rel="up">Statistics vs. Concatenation</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Interpolator-ncflint"></a>
-<h4 class="subsection">2.6.3 Interpolator <code>ncflint</code></h4>
-<a name="index-ncflint"></a>
-
-<p><code>ncflint</code> can interpolate data between or two files.
-Since no other operators have this ability, the description of
-interpolation is given fully on the <code>ncflint</code> reference page
-(see <a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a>).
-Note that this capability also allows <code>ncflint</code> to linearly
-rescale any data in a netCDF file, e.g., to convert between differing
-units.
-</p>
-<a name="lrg"></a> <!-- http://nco.sf.net/nco.html#lrg --><hr>
-<a name="Large-Numbers-of-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Large-Datasets" accesskey="n" rel="next">Large Datasets</a>, Previous: <a href="#Statistics-vs_002e-Concatenation" accesskey="p" rel="prev">Statistics vs. Concatenation</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Large-Numbers-of-Files-1"></a>
-<h3 class="section">2.7 Large Numbers of Files</h3>
-<a name="index-files_002c-numerous-input"></a>
-<a name="index-_002dn-loop"></a>
-
-<p>Occasionally one desires to digest (i.e., concatenate or average)
-hundreds or thousands of input files.
-<a name="index-automagic-1"></a>
-<a name="index-NASA-EOSDIS"></a>
-Unfortunately, data archives (e.g., <acronym>NASA EOSDIS</acronym>) may not
-name netCDF files in a format understood by the ‘<samp>-n <var>loop</var></samp>’
-switch (see <a href="#Specifying-Input-Files">Specifying Input Files</a>) that automagically generates
-arbitrary numbers of input filenames.
-The ‘<samp>-n <var>loop</var></samp>’ switch has the virtue of being concise,
-and of minimizing the command line.
-This helps keeps output file small since the command line is stored
-as metadata in the <code>history</code> attribute
-(see <a href="#History-Attribute">History Attribute</a>).
-However, the ‘<samp>-n <var>loop</var></samp>’ switch is useless when there is no
-simple, arithmetic pattern to the input filenames (e.g.,
-<samp>h00001.nc</samp>, <samp>h00002.nc</samp>, … <samp>h90210.nc</samp><!-- /@w -->).
-Moreover, filename globbing does not work when the input files are too
-numerous or their names are too lengthy (when strung together as a
-single argument) to be passed by the calling shell to the <acronym>NCO</acronym>
-operator
-<a name="DOCF17" href="#FOOT17"><sup>17</sup></a>.
-When this occurs, the <acronym>ANSI</acronym> C-standard <code>argc</code>-<code>argv</code>
-method of passing arguments from the calling shell to a C-program (i.e.,
-an <acronym>NCO</acronym> operator) breaks down.
-There are (at least) three alternative methods of specifying the input
-filenames to <acronym>NCO</acronym> in environment-limited situations.
-</p>
-<a name="stdin"></a> <!-- http://nco.sf.net/nco.html#stdin --><a name="index-standard-input"></a>
-<a name="index-stdin"></a>
-<p>The recommended method for sending very large numbers (hundreds or
-more, typically) of input filenames to the multi-file operators is
-to pass the filenames with the <acronym>UNIX</acronym> <em>standard input</em>
-feature, aka <code>stdin</code>:
-</p><div class="example">
-<pre class="verbatim"># Pipe large numbers of filenames to stdin
-/bin/ls | grep ${CASEID}_'......'.nc | ncecat -o foo.nc
-</pre></div>
-<p>This method avoids all constraints on command line size imposed by
-the operating system.
-A drawback to this method is that the <code>history</code> attribute
-(see <a href="#History-Attribute">History Attribute</a>) does not record the name of any input
-files since the names were not passed on the command line.
-This makes determining the data provenance at a later date difficult.
-<a name="index-nco_005finput_005ffile_005fnumber"></a>
-<a name="index-nco_005finput_005ffile_005flist"></a>
-<a name="index-global-attributes"></a>
-<a name="index-attributes_002c-global"></a>
-To remedy this situation, multi-file operators store the number of
-input files in the <code>nco_input_file_number</code> global attribute and the
-input file list itself in the <code>nco_input_file_list</code> global attribute
-(see <a href="#File-List-Attributes">File List Attributes</a>).
-Although this does not preserve the exact command used to generate the
-file, it does retains all the information required to reconstruct the
-command and determine the data provenance.
-</p>
-<a name="index-globbing"></a>
-<a name="index-shell"></a>
-<a name="index-extended-regular-expressions"></a>
-<a name="index-regular-expressions"></a>
-<a name="index-pattern-matching"></a>
-<a name="index-xargs"></a>
-<a name="index-UNIX-2"></a>
-<p>A second option is to use the <acronym>UNIX</acronym> <code>xargs</code> command.
-This simple example selects as input to <code>xargs</code> all the
-filenames in the current directory that match a given pattern.
-For illustration, consider a user trying to average millions of
-files which each have a six character filename.
-If the shell buffer cannot hold the results of the corresponding
-globbing operator, <samp>??????.nc</samp>, then the filename globbing
-technique will fail.
-Instead we express the filename pattern as an extended regular
-expression, <samp>......\.nc</samp> (see <a href="#Subsetting-Files">Subsetting Files</a>).
-We use <code>grep</code> to filter the directory listing for this pattern
-and to pipe the results to <code>xargs</code> which, in turn, passes the
-matching filenames to an <acronym>NCO</acronym> multi-file operator, e.g.,
-<code>ncecat</code>.
-</p><div class="example">
-<pre class="verbatim"># Use xargs to transfer filenames on the command line
-/bin/ls | grep ${CASEID}_'......'.nc | xargs -x ncecat -o foo.nc
-</pre></div>
-<a name="index-pipes"></a>
-<p>The single quotes protect the only sensitive parts of the extended
-regular expression (the <code>grep</code> argument), and allow shell
-interpolation (the <code>${CASEID}</code> variable substitution) to
-proceed unhindered on the rest of the command.
-<code>xargs</code> uses the <acronym>UNIX</acronym> pipe feature to append the
-suitably filtered input file list to the end of the <code>ncecat</code>
-command options.
-<a name="index-output-file"></a>
-<a name="index-input-files"></a>
-<a name="index-_002do-fl_005fout"></a>
-The <code>-o foo.nc</code> switch ensures that the input files supplied by
-<code>xargs</code> are not confused with the output file name.
-<code>xargs</code> does, unfortunately, have its own limit (usually about
-20,000 characters) on the size of command lines it can pass.
-Give <code>xargs</code> the ‘<samp>-x</samp>’ switch to ensure it dies if it
-reaches this internal limit.
-When this occurs, use either the <code>stdin</code> method above, or the
-symbolic link presented next.
-</p>
-<a name="index-symbolic-links-2"></a>
-<p>Even when its internal limits have not been reached, the
-<code>xargs</code> technique may not be sophisticated enough to handle
-all situations.
-A full scripting language like Perl can handle any level of complexity
-of filtering input filenames, and any number of filenames.
-The technique of last resort is to write a script that creates symbolic
-links between the irregular input filenames and a set of regular,
-arithmetic filenames that the ‘<samp>-n <var>loop</var></samp>’ switch understands.
-<a name="index-Perl-1"></a>
-For example, the following Perl script creates a monotonically
-enumerated symbolic link to up to one million <samp>.nc</samp> files in a
-directory. If there are 999,999 netCDF files present, the links are
-named <samp>000001.nc</samp> to <samp>999999.nc</samp>:
-<a name="index-_002dn-loop-1"></a>
-</p><div class="example">
-<pre class="verbatim"># Create enumerated symbolic links
-/bin/ls | grep \.nc | perl -e \
-'$idx=1;while(<STDIN>){chop;symlink $_,sprintf("%06d.nc",$idx++);}'
-ncecat -n 999999,6,1 000001.nc foo.nc
-# Remove symbolic links when finished
-/bin/rm ??????.nc
-</pre></div>
-<p>The ‘<samp>-n <var>loop</var></samp>’ option tells the <acronym>NCO</acronym> operator to
-automatically generate the filnames of the symbolic links.
-This circumvents any <acronym>OS</acronym> and shell limits on command line size.
-The symbolic links are easily removed once <acronym>NCO</acronym> is finished.
-<a name="index-history"></a>
-One drawback to this method is that the <code>history</code> attribute
-(see <a href="#History-Attribute">History Attribute</a>) retains the filename list of the symbolic
-links, rather than the data files themselves.
-This makes it difficult to determine the data provenance at a later
-date.
-</p>
-<hr>
-<a name="Large-Datasets"></a>
-<div class="header">
-<p>
-Next: <a href="#Memory-Requirements" accesskey="n" rel="next">Memory Requirements</a>, Previous: <a href="#Large-Numbers-of-Files" accesskey="p" rel="prev">Large Numbers of Files</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Large-Datasets-1"></a>
-<h3 class="section">2.8 Large Datasets</h3>
-<a name="index-large-datasets"></a>
-<a name="index-LFS"></a>
-<a name="index-Large-File-Support"></a>
-
-<p><em>Large datasets</em> are those files that are comparable in size to the
-amount of random access memory (<acronym>RAM</acronym>) in your computer.
-Many users of <acronym>NCO</acronym> work with files larger than 100 MB<!-- /@w -->.
-Files this large not only push the current edge of storage technology,
-they present special problems for programs which attempt to access the
-entire file at once, such as <code>nces</code> and <code>ncecat</code>.
-<a name="index-swap-space"></a>
-If you work with a 300 MB<!-- /@w --> files on a machine with only 32 MB<!-- /@w --> of
-memory then you will need large amounts of swap space (virtual memory on
-disk) and <acronym>NCO</acronym> will work slowly, or even fail.
-There is no easy solution for this.
-The best strategy is to work on a machine with sufficient amounts of
-memory and swap space.
-Since about 2004, many users have begun to produce or analyze files
-exceeding 2 GB<!-- /@w --> in size.
-These users should familiarize themselves with <acronym>NCO</acronym>’s Large
-File Support (<acronym>LFS</acronym>) capabilities (see <a href="#Large-File-Support">Large File Support</a>).
-The next section will increase your familiarity with <acronym>NCO</acronym>’s
-memory requirements.
-With this knowledge you may re-design your data reduction approach to
-divide the problem into pieces solvable in memory-limited situations.
-</p>
-<a name="ulimit"></a> <!-- http://nco.sf.net/nco.html#ulimit --><a name="index-server"></a>
-<a name="index-UNICOS"></a>
-<a name="index-Cray-1"></a>
-<a name="index-GNU_002fLinux"></a>
-<a name="index-ulimit"></a>
-<a name="index-core-dump-1"></a>
-<p>If your local machine has problems working with large files, try running
-<acronym>NCO</acronym> from a more powerful machine, such as a network server.
-If you get a memory-related core dump
-(e.g., ‘<samp>Error exit (core dumped)</samp>’) on a <acronym>GNU</acronym>/Linux system,
-or the operation ends before the entire output file is written,
-try increasing the process-available memory with <code>ulimit</code>:
-</p><div class="example">
-<pre class="example">ulimit -f unlimited
-</pre></div>
-<p>This may solve constraints on clusters where sufficient hardware
-resources exist yet where system administrators felt it wise to prevent
-any individual user from consuming too much of resource.
-Certain machine architectures, e.g., Cray <acronym>UNICOS</acronym>, have special
-commands which allow one to increase the amount of interactive memory.
-<a name="index-ilimit"></a>
-On Cray systems, try to increase the available memory with the
-<code>ilimit</code> command.
-</p>
-<a name="index-speed-2"></a>
-<p>The speed of the <acronym>NCO</acronym> operators also depends on file size.
-When processing large files the operators may appear to hang, or do
-nothing, for large periods of time.
-In order to see what the operator is actually doing, it is useful to
-activate a more verbose output mode.
-This is accomplished by supplying a number greater than 0<!-- /@w --> to the
-‘<samp>-D <var>debug-level</var></samp>’ (or ‘<samp>--debug-level</samp>’, or
-‘<samp>--dbg_lvl</samp>’) switch.
-<a name="index-_002dD-debug_002dlevel-1"></a>
-<a name="index-_002d_002ddebug_002dlevel-debug_002dlevel-1"></a>
-<a name="index-_002d_002ddbg_005flvl-debug_002dlevel-1"></a>
-<a name="index-debug_002dlevel-1"></a>
-<a name="index-dbg_005flvl-1"></a>
-<a name="index-debugging-1"></a>
-When the <var>debug-level</var> is nonzero, the operators report their
-current status to the terminal through the <var>stderr</var> facility.
-Using ‘<samp>-D</samp>’ does not slow the operators down.
-Choose a <var>debug-level</var> between 1<!-- /@w --> and 3<!-- /@w --> for most situations,
-e.g., <code>nces -D 2 85.nc 86.nc 8586.nc</code>.
-A full<!-- /@w --> description of how to estimate the actual amount of memory the
-multi-file <acronym>NCO</acronym> operators consume is given in
-<a href="#Memory-Requirements">Memory Requirements</a>.
-</p>
-<a name="mmr"></a> <!-- http://nco.sf.net/nco.html#mmr --><hr>
-<a name="Memory-Requirements"></a>
-<div class="header">
-<p>
-Next: <a href="#Performance" accesskey="n" rel="next">Performance</a>, Previous: <a href="#Large-Datasets" accesskey="p" rel="prev">Large Datasets</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Memory-Requirements-1"></a>
-<h3 class="section">2.9 Memory Requirements</h3>
-<a name="index-memory-requirements"></a>
-<a name="index-memory-available"></a>
-<a name="index-RAM"></a>
-<a name="index-swap-space-1"></a>
-<a name="index-peak-memory-usage"></a>
-<a name="index-_002d_002dram_005fall"></a>
-<a name="index-_002d_002dopen_005fram-1"></a>
-<a name="index-_002d_002ddiskless_005fall"></a>
-
-<p>Many people use <acronym>NCO</acronym> on gargantuan files which dwarf the
-memory available (free <acronym>RAM</acronym> plus swap space) even on today’s powerful
-machines.
-These users want <acronym>NCO</acronym> to consume the least memory possible
-so that their scripts do not have to tediously cut files into smaller
-pieces that fit into memory.
-We commend these greedy users for pushing <acronym>NCO</acronym> to its limits!
-</p>
-<a name="index-threads"></a>
-<a name="index-OpenMP"></a>
-<a name="index-shared-memory-machines"></a>
-<p>This section describes the memory <acronym>NCO</acronym> requires during
-operation.
-The required memory is based on the underlying algorithms.
-The description below is the memory usage per thread.
-Users with shared memory machines may use the threaded <acronym>NCO</acronym>
-operators (see <a href="#OpenMP-Threading">OpenMP Threading</a>).
-The peak and sustained memory usage will scale accordingly,
-i.e., by the number of threads.
-Memory consumption patterns of all operators are similar, with
-the exception of <code>ncap2</code>.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Single-and-Multi_002dfile-Operators" accesskey="1">Single and Multi-file Operators</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Memory-for-ncap2" accesskey="2">Memory for ncap2</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Single-and-Multi_002dfile-Operators"></a>
-<div class="header">
-<p>
-Next: <a href="#Memory-for-ncap2" accesskey="n" rel="next">Memory for ncap2</a>, Previous: <a href="#Memory-Requirements" accesskey="p" rel="prev">Memory Requirements</a>, Up: <a href="#Memory-Requirements" accesskey="u" rel="up">Memory Requirements</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Single-and-Multi_002dfile-Operators-1"></a>
-<h4 class="subsection">2.9.1 Single and Multi-file Operators</h4>
-
-<a name="index-multi_002dfile-operators"></a>
-<p>The multi-file operators currently comprise the record operators,
-<code>ncra</code> and <code>ncrcat</code>, and the ensemble operators,
-<code>nces</code> and <code>ncecat</code>.
-The record operators require <em>much less</em> memory than the ensemble
-operators.
-This is because the record operators operate on one single record (i.e.,
-time-slice) at a time, whereas the ensemble operators retrieve the
-entire variable into memory.
-Let <em>MS</em> be the peak sustained memory demand of an operator,
-<em>FT</em> be the memory required to store the entire contents of all the
-variables to be processed in an input file,
-<em>FR</em> be the memory required to store the entire contents of a
-single record of each of the variables to be processed in an input file,
-<em>VR</em> be the memory required to store a single record of the
-largest record variable to be processed in an input file,
-<em>VT</em> be the memory required to store the largest variable
-to be processed in an input file,
-<em>VI</em> be the memory required to store the largest variable
-which is not processed, but is copied from the initial file to the
-output file.
-All operators require <em>MI = VI</em> during the initial copying of
-variables from the first input file to the output file.
-This is the <em>initial</em> (and transient) memory demand.
-The <em>sustained</em> memory demand is that memory required by the
-operators during the processing (i.e., averaging, concatenation)
-phase which lasts until all the input files have been processed.
-The operators have the following memory requirements:
-<code>ncrcat</code> requires <em>MS <= VR</em>.
-<code>ncecat</code> requires <em>MS <= VT</em>.
-<code>ncra</code> requires <em>MS = 2FR + VR</em>.
-<code>nces</code> requires <em>MS = 2FT + VT</em>.
-<code>ncbo</code> requires <em>MS <= 3VT</em>
-(both input variables and the output variable).
-<code>ncflint</code> requires <em>MS <= 3VT</em>
-(both input variables and the output variable).
-<code>ncpdq</code> requires <em>MS <= 2VT</em>
-(one input variable and the output variable).
-<code>ncwa</code> requires <em>MS <= 8VT</em> (see below).
-Note that only variables that are processed, e.g., averaged,
-concatenated, or differenced, contribute to <em>MS</em>.
-Variables which do not appear in the output file
-(see <a href="#Subsetting-Files">Subsetting Files</a>) are never read and contribute nothing
-to the memory requirements.
-</p>
-<p>Further note that some operators perform internal type-promotion on some
-variables prior to arithmetic (see <a href="#Type-Conversion">Type Conversion</a>).
-For example, <code>ncra</code> and <code>nces</code> both promote integer
-types to double-precision floating point prior to arithmetic, then
-perform the arithmetic, then demote back to the original integer type
-after arithmetic.
-This preserves the on-disk storage type while obtaining the accuracy
-advantages of floating point arithmetic.
-Since version 4.3.6 (released in September, 2013), <acronym>NCO</acronym> also
-by default converts single-precision floating point to double-precision
-prior to arithmetic, which incurs the same <acronym>RAM</acronym> penalty.
-Hence, the sustained memory required for integer variables and
-single-precision floats are two or four-times their on-disk,
-uncompressed, unpacked sizes if they meet the rules for automatic
-internal promotion.
-Put another way, disabling auto-promotion of single-precision variables
-(with ‘<samp>--flt</samp>’) considerably reduces the <acronym>RAM</acronym> footprint
-of arithmetic operators.
-</p>
-<p>The ‘<samp>--open_ram</samp>’ switch (and switches that invoke it like
-‘<samp>--ram_all</samp>’ and ‘<samp>--diskless_all</samp>’) incurs a <acronym>RAM</acronym>
-penalty.
-These switches cause each input file to be copied to <acronym>RAM</acronym> upon
-opening.
-Hence any operator invoking these switches utilizes an additional
-<em>FT</em> of <acronym>RAM</acronym> (i.e., <em>MS += FT</em>).
-See <a href="#RAM-disks">RAM disks</a> for further details.
-</p>
-<a name="mmr_ncwa"></a> <!-- http://nco.sf.net/nco.html#mmr_ncwa --><p><code>ncwa</code> consumes between two and seven times the memory of a
-variable in order to process it.
-Peak consumption occurs when storing simultaneously in memory
-one input variable, one tally array,
-one input weight, one conformed/working weight, one weight tally,
-one input mask, one conformed/working mask, and
-one output variable.
-When invoked, the weighting and masking features contribute up to
-three-sevenths and two-sevenths of these requirements apiece.
-If weights and masks are <em>not</em> specified
-(i.e., no ‘<samp>-w</samp>’ or ‘<samp>-a</samp>’ options)
-then <code>ncwa</code> requirements drop to <em>MS <= 3VT</em>
-(one input variable, one tally array, and the output variable).
-</p>
-<a name="index-OpenMP-1"></a>
-<a name="index-threads-1"></a>
-<p>The above memory requirements must be multiplied by the number of
-threads <var>thr_nbr</var> (see <a href="#OpenMP-Threading">OpenMP Threading</a>).
-<a name="index-_002dt-thr_005fnbr"></a>
-If this causes problems then reduce (with ‘<samp>-t <var>thr_nbr</var></samp>’) the
-number of threads.
-</p>
-<hr>
-<a name="Memory-for-ncap2"></a>
-<div class="header">
-<p>
-Previous: <a href="#Single-and-Multi_002dfile-Operators" accesskey="p" rel="prev">Single and Multi-file Operators</a>, Up: <a href="#Memory-Requirements" accesskey="u" rel="up">Memory Requirements</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Memory-for-ncap2-1"></a>
-<h4 class="subsection">2.9.2 Memory for <code>ncap2</code></h4>
-<a name="index-ncap2"></a>
-<a name="index-binary-operations"></a>
-<a name="index-unary-operations"></a>
-<a name="index-memory-leaks"></a>
-<a name="index-left-hand-casting"></a>
-<p><code>ncap2</code> has unique memory requirements due its ability to process
-arbitrarily long scripts of any complexity.
-All scripts acceptable to <code>ncap2</code> are ultimately processed as a
-sequence of binary or unary operations.
-<code>ncap2</code> requires <em>MS <= 2VT</em> under most conditions.
-An exception to this is when left hand casting (see <a href="#Left-hand-casting">Left hand casting</a>) is used to stretch the size of derived variables beyond the
-size of any input variables.
-Let <em>VC</em> be the memory required to store the largest variable
-defined by left hand casting.
-In this case, <em>MS <= 2VC</em>.
-</p>
-<a name="index-malloc_0028_0029"></a>
-<p><code>ncap2</code> scripts are complete dynamic and may be of arbitrary
-length.
-A script that contains many thousands of operations, may uncover a
-slow memory leak even though each single operation consumes little
-additional memory.
-Memory leaks are usually identifiable by their memory usage signature.
-Leaks cause peak memory usage to increase monotonically with time
-regardless of script complexity.
-Slow leaks are very difficult to find.
-Sometimes a <code>malloc()</code> (or <code>new[]</code>) failure is the
-only noticeable clue to their existance.
-If you have good reasons to believe that a memory allocation failure
-is ultimately due to an <acronym>NCO</acronym> memory leak (rather than
-inadequate <acronym>RAM</acronym> on your system), then we would be very
-interested in receiving a detailed bug report.
-</p>
-<hr>
-<a name="Performance"></a>
-<div class="header">
-<p>
-Previous: <a href="#Memory-Requirements" accesskey="p" rel="prev">Memory Requirements</a>, Up: <a href="#Strategies" accesskey="u" rel="up">Strategies</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Performance-1"></a>
-<h3 class="section">2.10 Performance</h3>
-
-<a name="index-papers"></a>
-<a name="index-overview"></a>
-<p>An overview of <acronym>NCO</acronym> capabilities as of about 2006 is in
-Zender, C. S. (2008),
-“Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO)”,
-Environ. Modell. Softw., doi:10.1016/j.envsoft.2008.03.004.
-This paper is also available at
-<a href="http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf">http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf</a>.
-</p>
-<a name="index-scaling"></a>
-<a name="index-performance-2"></a>
-<p><acronym>NCO</acronym> performance and scaling for arithmetic operations is
-described in
-Zender, C. S., and H. J. Mangalam (2007),
-“Scaling Properties of Common Statistical Operators for Gridded Datasets”,
-Int. J. High<!-- /@w --> Perform. Comput. Appl., 21(4), 485-498,
-doi:10.1177/1094342007083802.
-This paper is also available at
-<a href="http://dust.ess.uci.edu/ppr/ppr_ZeM07.pdf">http://dust.ess.uci.edu/ppr/ppr_ZeM07.pdf</a>.
-</p>
-<p>It is helpful to be aware of the aspects of <acronym>NCO</acronym> design
-that can limit its performance:
-</p><ol>
-<li> <a name="index-buffering"></a>
-No data buffering is performed during <code>nc_get_var</code> and
-<code>nc_put_var</code> operations.
-<a name="index-performance-3"></a>
-<a name="index-operator-speed-2"></a>
-<a name="index-speed-3"></a>
-<a name="index-execution-time-2"></a>
-Hyperslabs too large too hold in core memory will suffer substantial
-performance penalties because of this.
-
-</li><li> <a name="index-monotonic-coordinates"></a>
-Since coordinate variables are assumed to be monotonic, the search for
-bracketing the user-specified limits should employ a quicker algorithm,
-like bisection, than the two-sided incremental search currently
-implemented.
-
-</li><li> <a name="index-C_005fformat"></a>
-<a name="index-FORTRAN_005fformat"></a>
-<a name="index-signedness"></a>
-<a name="index-scale_005fformat"></a>
-<a name="index-add_005foffset"></a>
-<var>C_format</var>, <var>FORTRAN_format</var>, <var>signedness</var>,
-<var>scale_format</var> and <var>add_offset</var> attributes are ignored by
-<code>ncks</code> when printing variables to screen.
-
-</li><li> <a name="index-Yorick-1"></a>
-In the late 1990s it was discovered that some random access operations
-on large files on certain architectures (e.g., <acronym>UNICOS</acronym>) were
-much slower with <acronym>NCO</acronym> than with similar operations performed
-using languages that bypass the netCDF interface (e.g., Yorick).
-This may have been a penalty of unnecessary byte-swapping in the netCDF
-interface.
-It is unclear whether such problems exist in present day (2007)
-netCDF/<acronym>NCO</acronym> environments, where unnecessary byte-swapping has
-been reduced or eliminated.
-</li></ol>
-
-<a name="ftr"></a> <!-- http://nco.sf.net/nco.html#ftr --><hr>
-<a name="Shared-features"></a>
-<div class="header">
-<p>
-Next: <a href="#Reference-Manual" accesskey="n" rel="next">Reference Manual</a>, Previous: <a href="#Strategies" accesskey="p" rel="prev">Strategies</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Shared-Features"></a>
-<h2 class="chapter">3 Shared Features</h2>
-
-<p>Many features have been implemented in more than one operator and are
-described here for brevity.
-The description of each feature is preceded by a box listing the
-operators for which the feature is implemented.
-<a name="index-command-line-switches-1"></a>
-Command line switches for a given feature are consistent across all
-operators wherever possible.
-If no “key switches” are listed for a feature, then that particular
-feature is automatic and cannot be controlled by the user.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Internationalization" accesskey="1">Internationalization</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Metadata-Optimization" accesskey="2">Metadata Optimization</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#OpenMP-Threading" accesskey="3">OpenMP Threading</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Command-Line-Options" accesskey="4">Command Line Options</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Specifying-Input-Files" accesskey="5">Specifying Input Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Specifying-Output-Files" accesskey="6">Specifying Output Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Remote-storage" accesskey="7">Remote storage</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Retaining-Retrieved-Files" accesskey="8">Retaining Retrieved Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#File-Formats-and-Conversion" accesskey="9">File Formats and Conversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Large-File-Support">Large File Support</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Subsetting-Files">Subsetting Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Group-Path-Editing">Group Path Editing</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Hyperslabs">Hyperslabs</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Stride">Stride</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Record-Appending">Record Appending</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Subcycle">Subcycle</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Multislabs">Multislabs</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Wrapped-Coordinates">Wrapped Coordinates</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#UDUnits-Support">UDUnits Support</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Rebasing-Time-Coordinate">Rebasing Time Coordinate</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Multiple-Record-Dimensions">Multiple Record Dimensions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Missing-Values">Missing Values</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Chunking">Chunking</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Compression">Compression</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Deflation">Deflation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#MD5-digests">MD5 digests</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Buffer-sizes">Buffer sizes</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#RAM-disks">RAM disks</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Packed-data">Packed data</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Operation-Types">Operation Types</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Type-Conversion">Type Conversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Batch-Mode">Batch Mode</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#History-Attribute">History Attribute</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#File-List-Attributes">File List Attributes</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#CF-Conventions">CF Conventions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ARM-Conventions">ARM Conventions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Operator-Version">Operator Version</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="i18n"></a> <!-- http://nco.sf.net/nco.html#i18n --><hr>
-<a name="Internationalization"></a>
-<div class="header">
-<p>
-Next: <a href="#Metadata-Optimization" accesskey="n" rel="next">Metadata Optimization</a>, Previous: <a href="#Shared-features" accesskey="p" rel="prev">Shared features</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Internationalization-1"></a>
-<h3 class="section">3.1 Internationalization</h3>
-<a name="index-Internationalization"></a>
-<a name="index-I18N"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-</p></td></tr></table>
-<a name="index-L10N"></a>
-<p><acronym>NCO</acronym> support for <em>internationalization</em> of textual input
-and output (e.g., Warning messages) is nascent.
-We introduced the first foreign language string catalogues (French and
-Spanish) in 2004, yet did not activate these in distributions because
-the catalogues were nearly empty.
-We seek volunteers to populate our templates with translations for their
-favorite languages.
-</p>
-<a name="hdr"></a> <!-- http://nco.sf.net/nco.html#hdr -->
-<a name="hdr_pad"></a> <!-- http://nco.sf.net/nco.html#hdr_pad --><hr>
-<a name="Metadata-Optimization"></a>
-<div class="header">
-<p>
-Next: <a href="#OpenMP-Threading" accesskey="n" rel="next">OpenMP Threading</a>, Previous: <a href="#Internationalization" accesskey="p" rel="prev">Internationalization</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Metadata-Optimization-1"></a>
-<h3 class="section">3.2 Metadata Optimization</h3>
-<a name="index-metadata-optimization"></a>
-<a name="index-performance-4"></a>
-<a name="index-operator-speed-3"></a>
-<a name="index-speed-4"></a>
-<a name="index-execution-time-3"></a>
-<a name="index-nc_005f_005fenddef_0028_0029"></a>
-<a name="index-_002d_002dhdr_005fpad-hdr_005fpad"></a>
-<a name="index-_002d_002dheader_005fpad-hdr_005fpad"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: None<br>
-Long options: ‘<samp>--hdr_pad</samp>’, ‘<samp>--header_pad</samp>’<br>
-</p></td></tr></table>
-<p><acronym>NCO</acronym> supports padding headers to improve the speed of future
-metadata operations.
-Use the ‘<samp>--hdr_pad</samp>’ and ‘<samp>--header_pad</samp>’ switches to request
-that <var>hdr_pad</var> bytes be inserted into the metadata section of the
-output file.
-Future metadata expansions will not incur the netCDF3 performance
-penalty of copying the entire output file unless the expansion exceeds
-the amount of header padding exceeded.
-This can be beneficial when it is known that some metadata will be added
-at a future date.
-The operators which benefit most from judicious use of header padding
-are <code>ncatted</code> and <code>ncrename</code>, since they only alter
-metadata.
-</p>
-<p>This optimization exploits the netCDF library <code>nc__enddef()</code>
-function, which behaves differently with different versions of netCDF.
-It will improve speed of future metadata expansion with <code>CLASSIC</code>
-and <code>64bit</code> netCDF files, though not necessarily with <code>NETCDF4</code>
-files, i.e., those created by the netCDF interface to the <acronym>HDF5</acronym>
-library (see <a href="#File-Formats-and-Conversion">File Formats and Conversion</a>).
-</p>
-<a name="omp"></a> <!-- http://nco.sf.net/nco.html#omp -->
-<a name="openmp"></a> <!-- http://nco.sf.net/nco.html#openmp --><hr>
-<a name="OpenMP-Threading"></a>
-<div class="header">
-<p>
-Next: <a href="#Command-Line-Options" accesskey="n" rel="next">Command Line Options</a>, Previous: <a href="#Metadata-Optimization" accesskey="p" rel="prev">Metadata Optimization</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="OpenMP-Threading-1"></a>
-<h3 class="section">3.3 OpenMP Threading</h3>
-<a name="index-OpenMP-2"></a>
-<a name="index-threads-2"></a>
-<a name="index-SMP"></a>
-<a name="index-shared-memory-parallelism"></a>
-<a name="index-parallelism"></a>
-<a name="index-nco_005fopenmp_005fthread_005fnumber"></a>
-<a name="index-_002d_002dthr_005fnbr-thr_005fnbr"></a>
-<a name="index-_002d_002dthreads-thr_005fnbr"></a>
-<a name="index-_002d_002domp_005fnum_005fthreads-thr_005fnbr"></a>
-<a name="index-_002dt-thr_005fnbr-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncpdq</code>, <code>ncra</code>, <code>ncrcat</code>,
-<code>ncwa</code><br>
-Short options: ‘<samp>-t</samp>’<br>
-Long options: ‘<samp>--thr_nbr</samp>’, ‘<samp>--threads</samp>’,
-‘<samp>--omp_num_threads</samp>’<br>
-</p></td></tr></table>
-<p><acronym>NCO</acronym> supports shared memory parallelism (<acronym>SMP</acronym>) when
-compiled with an OpenMP-enabled compiler.
-Threads requests and allocations occur in two stages.
-First, users may request a specific number of threads <var>thr_nbr</var> with
-the ‘<samp>-t</samp>’ switch (or its long option equivalents, ‘<samp>--thr_nbr</samp>’,
-‘<samp>--threads</samp>’, and ‘<samp>--omp_num_threads</samp>’).
-If not user-specified, OpenMP obtains <var>thr_nbr</var> from the
-<code>OMP_NUM_THREADS</code> environment variable, if present, or from the
-<acronym>OS</acronym>, if not.
-</p>
-<table class="cartouche" border="1"><tr><td>
-<p>Caveat:
-Unfortunately, threading does not improve <acronym>NCO</acronym> throughput (i.e.,
-wallclock time) because nearly all <acronym>NCO</acronym> operations are
-I/O-bound.
-This means that <acronym>NCO</acronym> spends negligible time doing anything
-compared to reading and writing.
-We have seen some and can imagine other use cases where
-<code>ncwa</code>, <code>ncpdq</code>, and <code>ncap2</code> (with long scripts)
-will complete faster due to threading.
-The main benefits of threading so far have been to isolate the serial
-from parallel portions of code.
-This parallelism is now exploited by OpenMP but then runs into the I/O
-bottleneck during output.
-The bottleneck will be ameliorated for large files by the use of
-MPI-enabled calls in the netCDF4 library when the underlying filesystem
-is parallel (e.g., <acronym>PVFS</acronym> or <acronym>JFS</acronym>).
-Implementation of the parallel output calls in <acronym>NCO</acronym> is not a
-goal of our current funding and would require new volunteers or funding.
-</p></td></tr></table>
-
-<a name="index-thr_005fnbr"></a>
-<a name="index-OMP_005fNUM_005fTHREADS"></a>
-<a name="index-ncrcat-1"></a>
-<a name="index-ncwa-1"></a>
-<a name="index-ncap2-1"></a>
-<a name="index-ncpdq-1"></a>
-<a name="index-large-datasets-1"></a>
-<p><acronym>NCO</acronym> may modify <var>thr_nbr</var> according to its own internal
-settings before it requests any threads from the system.
-Certain operators contain hard-code limits to the number of threads they
-request.
-We base these limits on our experience and common sense, and to reduce
-potentially wasteful system usage by inexperienced users.
-For example, <code>ncrcat</code> is extremely I/O-intensive so we restrict
-<em><var>thr_nbr</var> <= 2</em> for <code>ncrcat</code>.
-This is based on the notion that the best performance that can be
-expected from an operator which does no arithmetic is to have one thread
-reading and one thread writing simultaneously.
-In the future (perhaps with netCDF4), we hope to demonstrate significant
-threading improvements with operators like <code>ncrcat</code> by performing
-multiple simultaneous writes.
-</p>
-<p>Compute-intensive operators (<code>ncap2</code>, <code>ncwa</code> and <code>ncpdq</code>)
-benefit most from threading.
-The greatest increases in throughput due to threading occur on
-large datasets where each thread performs millions, at least,
-of floating point operations.
-Otherwise, the system overhead of setting up threads probably outweighs
-the speed enhancements due to <acronym>SMP</acronym> parallelism.
-However, we have not yet demonstrated that the <acronym>SMP</acronym> parallelism
-scales beyond four threads for these operators.
-Hence we restrict <em><var>thr_nbr</var> <= 4</em> for all operators.
-We encourage users to play with these limits (edit file
-<samp>nco_omp.c</samp>) and send us their feedback.
-</p>
-<a name="index-debugging-2"></a>
-<a name="index-dbg_005flvl-2"></a>
-<p>Once the initial <var>thr_nbr</var> has been modified for any
-operator-specific limits, <acronym>NCO</acronym> requests the system to allocate
-a team of <var>thr_nbr</var> threads for the body of the code.
-The operating system then decides how many threads to allocate
-based on this request.
-Users may keep track of this information by running the operator with
-<em><var>dbg_lvl</var> > 0</em>.
-</p>
-<p>By default, threaded operators attach one global attribute,
-<code>nco_openmp_thread_number</code>, to any file they create or modify.
-This attribute contains the number of threads the operator used to
-process the input files.
-This information helps to verify that the answers with threaded and
-non-threaded operators are equal to within machine precision.
-<a name="index-benchmarks"></a>
-This information is also useful for benchmarking.
-</p>
-<a name="cmd_ln"></a> <!-- http://nco.sf.net/nco.html#cmd_ln --><hr>
-<a name="Command-Line-Options"></a>
-<div class="header">
-<p>
-Next: <a href="#Specifying-Input-Files" accesskey="n" rel="next">Specifying Input Files</a>, Previous: <a href="#OpenMP-Threading" accesskey="p" rel="prev">OpenMP Threading</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Command-Line-Options-1"></a>
-<h3 class="section">3.4 Command Line Options</h3>
-<a name="index-command-line-options"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-</p></td></tr></table>
-<a name="index-POSIX"></a>
-<a name="index-UNIX-3"></a>
-<a name="index-GNU"></a>
-<a name="index-switches"></a>
-<p><acronym>NCO</acronym> achieves flexibility by using <em>command line options</em>.
-These options are implemented in all traditional <acronym>UNIX</acronym> commands
-as single letter <em>switches</em>, e.g., ‘<samp>ls -l</samp>’.
-For many years <acronym>NCO</acronym> used only single letter option names.
-In late 2002, we implemented <acronym>GNU</acronym>/<acronym>POSIX</acronym> extended
-or long option names for all options.
-This was done in a backward compatible way such that the full
-functionality of <acronym>NCO</acronym> is still available through the familiar
-single letter options.
-In the future, however, some features of <acronym>NCO</acronym> may require the
-use of long options, simply because we have nearly run out of single
-letter options.
-More importantly, mnemonics for single letter options are often
-non-intuitive so that long options provide a more natural way of
-expressing intent.
-</p>
-<a name="index-long-options"></a>
-<p>Extended options, also called long options, are implemented using the
-system-supplied <samp>getopt.h</samp> header file, if possible.
-<a name="index-BSD"></a>
-<a name="index-getopt"></a>
-<a name="index-getopt_005flong"></a>
-<a name="index-getopt_002eh"></a>
-This provides the <code>getopt_long</code> function to <acronym>NCO</acronym>
-<a name="DOCF18" href="#FOOT18"><sup>18</sup></a>.
-</p>
-<a name="index-_002dD-debug_002dlevel-2"></a>
-<a name="index-_002d_002ddbg_005flvl-debug_002dlevel-2"></a>
-<p>The syntax of <em>short options</em> (single letter options) is
-<kbd>-<var>key</var> <var>value</var></kbd> (dash-key-space-value).
-Here, <var>key</var> is the single letter option name, e.g.,
-‘<samp>-D 2</samp>’.
-</p>
-<p>The syntax of <em>long options</em> (multi-letter options) is
-<kbd>--<var>long_name</var> <var>value</var></kbd>
-(dash-dash-key-space-value), e.g., ‘<samp>--dbg_lvl 2</samp>’ or
-<kbd>--<var>long_name</var>=<var>value</var></kbd>
-(dash-dash-key-equal-value), e.g., ‘<samp>--dbg_lvl=2</samp>’.
-Thus the following are all valid for the ‘<samp>-D</samp>’ (short version)
-or ‘<samp>--dbg_lvl</samp>’ (long version) command line option.
-</p><div class="example">
-<pre class="example">ncks -D 3 in.nc # Short option
-ncks --dbg_lvl=3 in.nc # Long option, preferred form
-ncks --dbg_lvl 3 in.nc # Long option, alternate form
-</pre></div>
-<p>The last example is preferred for two reasons.
-First, ‘<samp>--dbg_lvl</samp>’ is more specific and less ambiguous than
-‘<samp>-D</samp>’.
-The long option form makes scripts more self documenting and less error
-prone.
-Often long options are named after the source code variable whose value
-they carry.
-Second, the equals sign <kbd>=</kbd> joins the key (i.e., <var>long_name</var>) to
-the value in an uninterruptible text block.
-Experience shows that users are less likely to mis-parse commands when
-restricted to this form.
-</p>
-<p><acronym>GNU</acronym> implements a superset of the <acronym>POSIX</acronym> standard
-which allows any unambiguous truncation of a valid option to be used.
-</p><div class="example">
-<pre class="example">ncks -D 3 in.nc # Short option
-ncks --dbg_lvl=3 in.nc # Long option, full form
-ncks --dbg=3 in.nc # Long option, unambiguous truncation
-ncks --db=3 in.nc # Long option, unambiguous truncation
-ncks --d=3 in.nc # Long option, ambiguous truncation
-</pre></div>
-<p>The first four examples are equivalent and will work as expected.
-The final example will exit with an error since <code>ncks</code> cannot
-disambiguate whether ‘<samp>--d</samp>’ is intended as a truncation of
-‘<samp>--dbg_lvl</samp>’, of ‘<samp>--dimension</samp>’, or of some other long option.
-</p>
-<p><acronym>NCO</acronym> provides many long options for common switches.
-For example, the debugging level may be set in all operators with any
-of the switches ‘<samp>-D</samp>’, ‘<samp>--debug-level</samp>’, or ‘<samp>--dbg_lvl</samp>’.
-This flexibility allows users to choose their favorite mnemonic.
-For some, it will be ‘<samp>--debug</samp>’ (an unambiguous truncation of
-‘<samp>--debug-level</samp>’, and other will prefer ‘<samp>--dbg</samp>’.
-Interactive users usually prefer the minimal amount of typing, i.e.,
-‘<samp>-D</samp>’.
-We recommend that scripts which are re-usable employ some form of
-the long options for future maintainability.
-</p>
-<p>This manual generally uses the short option syntax in examples.
-This is for historical reasons and to conserve space in printed output.
-Users are expected to pick the unambiguous truncation of each option
-name that most suits their taste.
-</p>
-<a name="fl_in"></a> <!-- http://nco.sf.net/nco.html#fl_in -->
-<a name="in"></a> <!-- http://nco.sf.net/nco.html#in -->
-<a name="input"></a> <!-- http://nco.sf.net/nco.html#input --><hr>
-<a name="Specifying-Input-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Specifying-Output-Files" accesskey="n" rel="next">Specifying Output Files</a>, Previous: <a href="#Command-Line-Options" accesskey="p" rel="prev">Command Line Options</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Specifying-Input-Files-1"></a>
-<h3 class="section">3.5 Specifying Input Files</h3>
-<a name="index-input-files-1"></a>
-<a name="index-globbing-1"></a>
-<a name="index-regular-expressions-1"></a>
-<a name="index-wildcards"></a>
-<a name="index-NINTAP"></a>
-<a name="index-Processor_002c-CCM"></a>
-<a name="index-CCM-Processor"></a>
-<a name="index-_002dn-loop-2"></a>
-<a name="index-_002d_002dnintap-loop"></a>
-<a name="index-_002dp-input_002dpath"></a>
-<a name="index-_002d_002dpth-input_002dpath"></a>
-<a name="index-_002d_002dpath-input_002dpath"></a>
-<a name="index-input_002dpath"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability (<code>-n</code>): <code>nces</code>, <code>ncecat</code>, <code>ncra</code>, <code>ncrcat</code><br>
-Availability (<code>-p</code>): All operators<br>
-Short options: ‘<samp>-n</samp>’, ‘<samp>-p</samp>’<br>
-Long options: ‘<samp>--nintap</samp>’, ‘<samp>--pth</samp>’, ‘<samp>--path</samp>’<br>
-</p></td></tr></table>
-<p>It is important that users be able to specify multiple input files
-without typing every filename in full, often a tedious task even
-by graduate student standards.
-<a name="index-UNIX-4"></a>
-There are four different ways of specifying input files to <acronym>NCO</acronym>:
-explicitly typing each, using <acronym>UNIX</acronym> shell wildcards, and using
-the <acronym>NCO</acronym> ‘<samp>-n</samp>’ and ‘<samp>-p</samp>’ switches (or their long option
-equivalents, ‘<samp>--nintap</samp>’ or ‘<samp>--pth</samp>’ and ‘<samp>--path</samp>’,
-respectively).
-Techniques to augment these methods to specify arbitrary numbers (e.g.,
-thousands) and patterns of filenames are discussed separately
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-</p>
-<p>To illustrate these methods, consider the simple problem of using
-<code>ncra</code> to average five input files, <samp>85.nc</samp>, <samp>86.nc</samp>,
-… <samp>89.nc</samp><!-- /@w -->, and store the results in <samp>8589.nc</samp>.
-Here are the four methods in order.
-They produce identical answers.
-</p><div class="example">
-<pre class="example">ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra 8[56789].nc 8589.nc
-ncra -p <var>input-path</var> 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra -n 5,2,1 85.nc 8589.nc
-</pre></div>
-<p>The first method (explicitly specifying all filenames) works by brute
-force.
-The second method relies on the operating system shell to <em>glob</em>
-(expand) the <em>regular expression</em> <code>8[56789].nc</code>.
-The shell then passes the valid filenames (those which match the
-regular expansion) to <code>ncra</code>.
-In this case <code>ncra</code> never knows that a regular expression was
-used, because the shell intercepts and expands and matches the regular
-expression before <code>ncra</code> is actually invoked.
-The third method uses the ‘<samp>-p <var>input-path</var></samp>’ argument to specify
-the directory where all the input files reside.
-<acronym>NCO</acronym> prepends <var>input-path</var> (e.g.,
-<samp>/data/username/model</samp>) to all <var>input-files</var> (though not to
-<var>output-file</var>).
-Thus, using ‘<samp>-p</samp>’, the path to any number of input files need only
-be specified once.
-Note <var>input-path</var> need not end with ‘<samp>/</samp>’; the ‘<samp>/</samp>’ is
-automatically generated if necessary.
-</p>
-<p>The last method passes (with ‘<samp>-n</samp>’) syntax concisely describing
-the entire set of filenames
-<a name="DOCF19" href="#FOOT19"><sup>19</sup></a>.
-<a name="index-multi_002dfile-operators-1"></a>
-<a name="index-files_002c-multiple"></a>
-This option is only available with the <em>multi-file operators</em>:
-<code>ncra</code>, <code>ncrcat</code>, <code>nces</code>, and <code>ncecat</code>.
-By definition, multi-file operators are able to process an arbitrary
-number of <var>input-files</var>.
-This option is very useful for abbreviating lists of filenames
-representable as
-<var>alphanumeric_prefix</var>+<var>numeric_suffix</var>+<samp>.</samp>+<var>filetype</var>
-where <var>alphanumeric_prefix</var> is a string of arbitrary length and
-composition, <var>numeric_suffix</var> is a fixed width field of digits, and
-<var>filetype</var> is a standard filetype indicator.
-For example, in the file <samp>ccm3_h0001.nc</samp>, we have
-<var>alphanumeric_prefix</var> = <samp>ccm3_h</samp>, <var>numeric_suffix</var> =
-<samp>0001</samp>, and <var>filetype</var> = <samp>nc</samp>.
-</p>
-<p><acronym>NCO</acronym> decodes lists of such filenames encoded using the
-‘<samp>-n</samp>’ syntax.
-The simpler (3-argument) ‘<samp>-n</samp>’ usage takes the form
-<code>-n <var>file_number</var>,<var>digit_number</var>,<var>numeric_increment</var></code>
-where <var>file_number</var> is the number of files, <var>digit_number</var> is
-the fixed number of numeric digits comprising the <var>numeric_suffix</var>,
-and <var>numeric_increment</var> is the constant, integer-valued difference
-between the <var>numeric_suffix</var> of any two consecutive files.
-The value of <var>alphanumeric_prefix</var> is taken from the input file,
-which serves as a template for decoding the filenames.
-In the example above, the encoding <code>-n 5,2,1</code> along with the input
-file name <samp>85.nc</samp> tells <acronym>NCO</acronym> to
-construct five (5) filenames identical to the template <samp>85.nc</samp>
-except that the final two (2) digits are a numeric suffix to be
-incremented by one (1) for each successive file.
-Currently <var>filetype</var> may be either be empty, <samp>nc</samp>,
-<samp>cdf</samp>, <samp>hdf</samp>, or <samp>hd5</samp>.
-If present, these <var>filetype</var> suffixes (and the preceding <samp>.</samp>)
-are ignored by <acronym>NCO</acronym> as it uses the ‘<samp>-n</samp>’ arguments to
-locate, evaluate, and compute the <var>numeric_suffix</var> component of
-filenames.
-</p>
-<a name="index-wrapped-filenames"></a>
-<a name="index-climate-model-3"></a>
-<p>Recently the ‘<samp>-n</samp>’ option has been extended to allow convenient
-specification of filenames with “circular” characteristics.
-This means it is now possible for <acronym>NCO</acronym> to automatically
-generate filenames which increment regularly until a specified maximum
-value, and then wrap back to begin again at a specified minimum value.
-The corresponding ‘<samp>-n</samp>’ usage becomes more complex, taking one or
-two additional arguments for a total of four or five, respectively:
-<code>-n
-<var>file_number</var>,<var>digit_number</var>,<var>numeric_increment</var>[,<var>numeric_max</var>[,<var>numeric_min</var>]]</code>
-where <var>numeric_max</var>, if present, is the maximum integer-value of
-<var>numeric_suffix</var> and <var>numeric_min</var>, if present, is the minimum
-integer-value of <var>numeric_suffix</var>.
-Consider, for example, the problem of specifying non-consecutive input
-files where the filename suffixes end with the month index.
-In climate modeling it is common to create summertime and wintertime
-averages which contain the averages of the months June–July–August,
-and December–January–February, respectively:
-</p><div class="example">
-<pre class="example">ncra -n 3,2,1 85_06.nc 85_0608.nc
-ncra -n 3,2,1,12 85_12.nc 85_1202.nc
-ncra -n 3,2,1,12,1 85_12.nc 85_1202.nc
-</pre></div>
-<p>The first example shows that three arguments to the ‘<samp>-n</samp>’ option
-suffice to specify consecutive months (<code>06, 07, 08</code>) which do not
-“wrap” back to a minimum value.
-The second example shows how to use the optional fourth and fifth
-elements of the ‘<samp>-n</samp>’ option to specify a wrap value.
-The fourth argument to ‘<samp>-n</samp>’, when present, specifies the maximum
-integer value of <var>numeric_suffix</var>.
-In the example the maximum value is 12,<!-- /@w --> and will be formatted as
-<samp>12</samp> in the filename string.
-The fifth argument to ‘<samp>-n</samp>’, when present, specifies the minimum
-integer value of <var>numeric_suffix</var>.
-The default minimum filename suffix is 1,<!-- /@w --> which is formatted as
-<samp>01</samp> in this case.
-Thus the second and third examples have the same effect, that is, they
-automatically generate, in order, the filenames <samp>85_12.nc</samp>,
-<samp>85_01.nc</samp>, and <samp>85_02.nc</samp> as input to <acronym>NCO</acronym>.
-</p>
-<a name="fl_out"></a> <!-- http://nco.sf.net/nco.html#fl_out -->
-<a name="out"></a> <!-- http://nco.sf.net/nco.html#out -->
-<a name="output"></a> <!-- http://nco.sf.net/nco.html#output --><hr>
-<a name="Specifying-Output-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Remote-storage" accesskey="n" rel="next">Remote storage</a>, Previous: <a href="#Specifying-Input-Files" accesskey="p" rel="prev">Specifying Input Files</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Specifying-Output-Files-1"></a>
-<h3 class="section">3.6 Specifying Output Files</h3>
-<a name="index-output-file-1"></a>
-<a name="index-input-files-2"></a>
-<a name="index-positional-arguments"></a>
-<a name="index-command-line-switches-2"></a>
-<a name="index-_002do-fl_005fout-1"></a>
-<a name="index-_002d_002doutput-fl_005fout"></a>
-<a name="index-_002d_002dfl_005fout-fl_005fout"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-o</samp>’<br>
-Long options: ‘<samp>--fl_out</samp>’, ‘<samp>--output</samp>’<br>
-</p></td></tr></table>
-<p><acronym>NCO</acronym> commands produce no more than one output file, <var>fl_out</var>.
-Traditionally, users specify <var>fl_out</var> as the final argument to the
-operator, following all input file names.
-This is the <em>positional argument</em> method of specifying input and
-ouput file names.
-The positional argument method works well in most applications.
-<acronym>NCO</acronym> also supports specifying <var>fl_out</var> using the command
-line switch argument method, ‘<samp>-o <var>fl_out</var></samp>’.
-</p>
-<p>Specifying <var>fl_out</var> with a switch, rather than as a positional
-argument, allows <var>fl_out</var> to precede input files in the argument
-list.
-<a name="index-multi_002dfile-operators-2"></a>
-This is particularly useful with multi-file operators for three reasons.
-Multi-file operators may be invoked with hundreds (or more) filenames.
-Visual or automatic location of <var>fl_out</var> in such a list is
-difficult when the only syntactic distinction between input and output
-files is their position.
-<a name="index-xargs-1"></a>
-<a name="index-input-files-3"></a>
-Second, specification of a long list of input files may be difficult
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-Making the input file list the final argument to an operator facilitates
-using <code>xargs</code> for this purpose.
-Some alternatives to <code>xargs</code> are heinous and undesirable.
-Finally, many users are more comfortable specifying output files
-with ‘<samp>-o <var>fl_out</var></samp>’ near the beginning of an argument list.
-<a name="index-compilers"></a>
-<a name="index-linkers"></a>
-Compilers and linkers are usually invoked this way.
-</p>
-<p>Users should specify <var>fl_out</var> using either (not both) method.
-If <var>fl_out</var> is specified twice (once with the switch and once as
-the last positional argument), then the positional argument takes
-precedence.
-</p>
-<a name="rmt"></a> <!-- http://nco.sf.net/nco.html#rmt --><hr>
-<a name="Remote-storage"></a>
-<div class="header">
-<p>
-Next: <a href="#Retaining-Retrieved-Files" accesskey="n" rel="next">Retaining Retrieved Files</a>, Previous: <a href="#Specifying-Output-Files" accesskey="p" rel="prev">Specifying Output Files</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Accessing-Remote-Files"></a>
-<h3 class="section">3.7 Accessing Remote Files</h3>
-<a name="index-rcp-1"></a>
-<a name="index-scp-1"></a>
-<a name="index-_002erhosts"></a>
-<a name="index-NCAR-MSS"></a>
-<a name="index-MSS"></a>
-<a name="index-Mass-Store-System"></a>
-<a name="index-URL"></a>
-<a name="index-ftp-1"></a>
-<a name="index-sftp-1"></a>
-<a name="index-wget"></a>
-<a name="index-remote-files-1"></a>
-<a name="index-synchronous-file-access"></a>
-<a name="index-asynchronous-file-access"></a>
-<a name="index-_002d_002dpth-input_002dpath-1"></a>
-<a name="index-_002d_002dpath-input_002dpath-1"></a>
-<a name="index-_002d_002dlcl-output_002dpath"></a>
-<a name="index-_002d_002dlocal-output_002dpath"></a>
-<a name="index-_002dl-output_002dpath"></a>
-<a name="index-_002enetrc"></a>
-<a name="index-history-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-p</samp>’, ‘<samp>-l</samp>’<br>
-Long options: ‘<samp>--pth</samp>’, ‘<samp>--path</samp>’, ‘<samp>--lcl</samp>’, ‘<samp>--local</samp>’<br>
-</p></td></tr></table>
-<p>All <acronym>NCO</acronym> operators can retrieve files from remote sites as well
-as from the local file system.
-A remote<!-- /@w --> site can be an anonymous <acronym>FTP</acronym> server, a machine on
-which the user has <code>rcp</code>, <code>scp</code>, or <code>sftp</code>
-privileges, <acronym>NCAR</acronym>’s Mass Storage System (<acronym>MSS</acronym>), or
-an <acronym>OPeNDAP</acronym> server.
-Examples of each are given below, following a brief description of the
-particular access protocol.
-</p>
-<a name="ftp"></a> <!-- http://nco.sf.net/nco.html#ftp --><p>To access a file via an anonymous <acronym>FTP</acronym> server, simply supply
-the remote file’s <acronym>URL</acronym>.
-Anonymous <acronym>FTP</acronym> usually requires no further credentials,
-e.g., no <samp>.netrc</samp> file is necessary.
-<acronym>FTP</acronym> is an intrinsically insecure protocol because it transfers
-passwords in plain text format.
-Users should access sites using anonymous <acronym>FTP</acronym>, or better yet,
-secure <acronym>FTP</acronym> (<acronym>SFTP</acronym>, see below) when possible.
-Some <acronym>FTP</acronym> servers require a login/password combination for a
-valid user account.
-<acronym>NCO</acronym> allows transactions that require additional credentials
-so long as the required information is stored in the <samp>.netrc</samp> file.
-Usually this information is the remote machine name, login, and
-password, in plain text, separated by those very keywords, e.g.,
-</p><div class="example">
-<pre class="example">machine dust.ess.uci.edu login zender password bushlied
-</pre></div>
-<p>Eschew using valuable passwords for <acronym>FTP</acronym> transactions, since
-<samp>.netrc</samp> passwords are potentially exposed to eavesdropping
-software
-<a name="DOCF20" href="#FOOT20"><sup>20</sup></a>.
-</p>
-<a name="sftp"></a> <!-- http://nco.sf.net/nco.html#sftp --><p><acronym>SFTP</acronym>, i.e., secure <acronym>FTP</acronym>, uses <acronym>SSH</acronym>-based
-security protocols that solve the security issues associated with
-plain <acronym>FTP</acronym>.
-<acronym>NCO</acronym> supports <acronym>SFTP</acronym> protocol access to files
-specified with a homebrew syntax of the form
-</p><div class="example">
-<pre class="example">sftp://machine.domain.tld:/path/to/filename
-</pre></div>
-<p>Note the second colon following the top-level-domain, <code>tld</code>.
-This syntax is a hybrid between an <acronym>FTP URL</acronym> and standard
-remote file syntax.
-</p>
-<a name="rcp"></a> <!-- http://nco.sf.net/nco.html#rcp -->
-<a name="scp"></a> <!-- http://nco.sf.net/nco.html#scp --><p>To access a file using <code>rcp</code> or <code>scp</code>, specify the
-Internet address of the remote file.
-Of course in this case you must have <code>rcp</code> or <code>scp</code>
-privileges which allow transparent (no password entry required) access
-to the remote machine.
-This means that <samp>~/.rhosts</samp> or <samp>~/ssh/authorized_keys</samp> must
-be set accordingly on both local and remote machines.
-</p>
-<a name="index-HPSS"></a>
-<a name="index-hsi"></a>
-<a name="index-msrcp"></a>
-<a name="index-msread"></a>
-<a name="index-nrnet"></a>
-<a name="hpss"></a> <!-- http://nco.sf.net/nco.html#hpss -->
-<a name="HPSS"></a> <!-- http://nco.sf.net/nco.html#HPSS -->
-<a name="hsi"></a> <!-- http://nco.sf.net/nco.html#hsi -->
-<a name="HSI"></a> <!-- http://nco.sf.net/nco.html#HSI -->
-<a name="msrcp"></a> <!-- http://nco.sf.net/nco.html#msrcp -->
-<a name="msread"></a> <!-- http://nco.sf.net/nco.html#msread -->
-<a name="nrnet"></a> <!-- http://nco.sf.net/nco.html#nrnet --><p>To access a file on a High Performance Storage System (<acronym>HPSS</acronym>)
-(such as that at <acronym>NCAR</acronym>, <acronym>ECMWF</acronym>, <acronym>LANL</acronym>,
-<acronym>DKRZ</acronym>, <acronym>LLNL</acronym>) specify the full <acronym>HPSS</acronym> pathname
-of the remote file.
-<acronym>NCO</acronym> will attempt to detect whether the local machine has direct
-(synchronous) <acronym>HPSS</acronym> access.
-In this case, <acronym>NCO</acronym> attempts to use the Hierarchical Storage
-Interface (<acronym>HSI</acronym>) command <code>hsi get</code>
-<a name="DOCF21" href="#FOOT21"><sup>21</sup></a>.
-</p>
-<p>The following examples show how one might analyze files stored on
-remote systems.
-</p><div class="example">
-<pre class="example">ncks -l . ftp://dust.ess.uci.edu/pub/zender/nco/in.nc
-ncks -l . sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco/in.nc
-ncks -l . dust.ess.uci.edu:/home/zender/nco/data/in.nc
-ncks -l . /ZENDER/nco/in.nc
-ncks -l . /home/zender/nco/in.nc
-ncks -l . http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
-</pre></div>
-<p>The first example works verbatim if your system is connected to the
-Internet and is not behind a firewall.
-The second example works if you have <code>sftp</code> access to the
-machine <code>dust.ess.uci.edu</code>.
-The third example works if you have <code>rcp</code> or <code>scp</code>
-access to the machine <code>dust.ess.uci.edu</code>.
-The fourth and fifth examples work on <acronym>NCAR</acronym> computers with
-local access to the <acronym>HPSS</acronym> <code>hsi get</code> command
-<a name="DOCF22" href="#FOOT22"><sup>22</sup></a>.
-The sixth command works if your local version of <acronym>NCO</acronym> is
-<acronym>OPeNDAP</acronym>-enabled (this is fully described in <a href="#OPeNDAP">OPeNDAP</a>),
-or if the remote file is accessible via <code>wget</code>.
-The above commands can be rewritten using the ‘<samp>-p <var>input-path</var></samp>’
-option as follows:
-<a name="index-_002dp-input_002dpath-1"></a>
-<a name="index-input_002dpath-1"></a>
-<a name="index-_002dl-output_002dpath-1"></a>
-<a name="index-output_002dpath"></a>
-</p><div class="example">
-<pre class="example">ncks -p ftp://dust.ess.uci.edu/pub/zender/nco -l . in.nc
-ncks -p sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco -l . in.nc
-ncks -p dust.ess.uci.edu:/home/zender/nco -l . in.nc
-ncks -p /ZENDER/nco -l . in.nc
-ncks -p /home/zender/nco -l . in.nc # HPSS
-ncks -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l . in.nc
-</pre></div>
-<p>Using ‘<samp>-p</samp>’ is recommended because it clearly separates the
-<var>input-path</var> from the filename itself, sometimes called the
-<em>stub</em>.
-<a name="index-stub"></a>
-When <var>input-path</var> is not explicitly specified using ‘<samp>-p</samp>’,
-<acronym>NCO</acronym> internally generates an <var>input-path</var> from the first
-input filename.
-The automatically generated <var>input-path</var> is constructed by stripping
-the input filename of everything following the final ‘<samp>/</samp>’ character
-(i.e., removing the stub).
-The ‘<samp>-l <var>output-path</var></samp>’ option tells <acronym>NCO</acronym> where to
-store the remotely retrieved file.
-It has no effect on locally-retrieved files, or on the output file.
-Often the path to a remotely retrieved file is quite different than the
-path on the local machine where you would like to store the file.
-If ‘<samp>-l</samp>’ is not specified then <acronym>NCO</acronym> internally generates an
-<var>output-path</var> by simply setting <var>output-path</var> equal to
-<var>input-path</var> stripped of any machine names.
-If ‘<samp>-l</samp>’ is not specified and the remote file resides on the
-<acronym>NCAR</acronym> <acronym>HPSS</acronym> system, then the leading character of
-<var>input-path</var>, ‘<samp>/</samp>’, is also stripped from <var>output-path</var>.
-Specifying <var>output-path</var> as ‘<samp>-l ./</samp>’ tells <acronym>NCO</acronym> to
-store the remotely retrieved file and the output file in the current
-directory.
-Note that ‘<samp>-l .</samp>’ is equivalent to ‘<samp>-l ./</samp>’ though the latter is
-syntactically more clear.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#OPeNDAP" accesskey="1">OPeNDAP</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="dap"></a> <!-- http://nco.sf.net/nco.html#dap -->
-<a name="DAP"></a> <!-- http://nco.sf.net/nco.html#DAP -->
-<a name="DODS"></a> <!-- http://nco.sf.net/nco.html#DODS -->
-<a name="OPeNDAP"></a> <!-- http://nco.sf.net/nco.html#OPeNDAP -->
-<a name="dods"></a> <!-- http://nco.sf.net/nco.html#dods -->
-<a name="opendap"></a> <!-- http://nco.sf.net/nco.html#opendap --><hr>
-<a name="OPeNDAP"></a>
-<div class="header">
-<p>
-Previous: <a href="#Remote-storage" accesskey="p" rel="prev">Remote storage</a>, Up: <a href="#Remote-storage" accesskey="u" rel="up">Remote storage</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="OPeNDAP-1"></a>
-<h4 class="subsection">3.7.1 <acronym>OPeNDAP</acronym></h4>
-<a name="index-DAP"></a>
-<a name="index-DODS"></a>
-<a name="index-HTTP-protocol"></a>
-<a name="index-DODS_005fROOT"></a>
-<a name="index-Distributed-Oceanographic-Data-System"></a>
-<a name="index-oceanography"></a>
-<a name="index-data-access-protocol"></a>
-<a name="index-Open_002dsource-Project-for-a-Network-Data-Access-Protocol"></a>
-<a name="index-OPeNDAP_002e"></a>
-<a name="index-server-1"></a>
-<a name="index-client_002dserver"></a>
-<p>The Distributed Oceanographic Data System (<acronym>DODS</acronym>) provides
-useful replacements for common data interface libraries like netCDF.
-The <acronym>DODS</acronym> versions of these libraries implement network
-transparent access to data via a client-server data access protocol
-that uses the <acronym>HTTP</acronym> protocol for communication.
-Although <acronym>DODS</acronym>-technology originated with oceanography data,
-it applyies to virtually all scientific data.
-In recognition of this, the data access protocol underlying
-<acronym>DODS</acronym> (which is what <acronym>NCO</acronym> cares about) has been
-renamed the Open-source Project for a Network Data Access Protocol,
-<acronym>OPeNDAP</acronym>.
-We use the terms <acronym>DODS</acronym> and <acronym>OPeNDAP</acronym> interchangeably,
-and often write <acronym>OPeNDAP</acronym>/<acronym>DODS</acronym> for now.
-In the future we will deprecate <acronym>DODS</acronym> in favor of
-<acronym>DAP</acronym> or <acronym>OPeNDAP</acronym>, as appropriate
-<a name="DOCF23" href="#FOOT23"><sup>23</sup></a>.
-</p>
-<p><acronym>NCO</acronym> may be <acronym>DAP</acronym>-enabled by linking
-<acronym>NCO</acronym> to the <acronym>OPeNDAP</acronym> libraries.
-<a name="index-Makefile-2"></a>
-This is described in the <acronym>OPeNDAP</acronym> documentation and
-automagically implemented in <acronym>NCO</acronym> build mechanisms
-<a name="DOCF24" href="#FOOT24"><sup>24</sup></a>.
-The <samp>./configure</samp> mechanism automatically enables <acronym>NCO</acronym> as
-<acronym>OPeNDAP</acronym> clients if it can find the required
-<acronym>OPeNDAP</acronym> libraries
-<a name="DOCF25" href="#FOOT25"><sup>25</sup></a>.
- in the usual locations.
-The <code>$DODS_ROOT</code> environment variable may be used to override the
-default <acronym>OPeNDAP</acronym> library location at <acronym>NCO</acronym>
-compile-time.
-Building <acronym>NCO</acronym> with <samp>bld/Makefile</samp> and the command
-<code>make DODS=Y</code> adds the (non-intuitive) commands to link to the
-<acronym>OPeNDAP</acronym> libraries installed in the <code>$DODS_ROOT</code>
-directory.
-The file <samp>doc/opendap.sh</samp> contains a generic script intended to help
-users install <acronym>OPeNDAP</acronym> before building <acronym>NCO</acronym>.
-The documentation at the
-<a href="http://www.opendap.org">OPeNDAP Homepage</a>
-is voluminous.
-Check there and on the
-<a href="http://www.unidata.ucar.edu/packages/dods/home/mailLists/">DODS mail lists</a>.
-to learn more about the extensive capabilities of <acronym>OPeNDAP</acronym>
-<a name="DOCF26" href="#FOOT26"><sup>26</sup></a>.
-</p>
-<p>Once <acronym>NCO</acronym> is <acronym>DAP</acronym>-enabled the operators are
-<acronym>OPeNDAP</acronym> clients.
-All <acronym>OPeNDAP</acronym> clients have network transparent access to
-any files controlled by a <acronym>OPeNDAP</acronym> server.
-Simply specify the input file path(s) in <acronym>URL</acronym> notation and all
-<acronym>NCO</acronym> operations may be performed on remote files made
-accessible by a <acronym>OPeNDAP</acronym> server.
-This command tests the basic functionality of <acronym>OPeNDAP</acronym>-enabled
-<acronym>NCO</acronym> clients:
-</p><div class="example">
-<pre class="example">% ncks -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
-% ncks -H -v one ~/foo.nc
-one = 1
-</pre></div>
-<p>The <code>one = 1</code> outputs confirm (first) that <code>ncks</code> correctly
-retrieved data via the <acronym>OPeNDAP</acronym> protocol and (second) that
-<code>ncks</code> created a valid local copy of the subsetted remote file.
-With minor changes to the above command, netCDF4 can be used as both the
-input and output file format:
-</p><div class="example">
-<pre class="example">% ncks -4 -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
-% ncks -H -v one ~/foo.nc
-one = 1
-</pre></div>
-<p>And, of course, <acronym>OPeNDAP</acronym>-enabled <acronym>NCO</acronym> clients continue
-to support orthogonal features such as UDUnits
-(see <a href="#UDUnits-Support">UDUnits Support</a>):
-</p><div class="example">
-<pre class="example">% ncks -u -C -H -v wvl -d wvl,'0.4 micron','0.7 micron' \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
-% wvl[0]=5e-07 meter
-</pre></div>
-
-<p>The next command is a more advanced example which demonstrates the real
-power of <acronym>OPeNDAP</acronym>-enabled <acronym>NCO</acronym> clients.
-The <code>ncwa</code> client requests an equatorial hyperslab from remotely
-stored <acronym>NCEP reanalyses data</acronym> of the year 1969<!-- /@w -->.
-The <acronym>NOAA</acronym> <acronym>OPeNDAP</acronym> server (hopefully!) serves these data.
-The local <code>ncwa</code> client then computes and stores (locally) the
-regional mean surface pressure (in Pa)<!-- /@w -->.
-</p><div class="example">
-<pre class="example">ncwa -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc ~/foo.nc
-</pre></div>
-<a name="index-packing"></a>
-<a name="index-unpacking"></a>
-<p>All with one command!
-The data in this particular input file also happen to be packed
-(see <a href="#Methods-and-functions">Methods and functions</a>), although this complication is
-transparent to the user since <acronym>NCO</acronym> automatically unpacks data
-before attempting arithmetic.
-</p>
-<p><acronym>NCO</acronym> obtains remote files from the <acronym>OPeNDAP</acronym> server
-(e.g., <samp>www.cdc.noaa.gov</samp>) rather than the local machine.
-Input files are first copied to the local machine, then processed.
-The <acronym>OPeNDAP</acronym> server performs data access, hyperslabbing,
-and transfer to the local machine.
-<a name="index-I_002fO"></a>
-This allows the I/O to appear to <acronym>NCO</acronym> as if the input files
-were local.
-The local machine performs all arithmetic operations.
-Only the hyperslabbed output data are transferred over the network (to
-the local machine) for the number-crunching to begin.
-The advantages of this are obvious if you are examining small parts of
-large files stored at remote locations.
-</p>
-<p>Natually there are many versions of <acronym>OPeNDAP</acronym> servers supplying
-data and bugs in the server can appear to be bugs in <acronym>NCO</acronym>.
-However, with very few exceptions
-<a name="DOCF27" href="#FOOT27"><sup>27</sup></a> an <acronym>NCO</acronym> command that works
-on a local file must work across an <acronym>OPeNDAP</acronym> connection or else
-there is a bug in the server.
-This is because <acronym>NCO</acronym> does nothing special to handle files
-served by <acronym>OPeNDAP</acronym>, the whole process is (supposed to be)
-completely transparent to the client <acronym>NCO</acronym> software.
-Therefore it is often useful to try <acronym>NCO</acronym> commands on various
-<acronym>OPeNDAP</acronym> servers in order to isolate whether a problem may be
-due to a bug in the <acronym>OPeNDAP</acronym> server on a particular machine.
-For this purpose, one might try variations of the following commands
-that access files on public <acronym>OPeNDAP</acronym> servers:
-</p><div class="example">
-<pre class="example"># Strided access to HDF5 file
-ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/opendap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5
-# Strided access to netCDF3 file
-ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u_velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtofs_glo_2ds_forecast_daily_prog ~/foo.nc
-</pre></div>
-<p>These servers were operational at the time of writing, March 2014.
-Unfortunately, administrators often move or rename path directories.
-Recommendations for additional public <acronym>OPeNDAP</acronym> servers on
-which to test <acronym>NCO</acronym> are welcome.
-</p>
-<a name="rtn"></a> <!-- http://nco.sf.net/nco.html#rtn --><hr>
-<a name="Retaining-Retrieved-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#File-Formats-and-Conversion" accesskey="n" rel="next">File Formats and Conversion</a>, Previous: <a href="#Remote-storage" accesskey="p" rel="prev">Remote storage</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Retaining-Retrieved-Files-1"></a>
-<h3 class="section">3.8 Retaining Retrieved Files</h3>
-<a name="index-file-deletion"></a>
-<a name="index-file-removal"></a>
-<a name="index-file-retention"></a>
-<a name="index-_002dR"></a>
-<a name="index-_002d_002drtn"></a>
-<a name="index-_002d_002dretain"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-R</samp>’<br>
-Long options: ‘<samp>--rtn</samp>’, ‘<samp>--retain</samp>’<br>
-</p></td></tr></table>
-<p>In order to conserve local file system space, files retrieved from
-remote locations are automatically deleted from the local file system
-once they have been processed.
-Many <acronym>NCO</acronym> operators were constructed to work with numerous
-large (e.g., 200 MB<!-- /@w -->) files.
-Retrieval of multiple files from remote locations is done serially.
-Each file is retrieved, processed, then deleted before the cycle
-repeats.
-In cases where it is useful to keep the remotely-retrieved files on the
-local file system after processing, the automatic removal feature may be
-disabled by specifying ‘<samp>-R</samp>’ on the command line.
-</p>
-<p>Invoking <code>-R</code> disables the default printing behavior of
-<code>ncks</code>.
-This allows <code>ncks</code> to retrieve remote files without
-automatically trying to print them.
-See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>, for more details.
-</p>
-<a name="index-FTP"></a>
-<a name="index-SSH-1"></a>
-<a name="index-msrcp-1"></a>
-<p>Note that the remote retrieval features of <acronym>NCO</acronym> can always be
-used to retrieve <em>any</em> file, including non-netCDF files, via
-<code>SSH</code>, anonymous <acronym>FTP</acronym>, or <code>msrcp</code>.
-Often this method is quicker than using a browser, or running an
-<acronym>FTP</acronym> session from a shell window yourself.
-<a name="index-server-2"></a>
-For example, say you want to obtain a <acronym>JPEG</acronym> file from a weather
-server.
-</p><div class="example">
-<pre class="example">ncks -R -p ftp://weather.edu/pub/pix/jpeg -l . storm.jpg
-</pre></div>
-<p>In this example, <code>ncks</code> automatically performs an anonymous
-<acronym>FTP</acronym> login to the remote machine and retrieves the specified
-file.
-When <code>ncks</code> attempts to read the local copy of <samp>storm.jpg</samp>
-as a netCDF file, it fails and exits, leaving <samp>storm.jpg</samp> in
-the current directory.
-</p>
-<a name="index-DODS-1"></a>
-<a name="index-server-3"></a>
-<p>If your <acronym>NCO</acronym> is <acronym>DAP</acronym>-enabled (see <a href="#OPeNDAP">OPeNDAP</a>),
-then you may use <acronym>NCO</acronym> to retrieve any files (including netCDF,
-<acronym>HDF</acronym>, etc.) served by an <acronym>OPeNDAP</acronym> server to your local
-machine.
-For example,
-</p><div class="example">
-<pre class="example">ncks -R -l . -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc
-</pre></div>
-<p>It may occasionally be useful to use <acronym>NCO</acronym> to transfer files
-when your other preferred methods are not available locally.
-</p>
-<a name="fl_fmt"></a> <!-- http://nco.sf.net/nco.html#fl_fmt -->
-<a name="hdf"></a> <!-- http://nco.sf.net/nco.html#hdf -->
-<a name="64bit"></a> <!-- http://nco.sf.net/nco.html#64bit -->
-<a name="netcdf4"></a> <!-- http://nco.sf.net/nco.html#netcdf4 --><hr>
-<a name="File-Formats-and-Conversion"></a>
-<div class="header">
-<p>
-Next: <a href="#Large-File-Support" accesskey="n" rel="next">Large File Support</a>, Previous: <a href="#Retaining-Retrieved-Files" accesskey="p" rel="prev">Retaining Retrieved Files</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="File-Formats-and-Conversion-1"></a>
-<h3 class="section">3.9 File Formats and Conversion</h3>
-<a name="index-HDF-1"></a>
-<a name="index-netCDF2-1"></a>
-<a name="index-netCDF3-1"></a>
-<a name="index-netCDF4-1"></a>
-<a name="index-NETCDF4_005fCLASSIC-files"></a>
-<a name="index-NETCDF4-files"></a>
-<a name="index-CLASSIC-files"></a>
-<a name="index-64BIT-files"></a>
-<a name="index-_002d_002d3"></a>
-<a name="index-_002d3-1"></a>
-<a name="index-_002d4-1"></a>
-<a name="index-_002d5"></a>
-<a name="index-_002d6"></a>
-<a name="index-_002d7"></a>
-<a name="index-_002d_002d4"></a>
-<a name="index-_002d_002d5"></a>
-<a name="index-_002d_002d6"></a>
-<a name="index-_002d_002d7"></a>
-<a name="index-_002d_002dnetcdf4"></a>
-<a name="index-_002d_002dfl_005ffmt"></a>
-<a name="index-_002d_002dfile_005fformat"></a>
-<a name="index-_002d_002d64bit"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-3</samp>’, ‘<samp>-4</samp>’, ‘<samp>-6</samp>’, ‘<samp>-7</samp>’<br>
-Long options: ‘<samp>--3</samp>’, ‘<samp>--4</samp>’, ‘<samp>--6</samp>’, ‘<samp>--64bit</samp>’, ‘<samp>--7</samp>’, ‘<samp>--fl_fmt</samp>’,
-‘<samp>--netcdf4</samp>’<br>
-</p></td></tr></table>
-<p>All <acronym>NCO</acronym> operators support (read and write) all three (or four,
-depending on how one counts) file formats supported by netCDF4.
-The default output file format for all operators is the input file
-format.
-The operators listed under “Availability” above allow the user to
-specify the output file format independent of the input file format.
-These operators allow the user to convert between the various file
-formats.
-(The operators <code>ncatted</code> and <code>ncrename</code> do not support
-these switches so they always write the output netCDF file in the same
-format as the input netCDF file.)
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#File-Formats" accesskey="1">File Formats</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Determining-File-Format" accesskey="2">Determining File Format</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#File-Conversion" accesskey="3">File Conversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Autoconversion" accesskey="4">Autoconversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="File-Formats"></a>
-<div class="header">
-<p>
-Next: <a href="#Determining-File-Format" accesskey="n" rel="next">Determining File Format</a>, Previous: <a href="#File-Formats-and-Conversion" accesskey="p" rel="prev">File Formats and Conversion</a>, Up: <a href="#File-Formats-and-Conversion" accesskey="u" rel="up">File Formats and Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="File-Formats-1"></a>
-<h4 class="subsection">3.9.1 File Formats</h4>
-<p>netCDF supports four types of files: <code>CLASSIC</code>, <code>64BIT</code>,
-<code>NETCDF4</code>, and <code>NETCDF4_CLASSIC</code>,
-The <code>CLASSIC</code> format is the traditional 32-bit offset written by
-netCDF2 and netCDF3.
-As of 2005, nearly all netCDF datasets were in <code>CLASSIC</code> format.
-The <code>64BIT</code> format was added in Fall, 2004.
-As of 2010, many netCDF datasets were in <code>64BIT</code> format.
-As of 2013, an increasing number of netCDF datasets were in
-<code>NETCDF4_CLASSIC</code> format.
-</p>
-<p>The <code>NETCDF4</code> format uses <acronym>HDF5</acronym> as the file storage layer.
-The files are (usually) created, accessed, and manipulated using the
-traditional netCDF3 <acronym>API</acronym> (with numerous extensions).
-The <code>NETCDF4_CLASSIC</code> format refers to netCDF4 files created with
-the <code>NC_CLASSIC_MODEL</code> mask.
-Such files use <acronym>HDF5</acronym> as the back-end storage format (unlike
-netCDF3), though they incorporate only netCDF3 features.
-Hence <code>NETCDF4_CLASSIC</code> files are entirely readable by applications
-that use only the netCDF3 <acronym>API</acronym> (though the applications must be
-linked with the netCDF4 library).
-<acronym>NCO</acronym> must be built with netCDF4<!-- /@w --> to write files in the new
-<code>NETCDF4</code> and <code>NETCDF4_CLASSIC</code> formats, and to read files in
-these formats.
-Datasets in the default <code>CLASSIC</code> or the newer <code>64BIT</code> formats
-have maximum backwards-compatibility with older applications.
-<acronym>NCO</acronym> has deep support for <code>NETCDF4</code> formats.
-If performance or disk-space as important as backwards compatibility,
-then use <code>NETCDF4_CLASSIC</code> instead of <code>CLASSIC</code> format files.
-As of 2014, <acronym>NCO</acronym> support for the <code>NETCDF4</code> format is
-nearly complete and the most powerful and disk/<acronym>RAM</acronym> efficient
-workflows will utilize this format.
-</p>
-<p>As mentioned above, all operators write use the input file format for
-output files unless told otherwise.
-Toggling the short option ‘<samp>-6</samp>’ or the long option ‘<samp>--6</samp>’ or
-‘<samp>--64bit</samp>’ (or their <var>key</var>-<var>value</var> equivalent
-‘<samp>--fl_fmt=64bit</samp>’) produces the netCDF3 64-bit offset format named
-<code>64BIT</code>.
-<acronym>NCO</acronym> must be built with netCDF 3.6<!-- /@w --> or higher to produce
-a <code>64BIT</code> file.
-Using the ‘<samp>-4</samp>’ switch (or its long option equivalents
-‘<samp>--4</samp>’ or ‘<samp>--netcdf4</samp>’), or setting its <var>key</var>-<var>value</var>
-equivalent ‘<samp>--fl_fmt=netcdf4</samp>’ produces a <code>NETCDF4</code> file
-(i.e., with all supported <acronym>HDF5</acronym> features).
-Using the ‘<samp>-7</samp>’ switch (or its long option equivalent
-‘<samp>--7</samp>’
-<a name="DOCF28" href="#FOOT28"><sup>28</sup></a>, or
-setting its <var>key</var>-<var>value</var> equivalent
-‘<samp>--fl_fmt=netcdf4_classic</samp>’ produces a <code>NETCDF4_CLASSIC</code>
-file (i.e., with all supported <acronym>HDF5</acronym> features like compression
-and chunking but without groups or new atomic types).
-Operators given the ‘<samp>-3</samp>’ (or ‘<samp>--3</samp>’) switch without arguments
-will (attempt to) produce netCDF3 <code>CLASSIC</code> output, even from
-netCDF4 input files.
-</p>
-<p>Note that <code>NETCDF4</code> and <code>NETCDF4_CLASSIC</code> are the same
-binary format.
-The latter simply causes a writing application to fail if it attempts to
-write a <code>NETCDF4</code> file that cannot be completely read by the
-netCDF3 library.
-Conversely, <code>NETCDF4_CLASSIC</code> indicates to a reading application
-that all of the file contents are readable with the netCDF3 library.
-<acronym>NCO</acronym> has supported reading/writing basic <code>NETCDF4</code> and
-<code>NETCDF4_CLASSIC</code> files since October, 2005.
-</p>
-<a name="fmt_inq"></a> <!-- http://nco.sf.net/nco.html#fmt_inq --><hr>
-<a name="Determining-File-Format"></a>
-<div class="header">
-<p>
-Next: <a href="#File-Conversion" accesskey="n" rel="next">File Conversion</a>, Previous: <a href="#File-Formats" accesskey="p" rel="prev">File Formats</a>, Up: <a href="#File-Formats-and-Conversion" accesskey="u" rel="up">File Formats and Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Determining-File-Format-1"></a>
-<h4 class="subsection">3.9.2 Determining File Format</h4>
-<p>Input files often end with the generic <code>.nc</code> suffix that leaves
-(perhaps by intention) the internal file format ambiguous.
-There are at least three ways to discover the internal format of a
-netCDF-supported file.
-These methods determine whether it is a classic (32-bit offset) or newer
-64-bit offset netCDF3 format, or is a netCDF4 format.
-Each method returns the information using slightly different terminology
-that becomes easier to understand with practice.
-</p>
-<p>First, examine the first line of global metadata output by ‘<samp>ncks -M</samp>’:
-<a name="index-netCDF3-classic-file-format"></a>
-<a name="index-netCDF4-classic-file-format"></a>
-<a name="index-netCDF4-file-format"></a>
-<a name="index-32_002dbit-offset-file-format"></a>
-<a name="index-64_002dbit-offset-file-format"></a>
-<a name="index-ncks"></a>
-<a name="index-_002dM"></a>
-</p><div class="example">
-<pre class="example">% ncks -M foo_3c.nc
-Summary of foo_3c.nc: filetype = NC_FORMAT_CLASSIC, 0 groups ...
-% ncks -M foo_364.nc
-Summary of foo_364.nc: filetype = NC_FORMAT_64BIT, 0 groups ...
-% ncks -M foo_4c.nc
-Summary of foo_4c.nc: filetype = NC_FORMAT_NETCDF4_CLASSIC, 0 groups ...
-% ncks -M foo_4.nc
-Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4, 0 groups ...
-</pre></div>
-<p>This method requires a netCDF4-enabled <acronym>NCO</acronym> version 3.9.0+
-(i.e., from 2007 or later).
-<a name="index-extended-file-format"></a>
-<a name="index-underlying-file-format"></a>
-<a name="index-NC_005fFORMAT_005fNC3"></a>
-<a name="index-NC_005fFORMAT_005fNC_005fHDF5"></a>
-<a name="index-NC_005fFORMAT_005fNC_005fHDF4"></a>
-<a name="index-NC_005fFORMAT_005fPNETCDF"></a>
-<a name="index-NC_005fFORMAT_005fDAP2"></a>
-<a name="index-NC_005fFORMAT_005fDAP4"></a>
-As of <acronym>NCO</acronym> version 4.4.0 (January, 2014), <code>ncks</code> will
-also print the extended or underlying format of the input file.
-The extended filetype will be one of the six underlying formats that
-are accessible through the netCDF <acronym>API</acronym>.
-These formats are
-<code>NC_FORMAT_NC3</code> (classic and 64-bit versions of netCDF3 formats),
-<code>NC_FORMAT_NC_HDF5</code> (classic and extended versions of netCDF4, and
-“pure” HDF5 format),
-<code>NC_FORMAT_NC_HDF4</code> (HDF4 format),
-<code>NC_FORMAT_PNETCDF</code> (PnetCDF format),
-<code>NC_FORMAT_DAP2</code> (accessed via DAP2 protocol), and
-<code>NC_FORMAT_DAP4</code> (accessed via DAP2 protocol).
-For example,
-</p><div class="example">
-<pre class="example">% ncks -D 2 -M hdf.hdf
-Summary of hdf.hdf: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF4), 0 groups ...
-% ncks -D 2 -M http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
-Summary of http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc: \
- filetype = NC_FORMAT_CLASSIC (representation of extended/underlying \
- filetype NC_FORMAT_DAP2), 0 groups
-% ncks -D 2 -M foo_4.nc
-Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF5), 0 groups
-</pre></div>
-<p>The extended filetype determines some of the capabilities that netCDF
-has to alter the file.
-</p>
-<p>Second, query the file with ‘<samp>ncdump -k</samp>’:
-<a name="index-ncdump"></a>
-</p><div class="example">
-<pre class="example">% ncdump -k foo_3c.nc
-classic
-% ncdump -k foo_364.nc
-64-bit-offset
-% ncdump -k foo_4c.nc
-netCDF-4 classic model
-% ncdump -k foo_4.nc
-netCDF-4
-</pre></div>
-<p>This method requires a netCDF4-enabled <acronym>netCDF</acronym> 3.6.2+
-(i.e., from 2007 or later).
-</p>
-<p>The third option uses the POSIX-standard <code>od</code> (octal dump)
-command:
-<a name="index-od"></a>
-<a name="index-octal-dump"></a>
-</p><div class="example">
-<pre class="example">% od -An -c -N4 foo_3c.nc
- C D F 001
-% od -An -c -N4 foo_364.nc
- C D F 002
-% od -An -c -N4 foo_4c.nc
- 211 H D F
-% od -An -c -N4 foo_4.nc
- 211 H D F
-</pre></div>
-<p>This option works without <acronym>NCO</acronym> and <code>ncdump</code>.
-Values of ‘<samp>C D F 001</samp>’ and ‘<samp>C D F 002</samp>’ indicate 32-bit
-(classic) and 64-bit netCDF3 formats, respectively, while values of
-‘<samp>211 H D F</samp>’ indicate either of the newer netCDF4 file formats.
-</p>
-<a name="hdf2nc"></a> <!-- http://nco.sf.net/nco.html#hdf2nc -->
-<a name="3to4"></a> <!-- http://nco.sf.net/nco.html#3to4 -->
-<a name="4to3"></a> <!-- http://nco.sf.net/nco.html#4to3 --><hr>
-<a name="File-Conversion"></a>
-<div class="header">
-<p>
-Next: <a href="#Autoconversion" accesskey="n" rel="next">Autoconversion</a>, Previous: <a href="#Determining-File-Format" accesskey="p" rel="prev">Determining File Format</a>, Up: <a href="#File-Formats-and-Conversion" accesskey="u" rel="up">File Formats and Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="File-Conversion-1"></a>
-<h4 class="subsection">3.9.3 File Conversion</h4>
-<p>Let us demonstrate converting a file from any netCDF-supported
-input format into any netCDF output format (subject to limits of the
-output format).
-Here the input file <samp>in.nc</samp> may be in any of these formats:
-netCDF3 (classic and 64bit), netCDF4 (classic and extended), HDF4, HDF5,
-HDF-EOS (version 2 or 5), and DAP.
-The switch determines the output format written in the comment:
-<a name="DOCF29" href="#FOOT29"><sup>29</sup></a>
-</p><div class="example">
-<pre class="example">ncks --fl_fmt=classic in.nc foo_3c.nc # netCDF3 classic
-ncks --fl_fmt=64bit in.nc foo_364.nc # netCDF3 64bit
-ncks --fl_fmt=netcdf4_classic in.nc foo_4c.nc # netCDF4 classic
-ncks --fl_fmt=netcdf4 in.nc foo_4.nc # netCDF4
-ncks -3 in.nc foo_3c.nc # netCDF3 classic
-ncks --3 in.nc foo_3c.nc # netCDF3 classic
-ncks -6 in.nc foo_364.nc # netCDF3 64bit
-ncks --64 in.nc foo_364.nc # netCDF3 64bit
-ncks -4 in.nc foo_4.nc # netCDF4
-ncks --4 in.nc foo_4.nc # netCDF4
-ncks -7 in.nc foo_4c.nc # netCDF4 classic
-ncks --7 in.nc foo_4c.nc # netCDF4 classic
-</pre></div>
-<p>Of course since most operators support these switches, the
-“conversions” can be done at the output stage of arithmetic
-or metadata processing rather than requiring a separate step.
-Producing (netCDF3) <code>CLASSIC</code> or <code>64BIT</code> files from
-<code>NETCDF4_CLASSIC</code> files will always work.
-</p>
-<a name="autoconversion"></a> <!-- http://nco.sf.net/nco.html#autoconversion -->
-<a name="autocnv"></a> <!-- http://nco.sf.net/nco.html#autocnv --><hr>
-<a name="Autoconversion"></a>
-<div class="header">
-<p>
-Previous: <a href="#File-Conversion" accesskey="p" rel="prev">File Conversion</a>, Up: <a href="#File-Formats-and-Conversion" accesskey="u" rel="up">File Formats and Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Autoconversion-1"></a>
-<h4 class="subsection">3.9.4 Autoconversion</h4>
-<p>Because of the dearth of support for netCDF4 amongst tools and user
-communities (including the <acronym>CF</acronym> conventions), it is often useful
-to convert netCDF4 to netCDF3 for certain applications.
-Until <acronym>NCO</acronym> version 4.4.0 (January, 2014), producing netCDF3
-files from netCDF4 files only worked if the input files contained no
-netCDF4-specific features (e.g., atomic types, multiple record
-dimensions, or groups).
-As of <acronym>NCO</acronym> version 4.4.0, <code>ncks</code> supports
-<em>autoconversion</em> of many netCDF4 features to their closest
-netCDF3-compatible representations.
-Since converting netCDF4 to netCDF3 results in loss of features,
-“automatic down-conversion” may be a more precise description of what
-we term autoconversion.
-</p>
-<p><acronym>NCO</acronym> employs three algorithms to downconvert netCDF4 to netCDF3:
-</p><ol>
-<li> <a name="index-autoconversion"></a>
-Autoconversion of atomic types:
-Autoconversion automatically promotes <code>NC_UBYTE</code> to <code>NC_SHORT</code>,
-and <code>NC_USHORT</code> to <code>NC_INT</code>.
-It automatically demotes the three types <code>NC_UINT</code>,
-<code>NC_UINT64</code>, and <code>NC_INT64</code> to <code>NC_INT</code>.
-And it converts <code>NC_STRING</code> to <code>NC_CHAR</code>.
-All numeric conversions work for attributes and variables of any rank.
-Two numeric types (<code>NC_UBYTE</code> and <code>NC_USHORT</code>) are
-<em>promoted</em> to types with greater range (and greater storage).
-This extra range is often not used so promotion perhaps conveys
-the wrong impression.
-However, promotion never truncates values or loses data (this perhaps
-justifies the extra storage).
-Three numeric types (<code>NC_UINT</code>, <code>NC_UINT64</code> and
-<code>NC_INT64</code>) are <em>demoted</em>.
-Since the input range is larger than the output range, demotion can
-result in numeric truncation and thus loss of data.
-In such cases, it would possible to convert the data to floating point
-values instead.
-If this feature interests you, please be the squeaky wheel and let us
-know.
-
-<p>String conversions (to <code>NC_CHAR</code>) work for all attributes, but
-not for variables.
-This is because attributes are at most one-dimensional and may be of any
-size whereas variables require gridded dimensions that usually do not
-fit the ragged sizes of text strings.
-Hence scalar <code>NC_STRING</code> attributes are correctly converted to and
-stored as <code>NC_CHAR</code> attributes in the netCDF3 output file, but
-<code>NC_STRING</code> variables are not correctly converted.
-If this limitation annoys or enrages you, please let us know by being
-the squeaky wheel.
-</p>
-</li><li> <a name="index-_002d_002dfix_005frec_005fdmn-all"></a>
-Convert multiple record dimensions to fixed-size dimensions.
-Many netCDF4 and <acronym>HDF5</acronym> datasets have multiple unlimited
-dimensions.
-Since a netCDF3 file may have at most one unlimited dimension, all but
-possibly one unlimited dimension from the input file must be converted
-to fixed-length dimensions prior to storing netCDF4 input as netCDF3
-output.
-By invoking <code>--fix_rec_dmn all</code> the user ensures the output file
-will adhere to netCDF3 conventions and the user need not know the names
-of the specific record dimensions to fix.
-See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a> for a description of the
-‘<samp>--fix_rec_dmn</samp>’ option.
-
-</li><li> <a name="index-flattening"></a>
-Flattening (removal) of groups.
-Many netCDF4 and <acronym>HDF5</acronym> datasets have group hierarchies.
-Since a netCDF3 file may not have any groups, groups in the input file
-must be removed.
-This is also called “flattening” the hierarchical file.
-See <a href="#Group-Path-Editing">Group Path Editing</a> for a description of the <acronym>GPE</acronym>
-option ‘<samp>-G :</samp>’ to flatten files.
-</li></ol>
-
-<p>Putting the three algorithms together, one sees that the recipe to
-convert netCDF4 to netCDF4 becomes increasingly complex as the netCDF4
-features in the input file become more elaborate:
-</p><div class="example">
-<pre class="example"># Convert file with netCDF4 atomic types
-ncks -3 in.nc4 out.nc3
-# Convert file with multiple record dimensions + netCDF4 atomic types
-ncks -3 --fix_rec_dmn=all in.nc4 out.nc3
-# Convert file with groups, multiple record dimensions + netCDF4 atomic types
-ncks -3 -G : --fix_rec_dmn=all in.nc4 out.nc3
-</pre></div>
-<p>Future versions of <acronym>NCO</acronym> may automatically invoke the record
-dimension fixation and group flattening when converting to netCDF3
-(rather than requiring it be specified manually).
-If this feature would interest you, please let us know.
-</p>
-<a name="lfs"></a> <!-- http://nco.sf.net/nco.html#lfs --><hr>
-<a name="Large-File-Support"></a>
-<div class="header">
-<p>
-Next: <a href="#Subsetting-Files" accesskey="n" rel="next">Subsetting Files</a>, Previous: <a href="#File-Formats-and-Conversion" accesskey="p" rel="prev">File Formats and Conversion</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Large-File-Support-1"></a>
-<h3 class="section">3.10 Large File Support</h3>
-<a name="index-LFS-1"></a>
-<a name="index-Large-File-Support-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: none<br>
-Long options: none<br>
-</p></td></tr></table>
-<p><acronym>NCO</acronym> has Large File Support (<acronym>LFS</acronym>), meaning that
-<acronym>NCO</acronym> can write files larger than 2 GB<!-- /@w --> on some 32-bit
-operating systems with netCDF libraries earlier than version 3.6<!-- /@w -->.
-If desired, <acronym>LFS</acronym> support must be configured when both netCDF and
-<acronym>NCO</acronym> are installed.
-netCDF versions 3.6<!-- /@w --> and higher support 64-bit file addresses as part
-of the netCDF standard.
-We recommend that users ignore <acronym>LFS</acronym> support which is difficult to
-configure and is implemented in <acronym>NCO</acronym> only to support netCDF
-versions prior to 3.6<!-- /@w -->.
-This obviates the need for configuring explicit <acronym>LFS</acronym> support in
-applications (such as <acronym>NCO</acronym>) that now support 64-bit files
-directly through the netCDF interface.
-See <a href="#File-Formats-and-Conversion">File Formats and Conversion</a> for instructions on accessing
-the different file formats, including 64-bit files, supported by the
-modern netCDF interface.
-</p>
-<p>If you are still interested in explicit <acronym>LFS</acronym> support for netCDF versions
-prior to 3.6<!-- /@w -->, know that <acronym>LFS</acronym> support depends on a complex,
-interlocking set of operating system
-<a name="DOCF30" href="#FOOT30"><sup>30</sup></a>
-and netCDF support issues.
-The netCDF <acronym>LFS</acronym>
-<a href="http://my.unidata.ucar.edu/content/software/netcdf/faq-lfs.html">FAQ</a>
-describes the various file size limitations imposed by different
-versions of the netCDF standard.
-<acronym>NCO</acronym> and netCDF automatically attempt to configure <acronym>LFS</acronym> at
-build time.
-</p>
-<a name="x"></a> <!-- http://nco.sf.net/nco.html#x -->
-<a name="grp"></a> <!-- http://nco.sf.net/nco.html#grp -->
-<a name="var"></a> <!-- http://nco.sf.net/nco.html#var -->
-<a name="xcl"></a> <!-- http://nco.sf.net/nco.html#xcl -->
-<a name="sbs"></a> <!-- http://nco.sf.net/nco.html#sbs -->
-<a name="subset"></a> <!-- http://nco.sf.net/nco.html#subset --><hr>
-<a name="Subsetting-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Subsetting-Coordinate-Variables" accesskey="n" rel="next">Subsetting Coordinate Variables</a>, Previous: <a href="#Large-File-Support" accesskey="p" rel="prev">Large File Support</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Subsetting-Files-1"></a>
-<h3 class="section">3.11 Subsetting Files</h3>
-<a name="index-subsetting"></a>
-<a name="index-union"></a>
-<a name="index-intersection"></a>
-<a name="index-exclusion"></a>
-<a name="index-extraction"></a>
-<a name="index-_002dv-var"></a>
-<a name="index-_002d_002dvariable-var"></a>
-<a name="index-_002dg-grp"></a>
-<a name="index-_002d_002dgrp-grp"></a>
-<a name="index-_002d_002dgroup-grp"></a>
-<a name="index-_002dx"></a>
-<a name="index-_002d_002dexclude"></a>
-<a name="index-_002d_002dxcl"></a>
-<a name="index-_002d_002dunn"></a>
-<a name="index-_002d_002dunion"></a>
-<a name="index-_002d_002dgxvx"></a>
-<a name="index-_002d_002dgrp_005fxtr_005fvar_005fxcl"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Options <code>-g <var>grp</var></code><br>
-Availability: <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-g</samp>’<br>
-Long options: ‘<samp>--grp</samp>’ and ‘<samp>--group</samp>’<br>
-Options <code>-v <var>var</var></code> and <code>-x</code><br>
-Availability: (<code>ncap2</code>), <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-v</samp>’, ‘<samp>-x</samp>’<br>
-Long options: ‘<samp>--variable</samp>’, ‘<samp>--exclude</samp>’ or ‘<samp>--xcl</samp>’<br>
-Options <code>--unn</code><br>
-Availability: <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: <br>
-Long options: ‘<samp>--unn</samp>’ and ‘<samp>--union</samp>’<br>
-Options <code>--grp_xtr_var_xcl</code><br>
-Availability: <code>ncks</code><br>
-Short options: <br>
-Long options: ‘<samp>--gxvx</samp>’ and ‘<samp>--grp_xtr_var_xcl</samp>’<br>
-</p></td></tr></table>
-<p>Subsetting variables refers to explicitly specifying variables and
-groups to be included or excluded from operator actions.
-Subsetting is controlled by the ‘<samp>-v <var>var</var>[,…]</samp>’ and
-‘<samp>-x</samp>’ options for directly specifying variables.
-Specifying groups, whether in addition to or instead of variables,
-is quite similar and is controlled by the ‘<samp>-g <var>grp</var>[,…]</samp>’
-and ‘<samp>-x</samp>’ options.
-A list<!-- /@w --> of variables or groups to extract is specified following the
-‘<samp>-v</samp>’ and ‘<samp>-g</samp>’ options, e.g., ‘<samp>-v time,lat,lon</samp>’ or
-‘<samp>-g grp1,grp2</samp>’.
-Both options may be specified simultaneously and <acronym>NCO</acronym> will
-extract the intersection of the lists, i.e., only variables of the
-specified names found in groups of the specified names.
-The ‘<samp>--unn</samp>’ option causes <acronym>NCO</acronym> to extract the
-union, rather than the intersection, of the specified groups and
-variables.
-Not using the ‘<samp>-v</samp>’ or ‘<samp>-g</samp>’ option is equivalent to specifying
-all variables or groupp, respectively.
-The ‘<samp>-x</samp>’ option causes the list of variables specified with
-‘<samp>-v</samp>’ to be <em>excluded</em> rather than <em>extracted</em>.
-Thus ‘<samp>-x</samp>’ saves typing when you only want to extract fewer than
-half of the variables in a file.
-</p>
-<p>Variables or groups explicitly specified for extraction with
-‘<samp>-v <var>var</var>[,…]</samp>’ or ‘<samp>-g <var>grp</var>[,…]</samp>’
-<em>must</em> be present in the input file or an error will result.
-Variables explicitly specified for <em>exclusion</em> with
-‘<samp>-x -v <var>var</var>[,…]</samp>’ need not be present in the input
-file.
-To accord with the sophistication of the underlying hierarchy,
-group subsetting is controlled by a few powerful yet subtle syntactical
-distinctions.
-When learning this syntax it is helpful to keep in mind the similarity
-between group hierarchies and directory structures.
-</p>
-<a name="gxvx"></a> <!-- http://nco.sf.net/nco.html#gxvx -->
-<a name="grp_xtr_var_xcl"></a> <!-- http://nco.sf.net/nco.html#grp_xtr_var_xcl --><p>As of <acronym>NCO</acronym> 4.4.4 (June, 2014), <code>ncks</code> (alone) supports
-an option to include specified groups yet exclude specified variables.
-The ‘<samp>--grp_xtr_var_xcl</samp>’ switch (with long option equivalent
-‘<samp>--gxvx</samp>’) extracts all contents of groups given as arguments to
-‘<samp>-g <var>grp</var>[,…]</samp>’, except for variables given as arguments
-to ‘<samp>-v <var>var</var>[,…]</samp>’.
-Use this when one or a few variables in hierarchical files are not to be
-extracted, and all other variables are.
-This is useful when coercing netCDF4 files into netCDF3 files such as
-with converting, flattening, or dismembering files
-(see <a href="#Flattening-Groups">Flattening Groups</a>).
-</p><div class="example">
-<pre class="example">ncks --grp_xtr_var_xcl -g g1 -v v1 # Extract all of group g1 except v1
-</pre></div>
-
-<a name="index-mv"></a>
-<a name="index-cp"></a>
-<a name="index-recursion"></a>
-<a name="index-recursive"></a>
-<a name="index-anchor"></a>
-<a name="index-anchoring"></a>
-<a name="rcr"></a> <!-- http://nco.sf.net/nco.html#rcr -->
-<a name="recursion"></a> <!-- http://nco.sf.net/nco.html#recursion -->
-<a name="recursive"></a> <!-- http://nco.sf.net/nco.html#recursive -->
-<a name="ncr"></a> <!-- http://nco.sf.net/nco.html#ncr -->
-<a name="anchor"></a> <!-- http://nco.sf.net/nco.html#anchor -->
-<a name="anchoring"></a> <!-- http://nco.sf.net/nco.html#anchoring --><p>Two properties of subsetting, recursion and anchoring, are best
-illustrated by reminding the user of their <acronym>UNIX</acronym> equivalents.
-The <acronym>UNIX</acronym> command <code>mv src dst</code> moves <samp>src</samp>
-<em>and all its subdirectories</em> (and all their subdirectories etc.)
-to <samp>dst</samp>.
-In other words <code>mv</code> is, by default, <em>recursive</em>.
-In contrast, the <acronym>UNIX</acronym> command <code>cp src dst</code> moves
-<samp>src</samp>, and only <samp>src</samp>, to <samp>dst</samp>,
-If <samp>src</samp> is a directory, not a file, then that command fails.
-One must explicitly request to copy directories recursively, i.e.,
-with <code>cp -r src dst</code>.
-In <acronym>NCO</acronym> recursive extraction (and copying) of groups is the
-default (like with <code>mv</code>, not with <code>cp</code>).
-Recursion is turned off by appending a trailing slash to the path.
-</p>
-<p>These <acronym>UNIX</acronym> commands also illustrate a property we call
-<em>anchoring</em>.
-The command <code>mv src dst</code> moves (recursively) the source
-directory <samp>src</samp> to the destination directory <samp>dst</samp>.
-If <samp>src</samp> begins with the slash character then the specified path is
-relative to the root directory, otherwise the path is relative to the
-current working directory.
-In other words, an initial slash character anchors the subsequent path
-to the root directory.
-In <acronym>NCO</acronym> an initial slash anchors the path at the root group.
-Paths that begin and end with slash characters (e.g., <samp>//</samp>,
-<samp>/g1/</samp>, and <samp>/g1/g2/</samp>) are both anchored and non-recursive.
-</p>
-<p>Consider the following commands, all of which may be assumed to end with
-‘<samp>in.nc out.nc</samp>’:
-</p><div class="example">
-<pre class="example">ncks -g g1 # Extract, recursively, all groups with a g1 component
-ncks -g g1/ # Extract, non-recursively, all groups terminating in g1
-ncks -g /g1 # Extract, recursively, root group g1
-ncks -g /g1/ # Extract, non-recursively root group g1
-ncks -g // # Extract, non-recursively the root group
-</pre></div>
-<p>The first command is probably the most useful and common.
-It would extract these groups, if present, and all their direct
-ancestors and children:
-<samp>/g1</samp>, <samp>/g2/g1</samp>, and <samp>/g3/g1/g2</samp>.
-In other words, the simplest form of ‘<samp>-g grp</samp>’ grabs all groups that
-(and their direct ancestors and children, recursively) that have
-<samp>grp</samp> as a complete component of their path.
-A simple string match is insufficient, <var>grp</var> must be a complete
-component (i.e., group name) in the path.
-The option ‘<samp>-g g1</samp>’ would not extract these groups because <samp>g1</samp>
-is not a complete component of the path: <samp>/g12</samp>, <samp>/fg1</samp>, and
-<samp>/g1g1</samp>.
-The second command above shows how a terminating slash character
-<kbd>/</kbd> cancels the recursive copying of groups.
-An argument to ‘<samp>-g</samp>’ which terminates with a slash character
-extracts the group and its direct ancestors, but none of its children.
-The third command above shows how an initial slash character <kbd>/</kbd>
-anchors the argument to the root group.
-The third command would not extract the group <samp>/g2/g1</samp> because
-the <samp>g1</samp> group is not at the root level, but it would extract,
-any group <samp>/g1</samp> at the root level and all its children,
-recursively.
-The fourth command is the non-recursive version of the third command.
-The fifth command is a special case of the fourth command.
-</p>
-<a name="unn"></a> <!-- http://nco.sf.net/nco.html#unn -->
-<a name="nsx"></a> <!-- http://nco.sf.net/nco.html#nsx -->
-<a name="union"></a> <!-- http://nco.sf.net/nco.html#union -->
-<a name="intersection"></a> <!-- http://nco.sf.net/nco.html#intersection --><a name="index-union-1"></a>
-<a name="index-intersection-1"></a>
-<a name="index-_002d_002dunn-1"></a>
-<a name="index-_002d_002dunion-1"></a>
-<a name="index-_002d_002dnsx"></a>
-<a name="index-_002d_002dintersection"></a>
-<p>As mentioned above, both ‘<samp>-v</samp>’ and ‘<samp>-g</samp>’ options may be
-specified simultaneously and <acronym>NCO</acronym> will, by default, extract the
-intersection of the lists, i.e., the specified variables found in the
-specified groups
-<a name="DOCF31" href="#FOOT31"><sup>31</sup></a>.
-The ‘<samp>--unn</samp>’ option causes <acronym>NCO</acronym> to extract the
-union, rather than the intersection, of the specified groups and
-variables.
-Consider the following commands (which may be assumed to end with
-‘<samp>in.nc out.nc</samp>’):
-</p><div class="example">
-<pre class="example"># Intersection-mode subsetting (default)
-ncks -g g1 -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1
-ncks -g /g1 -v v1 # Yes: /g1/v1, /g1/g2/v1. No: /v1, /g2/v1, /g2/g1/v1
-ncks -g g1/ -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
-ncks -v g1/v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
-ncks -g /g1/ -v v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
-ncks -v /g1/v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
-
-# Union-mode subsetting (invoke with --unn or --union)
-ncks -g g1 -v v1 --unn # All variables in g1 or progeny, or named v1
-ncks -g /g1 -v v1 --unn # All variables in /g1 or progeny, or named v1
-ncks -g g1/ -v v1 --unn # All variables in g1 or named v1
-ncks -g /g1/ -v v1 --unn # All variables in /g1 or named v1
-</pre></div>
-<p>The first command (‘<samp>-g g1 -v v1</samp>’) extracts the variable <samp>v1</samp>
-from any group named <samp>g1</samp> or descendent <samp>g1</samp>.
-The second command extracts <samp>v1</samp> from any root group
-named <samp>g1</samp> and any descendent groups as well.
-The third and fourth commands are equivalent ways of extracting
-<samp>v1</samp> only from the root group named <samp>g1</samp> (not its
-descendents).
-The fifth and sixth commands are equivalent ways of extracting the
-variable <samp>v1</samp> only from the root group named <samp>g1</samp>.
-Subsetting in union-mode (with ‘<samp>--unn</samp>’) causes all variables to be
-extracted which meet either one or both of the specifications of the
-variable and group specifications.
-Union-mode subsetting is simply the logical “OR” of intersection-mode
-subsetting.
-As discussed below, the group and variable specifications may be comma
-separated lists of regular expressions for added control over
-subsetting.
-</p>
-<a name="index-memory-requirements-1"></a>
-<p>Remember, if averaging or concatenating large files stresses your
-systems memory or disk resources, then the easiest solution is often to
-subset (with ‘<samp>-g</samp>’ and/or ‘<samp>-v</samp>’) to retain only the most
-important variables (see <a href="#Memory-Requirements">Memory Requirements</a>).
-</p><div class="example">
-<pre class="example">ncks in.nc out.nc # Extract all groups and variables
-ncks -v scl # Extract variable scl from all groups
-ncks -g g1 # Extract group g1 and descendents
-ncks -x -g g1 # Extract all groups except g1 and descendents
-ncks -g g2,g3 -v scl # Extract scl from groups g2 and g3
-</pre></div>
-<p>Overwriting and appending work as expected:
-</p><div class="example">
-<pre class="example"># Replace scl in group g2 in out.nc with scl from group g2 from in.nc
-ncks -A -g g2 -v scl in.nc out.nc
-</pre></div>
-
-<p>Due to its special capabilities, <code>ncap2</code> interprets the
-‘<samp>-v</samp>’ switch differently
-(see <a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a>).
-For <code>ncap2</code>, the ‘<samp>-v</samp>’ switch takes no arguments and
-indicates that <em>only</em> user-defined variables should be output.
-<code>ncap2</code> neither accepts nor understands the <var>-x</var> and
-<var>-g</var> switches.
-</p>
-<a name="rx"></a> <!-- http://nco.sf.net/nco.html#rx -->
-<a name="wildcarding"></a> <!-- http://nco.sf.net/nco.html#wildcarding --><a name="index-extended-regular-expressions-1"></a>
-<a name="index-regular-expressions-2"></a>
-<a name="index-pattern-matching-1"></a>
-<a name="index-wildcards-1"></a>
-<a name="index-grep-_002dE"></a>
-<a name="index-egrep"></a>
-<a name="index-ncatted"></a>
-<a name="index-GNU-1"></a>
-<p>Regular expressions the syntax that <acronym>NCO</acronym> use pattern-match
-object names in netCDF file against user requests.
-The user can select all variables beginning with the string ‘<samp>DST</samp>’
-from an input file by supplying the regular expression ‘<samp>^DST</samp>’ to
-the ‘<samp>-v</samp>’ switch, i.e., ‘<samp>-v '^DST'</samp>’.
-The meta-characters used to express pattern matching operations are
-‘<samp>^$+?.*[]{}|</samp>’.
-If the regular expression pattern matches <em>any</em> part of a variable
-name then that variable is selected.
-This capability is also called <em>wildcarding</em>, and is very useful for
-sub-setting large data files.
-</p>
-<p>Extended regular expressions are defined by the <acronym>POSIX</acronym>
-<code>grep -E</code> (aka <code>egrep</code>) command.
-As of <acronym>NCO</acronym> 2.8.1 (August, 2003), variable name arguments
-to the ‘<samp>-v</samp>’ switch may contain <em>extended regular expressions</em>.
-As of <acronym>NCO</acronym> 3.9.6 (January, 2009), variable names arguments
-to <code>ncatted</code> may contain <em>extended regular expressions</em>.
-As of <acronym>NCO</acronym> 4.2.4 (November, 2012), group name arguments
-to the ‘<samp>-g</samp>’ switch may contain <em>extended regular expressions</em>.
-</p>
-<a name="index-POSIX-1"></a>
-<a name="index-regex"></a>
-<p>Because of its wide availability, <acronym>NCO</acronym> uses the <acronym>POSIX</acronym>
-regular expression library <code>regex</code>.
-Regular expressions of arbitary complexity may be used.
-Since netCDF variable names are relatively simple constructs, only a
-few varieties of variable wildcards are likely to be useful.
-For convenience, we define the most useful pattern matching operators
-here:
-<a name="index-_002e-_0028wildcard-character_0029"></a>
-<a name="index-_0024-_0028wildcard-character_0029"></a>
-<a name="index-_005e-_0028wildcard-character_0029"></a>
-<a name="index-_003f-_0028filename-expansion_0029"></a>
-<a name="index-_002a-_0028filename-expansion_0029"></a>
-</p><dl compact="compact">
-<dt>‘<samp>^</samp>’</dt>
-<dd><p>Matches the beginning of a string
-</p></dd>
-<dt>‘<samp>$</samp>’</dt>
-<dd><p>Matches the end of a string
-</p></dd>
-<dt>‘<samp>.</samp>’</dt>
-<dd><p>Matches any single character
-</p></dd>
-</dl>
-<p>The most useful repetition and combination operators are
-<a name="index-_003f-_0028wildcard-character_0029"></a>
-<a name="index-_002a-_0028wildcard-character_0029"></a>
-<a name="index-_002b-_0028wildcard-character_0029"></a>
-<a name="index-_007c-_0028wildcard-character_0029"></a>
-</p><dl compact="compact">
-<dt>‘<samp>?</samp>’</dt>
-<dd><p>The preceding regular expression is optional and matched at most once
-</p></dd>
-<dt>‘<samp>*</samp>’</dt>
-<dd><p>The preceding regular expression will be matched zero or more times
-</p></dd>
-<dt>‘<samp>+</samp>’</dt>
-<dd><p>The preceding regular expression will be matched one or more times
-</p></dd>
-<dt>‘<samp>|</samp>’</dt>
-<dd><p>The preceding regular expression will be joined to the following regular
-expression.
-The resulting regular expression matches any string matching either
-subexpression.
-</p></dd>
-</dl>
-
-<p>To illustrate the use of these operators in extracting variables
-and groups, consider file <samp>in_grp.nc</samp> with groups
-<code>g0</code>–<code>g9</code>, and subgroups <code>s0</code>–<code>s9</code>, in each of
-those groups, and file <samp>in.nc</samp> with variables <code>Q</code>,
-<code>Q01</code>–<code>Q99</code>, <code>Q100</code>, <code>QAA</code>–<code>QZZ</code>,
-<code>Q_H2O</code>, <code>X_H2O</code>, <code>Q_CO2</code>, <code>X_CO2</code>.
-</p><div class="example">
-<pre class="verbatim">ncks -v '.+' in.nc # All variables (default)
-ncks -v 'Q.?' in.nc # Variables that contain Q
-ncks -v '^Q.?' in.nc # Variables that start with Q
-ncks -v '^Q+.?.' in.nc # Q, Q0--Q9, Q01--Q99, QAA--QZZ, etc.
-ncks -v '^Q..' in.nc # Q01--Q99, QAA--QZZ, etc.
-ncks -v '^Q[0-9][0-9]' in.nc # Q01--Q99, Q100
-ncks -v '^Q[[:digit:]]{2}' in.nc # Q01--Q99
-ncks -v 'H2O$' in.nc # Q_H2O, X_H2O
-ncks -v 'H2O$|CO2$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
-ncks -v '^Q[0-9][0-9]$' in.nc # Q01--Q99
-ncks -v '^Q[0-6][0-9]|7[0-3]' in.nc # Q01--Q73, Q100
-ncks -v '(Q[0-6][0-9]|7[0-3])$' in.nc # Q01--Q73
-ncks -v '^[a-z]_[a-z]{3}$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
-ncks -g 'g.' in_grp.nc # 10 Groups g0-g9
-ncks -g 's.' in_grp.nc # 100 sub-groups g0/s0, g0/s1, ... g9/s9
-ncks -g 'g.' -v 'v.' in_grp.nc # All variables 'v.' in groups 'g.'
-</pre></div>
-<p>Beware—two of the most frequently used repetition pattern matching
-operators, ‘<samp>*</samp>’ and ‘<samp>?</samp>’, are also valid pattern matching
-operators for filename expansion (globbing) at the shell-level.
-Confusingly, their meanings in extended regular expressions and in
-shell-level filename expansion are significantly different.
-In an extended regular expression, ‘<samp>*</samp>’ matches zero or more
-occurences of the preceding regular expression.
-Thus ‘<samp>Q*</samp>’ selects all variables, and ‘<samp>Q+.*</samp>’ selects all
-variables containing ‘<samp>Q</samp>’ (the ‘<samp>+</samp>’ ensures the preceding item
-matches at least once).
-To match zero or one occurence of the preceding regular expression,
-use ‘<samp>?</samp>’.
-Documentation for the <acronym>UNIX</acronym> <code>egrep</code> command details the
-extended regular expressions which <acronym>NCO</acronym> supports.
-</p>
-<a name="globbing"></a> <!-- http://nco.sf.net/nco.html#globbing -->
-<a name="glb"></a> <!-- http://nco.sf.net/nco.html#glb --><a name="index-globbing-2"></a>
-<a name="index-shell-1"></a>
-<a name="index-bash"></a>
-<a name="index-csh"></a>
-<a name="index-quotes"></a>
-<p>One must be careful to protect any special characters in the regular
-expression specification from being interpreted (globbed) by the shell.
-This is accomplish by enclosing special characters within single or
-double quotes
-</p><div class="example">
-<pre class="example">ncra -v Q?? in.nc out.nc # Error: Shell attempts to glob wildcards
-ncra -v '^Q+..' in.nc out.nc # Correct: NCO interprets wildcards
-ncra -v '^Q+..' in*.nc out.nc # Correct: NCO interprets, Shell globs
-</pre></div>
-<p>The final example shows that commands may use a combination of variable
-wildcarding and shell filename expansion (globbing).
-For globbing, ‘<samp>*</samp>’ and ‘<samp>?</samp>’ <em>have nothing to do</em> with the
-preceding regular expression!
-In shell-level filename expansion, ‘<samp>*</samp>’ matches any string,
-including the null string and ‘<samp>?</samp>’ matches any single character.
-Documentation for <code>bash</code> and <code>csh</code> describe the rules of
-filename expansion (globbing).
-</p>
-<a name="crd"></a> <!-- http://nco.sf.net/nco.html#crd -->
-<a name="-C"></a> <!-- http://nco.sf.net/nco.html#-C -->
-<a name="-c"></a> <!-- http://nco.sf.net/nco.html#-c --><hr>
-<a name="Subsetting-Coordinate-Variables"></a>
-<div class="header">
-<p>
-Next: <a href="#Group-Path-Editing" accesskey="n" rel="next">Group Path Editing</a>, Previous: <a href="#Subsetting-Files" accesskey="p" rel="prev">Subsetting Files</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Subsetting-Coordinate-Variables-1"></a>
-<h3 class="section">3.12 Subsetting Coordinate Variables</h3>
-<a name="index-subsetting-1"></a>
-<a name="index-_002dC"></a>
-<a name="index-_002dc"></a>
-<a name="index-_002d_002dno_002dcoords"></a>
-<a name="index-_002d_002dno_002dcrd"></a>
-<a name="index-_002d_002dcoords"></a>
-<a name="index-_002d_002dcrd"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-C</samp>’, ‘<samp>-c</samp>’<br>
-Long options: ‘<samp>--no-coords</samp>’, ‘<samp>--no-crd</samp>’, ‘<samp>--crd</samp>’, ‘<samp>--coords</samp>’<br>
-</p></td></tr></table>
-<p>By default, coordinates variables associated with any variable appearing
-in the <var>input-file</var> will be placed in the <var>output-file</var>, even
-if they are not explicitly specified, e.g., with the ‘<samp>-v</samp>’ switch.
-Thus variables with a latitude coordinate <code>lat</code> always carry the
-values of <code>lat</code> with them into the <var>output-file</var>.
-This feature can be disabled with ‘<samp>-C</samp>’, which causes <acronym>NCO</acronym>
-to not automatically add coordinates to the variables appearing in the
-<var>output-file</var>.
-However, using ‘<samp>-C</samp>’ does not preclude the user from including some
-coordinates in the output files simply by explicitly selecting the
-coordinates with the <var>-v</var> option.
-The ‘<samp>-c</samp>’ option, on the other hand, is a shorthand way of
-automatically specifying that <em>all</em> coordinate variables in the
-<var>input-files</var> should appear in the <var>output-file</var>.
-Thus ‘<samp>-c</samp>’ allows the user to select all the coordinate variables
-without having to know their names.
-<a name="index-CF-conventions"></a>
-As of <acronym>NCO</acronym> version 4.4.5 (July, 2014)
-both ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’ honor the <acronym>CF</acronym> <code>ancillary_variables</code>
-convention described in <a href="#CF-Conventions">CF Conventions</a>.
-As of <acronym>NCO</acronym> version 4.0.8 (April, 2011)
-both ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’ honor the <acronym>CF</acronym> <code>bounds</code>
-convention described in <a href="#CF-Conventions">CF Conventions</a>.
-As of <acronym>NCO</acronym> version 3.9.6 (January, 2009)
-both ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’ honor the <acronym>CF</acronym> <code>coordinates</code>
-convention described in <a href="#CF-Conventions">CF Conventions</a>.
-</p>
-<a name="gpe"></a> <!-- http://nco.sf.net/nco.html#gpe --><hr>
-<a name="Group-Path-Editing"></a>
-<div class="header">
-<p>
-Next: <a href="#C-and-Fortran-Index-Conventions" accesskey="n" rel="next">C and Fortran Index Conventions</a>, Previous: <a href="#Subsetting-Coordinate-Variables" accesskey="p" rel="prev">Subsetting Coordinate Variables</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Group-Path-Editing-1"></a>
-<h3 class="section">3.13 Group Path Editing</h3>
-<a name="index-_002dG-gpe_005fdsc"></a>
-<a name="index-_002d_002dgpe-gpe_005fdsc"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Options <code>-G <var>gpe_dsc</var></code><br>
-Availability: <code>ncbo</code>, <code>ncecat</code>, <code>nces</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-G</samp>’<br>
-Long options: ‘<samp>--gpe</samp>’<br>
-</p></td></tr></table>
-
-<p><em>Group Path Editing</em>, or <acronym>GPE</acronym>, allows the user to
-restructure (i.e., add, remove, and rename groups) in the output file
-relative to the input file based on the instructions they provide.
-As of <acronym>NCO</acronym> 4.2.3 (November, 2012), all operators that accept
-netCDF4 files with groups accept the ‘<samp>-G</samp>’ switch, or its
-long-option equivalent ‘<samp>--gpe</samp>’.
-To master <acronym>GPE</acronym> one must understand the meaning of the
-required <var>gpe_dsc</var> structure/argument that specifies the
-transformation of input-to-output group paths.
-</p>
-<p>Each <var>gpe_dsc</var> contains up to three elements (two are optional) in
-the following order:<br>
-<var>gpe_dsc</var> = <var>grp_pth</var>:<var>lvl_nbr</var> or <var>grp_pth</var>@<var>lvl_nbr</var>
-</p>
-<dl compact="compact">
-<dt><var>grp_pth</var></dt>
-<dd><p>Group Path.
-<a name="index-group-path"></a>
-This (optional) component specifies the output group path that should be
-appended after any editing (i.e., deletion or truncation) of the input
-path is performed.
-</p></dd>
-<dt><var>lvl_nbr</var></dt>
-<dd><p>The number of levels to delete (from the head) or truncate (from the
-tail) of the input path.
-</p></dd>
-</dl>
-<p>If both components of the argument are present, then a single character,
-either the colon or at-sign (<code>:</code> or <code>@</code>), must separate them.
-If only <var>grp_pth</var> is specifed, the separator character may be
-omitted, e.g., ‘<samp>-G g1</samp>’.
-If only <var>lvl_nbr</var> is specifed, the separator character is still
-required to indicate it is a <var>lvl_nbr</var> arugment and not a
-<var>grp_pth</var>, e.g., ‘<samp>-G :-1</samp>’ or ‘<samp>-G @1</samp>’.
-</p>
-<p>If the at-sign separator character <code>@</code> is used instead of the colon
-separator character <code>:</code>, then the following <var>lvl_nbr</var> arugment
-must be positive and it will be assumed to refer to Truncation-Mode.
-Hence, ‘<samp>-G :-1</samp>’ is the same as ‘<samp>-G @1</samp>’.
-This is simply a way of making the <var>lvl_nbr</var> argument
-positive-definite.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Flattening-Groups" accesskey="1">Flattening Groups</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Moving-Groups" accesskey="2">Moving Groups</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Dismembering-Files" accesskey="3">Dismembering Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Checking-CF_002dcompliance" accesskey="4">Checking CF-compliance</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-<hr>
-<a name="Flattening-Groups"></a>
-<div class="header">
-<p>
-Next: <a href="#Moving-Groups" accesskey="n" rel="next">Moving Groups</a>, Previous: <a href="#Group-Path-Editing" accesskey="p" rel="prev">Group Path Editing</a>, Up: <a href="#Group-Path-Editing" accesskey="u" rel="up">Group Path Editing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Deletion_002c-Truncation_002c-and-Flattening-of-Groups"></a>
-<h4 class="subsection">3.13.1 Deletion, Truncation, and Flattening of Groups</h4>
-<a name="flatten"></a> <!-- http://nco.sf.net/nco.html#flatten -->
-<a name="delete"></a> <!-- http://nco.sf.net/nco.html#delete -->
-<a name="truncate"></a> <!-- http://nco.sf.net/nco.html#truncate --><a name="index-_0040-_0028separator-character_0029"></a>
-<a name="index-_003a-_0028separator-character_0029"></a>
-<a name="index-delete-_0028groups_0029"></a>
-<a name="index-truncate-_0028groups_0029"></a>
-<a name="index-flatten-_0028groups_0029"></a>
-<p><acronym>GPE</acronym> has three editing modes: Delete, Truncate, and
-Flatten.
-Select one of <acronym>GPE</acronym>’s three editing modes by supplying a
-<var>lvl_nbr</var> that is positive, negative, or zero for Delete-,
-Truncate- and Flatten-mode, respectively.
-</p>
-<p>In Delete-mode, <var>lvl_nbr</var> is a positive integer which specifies
-the maximum number of group path components (i.e., groups) that
-<acronym>GPE</acronym> will try to delete from the head of <var>grp_pth</var>.
-For example <em><var>lvl_nbr</var> = 3</em> changes the input path
-<samp>/g1/g2/g3/g4/g5</samp> to the output path <samp>/g4/g5</samp>.
-Input paths with <var>lvl_nbr</var> or fewer components (groups)
-are completely erased and the output path commences from the root
-level.
-</p>
-<p>In other words, <acronym>GPE</acronym> is tolerant of specifying too many group
-components to delete.
-It deletes as many as possible, without complaint, and then begins to
-flatten the file (which will fail if namespace conflicts arise).
-</p>
-<p>In Truncate-mode, <var>lvl_nbr</var> is a negative integer which specifies
-the maximum number of group path components (i.e., groups) that
-<acronym>GPE</acronym> will try to truncate from the tail of <var>grp_pth</var>.
-For example <em><var>lvl_nbr</var> = -3</em> changes the input path
-<samp>/g1/g2/g3/g4/g5</samp> to the output path <samp>/g1/g2</samp>.
-Input paths with <var>lvl_nbr</var> or fewer components (groups)
-are completely erased and the output path commences from the root
-level.
-</p>
-<p>In Flatten-mode, indicated by the separator character alone
-or with <em><var>lvl_nbr</var> = 0</em>, <acronym>GPE</acronym> removes the entire group
-path from the input file and constructs the output path beginning at the
-root level.
-For example <code>-G :0</code> and <code>-G :</code> are identical and change the
-input path <samp>/g1/g2/g3/g4/g5</samp> to the output path <samp>/</samp> whereas
-<code>-G g1:0</code> and <code>-G g1:</code> are identical and result in the output
-path <samp>/g1</samp> for all variables.
-</p>
-<p>Subsequent to the alteration of the input path by the specified
-editing mode, if any, <acronym>GPE</acronym> prepends (in Delete Mode)
-or Appends (in Truncate-mode) any specifed <var>grp_pth</var> to the output
-path.
-For example <code>-G g2</code> changes the input paths <samp>/</samp> and <samp>/g1</samp>
-to <samp>/g2</samp> and <samp>/g1/g2</samp>, respectively.
-Likewise, <code>-G g2/g3</code> changes the input paths <samp>/</samp> and <samp>/g1</samp>
-to <samp>/g2/g3</samp> and <samp>/g1/g2/g3</samp>, respectively.
-When <var>grp_pth</var> and <var>lvl_nbr</var> are both specified, the editing
-actions are taken in sequence so that, e.g., <code>-G g1/g2:2</code>
-changes the input paths <samp>/</samp> and <samp>/h1/h2/h3/h4</samp>
-to <samp>/g1/g2</samp> and <samp>/g1/g2/h3/h4</samp>, respectively.
-Likewise, <code>-G g1/g2:-2</code> changes the input paths <samp>/</samp> and
-<samp>/h1/h2/h3/h4</samp> to <samp>/g1/g2</samp> and <samp>/h1/h2/g1/g2</samp>,
-respectively.
-</p>
-<p>Combining <acronym>GPE</acronym> with subsetting (see <a href="#Subsetting-Files">Subsetting Files</a>)
-yields powerful control over the extracted (or excluded) variables and
-groups and their placement in the output file as shown by the following
-commands.
-All commands below may be assumed to end with ‘<samp>in.nc out.nc</samp>’.
-</p><div class="example">
-<pre class="verbatim"># Prepending paths without editing:
-ncks # /g?/v? -> /g?/v?
-ncks -v v1 # /g?/v1 -> /g?/v1
-ncks -g g1 # /g1/v? -> /g1/v?
-ncks -G o1 # /g?/v? -> /o1/g?/v?
-ncks -G o1 -g g1 # /g1/v? -> /o1/g1/v?
-ncks -g g1 -v v1 # /g1/v1 -> /g1/v1
-ncks -G o1 -v v1 # /g?/v1 -> /o1/g?/v1
-ncks -G o1 -g g1 -v v1 # /g1/v1 -> /o1/g1/v1
-ncks -G g1 -g / -v v1 # /v1 -> /g1/v1
-ncks -G g1/g2 -v v1 # /g?/v1 -> /g1/g2/g?/v1
-# Delete-mode: Delete from and Prepend to path head
-# Syntax: -G [ppn]:lvl_nbr = # of levels to delete
-ncks -G :1 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G :1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g1/v1
-ncks -G :2 -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
-ncks -G :2 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G g2:1 -g g1 -v v1 # /g1/v1 -> /g2/v1
-ncks -G g2:2 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
-ncks -G g2:1 -g / -v v1 # /v1 -> /g2/v1
-ncks -G g2:1 -v v1 # /v1 -> /g2/v1
-ncks -G g2:1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/g1/v1
-# Flatten-mode: Remove all input path components
-# Syntax: -G [apn]: colon without numerical argument
-ncks -G : -v v1 # /g?/v1 -> /v1
-ncks -G : -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G : -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
-ncks -G g2: -v v1 # /g?/v1 -> /g2/v1
-ncks -G g2: # /g?/v? -> /g2/v?
-ncks -G g2: -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
-# Truncate-mode: Truncate from and Append to path tail
-# Syntax: -G [apn]:-lvl_nbr = # of levels to truncate
-# NB: -G [apn]:-lvl_nbr is equivalent to -G [apn]@lvl_nbr
-ncks -G :-1 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G :-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/v1
-ncks -G :-2 -g g1/g2 -v v1 # /g1/g2/v1 -> /v1
-ncks -G :-2 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G g2:-1 -v v1 # /g?/v1 -> /g2/v1
-ncks -G g2:-1 -g g1 -v v1 # /g1/v1 -> /g2/v1
-ncks -G g1:-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/g1/v1
-</pre></div>
-
-<a name="mv"></a> <!-- http://nco.sf.net/nco.html#mv -->
-<a name="move"></a> <!-- http://nco.sf.net/nco.html#move --><hr>
-<a name="Moving-Groups"></a>
-<div class="header">
-<p>
-Next: <a href="#Dismembering-Files" accesskey="n" rel="next">Dismembering Files</a>, Previous: <a href="#Flattening-Groups" accesskey="p" rel="prev">Flattening Groups</a>, Up: <a href="#Group-Path-Editing" accesskey="u" rel="up">Group Path Editing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Moving-Groups-1"></a>
-<h4 class="subsection">3.13.2 Moving Groups</h4>
-<a name="index-move-groups"></a>
-<a name="index-groups_002c-moving"></a>
-<a name="index-rename-groups"></a>
-<a name="index-groups_002c-renaming"></a>
-<p>Until fall 2013 (netCDF version 4.3.1-pre1), netCDF contained no library
-function for renaming groups, and therefore <code>ncrename</code> cannot
-rename groups.
-However, <acronym>NCO</acronym> built on earlier versions of netCDF than 4.3.1
-can use a <acronym>GPE</acronym>-based workaround mechanism to “rename”
-groups.
-The <acronym>GPE</acronym> mechanism actually <em>moves</em> (i.e., copies to a new
-location) groups, a more arduous procedure than simply renaming them.
-<acronym>GPE</acronym> applies to all selected groups, so, in the general case,
-one must move only the desired group to a new file, and then merge that
-new file with the original to obtain a file where the desired group has
-been “renamed” and all else is unchanged.
-Here is how to “rename” group <samp>/g4</samp> to group <samp>/f4</samp> with
-<acronym>GPE</acronym> instead of <code>ncrename</code>
-</p><div class="example">
-<pre class="example">ncks -O -G f4:1 -g g4 ~/nco/data/in_grp.nc ~/tmp.nc # Move /g4 to /f4
-ncks -O -x -g g4 ~/nco/data/in_grp.nc ~/out.nc # Excise /g4
-ncks -A ~/tmp.nc ~/out.nc # Add /f4 to new file
-</pre></div>
-<p>If the original group <samp>g4</samp> is not excised from <samp>out.nc</samp> (step
-two above), then the final output file would contain both <samp>g4</samp> and
-a copy named <samp>f4</samp>.
-Thus GPE can be used to both “rename” and copy groups.
-The recommended way to rename groups when when netCDF version 4.3.1 is
-availale is to use <code>ncrename</code> (see <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>).
-</p>
-<a name="xmp_flt"></a> <!-- http://nco.sf.net/nco.html#xmp_flt --><p>One may wish to flatten hierarchical group files for many reasons.
-These include 1. Obtaining<!-- /@w --> flat netCDF3 files for use with tools
-that do not work with netCDF4 files, 2. Splitting<!-- /@w --> apart
-hierarchies to re-assemble into different hierarchies, and
-3. Providing<!-- /@w --> a subset of a hierarchical file with the simplest
-possible storage structure.
-</p><div class="example">
-<pre class="example">ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /cesm to /
-</pre></div>
-<p>The <samp>-3</samp> switch
-<a name="DOCF32" href="#FOOT32"><sup>32</sup></a>
-specifies the output dataset should be in netCDF3
-format, the <samp>-G :</samp> option flattens all extracted groups, and the
-<samp>-g cesm</samp> option extracts only the <code>cesm</code> group and leaves
-all other groups (e.g., <code>ecmwf</code>, <code>giss</code>).
-</p>
-<a name="dismember"></a> <!-- http://nco.sf.net/nco.html#dismember -->
-<a name="disaggregate"></a> <!-- http://nco.sf.net/nco.html#disaggregate -->
-<a name="ncdismember"></a> <!-- http://nco.sf.net/nco.html#ncdismember --><hr>
-<a name="Dismembering-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Checking-CF_002dcompliance" accesskey="n" rel="next">Checking CF-compliance</a>, Previous: <a href="#Moving-Groups" accesskey="p" rel="prev">Moving Groups</a>, Up: <a href="#Group-Path-Editing" accesskey="u" rel="up">Group Path Editing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Dismembering-Files-1"></a>
-<h4 class="subsection">3.13.3 Dismembering Files</h4>
-<a name="index-disaggregate"></a>
-<a name="index-dismember"></a>
-<a name="index-ncdismember"></a>
-<p>Let us show how to completely disaggregate (or, more memorably)
-<em>dismember</em> a hierarchical dataset.
-For now we take this to mean: store each group as a standalone flat
-dataset in netCDF3 format.
-This can be accomplished by looping the previous example over all
-groups.
-This script <samp>ncdismember</samp> dismembers the input file <var>fl_in</var>
-specified in the first argument and places the resulting files in the
-directory <var>drc_out</var> specified by the second argument:
-</p><div class="example">
-<pre class="verbatim">cat > ~/ncdismember << 'EOF'
-# Purpose: Dismember netCDF4/HDF5 hierarchical files. CF-check them.
-# Place each input file group in separate netCDF3 output file
-# Described in NCO User Guide at http://nco.sf.net/nco.html#dismember
-# Requirements: NCO 4.3.x+, UNIX shell utilities awk, grep, sed
-# Optional: CFchecker command https://bitbucket.org/mde_/cfchecker
-
-# Usage:
-# ncdismember <fl_in> <drc_out> [flg_cf] [cf_vrs] [opt]
-# where fl_in is input file/URL to dismember, drc_out is output directory,
-# CF-compliance check is performed when optional third argument is 'cf',
-# Optional fourth argument cf_vrs is CF version to check
-# Optional fifth argument opt passes straight through to ncks
-# chmod a+x ~/sh/ncdismember
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
-# ncdismember http://dust.ess.uci.edu/nco/mdl_1.nc /data/zender/nco/tmp
-# ncdismember http://thredds-test.ucar.edu/thredds/dodsC/testdods/foo.nc /data/zender/nco/tmp
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.3
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.5 --fix_rec_dmn=all
-
-# Command line argument defaults
-fl_in="${HOME}/nco/data/mdl_1.nc" # [sng] Input file to dismember/check
-drc_out="${DATA}/nco/tmp" # [sng] Output directory
-flg_cf='0' # [flg] Perform CF-compliance check
-cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
-opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
-# Use single quotes to pass multiple arguments to opt=${5}
-# Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
-
-# Command line argument option parsing
-if [ -n "${1}" ]; then fl_in=${1}; fi
-if [ -n "${2}" ]; then drc_out=${2}; fi
-if [ -n "${3}" ]; then flg_cf=${3}; fi
-if [ -n "${4}" ]; then cf_vrs=${4}; fi
-if [ -n "${5}" ]; then opt=${5}; fi
-
-# Prepare output directory
-echo "NCO dismembering file ${fl_in}"
-fl_stb=$(basename ${fl_in})
-drc_out=${drc_out}/${fl_stb}
-mkdir -p ${drc_out}
-cd ${drc_out}
-# Obtain group list
-grp_lst=`ncks --cdl -m ${fl_in} | grep '// group' | awk '{$1=$2=$3="";sub(/^ */,"",$0);print}'`
-IFS=$'\n' # Change Internal-Field-Separator from <Space><Tab><Newline> to <Newline>
-for grp_in in ${grp_lst} ; do
- # Replace slashes by dots for output group filenames
- grp_out=`echo ${grp_in} | sed 's/\///' | sed 's/\//./g'`
- if [ "${grp_out}" = '' ]; then grp_out='root' ; fi
- # Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
- hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
- # Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
- # Use eval in case ${opt} contains multiple arguments separated by whitespace
- eval ${cmd}
- if [ ${flg_cf} = 'cf' ]; then
- # cfchecker needs Conventions <= 1.5
- no_bck_sls=`echo ${drc_out}/${grp_out} | sed 's/\\\ / /g'`
- ncatted -h -a Conventions,global,o,c,CF-${cf_vrs} ${no_bck_sls}.nc
- else # !flg_cf
- echo ${drc_out}/${grp_out}.nc
- fi # !flg_cf
-done
-if [ ${flg_cf} = 'cf' ]; then
- echo "CFchecker reports CF-compliance of each group in flat netCDF3 format"
- cfchecker -c ${cf_vrs} *.nc
-fi # !flg_cf
-EOF
-chmod 755 ~/ncdismember # Make command executable
-/bin/mv -f ~/ncdismember ~/sh # Store in location on $PATH, e.g., /usr/local/bin
-
-zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp
-NCO dismembering file /home/zender/nco/data/mdl_1.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.cesm_01.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.cesm_02.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_01.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_02.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.nc
-/data/zender/nco/tmp/mdl_1.nc/root.nc
-</pre></div>
-<p>A (potentially more portable) binary executable could be written to
-dismember all groups with a single invocation, yet dismembering without
-loss of information is possible now with this simple script on all
-platforms with <acronym>UNIX</acronym>y utilities.
-Note that all dimensions inherited by groups in the input file are
-correctly placed by <code>ncdismember</code> into the flat files.
-Moreover, each output file preserves the group metadata of all ancestor
-groups, including the global metadata from the input file.
-As written, the script could fail on groups that contain advanced
-netCDF4 features because the user requests (with the ‘<samp>-3</samp>’ switch)
-that output be netCDF3 classic format.
-However, <code>ncks</code> detects many format incompatibilities in advance
-and works around them.
-For example, <code>ncks</code> autoconverts netCDF4-only atomic-types (such
-as <code>NC_STRING</code> and <code>NC_UBYTE</code>) to corresponding netCDF3
-atomic types (<code>NC_CHAR</code> and <code>NC_SHORT</code>) when the output format
-is netCDF3.
-</p>
-<hr>
-<a name="Checking-CF_002dcompliance"></a>
-<div class="header">
-<p>
-Previous: <a href="#Dismembering-Files" accesskey="p" rel="prev">Dismembering Files</a>, Up: <a href="#Group-Path-Editing" accesskey="u" rel="up">Group Path Editing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Checking-CF_002dcompliance-1"></a>
-<h4 class="subsection">3.13.4 Checking CF-compliance</h4>
-<a name="index-CF-compliance-checker"></a>
-<a name="index-cfchecker"></a>
-<a name="index-ncdismember-1"></a>
-<a name="index-compliance-checker"></a>
-<a name="index-Martin-Schultz"></a>
-<a name="index-Michael-Decker"></a>
-<p>One application of dismembering is to check the <acronym>CF</acronym>-compliance of each
-group in a file.
-When invoked with the optional third argumnt ‘<samp>cf</samp>’,
-<code>ncdismember</code> passes each file it generates to the freely
-available
-<a name="DOCF33" href="#FOOT33"><sup>33</sup></a>
-<code>cfchecker</code> command.
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
-NCO dismembering file /home/zender/nco/data/mdl_1.nc
-CFchecker reports CF-compliance of each group in flat netCDF3 format
-WARNING: Using the default (non-CF) Udunits database
-cesm.cesm_01.nc:
-INFO: INIT: running CFchecker version 1.5.15
-INFO: INIT: checking compliance with convention CF-1.5
-INFO: INIT: using standard name table version: 25, last modified: 2013-07-05T05:40:30Z
-INFO: INIT: using area type table version: 2, date: 10 July 2013
-INFO: 2.4: no axis information found in dimension variables, not checking dimension order
-WARNING: 3: variable "tas1" contains neither long_name nor standard_name attribute
-WARNING: 3: variable "tas2" contains neither long_name nor standard_name attribute
-INFO: 3.1: variable "tas1" does not contain units attribute
-INFO: 3.1: variable "tas2" does not contain units attribute
---------------------------------------------------
-cesm.cesm_02.nc:
-...
-</pre></div>
-<p>By default the <acronym>CF</acronym> version checked is determined automatically by
-<code>cfchecker</code>.
-The user can override this default by supplying a supported <acronym>CF</acronym> version,
-e.g., ‘<samp>1.3</samp>’, as an optional fourth argument to
-<code>ncdismember</code>.
-Current valid <acronym>CF</acronym> options are ‘<samp>1.0</samp>’, ‘<samp>1.1</samp>’,
-‘<samp>1.2</samp>’, ‘<samp>1.3</samp>’, ‘<samp>1.4</samp>’, and ‘<samp>1.5</samp>’.
-</p>
-<a name="diwg"></a> <!-- http://nco.sf.net/nco.html#diwg --><p>Our development and testing of <code>ncdismember</code> is funded by our
-involvement in <acronym>NASA</acronym>’s Dataset Interoperability Working Group
-(<a href="https://wiki.earthdata.nasa.gov/display/ESDSWG/Dataset+Interoperability+Working+Group">DIWG</a>), though our interest extends beyond <acronym>NASA</acronym> datasets.
-Taken together, <acronym>NCO</acronym>’s features (autoconversion to netCDF3
-atomic types, fixing multiple record dimensions, autosensing
-<acronym>HDF4</acronym> input, scoping rules for CF conventions) make
-<code>ncdismember</code> reliable and friendly for both dismembering
-hierarchical files and for <acronym>CF</acronym>-compliance checks.
-Most <acronym>HDF4</acronym> and <acronym>HDF5</acronym> datasets can be checked for
-<acronym>CF</acronym>-compliance with a one-line command.
-Example compliance checks of common <acronym>NASA</acronym> datasets are at
-<a href="http://dust.ess.uci.edu/diwg">http://dust.ess.uci.edu/diwg</a>.
-Our long-term goal is to enrich the hierarchical data model with the
-expressivity and syntactic power of <acronym>CF</acronym> conventions.
-</p>
-<a name="daac"></a> <!-- http://nco.sf.net/nco.html#daac --><p><acronym>NASA</acronym> asked the <acronym>DIWG</acronym> to prepare a one-page summary
-of the procedure necessary to check <acronym>HDF</acronym> files for
-<acronym>CF</acronym>-compliance:
-</p><div class="example">
-<pre class="verbatim">cat > ~/ncdismember.txt << 'EOF'
- Preparing an RPM-based OS to Test HDF & netCDF Files for CF-Compliance
-
-By Charlie Zender, UCI & NASA Dataset Interoperability Working Group (DIWG)
-
-Installation Summary:
-1. HDF4 [with internal netCDF support _disabled_]
-2. HDF5
-3. netCDF [with external HDF4 support _enabled_]
-4. NCO
-5. numpy
-6. netcdf4-python
-7. python-lxml
-8. CFunits-python
-9. CFChecker
-10. ncdismember
-
-All 10 packages can use default installs _except_ HDF4 and netCDF.
-Following instructions for Fedora Core 20 (FC20), an RPM-based Linux OS
-Feedback and changes for other Linux-based OS's welcome to zender at uci.edu
-${H4DIR}, ${H5DIR}, ${NETCDFDIR}, ${NCODIR}, may all be different
-For simplicity CZ sets them all to /usr/local
-
-# 1. HDF4. Build in non-default manner. Turn-off its own netCDF support.
-# Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
-# HDF4 support not necessary though it makes ncdismember more comprehensive
-wget -c http://www.hdfgroup.org/ftp/HDF/HDF_Current/src/hdf-4.2.9.tar.gz
-tar xvzf hdf-4.2.9.tar.gz
-cd hdf-4.2.9
-./configure --enable-shared --disable-netcdf --disable-fortran --prefix=${H4DIR}
-make && make check && make install
-
-# 2. HDF5. Build normally. RPM may work too. Please let me know if so.
-# HDF5 is a necessary pre-requisite for netCDF4
-wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.11.tar.gz
-tar xvzf hdf5-1.8.11.tar.gz
-cd hdf5-1.8.11
-./configure --enable-shared --prefix=${H5DIR}
-make && make check && make install
-
-# 3. netCDF version 4.3.1 or later. Build in non-default manner with HDF4.
-# Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
-# Earlier versions of netCDF may fail checking some HDF4 files
-wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.2.tar.gz
-tar xvzf netcdf-4.3.2.tar.gz
-cd netcdf-4.3.2
-CPPFLAGS="-I${H5DIR}/include -I${H4DIR}/include" \
-LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
-./configure --enable-hdf4 --enable-hdf4-file-tests
-make && make check && make install
-
-# 4. NCO version 4.4.0 or later. Some RPMs available. Or install by hand.
-# Later versions of NCO have much better support for ncdismember
-wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
-tar xvzf nco-4.4.4.tar.gz
-cd nco-4.4.4
-./configure --prefix=${NCODIR}
-make && make install
-
-# 5. numpy
-sudo yum install numpy -y
-
-# 6. netcdf4-python
-sudo yum install netcdf4-python -y
-
-# 7. python-lxml
-sudo yum install python-lxml -y
-
-# 8. CFunits-python. No RPM available. Must install by hand.
-# http://code.google.com/p/cfunits-python/
-wget http://cfunits-python.googlecode.com/files/cfunits-0.9.6.tar.gz .
-tar xvzf cfunits-0.9.6.tar.gz
-cd cfunits-0.9.6
-sudo python setup.py install
-
-# 9. CFChecker. No RPM available. Must install by hand.
-# https://bitbucket.org/mde_/cfchecker
-wget https://bitbucket.org/mde_/cfchecker/downloads/CFchecker-1.5.15.tar.bz2 .
-tar xvjf CFchecker-1.5.15.tar.bz2
-cd CFchecker
-sudo python setup.py install
-
-# 10. ncdismember. Copy script from http://nco.sf.net/nco.html#ncdismember
-# Store dismembered files somewhere, e.g., ${DATA}/nco/tmp/hdf
-mkdir -p ${DATA}/nco/tmp/hdf
-# Many datasets work with a simpler command...
-ncdismember ~/nco/data/in.nc ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/AMSR_E_L2_Rain_V10_200905312326_A.hdf \
- ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/HIRDLS-Aura_L3ZAD_v06-00-00-c02_2005d022-2008d077.he5 ${DATA}/nco/tmp/hdf cf 1.5
-# Some datasets, typically .h5, require the --fix_rec_dmn=all argument
-ncdismember_${DATA}/hdf/GATMO_npp_d20100906_t1935191_e1935505_b00012_c20110707155932065809_noaa_ops.h5 ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
-ncdismember ${DATA}/hdf/mabel_l2_20130927t201800_008_1.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
-EOF
-</pre></div>
-<p>A <acronym>PDF</acronym> version of these instructions is available
-<a href="http://dust.ess.uci.edu/diwg/ncdismember.pdf">here</a>.
-</p>
-<a name="ftn"></a> <!-- http://nco.sf.net/nco.html#ftn -->
-<a name="-F"></a> <!-- http://nco.sf.net/nco.html#-F --><hr>
-<a name="C-and-Fortran-Index-Conventions"></a>
-<div class="header">
-<p>
-Next: <a href="#Hyperslabs" accesskey="n" rel="next">Hyperslabs</a>, Previous: <a href="#Group-Path-Editing" accesskey="p" rel="prev">Group Path Editing</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="C-and-Fortran-Index-conventions"></a>
-<h3 class="section">3.14 C and Fortran Index conventions</h3>
-<a name="index-index-convention"></a>
-<a name="index-Fortran-index-convention"></a>
-<a name="index-C-index-convention"></a>
-<a name="index-_002dF"></a>
-<a name="index-_002d_002dfortran"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-F</samp>’<br>
-Long options: ‘<samp>--fortran</samp>’<br>
-</p></td></tr></table>
-<a name="index-I_002fO-1"></a>
-<p>The ‘<samp>-F</samp>’ switch changes <acronym>NCO</acronym> to read and write with
-the Fortran index convention.
-By default, <acronym>NCO</acronym> uses C-style (0-based) indices for all I/O.
-In C<!-- /@w -->, indices count from 0<!-- /@w --> (rather than 1<!-- /@w -->), and
-dimensions are ordered from slowest (inner-most) to fastest
-(outer-most) varying.
-In Fortran, indices count from 1<!-- /@w --> (rather than 0<!-- /@w -->), and
-dimensions are ordered from fastest (inner-most) to slowest
-(outer-most) varying.
-<a name="index-transpose"></a>
-Hence C and<!-- /@w --> Fortran data storage conventions represent mathematical
-transposes of eachother.
-<a name="index-record-variable"></a>
-Note that record variables contain the record dimension as the most
-slowly varying dimension.
-See <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a> for techniques
-to re-order (including transpose) dimensions and to reverse data
-storage order.
-</p>
-<a name="index-record-dimension-1"></a>
-<p>Consider a file <samp>85.nc</samp> containing 12 months<!-- /@w --> of data in the
-record dimension <code>time</code>.
-The following hyperslab operations produce identical results, a
-June-July-August average of the data:
-</p><div class="example">
-<pre class="example">ncra -d time,5,7 85.nc 85_JJA.nc
-ncra -F -d time,6,8 85.nc 85_JJA.nc
-</pre></div>
-
-<p>Printing variable <var>three_dmn_var</var> in file <samp>in.nc</samp> first with
-the C indexing<!-- /@w --> convention, then with Fortran indexing convention
-results in the following output formats:
-</p><div class="example">
-<pre class="example">% ncks -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=1000 lon[0]=-180 three_dmn_var[0]=0
-...
-% ncks -F -v three_dmn_var in.nc
-lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
-...
-</pre></div>
-
-<a name="-d"></a> <!-- http://nco.sf.net/nco.html#-d -->
-<a name="-0"></a> <!-- http://nco.sf.net/nco.html#-0 -->
-<a name="dmn"></a> <!-- http://nco.sf.net/nco.html#dmn -->
-<a name="hyp"></a> <!-- http://nco.sf.net/nco.html#hyp -->
-<a name="hyperslab"></a> <!-- http://nco.sf.net/nco.html#hyperslab --><hr>
-<a name="Hyperslabs"></a>
-<div class="header">
-<p>
-Next: <a href="#Stride" accesskey="n" rel="next">Stride</a>, Previous: <a href="#C-and-Fortran-Index-Conventions" accesskey="p" rel="prev">C and Fortran Index Conventions</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Hyperslabs-1"></a>
-<h3 class="section">3.15 Hyperslabs</h3>
-<a name="index-hyperslab"></a>
-<a name="index-dimension-limits"></a>
-<a name="index-coordinate-limits"></a>
-<a name="index-_002d0"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-Long options:
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’,<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-</p></td></tr></table>
-<p>A <em>hyperslab</em><!-- /@w --> is a subset of a variable’s data.
-The coordinates of a hyperslab are specified with the
-<code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code> short
-option (or with the same arguments to the ‘<samp>--dimension</samp>’ or
-‘<samp>--dmn</samp>’ long options).
-At least one hyperslab argument (<var>min</var>, <var>max</var>, or <var>stride</var>)
-must be present.
-The bounds of the hyperslab to be extracted are specified by the
-associated <var>min</var> and <var>max</var> values.
-A half<!-- /@w -->-open range is specified by omitting either the <var>min</var> or
-<var>max</var> parameter.
-The separating comma must be present to indicate the omission of one of
-these arguments.
-The unspecified limit is interpreted as the maximum or minimum value in
-the unspecified direction.
-A cross<!-- /@w -->-section at a specific coordinate is extracted by specifying only
-the <var>min</var> limit and omitting a trailing comma.
-Dimensions not mentioned are passed with no reduction in range.
-The dimensionality of variables is not reduced (in the case of a
-cross-section, the size of the constant dimension will be one).
-</p><div class="example">
-<pre class="example"># First and second longitudes
-ncks -F -d lon,1,2 in.nc out.nc
-# Second and third longitudes
-ncks -d lon,1,2 in.nc out.nc
-</pre></div>
-
-<p>As of version 4.2.1 (August, 2012), <acronym>NCO</acronym> allows one to extract
-the last <var>N</var> elements of a hyperslab.
-Negative integers as <var>min</var> or <var>max</var> elements of a hyperslab
-specification indicate offsets from the end (Python also uses this
-convention).
-Consistent with this convention, the value ‘<samp>-1</samp>’ (negative one)
-indicates the last element of a dimension, and negative zero is
-algebraically equivalent to zero and so indicates the first element of a
-dimension.
-Previously, for example, ‘<samp>-d time,-2,-1</samp>’ caused a domain error.
-Now it means select the penultimate and last timesteps, independent of
-the size of the <code>time</code> dimension.
-Select only the first and last timesteps, respectively, with
-‘<samp>-d time,0</samp>’ and ‘<samp>-d time,-1</samp>’.
-Negative integers work for <var>min</var> and <var>max</var> indices, though not
-for <var>stride</var>.
-</p><div class="example">
-<pre class="example"># Second through penultimate longitudes
-ncks -d lon,1,-2 in.nc out.nc
-# Second through last longitude
-ncks -d lon,1,-1 in.nc out.nc
-# Second-to-last to last longitude
-ncks -d lon,-3,-1 in.nc out.nc
-# Second-to-last to last longitude
-ncks -d lon,-3, in.nc out.nc
-</pre></div>
-<p>The ‘<samp>-F</samp>’ argument, if any, applies the Fortran index convention
-only to indices specified as positive integers:
-</p><div class="example">
-<pre class="example"># First through penultimate longitudes
-ncks -F -d lon,1,-2 in.nc out.nc (-F affects only start index)
-# First through last longitude
-ncks -F -d lon,1,-1 in.nc out.nc
-# Second-to-last to penultimate longitude (-F has no effect)
-ncks -F -d lon,-3,-1 in.nc out.nc
-# Second-to-last to last longitude (-F has no effect)
-ncks -F -d lon,-3, in.nc out.nc
-</pre></div>
-
-<a name="index-stride"></a>
-<p>Coordinate values should be specified using real notation with a decimal
-point required in the value, whereas dimension indices are specified
-using integer notation without a decimal point.
-This convention serves only to differentiate coordinate values from
-dimension indices.
-It is independent of the type of any netCDF coordinate variables.
-For a given dimension, the specified limits must both be coordinate
-values (with decimal points) or dimension indices (no decimal points).
-</p>
-<p>If values of a coordinate-variable are used to specify a range or
-cross-section, then the coordinate variable must be monotonic (values
-either increasing or decreasing).
-In this case, command-line values need not exactly match coordinate
-values for the specified dimension.
-Ranges are determined by seeking the first coordinate value to occur in
-the closed range [<var>min</var>,<var>max</var>] and including all subsequent
-values until one falls outside the range.
-The coordinate value for a cross-section is the coordinate-variable
-value closest to the specified value and must lie within the range or
-coordinate-variable values.
-The <var>stride</var> argument, if any, must be a dimension index, not a
-coordinate value.
-See <a href="#Stride">Stride</a>, for more information on the <var>stride</var> option.
-</p><div class="example">
-<pre class="example"># All longitude values between 1 and 2 degrees
-ncks -d lon,1.0,2.0 in.nc out.nc
-# All longitude values between 1 and 2 degrees
-ncks -F -d lon,1.0,2.0 in.nc out.nc
-# Every other longitude value between 0 and 90 degrees
-ncks -F -d lon,0.0,90.0,2 in.nc out.nc
-</pre></div>
-<p>As shown, we recommend using a full floating point suffix of <code>.0</code>
-instead of simply <code>.</code> in order to make obvious the selection of
-hyperslab elements based on coordinate value rather than index.
-</p>
-<a name="index-NC_005fCHAR"></a>
-<p>User-specified coordinate limits are promoted to double-precision values
-while searching for the indices which bracket the range.
-Thus, hyperslabs on coordinates of type <code>NC_CHAR</code> are computed
-numerically rather than lexically, so the results are unpredictable.
-</p>
-<a name="index-wrapped-coordinates"></a>
-<p>The relative magnitude of <var>min</var> and <var>max</var> indicate to the
-operator whether to expect a <em>wrapped coordinate</em>
-(see <a href="#Wrapped-Coordinates">Wrapped Coordinates</a>), such as longitude.
-If <em><var>min</var> > <var>max</var></em>, the <acronym>NCO</acronym> expects the
-coordinate to be wrapped, and a warning message will be printed.
-When this occurs, <acronym>NCO</acronym> selects all values outside the domain
-[<em><var>max</var> < <var>min</var></em>], i.e., all the values exclusive of the
-values which would have been selected if <var>min</var> and <var>max</var> were
-swapped.
-If this seems confusing, test your command on just the coordinate
-variables with <code>ncks</code>, and then examine the output to ensure
-<acronym>NCO</acronym> selected the hyperslab you expected (coordinate wrapping
-is currently only supported by <code>ncks</code>).
-</p>
-<p>Because of the way wrapped coordinates are interpreted, it is very
-important to make sure you always specify hyperslabs in the
-monotonically increasing sense, i.e., <em><var>min</var> < <var>max</var></em>
-(even if the underlying coordinate variable is monotonically
-decreasing).
-The only exception to this is when you are indeed specifying a wrapped
-coordinate.
-The distinction is crucial to understand because the points selected by,
-e.g., <code>-d longitude,50.,340.</code>, are exactly the complement of the
-points selected by <code>-d longitude,340.,50.</code>.
-</p>
-<p>Not specifying any hyperslab option is equivalent to specifying full
-ranges of all dimensions.
-This option may be specified more than once in a single command
-(each hyperslabbed dimension requires its own <code>-d</code> option).
-</p>
-<a name="srd"></a> <!-- http://nco.sf.net/nco.html#srd -->
-<a name="stride"></a> <!-- http://nco.sf.net/nco.html#stride --><hr>
-<a name="Stride"></a>
-<div class="header">
-<p>
-Next: <a href="#Record-Appending" accesskey="n" rel="next">Record Appending</a>, Previous: <a href="#Hyperslabs" accesskey="p" rel="prev">Hyperslabs</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Stride-1"></a>
-<h3 class="section">3.16 Stride</h3>
-<a name="index-stride-1"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-Long options:
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’,<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-</p></td></tr></table>
-<p>All data operators support specifying a <em>stride</em> for any and all
-dimensions at the same time.
-The <var>stride</var> is the spacing between consecutive points in a
-hyperslab.
-A <var>stride</var><!-- /@w --> of 1<!-- /@w --> picks all the elements of the hyperslab, and
-a <var>stride</var> of 2<!-- /@w --> skips every other element, etc..
-<code>ncks</code> multislabs support strides, and are more powerful than
-the regular hyperslabs supported by the other operators
-(see <a href="#Multislabs">Multislabs</a>).
-Using the <var>stride</var> option for the record dimension with
-<code>ncra</code> and <code>ncrcat</code> makes it possible, for instance, to
-average or concatenate regular intervals across multi-file input data sets.
-</p>
-<p>The <var>stride</var> is specified as the optional fourth argument to the
-‘<samp>-d</samp>’ hyperslab specification:
-<code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code>.
-Specify <var>stride</var> as an integer (i.e., no decimal point) following
-the third comma in the ‘<samp>-d</samp>’ argument.
-There is no default value for <var>stride</var>.
-Thus using ‘<samp>-d time,,,2</samp>’ is valid but ‘<samp>-d time,,,2.0</samp>’ and
-‘<samp>-d time,,,</samp>’ are not.
-When <var>stride</var> is specified but <var>min</var> is not, there is an
-ambiguity as to whether the extracted hyperslab should begin with (using
-C-style, 0-based indexes) element 0<!-- /@w --> or element ‘<samp>stride-1</samp>’.
-<acronym>NCO</acronym> must resolve this ambiguity and it chooses element 0<!-- /@w -->
-as the first element of the hyperslab when <var>min</var> is not specified.
-Thus ‘<samp>-d time,,,<var>stride</var></samp>’ is syntactically equivalent to
-‘<samp>-d time,0,,<var>stride</var></samp>’.
-This means, for example, that specifying the operation
-‘<samp>-d time,,,2</samp>’ on the array ‘<samp>1,2,3,4,5</samp>’ selects the hyperslab
-‘<samp>1,3,5</samp>’.
-To obtain the hyperslab ‘<samp>2,4</samp>’ instead, simply explicitly specify
-the starting index as 1,<!-- /@w --> i.e., ‘<samp>-d time,1,,2</samp>’.
-</p>
-<p>For example, consider a file <samp>8501_8912.nc</samp> which contains 60
-consecutive months of data.
-Say you wish to obtain just the March data from this file.
-Using 0-based subscripts (see <a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a>) these
-data are stored in records 2, 14, … 50<!-- /@w --> so the desired
-<var>stride</var> is 12.<!-- /@w -->
-Without the <var>stride</var> option, the procedure is very awkward.
-One could use <code>ncks</code> five times and then use <code>ncrcat</code> to
-concatenate the resulting files together:
-<a name="index-Bourne-Shell"></a>
-<a name="index-C-Shell"></a>
-</p><div class="example">
-<pre class="verbatim">for idx in 02 14 26 38 50; do # Bourne Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
-done
-foreach idx (02 14 26 38 50) # C Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
-end
-ncrcat foo.?? 8589_03.nc
-rm foo.??
-</pre></div>
-<p>With the <var>stride</var> option, <code>ncks</code> performs this hyperslab
-extraction in one operation:
-</p><div class="example">
-<pre class="example">ncks -d time,2,,12 8501_8912.nc 8589_03.nc
-</pre></div>
-<p>See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>, for more information on <code>ncks</code>.
-</p>
-<p>Applying the <var>stride</var> option to the record dimension in
-<code>ncra</code> and <code>ncrcat</code> makes it possible, for instance, to
-average or concatenate regular intervals across multi-file input data
-sets.
-</p><div class="example">
-<pre class="example">ncra -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8589_03.nc
-ncrcat -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8503_8903.nc
-</pre></div>
-
-<a name="rec_apn"></a> <!-- http://nco.sf.net/nco.html#rec_apn -->
-<a name="record_append"></a> <!-- http://nco.sf.net/nco.html#record_append --><hr>
-<a name="Record-Appending"></a>
-<div class="header">
-<p>
-Next: <a href="#Subcycle" accesskey="n" rel="next">Subcycle</a>, Previous: <a href="#Stride" accesskey="p" rel="prev">Stride</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Record-Appending-1"></a>
-<h3 class="section">3.17 Record Appending</h3>
-<a name="index-record-append"></a>
-<a name="index-_002d_002drec_005fapn"></a>
-<a name="index-_002d_002drecord_005fappend"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncra</code>, <code>ncrcat</code><br>
-Short options: None<br>
-Long options:
-‘<samp>--rec_apn</samp>’, ‘<samp>--record_append</samp>’<br>
-</p></td></tr></table>
-<p>As of version 4.2.6 (March, 2013), <acronym>NCO</acronym> allows both
-Multi-File, Multi-Record operators (<code>ncra</code> and <code>ncrcat</code>)
-to append their output directly to the end of an existing file.
-This feature may be used to augment a target file, rather than construct
-it from scratch.
-This helps, for example, when a timeseries is concatenated from input
-data that becomes available in stages rather than all at once.
-In such cases this switch significantly speeds writing.
-</p>
-<p>Consider the use case where one wishes to preserve the contents of
-<samp>fl_1.nc</samp>, and add to them new records contained in
-<samp>fl_2.nc</samp>.
-Previously the output had to be placed in a third file, <samp>fl_3.nc</samp>
-(which could also safely be named <samp>fl_2.nc</samp>), via
-</p><div class="example">
-<pre class="example">ncrcat -O fl_1.nc fl_2.nc fl_3.nc
-</pre></div>
-<p>Under the hood this operation copies all information in
-<samp>fl_1.nc</samp> and <samp>fl_2.nc</samp> not once but twice.
-The first copy is performed through the netCDF interface, as all
-data from <samp>fl_1.nc</samp> and <samp>fl_2.nc</samp> are extracted and placed in
-the output file.
-The second copy occurs (usually much) more quickly as the (by default)
-temporary output file is copied (sometimes a quick re-link suffices) to
-the final output file (see <a href="#Temporary-Output-Files">Temporary Output Files</a>).
-All this copying is expensive for large files.
-</p>
-<p>The ‘<samp>--record_append</samp>’ switch appends all records in <samp>fl_2.nc</samp>
-to the end (after the last record) of <samp>fl_1.nc</samp>:
-</p><div class="example">
-<pre class="example">ncrcat --rec_apn fl_2.nc fl_1.nc
-</pre></div>
-<p>The ordering of the filename arguments may seem non-intuitive.
-If the record variable represents time in these files, then the
-values in <samp>fl_1.nc</samp> precede those in <samp>fl_2.nc</samp>, so why
-do the files appear in the reverse order on the command line?
-<samp>fl_1.nc</samp> is the last file named because it is the pre-existing
-output file to which we will append all the other input files listed
-(in this case only <samp>fl_2.nc</samp>).
-The contents of <samp>fl_1.nc</samp> are completely preserved, and only
-values in <samp>fl_2.nc</samp> (and any other input files) are copied.
-This switch avoids the necessity of copying all of <samp>fl_1.nc</samp>
-through the netCDF interface to a new output file.
-The ‘<samp>--rec_apn</samp>’ switch automatically puts <acronym>NCO</acronym> into
-append mode (see <a href="#Appending-Variables">Appending Variables</a>), so specifying ‘<samp>-A</samp>’ is
-redundant, and simultaneously specifying overwrite mode with ‘<samp>-O</samp>’
-causes an error.
-By default, NCO works in an intermediate temporary file.
-Power users may combine ‘<samp>--rec_apn</samp>’ with the ‘<samp>--no_tmp_fl</samp>’
-switch (see <a href="#Temporary-Output-Files">Temporary Output Files</a>):
-</p><div class="example">
-<pre class="example">ncrcat --rec_apn --no_tmp_fl fl_2.nc fl_1.nc
-</pre></div>
-<p>This avoids creating an intermediate file, and copies only the
-minimal amount of data (i.e., all of <samp>fl_2.nc</samp>).
-Hence, it is fast.
-We recommend users try to understand the safety trade-offs involved.
-</p>
-<a name="subcycle"></a> <!-- http://nco.sf.net/nco.html#subcycle -->
-<a name="ssc"></a> <!-- http://nco.sf.net/nco.html#ssc -->
-<a name="duration"></a> <!-- http://nco.sf.net/nco.html#duration -->
-<a name="drn"></a> <!-- http://nco.sf.net/nco.html#drn -->
-<a name="mro"></a> <!-- http://nco.sf.net/nco.html#mro --><hr>
-<a name="Subcycle"></a>
-<div class="header">
-<p>
-Next: <a href="#Multislabs" accesskey="n" rel="next">Multislabs</a>, Previous: <a href="#Record-Appending" accesskey="p" rel="prev">Record Appending</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Subcycle-1"></a>
-<h3 class="section">3.18 Subcycle</h3>
-<a name="index-duration"></a>
-<a name="index-sub_002dcycle"></a>
-<a name="index-subcycle"></a>
-<a name="index-MRO"></a>
-<a name="index-Multi_002dRecord-Operator"></a>
-<a name="index-_002d_002dmro"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002c_005bsubcycle_005d"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002c_005bsubcycle_005d"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002csubcycle_005d"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncra</code>, <code>ncrcat</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>’<br>
-Long options:
-‘<samp>--mro</samp>’
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>’<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>’<br>
-</p></td></tr></table>
-<p>As of version 4.2.1 (August, 2012), <acronym>NCO</acronym> allows both Multi-File,
-Multi-Record operators, <code>ncra</code> and <code>ncrcat</code>, to extract
-and operate on multiple groups of records.
-These groups may be connected to physical <em>sub-cycles</em> of a
-periodic nature, e.g., months of a year, or hours of a day.
-Or they may be thought of as groups of a specifed duration.
-The feature and the terminology to describe it are new.
-For now, we call this the <em>subcycle feature</em>, sometimes abbreviated
-<acronym>SSC</acronym>
-<a name="DOCF34" href="#FOOT34"><sup>34</sup></a>.
-</p>
-<p>The subcycle feature allows processing of groups of records
-separated by regular intervals of records.
-It is perhaps best illustrated by an extended example which describes
-how to solve the same problem both with and without the <acronym>SSC</acronym> feature.
-</p>
-<p>The first task in climate data processing is often creating seasonal
-cycles.
-Suppose a 150-year climate simulation produces 150 output files, each
-comprising 12 records, each record a monthly mean:
-<samp>1850.nc</samp>, <samp>1851.nc</samp>, ... <samp>1999.nc</samp>.
-Our goal is to create a single file containing the summertime (June,
-July, and August, aka JJA) mean.
-Traditionally, we would first compute the climatological monthly
-mean for each month of summer.
-Each of these is a 150-year mean, i.e.,
-</p><div class="example">
-<pre class="verbatim"># Step 1: Create climatological monthly files clm06.nc..clm08.nc
-for mth in {6..8}; do
- mm=`printf "%02d" $mth`
- ncra -O -F -d time,${mm},,12 -n 150,4,1 1850.nc clm${mm}.nc
-done
-# Step 2: Average climatological monthly files into summertime mean
-ncra -O clm06 clm07.nc clm08.nc clm_JJA.nc
-</pre></div>
-<p>So far, nothing is unusual and this task can be performed by any
-<acronym>NCO</acronym> version.
-The <acronym>SSC</acronym> feature makes obsolete the need for the shell loop
-used in Step 1<!-- /@w --> above.
-</p>
-<p>The new <acronym>SSC</acronym> option aggregates more than one input record at a time
-before performing arithmetic operations, and, with an additional
-switch, allows us to archive those results in multiple record output
-(MRO) files.
-This reduces the task of producing the climatological summertime
-mean to one step:
-</p><div class="example">
-<pre class="example"># Step 1: Compute climatological summertime mean
-ncra -O -F -d time,6,,12,3 -n 150,4,1 1850.nc clm_JJA.nc
-</pre></div>
-<p>The <acronym>SSC</acronym> option instructs <code>ncra</code> (or <code>ncrcat</code>)
-to process files in groups of three records.
-To better understand the meaning of each argument to the ‘<samp>-d</samp>’
-hyperslab option, read it this way: “for the time dimension start with
-the sixth record, continue without end, repeat the process every twelfth
-record, and define a sub-cycle as three consecutive records”.
-</p>
-<p>A separate option, ‘<samp>--mro</samp>’, instructs <code>ncra</code> to output
-its results from each sub-group, and to produce a <em>Multi-Record Output</em>
-(MRO) file rather than a <em>Single-Record Output</em> (SRO) file.
-Unless ‘<samp>--mro</samp>’ is specified, <code>ncra</code> collects together all
-the sub-groups, operates on their ensemble, and produces a single
-output record.
-The addition of ‘<samp>--mro</samp>’ to the above example causes <code>ncra</code>
-to archive all (150) annual summertime means to one file:
-</p><div class="example">
-<pre class="example"># Step 1: Archive all 150 summertime means in one file
-ncra --mro -O -F -d time,6,,12,3 -n 150,4,1 1850.nc 1850_2009_JJA.nc
-# ...or all (150) annual means...
-ncra --mro -O -d time,,,12,12 -n 150,4,1 1850.nc 1850_2009.nc
-</pre></div>
-<p>These operations generate and require no intermediate files.
-This contrasts to previous <acronym>NCO</acronym> methods, which require
-generating, averaging, then catenating 150 files.
-The ‘<samp>--mro</samp>’ option has no effect on, or rather is redundant for,
-<code>ncrcat</code> since <code>ncrcat</code> always outputs all selected
-records.
-</p>
-<a name="msa"></a> <!-- http://nco.sf.net/nco.html#msa -->
-<a name="mlt"></a> <!-- http://nco.sf.net/nco.html#mlt --><hr>
-<a name="Multislabs"></a>
-<div class="header">
-<p>
-Next: <a href="#Wrapped-Coordinates" accesskey="n" rel="next">Wrapped Coordinates</a>, Previous: <a href="#Subcycle" accesskey="p" rel="prev">Subcycle</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Multislabs-1"></a>
-<h3 class="section">3.19 Multislabs</h3>
-<a name="index-multislab"></a>
-<a name="index-multi_002dhyperslab"></a>
-<a name="index-MSA"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"></a>
-<a name="index-_002d_002dmsa"></a>
-<a name="index-_002d_002dmsa_005fusr_005frdr"></a>
-<a name="index-_002d_002dmsa_005fuser_005forder"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-Long options:
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’,<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-‘<samp>--msa_usr_rdr</samp>’, ‘<samp>--msa_user_order</samp>’<br>
-</p></td></tr></table>
-<p>A multislab<!-- /@w --> is a union of one or more hyperslabs.
-One defines multislabs by chaining together hyperslab commands, i.e.,
-<kbd>-d</kbd> options (see <a href="#Hyperslabs">Hyperslabs</a>).
-Support for specifying a <em>multi-hyperslab</em> or <em>multislab</em> for
-any variable was first added to <code>ncks</code> in late 2002.
-The other operators received these capabilities in April 2008.
-Multi-slabbing is often referred to by the acronym <acronym>MSA</acronym>,
-which stands for “Multi-Slabbing Algorithm”.
-As explained below, the user may additionally request that the
-multislabs be returned in the user-specified order, rather than the
-on-disk storage order.
-Although <acronym>MSA</acronym> user-ordering has been available in all operators
-since 2008, most users were unaware of it since the documentation
-(below, and in the man pages) was not written until July 2013.
-</p>
-<p>Multislabs overcome many restraints that limit simple hyperslabs.
-A single<!-- /@w --> <kbd>-d</kbd> option can only specify a contiguous and/or
-a regularly spaced multi-dimensional data array.
-Multislabs are constructed from multiple <kbd>-d</kbd> options and may
-therefore have non-regularly spaced arrays.
-For example, suppose it is desired to operate on all longitudes
-from 10.0 to 20.0 and from 80.0 to 90.0 degrees<!-- /@w -->.
-The combined range of longitudes is not selectable in a single
-hyperslab specfication of the form
-‘<samp>-d <var>dimension</var>,<var>min</var>,<var>max</var></samp>’ or
-‘<samp>-d <var>dimension</var>,<var>min</var>,<var>max</var>,<var>stride</var></samp>’ because its
-elements are irregularly spaced in coordinate space (and presumably
-in index space too).
-The multislab specification for obtaining these values is simply
-the union of the hyperslabs specifications that comprise the multislab,
-i.e.,
-</p><div class="example">
-<pre class="example">ncks -d lon,10.,20. -d lon,80.,90. in.nc out.nc
-ncks -d lon,10.,15. -d lon,15.,20. -d lon,80.,90. in.nc out.nc
-</pre></div>
-<p>Any number of hyperslabs specifications may be chained together
-to specify the multislab.
-<acronym>MSA</acronym> creates an output dimension equal in size to the sum of
-the sizes of the multislabs.
-This can be used to extend and or pad coordinate grids.
-</p>
-<a name="index-stride-2"></a>
-<p>Users may specify redundant ranges of indices in a multislab, e.g.,
-</p><div class="example">
-<pre class="example">ncks -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-</pre></div>
-<p>This command retrieves the first five longitudes, and then every other
-longitude value up to the tenth.
-Elements 0, 2, and 4<!-- /@w --> are specified by both hyperslab arguments (hence
-this is redundant) but will count only once if an arithmetic operation
-is being performed.
-This example uses index-based (not coordinate-based) multislabs because
-the <var>stride</var> option only supports index-based hyper-slabbing.
-See <a href="#Stride">Stride</a>, for more information on the <var>stride</var> option.
-</p>
-<p>Multislabs are more efficient than the alternative of sequentially
-performing hyperslab operations and concatenating the results.
-<a name="index-I_002fO-2"></a>
-This is because <acronym>NCO</acronym> employs a novel multislab algorithm to
-minimize the number of I/O operations when retrieving irregularly spaced
-data from disk.
-The <acronym>NCO</acronym> multislab algorithm retrieves each element from disk
-once and only once.
-Thus users may take some shortcuts in specifying multislabs and the
-algorithm will obtain the intended values.
-Specifying redundant ranges is not encouraged, but may be useful on
-occasion and will not result in unintended consequences.
-</p>
-<p>Suppose the <var>Q</var> variable contains three dimensional arrays of
-distinct chemical constituents in no particular order.
-We are interested in the NOy species in a certain geographic range.
-Say that NO, NO2, and N2O5 are elements 0<!-- /@w -->, 1, and 5<!-- /@w --> of the
-<var>species</var> dimension of <var>Q</var>.
-The multislab specification might look something like
-</p><div class="example">
-<pre class="example">ncks -d species,0,1 -d species,5 -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-</pre></div>
-<p>Multislabs are powerful because they may be specified for every
-dimension at the same time.
-Thus multislabs obsolete the need to execute multiple <code>ncks</code>
-commands to gather the desired range of data.
-</p>
-<a name="msa_usr_rdr"></a> <!-- http://nco.sf.net/nco.html#msa_usr_rdr --><p>The <acronym>MSA</acronym> user-order switch ‘<samp>--msa_usr_rdr</samp>’ (or
-‘<samp>--msa_user_order</samp>’, both of which shorten to ‘<samp>--msa</samp>’)
-requests that the multislabs be output in the user-specified
-order from the command-line, rather than in the input-file on-disk
-storage order.
-This allows the user to perform complex data re-ordering in one
-operation that would otherwise require cumbersome steps of
-hyperslabbing, concatenating, and permuting.
-Consider the recent example of a user who needed to convert datasets
-stored with the longitude coordinate <code>Lon</code> ranging from
-[-180,180) to datasets that follow the [0,360) convention.
-</p><div class="example">
-<pre class="example">% ncks -H -v Lon in.nc
-Lon[0]=-180
-Lon[1]=-90
-Lon[2]=0
-Lon[3]=90
-</pre></div>
-<p>Although simple in theory, this task requires both mathematics to
-change the numerical value of the longitude coordinate, data
-hyperslabbing to split the input on-disk arrays at Greenwich, and data
-re-ordering within to stitch the western hemisphere onto the eastern
-hemisphere at the date-line.
-The ‘<samp>--msa</samp>’ user-order switch overrides the default that data are
-output in the same order in which they are stored on-disk in the input
-file, and instead stores them in the same order as the multi-slabs are
-given to the command line.
-This default is intuitive and is not important in most uses.
-However, the <acronym>MSA</acronym> user-order switch allows users to meet
-their output order needs by specifying multi-slabs in a certain order.
-Compare the results of default ordering to user-ordering for longitude:
-</p><div class="example">
-<pre class="example">% ncks -O -H -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
-Lon[0]=-180
-Lon[1]=-90
-Lon[2]=0
-Lon[3]=90
-% ncks -O -H --msa -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
-Lon[0]=0
-Lon[1]=90
-Lon[2]=-180
-Lon[3]=-90
-</pre></div>
-<p>The two multi-slabs are the same but they can be presented to screen,
-or to an output file, in either order.
-The second example shows how to place the western hemisphere after the
-eastern hemisphere, although they are stored in the opposite order in
-the input file.
-</p>
-<p>With this background, one sees that the following commands suffice to
-rotate the input file by 180 degrees longitude:
-</p><div class="example">
-<pre class="example">% ncks -O -v LatLon --msa -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc out.nc
-% ncap2 -O -s 'where(Lon < 0) Lon=Lon+360' out.nc out.nc
-% ncks -C -H -v LatLon ~/nco/data/in.nc
-Lat[0]=-45 Lon[0]=-180 LatLon[0]=0
-Lat[0]=-45 Lon[1]=-90 LatLon[1]=1
-Lat[0]=-45 Lon[2]=0 LatLon[2]=2
-Lat[0]=-45 Lon[3]=90 LatLon[3]=3
-Lat[1]=45 Lon[0]=-180 LatLon[4]=4
-Lat[1]=45 Lon[1]=-90 LatLon[5]=5
-Lat[1]=45 Lon[2]=0 LatLon[6]=6
-Lat[1]=45 Lon[3]=90 LatLon[7]=7
-% ncks -C -H -v LatLon ~/out.nc
-Lat[0]=-45 Lon[0]=0 LatLon[0]=2
-Lat[0]=-45 Lon[1]=90 LatLon[1]=3
-Lat[0]=-45 Lon[2]=180 LatLon[2]=0
-Lat[0]=-45 Lon[3]=270 LatLon[3]=1
-Lat[1]=45 Lon[0]=0 LatLon[4]=6
-Lat[1]=45 Lon[1]=90 LatLon[5]=7
-Lat[1]=45 Lon[2]=180 LatLon[6]=4
-Lat[1]=45 Lon[3]=270 LatLon[7]=5
-</pre></div>
-<p>There are other workable, valid methods to accomplish this rotation, yet
-none are simpler nor more efficient than utilizing <acronym>MSA</acronym>
-user-ordering.
-Some final comments on applying this algorithm:
-Be careful to specify hemispheres that do not overlap, e.g., by
-inadvertently specifying coordinate ranges that both include Greenwich.
-Some users will find using index-based rather than coordinate-based
-hyperslabs makes this clearer.
-</p>
-<a name="wrp"></a> <!-- http://nco.sf.net/nco.html#wrp --><hr>
-<a name="Wrapped-Coordinates"></a>
-<div class="header">
-<p>
-Next: <a href="#Auxiliary-Coordinates" accesskey="n" rel="next">Auxiliary Coordinates</a>, Previous: <a href="#Multislabs" accesskey="p" rel="prev">Multislabs</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Wrapped-Coordinates-1"></a>
-<h3 class="section">3.20 Wrapped Coordinates</h3>
-<a name="index-wrapped-coordinates-1"></a>
-<a name="index-longitude"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncks</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-Long options:
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’,<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-</p></td></tr></table>
-<p>A <em>wrapped coordinate</em><!-- /@w --> is a coordinate whose values increase or
-decrease monotonically (nothing unusual so far), but which represents a
-dimension that ends where it begins (i.e., wraps around on itself).
-Longitude (i.e., degrees on a circle) is a familiar example of a wrapped
-coordinate.
-Longitude increases to the East of Greenwich, England, where it is
-defined to be zero.
-Halfway around the globe, the longitude is 180 degrees<!-- /@w --> East (or West).
-Continuing eastward, longitude increases to 360 degrees<!-- /@w --> East at
-Greenwich.
-The longitude values of most geophysical data are either in the range
-[0,360), or [-180,180).
-In either case, the Westernmost and Easternmost longitudes are
-numerically separated by 360 degrees<!-- /@w -->, but represent contiguous
-regions on the globe.
-For example, the Saharan desert stretches from roughly 340 to
-50 degrees<!-- /@w --> East.
-Extracting the hyperslab of data representing the Sahara from a global
-dataset presents special problems when the global dataset is stored
-consecutively in longitude from 0 to 360 degrees<!-- /@w -->.
-This is because the data for the Sahara will not be contiguous in the
-<var>input-file</var> but is expected by the user to be contiguous in the
-<var>output-file</var>.
-In this case, <code>ncks</code> must invoke special software routines to
-assemble the desired output hyperslab from multiple reads of the
-<var>input-file</var>.
-</p>
-<p>Assume the domain of the monotonically increasing longitude coordinate
-<code>lon</code> is <em>0 < <var>lon</var> < 360</em>.
-<code>ncks</code> will extract a hyperslab which crosses the Greenwich
-meridian simply by specifying the westernmost longitude as <var>min</var> and
-the easternmost longitude as <var>max</var>.
-The following commands extract a hyperslab containing the Saharan desert:
-</p><div class="example">
-<pre class="example">ncks -d lon,340.,50. in.nc out.nc
-ncks -d lon,340.,50. -d lat,10.,35. in.nc out.nc
-</pre></div>
-<p>The first example selects data in the same longitude range as the Sahara.
-The second example further constrains the data to having the same
-latitude as the Sahara.
-The coordinate <code>lon</code> in the <var>output-file</var>, <samp>out.nc</samp>, will
-no longer be monotonic!
-The values of <code>lon</code> will be, e.g., ‘<samp>340, 350, 0, 10, 20, 30,
-40, 50</samp>’.
-This can have serious implications should you run <samp>out.nc</samp> through
-another operation which expects the <code>lon</code> coordinate to be
-monotonically increasing.
-Fortunately, the chances of this happening are slim, since <code>lon</code>
-has already been hyperslabbed, there should be no reason to hyperslab
-<code>lon</code> again.
-Should you need to hyperslab <code>lon</code> again, be sure to give
-dimensional indices as the hyperslab arguments, rather than coordinate
-values (see <a href="#Hyperslabs">Hyperslabs</a>).
-</p>
-<a name="aux"></a> <!-- http://nco.sf.net/nco.html#aux -->
-<a name="auxiliary"></a> <!-- http://nco.sf.net/nco.html#auxiliary -->
-<a name="-X"></a> <!-- http://nco.sf.net/nco.html#-X -->
-<a name="std_nm"></a> <!-- http://nco.sf.net/nco.html#std_nm -->
-<a name="standard_name"></a> <!-- http://nco.sf.net/nco.html#standard_name --><hr>
-<a name="Auxiliary-Coordinates"></a>
-<div class="header">
-<p>
-Next: <a href="#UDUnits-Support" accesskey="n" rel="next">UDUnits Support</a>, Previous: <a href="#Wrapped-Coordinates" accesskey="p" rel="prev">Wrapped Coordinates</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Auxiliary-Coordinates-1"></a>
-<h3 class="section">3.21 Auxiliary Coordinates</h3>
-<a name="index-_002dX"></a>
-<a name="index-_002d_002dauxiliary"></a>
-<a name="index-standard_005fname"></a>
-<a name="index-coordinates"></a>
-<a name="index-CF-conventions-1"></a>
-<a name="index-_002dX-lon_005fmin_002clon_005fmax_002clat_005fmin_002clat_005fmax"></a>
-<a name="index-_002d_002dauxiliary-lon_005fmin_002clon_005fmax_002clat_005fmin_002clat_005fmax"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code><br>
-Short options: ‘<samp>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></samp>’<br>
-Long options:
-‘<samp>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></samp>’<br>
-</p></td></tr></table>
-<p>Utilize auxiliary coordinates specified in values of the coordinate
-variable’s <code>standard_name</code> attributes, if any, when interpreting
-hyperslab and multi-slab options.
-Also ‘<samp>--auxiliary</samp>’.
-This switch supports hyperslabbing cell-based grids over coordinate
-ranges.
-This works on datasets that associate coordinate variables to
-grid-mappings using the <acronym>CF</acronym>-convention (see <a href="#CF-Conventions">CF Conventions</a>)
-<code>coordinates</code> and <code>standard_name</code> attributes described
-<a href="http://cfconventions.org/1.6.html#coordinate-system">here</a>.
-Currently, <acronym>NCO</acronym> understands auxiliary coordinate variables
-pointed to by the <code>standard_name</code> attributes for <var>latitude</var> and
-<var>longitude</var>.
-Cells that contain a value within the user-specified range
-[<var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var>] are
-included in the output hyperslab.
-</p>
-<a name="index-cell_002dbased-grids"></a>
-<p>A cell-based grid collapses the horizontal spatial information
-(latitude and longitude) and stores it along a one-dimensional
-coordinate that has a one-to-one mapping to both latitude and longitude
-coordinates.
-Rectangular (in longitude and latitude) horizontal hyperslabs cannot
-be selected using the typical procedure (see <a href="#Hyperslabs">Hyperslabs</a>) of
-separately specifying ‘<samp>-d</samp>’ arguments for longitude and latitude.
-Instead, when the ‘<samp>-X</samp>’ is used, <acronym>NCO</acronym> learns the names of
-the latitude and longitude coordinates by searching the
-<code>standard_name</code> attribute of all variables until it finds
-the two variables whose <code>standard_name</code>’s are “latitude” and
-“longitude”, respectively.
-This <code>standard_name</code> attribute for latitude and longitude
-coordinates follows the <acronym>CF</acronym>-convention
-(see <a href="#CF-Conventions">CF Conventions</a>).
-</p>
-<p>Putting it all together, consider a variable <var>gds_3dvar</var> output from
-simulations on a cell-based geodesic grid.
-Although the variable contains three dimensions of data (time, latitude,
-and longitude), it is stored in the netCDF file with only two dimensions,
-<code>time</code> and <code>gds_crd</code>.
-</p><div class="example">
-<pre class="example">% ncks -m -C -v gds_3dvar ~/nco/data/in.nc
-gds_3dvar: type NC_FLOAT, 2 dimensions, 4 attributes, chunked? no, \
- compressed? no, packed? no, ID = 41
-gds_3dvar RAM size is 10*8*sizeof(NC_FLOAT) = 80*4 = 320 bytes
-gds_3dvar dimension 0: time, size = 10 NC_DOUBLE, dim. ID = 20 \
- (CRD)(REC)
-gds_3dvar dimension 1: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-gds_3dvar attribute 0: long_name, size = 17 NC_CHAR, value = \
- Geodesic variable
-gds_3dvar attribute 1: units, size = 5 NC_CHAR, value = meter
-gds_3dvar attribute 2: coordinates, size = 15 NC_CHAR, value = \
- lat_gds lon_gds
-gds_3dvar attribute 3: purpose, size = 64 NC_CHAR, value = \
- Test auxiliary coordinates like those that define geodesic grids
-</pre></div>
-<p>The <code>coordinates</code> attribute lists the names of the latitude and
-longitude coordinates, <code>lat_gds</code> and <code>lon_gds</code>, respectively.
-The <code>coordinates</code> attribute is recommended though optional.
-With it, the user can immediately identify which variables contain
-the latitude and longitude coordinates.
-Without a <code>coordinates</code> attribute it would be unclear at first
-glance whether a variable resides on a cell-based grid.
-In this example, <code>time</code> is a normal record dimension and
-<code>gds_crd</code> is the cell-based dimension.
-</p>
-<p>The cell-based grid file must contain two variables whose
-<code>standard_name</code> attributes are “latitude”, and “longitude”:
-</p><div class="example">
-<pre class="example">% ncks -m -C -v lat_gds,lon_gds ~/nco/data/in.nc
-lat_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 37
-lat_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
-lat_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-lat_gds attribute 0: long_name, size = 8 NC_CHAR, value = Latitude
-lat_gds attribute 1: standard_name, size = 8 NC_CHAR, value = latitude
-lat_gds attribute 2: units, size = 6 NC_CHAR, value = degree
-lat_gds attribute 3: purpose, size = 62 NC_CHAR, value = \
- 1-D latitude coordinate referred to by geodesic grid variables
-
-lon_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 38
-lon_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
-lon_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-lon_gds attribute 0: long_name, size = 9 NC_CHAR, value = Longitude
-lon_gds attribute 1: standard_name, size = 9 NC_CHAR, value = longitude
-lon_gds attribute 2: units, size = 6 NC_CHAR, value = degree
-lon_gds attribute 3: purpose, size = 63 NC_CHAR, value = \
- 1-D longitude coordinate referred to by geodesic grid variables
-</pre></div>
-<p>In this example <code>lat_gds</code> and <code>lon_gds</code> represent the
-latitude or longitude, respectively, of cell-based variables.
-These coordinates (must) have the same single dimension (<code>gds_crd</code>,
-in this case) as the cell-based variables.
-And the coordinates must be one-dimensional—multidimensional
-coordinates will not work.
-</p>
-<p>This infrastructure allows <acronym>NCO</acronym> to identify, interpret, and
-process (e.g., hyperslab) the variables on cell-based grids as easily
-as it works with regular grids.
-To time-average all the values between zero and 180 degrees<!-- /@w -->
-longitude and between plus and minus 30 degress<!-- /@w --> latitude, we use
-</p><div class="example">
-<pre class="example">ncra -O -X 0.,180.,-30.,30. -v gds_3dvar in.nc out.nc
-</pre></div>
-<p><acronym>NCO</acronym> accepts multiple ‘<samp>-X</samp>’ arguments for cell-based grid
-multi-slabs, just as it accepts multiple ‘<samp>-d</samp>’ arguments for
-multi-slabs of regular coordinates.
-</p><div class="example">
-<pre class="example">ncra -O -X 0.,180.,-30.,30. -X 270.,315.,45.,90. in.nc out.nc
-</pre></div>
-<p>The arguments to ‘<samp>-X</samp>’ are always interpreted as floating point
-numbers, i.e., as coordinate values rather than dimension indices
-so that these two commands produce identical results
-</p><div class="example">
-<pre class="example">ncra -X 0.,180.,-30.,30. in.nc out.nc
-ncra -X 0,180,-30,30 in.nc out.nc
-</pre></div>
-<p>In contrast, arguments to ‘<samp>-d</samp>’ require decimal places to be
-recognized as coordinates not indices (see <a href="#Hyperslabs">Hyperslabs</a>).
-We recommend always using decimal points with ‘<samp>-X</samp>’ arguments
-to avoid confusion.
-</p>
-<a name="UDUnits"></a> <!-- http://nco.sf.net/nco.html#UDUnits -->
-<a name="UDUnits2"></a> <!-- http://nco.sf.net/nco.html#UDUnits2 --><hr>
-<a name="UDUnits-Support"></a>
-<div class="header">
-<p>
-Next: <a href="#Rebasing-Time-Coordinate" accesskey="n" rel="next">Rebasing Time Coordinate</a>, Previous: <a href="#Auxiliary-Coordinates" accesskey="p" rel="prev">Auxiliary Coordinates</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="UDUnits-Support-1"></a>
-<h3 class="section">3.22 UDUnits Support</h3>
-<a name="index-UDUnits-1"></a>
-<a name="index-Unidata-2"></a>
-<a name="index-units"></a>
-<a name="index-attribute_002c-units"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"></a>
-<a name="index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"></a>
-<a name="index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-Long options:
-‘<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’,<br>
-‘<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>’<br>
-</p></td></tr></table>
-<p>There is more than one way to hyperskin a cat.
-The <a href="http://www.unidata.ucar.edu/packages/udunits">UDUnits</a> package
-provides a library which, if present, <acronym>NCO</acronym> uses to translate
-user-specified physical dimensions into the physical dimensions of data
-stored in netCDF files.
-Unidata provides UDUnits under the same terms as netCDF, so sites should
-install both.
-Compiling <acronym>NCO</acronym> with UDUnits support is currently optional but
-may become required in a future version of <acronym>NCO</acronym>.
-</p>
-<p>Two examples suffice to demonstrate the power and convenience of UDUnits
-support.
-<a name="index-MKS-units"></a>
-First, consider extraction of a variable containing non-record
-coordinates with physical dimensions stored in MKS units.
-In the following example, the user extracts all wavelengths
-in the visible portion of the spectrum in terms of the units
-very frequently used in visible spectroscopy, microns:
-</p><div class="example">
-<pre class="example">% ncks -C -H -v wvl -d wvl,"0.4 micron","0.7 micron" in.nc
-wvl[0]=5e-07 meter
-</pre></div>
-<a name="index-units-1"></a>
-<p>The hyperslab returns the correct values because the <var>wvl</var> variable
-is stored on disk with a length dimension that UDUnits recognizes in the
-<code>units</code> attribute.
-The automagical algorithm that implements this functionality is worth
-describing since understanding it helps one avoid some potential
-pitfalls.
-First, the user includes the physical units of the hyperslab dimensions
-she supplies, separated by a simple space from the numerical values of
-the hyperslab limits.
-She encloses each coordinate specifications in quotes so that the shell
-does not break the <em>value-space-unit</em> string into separate
-arguments before passing them to <acronym>NCO</acronym>.
-Double quotes (<kbd>"foo"</kbd>) or single quotes (<kbd>'foo'</kbd>) are equally
-valid for this purpose.
-Second, <acronym>NCO</acronym> recognizes that units translation is requested
-because each hyperslab argument contains text characters and non-initial
-spaces.
-Third, <acronym>NCO</acronym> determines whether the <var>wvl</var> is dimensioned
-with a coordinate variable that has a <code>units</code> attribute.
-<a name="index-coordinate-variable"></a>
-In this case, <var>wvl</var> itself is a coordinate variable.
-The value of its <code>units</code> attribute is <code>meter</code>.
-Thus <var>wvl</var> passes this test so UDUnits conversion is attempted.
-If the coordinate associated with the variable does not contain a
-<code>units</code> attribute, then <acronym>NCO</acronym> aborts.
-Fourth, <acronym>NCO</acronym> passes the specified and desired dimension strings
-(microns are specified by the user, meters are required by
-<acronym>NCO</acronym>) to the UDUnits library.
-Fifth, the UDUnits library that these dimension are commensurate
-and it returns the appropriate linear scaling factors to convert from
-microns to meters to <acronym>NCO</acronym>.
-If the units are incommensurate (i.e., not expressible in the same
-fundamental MKS units), or are not listed in the UDUnits database, then
-NCO aborts since it cannot determine the user’s intent.
-Finally, <acronym>NCO</acronym> uses the scaling information to convert the
-user-specified hyperslab limits into the same physical dimensions as
-those of the corresponding cooridinate variable on disk.
-At this point, <acronym>NCO</acronym> can perform a coordinate hyperslab using
-the same algorithm as if the user had specified the hyperslab without
-requesting units conversion.
-</p>
-<a name="index-units-2"></a>
-<a name="index-time"></a>
-<p>The translation and dimensional innterpretation of time coordinates
-shows a more powerful, and probably more common, UDUnits application.
-In this example, the user prints all data between 4 PM<!-- /@w --> and 7 PM<!-- /@w -->
-on December 8<!-- /@w -->, 1999, from a variable whose time dimension is hours
-since the year 1900:
-</p><div class="example">
-<pre class="example">% ncks -u -H -C -v time_udunits -d time_udunits,"1999-12-08 \
- 16:00:0.0","1999-12-08 19:00:0.0" in.nc
-time_udunits[1]=876018 hours since 1900-01-01 00:00:0.0
-</pre></div>
-<a name="index-stride-3"></a>
-<a name="index-whitespace"></a>
-<p>Here, the user invokes the stride (see <a href="#Stride">Stride</a>) capability to obtain
-every other timeslice.
-This is possible because the UDUnits feature is additive, not
-exclusive—it works in conjunction with all other hyperslabbing
-(see <a href="#Hyperslabs">Hyperslabs</a>) options and in all operators which support
-hyperslabbing.
-The following example shows how one might average data in a
-time period spread across multiple input files
-</p><div class="example">
-<pre class="example">ncra -d time,"1939-09-09 12:00:0.0","1945-05-08 00:00:0.0" \
- in1.nc in2.nc in3.nc out.nc
-</pre></div>
-<p>Note that there is no excess whitespace before or after the individual
-elements of the ‘<samp>-d</samp>’ argument.
-<a name="index-shell-2"></a>
-This is important since, as far as the shell knows, ‘<samp>-d</samp>’ takes
-only <em>one</em> command-line argument.
-Parsing this argument into its component
-<code><var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code> elements
-(see <a href="#Hyperslabs">Hyperslabs</a>) is the job of <acronym>NCO</acronym>.
-When unquoted whitespace is present between these elements, the shell
-passes <acronym>NCO</acronym> arugment fragments which will not parse as
-intended.
-</p>
-<p><acronym>NCO</acronym> implemented support for the UDUnits2 library with version
-3.9.2 (August, 2007).
-The
-<a href="http://www.unidata.ucar.edu/software/udunits/udunits-2/udunits2.html">UDUnits2</a> package supports non-ASCII characters and logarithmic units.
-We are interested in user-feedback on these features.
-</p>
-<p>One aspect that deserves mention is that UDUnits, and thus
-<acronym>NCO</acronym>, supports run-time definition of the location of the
-relevant UDUnits databases.
-With UDUnits version 1<!-- /@w -->, users may specify the directory which
-contains the UDUnits database, <samp>udunits.dat</samp>, via the
-<code>UDUNITS_PATH</code> environment variable.
-With UDUnits version 2<!-- /@w -->, users may specify the UDUnits database file
-itself, <samp>udunits2.xml</samp>, via the <code>UDUNITS2_XML_PATH</code>
-environment variable.
-</p><div class="example">
-<pre class="example"># UDUnits1
-export UDUNITS_PATH='/unusual/location/share/udunits'
-# UDUnits2
-export UDUNITS2_XML_PATH='/unusual/location/share/udunits/udunits2.xml'
-</pre></div>
-<p>This run-time flexibility can enable the full functionality of
-pre-built binaries on machines with libraries in different locations.
-</p>
-<a name="index-Climate-and-Forecast-Metadata-Convention"></a>
-<a name="index-CF-conventions-2"></a>
-<p>The <a href="http://www.unidata.ucar.edu/packages/udunits">UDUnits</a>
-package documentation describes the supported formats of time
-dimensions.
-Among the metadata conventions that adhere to these formats are the
-<a href="http://cf-pcmdi.llnl.gov">Climate and Forecast (CF) Conventions</a> and the
-<a href="http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html">Cooperative Ocean/Atmosphere Research Data Service (COARDS) Conventions</a>.
-The following ‘<samp>-d arguments</samp>’ extract the same data using
-commonly encountered time dimension formats:
-</p><div class="example">
-<pre class="example">-d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
--d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
--d time,'1918-11-11T00:00:0.0Z','1939-09-09T00:00:0.0Z'
--d time,'1918-11-11','1939-09-09'
--d time,'1918-11-11','1939-9-9'
-</pre></div>
-<p>All of these formats include at least one dash <kbd>-</kbd> in a
-non-leading character position (a dash in a leading character position
-is a negative sign).
-<acronym>NCO</acronym> assumes that a space, colon, or non-leading dash in a
-limit string indicates that a UDUnits units conversion is requested.
-Some date formats like YYYYMMDD that are valid in UDUnits are ambiguous
-to <acronym>NCO</acronym> because it cannot distinguish a purely numerical date
-(i.e., no dashes or text characters in it) from a coordinate or index
-value:
-</p><div class="example">
-<pre class="example">-d time,1918-11-11 # Interpreted as the date November 11, 1918
--d time,19181111 # Interpreted as time-dimension index 19181111
--d time,19181111. # Interpreted as time-coordinate value 19181111.0
-</pre></div>
-<p>Hence, use the YYYY-MM-DD format rather than YYYYMMDD for dates.
-</p>
-<p>As of version 4.0.0 (January, 2010), <acronym>NCO</acronym> supports some
-calendar attributes specified by the <acronym>CF</acronym> conventions.
-</p><dl compact="compact">
-<dt><strong>Supported types:</strong></dt>
-<dd><p>"365_day"/"noleap", "360_day", "gregorian", "standard"
-</p></dd>
-<dt><strong>Unsupported types:</strong></dt>
-<dd><p>"366_day"/"all_leap","proleptic_gregorian","julian","none"
-</p></dd>
-</dl>
-<p>Unsupported types default to mixed Gregorian/Julian as defined by
-UDUnits.
-</p>
-<p>An Example: Consider the following netCDF variable
-</p>
-<div class="example">
-<pre class="example">variables:
- double lon_cal(lon_cal) ;
- lon_cal:long_name = "lon_cal" ;
- lon_cal:units = "days since 1964-2-28 0:0:0" ;
- lon_cal:calendar = "365_day" ;
-data:
- lon_cal = 1,2,3,4,5,6,7,8,9,10;
-</pre></div>
-<p>‘<samp>ncks -v lon_cal -d lon_cal,'1964-3-1 0:00:0.0','1964-3-4 00:00:0.0'</samp>’
-results in <code>lon_cal=1,2,3,4</code>.
-</p>
-<a name="index-MKS-units-1"></a>
-<a name="index-God"></a>
-<p>netCDF variables should always be stored with MKS (i.e., God’s) units,
-so that application programs may assume MKS dimensions apply to all
-input variables.
-The UDUnits feature is intended to alleviate some of the <acronym>NCO</acronym>
-user’s pain when handling MKS units.
-It connects users who think in human-friendly units (e.g.,
-miles, millibars, days) to extract data which are always stored in God’s
-units, MKS (e.g., meters, Pascals, seconds).
-The feature is not intended to encourage writers to store data in
-esoteric units (e.g., furlongs, pounds per square inch, fortnights).
-</p>
-<a name="time_rebase"></a> <!-- http://nco.sf.net/nco.html#time_rebase -->
-<a name="rbs"></a> <!-- http://nco.sf.net/nco.html#rbs --><hr>
-<a name="Rebasing-Time-Coordinate"></a>
-<div class="header">
-<p>
-Next: <a href="#Multiple-Record-Dimensions" accesskey="n" rel="next">Multiple Record Dimensions</a>, Previous: <a href="#UDUnits-Support" accesskey="p" rel="prev">UDUnits Support</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Rebasing-Time-Coordinate-1"></a>
-<h3 class="section">3.23 Rebasing Time Coordinate</h3>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability:
-<code>ncra</code>, <code>ncrcat</code>
-Short options: None<br>
-</p></td></tr></table>
-
-<p>Time rebasing is invoked when numerous files share a common record
-coordinate, and the record coordinate units change among input files.
-The rebasing is performed automatically if and only if UDUnits is
-installed.
-Usually rebasing occurs when the recoordinate is a time-based variable,
-and times are recorded in units of a time-since-basetime, and the
-basetime changes from file to file.
-Since the output file can have only one unit (i.e., one basetime) for
-the record coordinate, <acronym>NCO</acronym>, in such cases, chooses the units
-of the first input file to be the units of the output file.
-It is necessary to “rebase” all the input record variables to this
-output time unit in order for the output file to have the correct
-values.
-</p>
-<p>For example suppose the time coordinate is in hours and each day in
-January is stored in its own daily file.
-Each daily file records the temperature variable <code>tpt(time)</code>
-with an (unadjusted) <code>time</code> coordinate value between 0–23 hours,
-and uses the <code>units</code> attribute to advance the base time:
-</p><div class="example">
-<pre class="example">file01.nc time:units="hours since 1990-1-1"
-file02.nc time:units="hours since 1990-1-2"
-...
-file31.nc time:units="hours since 1990-1-31"
-</pre></div>
-
-<div class="example">
-<pre class="example">// Mean noontime temperature in January
-ncra -v tpt -d time,"1990-1-1 12:00:00","1990-1-31 23:59:59",24 \
- file??.nc noon.nc
-
-// Concatenate day2 noon through day3 noon records
-ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file01.nc file02.nc file03.nc noon.nc
-
-// Results: time is "re-based" to the time units in "file01.nc"
-time=36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, \
- 51, 52, 53, 54, 55, 56, 57, 58, 59 ;
-
-// If we repeat the above command but with only two input files...
-ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file02.nc file03 noon.nc
-
-// ...then output time coordinate is based on time units in "file02.nc"
-time = 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, \
- 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 ;
-</pre></div>
-<p>As of <acronym>NCO</acronym> version 4.2.1 (August, 2012), <acronym>NCO</acronym>
-automatically rebases not only the record coordinate (<code>time</code>, here)
-but also any bounds associated with the record coordinate (e.g.,
-<code>time_bnds</code>) (see <a href="#CF-Conventions">CF Conventions</a>).
-</p>
-<a name="mrd"></a> <!-- http://nco.sf.net/nco.html#mrd --><hr>
-<a name="Multiple-Record-Dimensions"></a>
-<div class="header">
-<p>
-Next: <a href="#Missing-Values" accesskey="n" rel="next">Missing Values</a>, Previous: <a href="#Rebasing-Time-Coordinate" accesskey="p" rel="prev">Rebasing Time Coordinate</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Multiple-Record-Dimensions-1"></a>
-<h3 class="section">3.24 Multiple Record Dimensions</h3>
-<a name="index-netCDF4-2"></a>
-<a name="index-_002d_002dmrd"></a>
-<a name="index-_002d_002dmultiple_005frecord_005fdimensions"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability:
-<code>ncecat</code>, <code>ncpdq</code>
-Short options: None<br>
-Long options: ‘<samp>--mrd</samp>’<br>
-</p></td></tr></table>
-<p>The netCDF3 file format allows only one record dimension, and that
-dimension must be the first dimension (i.e., the least rapidly varying
-dimension) of any variable in which it appears.
-This imposes certain rules on how operators must perform operations
-that alter the ordering of dimensions or the number of record variables.
-The netCDF4 file format has no such restrictions.
-Files and variables may have any number of record dimensions in any
-order.
-This additional flexibility of netCDF4 can only be realized by
-selectively abandoning the constraints that would make operations
-behave completely consistently between netCDF3 and netCDF4 files.
-</p>
-<p><acronym>NCO</acronym> chooses, by default, to impose netCDF3-based constraints
-on netCDF4 files.
-This reduces the number of unanticipated consequences and keeps the
-operators functioning in a familiar way.
-Put another way, <acronym>NCO</acronym> limits production of additional record
-dimensions so processing netCDF4 files leads to the same results as
-processing netCDF4 files.
-Users can override this default with the ‘<samp>--mrd</samp>’ (or
-‘<samp>--multiple_record_dimension</samp>’) switch, which enables netCDF4
-variables to accumulate additional record dimensions.
-</p>
-<p>How can additional record dimensions be produced?
-Most commonly <code>ncecat</code> (in record-aggregate mode) defines a new
-leading record dimension.
-In netCDF4 files this becomes an additional record dimension unless the
-original record dimension is changed to a fixed dimension (as must be
-done in netCDF3 files).
-Also when <code>ncpdq</code> reorders dimensions it can preserve the
-“record” property of record variables.
-<code>ncpdq</code> tries to define as a record dimension whichever
-dimension ends up first in a record variable, and, in netCDF4 files,
-this becomes an additional record dimension unless the original record
-dimension is changed to a fixed dimension (as must be done in netCDF3
-files).
-It it easier if <code>ncpdq</code> and <code>ncecat</code> do not increase
-the number of record dimensions in a variable so that is the default.
-Use ‘<samp>--mrd</samp>’ to override this.
-</p>
-<a name="missing_value"></a> <!-- http://nco.sf.net/nco.html#missing_value -->
-<a name="_FillValue"></a> <!-- http://nco.sf.net/nco.html#_FillValue -->
-<a name="fll_val"></a> <!-- http://nco.sf.net/nco.html#fll_val -->
-<a name="mss_val"></a> <!-- http://nco.sf.net/nco.html#mss_val -->
-<a name="mss"></a> <!-- http://nco.sf.net/nco.html#mss --><hr>
-<a name="Missing-Values"></a>
-<div class="header">
-<p>
-Next: <a href="#Chunking" accesskey="n" rel="next">Chunking</a>, Previous: <a href="#Multiple-Record-Dimensions" accesskey="p" rel="prev">Multiple Record Dimensions</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Missing-values"></a>
-<h3 class="section">3.25 Missing values</h3>
-<a name="index-missing-values"></a>
-<a name="index-data_002c-missing"></a>
-<a name="index-averaging-data"></a>
-<a name="index-missing_005fvalue"></a>
-<a name="index-_005fFillValue"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncflint</code>, <code>ncpdq</code>, <code>ncra</code>, <code>ncwa</code><br>
-Short options: None<br>
-</p></td></tr></table>
-
-<p>The phrase <em>missing data</em> refers to data points that are missing,
-invalid, or for any reason not intended to be arithmetically processed
-in the same fashion as valid data.
-<a name="index-arithmetic-operators"></a>
-The <acronym>NCO</acronym> arithmetic operators attempt to handle missing data in
-an intelligent fashion.
-There are four steps in the <acronym>NCO</acronym> treatment of missing data:
-</p><ol>
-<li> Identifying variables that may contain missing data.
-
-<p><acronym>NCO</acronym> follows the convention that missing data should be stored
-with the <var>_FillValue</var> specified in the variable’s <code>_FillValue</code>
-attributes.
-The <em>only</em> way <acronym>NCO</acronym> recognizes that a variable <em>may</em>
-contain missing data is if the variable has a <code>_FillValue</code>
-attribute.
-In this case, any elements of the variable which are numerically equal
-to the <var>_FillValue</var> are treated as missing data.
-</p>
-<p><acronym>NCO</acronym> adopted the behavior that the default attribute name, if
-any, assumed to specify the value of data to ignore is <code>_FillValue</code>
-with version 3.9.2 (August, 2007).
-Prior to that, the <code>missing_value</code> attribute, if any, was assumed to
-specify the value of data to ignore.
-Supporting both of these attributes simultaneously is not practical.
-Hence the behavior <acronym>NCO</acronym> once applied to <var>missing_value</var> it
-now applies to any <var>_FillValue</var>.
-<acronym>NCO</acronym> now treats any <var>missing_value</var> as normal data
-<a name="DOCF35" href="#FOOT35"><sup>35</sup></a>.
-</p>
-<a name="index-ncrename"></a>
-<a name="index-ncatted-3"></a>
-<p>It has been and remains most advisable to create both <code>_FillValue</code>
-and <code>missing_value</code> attributes with identical values in datasets.
-Many legacy datasets contain only <code>missing_value</code> attributes.
-<acronym>NCO</acronym> can help migrating datasets between these conventions.
-One may use <code>ncrename</code> (see <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>) to
-rename all <code>missing_value</code> attributes to <code>_FillValue</code>:
-</p><div class="example">
-<pre class="example">ncrename -a .missing_value,_FillValue inout.nc
-</pre></div>
-<p>Alternatively, one may use
-<code>ncatted</code> (see <a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a>) to
-add a <code>_FillValue</code> attribute to all variables
-</p><div class="example">
-<pre class="example">ncatted -O -a _FillValue,,o,f,1.0e36 inout.nc
-</pre></div>
-
-</li><li> Converting the <var>_FillValue</var> to the type of the variable, if
-neccessary.
-
-<p>Consider a variable <var>var</var> of type <var>var_type</var> with a
-<code>_FillValue</code> attribute of type <var>att_type</var> containing the
-value <var>_FillValue</var>.
-As a guideline, the type of the <code>_FillValue</code> attribute should be
-the same as the type of the variable it is attached to.
-If <var>var_type</var> equals <var>att_type</var> then <acronym>NCO</acronym>
-straightforwardly compares each value of <var>var</var> to
-<var>_FillValue</var> to determine which elements of <var>var</var> are to be
-treated as missing data.
-<a name="index-C-language-1"></a>
-If not, then <acronym>NCO</acronym> converts <var>_FillValue</var> from
-<var>att_type</var> to <var>var_type</var> by using the implicit conversion rules
-of C<!-- /@w -->, or, if <var>att_type</var> is <code>NC_CHAR</code>
-<a name="DOCF36" href="#FOOT36"><sup>36</sup></a>, by typecasting the results of the C function<!-- /@w -->
-<code>strtod(<var>_FillValue</var>)</code>.
-<a name="index-ncatted-1"></a>
-You may use the <acronym>NCO</acronym> operator <code>ncatted</code> to change the
-<code>_FillValue</code> attribute and all data whose data is
-<var>_FillValue</var> to a new value
-(see <a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a>).
-</p>
-</li><li> Identifying missing data during arithmetic operations.
-
-<a name="index-performance-5"></a>
-<a name="index-operator-speed-4"></a>
-<a name="index-speed-5"></a>
-<a name="index-execution-time-4"></a>
-<a name="index-arithmetic-operators-1"></a>
-<p>When an <acronym>NCO</acronym> arithmetic operator processes a variable <var>var</var>
-with a <code>_FillValue</code> attribute, it compares each value of
-<var>var</var> to <var>_FillValue</var> before performing an operation.
-Note the <var>_FillValue</var> comparison imposes a performance penalty
-on the operator.
-Arithmetic processing of variables which contain the
-<code>_FillValue</code> attribute always incurs this penalty, even when
-none of the data are missing.
-Conversely, arithmetic processing of variables which do not contain the
-<code>_FillValue</code> attribute never incurs this penalty.
-In other words, do not attach a <code>_FillValue</code> attribute to a
-variable which does not contain missing data.
-This exhortation can usually be obeyed for model generated data, but it
-may be harder to know in advance whether all observational data will be
-valid or not.
-</p>
-</li><li> Treatment of any data identified as missing in arithmetic operators.
-
-<a name="index-nces-1"></a>
-<a name="index-ncra-1"></a>
-<a name="index-ncwa-2"></a>
-<a name="index-ncbo"></a>
-<a name="index-ncflint-1"></a>
-<p><acronym>NCO</acronym> averagers (<code>ncra</code>, <code>nces</code>, <code>ncwa</code>)
-do not count any element with the value <var>_FillValue</var> towards the
-average.
-<code>ncbo</code> and <code>ncflint</code> define a <var>_FillValue</var> result
-when either of the input values is a <var>_FillValue</var>.
-Sometimes the <var>_FillValue</var> may change from file to file in a
-multi-file operator, e.g., <code>ncra</code>.
-<acronym>NCO</acronym> is written to account for this (it always compares a
-variable to the <var>_FillValue</var> assigned to that variable in the
-current file).
-Suffice it to say that, in all known cases, <acronym>NCO</acronym> does “the
-right thing”.
-</p>
-<p>It is impossible to determine and store the correct result of a binary
-operation in a single variable.
-One such corner case occurs when both operands have differing
-<var>_FillValue</var> attributes, i.e., attributes with different
-numerical values.
-Since the output (result) of the operation can only have one
-<var>_FillValue</var>, some information may be lost.
-In this case, <acronym>NCO</acronym> always defines the output variable to have
-the same <var>_FillValue</var> as the first input variable.
-Prior to performing the arithmetic operation, all values of the second
-operand equal to the second <var>_FillValue</var> are replaced with the
-first <var>_FillValue</var>.
-Then the arithmetic operation proceeds as normal, comparing each element
-of each operand to a single <var>_FillValue</var>.
-Comparing each element to two distinct <var>_FillValue</var>’s would be
-much slower and would be no likelier to yield a more satisfactory
-answer.
-In practice, judicious choice of <var>_FillValue</var> values prevents any
-important information from being lost.
-</p></li></ol>
-
-<a name="chunking"></a> <!-- http://nco.sf.net/nco.html#chunking -->
-<a name="cnk"></a> <!-- http://nco.sf.net/nco.html#cnk -->
-<a name="cnk_sz"></a> <!-- http://nco.sf.net/nco.html#cnk_sz -->
-<a name="chunk_size"></a> <!-- http://nco.sf.net/nco.html#chunk_size --><hr>
-<a name="Chunking"></a>
-<div class="header">
-<p>
-Next: <a href="#Compression" accesskey="n" rel="next">Compression</a>, Previous: <a href="#Missing-Values" accesskey="p" rel="prev">Missing Values</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Chunking-1"></a>
-<h3 class="section">3.26 Chunking</h3>
-<a name="index-_002d_002dcnk_005fbyt"></a>
-<a name="index-_002d_002dcnk_005fdmn"></a>
-<a name="index-_002d_002dcnk_005fmap"></a>
-<a name="index-_002d_002dcnk_005fmin"></a>
-<a name="index-_002d_002dcnk_005fplc"></a>
-<a name="index-_002d_002dcnk_005fscl"></a>
-<a name="index-_002d_002dchunk_005fbyte"></a>
-<a name="index-_002d_002dchunk_005fdimension"></a>
-<a name="index-_002d_002dchunk_005fmap"></a>
-<a name="index-_002d_002dchunk_005fmin"></a>
-<a name="index-_002d_002dchunk_005fpolicy"></a>
-<a name="index-_002d_002dchunk_005fscalar"></a>
-<a name="index-chunking-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: none<br>
-Long options:
-‘<samp>--cnk_byt <var>cnk_sz</var></samp>’, ‘<samp>--chunk_byte <var>cnk_sz</var></samp>’<br>
-‘<samp>--cnk_dmn <var>dmn_nm</var>,<var>cnk_sz</var></samp>’,
-‘<samp>--chunk_dimension <var>dmn_nm</var>,<var>cnk_sz</var></samp>’<br>,
-‘<samp>--cnk_map <var>cnk_map</var></samp>’, ‘<samp>--chunk_map <var>cnk_map</var></samp>’,<br>
-‘<samp>--cnk_min <var>var_sz</var></samp>’, ‘<samp>--chunk_min <var>var_sz</var></samp>’,<br>
-‘<samp>--cnk_plc <var>cnk_plc</var></samp>’, ‘<samp>--chunk_policy <var>cnk_plc</var></samp>’,<br>
-‘<samp>--cnk_scl <var>cnk_sz</var></samp>’, ‘<samp>--chunk_scalar <var>cnk_sz</var></samp>’<br>
-</p></td></tr></table>
-
-<p>All netCDF4-enabled <acronym>NCO</acronym> operators that define variables
-support a plethora of chunksize options.
-Chunking can significantly accelerate or degrade read/write access
-to large datasets.
-Dataset chunking issues are described by <acronym>THG</acronym> and Unidata
-<a href="http://www.hdfgroup.org/HDF5/doc/H5.user/Chunking.html">here</a>,
-<a href="http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_why_it_matters">here</a>,
-and
-<a href="http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes">here</a>.
-<acronym>NCO</acronym> authors are working on generalized algorithms and
-applications of chunking strategies (stay tuned for more in 2015).
-</p>
-<a name="index-chunking-policy"></a>
-<a name="index-chunking-map"></a>
-<a name="index-chunksize"></a>
-<a name="index-blocksize"></a>
-<p>The <acronym>NCO</acronym> chunking implementation is designed to be flexible.
-Users control four aspects of the chunking implementation.
-These are the <em>chunking policy</em>, <em>chunking map</em>,
-<em>chunksize</em>, and <em>minimum chunksize</em>.
-The chunking policy determines <em>which</em> variables to chunk, and
-the chunking map determines how (with what exact sizes) to chunk
-those variables.
-These are high-level mechanisms that apply to an entire file and all
-variables and dimensions.
-The chunksize option allows per-dimension specification of sizes that
-will override the selected (or default) chunking map.
-</p>
-<p>The <var>var_sz</var> parameter is the minimum size in bytes (not elements)
-of variables to chunk.
-This threshold is intended to restrict use of chunking to variables
-for which it is efficient.
-By default this minimum variable size for chunking is twice the system
-blocksize (when available) and is 8192 bytes<!-- /@w --> otherwise.
-Users may set this to any value with the ‘<samp>--cnk_min</samp>’ switch.
-</p>
-<a name="index-hyperslab-1"></a>
-<a name="index-ncpdq-2"></a>
-<a name="index-packing-1"></a>
-<p>The chunking implementation is similar to a hybrid of the
-<code>ncpdq</code> packing policies
-(see <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a>) and hyperslab
-specifications (see <a href="#Hyperslabs">Hyperslabs</a>).
-Each aspect is intended to have a sensible default, so that many users
-only need to set one switch to obtain sensible chunking.
-Power users can tune chunking with the three switches in tandem to
-obtain optimal performance.
-</p>
-<p>By default, <acronym>NCO</acronym> preserves the chunking characteristics
-of the input file in the output file
-<a name="DOCF37" href="#FOOT37"><sup>37</sup></a>.
-In other words, preserving chunking requires no switches or user
-intervention.
-</p>
-<p>Users specify the desired chunking policy with the ‘<samp>-P</samp>’ switch
-(or its long option equivalents, ‘<samp>--cnk_plc</samp>’ and
-‘<samp>--chunk_policy</samp>’) and its <var>cnk_plc</var> argument.
-As of August, 2014, six chunking policies are implemented:<br>
-<a name="index-all"></a>
-<a name="index-g2d"></a>
-<a name="index-g3d"></a>
-<a name="index-r1d"></a>
-<a name="index-xpl"></a>
-<a name="index-xst"></a>
-<a name="index-cnk_005fall"></a>
-<a name="index-cnk_005fg2d"></a>
-<a name="index-cnk_005fg3d"></a>
-<a name="index-cnk_005fr1d"></a>
-<a name="index-cnk_005fxpl"></a>
-<a name="index-cnk_005fxst"></a>
-<a name="index-plc_005fall"></a>
-<a name="index-plc_005fg2d"></a>
-<a name="index-plc_005fg3d"></a>
-<a name="index-plc_005fr1d"></a>
-<a name="index-plc_005fxpl"></a>
-<a name="index-plc_005fxst"></a>
-</p><dl compact="compact">
-<dt><em>Chunk All Variables</em></dt>
-<dd><p>Definition: Chunk all variables possible.
-For obvious reasons, scalar variables cannot be chunked.<br>
-Alternate invocation: <code>ncchunk</code><br>
-<var>cnk_plc</var> key values: ‘<samp>all</samp>’, ‘<samp>cnk_all</samp>’, ‘<samp>plc_all</samp>’<br>
-Mnemonic: All<br>
-</p></dd>
-<dt><em>Chunk Variables with at least Two Dimensions [<em>default</em>]</em></dt>
-<dd><p>Definition: Chunk all variables possible with at least two dimensions<br>
-Alternate invocation: none<br>
-<var>cnk_plc</var> key values: ‘<samp>g2d</samp>’, ‘<samp>cnk_g2d</samp>’, ‘<samp>plc_g2d</samp>’<br>
-Mnemonic: <em>G</em>reater than or equal to <em>2</em> <em>D</em>imensions<br>
-</p></dd>
-<dt><em>Chunk Variables with at least Three Dimensions</em></dt>
-<dd><p>Definition: Chunk all variables possible with at least three dimensions<br>
-Alternate invocation: none<br>
-<var>cnk_plc</var> key values: ‘<samp>g3d</samp>’, ‘<samp>cnk_g3d</samp>’, ‘<samp>plc_g3d</samp>’<br>
-Mnemonic: <em>G</em>reater than or equal to <em>3</em> <em>D</em>imensions<br>
-</p></dd>
-<dt><em>Chunk One-Dimensional Record Variables</em></dt>
-<dd><p>Definition: Chunk all 1-D record variables<br>
-Alternate invocation: none<br>
-Any specified (with ‘<samp>--cnk_dmn</samp>’) record dimension chunksizes will
-be applied only to 1-D record variables (and to no other variables).
-Other dimensions may be chunked with their own ‘<samp>--cnk_dmn</samp>’ options
-that will apply to all variables.
-<var>cnk_plc</var> key values: ‘<samp>r1d</samp>’, ‘<samp>cnk_r1d</samp>’, ‘<samp>plc_r1d</samp>’<br>
-Mnemonic: <em>R</em>ecord <em>1</em>-<em>D</em> variables<br>
-</p></dd>
-<dt><em>Chunk Variables Containing Explicitly Chunked Dimensions</em></dt>
-<dd><p>Definition: Chunk all variables possible that contain at least one
-dimension whose chunksize was explicitly set with the ‘<samp>--cnk_dmn</samp>’ option.
-Alternate invocation: none<br>
-<var>cnk_plc</var> key values: ‘<samp>xpl</samp>’, ‘<samp>cnk_xpl</samp>’, ‘<samp>plc_xpl</samp>’<br>
-Mnemonic: E<em>XPL</em>icitly specified dimensions<br>
-</p></dd>
-<dt><em>Chunk Variables that are already Chunked</em></dt>
-<dd><p>Definition: Chunk only variables that are already chunked in the input
-file.
-When used in conjunction with ‘<samp>cnk_map=xst</samp>’ this option preserves
-and copies the chunking parameters from the input to the output file.
-Alternate invocation: none<br>
-<var>cnk_plc</var> key values: ‘<samp>xst</samp>’, ‘<samp>cnk_xst</samp>’, ‘<samp>plc_xst</samp>’<br>
-Mnemonic: E<em>X</em>i<em>ST</em>ing chunked variables<br>
-</p></dd>
-<dt><em>Chunk Variables with <acronym>NCO</acronym> recommendations</em></dt>
-<dd><p>Definition: Chunk all variables according to <acronym>NCO</acronym> best
-practices.
-This is a virtual option that ensures the chunking policy is (in the
-subjective opinion of the authors) the best policy for typical usage.
-As of <acronym>NCO</acronym> version 4.4.8 (February, 2015), this virtual policy
-implements ‘<samp>map_rew</samp>’ for 3-D variables and ‘<samp>map_lfp</samp>’ for all
-other variables.<br>
-Alternate invocation: none<br>
-<var>cnk_plc</var> key values: ‘<samp>nco</samp>’, ‘<samp>cnk_nco</samp>’, ‘<samp>plc_nco</samp>’<br>
-Mnemonic: <em>N</em>et<em>C</em>DF<em>O</em>perator<br>
-</p></dd>
-<dt><em>Unchunking</em></dt>
-<dd><p>Definition: Unchunk all variables possible.
-The <acronym>HDF5</acronym> storge layer requires that record variables (i.e.,
-variables that contain at least one record dimension) must be chunked.
-Also variables that are compressed or use checksums must be chunked.
-Such variables cannot be unchunked.<br>
-Alternate invocation: <code>ncunchunk</code><br>
-<var>cnk_plc</var> key values: ‘<samp>uck</samp>’, ‘<samp>cnk_uck</samp>’, ‘<samp>plc_uck</samp>’, ‘<samp>unchunk</samp>’<br>
-Mnemonic: <em>U</em>n<em>C</em>hun<em>K</em><br>
-</p></dd>
-</dl>
-<p>Equivalent key values are fully interchangeable.
-Multiple equivalent options are provided to satisfy disparate needs
-and tastes of <acronym>NCO</acronym> users working with scripts and from the
-command line.
-</p>
-<a name="index-chunking-map-1"></a>
-<a name="index-degenerate-dimension"></a>
-<a name="index-cnk_005fmap"></a>
-<a name="index-_002dM-cnk_005fmap"></a>
-<a name="index-_002d_002dcnk_005fmap-cnk_005fmap"></a>
-<a name="index-_002d_002dmap-cnk_005fmap"></a>
-<p>The chunking algorithms must know the chunksizes of each dimension of
-each variable to be chunked.
-The correspondence between the input variable shape and the chunksizes
-is called the <em>chunking map</em>.
-The user specifies the desired chunking map with the ‘<samp>-M</samp>’ switch
-(or its long option equivalents, ‘<samp>--cnk_map</samp>’ and
-‘<samp>--chunk_map</samp>’) and its <var>cnk_map</var> argument.
-Eight chunking maps are currently implemented:<br>
-<a name="index-dmn"></a>
-<a name="index-scl"></a>
-<a name="index-prd"></a>
-<a name="index-lfp"></a>
-<a name="index-rd1"></a>
-<a name="index-xst-1"></a>
-<a name="index-rew"></a>
-<a name="index-nc4"></a>
-<a name="index-cnk_005fdmn"></a>
-<a name="index-cnk_005fscl"></a>
-<a name="index-cnk_005fprd"></a>
-<a name="index-cnk_005flfp"></a>
-<a name="index-cnk_005frd1"></a>
-<a name="index-cnk_005fxst-1"></a>
-<a name="index-cnk_005frew"></a>
-<a name="index-cnk_005fnc4"></a>
-<a name="index-map_005fdmn"></a>
-<a name="index-map_005fscl"></a>
-<a name="index-map_005fprd"></a>
-<a name="index-map_005flfp"></a>
-<a name="index-map_005frd1"></a>
-<a name="index-map_005fxst"></a>
-<a name="index-map_005frew"></a>
-<a name="index-map_005fnc4"></a>
-<a name="index-Chris-Barker"></a>
-</p><dl compact="compact">
-<dt><em>Chunksize Equals Dimension Size [<em>default</em>]</em></dt>
-<dd><p>Definition: Chunksize defaults to dimension size.
-Explicitly specify chunksizes for particular dimensions with
-‘<samp>--cnk_dmn</samp>’ option.<br>
-<var>cnk_map</var> key values: ‘<samp>dmn</samp>’, ‘<samp>cnk_dmn</samp>’, ‘<samp>map_dmn</samp>’<br>
-Mnemonic: <em>D</em>i<em>M</em>e<em>N</em>sion<br>
-</p></dd>
-<dt><em>Chunksize Equals Dimension Size except Record Dimension</em></dt>
-<dd><p>Definition: Chunksize equals dimension size except record dimension has size one.
-Explicitly specify chunksizes for particular dimensions with
-‘<samp>--cnk_dmn</samp>’ option.<br>
-<var>cnk_map</var> key values: ‘<samp>rd1</samp>’, ‘<samp>cnk_rd1</samp>’, ‘<samp>map_rd1</samp>’<br>
-Mnemonic: <em>R</em>ecord <em>D</em>imension size <em>1</em><br>
-</p></dd>
-<dt><em>Chunksize Equals Scalar Size Specified</em></dt>
-<dd><p>Definition: Chunksize for all dimensions is set with the
-‘<samp>--cnk_scl</samp>’ option.<br>
-<var>cnk_map</var> key values: ‘<samp>xpl</samp>’, ‘<samp>cnk_xpl</samp>’, ‘<samp>map_xpl</samp>’<br>
-Mnemonic: E<em>XPL</em>icitly specified dimensions<br>
-</p></dd>
-<dt><em>Chunksize Product Matches Scalar Size Specified</em></dt>
-<dd><p>Definition: The product of the chunksizes for each variable
-matches (approximately equals) the size specified with the
-‘<samp>--cnk_scl</samp>’ option.
-A dimension of size one is said to be <em>degenerate</em>.
-For a variable of rank <var>R</var> (i.e., with <var>R</var> non-degenerate
-dimensions), the chunksize in each non-degenerate dimension is the
-<var>R</var>th root of <var>cnk_scl</var>.<br>
-<var>cnk_map</var> key values: ‘<samp>prd</samp>’, ‘<samp>cnk_prd</samp>’, ‘<samp>map_prd</samp>’<br>
-Mnemonic: <em>PR</em>o<em>D</em>uct<br>
-</p></dd>
-<dt><em>Chunksize Lefter Product Matches Scalar Size Specified</em></dt>
-<dd><p>Definition: The product of the chunksizes for each variable
-(approximately) equals the size specified with the ‘<samp>--cnk_scl</samp>’
-option.
-This is accomplished by using dimension sizes as chunksizes for the
-rightmost (most rapidly varying) dimensions, and then “flexing” the
-chunksize of the leftmost (least rapidly varying) dimensions such that
-the product of all chunksizes matches the specified size.
-All dimensions to the left of and including the first record dimension
-define the left-hand side.
-This map was first proposed by Chris Barker.<br>
-<var>cnk_map</var> key values: ‘<samp>lfp</samp>’, ‘<samp>cnk_lfp</samp>’, ‘<samp>map_lfp</samp>’<br>
-Mnemonic: <em>L</em>e<em>F</em>ter <em>P</em>roduct<br>
-</p></dd>
-<dt><em>Chunksize Equals Existing Chunksize</em></dt>
-<dd><p>Definition: Chunksizes are copied from the input to the output
-file for every variable that is chunked in the input file.
-Variables not chunked in the input file will be chunked with
-default mappings.<br>
-<var>cnk_map</var> key values: ‘<samp>xst</samp>’, ‘<samp>cnk_xst</samp>’, ‘<samp>map_xst</samp>’<br>
-Mnemonic: E<em>X</em>i<em>ST</em><br>
-</p></dd>
-<dt><em>Chunksize Balances 1D and (N-1)-D Access to N-D Variable</em></dt>
-<dd><p>Definition: Chunksizes are chosen so that 1-D and (<var>(N-1)</var>)-D
-hyperslabs of <var>3</var>-D variables (e.g., point-timeseries orn
-latitude/longitude surfaces of 3-D fields) both require approximately
-the number of chunks.
-Hence their access time should be balanced.
-Russ Rew explains the motivation and derivation for this strategy
-<a href="http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes">here</a>.<br>
-<var>cnk_map</var> key values: ‘<samp>rew</samp>’, ‘<samp>cnk_rew</samp>’, ‘<samp>map_rew</samp>’<br>
-Mnemonic: Russ <em>REW</em><br>
-</p></dd>
-<dt><em>Chunksizes use netCDF4 defaults</em></dt>
-<dd><p>Definition: Chunksizes are determined by the underlying netCDF library.
-All variables selected by the current chunking policy have their
-chunksizes determined by netCDF library defaults.
-The default algorithm netCDF uses to determine chunksizes has changed
-through the years, and thus depends on the netCDF library version.
-This map can be used to reset (portions of) previously chunked files to
-default chunking values.<br>
-<var>cnk_map</var> key values: ‘<samp>nc4</samp>’, ‘<samp>cnk_nc4</samp>’, ‘<samp>map_nc4</samp>’<br>
-Mnemonic: <em>N</em>et<em>C</em>DF<em>4</em><br>
-</p></dd>
-<dt><em>Chunksizes use <acronym>NCO</acronym> recommendations</em></dt>
-<dd><p>Definition: Chunksizes are determined by the currently recommended
-<acronym>NCO</acronym> map.
-This is a virtual option that ensures the chunking map is (in the
-subjective opinion of the authors) the best map for typical usage.
-As of <acronym>NCO</acronym> version 4.4.8 (February, 2015), this virtual map
-calls ‘<samp>map_rew</samp>’ for 3-D variables and ‘<samp>map_lfp</samp>’ for all
-others.<br>
-<var>cnk_map</var> key values: ‘<samp>nco</samp>’, ‘<samp>cnk_nco</samp>’, ‘<samp>map_nco</samp>’<br>
-Mnemonic: <em>N</em>et<em>C</em>DF<em>O</em>perator<br>
-</p>
-</dd>
-</dl>
-<p>It is possible to combine the above chunking map algorithms with
-user-specified per-dimension (though not per-variable) chunksizes that
-override specific chunksizes determined by the maps above.
-The user specifies the per-dimension chunksizes with the (equivalent)
-long options ‘<samp>--cnk_dmn</samp>’ or ‘<samp>--chunk_dimension</samp>’).
-The option takes two comma-separated arguments,
-<var>dmn_nm</var>,<var>cnk_sz</var>, which are the dimension name and its
-chunksize, respectively.
-The ‘<samp>--cnk_dmn</samp>’ option may be used as many times as necessary.
-</p>
-<p>The default behavior of chunking depends on several factors.
-As mentioned above, when no chunking options are explicitly specified by
-the user, then <acronym>NCO</acronym> preserves the chunking characteristics of
-the input file in the output file.
-This is equivalent to specifying both <var>cnk_plc</var> and <var>cnk_map</var>
-as “existing”, i.e., ‘<samp>--cnk_plc=xst --cnk_map=xst</samp>’.
-If
-output netCDF4 files are chunked with the default behavior of the
-netCDF4 library.
-</p>
-<p>When any chunking parameter <em>except</em> ‘<samp>cnk_plc</samp>’ or
-‘<samp>cnk_map</samp>’ is specified (such as ‘<samp>cnk_dmn</samp>’ or
-‘<samp>cnk_sz_scl</samp>’), then the “existing” policy and map are
-retained and the output chunksizes are modified where necessary in
-accord with the user-specified parameter.
-When ‘<samp>cnk_map</samp>’ is specified and ‘<samp>cnk_plc</samp>’ is not, then
-<acronym>NCO</acronym> picks (what it thinks is) the optimal chunking policy.
-This has always been policy ‘<samp>map_g2d</samp>’.
-When ‘<samp>cnk_plc</samp>’ is specified and ‘<samp>cnk_map</samp>’ is not, then
-<acronym>NCO</acronym> picks (what it thinks is) the optimal chunking map.
-This has always been map ‘<samp>map_rd1</samp>’.
-</p>
-<p>To start afresh and return to netCDF4 chunking defaults, select
-‘<samp>cnk_map=nc4</samp>’.
-</p>
-<a name="xmp_cnk"></a> <!-- http://nco.sf.net/nco.html#xmp_cnk -->
-<a name="xmp_chunk"></a> <!-- http://nco.sf.net/nco.html#xmp_chunk --><div class="example">
-<pre class="example"># Simple chunking and unchunking
-ncks -O -4 --cnk_plc=all in.nc out.nc # Chunk in.nc
-ncks -O -4 --cnk_plc=unchunk in.nc out.nc # Unchunk in.nc
-
-# Chunk data then unchunk it, printing informative metadata
-ncks -O -4 -D 4 --cnk_plc=all ~/nco/data/in.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
-
-# Set total chunksize to 8192 B
-ncks -O -4 -D 4 --cnk_plc=all --cnk_byt=8192 ~/nco/data/in.nc ~/foo.nc
-
-# More complex chunking procedures, with informative metadata
-ncks -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_scl=8 dstmch90_clm.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_dmn lat,64 --cnk_dmn lon,128 dstmch90_clm.nc \
- ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-
-# Chunking works with all operators...
-ncap2 -O -4 -D 4 --cnk_scl=8 -S ~/nco/data/ncap2_tst.nco \
- ~/nco/data/in.nc ~/foo.nc
-ncbo -O -4 -D 4 --cnk_scl=8 -p ~/nco/data in.nc in.nc ~/foo.nc
-ncecat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
-ncflint -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
-ncpdq -O -4 -D 4 -P all_new --cnk_scl=8 -L 5 ~/nco/data/in.nc ~/foo.nc
-ncrcat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
-ncwa -O -4 -D 4 -a time --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-</pre></div>
-
-<a name="r1d"></a> <!-- http://nco.sf.net/nco.html#r1d --><p>Chunking policy ‘<samp>r1d</samp>’ changes the chunksize of 1-D record variables
-(and no other variables) to that specified (with ‘<samp>--cnk_dmn</samp>’)
-chunksize.
-Any specified record dimension chunksizes will be applied to 1-D
-record variables only.
-Other dimensions may be chunked with their own ‘<samp>--cnk_dmn</samp>’ options
-that will apply to all variables.
-For example,
-</p><div class="example">
-<pre class="example">ncks --cnk_plc=r1d --cnk_dmn=time,1000. in.nc out.nc
-</pre></div>
-<p>This sets <code>time</code> chunks to 1000 only in 1-D record variables.
-Without the ‘<samp>r1d</samp>’ policy, <code>time</code> chunks would change in all
-variables.
-</p>
-<a name="index-record-dimension-2"></a>
-<p>It is appropriate to conclude by informing users about an aspect of
-chunking that may not be expected.
-Three types of variables are <em>always</em> chunked: Record variables,
-Deflated (compressed) variables, and Checksummed variables.
-Hence all variables that contain a record dimension are also chunked
-(since data must be chunked in all dimensions, not just one).
-Unless otherwise specified by the user, the other (fixed, non-record)
-dimensions of record variables are assigned default chunk sizes.
-The <acronym>HDF5</acronym> layer does all this automatically to optimize the
-on-disk variable/file storage geometry of record variables.
-Do not be surprised to learn that files created without any explicit
-instructions to activate chunking nevertheless contain chunked
-variables.
-</p>
-<a name="ppc"></a> <!-- http://nco.sf.net/nco.html#ppc -->
-<a name="PPC"></a> <!-- http://nco.sf.net/nco.html#PPC -->
-<a name="compression"></a> <!-- http://nco.sf.net/nco.html#compression -->
-<a name="cmp"></a> <!-- http://nco.sf.net/nco.html#cmp -->
-<a name="nsd"></a> <!-- http://nco.sf.net/nco.html#nsd -->
-<a name="NSD"></a> <!-- http://nco.sf.net/nco.html#NSD -->
-<a name="dsd"></a> <!-- http://nco.sf.net/nco.html#dsd -->
-<a name="DSD"></a> <!-- http://nco.sf.net/nco.html#DSD -->
-<a name="qnt"></a> <!-- http://nco.sf.net/nco.html#qnt --><hr>
-<a name="Compression"></a>
-<div class="header">
-<p>
-Next: <a href="#Deflation" accesskey="n" rel="next">Deflation</a>, Previous: <a href="#Chunking" accesskey="p" rel="prev">Chunking</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Compression-1"></a>
-<h3 class="section">3.27 Compression</h3>
-<a name="index-_002d_002dppc"></a>
-<a name="index-_002d_002dprecision_005fpreserving_005fcompression"></a>
-<a name="index-_002d_002dquantize"></a>
-<a name="index-lossy-compression"></a>
-<a name="index-quantization"></a>
-<a name="index-rounding"></a>
-<a name="index-Huffman-coding"></a>
-<a name="index-gzip"></a>
-<a name="index-zlib"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>ncecat</code>, <code>nces</code>,
-<code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>, <code>ncra</code>,
-<code>ncrcat</code>, <code>ncwa</code><br>
-Short options: None<br>
-Long options: ‘<samp>--ppc <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>’,<br>
-‘<samp>--precision_preserving_compression <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>’,<br>
-‘<samp>--quantize <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>’<br>
-</p></td></tr></table>
-
-<p><acronym>NCO</acronym> implements or accesses four different compression
-algorithms, the standard lossless <acronym>DEFLATE</acronym> algorithm
-and three lossy compression algorithms.
-All four algorithms reduce the on-disk size of a dataset while
-sacrificing no (lossless) or a tolerable amount (lossy) of precision.
-First, <acronym>NCO</acronym> can access the lossless <acronym>DEFLATE</acronym> algorithm,
-a combination of Lempel-Ziv encoding and Huffman coding, algorithm on
-any netCDF4 dataset (see <a href="#Deflation">Deflation</a>).
-Because it is lossless, this algorithm re-inflates deflated data to
-their full original precision.
-This algorithm is accessed via the <acronym>HDF5</acronym> library layer
-(which itself calls the <code>zlib</code> library also used by
-<code>gzip</code>), and is unavailable with netCDF3.
-</p>
-<p>The three lossy compression algorithms are Packing
-(see <a href="#Packed-data">Packed data</a>), and two precision-preserving algorithms.
-Packing quantizes data of a higher precision type into a lower precision
-type (often <code>NC_SHORT</code>) that thus stores a fewer (though constant)
-number of bytes per value.
-Packed data almost unpacks into a (much) smaller dynamic range than
-the floating-point data can represent.
-The type-conversion and reduced dynamic range of the data allows packing
-to eliminate bits typically used to store an exponent, thus improving
-its packing efficiency.
-Packed data also can also be deflated for additional space savings.
-</p>
-<p>A limitation of packing is that unpacking data stored as integers
-into the linear range defined by <code>scale_factor</code> and
-<code>add_offset</code> rapidly loses precision outside of a narrow range of
-floating point values.
-Variables packed as <code>NC_SHORT</code>, for example, can represent only
-about 64000 discrete values in the range
-<em>-32768*scale_factor+add_offset</em> to
-<em>32767*scale_factor+add_offset</em>.
-The precision of packed data equals the value of <code>scale_factor</code>,
-and <code>scale_factor</code> is usually chosen to span the range of valid
-data, not to represent the intrinsic precision of the variable.
-In other words, the precision of packed data cannot be specified in
-advance because it depends on the range of values to quantize.
-</p>
-<a name="index-PPC"></a>
-<a name="index-LSD"></a>
-<a name="index-Least-Significant-Digit"></a>
-<a name="index-quantization-1"></a>
-<p><acronym>NCO</acronym> implemented the final two lossy compression algorithms
-in version 4.4.8 (February, 2015).
-These are both <em>Precision-Preserving Compression</em> (<acronym>PPC</acronym>)
-algorithms and since standard terminology for precision is remarkably
-imprecise, so is our nomenclature.
-The operational definition of “significant digit” in our precision
-preserving algorithms is that the exact value, before rounding or
-quantization, is within one-half the value of the decimal place occupied
-by the <em>Least Significant Digit</em> (<acronym>LSD</acronym>) of the rounded value.
-For example, the value <em>pi = 3.14</em> correctly represents the exact
-mathematical constant <var>pi</var> to three significant digits because the
-<acronym>LSD</acronym> of the rounded value (i.e., 4)<!-- /@w --> is in the one-hundredths
-digit place, and the difference between the exact value and the rounded
-value is less than one-half of one one-hundredth, i.e.,
-(<em>3.14159265358979323844 - 3.14 = 0.00159 < 0.005</em>).
-</p>
-<a name="index-Number-of-Significant-Digits"></a>
-<a name="index-NSD"></a>
-<p>One <acronym>PPC</acronym> algorithm preserves the specified total
-<em>Number of Signifcant Digits</em> (<acronym>NSD</acronym>) of the value.
-For example there is only one significant digit in the weight of
-most “eight-hundred pound gorillas” that you will encounter,
-i.e., so <em><var>nsd=1</var></em>.
-This is the most straightforward measure of precision, and thus
-<acronym>NSD</acronym> is the default <acronym>PPC</acronym> algorithm.
-</p>
-<a name="index-Decimal-Significant-Digits"></a>
-<a name="index-DSD"></a>
-<p>The other <acronym>PPC</acronym> algorithm preserves the number of
-<em>Decimal Significant Digits</em> (<acronym>DSD</acronym>), i.e., the number of
-significant digits following (positive, by convention) or preceding
-(negative) the decimal point.
-For example, “0.008” and “800” have, respectively, three and
-negative two digits digits following the decimal point, corresponding
-<em><var>dsd=3</var></em> and <em><var>dsd=-2</var></em>.
-</p>
-<p>The only justifiable <acronym>NSD</acronym> for a given value depends on
-intrinsic accuracy and error characteristics of the model or
-measurements, and not on the units with which the value is stored.
-The appropriate <acronym>DSD</acronym> for a given value depends on these
-intrinsic characteristics and, in addition, the units of storage.
-This is the fundamental difference between the <acronym>NSD</acronym> and
-<acronym>DSD</acronym> approaches.
-The eight-hundred pound gorilla always has <em><var>nsd=1</var></em> regardless
-of whether the value is store in pounds or in some other unit.
-<acronym>DSD</acronym> corresponding to this weight is <em><var>dsd=-2</var></em> if the
-value is store in pounds, <em><var>dsd=4</var></em> if stored in megapounds.
-</p>
-<p>Users may wish to express the precision to be preserved as either
-<acronym>NSD</acronym> or <acronym>DSD</acronym>.
-Invoke <acronym>PPC</acronym> with the long option ‘<samp>--ppc var=prc</samp>’, or give
-the same arguments to the synonyms
-‘<samp>--precision_preserving_compression</samp>’, or to ‘<samp>--quantize</samp>’.
-Here <var>var</var> is the variable to quantize, and <var>prc</var> is the
-precision.
-The default algorithm assumes <var>prc</var> specifies <acronym>NSD</acronym>
-precision, e.g., ‘<samp>T=2</samp>’ means <em><var>nsd=2</var></em>.
-Prepend <var>prc</var> with a decimal point to specify <acronym>DSD</acronym>
-precision, e.g., ‘<samp>T=.2</samp>’ means <em><var>dsd=2</var></em>.
-<acronym>NSD</acronym> precision must be specified as a positive integer.
-<acronym>DSD</acronym> precision may be a positive or negative integer;
-and is specified as the negative base 10<!-- /@w --> logarithm of the desired
-precision, in accord with common usage.
-For example, specifying ‘<samp>T=.3</samp>’ or ‘<samp>T=.-2</samp>’ tells the
-<acronym>DSD</acronym> algorithm to store only enough bits to preserve the
-value of <var>T</var> rounded to the nearest thousandth or hundred,
-respectively.
-</p>
-<a name="index-CF-conventions-3"></a>
-<a name="index-coordinates-attribute"></a>
-<a name="index-bounds-attribute"></a>
-<p>Setting <var>var</var> to <code>default</code> has the special meaning of applying
-the associated <acronym>NSD</acronym> or <acronym>DSD</acronym> algorithm to all floating
-point variables except coordinate variables.
-Variables <em>not affected</em> by <code>default</code> include integer and
-non-numeric atomic types, coordinates, and variables mentioned in
-the <code>coordinates</code> or <code>bounds</code> attribute of any variable.
-<acronym>NCO</acronym> applies <acronym>PPC</acronym> to coordinate variables only if
-those variables are explicitly specified (i.e., not with the
-‘<samp>default=<var>prc</var></samp>’ mechanism.
-<acronym>NCO</acronym> applies <acronym>PPC</acronym> to integer-type variables only if
-those variables are explicitly specified (i.e., not with the
-‘<samp>default=<var>prc</var></samp>’, and only if the <acronym>DSD</acronym> algorithm is
-invoked with a negative <var>prc</var>.
-To prevent <acronym>PPC</acronym> from applying to certain non-coordinate
-variables (e.g., <code>gridcell_area</code> or <code>gaussian_weight</code>),
-explicitly specify a precision exceeding 7<!-- /@w --> (for <code>NC_FLOAT</code>)
-or 15<!-- /@w --> (for <code>NC_DOUBLE</code>) for those variables.
-Since these are the maximum representable precisions in decimal digits,
-<acronym>NCO</acronym> <em>turns-off</em> <acronym>PPC</acronym> (i.e., does nothing)
-when more precision is requested.
-</p>
-<a name="index-bitmask"></a>
-<a name="index-significand"></a>
-<a name="index-IEEE-754"></a>
-<p>The time penalty for compressing and uncompressing data varies according
-to the algorithm.
-The Number of Significant Digit (<acronym>NSD</acronym>) algorithm quantizes by
-bitmasking, and employs no floating point math.
-The Decimal Significant Digit (<acronym>DSD</acronym>) algorithm quantizes by
-rounding, which does require floating point math.
-Hence <acronym>NSD</acronym> is likely faster than <acronym>DSD</acronym>, though
-the difference has not been measured.
-<acronym>NSD</acronym> creates a bitmask to alter the <em>significand</em> of
-<acronym>IEEE</acronym> 754<!-- /@w --> floating point data.
-The bitmask is one for all bits to be retained and zero or one for all
-bits to be ignored.
-The algorithm assumes that the number of binary digits (i.e., bits)
-necessary to represent a single base-10 digit is
-<em>ln(10)/ln(2) = 3.32</em>.
-The exact numbers of bits <var>Nbit</var> retained for single and double
-precision values are <em>ceil(3.32*<var>nsd</var>)+1</em> and
-<em>ceil(3.32*<var>nsd</var>)+2</em>, respectively.
-Once these reach 23<!-- /@w --> and 53<!-- /@w -->, respectively, bitmasking is
-completely ineffective.
-This occurs at <em><var>nsd</var>=6.3</em> and 15.4<!-- /@w -->, respectively.
-</p>
-<p>The <acronym>DSD</acronym> algorithm, by contrast, uses rounding to remove
-undesired precision.
-<a name="index-rint_0028_0029"></a>
-<a name="index-C99-3"></a>
-<a name="index-IEEE"></a>
-<a name="index-significand-1"></a>
-The rounding
-<a name="DOCF38" href="#FOOT38"><sup>38</sup></a>
-zeroes the greatest number of significand bits consistent with
-the desired precision.
-</p>
-<p>To demonstrate the change in <acronym>IEEE</acronym> representation caused by
-<acronym>PPC</acronym> rounding algorithms, consider again the case of <var>pi</var>,
-represented as an <code>NC_FLOAT</code>.
-The <acronym>IEEE</acronym> 754<!-- /@w --> single precision representations of the exact
-value (3.141592...), the value with only three significant digits treated
-as exact (3.140000...), and the value as stored (3.140625) after
-<acronym>PPC</acronym>-rounding with either the <acronym>NSD</acronym> (<em><var>prc</var>=3</em>)
-or <acronym>DSD</acronym> (<em><var>prc</var>=2</em>) algorithm are, respectively,
-</p><div class="example">
-<pre class="example">S Exponent Fraction (Significand) Decimal Notes
-0 100000001 0010010000111111011011 # 3.14159265 Exact
-0 100000001 0010001111010111000011 # 3.14000000
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
-0 100000001 0010010000000000000000 # 3.14062500 DSD = 2
-</pre></div>
-<p>The string of trailing zero-bits in the rounded values facilitates
-byte-stream compression.
-Note that the <acronym>NSD</acronym> and <acronym>DSD</acronym> algorithms do not always
-produce results that are bit-for-bit identical, although they do in this
-particular case.
-</p>
-<a name="ppc_tbl_bit"></a> <!-- http://nco.sf.net/nco.html#ppc_tbl_bit --><p>Reducing the preserved precision of <acronym>NSD</acronym>-rounding produces
-increasingly long strings of identical-bits amenable to compression:
-</p><div class="example">
-<pre class="example">S Exponent Fraction (Significand) Decimal Notes
-0 100000001 0010010000111111011011 # 3.14159265 Exact
-0 100000001 0010010000111111011011 # 3.14159265 NSD = 8
-0 100000001 0010010000111111011010 # 3.14159262 NSD = 7
-0 100000001 0010010000111111011000 # 3.14159203 NSD = 6
-0 100000001 0010010000111111000000 # 3.14158630 NSD = 5
-0 100000001 0010010000111100000000 # 3.14154053 NSD = 4
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 2
-0 100000001 0010000000000000000000 # 3.12500000 NSD = 1
-</pre></div>
-<p>The consumption of about 3 bits<!-- /@w --> per digit of base-10 precision is
-evident, as is the coincidence of a quantized value that greatly
-exceeds the mandated precision for <em><acronym>NSD</acronym> = 2</em>.
-Although the <acronym>NSD</acronym> algorithm generally masks some bits for all
-<em><var>nsd</var> <= 7</em> (for <code>NC_FLOAT</code>), compression algorithms like
-<acronym>DEFLATE</acronym> may need byte-size-or-greater (i.e., at least
-eight-bit) bit patterns before their algorithms can take advantage of
-of encoding such patterns for compression.
-Do not expect significantly enhanced compression from
-<em><var>nsd</var> > 5</em> (for <code>NC_FLOAT</code>) or <em><var>nsd</var> > 14</em> (for
-<code>NC_DOUBLE</code>).
-Clearly values stored as <code>NC_DOUBLE</code> (i.e., eight-bytes) are
-susceptible to much greater compression than <code>NC_FLOAT</code> for a given
-precision because their significands explicitly contain 53 bits<!-- /@w -->
-rather than 23 bits<!-- /@w -->.
-</p>
-<p>Maintaining non-biased statistical properties during lossy compression
-requires special attention.
-The <acronym>DSD</acronym> algorithm uses <code>rint()</code>, which rounds toward the
-nearest even integer.
-Thus <acronym>DSD</acronym> has no systematic bias.
-However, the <acronym>NSD</acronym> algorithm uses a bitmask technique
-susceptible to statistical bias.
-Zeroing all non-significant bits is guaranteed to produce numbers
-quantized to the specified tolerance, i.e., half of the decimal value
-of the position occupied by the <acronym>LSD</acronym>.
-However, always zeroing the non-significant bits results in quantized
-numbers that never exceed the exact number.
-This would produce a negative bias in statistical quantities (e.g., the
-average) subsequently derived from the quantized numbers.
-To avoid this bias, <acronym>NSD</acronym> rounds non-significant bits down (to
-zero) or up (to one) in an alternating fashion when processing array
-data.
-In general, the first element is rounded down, the second up, and so
-on.
-This results in a mean bias quite close to zero.
-The only exception is that the floating point value of zero is never
-quantized upwards.
-For simplicity, <acronym>NSD</acronym> always rounds scalars downwards.
-</p>
-<a name="index-DEFLATE"></a>
-<a name="index-HDF5-2"></a>
-<a name="index-gzip-1"></a>
-<a name="index-gunzip"></a>
-<p>Although <acronym>NSD</acronym> or <acronym>DSD</acronym> are different algorithms under
-the hood, they both replace the (unwanted) least siginificant bits of
-the <acronym>IEEE</acronym> significand with a string of consecutive zeroes.
-Byte-stream compression techniques, such as the <code>gzip</code>
-<acronym>DEFLATE</acronym> algorithm compression available in <acronym>HDF5</acronym>,
-always compress zero-strings more efficiently than random digits.
-The net result is netCDF files that utilize compression can be
-significantly reduced in size.
-This feature only works when the data are compressed, either internally
-(by netCDF) or externally (by another user-supplied mechanism).
-It is most straightfoward to compress data internally using the built-in
-compression and decompression supported by netCDF4.
-For convenience, <acronym>NCO</acronym> automatically activates file-wide
-Lempel-Ziv deflation (see <a href="#Deflation">Deflation</a>) level one (i.e., ‘<samp>-L 1</samp>’)
-when <acronym>PPC</acronym> is invoked on any variable in a netCDF4 output file.
-This makes <acronym>PPC</acronym> easier to use effectively, since the user
-need not explicitly specify deflation.
-Any explicitly specified deflation (including no deflation, ‘<samp>-L 0</samp>’)
-will override the <acronym>PPC</acronym> deflation default.
-If the output file is a netCDF3 format, <acronym>NCO</acronym> will emit a
-message suggesting internal netCDF4 or external netCDF3 compression.
-netCDF3 files compressed by an external utility such as <code>gzip</code>
-accrue approximately the same benefits (shrinkage) as netCDF4, although
-with netCDF3 the user or provider must uncompress (e.g.,
-<code>gunzip</code>) the file before accessing the data.
-There is no benefit to rounding numbers and storing them in netCDF3
-files unless such custom compression/decompression is employed.
-Without that, one may as well maintain the undesired precision.
-</p>
-<p>The user accesses <acronym>PPC</acronym> through a single switch, ‘<samp>--ppc</samp>’,
-repeated as many times as necessary.
-To apply the <acronym>NSD</acronym> algorithm to variable <var>u</var> use, e.g.,
-</p><div class="example">
-<pre class="example">ncks -7 --ppc u=2 in.nc out.nc
-</pre></div>
-<p>The output file will preserve only two significant digits of <var>u</var>.
-The options ‘<samp>-4</samp>’ or ‘<samp>-7</samp>’ ensure a netCDF4-format output
-(regardless of the input file format) to support internal compression.
-It is recommended though not required to write netCDF4 files after
-<acronym>PPC</acronym>.
-For clarity the ‘<samp>-4/-7</samp>’ switches are omitted in subsequent
-examples.
-<a name="index-number_005fof_005fsignificant_005fdigits"></a>
-<a name="index-least_005fsignificant_005fdigit"></a>
-<acronym>NCO</acronym> attaches attributes that indicate the algorithm used and
-degree of precision retained for each variable affected by
-<acronym>PPC</acronym>.
-The <acronym>NSD</acronym> and <acronym>DSD</acronym> algorithms store the attributes
-<code>number_of_significant_digits</code> and <code>least_significant_digit</code>
-<a name="DOCF39" href="#FOOT39"><sup>39</sup></a>, respectively.
-</p>
-<p>It is safe to attempt <acronym>PPC</acronym> on input that has already been
-rounded.
-Variables can be made rounder, not sharper, i.e., variables cannot be
-“un-rounded”.
-Thus <acronym>PPC</acronym> attempted on an input variable with an existing
-<acronym>PPC</acronym> attribute proceeds only if the new rounding level exceeds
-the old, otherwise no new rounding occurs (i.e., a “no-op”), and the
-original <acronym>PPC</acronym> attribute is retained rather than replaced with
-the newer value of <var>prc</var>.
-</p>
-<p>To request, say, five significant digits (<em><var>nsd=5</var></em>) for all
-fields, except, say, wind speeds which are only known to integer values
-(<em><var>dsd=0</var></em>) in the supplied units, requires ‘<samp>--ppc</samp>’ twice:
-</p><div class="example">
-<pre class="example">ncks -4 --ppc default=5 --ppc u,v=.0 in.nc out.nc
-</pre></div>
-<p>To preserve five digits in all variables except coordinate variables
-and <var>u</var> and <var>v</var>, use the ‘<samp>default</samp>’ option and separately
-specify the exceptions:
-</p><div class="example">
-<pre class="example">ncks --ppc default=5 --ppc u,v=20 in.nc out.nc
-</pre></div>
-<p>The ‘<samp>--ppc</samp>’ option may be specified any number of times to
-support varying precision types and levels, and each option may
-aggregate all the variables with the same precision
-</p><div class="example">
-<pre class="example">ncks --ppc p,w,z=5 --ppc q,RH=4 --ppc T,u,v=3 in.nc out.nc
-</pre></div>
-<p>Any <var>var</var> argument may be a regular expression.
-This simplifies generating lists of related variables:
-</p><div class="example">
-<pre class="example">ncks --ppc Q.?=5 --ppc FS.?,FL.?=4 --ppc RH=.3 in.nc out.nc
-</pre></div>
-<p>Although <acronym>PPC</acronym>-rounding instantly reduces data precision,
-on-disk storage reduction only occurs once the data are compressed.
-</p>
-<a name="ppc_tbl_ffc"></a> <!-- http://nco.sf.net/nco.html#ppc_tbl_ffc --><p>How can one be sure the lossy data are sufficiently precise?
-<acronym>PPC</acronym> preserves all significant digits of every value.
-The <acronym>DSD</acronym> algorithm uses floating point math to round each
-value optimally so that it has the maximum number of zeroed bits
-that preserve the specified precision.
-The <acronym>NSD</acronym> algorithm uses a theoretical approach (3.2 bits per
-base-10 digit), tuned and tested to ensure the <em>worst</em> case
-quantization error is less than half the value of the minimum increment
-in the least significant digit.
-</p>
-<table class="cartouche" border="1"><tr><td>
-<p><b>Note for HTML users</b>:
-<br>The definition of error metrics relies heavily on mathematical
-expressions which cannot easily be represented in HTML.
-<b>See the <a href="./nco.pdf">printed manual</a> for much more detailed
-and complete documentation of this subject.</b></td></tr></table>
-
-
-<p>All three metrics are expressed in terms of the fraction of the ten’s
-place occupied by the <acronym>LSD</acronym>.
-If the <acronym>LSD</acronym> is the hundreds digit or the thousandths digit,
-then the metrics are fractions of 100<!-- /@w -->, or of 1/100<!-- /@w -->,
-respectively.
-<acronym>PPC</acronym> algorithms should produce maximum absolute errors no
-greater than 0.5<!-- /@w --> in these units.
-If the <acronym>LSD</acronym> is the hundreds digit, then quantized versions of
-true values will be within fifty of the true value.
-It is much easier to satisfy this tolerance for a true value
-of 100<!-- /@w --> (only 50% accuracy required) than for 999<!-- /@w -->
-(5% accuracy<!-- /@w --> required).
-Thus the minimum accuracy guaranteed for <em><var>nsd</var>=1</em> ranges
-from 5–50%.
-For this reason, the best and worst cast performance usually occurs for
-true values whose <acronym>LSD</acronym> value is close to one and nine,
-respectively.
-Of course most users prefer <em><var>prc</var> > 1</em> because accuracies
-increase exponentially with <var>prc</var>.
-Continuing the previous example to <em><var>prc</var>=2</em>,
-quantized versions of true values from 1000–9999 will also be
-within 50<!-- /@w --> of the true value, i.e., have accuracies from 0.5–5%.
-In other words, only two significant digits are necessary to guarantee
-better than 5%<!-- /@w --> accuracy in quantization.
-We recommend that dataset producers and users consider quantizing
-datasets with <em><var>nsd</var>=3</em>.
-This guarantees accuracy of 0.05–0.5% for individual values.
-Statistics computed from ensembles of quantized values will, assuming
-the mean error
-<em><var>Emean</var></em>
-is small, have much better accuracy than 0.5%<!-- /@w -->.
-This accuracy is the most that can be justified for many applications.
-</p>
-<p>To demonstrate these principles we conduct error analyses on an
-artificial, reproducible dataset, and on an actual dataset of
-observational analysis values.
-<a name="DOCF40" href="#FOOT40"><sup>40</sup></a>
-The table summarizes quantization accuracy based on the three metrics.
-</p><dl compact="compact">
-<dt><code>NSD</code></dt>
-<dd><p>Number of Significant Digits.
-</p></dd>
-<dt><code>Emabs</code></dt>
-<dd><p>Maximum absolute error.
-</p></dd>
-<dt><code>Emebs</code></dt>
-<dd><p>Mean absolute error.
-</p></dd>
-<dt><code>Emean</code></dt>
-<dd><p>Mean error.
-</p></dd>
-</dl>
-
-<div class="example">
-<pre class="example">Artificial Data: N=1000000 values in [1.0,2.0) in steps of 1.0e-6
-Single-Precision Double-Precision Single-Precision
-NSD Emabs Emebs Emean Emabs Emebs Emean DSD Emabs Emebs Emean
- 1 0.31 0.11 4.1e-4 0.31 0.11 4.0e-4 1 0.30 0.11 -8.1e-4
- 2 0.39 0.14 6.8e-5 0.39 0.14 5.5e-5 2 0.39 0.14 -1.3e-4
- 3 0.49 0.17 1.0e-6 0.49 0.17 -5.5e-7 3 0.49 0.17 -2.0e-5
- 4 0.30 0.11 3.2e-7 0.30 0.11 -6.1e-6 4 0.30 0.11 5.1e-8
- 5 0.37 0.13 3.1e-7 0.38 0.13 -5.6e-6 5 0.38 0.13 2.6e-6
- 6 0.36 0.12 -4.4e-7 0.48 0.17 -4.1e-7 6 0.48 0.17 7.2e-6
- 7 0.00 0.00 0.0 0.30 0.10 1.5e-7 7 0.00 0.00 0.0
-
-Observational Analysis: N=13934592 values MERRA Temperature 20130601
-Single-Precision
-NSD Emabs Emebs Emean
- 1 0.31 0.11 2.4e-3
- 2 0.39 0.14 3.8e-4
- 3 0.49 0.17 -9.6e-5
- 4 0.30 0.11 2.3e-3
- 5 0.37 0.13 2.2e-3
- 6 0.36 0.13 1.7e-2
- 7 0.00 0.00 0.0
-</pre></div>
-<p>All results show that <acronym>PPC</acronym> quantization performs as expected.
-Absolute maximum errors <em><var>Emabs</var> < 0.5</em> for all <var>prc</var>.
-For <em>1 <= <var>prc</var> <= 6</em>, quantization results in comparable
-maximum absolute and mean absolute errors <var>Emabs</var> and <var>Emebs</var>,
-respectively.
-Mean errors <var>Emean</var> are orders of magnitude smaller because
-quantization produces over- and under-estimated values in balance.
-When <em><var>prc</var>=7</em>, quantization of single-precision values is
-ineffective, because all available bits are used to represent the
-maximum precision of seven digits.
-The maximum and mean absolute errors <var>Emabs</var> and <var>Emebs</var> are
-nearly identical across algorithms, precisions, and dataset types.
-This is consistent with both the artificial data and empirical data
-being random, and thus exercising equally strengths and weaknesses of
-the algorithms over the course of millions of input values.
-We generated artificial arrays with many different starting values
-and interval spacing and all gave qualitatively similar results.
-The results presented are the worst obtained.
-</p>
-<p>The artificial data has much smaller mean error <var>Emean</var> than the
-observational analysis.
-The reason why is unclear.
-It may be because the temperature field is concentrated in particular
-ranges of values (and associated quantization errors) prevalent on
-Earth, e.g., <em>200 < <var>T</var> < 320</em>.
-It is worth noting that the mean error <em><var>Emean</var> < 0.01</em> for
-<em>1 <= <var>prc</var> < 6</em>, and that <var>Emean</var> is typically at least
-two or more orders of magnitude less than <var>Emabs</var>.
-Thus quantized values with precisions as low as <em><var>prc</var>=1</em>
-still yield highly significant statistics by contemporary scientific
-standards.
-</p>
-<p>Testing shows that <acronym>PPC</acronym> quantization enhances compression of
-typical climate datasets.
-The degree of enhancement depends, of course, on the required
-precision.
-Model results are often computed as <code>NC_DOUBLE</code> then archived
-as <code>NC_FLOAT</code> to save space.
-<a name="ppc_tbl_nc"></a> <!-- http://nco.sf.net/nco.html#ppc_tbl_nc --><a name="index-Burrows_002dWheeler-algorithm"></a>
-<a name="index-bzip2"></a>
-This table summarizes the performance of lossless and lossy compression
-on two typical, or at least random, netCDF data files.
-The files were taken from representative model-simulated and
-satellite-retrieved datasets.
-Only floating point data were compressed.
-No attempt was made to compress integer-type variables as they occupy an
-insignificant fraction of every dataset.
-The columns are
-</p><dl compact="compact">
-<dt><code>Type</code></dt>
-<dd><p>File-type:
-<kbd>N3</kbd> for netCDF <code>CLASSIC</code>,
-<kbd>N4</kbd> for <code>NETCDF4</code>),
-<kbd>N7</kbd> for <code>NETCDF4_CLASSIC</code> (which comprises netCDF3
-data types and structures with netCDF4 storage features like
-compression),
-<kbd>H4</kbd> for <acronym>HDF4</acronym>, and
-<kbd>H5</kbd> for <acronym>HDF5</acronym>.
-<kbd>N4/7</kbd> means results apply to both <kbd>N4</kbd> and <kbd>N7</kbd> filetypes.
-</p></dd>
-<dt><code>LLC</code></dt>
-<dd><p>Type of lossless compression employed, if any.
-Bare numbers refer to the strength of the <acronym>DEFLATE</acronym> algorithm
-employed internally by netCDF4/<acronym>HDF5</acronym>, while numbers prefixed
-with <kbd>B</kbd> refer to the block size employed by the Burrows-Wheeler
-algorithm in <code>bzip2</code>.
-</p></dd>
-<dt><code>PPC</code></dt>
-<dd><p>Number of significant digits retained by the precision-preserving
-compression <acronym>NSD</acronym> algorithm.
-</p></dd>
-<dt><code>Pck</code></dt>
-<dd><p><kbd>Y</kbd> if the default <code>ncpdq</code> packing algorithm (convert
-floating point types to <code>NC_SHORT</code>) was employed.
-A dash (<kbd>-</kbd>) indicates the associated compression feature
-was not employed.
-</p></dd>
-<dt><code>Size</code></dt>
-<dd><p>Resulting filesize in <acronym>MB</acronym>.
-</p></dd>
-<dt><code>%</code></dt>
-<dd><p>Compression ratio, i.e., resulting filesize relative to original size,
-in percent.
-In some cases the original files is already losslessly compressed.
-The compression ratios reported are relative to the size of the original
-file as distributed, not as optimally losslessly compressed.
-</p></dd>
-</dl>
-<div class="example">
-<pre class="example"># dstmch90_clm.nc
-Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 34.7 100.0 Original is not compressed
- N3 B1 - - 28.9 83.2 bzip2 -1
- N3 B9 - - 29.3 84.4 bzip2 -9
- N7 - - - 35.0 101.0
- N7 1 - - 28.2 81.3 -L 1
- N7 9 - - 28.0 80.8 -L 9
- N7 - - Y 17.6 50.9 ncpdq -L 0
- N7 1 - Y 7.9 22.8 ncpdq -L 1
- N7 1 7 - 28.2 81.3 --ppc default=7
- N7 1 6 - 27.9 80.6 --ppc default=6
- N7 1 5 - 25.9 74.6 --ppc default=5
- N7 1 4 - 22.3 64.3 --ppc default=4
- N7 1 3 - 18.9 54.6 --ppc default=3
- N7 1 2 - 14.5 43.2 --ppc default=2
- N7 1 1 - 10.0 29.0 --ppc default=1
-
-# b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
-Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 119.8 100.0 Original is not compressed
- N3 B1 - - 84.2 70.3 bzip2 -1
- N3 B9 - - 84.8 70.9 bzip2 -9
- N7 - - - 120.5 100.7
- N7 1 - - 82.6 69.0 -L 1
- N7 9 - - 82.1 68.6 -L 9
- N7 - - Y 60.7 50.7 ncpdq -L 0
- N7 1 - Y 26.0 21.8 ncpdq -L 1
- N7 1 7 - 82.6 69.0 --ppc default=7
- N7 1 6 - 81.9 68.4 --ppc default=6
- N7 1 5 - 77.2 64.5 --ppc default=5
- N7 1 4 - 69.0 57.6 --ppc default=4
- N7 1 3 - 59.3 49.5 --ppc default=3
- N7 1 2 - 49.5 41.3 --ppc default=2
- N7 1 1 - 38.2 31.9 --ppc default=1
-
-# MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.hdf
-Type LLC PPC Pck Size % Flags and Notes
- H4 5 - - 244.3 100.0 Original is compressed
- H4 B1 - - 244.7 100.1 bzip2 -1
- N4 5 - - 214.5 87.8
- N7 5 - - 210.6 86.2
- N4 B1 - - 215.4 88.2 bzip2 -1
- N4 B9 - - 214.8 87.9 bzip2 -9
- N3 - - - 617.1 252.6
-N4/7 - - - 694.0 284.0 -L 0
-N4/7 1 - - 223.2 91.3 -L 1
-N4/7 9 - - 207.3 84.9 -L 9
-N4/7 - - Y 347.1 142.1 ncpdq -L 0
-N4/7 1 - Y 133.6 54.7 ncpdq -L 1
-N4/7 1 7 - 223.1 91.3 --ppc default=7
-N4/7 1 6 - 225.1 92.1 --ppc default=6
-N4/7 1 5 - 221.4 90.6 --ppc default=5
-N4/7 1 4 - 201.4 82.4 --ppc default=4
-N4/7 1 3 - 185.3 75.9 --ppc default=3
-N4/7 1 2 - 150.0 61.4 --ppc default=2
-N4/7 1 1 - 100.8 41.3 --ppc default=1
-
-# OMI-Aura_L2-OMIAuraSO2_2012m1222-o44888_v01-00-2014m0107t114720.h5
-Type LLC PPC Pck Size % Flags and Notes
- H5 5 - - 29.5 100.0 Original is compressed
- H5 B1 - - 29.3 99.6 bzip2 -1
- N4 5 - - 29.5 100.0
- N4 B1 - - 29.3 99.6 bzip2 -1
- N4 B9 - - 29.3 99.4 bzip2 -9
- N4 - - - 50.7 172.3 -L 0
- N4 1 - - 29.8 101.3 -L 1
- N4 9 - - 29.4 99.8 -L 9
- N4 - - Y 27.7 94.0 ncpdq -L 0
- N4 1 - Y 12.9 43.9 ncpdq -L 1
- N4 1 7 - 29.7 100.7 --ppc default=7
- N4 1 6 - 29.7 100.8 --ppc default=6
- N4 1 5 - 27.3 92.8 --ppc default=5
- N4 1 4 - 23.8 80.7 --ppc default=4
- N4 1 3 - 20.3 69.0 --ppc default=3
- N4 1 2 - 15.1 51.2 --ppc default=2
- N4 1 1 - 9.9 33.6 --ppc default=1
-</pre></div>
-
-<a name="index-NCAR-1"></a>
-<a name="index-CAM"></a>
-<a name="index-GCM-1"></a>
-<p>A selective, per-variable approach to <acronym>PPC</acronym> yields the
-best balance of precision and compression yet requires the dataset
-producer to understand the intrinsic precision of each variable.
-Such a specification for a <acronym>GCM</acronym> dataset might look like this
-(using names for the <acronym>NCAR</acronym> <acronym>CAM</acronym> model):
-</p><div class="example">
-<pre class="example"># Be conservative on non-explicit quantities, so default=5
-# Some quantities deserve four significant digits
-# Many quantities, such as aerosol optical depths and burdens, are
-# highly uncertain and only useful to three significant digits.
-ncks -7 -O \
---ppc default=5 \
---ppc AN.?,AQ.?=4 \
---ppc AER.?,AOD.?,ARE.?,AW.?,BURDEN.?=3 \
-ncar_cam.nc ~/foo.nc
-</pre></div>
-
-<a name="dfl_lvl"></a> <!-- http://nco.sf.net/nco.html#dfl_lvl -->
-<a name="dfl"></a> <!-- http://nco.sf.net/nco.html#dfl -->
-<a name="lz"></a> <!-- http://nco.sf.net/nco.html#lz -->
-<a name="lz77"></a> <!-- http://nco.sf.net/nco.html#lz77 -->
-<a name="deflate"></a> <!-- http://nco.sf.net/nco.html#deflate -->
-<a name="deflation"></a> <!-- http://nco.sf.net/nco.html#deflation --><hr>
-<a name="Deflation"></a>
-<div class="header">
-<p>
-Next: <a href="#MD5-digests" accesskey="n" rel="next">MD5 digests</a>, Previous: <a href="#Compression" accesskey="p" rel="prev">Compression</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Deflation-1"></a>
-<h3 class="section">3.28 Deflation</h3>
-<a name="index-_002dL"></a>
-<a name="index-_002d_002ddeflate"></a>
-<a name="index-_002d_002ddfl_005flvl"></a>
-<a name="index-Lempel_002dZiv-deflation"></a>
-<a name="index-compression"></a>
-<a name="index-deflation-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncecat</code>, <code>ncflint</code>, <code>ncks</code>, <code>ncpdq</code>,
-<code>ncra</code>, <code>ncrcat</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-L</samp>’<br>
-Long options: ‘<samp>--dfl_lvl</samp>’, ‘<samp>--deflate</samp>’<br>
-</p></td></tr></table>
-
-<p>All <acronym>NCO</acronym> operators that define variables support the netCDF4
-feature of storing variables compressed with the lossless
-<acronym>DEFLATE</acronym> compression algorithm.
-<acronym>DEFLATE</acronym> combines the Lempel-Ziv encoding with Huffman coding.
-The specific version used by netCDF4/<acronym>HDF5</acronym> is that implemented
-in the <code>zlib</code> library used by <code>gzip</code>.
-Activate deflation with the <code>-L <var>dfl_lvl</var></code> short option (or
-with the same argument to the ‘<samp>--dfl_lvl</samp>’ or ‘<samp>--deflate</samp>’ long
-options).
-Specify the deflation level <var>dfl_lvl</var> on a scale from no deflation
-(<var>dfl_lvl = 0</var>) to maximum deflation (<var>dfl_lvl = 9</var>).
-Under the hood, this selects the compression blocksize.
-Minimal deflation (<var>dfl_lvl = 1</var>) achieves considerable storage
-compression with little time penalty.
-Higher deflation levels require more time for compression.
-File sizes resulting from minimal (<var>dfl_lvl = 1</var>) and maximal
-(<var>dfl_lvl = 9</var>) deflation levels typically differ by less
-than 10%<!-- /@w --> in size.
-</p>
-<p>To compress an entire file using deflation, use
-</p><div class="example">
-<pre class="example">ncks -4 -L 0 in.nc out.nc # No deflation (fast, no time penalty)
-ncks -4 -L 1 in.nc out.nc # Minimal deflation (little time penalty)
-ncks -4 -L 9 in.nc out.nc # Maximal deflation (much slower)
-</pre></div>
-
-<p>Unscientific testing shows that deflation compresses typical climate
-datasets by 30-60%.
-Packing, a lossy compression technique available for all netCDF files
-(see <a href="#Packed-data">Packed data</a>), can easily compress files by 50%.
-Packed data may be deflated to squeeze datasets by about 80%:
-</p><div class="example">
-<pre class="example">ncks -4 -L 1 in.nc out.nc # Minimal deflation (~30-60% compression)
-ncks -4 -L 9 in.nc out.nc # Maximal deflation (~31-63% compression)
-ncpdq in.nc out.nc # Standard packing (~50% compression)
-ncpdq -4 -L 9 in.nc out.nc # Deflated packing (~80% compression)
-</pre></div>
-<a name="index-ncks-1"></a>
-<p><code>ncks</code> prints deflation parameters, if any, to screen
-(see <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>).
-</p>
-<a name="md5"></a> <!-- http://nco.sf.net/nco.html#md5 -->
-<a name="digest"></a> <!-- http://nco.sf.net/nco.html#digest -->
-<a name="hash"></a> <!-- http://nco.sf.net/nco.html#hash -->
-<a name="integrity"></a> <!-- http://nco.sf.net/nco.html#integrity -->
-<a name="security"></a> <!-- http://nco.sf.net/nco.html#security --><hr>
-<a name="MD5-digests"></a>
-<div class="header">
-<p>
-Next: <a href="#Buffer-sizes" accesskey="n" rel="next">Buffer sizes</a>, Previous: <a href="#Deflation" accesskey="p" rel="prev">Deflation</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="MD5-digests-1"></a>
-<h3 class="section">3.29 MD5 digests</h3>
-<a name="index-_002d_002dmd5_005fdigest"></a>
-<a name="index-_002d_002dmd5_005fdgs"></a>
-<a name="index-_002d_002dmd5_005fwrt_005fatt"></a>
-<a name="index-_002d_002dmd5_005fwrite_005fattribute"></a>
-<a name="index-integrity"></a>
-<a name="index-security"></a>
-<a name="index-digest"></a>
-<a name="index-hash"></a>
-<a name="index-MD5-digest"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability:
-<code>ncecat</code>, <code>ncks</code>, <code>ncrcat</code><br>
-Short options: <br>
-Long options: ‘<samp>--md5_dgs</samp>’, ‘<samp>--md5_digest</samp>’, ‘<samp>--md5_wrt_att</samp>’, ‘<samp>--md5_write_attribute</samp>’<br>
-</p></td></tr></table>
-
-<p>As of <acronym>NCO</acronym> version 4.1.0 (April, 2012), <acronym>NCO</acronym>
-supports data integrity verification using the <acronym>MD5</acronym> digest
-algorithm.
-This support is currently implemented in <code>ncks</code> and in the
-multifile concantenators <code>ncecat</code> and <code>ncrcat</code>.
-Activate it with the ‘<samp>--md5_dgs</samp>’ or ‘<samp>--md5_digest</samp>’ long
-options.
-As of <acronym>NCO</acronym> version 4.3.3 (July, 2013), <acronym>NCO</acronym>
-will write the <acronym>MD5</acronym> digest of each variable as an
-<code>NC_CHAR</code> attribute named <code>MD5</code>.
-This support is currently implemented in <code>ncks</code> and in the
-multifile concantenators <code>ncecat</code> and <code>ncrcat</code>.
-Activate it with the ‘<samp>--md5_wrt_att</samp>’ or
-‘<samp>--md5_write_attribute</samp>’ long options.
-</p>
-<p>The behavior and verbosity of the <acronym>MD5</acronym> digest is
-operator-dependent.
-When activating <acronym>MD5</acronym> digests with <code>ncks</code> it is assumed
-that the user simply wishes to see the digest of every variable and this
-is done when the debugging level exceeds one.
-This incurs only the minor overhead of performing the hash algorithm for
-each variable read.
-<acronym>MD5</acronym> digests may be activated in both the one- and two-filename
-argument forms of <code>ncks</code>, which are used for printing and for
-sub-setting, respectively.
-The <acronym>MD5</acronym> digests are shown as a 32-character hexadecimal string
-in which each two characters represent one byte of the 16-byte digest:
-</p><div class="example">
-<pre class="example">> ncks -O -D 2 -C --md5 -v md5_a,md5_abc ~/nco/data/in.nc
-...
-ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
-md5_a = 'a'
-ncks: INFO MD5(md5_abc) = 900150983cd24fb0d6963f7d28e17f72
-lev[0]=100 md5_abc[0--2]='abc'
-> ncks -O -D 2 -C -d lev,0 --md5 -v md5_a,md5_abc ~/nco/data/in.nc
-...
-ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
-md5_a = 'a'
-ncks: INFO MD5(md5_abc) = 0cc175b9c0f1b6a831c399e269772661
-lev[0]=100 md5_abc[0--0]='a'
-</pre></div>
-<p>In fact these examples demonstrate the validity of the hash algorithm
-since the <acronym>MD5</acronym> hashes of the strings “a” and “abc” are
-widely known.
-The second example shows that the hyperslab of variable <code>md5_abc</code>
-(= “abc”) consisting of only its first letter (= “a”) has the same
-hash as the variable <code>md5_a</code> (“a”).
-This illustrates that <acronym>MD5</acronym> digests act only on variable data,
-not on metadata.
-</p>
-<p>When activating <acronym>MD5</acronym> digests with <code>ncecat</code> or
-<code>ncrcat</code> it is assumed that the user wishes to verify
-that every variable written to disk has the same <acronym>MD5</acronym> digest
-as when it is subsequently read from disk.
-This incurs the major additional overhead of reading in each variable
-after it is written and performing the hash algorithm again on that to
-compare to the original hash.
-Moreover, it is assumed that such operations are generally done
-“production mode” where the user is not interested in actually
-examining the digests herself.
-The digests proceed silently unless the debugging level exceeds three:
-</p><div class="example">
-<pre class="example">> ncecat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
-...
-ncecat: INFO MD5(wnd_spd) = bec190dd944f2ce2794a7a4abf224b28
-ncecat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
-> ncrcat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
-...
-ncrcat: INFO MD5(wnd_spd) = 74699bb0a72b7f16456badb2c995f1a1
-ncrcat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
-</pre></div>
-<p>Regardless of the debugging level, an error is returned when the digests
-of the variable read from the source file and from the output file
-disagree.
-</p>
-<p>These rules are evolving and as <acronym>NCO</acronym> pays more attention to
-data integrity.
-We welcome feedback and suggestions from users.
-</p>
-<a name="bfr_sz_hnt"></a> <!-- http://nco.sf.net/nco.html#bfr_sz_hnt -->
-<a name="bfr"></a> <!-- http://nco.sf.net/nco.html#bfr -->
-<a name="buffer"></a> <!-- http://nco.sf.net/nco.html#buffer --><hr>
-<a name="Buffer-sizes"></a>
-<div class="header">
-<p>
-Next: <a href="#RAM-disks" accesskey="n" rel="next">RAM disks</a>, Previous: <a href="#MD5-digests" accesskey="p" rel="prev">MD5 digests</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Buffer-sizes-1"></a>
-<h3 class="section">3.30 Buffer sizes</h3>
-<a name="index-_002d_002dbfr_005fsz_005fhnt"></a>
-<a name="index-Buffer-sizes"></a>
-<a name="index-File-buffers"></a>
-<a name="index-stat_0028_0029-system-call"></a>
-<a name="index-I_002fO-block-size"></a>
-<a name="index-System-calls"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: <br>
-Long options: ‘<samp>--bfr_sz_hnt</samp>’, ‘<samp>--buffer_size_hint</samp>’<br>
-</p></td></tr></table>
-
-<p>As of <acronym>NCO</acronym> version 4.2.0 (May, 2012), <acronym>NCO</acronym>
-allows the user to request specific buffer sizes to allocate for reading
-and writing files.
-This buffer size determines how many system calls the netCDF layer must
-invoke to read and write files.
-By default, netCDF uses the preferred I/O block size returned as the
-‘<samp>st_blksize</samp>’ member of the ‘<samp>stat</samp>’ structure returned by the
-<code>stat()</code> system call
-<a name="DOCF41" href="#FOOT41"><sup>41</sup></a>.
-Otherwise, netCDF uses twice the system pagesize.
-Larger sizes can increase access speed by reducing the number of
-system calls netCDF makes to read/write data from/to disk.
-Because netCDF cannot guarantee the buffer size request will be met, the
-actual buffer size granted by the system is printed as an INFO
-statement.
-</p><div class="example">
-<pre class="example"># Request 2 MB file buffer instead of default 8 kB buffer
-> ncks -O -D 3 --bfr_sz=2097152 ~/nco/data/in.nc ~/foo.nc
-...
-ncks: INFO nc__open() will request file buffer size = 2097152 bytes
-ncks: INFO nc__open() opened file with buffer size = 2097152 bytes
-...
-</pre></div>
-
-<a name="ram_all"></a> <!-- http://nco.sf.net/nco.html#ram_all -->
-<a name="ram"></a> <!-- http://nco.sf.net/nco.html#ram -->
-<a name="diskless"></a> <!-- http://nco.sf.net/nco.html#diskless --><hr>
-<a name="RAM-disks"></a>
-<div class="header">
-<p>
-Next: <a href="#Packed-data" accesskey="n" rel="next">Packed data</a>, Previous: <a href="#Buffer-sizes" accesskey="p" rel="prev">Buffer sizes</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="RAM-disks-1"></a>
-<h3 class="section">3.31 RAM disks</h3>
-<a name="index-_002d_002dram_005fall-1"></a>
-<a name="index-_002d_002dcreate_005fram-1"></a>
-<a name="index-_002d_002dopen_005fram-2"></a>
-<a name="index-_002d_002ddiskless_005fall-1"></a>
-<a name="index-RAM-disks-1"></a>
-<a name="index-RAM-files-1"></a>
-<a name="index-NC_005fDISKLESS"></a>
-<a name="index-diskless-files"></a>
-<a name="index-memory-requirements-2"></a>
-<a name="index-memory-available-1"></a>
-<a name="index-RAM-1"></a>
-<a name="index-swap-space-2"></a>
-<a name="index-peak-memory-usage-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: <br>
-Long options: ‘<samp>--ram_all</samp>’, ‘<samp>--create_ram</samp>’, ‘<samp>--open_ram</samp>’,
-‘<samp>--diskless_all</samp>’<br>
-</p></td></tr></table>
-
-<p>As of <acronym>NCO</acronym> version 4.2.1 (August, 2012), <acronym>NCO</acronym> supports
-the use of diskless files, aka <acronym>RAM</acronym> disks, for file access and creation.
-Two independent switches, ‘<samp>--open_ram</samp>’ and ‘<samp>--create_ram</samp>’,
-control this feature.
-Before describing the specifics of these switches, we describe why many
-<acronym>NCO</acronym> operations will not benefit from them.
-Essentially, reading/writing from/to <acronym>RAM</acronym> rather than disk only hastens
-the task when reads/writes to disk are avoided.
-Most <acronym>NCO</acronym> operations are simple enough that they require a
-single read-from/write-to disk for every block of input/output.
-Diskless access does not change this, but it does add an extra
-read-from/write-to RAM.
-However this extra <acronym>RAM</acronym> write/read does avoid contention for limited
-system resources like disk-head access.
-Operators which may benefit from <acronym>RAM</acronym> disks include <code>ncwa</code>, which
-may need to read weighting variables multiple times, the multi-file
-operators <code>ncra</code>, <code>ncrcat</code>, and <code>ncecat</code>,
-which may try to write output at least once per input file, and
-<code>ncap2</code> scripts which may be arbitrarily long and convoluted.
-</p>
-<p>The ‘<samp>--open_ram</samp>’ switch causes input files to copied to <acronym>RAM</acronym> when
-opened.
-All further metadata and data access occurs in <acronym>RAM</acronym> and thus avoids
-access time delays caused by disk-head movement.
-Usually input data is read at most once so it is unlikely that
-requesting input files be stored in <acronym>RAM</acronym> will save much time.
-The likeliest exceptions are files that are accessed numerous times,
-such as those analyzed extensively analyzed by <code>ncap2</code>.
-</p>
-<p>Invoking ‘<samp>--open_ram</samp>’, ‘<samp>--ram_all</samp>’, or ‘<samp>--diskless_all</samp>’
-uses much more system memory.
-To copy the input file to <acronym>RAM</acronym> increases the sustained
-memory use by exactly the on-disk filesize of the input file, i.e.,
-<em>MS += FT</em>.
-For large input files this can be a huge memory burden that starves
-the rest of the <acronym>NCO</acronym> analysis of sufficient <acronym>RAM</acronym>.
-To be safe, use ‘<samp>--open_ram</samp>’, ‘<samp>--ram_all</samp>’, or
-‘<samp>--diskless_all</samp>’ only on files that are much (say at least a factor
-of four) smaller than your available system <acronym>RAM</acronym>.
-See <a href="#Memory-Requirements">Memory Requirements</a> for further details.
-</p>
-<a name="index-RAM-variables"></a>
-<p>The ‘<samp>--create_ram</samp>’ switch causes output files to be created in RAM,
-rather than on disk.
-These files are copied to disk only when closed, i.e., when the
-operator completes.
-Creating files in <acronym>RAM</acronym> may save time, especially with <code>ncap2</code>
-computations that are iterative, e.g., loops, and for multi-file
-operators that write output every record (timestep) or file.
-RAM files provide many of the same benefits as <acronym>RAM</acronym> variables in such
-cases (see <a href="#RAM-variables">RAM variables</a>).
-</p>
-<p>Two switches, ‘<samp>--ram_all</samp>’ and ‘<samp>--diskless_all</samp>’, are convenient
-shortcuts for specifying both ‘<samp>--create_ram</samp>’ and
-‘<samp>--diskless_ram</samp>’.
-Thus
-</p><div class="example">
-<pre class="example">ncks in.nc out.nc # Default: Open in.nc on disk, write out.nc to disk
-ncks --open_ram in.nc out.nc # Open in.nc in RAM, write out.nc to disk
-ncks --create_ram in.nc out.nc # Create out.nc in RAM, write to disk
-# Open in.nc in RAM, create out.nc in RAM, then write out.nc to disk
-ncks --open_ram --create_ram in.nc out.nc
-ncks --ram_all in.nc out.nc # Same as above
-ncks --diskless_all in.nc out.nc # Same as above
-</pre></div>
-
-<p>It is straightforward to demonstrate the efficacy of <acronym>RAM</acronym> disks.
-For <acronym>NASA</acronym> we constructed a test that employs <code>ncecat</code>
-an arbitrary number (set to one hundred thousand) of files are all
-symbolically linked to the same file.
-Everything is on the local filesystem (not <acronym>DAP</acronym>).
-</p><div class="example">
-<pre class="verbatim"># Create symbolic links for benchmark
-cd ${DATA}/nco # Do all work here
-for idx in {1..99999}; do
- idx_fmt=`printf "%05d" ${idx}`
- /bin/ln -s ${DATA}/nco/LPRM-AMSR_E_L3_D_SOILM3_V002-20120512T111931Z_20020619.nc \
- ${DATA}/nco/${idx_fmt}.nc
-done
-# Benchmark time to ncecat one hundred thousand files
-time ncecat --create_ram -O -u time -v ts -d Latitude,40.0 \
- -d Longitude,-105.0 -p ${DATA}/nco -n 99999,5,1 00001.nc ~/foo.nc
-</pre></div>
-<p>Run normally on a laptop in 201303, this completes in 21 seconds<!-- /@w -->.
-The ‘<samp>--create_ram</samp>’ reduces the elapsed time to 9 seconds<!-- /@w -->.
-Some of this speed may be due to using symlinks and caching.
-However, the efficacy of ‘<samp>--create_ram</samp>’ is clear.
-Placing the output file in <acronym>RAM</acronym> avoids thousands of disk writes.
-It is not unreasonable to for <acronym>NCO</acronym> to process a million files
-like this in a few minutes.
-However, there is no substitute for benchmarking with real files.
-</p>
-<a name="index-temporary-output-files-1"></a>
-<a name="index-temporary-files-1"></a>
-<a name="index-_002d_002dno_005ftmp_005ffl-1"></a>
-<p>A completely independent way to reduce time spent writing files is
-to refrain from writing temporary output files.
-This is accomplished with the ‘<samp>--no_tmp_fl</samp>’ switch
-(see <a href="#Temporary-Output-Files">Temporary Output Files</a>).
-</p>
-<a name="pck"></a> <!-- http://nco.sf.net/nco.html#pck -->
-<a name="pack"></a> <!-- http://nco.sf.net/nco.html#pack --><hr>
-<a name="Packed-data"></a>
-<div class="header">
-<p>
-Next: <a href="#Operation-Types" accesskey="n" rel="next">Operation Types</a>, Previous: <a href="#RAM-disks" accesskey="p" rel="prev">RAM disks</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Packed-data-1"></a>
-<h3 class="section">3.32 Packed data</h3>
-<a name="index-packing-2"></a>
-<a name="index-unpacking-1"></a>
-<a name="index-add_005foffset-1"></a>
-<a name="index-scale_005ffactor"></a>
-<a name="index-missing_005fvalue-1"></a>
-<a name="index-_005fFillValue-1"></a>
-<a name="index-pack_0028x_0029"></a>
-<a name="index-unpack_0028x_0029"></a>
-<a name="index-_002d_002dhdf_005fupk"></a>
-<a name="index-_002d_002dhdf_005funpack"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncflint</code>, <code>ncpdq</code>, <code>ncra</code>, <code>ncwa</code><br>
-Short options: None<br>
-Long options: ‘<samp>--hdf_upk</samp>’, ‘<samp>--hdf_unpack</samp>’<br>
-</p></td></tr></table>
-
-<p>The phrase <em>packed data</em> refers to data which are stored in the
-standard netCDF3 packing format which employs a lossy algorithm.
-See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a> for a description of deflation, a
-lossless compression technique available with netCDF4 only.
-Packed data may be deflated to save additional space.
-</p>
-<a name="Packing-Algorithm"></a>
-<h4 class="unnumberedsubsec">Packing Algorithm</h4>
-<p><em>Packing</em>
-The standard netCDF packing algorithm (described
-<a href="http://www.unidata.ucar.edu/software/netcdf/docs/netcdf/Attribute-Conventions.html">here</a>)
-produces data with
-the same dynamic range as the original but which requires no more than
-half the space to store.
-Like all packing algorithms, it is <em>lossy</em>.
-The packed variable is stored (usually) as type <code>NC_SHORT</code>
-with the two attributes required to unpack the variable,
-<code>scale_factor</code> and <code>add_offset</code>, stored at the original
-(unpacked) precision of the variable
-<a name="DOCF42" href="#FOOT42"><sup>42</sup></a>.
-Let <var>min</var> and <var>max</var> be the minimum and maximum values
-of <var>x</var>.<!-- /@w -->
-</p><br>
-<p><var>scale_factor</var> = (<var>max</var>-<var>min</var>)/<var>ndrv</var><br>
-<var>add_offset</var> = 0.5*(<var>min</var>+<var>max</var>)<br>
-<var>pck</var> = (<var>upk</var>-<var>add_offset</var>)/<var>scale_factor</var> = (<var>upk</var>-0.5*(<var>min</var>+<var>max</var>))*<var>ndrv</var>/(<var>max</var>-<var>min</var>)<br>
-</p><br>
-<p>where <var>ndrv</var> is the number of discrete representable values for
-given type of packed variable.
-The theoretical maximum value for <var>ndrv</var> is two raised to the
-number of bits used to store the packed variable.
-Thus if the variable is packed into type <code>NC_SHORT</code>, a two-byte
-datatype, then there are at most <em>2^{16} = 65536</em> distinct values
-representable.
-In practice, the number of discretely representible values is taken
-to be two less than the theoretical maximum.
-This leaves space for a missing value and solves potential problems with
-rounding that may occur during the unpacking of the variable.
-Thus for <code>NC_SHORT</code>, <em>ndrv = 65536 - 2 = 65534</em>.
-Less often, the variable may be packed into type <code>NC_CHAR</code>,
-where <em>ndrv = 2^{8} - 2 = 256 - 2 = 254</em>, or type <code>NC_INT</code> where
-where <em>ndrv = 2^{32} - 2 = 4294967295 - 2 = 4294967293</em>.
-One useful feature of (lossy) netCDF packing algorithm is that
-additional, loss-less packing algorithms perform well on top of it.
-</p>
-<a name="upk"></a> <!-- http://nco.sf.net/nco.html#upk -->
-<a name="unpack"></a> <!-- http://nco.sf.net/nco.html#unpack --><a name="Unpacking-Algorithm"></a>
-<h4 class="unnumberedsubsec">Unpacking Algorithm</h4>
-<p><em>Unpacking</em>
-The unpacking algorithm depends on the presence of two attributes,
-<code>scale_factor</code> and <code>add_offset</code>.
-If <code>scale_factor</code> is present for a variable, the data are
-multiplied by the value <var>scale_factor</var> after the data are read.
-If <code>add_offset</code> is present for a variable, then the
-<var>add_offset</var> value is added to the data after the data are read.
-If both <code>scale_factor</code> and <code>add_offset</code> attributes are
-present, the data are first scaled by <var>scale_factor</var> before the
-offset <var>add_offset</var> is added.
-</p><br>
-<p><var>upk</var> = <var>scale_factor</var>*<var>pck</var> + <var>add_offset</var> = (<var>max</var>-<var>min</var>)*<var>pck</var>/<var>ndrv</var> + 0.5*(<var>min</var>+<var>max</var>)<br>
-</p><br>
-<p>When <code>scale_factor</code> and <code>add_offset</code> are used for packing, the
-associated variable (containing the packed data) is typically of type
-<code>byte</code> or <code>short</code>, whereas the unpacked values are intended to
-be of type <code>int</code>, <code>float</code>, or <code>double</code>.
-An attribute’s <code>scale_factor</code> and <code>add_offset</code> and
-<code>_FillValue</code>, if any, should all be of the type intended for the
-unpacked data, i.e., <code>int</code>, <code>float</code> or <code>double</code>.
-</p>
-<a name="Default-Handling-of-Packed-Data"></a>
-<h4 class="unnumberedsubsec">Default Handling of Packed Data</h4>
-<a name="hdf_upk"></a> <!-- http://nco.sf.net/nco.html#hdf_upk -->
-<a name="hdf_unpack"></a> <!-- http://nco.sf.net/nco.html#hdf_unpack --><a name="index-interoperability"></a>
-<a name="index-HDF-unpacking"></a>
-<p>Most files originally written in <acronym>HDF</acronym> format use the
-<acronym>HDF</acronym> packing/unpacking algorithm.
-This algorithm is incompatible with the netCDF packing algorithm
-described above.
-The unpacking component of the <acronym>HDF</acronym> algorithm (described
-<a href="http://www.hdfgroup.org/HDF5/doc/UG/UG_frame10Datasets.html">here</a>) is
-</p><br>
-<p><var>upk</var> = <var>scale_factor</var>*(<var>pck</var> - <var>add_offset</var>)<br>
-</p><br>
-<p>Confusingly, the (incompatible) netCDF and <acronym>HDF</acronym> algorithms both
-store their parameters in attributes with the same names
-(<code>scale_factor</code> and <code>add_offset</code>).
-Data packed with one algorithm should never be unpacked with the other;
-doing so will result in incorrect answers.
-Unfortunately, few users are aware that their datasets may be packed,
-and fewer know the details of the packing algorithm employed.
-This is what we in the “bizness” call an <em>interoperability</em> issue
-because it hampers data analysis performed on heterogeneous systems.
-</p>
-<p>As described below, <acronym>NCO</acronym> automatically unpacks data before
-performing arithmetic.
-This automatic unpacking occurs silently since there is usually no
-reason to bother users with these details.
-There is as yet no generic way for <acronym>NCO</acronym> to know which
-packing convention was used, so <acronym>NCO</acronym> <em>assumes</em> the netCDF
-convention was used.
-<acronym>NCO</acronym> uses the same convention for unpacking unless explicitly
-told otherwise with the ‘<samp>--hdf_upk</samp>’ (also ‘<samp>--hdf_unpack</samp>’)
-switch.
-Until and unless a method of automatically detecting the packing method
-is devised, it must remain the user’s responsibility to tell
-<acronym>NCO</acronym> when to use the <acronym>HDF</acronym> convention instead of the
-netCDF convention to unpack.
-</p>
-<p>If your data originally came from an <acronym>HDF</acronym> file (e.g.,
-<acronym>NASA</acronym> <acronym>EOS</acronym>) then it was likely packed with the
-<acronym>HDF</acronym> convention and must be unpacked with the same convention.
-Our recommendation is to only request <acronym>HDF</acronym> unpacking when you
-are certain.
-Most packed datasets encountered by <acronym>NCO</acronym> will have used the
-netCDF convention.
-Those that were not will hopefully produce noticeably weird values when
-unpacked by the wrong algorithm.
-Before or after panicking, treat this as a clue to re-try your commands
-with the ‘<samp>--hdf_upk</samp>’ switch.
-See <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a> for an easy technique
-to unpack data packed with the <acronym>HDF</acronym> convention, and then
-re-pack it with the netCDF convention.
-</p>
-<a name="Default-Handling-of-Packed-Data-1"></a>
-<h4 class="unnumberedsubsec">Default Handling of Packed Data</h4>
-<p>All <acronym>NCO</acronym> arithmetic operators understand packed data.
-The operators automatically unpack any packed variable in the input
-file which will be arithmetically processed.
-For example, <code>ncra</code> unpacks all record variables,
-and <code>ncwa</code> unpacks all variable which contain a dimension to
-be averaged.
-These variables are stored unpacked in the output file.
-</p>
-<p>On the other hand, arithmetic operators do not unpack non-processed
-variables.
-For example, <code>ncra</code> leaves all non-record variables packed,
-and <code>ncwa</code> leaves packed all variables lacking an averaged
-dimension.
-These variables (called fixed variables) are passed unaltered from the
-input to the output file.
-Hence fixed variables which are packed in input files remain packed in
-output files.
-Completely packing and unpacking files is easily accomplished with
-<code>ncpdq</code> (see <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a>).
-Pack and unpack individual variables with <code>ncpdq</code> and the
-<code>ncap2</code> <code>pack()</code> and <code>unpack()</code> functions
-(see <a href="#Methods-and-functions">Methods and functions</a>).
-</p>
-<a name="op_typ"></a> <!-- http://nco.sf.net/nco.html#op_typ --><hr>
-<a name="Operation-Types"></a>
-<div class="header">
-<p>
-Next: <a href="#Type-Conversion" accesskey="n" rel="next">Type Conversion</a>, Previous: <a href="#Packed-data" accesskey="p" rel="prev">Packed data</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Operation-Types-1"></a>
-<h3 class="section">3.33 Operation Types</h3>
-<a name="index-operation-types"></a>
-<a name="index-avg"></a>
-<a name="index-sqravg"></a>
-<a name="index-avgsqr"></a>
-<a name="index-min"></a>
-<a name="index-max"></a>
-<a name="index-mabs"></a>
-<a name="index-mebs"></a>
-<a name="index-mibs"></a>
-<a name="index-rmssdn"></a>
-<a name="index-rms"></a>
-<a name="index-ttl"></a>
-<a name="index-sqrt"></a>
-<a name="index-average"></a>
-<a name="index-mean"></a>
-<a name="index-total"></a>
-<a name="index-minimum"></a>
-<a name="index-maximum"></a>
-<a name="index-root_002dmean_002dsquare"></a>
-<a name="index-standard-deviation"></a>
-<a name="index-variance"></a>
-<a name="index-_002dy-op_005ftyp"></a>
-<a name="index-_002d_002doperation-op_005ftyp"></a>
-<a name="index-_002d_002dop_005ftyp-op_005ftyp"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncap2</code>, <code>ncra</code>, <code>nces</code>, <code>ncwa</code><br>
-Short options: ‘<samp>-y</samp>’<br>
-Long options: ‘<samp>--operation</samp>’, ‘<samp>--op_typ</samp>’<br>
-</p></td></tr></table>
-<p>The ‘<samp>-y <var>op_typ</var></samp>’ switch allows specification of many different
-types of operations
-Set <var>op_typ</var> to the abbreviated key for the corresponding operation:
-</p><dl compact="compact">
-<dt><code>avg</code></dt>
-<dd><p>Mean value
-</p></dd>
-<dt><code>sqravg</code></dt>
-<dd><p>Square of the mean
-</p></dd>
-<dt><code>avgsqr</code></dt>
-<dd><p>Mean of sum of squares
-</p></dd>
-<dt><code>max</code></dt>
-<dd><p>Maximum value
-</p></dd>
-<dt><code>min</code></dt>
-<dd><p>Minimum value
-</p></dd>
-<dt><code>mabs</code></dt>
-<dd><p>Maximum absolute value
-</p></dd>
-<dt><code>mebs</code></dt>
-<dd><p>Mean absolute value
-</p></dd>
-<dt><code>mabs</code></dt>
-<dd><p>Minimum absolute value
-</p></dd>
-<dt><code>rms</code></dt>
-<dd><p>Root-mean-square (normalized by <var>N</var>)
-</p></dd>
-<dt><code>rmssdn</code></dt>
-<dd><p>Root-mean square (normalized by <var>N-1</var>)
-</p></dd>
-<dt><code>sqrt</code></dt>
-<dd><p>Square root of the mean
-</p></dd>
-<dt><code>ttl</code></dt>
-<dd><p>Sum of values
-</p></dd>
-</dl>
-<a name="index-coordinate-variable-1"></a>
-<p><acronym>NCO</acronym> assumes coordinate variables represent grid axes, e.g.,
-longitude.
-The only rank-reduction which makes sense for coordinate variables
-is averaging.
-Hence <acronym>NCO</acronym> implements the operation type requested with
-‘<samp>-y</samp>’ on all non-coordinate variables, not on coordinate variables.
-When an operation requires a coordinate variable to be reduced in
-rank, i.e., from one dimension to a scalar or from one dimension to
-a degenerate (single value) array, then <acronym>NCO</acronym>
-<em>always averages</em> the coordinate variable regardless of the
-arithmetic operation type performed on the non-coordinate variables.
-</p>
-<p>The mathematical definition of each arithmetic operation is given below.
-See <a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a>, for additional information on
-masks and normalization.
-If an operation type is not specified with ‘<samp>-y</samp>’ then the operator
-performs an arithmetic average by default.
-Averaging is described first so the terminology for the other operations
-is familiar.
-</p>
-<table class="cartouche" border="1"><tr><td>
-<p><b>Note for HTML users</b>:
-<br>The definition of mathematical operations involving rank reduction
-(e.g., averaging) relies heavily on mathematical expressions which
-cannot easily be represented in HTML.
-<b>See the <a href="./nco.pdf">printed manual</a> for much more detailed
-and complete documentation of this subject.</b></td></tr></table>
-
-<p>The definitions of some of these operations are not universally useful.
-Mostly they were chosen to facilitate standard statistical
-computations within the <acronym>NCO</acronym> framework.
-We are open to redefining and or adding to the above.
-If you are interested in having other statistical quantities
-defined in <acronym>NCO</acronym> please contact the <acronym>NCO</acronym> project
-(see <a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a>).
-</p>
-<p>EXAMPLES
-</p>
-<a name="mabs"></a> <!-- http://nco.sf.net/nco.html#mabs -->
-<a name="mebs"></a> <!-- http://nco.sf.net/nco.html#mebs -->
-<a name="mibs"></a> <!-- http://nco.sf.net/nco.html#mibs -->
-<a name="min"></a> <!-- http://nco.sf.net/nco.html#min -->
-<a name="max"></a> <!-- http://nco.sf.net/nco.html#max -->
-<a name="rms"></a> <!-- http://nco.sf.net/nco.html#rms --><p>Suppose you wish to examine the variable <code>prs_sfc(time,lat,lon)</code>
-which contains a time series of the surface pressure as a function of
-latitude and longitude.
-Find the minimum value of <code>prs_sfc</code> over all dimensions:
-</p><div class="example">
-<pre class="example">ncwa -y min -v prs_sfc in.nc foo.nc
-</pre></div>
-<p>Find the maximum value of <code>prs_sfc</code> at each time interval for each
-latitude:
-</p><div class="example">
-<pre class="example">ncwa -y max -v prs_sfc -a lon in.nc foo.nc
-</pre></div>
-<p>Find the root-mean-square value of the time-series of <code>prs_sfc</code> at
-every gridpoint:
-</p><div class="example">
-<pre class="example">ncra -y rms -v prs_sfc in.nc foo.nc
-ncwa -y rms -v prs_sfc -a time in.nc foo.nc
-</pre></div>
-<p>The previous two commands give the same answer but <code>ncra</code> is
-preferred because it has a smaller memory footprint.
-<a name="index-degenerate-dimension-1"></a>
-A dimension of size one is said to be <em>degenerate</em>.
-By default, <code>ncra</code> leaves the (degenerate) <code>time</code>
-dimension in the output file (which is usually useful) whereas
-<code>ncwa</code> removes the <code>time</code> dimension (unless ‘<samp>-b</samp>’ is
-given).
-</p>
-<p>These operations work as expected in multi-file operators.
-Suppose that <code>prs_sfc</code> is stored in multiple timesteps per file
-across multiple files, say <samp>jan.nc</samp>, <samp>feb.nc</samp>,
-<samp>march.nc</samp>.
-We can now find the three month maximum surface pressure at every point.
-</p><div class="example">
-<pre class="example">nces -y max -v prs_sfc jan.nc feb.nc march.nc out.nc
-</pre></div>
-
-<a name="standard_deviation"></a> <!-- http://nco.sf.net/nco.html#standard_deviation -->
-<a name="stddvn"></a> <!-- http://nco.sf.net/nco.html#stddvn -->
-<a name="sdn"></a> <!-- http://nco.sf.net/nco.html#sdn -->
-<a name="sdv"></a> <!-- http://nco.sf.net/nco.html#sdv -->
-<a name="xmp_sdn"></a> <!-- http://nco.sf.net/nco.html#xmp_sdn --><a name="index-standard-deviation-1"></a>
-<p>It is possible to use a combination of these operations to compute
-the variance and standard deviation of a field stored in a single file
-or across multiple files.
-The procedure to compute the temporal standard deviation of the surface
-pressure at all points in a single file <samp>in.nc</samp> involves three
-steps.
-</p><div class="example">
-<pre class="example">ncwa -O -v prs_sfc -a time in.nc out.nc
-ncbo -O -v prs_sfc in.nc out.nc out.nc
-ncra -O -y rmssdn out.nc out.nc
-</pre></div>
-<p>First construct the temporal mean of <code>prs_sfc</code> in the file
-<samp>out.nc</samp>.
-Next overwrite <samp>out.nc</samp> with the anomaly (deviation from the mean).
-Finally overwrite <samp>out.nc</samp> with the root-mean-square of itself.
-Note the use of ‘<samp>-y rmssdn</samp>’ (rather than ‘<samp>-y rms</samp>’) in the
-final step.
-This ensures the standard deviation is correctly normalized by one fewer
-than the number of time samples.
-The procedure to compute the variance is identical except for the use of
-‘<samp>-y var</samp>’ instead of ‘<samp>-y rmssdn</samp>’ in the final step.
-</p>
-<p><code>ncap2</code> can also compute statistics like standard deviations.
-Brute-force implementation of formulae is one option, e.g.,
-</p><div class="example">
-<pre class="example">ncap2 -s 'prs_sfc_sdn=sqrt((prs_sfc-prs_sfc.avg($time)^2).total($time)/($time.size-1))'
- in.nc out.nc
-</pre></div>
-<p>The operation may, of course, be broken into multiple steps in order
-to archive intermediate quantities, such as the time-anomalies
-</p><div class="example">
-<pre class="example">ncap2 -s 'prs_sfc_anm=prs_sfc-prs_sfc.avg($time)' \
- -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-1))' \
- in.nc out.nc
-</pre></div>
-
-<p><code>ncap2</code> supports intrinsic standard deviation functions
-(see <a href="#Operation-Types">Operation Types</a>) which simplify the above expression to
-</p><div class="example">
-<pre class="example">ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in.nc out.nc
-</pre></div>
-<p>These instrinsic functions compute the answer quickly and concisely.
-</p>
-<p>The procedure to compute the spatial standard deviation of a field
-in a single file <samp>in.nc</samp> involves three steps.
-</p><div class="example">
-<pre class="example">ncwa -O -v prs_sfc,gw -a lat,lon -w gw in.nc out.nc
-ncbo -O -v prs_sfc,gw in.nc out.nc out.nc
-ncwa -O -y rmssdn -v prs_sfc -a lat,lon -w gw out.nc out.nc
-</pre></div>
-<p>First the appropriately weighted (with ‘<samp>-w gw</samp>’) spatial mean values
-are written to the output file.
-This example includes the use of a weighted variable specified with
-‘<samp>-w gw</samp>’.
-When using weights to compute standard deviations one must remember to
-include the weights in the initial output files so that they may be used
-again in the final step.
-The initial output file is then overwritten with the gridpoint
-deviations from the spatial mean.
-Finally the root-mean-square of the appropriately weighted spatial
-deviations is taken.
-</p>
-<p>The <code>ncap2</code> solution to the spatially-weighted standard
-deviation problem is
-</p><div class="example">
-<pre class="example">ncap2 -s 'prs_sfc_sdn=(prs_sfc*gw-prs_sfc*gw.avg($lat,$lon)).rmssdn($lat,$lon)' \
- in.nc out.nc
-</pre></div>
-<p>Be sure to multiply the variable by the weight prior to computing the
-the anomalies and the standard deviation.
-</p>
-<p>The procedure to compute the standard deviation of a time-series across
-multiple files involves one extra step since all the input must first be
-collected into one file.
-</p><div class="example">
-<pre class="example">ncrcat -O -v tpt in.nc in.nc foo1.nc
-ncwa -O -a time foo1.nc foo2.nc
-ncbo -O -v tpt foo1.nc foo2.nc foo3.nc
-ncra -O -y rmssdn foo3.nc out.nc
-</pre></div>
-<p>The first step assembles all the data into a single file.
-Though this may consume a lot of temporary disk space, it is more or
-less required by the <code>ncbo</code> operation in the third step.
-</p>
-<a name="typ_cnv"></a> <!-- http://nco.sf.net/nco.html#typ_cnv --><hr>
-<a name="Type-Conversion"></a>
-<div class="header">
-<p>
-Next: <a href="#Batch-Mode" accesskey="n" rel="next">Batch Mode</a>, Previous: <a href="#Operation-Types" accesskey="p" rel="prev">Operation Types</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Type-Conversion-1"></a>
-<h3 class="section">3.34 Type Conversion</h3>
-<a name="index-type-conversion"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability (automatic type conversion): <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncflint</code>, <code>ncra</code>, <code>ncwa</code><br>
-Short options: None (it’s <em>automatic</em>)<br>
-Availability (manual type conversion): <code>nces</code>, <code>ncra</code>, <code>ncwa</code><br>
-Short options: None<br>
-Long options: ‘<samp>--dbl</samp>’, ‘<samp>--flt</samp>’, ‘<samp>--rth_dbl</samp>’, ‘<samp>--rth_flt</samp>’<br>
-</p></td></tr></table>
-<a name="index-promotion"></a>
-<a name="index-demotion"></a>
-<a name="index-automatic-type-conversion"></a>
-<a name="index-manual-type-conversion"></a>
-<p>Type conversion refers to the casting or coercion of one fundamental or
-atomic data type to another, e.g., converting <code>NC_SHORT</code> (two
-bytes) to <code>NC_DOUBLE</code> (eight bytes).
-Type conversion always <em>promotes</em> or <em>demotes</em> the range and/or
-precision of the values a variable can hold.
-Type conversion is automatic when the language carries out this
-promotion according to an internal set of rules without explicit user
-intervention.
-In contrast, manual type conversion refers to explicit user commands to
-change the type of a variable or attribute.
-Most type conversion happens automatically, yet there are situations in
-which manual type conversion is advantageous.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Automatic-type-conversion" accesskey="1">Automatic type conversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Promoting-Single_002dprecision-to-Double" accesskey="2">Promoting Single-precision to Double</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Manual-type-conversion" accesskey="3">Manual type conversion</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Automatic-type-conversion"></a>
-<div class="header">
-<p>
-Next: <a href="#Promoting-Single_002dprecision-to-Double" accesskey="n" rel="next">Promoting Single-precision to Double</a>, Previous: <a href="#Type-Conversion" accesskey="p" rel="prev">Type Conversion</a>, Up: <a href="#Type-Conversion" accesskey="u" rel="up">Type Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Automatic-type-conversion-1"></a>
-<h4 class="subsection">3.34.1 Automatic type conversion</h4>
-
-<p>There are at least two reasons to avoid type conversions.
-First, type conversions are expensive since they require creating
-(temporary) buffers and casting each element of a variable from its
-storage type to some other type and then, often, converting it back.
-Second, a dataset’s creator perhaps had a good reason for storing
-data as, say, <code>NC_FLOAT</code> rather than <code>NC_DOUBLE</code>.
-In a scientific framework there is no reason to store data with more
-precision than the observations merit.
-Normally this is single-precision, which guarantees 6–9 digits of
-precision.
-Reasons to engage in type conversion include avoiding rounding
-errors and out-of-range limitations of less-precise types.
-This is the case with most integers.
-Thus <acronym>NCO</acronym> defaults to automatically promote integer types to
-floating point when performing lengthy arithmetic, yet <acronym>NCO</acronym>
-defaults to not promoting single to double-precision floats.
-</p>
-<p>Before discussing the more subtle floating point issues, we first
-examine integer promotion.
-We will show how following parsimonious conversion rules dogmatically
-can cause problems, and what <acronym>NCO</acronym> does about that.
-That said, there are situations in which implicit conversion of
-single- to double-precision is also warranted.
-Understanding the narrowness of these situations takes time, and we
-hope the reader appreciates the following detailed discussion.
-</p>
-<p>Consider the average of the two <code>NC_SHORT</code>s <code>17000s</code> and
-<code>17000s</code>.
-A straightforward average without promotion results in garbage since the
-intermediate value which holds their sum is also of type <code>NC_SHORT</code>
-and thus overflows on (i.e., cannot represent) values greater than
-32,767
-<a name="DOCF43" href="#FOOT43"><sup>43</sup></a>.
-There are valid reasons for expecting this operation to succeed and
-the <acronym>NCO</acronym> philosophy is to make operators do what you want, not
-what is purest.
-Thus, unlike C and Fortran, but like many other higher level interpreted
-languages, <acronym>NCO</acronym> arithmetic operators will perform automatic type
-conversion on integers when all the following conditions are met
-<a name="DOCF44" href="#FOOT44"><sup>44</sup></a>:
-</p><ol>
-<li> The requested operation is arithmetic.
-This is why type conversion is limited to the operators <code>ncap2</code>,
-<code>ncbo</code>, <code>nces</code>, <code>ncflint</code>, <code>ncra</code>, and
-<code>ncwa</code>.
-</li><li> The arithmetic operation could benefit from type conversion.
-Operations that could benefit include averaging, summation, or any
-“hard” arithmetic that could overflow or underflow.
-Larger representable sums help avoid overflow, and more precision
-helps to avoid underflow.
-Type conversion does not benefit searching for minima and maxima
-(‘<samp>-y min</samp>’, or ‘<samp>-y max</samp>’).
-</li><li> The variable on disk is of type <code>NC_BYTE</code>, <code>NC_CHAR</code>,
-<code>NC_SHORT</code>, or <code>NC_INT</code>.
-Type <code>NC_DOUBLE</code> is not promoted because there is no type of
-higher precision.
-Conversion of type <code>NC_FLOAT</code> is discussed in detail below.
-When it occurs, it follows the same procedure (promotion then
-arithmetic then demotion) as conversion of integer types.
-</li></ol>
-
-<p>When these criteria are all met, the operator promotes the variable in
-question to type <code>NC_DOUBLE</code>, performs all the arithmetic
-operations, casts the <code>NC_DOUBLE</code> type back to the original type,
-and finally writes the result to disk.
-The result written to disk may not be what you expect, because of
-incommensurate ranges represented by different types, and because of
-(lack of) rounding.
-First, continuing the above example, the average (e.g., ‘<samp>-y avg</samp>’)
-of <code>17000s</code> and <code>17000s</code> is written to disk as <code>17000s</code>.
-The type conversion feature of <acronym>NCO</acronym> makes this possible since
-the arithmetic and intermediate values are stored as <code>NC_DOUBLE</code>s,
-i.e., <code>34000.0d</code> and only the final result must be represented
-as an <code>NC_SHORT</code>.
-Without the type conversion feature of <acronym>NCO</acronym>, the average would
-have been garbage (albeit predictable garbage near <code>-15768s</code>).
-Similarly, the total (e.g., ‘<samp>-y ttl</samp>’) of <code>17000s</code> and
-<code>17000s</code> written to disk is garbage (actually <code>-31536s</code>) since
-the final result (the true total) of <em>34000</em> is outside the range
-of type <code>NC_SHORT</code>.
-</p>
-<a name="index-trunc_0028_0029"></a>
-<p>After arithmetic is computed in double-precision for promoted variables,
-the intermediate double-precision values must be demoted to the
-variables’ original storage type (e.g., from <code>NC_DOUBLE</code> to
-<code>NC_SHORT</code>).
-<acronym>NCO</acronym> has handled this demotion in three ways in its history.
-Prior to October, 2011 (version 4.0.8), <acronym>NCO</acronym> employed the
-C library<!-- /@w --> truncate function, <code>trunc()</code>
-<a name="DOCF45" href="#FOOT45"><sup>45</sup></a>.
-Truncation rounds <var>x</var> to the nearest integer not larger in absolute
-value.
-For example, truncation rounds <code>1.0d</code>, <code>1.5d</code>, and
-<code>1.8d</code> to the same value, <code>1s</code>.
-Clearly, truncation does not round floating point numbers to the nearest
-integer!
-Yet truncation is how the C language<!-- /@w --> performs implicit conversion of
-real numbers to integers.
-</p>
-<a name="index-Neil-Davis"></a>
-<p><acronym>NCO</acronym> stopped using truncation for demotion when an alert user
-(Neil Davis) informed us that this caused a small bias in the packing
-algorithm employed by <code>ncpdq</code>.
-This led to <acronym>NCO</acronym> adopting rounding functions for demotion.
-Rounding functions eliminated the small bias in the packing algorithm.
-</p>
-<a name="index-lround_0028_0029_002e"></a>
-<p>From February, 2012 through March, 2013 (versions 4.0.9–4.2.6),
-<acronym>NCO</acronym> employed the C library<!-- /@w --> family of rounding functions,
-<code>lround()</code>.
-These functions round <var>x</var> to the nearest integer, halfway cases away
-from zero.
-The problem with <code>lround()</code> is that it always rounds real values
-ending in <code>.5</code> away from zero.
-This rounds, for example, <code>1.5d</code> and <code>2.5d</code> to <code>2s</code>
-and <code>3s</code>, respectively.
-</p>
-<a name="index-lrint_0028_0029_002e"></a>
-<a name="index-IEEE-1"></a>
-<p>Since April, 2013 (version 4.3.0), <acronym>NCO</acronym> has employed the
-other C library<!-- /@w --> family of rounding functions, <code>lrint()</code>.
-This algorithm rounds <var>x</var> to the nearest integer, using the current
-rounding direction.
-Halfway cases are rounded to the nearest even integer.
-This rounds, for example, both <code>1.5d</code> and <code>2.5d</code> to the same
-value, <code>2s</code>, as recommended by the <acronym>IEEE</acronym>.
-This rounding is symmetric: up half the time, down half the time.
-This is the current and hopefully final demotion algorithm employed by
-<acronym>NCO</acronym>.
-</p>
-<p>Hence because of automatic conversion, <acronym>NCO</acronym> will compute the
-average of <code>2s</code> and <code>3s</code> in double-precision arithmetic as
-<em>(<code>2.0d</code> + <code>3.0d</code>)/<code>2.0d</code>) = <code>2.5d</code></em>.
-It then demotes this intermediate result back to <code>NC_SHORT</code> and
-stores it on disk as
-<em><code>trunc(2.5d)</code> = <code>2s</code></em> (versions up to 4.0.8),
-<em><code>lround(2.5d)</code> = <code>3s</code></em> (versions 4.0.9–4.2.6), and
-<em><code>lrint(2.5d)</code> = <code>2s</code></em> (versions 4.3.0 and later).
-</p>
-<a name="sp_dp"></a> <!-- http://nco.sf.net/nco.html#sp_dp -->
-<a name="dbl"></a> <!-- http://nco.sf.net/nco.html#dbl --><hr>
-<a name="Promoting-Single_002dprecision-to-Double"></a>
-<div class="header">
-<p>
-Next: <a href="#Manual-type-conversion" accesskey="n" rel="next">Manual type conversion</a>, Previous: <a href="#Automatic-type-conversion" accesskey="p" rel="prev">Automatic type conversion</a>, Up: <a href="#Type-Conversion" accesskey="u" rel="up">Type Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Promoting-Single_002dprecision-to-Double-1"></a>
-<h4 class="subsection">3.34.2 Promoting Single-precision to Double</h4>
-<a name="index-promotion-1"></a>
-<a name="index-implicit-conversion"></a>
-<a name="index-_002d_002ddbl"></a>
-<a name="index-_002d_002drth_005fdbl"></a>
-<a name="index-_002d_002dflt"></a>
-<a name="index-_002d_002drth_005fflt"></a>
-<p>Promotion of real numbers from single- to double-precision is
-fundamental to scientific computing.
-When it should occur depends on the precision of the inputs and the
-number of operations.
-Single-precision (four-byte) numbers contain about seven significant
-figures, while double-precision contain about sixteen.
-More, err, precisely, the <acronym>IEEE</acronym> single-precision representation
-gives from 6 to 9<!-- /@w --> significant decimal digits precision
-<a name="DOCF46" href="#FOOT46"><sup>46</sup></a>.
-And the <acronym>IEEE</acronym> double-precision representation
-gives from 15 to 17<!-- /@w --> significant decimal digits precision
-<a name="DOCF47" href="#FOOT47"><sup>47</sup></a>.
-Hence double-precision numbers represent about nine digits more
-precision than single-precision numbers.
-</p>
-<p>Given these properties, there are at least two possible arithmetic
-conventions for the treatment of real numbers:
-<a name="index-C-language-3"></a>
-<a name="index-Fortran"></a>
-</p><ol>
-<li> Conservative, aka Fortran Convention
-Automatic type conversion during arithmetic in the Fortran language is,
-by default, performed only when necessary.
-All operands in an operation are converted to the most precise type
-involved the operation before the arithmetic operation.
-Expressions which involve only single-precision numbers are computed
-entirely in single-precision.
-Expressions involving mixed precision types are computed in the type
-of higher precision.
-<acronym>NCO</acronym> by default employs the Fortan Convention for promotion.
-</li><li> Aggressive, aka C Convention
-The C language<!-- /@w --> is by default much more aggressive (and thus
-wasteful) than Fortran, and will always implicitly convert single-
-to double-precision numbers for no good reason.
-All real-number standard C library<!-- /@w --> functions are double-precision,
-and C programmers<!-- /@w --> must take extra steps to only utilize single
-precision arithmetic.
-The high level interpreted data analysis languages <acronym>IDL</acronym>,
-Matlab, and <acronym>NCL</acronym> all adopt the C Convention<!-- /@w -->.
-</li></ol>
-
-<p><acronym>NCO</acronym> does not automatically promote <code>NC_FLOAT</code> because, in
-our judgement, the performance penalty of always doing so would outweigh
-the potential benefits.
-The now-classic text “Numerical Recipes in C<!-- /@w -->” discusses this point
-under the section “Implicit Conversion of Float to Double”
-<a name="DOCF48" href="#FOOT48"><sup>48</sup></a>.
-That said, such promotion is warranted in some circumstances.
-</p>
-<p>For example, rounding errors can accumulate to worrisome levels during
-arithmetic performed on large arrays of single-precision floats.
-This use-case occurs often in geoscientific studies of climate where
-thousands-to-millions of gridpoints may contribute to a single average.
-If the inputs are all single-precision, then so should be the output.
-However the intermediate results where running sums are accumulated may
-suffer from too much rounding or from underflow unless computed in
-double-precision.
-</p>
-<p>The order of operations matters to floating point math even when the
-analytic expressions are equal.
-Cautious users feel disquieted when results from equally valid analyses
-differ in the final bits instead of agreeing bit-for-bit.
-For example, averaging arrays in multiple stages produces different
-answers than averaging them in one step.
-This is easily seen in the computation of ensemble averages by two
-different methods.
-The <acronym>NCO</acronym> test file <samp>in.nc</samp> contains single- and
-double-precision representations of the same temperature timeseries as
-<code>tpt_flt</code> and <code>tpt_dbl</code>.
-Pretend each datapoint in this timeseries represents a monthly-mean
-temperature.
-We will mimic the derivation of a fifteen-year ensemble-mean January
-temperature by concatenating the input file five times, and then
-averaging the datapoints representing January two different ways.
-In Method 1<!-- /@w --> we derive the 15-year ensemble January average in two
-steps, as the average of three five-year averages.
-This method is naturally used when each input file contains multiple
-years and multiple input files are needed
-<a name="DOCF49" href="#FOOT49"><sup>49</sup></a>.
-In Method 2<!-- /@w --> we obtain 15-year ensemble January average in a single
-step, by averaging all 15 Januaries at one time:
-</p><div class="example">
-<pre class="example"># tpt_flt and tpt_dbl are identical except for precision
-ncks --cdl -C -v tpt_flt,tpt_dbl ~/nco/data/in.nc
-# tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
-# tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
-# Create file with five "ten-month years" (i.e., 50 timesteps) of temperature data
-ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc in.nc ~/foo.nc
-# Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
-ncra --flt -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
-# Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
-ncra --flt -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
-# Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
-ncra --flt -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
-# Method 1: Obtain ensemble January average by averaging the averages
-ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
-# Method 2: Obtain ensemble January average by averaging the raw data
-# Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
-ncra --flt -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
-# Difference the two methods
-ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
-ncks --cdl ~/foo_avg_dff.nc
-# tpt_dbl = 5.6843418860808e-14 ;
-# tpt_flt = -3.051758e-05 ;
-</pre></div>
-<p>Although the two methods are arithmetically equivalent, they produce
-slightly different answers due to the different order of operations.
-Moreover, it appears at first glance that the single-precision
-answers suffer from greater error than the double-precision answers.
-In fact both precisions suffer from non-zero rounding errors.
-The answers differ negligibly to machine precision, which is about
-seven significant figures for single precision floats (<code>tpt_flt</code>),
-and sixteen significant figures for double precision (<code>tpt_dbl</code>).
-The input precision determines the answer precision.
-</p>
-<p><acronym>IEEE</acronym> arithmetic guarantees that two methods will produce
-bit-for-bit identical answers only if they compute the same operations
-in the same order.
-Bit-for-bit identical answers may also occur by happenstance when
-rounding errors exactly compensate one another.
-This is demonstrated by repeating the example above with the
-‘<samp>--dbl</samp>’ (or ‘<samp>--rth_dbl</samp>’ for clarity) option which forces
-conversion of single-precision numbers to double-precision prior to
-arithmetic.
-Now <code>ncra</code> will treat the first value of <code>tpt_flt</code>,
-<code>273.1000f</code>, as <code>273.1000000000000d</code>.
-Arithmetic on <code>tpt_flt</code> then proceeds in double-precision until the
-final answer, which is converted back to single-precision for final
-storage.
-</p><div class="example">
-<pre class="example"># Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
-ncra --dbl -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
-# Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
-ncra --dbl -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
-# Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
-ncra --dbl -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
-# Method 1: Obtain ensemble January average by averaging the averages
-ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
-# Method 2: Obtain ensemble January average by averaging the raw data
-# Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
-ncra --dbl -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
-# Difference the two methods
-ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
-# Show differences
-ncks --cdl ~/foo_avg_dff.nc
-# tpt_dbl = 5.6843418860808e-14 ;
-# tpt_flt = 0 ;
-</pre></div>
-<p>The ‘<samp>--dbl</samp>’ switch has no effect on the results computed from
-double-precision inputs.
-But now the two methods produce bit-for-bit identical results from the
-single-precision inputs!
-This is due to the happenstance of rounding along with the effects of
-the ‘<samp>--dbl</samp>’ switch.
-The ‘<samp>--flt</samp>’ and ‘<samp>--rth_flt</samp>’ switches are provided for
-symmetry.
-They enforce the traditional <acronym>NCO</acronym> and Fortran convention of
-keeping single-precision arithmetic in single-precision unless a
-double-precision number is explicitly involved.
-</p>
-<p>We have shown that forced promotion of single- to double-precision
-prior to arithmetic has advantages and disadvantages.
-The primary disadvantages are speed and size.
-Double-precision arithmetic is 10–60% slower than, and requires
-twice the memory of single-precision arithmetic.
-The primary advantage is that rounding errors in double-precision are
-much less likely to accumulate to values near the precision of the
-underlying geophysical variable.
-</p>
-<p>For example, if we know temperature to five significant digits, then a
-rounding error of 1-bit could affect the least precise digit of
-temperature after 1,000–10,000 consecutive one-sided rounding
-errors under the worst possible scenario.
-Many geophysical grids have tens-of-thousands to millions of points
-that must be summed prior to normalization to compute an average.
-It is possible for single-precision rouding errors to accumulate and
-degrade the precision in such situtations.
-Double-precision arithmetic mititgates this problem, so ‘<samp>--dbl</samp>’
-would be warranted.
-</p>
-<a name="index-TREFHT"></a>
-<a name="index-CAM3"></a>
-<a name="index-GCM-2"></a>
-<p>This can be seen with another example, averaging a global surface
-temperature field with <code>ncwa</code>.
-The input contains a single-precision global temperature field
-(stored in <code>TREFHT</code>) produced by the <acronym>CAM3</acronym> general
-circulation model (<acronym>GCM</acronym>) run and stored at 1.9 by 2.5<!-- /@w -->
-degrees resolution.
-This requires 94 latitudes<!-- /@w --> and 144 longitudes<!-- /@w -->, or <em>13,824</em>
-total surface gridpoints, a typical GCM resolution these days.
-These input characteristics are provided only to show the context
-to the interested reader, equivalent results would be found in
-statistics of any dataset of comparable size.
-Models often represent Earth on a spherical grid where global averages
-must be created by weighting each gridcell by its latitude-dependent
-weight (i.e., the Gaussian weight stored in <code>gw</code>), or by the
-surface area of each contributing gridpoint (stored in <code>area</code>).
-</p>
-<p>Like many geophysical models and most <acronym>GCM</acronym>s, <acronym>CAM3</acronym>
-runs completely in double-precision yet stores its archival output in
-single-precision to save space.
-In practice such models usually save multi-dimensional prognostic and
-diagnostic fields (like <code>TREFHT(lat,lon)</code> and <code>area(lat,lon)</code>)
-as single-precision, while saving all one-dimensional coordinates and
-weights (here <code>lat</code>, <code>lon</code>, and <code>gw(lon)</code>) as
-double-precision.
-To obtain pure double-precision arithmetic <em>and</em> storage of the
-globla mean temperature, we first create and store double-precision
-versions of the single-precision fields:
-</p><div class="example">
-<pre class="example">ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc
-</pre></div>
-<p>The single- and double-precision temperatures may each be averaged
-globally using four permutations for the precision of the weight
-and of the intermediate arithmetic representation:
-</p><ol>
-<li> Single-precision weight (<code>area</code>), single-precision arithmetic
-</li><li> Double-precision weight (<code>gw</code>), single-precision arithmetic
-</li><li> Single-precision weight (<code>area</code>), double-precision arithmetic
-</li><li> Double-precision weight (<code>gw</code>), double-precision arithmetic
-</li></ol>
-<div class="example">
-<pre class="example"># NB: Values below are printed with C-format %5.6f using
-# ncks -H -C -s '%5.6f' -v TREFHT,TREFHT_dbl out.nc
-# Single-precision weight (area), single-precision arithmetic
-ncwa --flt -O -a lat,lon -w area in.nc out.nc
-# TREFHT = 289.246735
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), single-precision arithmetic
-ncwa --flt -O -a lat,lon -w gw in.nc out.nc
-# TREFHT = 289.226135
-# TREFHT_dbl = 289.239964
-# Single-precision weight (area), double-precision arithmetic
-ncwa --dbl -O -a lat,lon -w area in.nc out.nc
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), double-precision arithmetic
-ncwa --dbl -O -a lat,lon -w gw in.nc out.nc
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-</pre></div>
-<p>First note that the <code>TREFHT_dbl</code> average never changes because
-<code>TREFHT_dbl(lat,lon)</code> is double-precision in the input file.
-As described above, <acronym>NCO</acronym> automatically converts all operands
-involving to the highest precision involved in the operation.
-So specifying ‘<samp>--dbl</samp>’ is redundant for double-precision inputs.
-</p>
-<p>Second, the single-precision arithmetic averages of the single-precision
-input <code>TREFHT</code> differ by <em>289.246735 - 289.226135 = 0.0206</em>
-from eachother, and, more importantly, by as much as
-<em>289.239964 - 289.226135 = 0.013829</em> from the correct
-(double-precision) answer.
-These averages differ in the fifth digit, i.e., they agree only to four
-significant figures!
-Given that climate scientists are concerned about global temperature
-variations of a tenth of a degree or less, this difference is large.
-It means that the global mean temperature changes scientists are looking
-for are comparable in size to the numerical artifacts produced by the
-averaging procedure.
-</p>
-<a name="index-rounding-1"></a>
-<a name="index-random-walk"></a>
-<p>Why are the single-precision numerical artifacts so large?
-Each global average is the result of multiplying almost 15,000 elements
-each by its weight, summing those, and then dividing by the summed
-weights.
-Thus about 50,000 single-precision floating point operations caused
-the loss of two to three significant digits of precision.
-The net error of a series of independent rounding errors is a random
-walk phenomena
-<a name="DOCF50" href="#FOOT50"><sup>50</sup></a>.
-Successive rounding errors displace the answer further from the truth.
-An ensemble of such averages will, on average, have no net bias.
-In other words, the expectation value of a series of <acronym>IEEE</acronym>
-rounding errors is zero.
-And the error of any given sequence of rounding errors obeys, for large
-series, a Gaussian distribution centered on zero.
-</p>
-<a name="index-mantissa"></a>
-<a name="index-exponent"></a>
-<p>Single-precision numbers use three of their four eight-bit bytes to
-represent the mantissa so the smallest representable single-precision
-mantissa is <em>\epsilon \equiv 2^{-23} = 1.19209 \times 10^{-7}</em>.
-This <em>\epsilon</em> is the smallest <var>x</var> such that
-<em>1.0 + x \ne 1.0</em>.
-This is the rounding error for non-exact precision-numbers.
-Applying random walk theory to rounding, it can be shown that the
-expected rounding error after <var>n</var> inexact operations is
-<em>\sqrt{2n/\pi}</em> for large <var>n</var><!-- /@w -->.
-The expected (i.e., mean absolute) rounding error in our example with
-<em>13,824</em> additions is about
-<em>\sqrt{2 \times 13824 / \pi} = 91.96</em>.
-Hence, addition alone of about fifteen thousand single-precision floats
-is expected to consume about two significant digits of precision.
-This neglects the error due to the inner product (weights times values)
-and normalization (division by tally) aspects of a weighted average.
-the ratio of two numbers each containing a numerical bias can magnify
-the size of the bias.
-In summary, a global mean number computed from about 15,000 gridpoints
-each with weights can be expected to lose up to three significant digits.
-Since single-precision starts with about seven significant digits, we
-should not expect to retain more than four significant digits after
-computing weighted averages in single-precision.
-The above example with <code>TREFHT</code> shows the expected four digits of
-agreement.
-</p>
-<a name="index-beer"></a>
-<p>The <acronym>NCO</acronym> results have been independently validated to the
-extent possible in three other languages:
-C<!-- /@w -->, Matlab, and <acronym>NCL</acronym>.
-C and <acronym>NCO</acronym> are the only languages that permit single-precision
-numbers to be treated with single precision arithmetic:
-</p><div class="example">
-<pre class="example"># Double-precision weight (gw), single-precision arithmetic (C)
-ncwa_3528514.exe
-# TREFHT = 289.240112
-# Double-precision weight (gw), double-precision arithmetic (C)
-# TREFHT = 289.239964
-# Single-precision weight (area), double-precision arithmetic (Matlab)
-# TREFHT = 289.239964
-# Double-precision weight (gw), double-precision arithmetic (Matlab)
-# TREFHT = 289.239964
-# Single-precision weight (area), double-precision arithmetic (NCL)
-ncl < ncwa_3528514.ncl
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), double-precision arithmetic (NCL)
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-</pre></div>
-<p>All languages tested (C, Matlab, <acronym>NCL</acronym>, and <acronym>NCO</acronym>) agree
-to machine precision with double-precision arithmetic.
-Users are fortunate to have a variety of high quality software that
-liberates them from the drudgery of coding their own.
-Many packages are free (as in beer)!
-As shown above <acronym>NCO</acronym> permits one to shift to their
-float-promotion preferences as desired.
-No other language allows this with a simple switch.
-</p>
-<p>To summarize, until version 4.3.6 (September, 2013), the default
-arithmetic convention of <acronym>NCO</acronym> adhered to Fortran behavior,
-and automatically promoted single-precision to double-precision in all
-mixed-precision expressions, and left-alone pure single-precision
-expressions.
-This is faster and more memory efficient than other conventions.
-However, pure single-precision arithmetic can lose too much precision
-when used to condense (e.g., average) large arrays.
-Statistics involving about <em>n = 10,000</em> single-precision inputs
-will lose about 2–3<!-- /@w --> digits if not promoted to double-precision
-prior to arithmetic.
-The loss scales with the squareroot of <var>n</var><!-- /@w -->.
-For larger <var>n</var>, users should promote floats with the ‘<samp>--dbl</samp>’
-option if they want to preserve more than four significant digits in
-their results.
-</p>
-<p>The ‘<samp>--dbl</samp>’ and ‘<samp>--flt</samp>’ switches are only available with the
-<acronym>NCO</acronym> arithmetic operators that could potentially perform more
-than a few single-precision floating point operations per result.
-These are <code>nces</code>, <code>ncra</code>, and <code>ncwa</code>.
-Each is capable of thousands to millions or more operations per result.
-By contrast, the arithmetic operators <code>ncbo</code> and
-<code>ncflint</code> perform at most one floating point operation per
-result.
-Providing the ‘<samp>--dbl</samp>’ option for such trivial operations makes
-little sense, so the option is not currently made available.
-</p>
-<p>We are interested in users’ opinions on these matters.
-The default behavior was changed from ‘<samp>--flt</samp>’ to ‘<samp>--dbl</samp>’
-with the release of <acronym>NCO</acronym> version 4.3.6 (October 2013).
-We will change the default back to ‘<samp>--flt</samp>’ if users prefer.
-Or we could set a threshold (e.g., <em>n \ge 10000</em>) after which
-single- to double-precision promotion is automatically invoked.
-Or we could make the default promotion convention settable via an
-environment variable (<acronym>GSL</acronym> does this a lot).
-Please let us know what you think of the selected defaults and options.
-</p>
-<hr>
-<a name="Manual-type-conversion"></a>
-<div class="header">
-<p>
-Previous: <a href="#Promoting-Single_002dprecision-to-Double" accesskey="p" rel="prev">Promoting Single-precision to Double</a>, Up: <a href="#Type-Conversion" accesskey="u" rel="up">Type Conversion</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Manual-type-conversion-1"></a>
-<h4 class="subsection">3.34.3 Manual type conversion</h4>
-<a name="index-ncap2-2"></a>
-<p><code>ncap2</code> provides intrinsic functions for performing manual type
-conversions.
-This, for example, converts variable <code>tpt</code> to external type
-<code>NC_SHORT</code> (a C-type <code>short</code>), and variable <code>prs</code> to
-external type <code>NC_DOUBLE</code> (a C-type <code>double</code>).
-</p><div class="example">
-<pre class="example">ncap2 -s 'tpt=short(tpt);prs=double(prs)' in.nc out.nc
-</pre></div>
-<p>See <a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a>, for more details.
-</p>
-<a name="ovr"></a> <!-- http://nco.sf.net/nco.html#ovr -->
-<a name="-O"></a> <!-- http://nco.sf.net/nco.html#-O --><hr>
-<a name="Batch-Mode"></a>
-<div class="header">
-<p>
-Next: <a href="#History-Attribute" accesskey="n" rel="next">History Attribute</a>, Previous: <a href="#Type-Conversion" accesskey="p" rel="prev">Type Conversion</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Batch-Mode-1"></a>
-<h3 class="section">3.35 Batch Mode</h3>
-<a name="index-batch-mode"></a>
-<a name="index-overwriting-files-1"></a>
-<a name="index-appending-to-files-1"></a>
-<a name="index-force-overwrite"></a>
-<a name="index-force-append"></a>
-<a name="index-_002dO-1"></a>
-<a name="index-_002dA-1"></a>
-<a name="index-_002d_002doverwrite-1"></a>
-<a name="index-_002d_002dovr-1"></a>
-<a name="index-_002d_002dapn-1"></a>
-<a name="index-_002d_002dappend-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-O</samp>’, ‘<samp>-A</samp>’<br>
-Long options: ‘<samp>--ovr</samp>’, ‘<samp>--overwrite</samp>’, ‘<samp>--apn</samp>’, ‘<samp>--append</samp>’<br>
-</p></td></tr></table>
-<p>If the <var>output-file</var> specified for a command is a pre-existing file,
-then the operator will prompt the user whether to overwrite (erase) the
-existing <var>output-file</var>, attempt to append to it, or abort the
-operation.
-However, interactive questions reduce productivity when processing large
-amounts of data.
-Therefore <acronym>NCO</acronym> also implements two ways to override its own safety
-features, the ‘<samp>-O</samp>’ and ‘<samp>-A</samp>’ switches.
-Specifying ‘<samp>-O</samp>’ tells the operator to overwrite any existing
-<var>output-file</var> without prompting the user interactively.
-Specifying ‘<samp>-A</samp>’ tells the operator to attempt to append to any
-existing <var>output-file</var> without prompting the user interactively.
-These switches are useful in batch environments because they suppress
-interactive keyboard input.
-NB: As of 20120515, <code>ncap2</code> is unable to append to files that
-already contain the appended dimensions.
-</p>
-<a name="hst"></a> <!-- http://nco.sf.net/nco.html#hst -->
-<a name="history"></a> <!-- http://nco.sf.net/nco.html#history -->
-<a name="-h"></a> <!-- http://nco.sf.net/nco.html#-h --><hr>
-<a name="History-Attribute"></a>
-<div class="header">
-<p>
-Next: <a href="#File-List-Attributes" accesskey="n" rel="next">File List Attributes</a>, Previous: <a href="#Batch-Mode" accesskey="p" rel="prev">Batch Mode</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="History-Attribute-1"></a>
-<h3 class="section">3.36 History Attribute</h3>
-<a name="index-history-2"></a>
-<a name="index-timestamp"></a>
-<a name="index-global-attributes-1"></a>
-<a name="index-attributes_002c-global-1"></a>
-<a name="index-_002dh"></a>
-<a name="index-_002d_002dhst"></a>
-<a name="index-_002d_002dhistory"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-h</samp>’<br>
-Long options: ‘<samp>--hst</samp>’, ‘<samp>--history</samp>’<br>
-</p></td></tr></table>
-<p>All operators automatically append a <code>history</code> global attribute to
-any file they create or modify.
-The <code>history</code> attribute consists of a timestamp and the full string
-of the invocation command to the operator, e.g., ‘<samp>Mon May 26 20:10:24
-1997: ncks in.nc foo.nc</samp>’.
-The full contents of an existing <code>history</code> attribute are copied
-from the first <var>input-file</var> to the <var>output-file</var>.
-The timestamps appear in reverse chronological order, with the most
-recent timestamp appearing first in the <code>history</code> attribute.
-Since <acronym>NCO</acronym> and many other netCDF operators adhere to the
-<code>history</code> convention, the entire data processing path of a given
-netCDF file may often be deduced from examination of its <code>history</code>
-attribute.
-As of May, 2002, <acronym>NCO</acronym> is case-insensitive to the spelling
-of the <code>history</code> attribute name.
-Thus attributes named <code>History</code> or <code>HISTORY</code> (which are
-non-standard and not recommended) will be treated as valid history
-attributes.
-When more than one global attribute fits the case-insensitive search
-for “history”, the first one found will be used.
-<code>history</code> attribute
-<a name="index-ncatted-2"></a>
-To avoid information overkill, all operators have an optional switch
-(‘<samp>-h</samp>’, ‘<samp>--hst</samp>’, or ‘<samp>--history</samp>’) to override
-automatically appending the <code>history</code> attribute
-(see <a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a>).
-Note that the ‘<samp>-h</samp>’ switch also turns off writing the
-<code>nco_input_file_list</code> attribute for multi-file operators
-(see <a href="#File-List-Attributes">File List Attributes</a>).
-</p>
-<a name="fl_lst_in_att"></a> <!-- http://nco.sf.net/nco.html#fl_lst_in_att --><hr>
-<a name="File-List-Attributes"></a>
-<div class="header">
-<p>
-Next: <a href="#CF-Conventions" accesskey="n" rel="next">CF Conventions</a>, Previous: <a href="#History-Attribute" accesskey="p" rel="prev">History Attribute</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="File-List-Attributes-1"></a>
-<h3 class="section">3.37 File List Attributes</h3>
-<a name="index-nco_005finput_005ffile_005flist-1"></a>
-<a name="index-nco_005finput_005ffile_005fnumber-1"></a>
-<a name="index-stdin-1"></a>
-<a name="index-global-attributes-2"></a>
-<a name="index-attributes_002c-global-2"></a>
-<a name="index-_002dH"></a>
-<a name="index-_002d_002dfl_005flst_005fin"></a>
-<a name="index-_002d_002dfile_005flist"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>nces</code>, <code>ncecat</code>, <code>ncra</code>, <code>ncrcat</code><br>
-Short options: ‘<samp>-H</samp>’<br>
-Long options: ‘<samp>--fl_lst_in</samp>’, ‘<samp>--file_list</samp>’<br>
-</p></td></tr></table>
-<p>Many methods of specifying large numbers of input file names pass
-these names via pipes, encodings, or argument transfer programs
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-When these methods are used, the input file list is not explicitly
-passed on the command line.
-This results in a loss of information since the <code>history</code>
-attribute no longer contains the exact command by which the file
-was created.
-</p>
-<p><acronym>NCO</acronym> solves this dilemma by archiving input file list
-attributes.
-When the input file list to a multi-file operator is specified
-via <code>stdin</code>, the operator, by default, attaches two global
-attributes to any file they create or modify.
-The <code>nco_input_file_number</code> global attribute contains the number of
-input files, and <code>nco_input_file_list</code> contains the file names,
-specified as standard input to the multi-file operator.
-This information helps to verify that all input files the user thinks
-were piped through <code>stdin</code> actually arrived.
-Without the <code>nco_input_file_list</code> attribute, the information is lost
-forever and the “chain of evidence” would be broken.
-</p>
-<p>The ‘<samp>-H</samp>’ switch overrides (turns off) the default behavior of
-writing the input file list global attributes when input is from
-<code>stdin</code>.
-The ‘<samp>-h</samp>’ switch does this too, and turns off the <code>history</code>
-attribute as well (see <a href="#History-Attribute">History Attribute</a>).
-Hence both switches allows space-conscious users to avoid storing what
-may amount to many thousands of filenames in a metadata attribute.
-</p>
-<a name="CF"></a> <!-- http://nco.sf.net/nco.html#CF -->
-<a name="cnv"></a> <!-- http://nco.sf.net/nco.html#cnv -->
-<a name="cnv_CF"></a> <!-- http://nco.sf.net/nco.html#cnv_CF -->
-<a name="cnv_CCSM"></a> <!-- http://nco.sf.net/nco.html#cnv_CCSM --><hr>
-<a name="CF-Conventions"></a>
-<div class="header">
-<p>
-Next: <a href="#ARM-Conventions" accesskey="n" rel="next">ARM Conventions</a>, Previous: <a href="#File-List-Attributes" accesskey="p" rel="prev">File List Attributes</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="CF-Conventions-1"></a>
-<h3 class="section">3.38 <acronym>CF</acronym> Conventions</h3>
-<a name="index-CF-conventions-4"></a>
-<a name="index-CCSM-conventions"></a>
-<a name="index-UDUnits-2"></a>
-<a name="index-ORO"></a>
-<a name="index-area"></a>
-<a name="index-datesec"></a>
-<a name="index-date"></a>
-<a name="index-gw"></a>
-<a name="index-hyai"></a>
-<a name="index-hyam"></a>
-<a name="index-hybi"></a>
-<a name="index-hybm"></a>
-<a name="index-lat_005fbnds"></a>
-<a name="index-lon_005fbnds"></a>
-<a name="index-msk_005f_002a"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncbo</code>, <code>nces</code>, <code>ncecat</code>,
-<code>ncflint</code>, <code>ncpdq</code>, <code>ncra</code>, <code>ncwa</code><br>
-Short options: None<br>
-</p></td></tr></table>
-<p><acronym>NCO</acronym> recognizes some Climate and Forecast (<acronym>CF</acronym>)
-metadata conventions, and applies special rules to such data.
-<acronym>NCO</acronym> was contemporaneous with <acronym>COARDS</acronym> and still
-contains some rules to handle older <acronym>NCAR</acronym> model datasets, such as
-<acronym>CCM</acronym> and early <acronym>CCSM</acronym> datasets, that pre-date
-<acronym>CF</acronym>.
-Such datasets may not contain an explicit <code>Conventions</code> attribute
-(e.g., ‘<samp>CF-1.0</samp>’).
-Nevertheless, we refer to all such metadata collectively as <acronym>CF</acronym>
-metadata.
-Skip this section if you never work with <acronym>CF</acronym> metadata.
-</p>
-<p>The latest <acronym>CF</acronym> netCDF conventions are described
-<a href="http://cfconventions.org/1.6.html">here</a>.
-Most <acronym>CF</acronym> netCDF conventions are transparent to <acronym>NCO</acronym>
-<a name="DOCF51" href="#FOOT51"><sup>51</sup></a>.
-There are no known pitfalls associated with using any <acronym>NCO</acronym>
-operator on files adhering to these conventions
-<a name="DOCF52" href="#FOOT52"><sup>52</sup></a>.
-However, to facilitate maximum user friendliness, <acronym>NCO</acronym> applies
-special rules to certain variables in <acronym>CF</acronym> files.
-The special functions are not required by the <acronym>CF</acronym> netCDF
-conventions, yet experience shows that they simplify data analysis.
-</p>
-<a name="prc_xcp"></a> <!-- http://nco.sf.net/nco.html#prc_xcp --><p>Currently, <acronym>NCO</acronym> determines whether a datafile is a
-<acronym>CF</acronym> output datafile simply by checking (case-insensitively)
-whether the value of the global attribute <code>Conventions</code> (if any)
-equals ‘<samp>CF-1.0</samp>’ or ‘<samp>NCAR-CSM</samp>’
-Should <code>Conventions</code> equal either of these in the (first)
-<var>input-file</var>, <acronym>NCO</acronym> will apply special rules to certain
-variables because of their usual meaning in <acronym>CF</acronym> files.
-<acronym>NCO</acronym> will not average the following variables often found in
-<acronym>CF</acronym> files:
-<code>ntrm</code>, <code>ntrn</code>, <code>ntrk</code>, <code>ndbase</code>, <code>nsbase</code>,
-<code>nbdate</code>, <code>nbsec</code>, <code>mdt</code>, <code>mhisf</code>.
-These variables contain scalar metadata such as the resolution of the
-host geophysical model and it makes no sense to change their values.
-</p>
-<a name="index-non_002dcoordinate-grid-properties"></a>
-<p>Furthermore, the <em>size and rank-preserving arithmetic operators</em> try
-not to operate on certain grid properties.
-These operators are <code>ncap2</code>, <code>ncbo</code>, <code>nces</code>,
-<code>ncflint</code>, and <code>ncpdq</code> (when used for packing, not for
-permutation).
-These operators do not operate, by default, on (i.e., add, subtract,
-pack, etc.) the following variables:
-<code>ORO</code>,
-<code>area</code>,
-<code>datesec</code>,
-<code>date</code>,
-<code>gw</code>,
-<code>hyai</code>,
-<code>hyam</code>,
-<code>hybi</code>.
-<code>hybm</code>,
-<code>lat_bnds</code>,
-<code>lon_bnds</code>,
-<code>msk_*</code>.
-These variables represent the Gaussian weights, the orography field,
-time fields, hybrid pressure coefficients, and latititude/longitude
-boundaries.
-We call these fields non-coordinate <em>grid properties</em>.
-Coordinate grid properties are easy to identify because they are
-coordinate variables such as <code>latitude</code> and <code>longitude</code>.
-</p>
-<p>Users usually want <em>all</em> grid properties to remain unaltered in the
-output file.
-To be treated as a grid property, the variable name must <em>exactly</em>
-match a name in the above list, or be a coordinate variable.
-The handling of <code>msk_*</code> is exceptional in that <em>any</em> variable
-name beginning with the string <code>msk_</code> is considered to be a
-“mask” and is thus preserved (not operated on arithmetically).
-</p>
-<p>You must spoof <acronym>NCO</acronym> if you would like any grid properties
-or other special <acronym>CF</acronym> fields processed normally.
-For example rename the variables first with <code>ncrename</code>,
-or alter the <code>Conventions</code> attribute.
-</p>
-<a name="cnv_CF_bnd"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_bnd -->
-<a name="bnd"></a> <!-- http://nco.sf.net/nco.html#bnd --><a name="index-bounds-attribute-1"></a>
-<a name="index-bounds-convention"></a>
-<p>As of <acronym>NCO</acronym> version 4.0.8 (April, 2011), <acronym>NCO</acronym>
-supports the <acronym>CF</acronym> <code>bounds</code> convention for cell boundaries
-described
-<a href="http://cfconventions.org/1.6.html#cell-boundaries">here</a>.
-This convention allows coordinate variables (including multidimensional
-coordinates) to describe the boundaries of their cells.
-This is done by naming the variable which contains the bounds in
-in the <code>bounds</code> attribute.
-Note that coordinates of rank <em>N</em> have bounds of rank <em>N+1</em>.
-NCO-generated subsets of <acronym>CF</acronym>-compliant files with <code>bounds</code>
-attributes will include the coordinates specified by the <code>bounds</code>
-attribute, if any.
-Hence the subsets will themselves be <acronym>CF</acronym>-compliant.
-Bounds are subject to the user-specified override switches
-(including ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’) described in
-<a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>.
-</p>
-<a name="cnv_CF_ncl"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_ncl -->
-<a name="ncl"></a> <!-- http://nco.sf.net/nco.html#ncl --><a name="index-ancillary_005fvariables-attribute"></a>
-<a name="index-ancillary-variables-convention"></a>
-<p>As of <acronym>NCO</acronym> version 4.4.5 (July, 2014), <acronym>NCO</acronym>
-supports the <acronym>CF</acronym> <code>ancillary_variables</code> convention for
-described
-<a href="http://cfconventions.org/1.6.html#ancillary-data">here</a>.
-This convention allows ancillary variables to be associated with one or
-more primary variables.
-<acronym>NCO</acronym> attaches any such variables to the extraction list along
-with the primary variable and its usual (one-dimensional) coordinates,
-if any.
-Ancillary variables are subject to the user-specified override switches
-(including ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’) described in
-<a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>.
-</p>
-<a name="cnv_CF_crd"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_crd --><a name="index-coordinates-1"></a>
-<a name="index-coordinates-convention"></a>
-<a name="index-coordinate-variable-2"></a>
-<a name="index-auxiliary-coordinates"></a>
-<a name="index-subsetting-2"></a>
-<a name="index-_002dC-1"></a>
-<a name="index-_002dc-1"></a>
-<a name="index-_002d_002dno_002dcoords-1"></a>
-<a name="index-_002d_002dno_002dcrd-1"></a>
-<a name="index-_002d_002dcoords-1"></a>
-<a name="index-_002d_002dcrd-1"></a>
-<p>As of <acronym>NCO</acronym> version 3.9.6 (January, 2009), <acronym>NCO</acronym>
-supports the <acronym>CF</acronym> <code>coordinates</code> convention described
-<a href="http://cfconventions.org/1.6.html#coordinate-system">here</a>.
-This convention allows variables to specify additional coordinates
-(including multidimensional coordinates) in a space-separated string
-attribute named <code>coordinates</code>.
-<acronym>NCO</acronym> attaches any such coordinates to the extraction list along
-with variable and its usual (one-dimensional) coordinates, if any.
-These auxiliary coordinates are subject to the user-specified override
-switches (including ‘<samp>-c</samp>’ and ‘<samp>-C</samp>’) described in
-<a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>.
-</p>
-<a name="cnv_CF_cll_mth"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_cll_mth -->
-<a name="cll_mth"></a> <!-- http://nco.sf.net/nco.html#cll_mth -->
-<a name="no_cll_mth"></a> <!-- http://nco.sf.net/nco.html#no_cll_mth -->
-<a name="cell_methods"></a> <!-- http://nco.sf.net/nco.html#cell_methods --><a name="index-cell_005fmethods"></a>
-<a name="index-_002d_002dcll_005fmth"></a>
-<a name="index-_002d_002dno_005fcll_005fmth"></a>
-<a name="index-_002d_002dcell_005fmethods"></a>
-<a name="index-_002d_002dno_005fcell_005fmethods"></a>
-<a name="index-cell-methods-convention"></a>
-<p>As of <acronym>NCO</acronym> version 4.4.2 (February, 2014), <acronym>NCO</acronym>
-supports some of the <acronym>CF</acronym> <code>cell_methods</code>
-<a href="http://cfconventions.org/1.6.html#cell-methods">convention</a>
-to describe the analysis procedures that have been applied to data.
-The convention creates (or appends to an existing) <code>cell_methods</code>
-attribute a space-separated list of couplets of the form <var>dmn: op</var>
-where <var>dmn</var> is a comma-separated list of dimensions previously
-contained in the variable that have been reduced by the arithmetic
-operation <var>op</var>.
-For example, the <code>cell_methods</code> value <code>time: mean</code> says that
-the variable in question was averaged over the <code>time</code> dimension.
-In such cases <code>time</code> will either be a scalar variable or a
-degenerate dimension or coordinate.
-This simply means that it has been averaged-over.
-The value <code>time, lon: mean lat: max</code> says that the variable in
-question is the maximum zonal mean of the time averaged original
-variable.
-Which is to say that the variable was first averaged over time and
-longitude, and then the residual latitudinal array was reduced by
-choosing the maximum value.
-Since the <code>cell methods</code> convention may alter metadata in an
-undesirable (or possibly incorrect) fashion, we provide switches
-to ensure it is always or never used.
-Use long-options ‘<samp>--cll_mth</samp>’ or ‘<samp>--cell_methods</samp>’ to invoke the
-algorithm (true by default), and options ‘<samp>--no_cll_mth</samp>’ or
-‘<samp>--no_cell_methods</samp>’ to turn it off.
-These options are only available in the operators <code>ncwa</code> and
-<code>ncra</code>.
-</p>
-<a name="cnv_ARM"></a> <!-- http://nco.sf.net/nco.html#cnv_ARM --><hr>
-<a name="ARM-Conventions"></a>
-<div class="header">
-<p>
-Next: <a href="#Operator-Version" accesskey="n" rel="next">Operator Version</a>, Previous: <a href="#CF-Conventions" accesskey="p" rel="prev">CF Conventions</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ARM-Conventions-1"></a>
-<h3 class="section">3.39 <acronym>ARM</acronym> Conventions</h3>
-<a name="index-ARM-conventions"></a>
-<a name="index-time_005foffset"></a>
-<a name="index-base_005ftime"></a>
-<a name="index-time-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: <code>ncrcat</code><br>
-Short options: None<br>
-</p></td></tr></table>
-<p><code>ncrcat</code> has been programmed to correctly handle data files
-which utilize the Atmospheric Radiation Measurement (<acronym>ARM</acronym>)
-Program <a href="http://www.arm.gov/data/time.stm">convention</a> for
-time and time offsets.
-If you do not work with <acronym>ARM</acronym> data then you may skip this
-section.
-<acronym>ARM</acronym> data files store time information in two variables, a
-scalar, <code>base_time</code>, and a record variable, <code>time_offset</code>.
-Subtle but serious problems can arise when these type of files are
-just blindly concatenated.
-Therefore <code>ncrcat</code> has been specially programmed to be able to
-chain together consecutive <acronym>ARM</acronym> <var>input-files</var> and produce
-and an <var>output-file</var> which contains the correct time information.
-Currently, <code>ncrcat</code> determines whether a datafile is an
-<acronym>ARM</acronym> datafile simply by testing for the existence of the
-variables <code>base_time</code>, <code>time_offset</code>, and the dimension
-<code>time</code>.
-If these are found in the <var>input-file</var> then <code>ncrcat</code> will
-automatically perform two non-standard, but hopefully useful,
-procedures.
-First, <code>ncrcat</code> will ensure that values of <code>time_offset</code>
-appearing in the <var>output-file</var> are relative to the <code>base_time</code>
-appearing in the first <var>input-file</var> (and presumably, though not
-necessarily, also appearing in the <var>output-file</var>).
-Second, if a coordinate variable named <code>time</code> is not found in the
-<var>input-files</var>, then <code>ncrcat</code> automatically creates the
-<code>time</code> coordinate in the <var>output-file</var>.
-The values of <code>time</code> are defined by the <acronym>ARM</acronym> conventions
-<em><var>time</var> = <var>base_time</var> + <var>time_offset</var></em>.
-Thus, if <var>output-file</var> contains the <code>time_offset</code>
-variable, it will also contain the <code>time</code> coordinate.
-<a name="index-history-3"></a>
-<a name="index-global-attributes-3"></a>
-<a name="index-attributes_002c-global-3"></a>
-A short<!-- /@w --> message is added to the <code>history</code> global attribute
-whenever these <acronym>ARM</acronym>-specific procedures are executed.
-</p>
-<a name="vrs"></a> <!-- http://nco.sf.net/nco.html#vrs -->
-<a name="version"></a> <!-- http://nco.sf.net/nco.html#version --><hr>
-<a name="Operator-Version"></a>
-<div class="header">
-<p>
-Previous: <a href="#ARM-Conventions" accesskey="p" rel="prev">ARM Conventions</a>, Up: <a href="#Shared-features" accesskey="u" rel="up">Shared features</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Operator-Version-1"></a>
-<h3 class="section">3.40 Operator Version</h3>
-<a name="index-version"></a>
-<a name="index-RCS"></a>
-<a name="index-_002dr-2"></a>
-<a name="index-_002d_002drevision-1"></a>
-<a name="index-_002d_002dversion-1"></a>
-<a name="index-_002d_002dvrs-1"></a>
-<table class="cartouche" border="1"><tr><td>
-<p>Availability: All operators<br>
-Short options: ‘<samp>-r</samp>’<br>
-Long options: ‘<samp>--revision</samp>’, ‘<samp>--version</samp>’, or ‘<samp>--vrs</samp>’<br>
-</p></td></tr></table>
-<p>All operators can be told to print their version information,
-library version, copyright notice, and compile-time configuration
-with the ‘<samp>-r</samp>’ switch, or its long-option equivalent
-‘<samp>revision</samp>’.
-The ‘<samp>--version</samp>’ or ‘<samp>--vrs</samp>’ switches print the operator
-version information only.
-The internal version number varies between operators, and indicates the
-most recent change to a particular operator’s source code.
-This is useful in making sure you are working with the most recent
-operators.
-The version of <acronym>NCO</acronym> you are using might be, e.g., <code>3.9.5</code>.
-Using ‘<samp>-r</samp>’ on, say, <code>ncks</code>, produces something like
-‘<samp>NCO netCDF Operators version "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by zender
-Copyright (C) 1995--2008 Charlie Zender
-ncks version 20090918</samp>’.
-This tells you that <code>ncks</code> contains all patches up to version
-<code>3.9.5</code>, which dates from May 11<!-- /@w -->, 2008.
-<a name="rfr"></a> <!-- http://nco.sf.net/nco.html#rfr --></p><hr>
-<a name="Reference-Manual"></a>
-<div class="header">
-<p>
-Next: <a href="#Contributing" accesskey="n" rel="next">Contributing</a>, Previous: <a href="#Shared-features" accesskey="p" rel="prev">Shared features</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Reference-Manual-1"></a>
-<h2 class="chapter">4 Reference Manual</h2>
-
-<p>This chapter presents reference pages for each of the operators
-individually.
-The operators are presented in alphabetical order.
-<a name="index-command-line-switches-3"></a>
-All valid command line switches are included in the syntax statement.
-Recall that descriptions of many of these command line switches are
-provided only in <a href="#Shared-features">Shared features</a>, to avoid redundancy.
-Only options specific to, or most useful with, a particular operator are
-described in any detail in the sections below.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="1">ncap2 netCDF Arithmetic Processor</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncatted-netCDF-Attribute-Editor" accesskey="2">ncatted netCDF Attribute Editor</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncbo-netCDF-Binary-Operator" accesskey="3">ncbo netCDF Binary Operator</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#nces-netCDF-Ensemble-Statistics" accesskey="4">nces netCDF Ensemble Statistics</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncecat-netCDF-Ensemble-Concatenator" accesskey="5">ncecat netCDF Ensemble Concatenator</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncflint-netCDF-File-Interpolator" accesskey="6">ncflint netCDF File Interpolator</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncks-netCDF-Kitchen-Sink" accesskey="7">ncks netCDF Kitchen Sink</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly" accesskey="8">ncpdq netCDF Permute Dimensions Quickly</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncra-netCDF-Record-Averager" accesskey="9">ncra netCDF Record Averager</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="ncap"></a> <!-- http://nco.sf.net/nco.html#ncap -->
-<a name="ncap2"></a> <!-- http://nco.sf.net/nco.html#ncap2 --><hr>
-<a name="ncap2-netCDF-Arithmetic-Processor"></a>
-<div class="header">
-<p>
-Next: <a href="#ncatted-netCDF-Attribute-Editor" accesskey="n" rel="next">ncatted netCDF Attribute Editor</a>, Previous: <a href="#Reference-Manual" accesskey="p" rel="prev">Reference Manual</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncap2-netCDF-Arithmetic-Processor-1"></a>
-<h3 class="section">4.1 <code>ncap2</code> netCDF Arithmetic Processor</h3>
-<a name="index-parser"></a>
-<a name="index-lexer"></a>
-<a name="index-arithmetic-processor"></a>
-<a name="index-ncap"></a>
-<a name="index-ncap2-5"></a>
-<table class="cartouche" border="1"><tr><td>
-<p><code>ncap2</code> understands a relatively full-featured
-language of operations, including loops, conditionals, arrays,
-and math functions.
-<code>ncap2</code> is the most rapidly changing <acronym>NCO</acronym> operator and
-its documentation is incomplete.
-The distribution file <samp>data/ncap2_tst.nco</samp> contains an up-to-date
-overview of its syntax and capabilities.
-The <samp>data/*.nco</samp> distribution files (especially
-<samp>bin_cnt.nco</samp>, <samp>psd_wrf.nco</samp>, and <samp>rgr.nco</samp>) contain
-in-depth examples of <code>ncap2</code> solutions to complex problems.
-</p></td></tr></table>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncap2 [-3] [-4] [-6] [-7] [<a href="http://nco.sf.net/nco.html#-A">-A</a>] [-C] [-c]
-[-D <var>dbg</var>] [-F] [-f] [-h] [--hdf] [--hdr_pad <var>nbr</var>] [-L <var>dfl_lvl</var>] [-l <var>path</var>]
-[--no_tmp_fl] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-[-s <var>algebra</var>] [-S <var>fl.nco</var>] [-t <var>thr_nbr</var>] [-v]
-<var>input-file</var> [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncap2</code> arithmetically processes netCDF files
-<a name="DOCF53" href="#FOOT53"><sup>53</sup></a>.
-<a name="index-script-file"></a>
-<a name="index-_002d_002dscript_002dfile"></a>
-<a name="index-_002d_002dfl_005fspt"></a>
-<a name="index-_002d_002dscript"></a>
-<a name="index-_002d_002dspt"></a>
-The processing instructions are contained either in the <acronym>NCO</acronym>
-script file <samp>fl.nco</samp> or in a sequence of command line arguments.
-The options ‘<samp>-s</samp>’ (or long options ‘<samp>--spt</samp>’ or ‘<samp>--script</samp>’)
-are used for in-line scripts and ‘<samp>-S</samp>’ (or long options
-‘<samp>--fl_spt</samp>’ or ‘<samp>--script-file</samp>’) are used to provide the
-filename where (usually multiple) scripting commands are pre-stored.
-<code>ncap2</code> was written to perform arbitrary algebraic
-transformations of data and archive the results as easily as possible.
-<a name="index-derived-fields"></a>
-See <a href="#Missing-Values">Missing Values</a>, for treatment of missing values.
-The results of the algebraic manipulations are called
-<em>derived fields</em>.
-</p>
-<p>Unlike the other operators, <code>ncap2</code> does not accept a list of
-variables to be operated on as an argument to ‘<samp>-v</samp>’
-(see <a href="#Subsetting-Files">Subsetting Files</a>).
-Rather, the ‘<samp>-v</samp>’ switch takes no arguments and indicates
-that <code>ncap2</code> should output <em>only</em> user-defined variables.
-<code>ncap2</code> neither accepts nor understands the <var>-x</var> switch.
-<a name="index-appending-variables-2"></a>
-NB: As of 20120515, <code>ncap2</code> is unable to append to files that
-already contain the appended dimensions.
-</p>
-
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Syntax-of-ncap2-statements" accesskey="1">Syntax of ncap2 statements</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Expressions" accesskey="2">Expressions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Dimensions" accesskey="3">Dimensions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Left-hand-casting" accesskey="4">Left hand casting</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Arrays-and-hyperslabs" accesskey="5">Arrays and hyperslabs</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Attributes" accesskey="6">Attributes</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Number-literals" accesskey="7">Number literals</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#if-statement" accesskey="8">if statement</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#print-statement" accesskey="9">print statement</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Missing-values-ncap2">Missing values ncap2</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Methods-and-functions">Methods and functions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#RAM-variables">RAM variables</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Where-statement">Where statement</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Loops">Loops</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Include-files">Include files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Sort-methods">Sort methods</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Irregular-grids">Irregular grids</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Bilinear-interpolation">Bilinear interpolation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#GSL-special-functions">GSL special functions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#GSL-interpolation">GSL interpolation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#GSL-least_002dsquares-fitting">GSL least-squares fitting</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#GSL-statistics">GSL statistics</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#GSL-random-number-generation">GSL random number generation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Examples-ncap2">Examples ncap2</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Operator-precedence-and-associativity">Operator precedence and associativity </a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#ID-Quoting">ID Quoting</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="att_prp"></a> <!-- http://nco.sf.net/nco.html#att_prp --><p>Defining new variables in terms of existing variables is a powerful
-feature of <code>ncap2</code>.
-<a name="index-derived-fields-1"></a>
-Derived fields inherit the metadata (i.e., attributes) of their
-ancestors, if any, in the script or input file.
-When the derived field is completely new (no identically-named ancestors
-exist), then it inherits the metadata (if any) of the left-most variable
-on the right hand side of the defining expression.
-This metadata inheritance is called <em>attribute propagation</em>.
-Attribute propagation is intended to facilitate well-documented
-data analysis, and we welcome suggestions to improve this feature.
-</p>
-<p>The only exception to this rule of attribute propagation is in cases of
-left hand casting (see <a href="#Left-hand-casting">Left hand casting</a>).
-The user must manually define the proper metadata for variables defined
-using left hand casting.
-</p>
-<a name="syn"></a> <!-- http://nco.sf.net/nco.html#syn --><hr>
-<a name="Syntax-of-ncap2-statements"></a>
-<div class="header">
-<p>
-Next: <a href="#Expressions" accesskey="n" rel="next">Expressions</a>, Previous: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="p" rel="prev">ncap2 netCDF Arithmetic Processor</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Syntax-of-ncap2-statements-1"></a>
-<h4 class="subsection">4.1.1 Syntax of <code>ncap2</code> statements</h4>
-<a name="index-statement"></a>
-<a name="index-syntax"></a>
-<p>Mastering <code>ncap2</code> is relatively simple.
-Each valid statement <var>statement</var> consists of standard forward
-algebraic expression.
-The <samp>fl.nco</samp>, if present, is simply a list of such statements,
-whitespace, and comments.
-<a name="index-C-language-4"></a>
-The syntax of statements is most like the computer language C<!-- /@w -->.
-The following characteristics of C<!-- /@w --> are preserved:
-</p><dl compact="compact">
-<dt>Array syntax</dt>
-<dd><a name="index-array-syntax"></a>
-<a name="index-_005b_005d-_0028array-delimiters_0029"></a>
-<p>Arrays elements are placed within <code>[]</code> characters;
-</p></dd>
-<dt>Array indexing</dt>
-<dd><a name="index-array-indexing"></a>
-<p>Arrays are 0-based;
-</p></dd>
-<dt>Array storage</dt>
-<dd><a name="index-array-storage"></a>
-<p>Last dimension is most rapidly varying;
-</p></dd>
-<dt>Assignment statements</dt>
-<dd><a name="index-assignment-statement"></a>
-<a name="index-semi_002dcolon"></a>
-<a name="index-_003b-_0028end-of-statement_0029"></a>
-<p>A semi<!-- /@w -->-colon ‘<samp>;</samp>’ indicates the end of an assignment statement.
-</p></dd>
-<dt>Comments</dt>
-<dd><a name="index-comments"></a>
-<a name="index-_002f_002a_002e_002e_002e_002a_002f-_0028comment_0029"></a>
-<a name="index-_002f_002f-_0028comment_0029"></a>
-<p>Multi-line comments are enclosed within <code>/* */</code> characters.
-Single line comments are preceded by <code>//</code> characters.
-</p></dd>
-<dt>Nesting</dt>
-<dd><a name="index-including-files"></a>
-<a name="index-nesting"></a>
-<a name="index-_0023include"></a>
-<p>Files may be nested in scripts using <code>#include <var>script</var></code>.
-Note that the <code>#include</code> command is not followed by a semi-colon
-because it is a pre-processor directive, not an assignment statement.
-The filename <samp>script</samp> is interpreted relative to the run directory.
-</p></dd>
-<dt>Attribute syntax</dt>
-<dd><a name="index-attribute-syntax"></a>
-<a name="index-_0040-_0028attribute_0029"></a>
-<p>The at-sign <code>@</code> is used to delineate an attribute name from a
-variable name.
-</p></dd>
-</dl>
-
-<a name="ncap_xpr"></a> <!-- http://nco.sf.net/nco.html#ncap_xpr --><hr>
-<a name="Expressions"></a>
-<div class="header">
-<p>
-Next: <a href="#Dimensions" accesskey="n" rel="next">Dimensions</a>, Previous: <a href="#Syntax-of-ncap2-statements" accesskey="p" rel="prev">Syntax of ncap2 statements</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="index-expressions"></a>
-<a name="Expressions-1"></a>
-<h4 class="subsection">4.1.2 Expressions</h4>
-<p>Expressions are the fundamental building block of <code>ncap2</code>.
-Expressions are composed of variables, numbers, literals, and
-attributes.
-<a name="index-C-language-5"></a>
-The following C operators<!-- /@w --> are “overloaded” and work with scalars
-and multi-dimensional arrays:
-</p><div class="example">
-<pre class="example">Arithmetic Operators: * / % + - ^
-Binary Operators: > >= < <= == != == || && >> <<
-Unary Operators: + - ++ -- !
-Conditional Operator: exp1 ? exp2 : exp3
-Assign Operators: = += -= /= *=
-</pre></div>
-
-<p>In the following section a <em>variable</em> also refers to a
-number literal which is read in as a scalar variable:
-</p>
-<p><strong>Arithmetic and Binary Operators </strong>
-</p>
-<p>Consider <em>var1 ’op’ var2</em>
-</p>
-<p><strong>Precision</strong>
-</p><ul>
-<li> When both operands are variables, the result has the precision of the higher precision operand.
-</li><li> When one operand is a variable and the other an attribute, the result has the precision of the variable.
-</li><li> When both operands are attributes, the result has the precision of the more precise attribute.
-</li><li> The exponentiation operator “^” is an exception to the above rules.
-When both operands have type less than <code>NC_FLOAT</code>, the result is <code>NC_FLOAT</code>.
-When either type is <code>NC_DOUBLE</code>, the result is also <code>NC_DOUBLE</code>.
-</li></ul>
-
-<a name="index-broadcasting-variables"></a>
-<a name="index-rank"></a>
-<p><strong>Rank</strong>
-</p><ul>
-<li> The Rank of the result is generally equal to Rank of the operand
-that has the greatest number of dimensions.
-</li><li> If the dimensions in var2 are a subset of the dimensions in var1
-then its possible to make var2 conform to var1 through broadcasting and
-or dimension reordering.
-</li><li> Broadcasting a variable means creating data in non-existing
-dimensions by copying data in existing dimensions.
-</li><li> More specifically: If the numbers of dimensions in var1 is greater
-than or equal to the number of dimensions in var2 then an attempt is
-made to make var2 conform to var1 ,else var1 is made to conform to
-var2. If conformance is not possible then an error message will be
-emitted and script execution will cease.<br>
-</li></ul>
-
-<p>Even though the logical operators return True(1) or False(0)
-they are treated in the same way as the arithmetic operators with regard
-to precision and rank.<br>
-Examples:
-</p>
-<div class="example">
-<pre class="verbatim">dimensions: time=10, lat=2, lon=4
-Suppose we have the two variables:
-
-double P(time,lat,lon);
-float PZ0(lon,lat); // PZ0=1,2,3,4,5,6,7,8;
-
-Consider now the expression:
- PZ=P-PZ0
-
-PZ0 is made to conform to P and the result is
-PZ0 =
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
-
-Once the expression is evaluated then PZ will be of type double;
-
-Consider now
- start=four-att_var at double_att; // start =-69 and is of type intger;
- four_pow=four^3.0f // four_pow=64 and is of type float
- three_nw=three_dmn_var_sht*1.0f; // type is now float
- start at n1=att_var at short_att*att_var at int_att;
- // start at n1=5329 and is type int
-</pre></div>
-
-<p><strong>Binary Operators</strong> <br>
-<a name="index-binary-Operators"></a>
-Unlike C the binary operators return an array of values.
-There is no such thing as short circuiting with the AND/OR operators.
-Missing values are carried into the result in the same way they are with
-the arithmetic operators.
-When an expression is evaluated in an if() the missing values are
-treated as true.<br>
-The binary operators are, in order of precedence:
-</p><div class="example">
-<pre class="example">
-! Logical Not
-----------------------------
-<< Less Than Selection
->> Greater Than Selection
-----------------------------
-> Greater than
->= Greater than or equal to
-< Less than
-<= Less than or equal to
-----------------------------
-== Equal to
-!= Not equal to
-----------------------------
-&& Logical AND
-----------------------------
-|| Logical OR
-----------------------------
-</pre></div>
-
-<p>To see all operators: see <a href="#Operator-precedence-and-associativity">Operator precedence and associativity</a>
-Examples:
-</p><div class="example">
-<pre class="example">tm1=time>2 && time <7; // tm1=0, 0, 1, 1, 1, 1, 0, 0, 0, 0 double
-tm2=time==3 || time>=6; // tm2=0, 0, 1, 0, 0, 1, 1, 1, 1, 1 double
-tm3=int(!tm1); // tm3=1, 1, 0, 0, 0, 0, 1, 1, 1, 1 int
-tm4=tm1 && tm2; // tm4=0, 0, 1, 0, 0, 1, 0, 0, 0, 0 double
-tm5=!tm4; // tm5=1, 1, 0, 1, 1, 0, 1, 1, 1, 1 double
-</pre></div>
-
-<p><strong>Regular Assign Operator</strong><br>
-<em>var1 ’=’ exp1</em> <br>
-If var1 does not already exist in Output then var1 is written to Output with the values and dimensions from expr1. If var1 already exists in Output, then the only requirement on expr1 is that the number of elements must match the number already on disk. The type of expr1 is converted if necessary to the disk type.
-</p>
-<p><strong> Other Assign Operators +=,-=,*=./= </strong><br>
- <em>var1 ’ass_op’ exp1 </em><br>
-if exp1 is a variable and it doesn’t conform to var1 then an attempt is made to make it conform to var1. If exp1 is an attribute it must have unity size or else have the same number of elements as var1. If expr1 has a different type to var1 the it is converted to the var1 type.
-</p><div class="example">
-<pre class="example">z1=four+=one*=10 // z1=14 four=14 one=10;
-time-=2 // time= -1,0,1,2,3,4,5,6,7,8
-</pre></div>
-
-<p><strong>Increment/Decrement Operators <br></strong>
-These work in a similar fashion to their regular C counterparts. If say the variable <code>four</code> is input only then the statement <code>++four</code> effectively means read <code>four</code> from input increment each element by one, then write the new values to Output;
-</p>
-<p>Example:
-</p><div class="example">
-<pre class="example">n2=++four; n2=5, four=5
-n3=one--+20; n3=21 one=0;
-n4=--time; n4=time=0.,1.,2.,3.,4.,5.,6.,7.,8.,9.;
-</pre></div>
-
-<p><strong>Conditional Operator ?: </strong> <br>
-<a name="index-conditional-Operator"></a>
-<em>exp1 ? exp2 : exp3 </em> <br>
-The conditional operator (or ternary Operator) is a succinct way
-of writing an if/then/else. If exp1 evaluates to true then exp2 is
-returned else exp3 is returned.
-</p>
-<p>Example:
-</p><div class="example">
-<pre class="verbatim">weight_avg=weight.avg();
-weight_avg at units= (weight_avg == 1 ? "kilo" : "kilos");
-PS_nw=PS-(PS.min() > 100000 ? 100000 : 0);
-</pre></div>
-
-<a name="clp"></a> <!-- http://nco.sf.net/nco.html#clp -->
-<a name="clipping"></a> <!-- http://nco.sf.net/nco.html#clipping --><p><strong>Clipping Operators</strong>
-<a name="index-clipping-operators"></a>
-</p><dl compact="compact">
-<dt><< Less-than Clipping<br></dt>
-<dd><p>For arrays, the less-than selection operator selects all values in the
-left operand that are less than the corresponding value in the right
-operand.
-If the value of the left side is greater than or equal to the
-corresponding value of the right side, then the right side value is
-placed in the result
-</p></dd>
-<dt>>> Greater-than Clipping<br></dt>
-<dd><p>For arrays, the greater-than selection operator selects all values in
-the left operand that are greater than the corresponding value in the
-right operand.
-If the value of the left side is less than or equal to the corresponding
-value of the right side, then the right side value is placed in the
-result.
-</p></dd>
-</dl>
-
-<p>Example:
-</p><div class="example">
-<pre class="example">RDM2=RDM >> 100.0 // 100,100,100,100,126,126,100,100,100,100 double
-RDM2=RDM << 90s // 1, 9, 36, 84, 90, 90, 84, 36, 9, 1 int
-</pre></div>
-
-<a name="ncap_dims"></a> <!-- http://nco.sf.net/nco.html#ncap_dims -->
-<a name="defdim"></a> <!-- http://nco.sf.net/nco.html#defdim --><hr>
-<a name="Dimensions"></a>
-<div class="header">
-<p>
-Next: <a href="#Left-hand-casting" accesskey="n" rel="next">Left hand casting</a>, Previous: <a href="#Expressions" accesskey="p" rel="prev">Expressions</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Dimensions-1"></a>
-<h4 class="subsection">4.1.3 Dimensions</h4>
-<a name="index-defining-dimensions-in-ncap2"></a>
-<a name="index-defdim_0028_0029"></a>
-<p>Dimensions are defined in Output using the <code>defdim()</code> function.
-</p><div class="example">
-<pre class="example">defdim("cnt",10); # Dimension size is fixed by default
-defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dimension)
-defdim("cnt",10,0); # Dimension is unlimited (record dimension)
-defdim("cnt",10,1); # Dimension size is fixed
-defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed
-</pre></div>
-
-<p>This dimension name must then be prefixed with a dollar-sign ‘<samp>$</samp>’
-when referred to in method arguments or left-hand-casting, e.g.,
-</p><div class="example">
-<pre class="example">new_var[$cnt]=time;
-temperature[$time,$lat,$lon]=35.5;
-temp_avg=temperature.avg($time);
-</pre></div>
-
-<p>The <code>size</code> method allows the dimension size to be used in an
-arithmetic expression:
-</p><div class="example">
-<pre class="example">time_avg=time.total() / $time.size;
-</pre></div>
-
-<p>Increase the size of a new variable by one and set new member to zero:
-</p><div class="example">
-<pre class="example">defdim("cnt_new",$cnt.size+1);
-new_var[$cnt_new]=0.0;
-new_var(0:($cnt_new.size-2))=old_var;
-</pre></div>
-
-<p><strong>Dimension Abbreviations <br></strong>
-It is possible to use dimension abbreviations as method arguments:<br>
-<code>$0</code> is the first dimension of a variable<br>
-<code>$1</code> is the second dimension of a variable<br>
-<code>$n</code> is the n+1 dimension of a variable<br>
-</p>
-<div class="example">
-<pre class="example">float four_dmn_rec_var(time,lat,lev,lon);
-double three_dmn_var_dbl(time,lat,lon);
-
-four_nw=four_dmn_rev_var.reverse($time,$lon)
-four_nw=four_dmn_rec_var.reverse($0,$3);
-
-four_avg=four_dmn_rec_var.avg($lat,$lev);
-four_avg=four_dmn_rec_var.avg($1,$2);
-
-three_mw=three_dmn_var_dbl.permute($time,$lon,$lat);
-three_mw=three_dmn_var_dbl.permute($0,$2,$1);
-</pre></div>
-
-<p><strong>ID Quoting <br></strong>
-If the dimension name contains non-regular characters use ID quoting.
-See see <a href="#ID-Quoting">ID Quoting</a>
-</p><div class="example">
-<pre class="example">defdim("a--list.A",10);
-A1['$a--list.A']=30.0;
-</pre></div>
-
-<p><strong>GOTCHA <br></strong>
-It is not possible to manually define in Output any dimensions that exist in Input. When a variable from Input appears in an expression or statement its dimensions in Input are automagically copied to Output (if they are not already present)
-</p>
-<a name="lhc"></a> <!-- http://nco.sf.net/nco.html#lhc -->
-<a name="lhs"></a> <!-- http://nco.sf.net/nco.html#lhs --><hr>
-<a name="Left-hand-casting"></a>
-<div class="header">
-<p>
-Next: <a href="#Arrays-and-hyperslabs" accesskey="n" rel="next">Arrays and hyperslabs</a>, Previous: <a href="#Dimensions" accesskey="p" rel="prev">Dimensions</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Left-hand-casting-1"></a>
-<h4 class="subsection">4.1.4 Left hand casting</h4>
-<a name="index-hybrid-coordinate-system"></a>
-<a name="index-left-hand-casting-1"></a>
-<a name="index-LHS"></a>
-<p>The following examples demonstrate the utility of the
-<em>left hand casting</em> ability of <code>ncap2</code>.
-Consider first this simple, artificial, example.
-If <var>lat</var> and <var>lon</var> are one dimensional coordinates of
-dimensions <var>lat</var> and <var>lon</var>, respectively, then addition
-of these two one-dimensional arrays is intrinsically ill-defined because
-whether <var>lat_lon</var> should be dimensioned <var>lat</var> by <var>lon</var>
-or <var>lon</var> by <var>lat</var> is ambiguous (assuming that addition is to
-remain a <em>commutative</em> procedure, i.e., one that does not depend on
-the order of its arguments).
-Differing dimensions are said to be <em>orthogonal</em> to one another,
-and sets of dimensions which are mutually exclusive are orthogonal
-as a set and any arithmetic operation between variables in orthogonal
-dimensional spaces is ambiguous without further information.
-</p>
-<p>The ambiguity may be resolved by enumerating the desired dimension
-ordering of the output expression inside square brackets on the
-left hand side (<acronym>LHS</acronym>) of the equals sign.
-This is called <em>left hand casting</em> because the user resolves the
-dimensional ordering of the <acronym>RHS</acronym> of the expression by
-specifying the desired ordering on the <acronym>LHS</acronym>.
-</p><div class="example">
-<pre class="example">ncap2 -s 'lat_lon[lat,lon]=lat+lon' in.nc out.nc
-ncap2 -s 'lon_lat[lon,lat]=lat+lon' in.nc out.nc
-</pre></div>
-<p>The explicit list of dimensions on the <acronym>LHS</acronym>, <code>[lat,lon]</code>
-resolves the otherwise ambiguous ordering of dimensions in
-<var>lat_lon</var>.
-In effect, the <acronym>LHS</acronym> <em>casts</em> its rank properties onto the
-<acronym>RHS</acronym>.
-Without <acronym>LHS</acronym> casting, the dimensional ordering of <var>lat_lon</var>
-would be undefined and, hopefully, <code>ncap2</code> would print an error
-message.
-</p>
-<p>Consider now a slightly more complex example.
-In geophysical models, a coordinate system based on
-a blend of terrain-following and density-following surfaces is
-called a <em>hybrid coordinate system</em>.
-In this coordinate system, four variables must be manipulated to
-obtain the pressure of the vertical coordinate:
-<var>PO</var> is the domain-mean surface pressure offset (a scalar),
-<var>PS</var> is the local (time-varying) surface pressure (usually two
-horizontal spatial dimensions, i.e. latitude by longitude), <var>hyam</var>
-is the weight given to surfaces of constant density (one spatial
-dimension, pressure, which is orthogonal to the horizontal
-dimensions), and <var>hybm</var> is the weight given to surfaces of
-constant elevation (also one spatial dimension).
-This command constructs a four-dimensional pressure <code>prs_mdp</code>
-from the four input variables of mixed rank and orthogonality:
-</p><div class="example">
-<pre class="example">ncap2 -s 'prs_mdp[time,lat,lon,lev]=P0*hyam+PS*hybm' in.nc out.nc
-</pre></div>
-<p>Manipulating the four fields which define the pressure in a hybrid
-coordinate system is easy with left hand casting.
-</p>
-<a name="ncap_arr"></a> <!-- http://nco.sf.net/nco.html#ncap_arr --><hr>
-<a name="Arrays-and-hyperslabs"></a>
-<div class="header">
-<p>
-Next: <a href="#Attributes" accesskey="n" rel="next">Attributes</a>, Previous: <a href="#Left-hand-casting" accesskey="p" rel="prev">Left hand casting</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Arrays-and-hyperslabs-1"></a>
-<h4 class="subsection">4.1.5 Arrays and hyperslabs</h4>
-
-<a name="index-array"></a>
-<a name="index-array-function"></a>
-<a name="index-arrays"></a>
-<a name="index-findgen_002dequivalent"></a>
-<a name="index-indgen_002dequivalent"></a>
-<p>Generating a regularly spaced one-dimensional array with <code>ncap2</code>
-is simple with the <code>array()</code> function.
-The syntax is
-</p><div class="example">
-<pre class="example">var_out=array(val_srt,val_ncr,$dmn_nm); // One-dimensional output
-var_out=array(val_srt,val_ncr,var_tpl); // Multi-dimensional output
-</pre></div>
-<p>where the arguments are the starting value <var>val_srt</var>,
-incremental value <var>val_ncr</var>, and, for one-dimensional output, the
-single dimension <code>$dmn_nm</code>, or, for multi-dimensional output, a
-template variable <code>var_tpl</code>, i.e., a variable with the same shape
-as the desired output.
-The type of <code>var_out</code> will be the same as <code>val_srt</code>.
-Be sure to encode this type with the appropriate decimal point
-and floating point suffix when <code>val_srt</code> is a “naked constant”
-rather than a variable.
-For example, to produce an array of shorts (signed two-byte integers),
-integers (signed four-byte integers), unsigned 64-bit integers,
-floats, or doubles use
-</p><div class="example">
-<pre class="example">var_out=array(1s,val_ncr,$dmn_nm); // NC_SHORT array
-var_out=array(1,val_ncr,$dmn_nm); // NC_INT array
-var_out=array(1ull,val_ncr,$dmn_nm); // NC_UINT64 array
-var_out=array(1f,val_ncr,$dmn_nm); // NC_FLOAT array
-var_out=array(1.,val_ncr,$dmn_nm); // NC_DOUBLE array
-</pre></div>
-
-<p>Once the associated dimensions have been defined, the start and
-increment arguments may be supplied as values, mathmatical expressions,
-or variables:
-</p><div class="example">
-<pre class="example">var_out=array(1,1,$time); // 1,2,3,4,5,6,7,8,9,10
-var_out=array(1+2-2,one,$time); // 1,2,3,4,5,6,7,8,9,10
-var_out=array(1,2,three_dmn_rec_var); // 1,3,5,...155,157,159
-</pre></div>
-
-<a name="index-hyperslabs"></a>
-<p>Hyperslabs in <code>ncap2</code> are more limited than hyperslabs with the
-other <acronym>NCO</acronym> operators.
-<code>ncap2</code> does not understand the shell command-line syntax
-used to specify multi-slabs, wrapped co-ordinates, negative stride or
-coordinate value limits.
-However with a bit of syntactic magic they are all are possible.
-<code>ncap2</code> accepts (in fact, it requires) <var>N</var>-hyperslab
-arguments for a variable of rank <var>N</var>:
-</p><div class="example">
-<pre class="example">var1(arg1,arg2 ... argN);
-</pre></div>
-<p>where each hyperslab argument is of the form
-</p><div class="example">
-<pre class="example">start:end:stride
-</pre></div>
-<p>and the arguments for different dimensions are separated by commas.
-If <var>start</var> is omitted, it defaults to zero.
-If <var>end</var> is omitted, it defaults to dimension size minus one.
-If <var>stride</var> is omitted, it defaults to one.
-</p><br>
-<p>If a single value is present then it is assumed that that
-dimension collapses to a single value (i.e., a cross-section).
-The number of hyperslab arguments MUST equal the variable’s rank.
-</p><br>
-
-<p><strong>Hyperslabs on the Right Hand Side of an assign<br></strong>
-</p>
-<p>A simple 1D example:
-</p><div class="example">
-<pre class="verbatim">($time.size=10)
-od[$time]={20,22,24,26,28,30,32,34,36,38};
-
-od(7); // 34
-od(7:); // 34,36,38
-od(:7); // 20,22,24,26,28,30,32,34
-od(::4); // 20,28,36
-od(1:6:2) // 22,26,30
-od(:) // 20,22,24,26,28,30,32,34,36,38
-</pre></div>
-
-<p>A more complex three dimensional example:
-</p><div class="example">
-<pre class="verbatim">($lat.size=2,$lon.size=4)
-th[$time,$lat,$lon]=
- {1, 2, 3, 4, 5, 6, 7, 8,
- 9,10,11,12,13,14,15,16,
- 17,18,19,20,21,22,23,24,
- -99,-99,-99,-99,-99,-99,-99,-99,
- 33,34,35,36,37,38,39,40,
- 41,42,43,44,45,46,47,48,
- 49,50,51,52,53,54,55,56,
- -99,58,59,60,61,62,63,64,
- 65,66,67,68,69,70,71,72,
- -99,74,75,76,77,78,79,-99 };
-
-th(1,1,3); // 16
-th(2,0,:); // 17, 18, 19, 20
-th(:,1,3); // 8, 16, 24, -99, 40, 48, 56, 64, 72, -99
-th(::5,:,0:3:2); // 1, 3, 5, 7, 41, 43, 45, 47
-</pre></div>
-
-<p>If hyperslab arguments collapse to a single value (a cross-section has
-been specified), then that dimension is removed from the returned
-variable.
-If all the values collapse then a scalar variable is returned.
-So, for example, the following is valid:
-</p><div class="example">
-<pre class="example">th_nw=th(0,:,:)+th(9,:,:);
-// th_nw has dimensions $lon,$lat
-// NB: the time dimension has become degenerate
-</pre></div>
-
-<p>The following is invalid:
-</p><div class="example">
-<pre class="example">th_nw=th(0,:,0:1)+th(9,:,0:1);
-</pre></div>
-<p>because the <code>$lon</code> dimension now only has two elements.
-The above can be calculated by using a LHS cast with
-<code>$lon_nw</code> as replacement dim for <code>$lon</code>:
-</p><div class="example">
-<pre class="example">defdim("lon_nw",2);
-th_nw[$lat,$lon_nw]=th(0,:,0:1) +th(9,:,0:1);
-</pre></div>
-
-<p><strong>Hyperslabs on the Left Hand Side of an assign<br></strong>
-When hyperslabing on the LHS, the expression on the RHS must
-evaluate to a scalar or a variable/attribute with the same number of
-elements as the LHS hyperslab.
-Set all elements of the last record to zero:
-</p><div class="example">
-<pre class="example">th(9,:,:)=0.0;
-</pre></div>
-<p>Set first element of each lon element to 1.0:
-</p><div class="example">
-<pre class="example">th(:,:,0)=1.0;
-</pre></div>
-<p>One may hyperslab on both sides of an assign.
-For example, this sets the last record to the first record:
-</p><div class="example">
-<pre class="example">th(9,:,:)=th(0,:,:);
-</pre></div>
-<p>Say <var>th0</var> represents pressure at height=0 and
-<var>th1</var> represents pressure at height=1.
-Then it is possible to insert these hyperslabs into the records
-</p><div class="example">
-<pre class="example">prs[$time,$height,$lat,$lon]=0.0;
-prs(:,0,:,:)=th0;
-prs(:,1,:,:)=th1
-</pre></div>
-
-<p><strong>Reverse method</strong><br>
-<a name="index-reverse_0028_0029"></a>
-Use the <code>reverse()</code> method to reverse a dimension’s elements in a
-variable with at least one dimension.
-This is equivalent to a negative stride, e.g.,
-</p><div class="example">
-<pre class="verbatim">th_rv=th(1 ,:,:).reverse($lon); // {12,11,10,9 }, {16,15,14,13}
-od_rv=od.reverse($time); // {38,36,34,32,30,28,26,24,22,20}
-</pre></div>
-
-<p><strong>Permute method</strong>p<br>
-<a name="index-permute_0028_0029"></a>
-Use the <code>permute()</code> method to swap the dimensions of a variable.
-The number and names of dimension arguments must match the dimensions in
-the variable.
-If the first dimension in the variable is of record type then this must
-remain the first dimension.
-If you want to change the record dimension then consider using
-<code>ncpdq</code>.
-</p>
-<p>Consider the variable:
-</p><div class="example">
-<pre class="example">float three_dmn_var(lat,lev,lon);
-three_dmn_var_prm=three_dmn_var.permute($lon,$lat,$lev);
-// The permuted values are
-three_dmn_var_prm=
- 0,4,8,
- 12,16,20,
- 1,5,9,
- 13,17,21,
- 2,6,10,
- 14,18,22,
- 3,7,11,
- 15,19,23;
-</pre></div>
-
-<a name="ncap_att"></a> <!-- http://nco.sf.net/nco.html#ncap_att --><hr>
-<a name="Attributes"></a>
-<div class="header">
-<p>
-Next: <a href="#Number-literals" accesskey="n" rel="next">Number literals</a>, Previous: <a href="#Arrays-and-hyperslabs" accesskey="p" rel="prev">Arrays and hyperslabs</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Attributes-1"></a>
-<h4 class="subsection">4.1.6 Attributes</h4>
-<a name="index-attributesncap2"></a>
-<p>Attributes are referred to by <em>var_nm at att_nm</em> <br>
-All the following are valid statements:
-</p><div class="example">
-<pre class="verbatim">global at text="Test Attributes"; /* Assign a global variable attribute */
-a1[$time]=time*20;
-a1 at long_name="Kelvin";
-a1 at min=a1.min();
-a1 at max=a1.max();
-a1 at min++;
---a1 at max; q
-a1(0)=a1 at min;
-a1($time.size-1)=a1 at max;
-</pre></div>
-
-<p>A <em>value list</em> can be used on the RHS of an assign...
-<a name="index-value-list"></a>
-</p><div class="example">
-<pre class="verbatim">a1 at trip1={1,2,3} ;
-a1 at triplet={a1 at min,(a1 at min+a1@max)/2,a1 at max};
-</pre></div>
-<p>The netCDF specification allows all attribute types to have a size
-greater than one.
-The maximum is defined by <code>NC_MAX_ATTRS</code>.
-The following is an <code>ncdump</code> of the metadata for variable <var>a1</var>
-</p><div class="example">
-<pre class="example">double a1(time) ;
- a1:long_name = "Kelvin" ;
- a1:max = 199. ;
- a1:min = 21. ;
- a1:trip1 = 1, 2, 3 ;
- a1:triplet = 21., 110., 199. ;
-</pre></div>
-
-<p>The <code>size()</code> method can be used with attributes.
-For example, to save an attribute text string in a variable,
-</p><div class="example">
-<pre class="verbatim">defdim("sng_len", a1 at long_name.size());
-sng_arr[$sng_len]=a1 at long_name; // sng_arr now contains "Kelvin"
-</pre></div>
-<p>Attributes defined in a script are stored in memory and are written to Output after script completion.
-To stop the attribute being written use the ram_delete() method or use a bogus variable name.
-</p>
-<p><strong>Attribute Propagation and Inheritance</strong>
-<a name="index-attribute-propagation"></a>
-<a name="index-attribute-inheritance"></a>
-</p><ul>
-<li> Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS.
- </li><li> Attribute Inheritance: The LHS variable “inherits” attributes from an Input variable with the same name
- </li><li> It is possible to have a regular assign statement for which both propagation and inheritance occur.
-</li></ul>
-
-<div class="example">
-<pre class="example">// prs_mdp inherits attributes from P0:
-prs_mdp[time,lat,lon,lev]=P0*hyam+hybm*PS;
-// th_min inherits attributes from three_dmn_var_dbl:
-th_min=1.0 + 2*three_dmn_var_dbl.min($time);
-</pre></div>
-
-<p>If the attribute name contains non-regular characters use ID quoting. See see <a href="#ID-Quoting">ID Quoting</a>
-</p><div class="example">
-<pre class="verbatim">'b..m1 at c--lost'=23;
-</pre></div>
-
-<a name="ncap_num"></a> <!-- http://nco.sf.net/nco.html#ncap_num --><hr>
-<a name="Number-literals"></a>
-<div class="header">
-<p>
-Next: <a href="#if-statement" accesskey="n" rel="next">if statement</a>, Previous: <a href="#Attributes" accesskey="p" rel="prev">Attributes</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Number-literals-1"></a>
-<h4 class="subsection">4.1.7 Number literals</h4>
-<a name="index-number-literals-ncap2"></a>
-<p>The table below lists the postfix character(s) to add to a number
-literal for type cohesion.
-To use the new netCDF4 types <acronym>NCO</acronym> must be compiled/linked to
-the netCDF4 library and the output file must be <acronym>HDF5</acronym>.
-</p>
-<div class="example">
-<pre class="verbatim">n1[$time]=1UL; // n1 will now by type @code{NC_UINT}
-n2[$lon]=4b; // n2 will be of type @code{NC_BYTE}
-n3[$lat]=5ull; // n3 will be of type @code{NC_UINT64}
-n3 at a1=6.0d; // attribute will be type @code{NC_DOUBLE}
-n3 at a2=-666L; // attribute will be type @code{NC_INT}
-</pre></div>
-
-<p>A floating point number without a postfix will default to
-<code>NC_DOUBLE</code>.
-An integer without a postfix will default to type <code>NC_INT</code>.
-There is no postfix for characters, use a quoted string instead.
-</p><div class="example">
-<pre class="verbatim">n4[$rlev]=0.1 // n4 will be of type @code{NC_DOUBLE}
-n5[$lon_grd]=2.0 // n5 will be of type @code{NC_DOUBLE}
-n6[$gds_crd]=2e3; // n6 will be of type @code{NC_DOUBLE}
-n7[$gds_crd]=2e3f; // n7 will be of type @code{NC_FLOAT}
-n6 at a1=41; // attribute will be type @code{NC_INT}
-n6 at a2=-21; // attribute will be type @code{NC_INT}
-n6 at units="kelvin" // attribute will be type @code{NC_CHAR}
-</pre></div>
-
-<dl compact="compact">
-<dt><strong>netCDF3/4 Types</strong></dt>
-<dt>b|B</dt>
-<dd><p><code>NC_BYTE</code>, a signed 1-byte integer
-</p></dd>
-<dt>none</dt>
-<dd><p><code>NC_CHAR</code>, an ISO/ASCII character
-</p></dd>
-<dt>s|S</dt>
-<dd><p><code>NC_SHORT</code>, a signed 2-byte integer
-</p></dd>
-<dt>l|L</dt>
-<dd><p><code>NC_INT</code>, a signed 4-byte integer
-</p></dd>
-<dt>f|F</dt>
-<dd><p><code>NC_FLOAT</code>, a single-precision (4-byte) floating point number
-</p></dd>
-<dt>d|D</dt>
-<dd><p><code>NC_DOUBLE</code>, a double-precision (8-byte) floating point number
-</p></dd>
-<dt><strong>netCDF4 Types</strong></dt>
-<dt>ub|UB</dt>
-<dd><p><code>NC_UBYTE</code>, an unsigned 1-byte integer
-</p></dd>
-<dt>us|US</dt>
-<dd><p><code>NC_USHORT</code>, an unsigned 2-byte integer
-</p></dd>
-<dt>u|U|ul|UL</dt>
-<dd><p><code>NC_UINT</code>, an unsigned 4-byte integer
-</p></dd>
-<dt>ll|LL</dt>
-<dd><p><code>NC_INT64</code>, a signed 8-byte integer
-</p></dd>
-<dt>ull|ULL</dt>
-<dd><p><code>NC_UINT64</code>, an unsigned 8-byte integer
-</p></dd>
-</dl>
-
-<a name="ncap_if"></a> <!-- http://nco.sf.net/nco.html#ncap_if --><hr>
-<a name="if-statement"></a>
-<div class="header">
-<p>
-Next: <a href="#print-statement" accesskey="n" rel="next">print statement</a>, Previous: <a href="#Number-literals" accesskey="p" rel="prev">Number literals</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="if-statement-1"></a>
-<h4 class="subsection">4.1.8 if statement</h4>
-<a name="index-if_0028_0029"></a>
-<p>The syntax of the if statement is similar to its C counterpart.
-The <em>Conditional Operator (ternary operator)</em> has also been
-implemented.
-</p><div class="example">
-<pre class="verbatim">if(exp1)
- stmt1;
-else if(exp2)
- stmt2;
-else
- stmt3;
-
-# Can use code blocks as well:
-if(exp1){
- stmt1;
- stmt1a;
- stmt1b;
-}else if(exp2)
- stmt2;
-else{
- stmt3;
- stmt3a;
- stmt3b;
-}
-</pre></div>
-
-<p>For a variable or attribute expression to be logically true
-all its non-missing value elements must be logically true, i.e.,
-non-zero.
-The expression can be of any type.
-Unlike C<!-- /@w --> there is no short-circuiting of an expression with the
-OR (<code>||</code>) and AND (<code>&&</code>) operators.
-The whole expression is evaluated regardless if one of the AND/OR
-operands are True/False.
-</p><div class="example">
-<pre class="verbatim"># Simple example
-if(time>0)
- print("All values of time are greater than zero\n");
-else if( time<0)
- print("All values of time are less than zero\n");
-else {
- time_max=time.max();
- time_min=time.min();
- print("min value of time=");print(time_min,"%f");
- print("max value of time=");print(time_max,"%f");
-}
-
-# Example from ddra.nco
-if(fl_typ==fl_typ_gcm){
- var_nbr_apx=32;
- lmn_nbr=1.0*var_nbr_apx*varsz_gcm_4D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_gcm_4D; // Block size
- lmn_nbr_wgt=dmnsz_gcm_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
-}else if(fl_typ==fl_typ_stl){
- var_nbr_apx=8;
- lmn_nbr=1.0*var_nbr_apx*varsz_stl_2D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_stl_2D; // Block size
- lmn_nbr_wgt=dmnsz_stl_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
-} // !fl_typ
-</pre></div>
-
-<p><strong>Conditional Operator <br></strong>
-</p><div class="example">
-<pre class="example">// netCDF4 needed for this example
-th_nw=(three_dmn_var_sht >= 0 ? three_dmn_var_sht.uint() : \
- three_dmn_var_sht.int());
-</pre></div>
-
-<a name="ncap_prn"></a> <!-- http://nco.sf.net/nco.html#ncap_prn --><hr>
-<a name="print-statement"></a>
-<div class="header">
-<p>
-Next: <a href="#Missing-values-ncap2" accesskey="n" rel="next">Missing values ncap2</a>, Previous: <a href="#if-statement" accesskey="p" rel="prev">if statement</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="print-statement-1"></a>
-<h4 class="subsection">4.1.9 print statement</h4>
-<a name="index-print_0028_0029-ncap2"></a>
-<div class="example">
-<pre class="example">print(variable_name/attribute name/string, format string);
-</pre></div>
-
-<p>The print function takes a variable name or attribute name or
-a quoted string and prints the contents in a in a similar fashion to
-<code>ncks -H</code>.
-There is also an optional C-language style format string argument.
-Currently the print function cannot print <acronym>RAM</acronym> variables or expressions
-such as <code>'print(var_msk*3+4)'</code>.
-To print an expression, first evaluate it as a non-<acronym>RAM</acronym> variable (so it
-will be saved and can be printed), and then print the variable.
-</p>
-<p>examples
-</p><div class="example">
-<pre class="verbatim">print(lon);
-lon[0]=0
-lon[1]=90
-lon[2]=180
-lon[3]=270
-
-print(lon_2D_rrg,"%3.2f,");
-0.00,0.00,180.00,0.00,180.00,0.00,180.00,0.00,
-
-print(mss_val_fst at _FillValue);
-mss_val_fst at _FillValue, size = 1 NC_FLOAT, value = -999
-
-print("This function \t is monotonic\n");
-This function is monotonic
-</pre></div>
-
-<a name="ncap_miss"></a> <!-- http://nco.sf.net/nco.html#ncap_miss --><hr>
-<a name="Missing-values-ncap2"></a>
-<div class="header">
-<p>
-Next: <a href="#Methods-and-functions" accesskey="n" rel="next">Methods and functions</a>, Previous: <a href="#print-statement" accesskey="p" rel="prev">print statement</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Missing-values-ncap2-1"></a>
-<h4 class="subsection">4.1.10 Missing values ncap2</h4>
-<a name="index-missing-values-ncap2"></a>
-<p>Missing values operate slightly differently in <code>ncap2</code>
-Consider the expression where op is any of the following operators (excluding ’=’)
-</p><div class="example">
-<pre class="example">Arithmetic operators ( * / % + - ^ )
-Binary Operators ( >, >= <, <= ==, !=,==,||,&&, >>,<< )
-Assign Operators ( +=,-=,/=, *= )
-
-var1 'op' var2
-</pre></div>
-
-<p>If var1 has a missing value then this is the value used in the
-operation, otherwise the missing value for var2 is used.
-If during the element-by-element operation an element from either
-operand is equal to the missing value then the missing value is carried
-through.
-In this way missing values ’percolate’ or propagate through an
-expression.<br>
-Missing values associated with Output variables are stored in memory and
-are written to disk after the script finishes.
-During script execution its possible (and legal) for the missing value
-of a variable to take on several different values.
-</p><div class="example">
-<pre class="example"># Consider the variable:
-int rec_var_int_mss_val_int(time); =-999,2,3,4,5,6,7,8,-999,-999;
-rec_var_int_mss_val_int:_FillValue = -999;
-
-n2=rec_var_int_mss_val_int + rec_var_int_mss_val_int.reverse($time);
-
-n2=-999,-999,11,11,11,11,11,11,999,-999;
-</pre></div>
-
-<a name="set_miss"></a> <!-- http://nco.sf.net/nco.html#set_miss -->
-<a name="get_miss"></a> <!-- http://nco.sf.net/nco.html#get_miss -->
-<a name="change_miss"></a> <!-- http://nco.sf.net/nco.html#change_miss -->
-<a name="number_miss"></a> <!-- http://nco.sf.net/nco.html#number_miss --><p>The following methods manipulate missing value information associated
-with a variable.
-They only work on variables in Output.
-</p><dl compact="compact">
-<dt><code>set_miss(expr)</code></dt>
-<dd><a name="index-set_005fmiss_0028_0029"></a>
-<p>The numeric argument <var>expr</var> becomes the new missing value,
- overwriting the old missing value, if any.
- The argument given is converted if necessary to the variable type.
- NB: This only changes the missing value attribute.
- Missing values in the original variable remain unchanged, and thus
- are no long considered missing values.
- They are “orphaned”.
- Thus <code>set_miss()</code> is normally used only when creating new
- variables.
- The intrinsic function <code>change_miss()</code> (see below) is typically
- used to edit values of existing variables.
-</p></dd>
-<dt><code>change_miss(expr)</code></dt>
-<dd><a name="index-change_005fmiss_0028_0029"></a>
-<p>Sets or changes (any pre-existing) missing value attribute and missing
- data values to <var>expr</var>.
- NB: This is an expensive function since all values must be examined.
- Use this function when changing missing values for pre-existing
- variables.
-</p></dd>
-<dt><code>get_miss()</code></dt>
-<dd><a name="index-get_005fmiss_0028_0029"></a>
-<p>Returns the missing value of a variable.
- If the variable exists in Input and Output then the missing value of
- the variable in Output is returned.
- If the variable has no missing value then an error is returned.
-</p></dd>
-<dt><code>delete_miss()</code></dt>
-<dd><a name="index-delete_005fmiss_0028_0029"></a>
-<p>Delete the missing value associated with a variable.
-</p></dd>
-<dt><code>number_miss()</code></dt>
-<dd><a name="index-number_005fmiss_0028_0029"></a>
-<p>Count the number of missing values a variable contains.
-</p></dd>
-</dl>
-
-<div class="example">
-<pre class="verbatim">th=three_dmn_var_dbl;
-th.change_miss(-1e10d);
-/* Set values less than 0 or greater than 50 to missing value */
-where(th < 0.0 || th > 50.0) th=th.get_miss();
-
-# Another example:
-new[$time,$lat,$lon]=1.0;
-new.set_miss(-997.0);
-
-// Extract only elements divisible by 3
-where (three_dmn_var_dbl%3 == 0)
- new=three_dmn_var_dbl;
-elsewhere
- new=new.get_miss();
-
-// Print missing value and variable summary
-mss_val_nbr=three_dmn_var_dbl.number_miss();
-print(three_dmn_var_dbl at _FillValue);
-print("Number of missing values in three_dmn_var_dbl: ");
-print(mss_val_nbr,"%d");
-print(three_dmn_var_dbl);
-</pre></div>
-
-<a name="ncap_mtd"></a> <!-- http://nco.sf.net/nco.html#ncap_mtd --><hr>
-<a name="Methods-and-functions"></a>
-<div class="header">
-<p>
-Next: <a href="#RAM-variables" accesskey="n" rel="next">RAM variables</a>, Previous: <a href="#Missing-values-ncap2" accesskey="p" rel="prev">Missing values ncap2</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Methods-and-functions-1"></a>
-<h4 class="subsection">4.1.11 Methods and functions</h4>
-
-<p>The convention within this document is that methods can be used as
-functions.
-However, functions are not and cannot be used as methods.
-Methods can be daisy-chained d and their syntax is cleaner than functions.
-Method names are reserved words and CANNOT be used as variable names.
-The command <code>ncap2 -f</code> shows the complete list of methods available
-on your build.
-</p><div class="example">
-<pre class="example">n2=sin(theta)
-n2=theta.sin()
-n2=sin(theta)^2 + cos(theta)^2
-n2=theta.sin().pow(2) + theta.cos()^2
-</pre></div>
-
-<p>This statement chains together methods to convert three_dmn_var_sht to
-type double, average it, then convert this back to type short:
-</p><div class="example">
-<pre class="example">three_avg=three_dmn_var_sht.double().avg().short();
-</pre></div>
-
-<br>
-<p><strong>Aggregate Methods <br></strong>
-These methods mirror the averaging types available in <code>ncwa</code>. The arguments to the methods are the dimensions to average over. Specifying no dimensions is equivalent to specifying all dimensions i.e., averaging over all dimensions. A masking variable and a weighting variable can be manually created and applied as needed.
-</p>
-<dl compact="compact">
-<dt><code>avg()</code></dt>
-<dd><a name="index-avg_0028_0029"></a>
-<p>Mean value
-</p></dd>
-<dt><code>sqravg()</code></dt>
-<dd><a name="index-sqravg_0028_0029"></a>
-<p>Square of the mean
-</p></dd>
-<dt><code>avgsqr()</code></dt>
-<dd><p>Mean of sum of squares
-</p></dd>
-<dt><code>max()</code></dt>
-<dd><a name="index-max_0028_0029"></a>
-<p>Maximum value
-</p></dd>
-<dt><code>min()</code></dt>
-<dd><a name="index-min_0028_0029"></a>
-<p>Minimum value
-</p></dd>
-<dt><code>mabs()</code></dt>
-<dd><a name="index-mabs_0028_0029"></a>
-<p>Maximum absolute value
-</p></dd>
-<dt><code>mebs()</code></dt>
-<dd><a name="index-mebs_0028_0029"></a>
-<p>Mean absolute value
-</p></dd>
-<dt><code>mibs()</code></dt>
-<dd><a name="index-mibs_0028_0029"></a>
-<p>Minimum absolute value
-</p></dd>
-<dt><code>rms()</code></dt>
-<dd><p>Root-mean-square (normalize by <var>N</var>)
-</p></dd>
-<dt><code>rmssdn()</code></dt>
-<dd><a name="index-rmssdn_0028_0029"></a>
-<p>Root-mean square (normalize by <var>N-1</var>)
-</p></dd>
-<dt><code>ttl() or total()</code></dt>
-<dd><a name="index-ttl_0028_0029"></a>
-<p>Sum of values
-</p></dd>
-</dl>
-
-<div class="example">
-<pre class="example">// Average a variable over time
-four_time_avg=four_dmn_rec_var($time);
-</pre></div>
-
-<br>
-<p><strong> Packing Methods <br> </strong>
-For more information see see <a href="#Packed-data">Packed data</a> and see <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a><br>
-</p><dl compact="compact">
-<dt><code>pack() & pack_short()</code></dt>
-<dd><a name="index-pack_0028_0029"></a>
-<p>The default packing algorithm is applied and variable is packed to <code>NC_SHORT</code>
-</p></dd>
-<dt><code>pack_byte()</code></dt>
-<dd><a name="index-pack_005fbyte_0028_0029"></a>
-<p>Variable is packed to <code>NC_BYTE</code>
-</p></dd>
-<dt><code>pack_short()</code></dt>
-<dd><a name="index-pack_005fshort_0028_0029"></a>
-<p>Variable is packed to <code>NC_SHORT</code>
-</p></dd>
-<dt><code>pack_int()</code></dt>
-<dd><a name="index-pack_005fint_0028_0029"></a>
-<p>Variable is packed to <code>NC_INT</code>
-</p></dd>
-<dt><code>unpack()</code></dt>
-<dd><a name="index-unpack_0028_0029"></a>
-<p>The standard unpacking algorithm is applied.
-</p></dd>
-</dl>
-
-<p><strong>Basic Methods <br></strong>
-These methods work with variables and attributes. They have no arguments
-</p>
-<dl compact="compact">
-<dt><code>size()</code></dt>
-<dd><a name="index-size_0028_0029"></a>
-<p>Total number of elements
-</p></dd>
-<dt><code>ndims()</code></dt>
-<dd><a name="index-ndims_0028_0029"></a>
-<p>Number of dimensions in variable
-</p></dd>
-<dt><code>type()</code></dt>
-<dd><a name="index-type_0028_0029"></a>
-<p>Returns the netcdf type (see previous section)
-</p></dd>
-</dl>
-
-<br>
-<p><strong>Utility Methods <br></strong>
-These functions are used to manipulate missing values and <acronym>RAM</acronym> variables.
-see <a href="#Missing-values-ncap2">Missing values ncap2</a>
-</p>
-<dl compact="compact">
-<dt><code>set_miss(expr)</code></dt>
-<dd><p>Takes one argument the missing value. Sets or overwrites the existing missing value. The argument given is converted if necessary to the variable type
-</p></dd>
-<dt><code>change_miss(expr)</code></dt>
-<dd><p>Changes the missing value elements of the variable to the new missing value (n.b. an expensive function).
-</p></dd>
-<dt><code>get_miss()</code></dt>
-<dd><p>Returns the missing value of a variable in Input or Output
-</p></dd>
-<dt><code>delete_miss()</code></dt>
-<dd><p>Deletes the missing value associated with a variable.
-</p></dd>
-<dt><code>ram_write()</code></dt>
-<dd><p>Writes a <acronym>RAM</acronym> variable to disk i.e., converts it to a regular disk type variable
-</p></dd>
-<dt><code>ram_delete()</code></dt>
-<dd><p>Deletes a <acronym>RAM</acronym> variable or an attribute
-</p></dd>
-</dl>
-
-<br>
-<p><strong>PDQ Methods <br></strong>
-See see <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a>
-</p><dl compact="compact">
-<dt><code>reverse(dim args)</code></dt>
-<dd><p>Reverses the dimension ordering of elements in a variable.
-</p></dd>
-<dt><code>permute(dim args)</code></dt>
-<dd><p>Re-shapes variables by re-ordering the dimensions. All the dims of the variable must be specified in the arguments. A limitation of this permute (unlike ncpdq) is that the record dimension cannot be re-assigned.
-</p></dd>
-</dl>
-<p>// Swap dimensions about and reorder along lon
-</p><div class="example">
-<pre class="example">lat_2D_rrg_new=lat_2D_rrg.permute($lon,$lat).reverse($lon);
-lat_2D_rrg_new=0,90,-30,30,-30,30,-90,0
-</pre></div>
-
-<br>
-<p><strong>Type Conversion Methods <br></strong>
-These methods allow <code>ncap2</code> to convert variables and attributes to the different netcdf types. For more details on automatic and manual type conversion see (see <a href="#Type-Conversion">Type Conversion</a>). You may only use the new netCDF4 types if you have compiled/links <acronym>NCO</acronym> with the netCDF4 library and the Output file is HDF5.
-</p>
-<dl compact="compact">
-<dt><code><strong>netCDF3/4 Types</strong></code></dt>
-<dt><code>byte()</code></dt>
-<dd><a name="index-byte_0028_0029"></a>
-<p>convert to <code>NC_BYTE</code>, a signed 1-byte integer
-</p></dd>
-<dt><code>char()</code></dt>
-<dd><a name="index-char_0028_0029"></a>
-<p>convert to <code>NC_CHAR</code>, an ISO/ASCII character
-</p></dd>
-<dt><code>short()</code></dt>
-<dd><a name="index-sshort_0028_0029"></a>
-<p>convert to <code>NC_SHORT</code>, a signed 2-byte integer
-</p></dd>
-<dt><code>int()</code></dt>
-<dd><a name="index-int_0028_0029"></a>
-<p>convert to <code>NC_INT</code>, a signed 4-byte integer
-</p></dd>
-<dt><code>float()</code></dt>
-<dd><a name="index-float_0028_0029"></a>
-<p>convert to <code>NC_FLOAT</code>, a single-precision (4-byte) floating point number
-</p></dd>
-<dt><code>double()</code></dt>
-<dd><a name="index-double_0028_0029"></a>
-<p>convert to <code>NC_DOUBLE</code>, a double-precision (8-byte) floating point number
-</p></dd>
-<dt><code><strong>netCDF4 Types</strong></code></dt>
-<dt><code>ubyte()</code></dt>
-<dd><a name="index-ubyte_0028_0029"></a>
-<p>convert to <code>NC_UBYTE</code>, an unsigned 1-byte integer
-</p></dd>
-<dt><code>ushort()</code></dt>
-<dd><a name="index-ushort_0028_0029"></a>
-<p>convert to <code>NC_USHORT</code>, an unsigned 2-byte integer
-</p></dd>
-<dt><code>uint()</code></dt>
-<dd><a name="index-uint_0028_0029"></a>
-<p>convert to <code>NC_UINT</code>, an unsigned 4-byte integer
-</p></dd>
-<dt><code>int64()</code></dt>
-<dd><a name="index-int64_0028_0029"></a>
-<p>convert to <code>NC_INT64</code>, a signed 8-byte integer
-</p></dd>
-<dt><code>uint64()</code></dt>
-<dd><a name="index-unit64_0028_0029"></a>
-<p>convert to <code>NC_UINT64</code>, an unsigned 8-byte integer
-</p></dd>
-</dl>
-
-<p><strong>Intrinsic Mathematical Methods <br></strong>
-The list of mathematical methods is system dependant.
-For the full list see <a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a>
-</p>
-<p>All the mathematical methods take a single argument except <code>atan2()</code>
-and <code>pow()</code> which take two.
-If the operand type is less than <em>float</em> then the result will be of
-type <em>float</em>.
-Arguments of type <em>double</em> yield results of type <em>double</em>.
-Like the other methods, you are free to use the mathematical methods as functions.
-</p>
-<div class="example">
-<pre class="example">n1=pow(2,3.0f) // n1 type float
-n2=atan2(2,3.0) // n2 type double
-n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n3 type double
-</pre></div>
-
-<a name="ncap_ram"></a> <!-- http://nco.sf.net/nco.html#ncap_ram --><a name="index-RAM-variables-1"></a>
-<hr>
-<a name="RAM-variables"></a>
-<div class="header">
-<p>
-Next: <a href="#Where-statement" accesskey="n" rel="next">Where statement</a>, Previous: <a href="#Methods-and-functions" accesskey="p" rel="prev">Methods and functions</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="RAM-variables-1"></a>
-<h4 class="subsection">4.1.12 <acronym>RAM</acronym> variables</h4>
-<p>Unlike regular variables, <acronym>RAM</acronym> variables are never written to disk.
-Hence using <acronym>RAM</acronym> variables in place of regular variables (especially
-within loops) significantly increases execution speed.
-Variables that are frequently accessed within <code>for</code> or <code>where</code>
-clauses provide the greatest opportunities for optimization.
-To declare and define a <acronym>RAM</acronym> variable simply prefix the variable name
-with an asterisk (<code>*</code>) when the variable is declared/initialized.
-To delete a <acronym>RAM</acronym> variables (and recover their memory) use the
-<code>ram_delete()</code> method.
-To write a <acronym>RAM</acronym> variable to disk (like a regular variable) use
-<code>ram_write()</code>.
-<a name="index-ram_005fwrite_0028_0029"></a>
-<a name="index-ram_005fdelete_0028_0029"></a>
-</p><div class="example">
-<pre class="example">*temp[$time,$lat,$lon]=10.0; // Cast
-*temp_avg=temp.avg($time); // Regular assign
-temp.ram_delete(); // Delete RAM variable
-temp_avg.ram_write(); // Write Variable to output
-
-// Create and increment a RAM variable from "one" in Input
-*one++;
-// Create RAM variables from the variables three and four in Input.
-// Multiply three by 10 and add it to four.
-*four+=*three*=10; // three=30, four=34
-</pre></div>
-
-<a name="where"></a> <!-- http://nco.sf.net/nco.html#where -->
-<a name="ncap_whr"></a> <!-- http://nco.sf.net/nco.html#ncap_whr -->
-<a name="ncap_where"></a> <!-- http://nco.sf.net/nco.html#ncap_where --><hr>
-<a name="Where-statement"></a>
-<div class="header">
-<p>
-Next: <a href="#Loops" accesskey="n" rel="next">Loops</a>, Previous: <a href="#RAM-variables" accesskey="p" rel="prev">RAM variables</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Where-statement-1"></a>
-<h4 class="subsection">4.1.13 Where statement</h4>
-<a name="index-where_0028_0029"></a>
-<p>A <code>where()</code> combines the definition and application of a mask all in one go and can lead to succinct code.
-The full syntax of a <code>where()</code> statement is as follows:
-</p>
-<div class="example">
-<pre class="verbatim">// Single assign (the 'elsewhere' block is optional)
-where(mask)
- var1=expr1;
-elsewhere
- var1=expr2;
-
-// Multiple assigns
-where(mask){
- var1=expr1;
- var2=expr2;
- ...
-}elsewhere{
- var1=expr3
- var2=expr4
- var3=expr5;
- ...
-}
-</pre></div>
-
-<ul>
-<li> The only expression allowed in the predicate of a where is assign,
-i.e., ’var=expr’.
-This assign differs from a regular <code>ncap2</code> assign.
-The LHS var must already exist in Input or Output.
-The RHS expression must evaluate to a scalar or a variable/attribute of
-the same size as the LHS variable.
-</li><li> Consider when both the LHS and RHS are variables:
-For every element where mask condition is True, the corresponding LHS
-variable element is re-assigned to its partner element on the RHS.
-In the elsewhere part the mask is logically inverted and the assign
-process proceeds as before.
-</li><li> If the mask dimensions are a subset of the LHS variable’s
-dimensions, then it is made to conform; if it cannot be made to conform
-then script execution halts.
-</li><li> Missing values in the mask evaluate to False in the where
-code/block statement and to True in the elsewhere block/statement.
-LHS variable elements set to missing value are not re-assigned.
-For these reasons, do not explicitly reference missing values in the
-masking condition, e.g., <code>where(foo=foo.get_missing()) foo=1;</code>
-will not work as expected.
-</li></ul>
-
-<p>Example:
-Consider the variables <code>float lon_2D_rct(lat,lon);</code> and
-<code>float var_msk(lat,lon);</code>.
-Suppose we wish to multiply by two the elements for which <code>var_msk</code>
-equals 1<!-- /@w -->:
-</p><div class="example">
-<pre class="example">where(var_msk==1) lon_2D_rct=2*lon_2D_rct;
-</pre></div>
-<p>Suppose that we have the variable <code>int RDM(time)</code> and that we want
-to set its values less than 8 or greater than 80 to 0<!-- /@w -->:
-</p><div class="example">
-<pre class="example">where(RDM < 8 || RDM > 80) RDM=0;
-</pre></div>
-
-<a name="WRF"></a> <!-- http://nco.sf.net/nco.html#WRF -->
-<a name="SLD"></a> <!-- http://nco.sf.net/nco.html#SLD -->
-<a name="wrf"></a> <!-- http://nco.sf.net/nco.html#wrf -->
-<a name="sld"></a> <!-- http://nco.sf.net/nco.html#sld --><a name="index-Weather-and-Research-Forecast-_0028WRF_0029-Model"></a>
-<a name="index-Swath_002dlike-Data-_0028SLD_0029"></a>
-<a name="index-WRF-_0028Weather-and-Research-Forecast-Model_0029"></a>
-<a name="index-SLD-_0028Swath_002dlike-Data_0029"></a>
-<p>Consider irregularly gridded data, described using rank 2<!-- /@w --> coordinates:
-<code>double lat(south_north,east_west)</code>,
-<code>double lon(south_north,east_west)</code>,
-<code>double temperature(south_north,east_west)</code>.
-This type of structure is often found in regional weather/climate model
-(such as <acronym>WRF</acronym>) output, and in satellite swath data.
-For this reason we call it “Swath-like Data”, or <acronym>SLD</acronym>.
-To find the average temperature in a region bounded by
-[<var>lat_min</var>,<var>lat_max</var>] and [<var>lon_min</var>,<var>lon_max</var>]:
-</p><div class="example">
-<pre class="verbatim">temperature_msk[$south_north,$east_west]=0.0;
-where((lat >= lat_min && lat <= lat_max) && (lon >= lon_min && lon <= lon_max))
- temperature_msk=temperature;
-elsewhere
- temperature_msk=temperature at _FillValue;
-
-temp_avg=temperature_msk.avg();
-temp_max=temperature.max();
-</pre></div>
-
-<a name="NARR"></a> <!-- http://nco.sf.net/nco.html#NARR -->
-<a name="narr"></a> <!-- http://nco.sf.net/nco.html#narr --><a name="index-NARR-_0028North-American-Regional-Reanalysis_0029a"></a>
-<a name="index-North-American-Regional-Reanalysis-_0028NARR_0029"></a>
-<p>For North American Regional Reanalysis (<acronym>NARR</acronym>) data
-(example
-<a href="http://dust.ess.uci.edu/diwg/narr_uwnd.199605.nc">dataset</a>)
-the procedure looks like this
-</p><div class="example">
-<pre class="verbatim">ncap2 -O -v -S ~/narr.nco ${DATA}/hdf/narr_uwnd.199605.nc ~/foo.nc
-</pre></div>
-<p>where <samp>narr.nco</samp> is an <code>ncap2</code> script like this:
-</p><div class="example">
-<pre class="verbatim">/* North American Regional Reanalysis (NARR) Statistics
- NARR stores grids with 2-D latitude and longitude, aka Swath-like Data (SLD)
- Here we work with three variables:
- lat(y,x), lon(y,x), and uwnd(time,level,y,x);
- To study sub-regions of SLD, we use masking techniques:
- 1. Define mask as zero times variable to be masked
- Then mask automatically inherits variable attributes
- And average below will inherit mask attributes
- 2. Optionally, create mask as RAM variable (as below with asterisk *)
- NCO does not write RAM variable to output
- Masks are often unwanted, and can be big, so this speeds execution
- 3. Example could be extended to preserve mean lat and lon of sub-region
- Follow uwnd example to do this: lat_msk=0.0*lat ... lat_avg=lat.avg($y,$x) */
-*uwnd_msk=0.0*uwnd;
-where((lat >= 35.6 && lat <= 37.0) && (lon >= -100.5 && lon <= -99.0))
- uwnd_msk=uwnd;
-elsewhere
- uwnd_msk=uwnd at _FillValue;
-
-// Average only over horizontal dimensions x and y (preserve level and time)
-uwnd_avg=uwnd_msk.avg($y,$x);
-</pre></div>
-<p>Stripped of comments and formatting, this example is a three-statement
-script executed by a one-line command.
-<acronym>NCO</acronym> needs only this meagre input to unpack and copy the input
-data and attributes, compute the statistics, and then define and write
-the output file.
-Unless the comments pointed out that wind variable (<code>uwnd</code>) was
-four-dimensional and the latitude/longitude grid variables were both
-two-dimensional, there would be no way to tell.
-This shows how <acronym>NCO</acronym> hides from the user the complexity of
-analyzing multi-dimensional <acronym>SLD</acronym>.
-We plan to extend such <acronym>SLD</acronym> features to more operators soon.
-</p>
-<a name="ncap_lop"></a> <!-- http://nco.sf.net/nco.html#ncap_lop --><hr>
-<a name="Loops"></a>
-<div class="header">
-<p>
-Next: <a href="#Include-files" accesskey="n" rel="next">Include files</a>, Previous: <a href="#Where-statement" accesskey="p" rel="prev">Where statement</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Loops-1"></a>
-<h4 class="subsection">4.1.14 Loops</h4>
-<a name="index-while_0028_0029"></a>
-<a name="index-for_0028_0029"></a>
-<p><code>ncap2</code> supplies <code>for()</code> loops and <code>while()</code> loops.
-They are completely unoptimized so use them only with <acronym>RAM</acronym>
-variables unless you want thrash your disk to death.
-To break out of a loop use the <code>break</code> command.
-To iterate to the next cycle use the <code>continue</code> command.
-</p>
-<div class="example">
-<pre class="verbatim">// Set elements in variable double temp(time,lat)
-// If element < 0 set to 0, if element > 100 set to 100
-*sz_idx=$time.size;
-*sz_jdx=$lat.size;
-
-for(*idx=0;idx<sz_idx;idx++)
- for(*jdx=0;jdx<sz_jdx;jdx++)
- if(temp(idx,jdx) > 100) temp(idx,jdx)=100.0;
- else if(temp(idx,jdx) < 0) temp(idx,jdx)=0.0;
-
-// Are values of co-ordinate variable double lat(lat) monotonic?
-*sz=$lat.size;
-
-for(*idx=1;idx<sz;idx++)
- if(lat(idx)-lat(idx-1) < 0.0) break;
-
-if(idx == sz) print("lat co-ordinate is monotonic\n");
- else print("lat co-ordinate is NOT monotonic\n");
-
-// Sum odd elements
-*idx=0;
-*sz=$lat_nw.size;
-*sum=0.0;
-
-while(idx<sz){
- if(lat(idx)%2) sum+=lat(idx);
- idx++;
-}
-
-ram_write(sum);
-print("Total of odd elements ");print(sum);print("\n");
-</pre></div>
-
-<a name="ncap_inc"></a> <!-- http://nco.sf.net/nco.html#ncap_inc --><hr>
-<a name="Include-files"></a>
-<div class="header">
-<p>
-Next: <a href="#Sort-methods" accesskey="n" rel="next">Sort methods</a>, Previous: <a href="#Loops" accesskey="p" rel="prev">Loops</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Include-files-1"></a>
-<h4 class="subsection">4.1.15 Include files</h4>
-<a name="index-include"></a>
-<p>The syntax of an <var>include-file</var> is:
-</p><div class="example">
-<pre class="example">#include "script.nco"
-</pre></div>
-<p>The script filename is searched relative to the run directory.
-It is possible to nest include files to an arbitrary depth.
-A handy use of inlcude files is to store often used constants.
-Use <acronym>RAM</acronym> variables if you do not want these constants written to
-<var>output-file</var>.
-</p><div class="example">
-<pre class="example">// script.nco
-// Sample file to #include in ncap2 script
-*pi=3.1415926535; // RAM variable, not written to output
-*h=6.62607095e-34; // RAM variable, not written to output
-e=2.71828; // Regular (disk) variable, written to output
-</pre></div>
-
-<a name="srt"></a> <!-- http://nco.sf.net/nco.html#srt -->
-<a name="sort"></a> <!-- http://nco.sf.net/nco.html#sort -->
-<a name="remap"></a> <!-- http://nco.sf.net/nco.html#remap --><hr>
-<a name="Sort-methods"></a>
-<div class="header">
-<p>
-Next: <a href="#Irregular-grids" accesskey="n" rel="next">Irregular grids</a>, Previous: <a href="#Include-files" accesskey="p" rel="prev">Include files</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="sort-methods"></a>
-<h4 class="subsection">4.1.16 <code>sort</code> methods</h4>
-<a name="index-sort"></a>
-<a name="index-asort"></a>
-<a name="index-dsort"></a>
-<a name="index-remap"></a>
-<a name="index-unmap"></a>
-<a name="index-invert_005fmap"></a>
-<p>In <acronym>ncap2</acronym> there are multiple ways to sort data.
-Beginning with <acronym>NCO</acronym> 4.1.0 (March, 2012), <acronym>ncap2</acronym>
-support six sorting functions:
-</p><div class="example">
-<pre class="example">var_out=sort(var_in,&srt_map); // Ascending sort
-var_out=asort(var_in,&srt_map); // Accending sort
-var_out=dsort(var_in,&srt_map); // Desending sort
-var_out=remap(var_in,srt_map); // Apply srt_map to var_in
-var_out=unmap(var_in,srt_map); // Reverse what srt_map did to var_in
-dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts srt_map
-</pre></div>
-<p>The first two functions, <code>sort()</code> and <code>asort()</code>
-sort, in ascending order, all the elements of <var>var_in</var> (which can be
-a variable or attribute) without regard to any dimensions.
-The third function, <code>dsort()</code> does the same but sorts in
-descending order.
-Remember that ascending and descending sorts are specified by
-<code>asort()</code> and <code>dsort()</code>, respectively.
-</p>
-<p>These three functions are overloaded to take a second, optional argument
-called the sort map <var>srt_map</var>, which should be supplied as a
-call-by-reference variable, i.e., preceded with an ampersand.
-If the sort map does not yet exist, then it will be created and
-returned as an integer type the same shape as the input variable.
-</p>
-<p>The output <var>var_out</var> of each sort function is a sorted version of
-the input, <var>var_in</var>.
-The output <var>var_out</var> of the two mapping functions the result of
-applying (with <code>remap()</code> or un-applying (with <code>unmap()</code>)
-the sort map <var>srt_map</var> to the input <var>var_in</var>.
-To apply the sort map with <code>remap()</code> the size of the variable
-must be exactly divisible by the size of the sort map.
-</p>
-<p>The final function <code>invert_map()</code> returns the so-called
-de-sorting map <var>dsr_map</var> which is inverse map of the input map
-<var>srt_map</var>.
-This gives the user access to both the forward and inverse sorting maps
-which can be useful in special situations.
-</p><div class="example">
-<pre class="verbatim">a1[$time]={10,2,3,4,6,5,7,3,4,1};
-a1_sort=sort(a1);
-print(a1_sort);
-// 1, 2, 3, 3, 4, 4, 5, 6, 7, 10;
-
-a2[$lon]={2,1,4,3};
-a2_sort=sort(a2,&a2_map);
-print(a2);
-// 1, 2, 3, 4
-print(a2_map);
-// 1, 0, 3, 2;
-</pre></div>
-
-<p>If the map variable does not exist prior to the <code>sort()</code> call,
-then it will be created with the same shape as the input variable and be
-of type <code>NC_INT</code>.
-If the map variable already exists, then the only restriction is that it
-be of at least the same size as the input variable.
-To apply a map use <code>remap(var_in,srt_map)</code>.
-</p><div class="example">
-<pre class="verbatim">defdim("nlat",5);
-
-a3[$lon]={2,5,3,7};
-a4[$nlat,$lon]={
- 1, 2, 3, 4,
- 5, 6, 7, 8,
- 9,10,11,12,
- 13,14,15,16,
- 17,18,19,20};
-
-a3_sort=sort(a3,&a3_map);
-print(a3_map);
-// 0, 2, 1, 3;
-
-a4_sort=remap(a4,a3_map);
-print(a4_sort);
-// 1, 3, 2, 4,
-// 5, 7, 6, 8,
-// 9,11,10,12,
-// 13,15,14,16,
-// 17,19,18,20;
-
-a3_map2[$nlat]={4,3,0,2,1};
-
-a4_sort2=remap(a4,a3_map2);
-print(a4_sort2);
-// 3, 5, 4, 2, 1
-// 8, 10, 9,7, 6,
-// 13,15,14,12,11,
-// 18,20,19,17,16
-</pre></div>
-<p>As in the above example you may create your own sort map.
-To sort in descending order, apply the <code>reverse()</code> method after the
-<code>sort()</code>.
-</p>
-<p>Here is an extended example of how to use <code>ncap2</code> features to
-hyperslab an irregular region based on the values of a variable not a
-coordinate.
-The distinction is crucial: hyperslabbing based on dimensional indices
-or coordinate values is straightforward.
-Using the values of single or multi-dimensional variable to define a
-hyperslab is quite different.
-</p><div class="example">
-<pre class="example">cat > ~/ncap2_foo.nco << 'EOF'
-// Purpose: Save irregular 1-D regions based on variable values
-
-// Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
-/* NB: Single quotes around EOF above turn off shell parameter
- expansion in "here documents". This in turn prevents the
- need for protecting dollarsign characters in NCO scripts with
- backslashes when the script is cut-and-pasted (aka "moused")
- from an editor or e-mail into a shell console window */
-
-/* Copy coordinates and variable(s) of interest into RAM variable(s)
- Benefits:
- 1. ncap2 defines writes all variables on LHS of expression to disk
- Only exception is RAM variables, which are stored in RAM only
- Repeated operations on regular variables takes more time,
- because changes are written to disk copy after every change.
- RAM variables are only changed in RAM so script works faster
- RAM variables can be written to disk at end with ram_write()
- 2. Script permutes variables of interest during processing
- Safer to work with copies that have different names
- This discourages accidental, mistaken use of permuted versions
- 3. Makes this script a more generic template:
- var_in instead of specific variable names everywhere */
-*var_in=one_dmn_rec_var;
-*crd_in=time;
-*dmn_in_sz=$time.size; // [nbr] Size of input arrays
-
-/* Create all other "intermediate" variables as RAM variables
- to prevent them from cluttering the output file.
- Mask flag and sort map are same size as variable of interest */
-*msk_flg=var_in;
-*srt_map=var_in;
-
-/* In this example we mask for all values evenly divisible by 3
- This is the key, problem-specific portion of the template
- Replace this where() condition by that for your problem
- Mask variable is Boolean: 1=Meets condition, 0=Fails condition */
-where(var_in % 3 == 0) msk_flg=1; elsewhere msk_flg=0;
-
-// print("msk_flg = ");print(msk_flg); // For debugging...
-
-/* The sort() routine is overloaded, and takes one or two arguments
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input
- msk_flg is not needed in its original order after sort()
- Hence we use msk_flg as both input to and output from sort()
- Doing this prevents the need to define a new, unneeded variable */
-msk_flg=sort(msk_flg,&srt_map);
-
-// Count number of valid points in mask by summing the one's
-*msk_nbr=msk_flg.total();
-
-// Define output dimension equal in size to number of valid points
-defdim("crd_out",msk_nbr);
-
-/* Now sort the variable of interest using the sort map and remap()
- The output, on the LHS, is the input re-arranged so that all points
- meeting the mask condition are contiguous at the end of the array
- Use same srt_map to hyperslab multiple variables of the same shape
- Remember to apply srt_map to the coordinate variables */
-crd_in=remap(crd_in,srt_map);
-var_in=remap(var_in,srt_map);
-
-/* Hyperslab last msk_nbr values of variable(s) of interest */
-crd_out[crd_out]=crd_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
-var_out[crd_out]=var_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
-
-/* NB: Even though we created all variables possible as RAM variables,
- the original coordinate of interest, time, is written to the ouput.
- I'm not exactly sure why. For now, delete it from the output with:
- ncks -O -x -v time ~/foo.nc ~/foo.nc
- */
-EOF
-ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
-ncks -O -x -v time ~/foo.nc ~/foo.nc
-ncks ~/foo.nc
-</pre></div>
-
-<p>Here is an extended example of how to use <code>ncap2</code> features to
-sort multi-dimensional arrays based on the coordinate values along a
-single dimension.
-</p><div class="example">
-<pre class="example">cat > ~/ncap2_foo.nco << 'EOF'
-/* Purpose: Sort multi-dimensional array based on coordinate values
- This example sorts the variable three_dmn_rec_var(time,lat,lon)
- based on the values of the time coordinate. */
-
-// Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
-// Randomize the time coordinate
-time=10.0*gsl_rng_uniform(time);
-//print("original randomized time =\n");print(time);
-
-/* The sort() routine is overloaded, and takes one or two arguments
- The first argument is a one dimensional array
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input */
-
-time=sort(time,&srt_map);
-//print("sorted time (ascending order) and associated sort map =\n");print(time);print(srt_map);
-
-/* sort() always sorts in ascending order
- The associated sort map therefore re-arranges the original,
- randomized time array into ascending order.
- There are two methods to obtain the descending order the user wants
- 1) We could solve the problem in ascending order (the default)
- and then apply the reverse() method to re-arrange the results.
- 2) We could change the sort map to return things in descending
- order of time and solve the problem directly in descending order. */
-
-// Following shows how to do method one:
-
-/* Expand the sort map to srt_map_3d, the size of the data array
- 1. Use data array to provide right shape for the expanded sort map
- 2. Coerce data array into an integer so srt_map_3d is an integer
- 3. Multiply data array by zero so 3-d map elements are all zero
- 4. Add the 1-d sort map to the 3-d sort map (NCO automatically resizes)
- 5. Add the spatial (lat,lon) offsets to each time index
- 6. de-sort using the srt_map_3d
- 7. Use reverse to obtain descending in time order
- Loops could accomplish the same thing (exercise left for reader)
- However, loops are slow for large datasets */
-
-/* Following index manipulation requires understanding correspondence
- between 1-d (unrolled, memory order of storage) and access into that
- memory as a multidimensional (3-d, in this case) rectangular array.
- Key idea to understand is how dimensionality affects offsets */
-// Copy 1-d sort map into 3-d sort map
-srt_map_3d=(0*int(three_dmn_rec_var))+srt_map;
-// Multiply base offset by factorial of lesser dimensions
-srt_map_3d*=$lat.size*$lon.size;
-lon_idx=array(0,1,$lon);
-lat_idx=array(0,1,$lat)*$lon.size;
-lat_lon_idx[$lat,$lon]=lat_idx+lon_idx;
-srt_map_3d+=lat_lon_idx;
-
-print("sort map 3d =\n");print(srt_map_3d);
-
-// Use remap() to re-map the data
-three_dmn_rec_var=remap(three_dmn_rec_var,srt_map_3d);
-
-// Finally, reverse data so time coordinate is descending
-time=time.reverse($time);
-//print("sorted time (descending order) =\n");print(time);
-three_dmn_rec_var=three_dmn_rec_var.reverse($time);
-
-// Method two: Key difference is srt_map=$time.size-srt_map-1;
-EOF
-ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
-</pre></div>
-
-<a name="grd"></a> <!-- http://nco.sf.net/nco.html#grd -->
-<a name="rrg"></a> <!-- http://nco.sf.net/nco.html#rrg -->
-<a name="rct"></a> <!-- http://nco.sf.net/nco.html#rct -->
-<hr>
-<a name="Irregular-grids"></a>
-<div class="header">
-<p>
-Next: <a href="#Bilinear-interpolation" accesskey="n" rel="next">Bilinear interpolation</a>, Previous: <a href="#Sort-methods" accesskey="p" rel="prev">Sort methods</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Irregular-Grids"></a>
-<h4 class="subsection">4.1.17 Irregular Grids</h4>
-<a name="index-irregular-grids"></a>
-<a name="index-rectangular-grids"></a>
-<a name="index-non_002drectangular-grids"></a>
-<a name="index-non_002dstandard-grids"></a>
-<a name="index-mask"></a>
-<p><acronym>NCO</acronym> is capable of analyzing datasets for many different
-underlying coordinate grid types.
-netCDF was developed for and initially used with grids comprised of
-orthogonal dimensions forming a rectangular coordinate system.
-We call such grids <em>standard</em> grids.
-It is increasingly common for datasets to use metadata to describe
-much more complex grids.
-Let us first define three important coordinate grid properties:
-rectangularity, regularity, and fxm.
-</p>
-<p>Grids are <em>regular</em> if the spacing between adjacent is constant.
-For example, a 4-by-5 degree latitude-longitude grid is regular
-because the spacings between adjacent latitudes (4 degrees<!-- /@w -->) are
-constant as are the (5 degrees<!-- /@w -->) spacings between adjacent
-longitudes.
-Spacing in <em>irregular</em> grids depends on the location along the
-coordinate.
-Grids such as Gaussian grids have uneven spacing in latitude (points
-cluster near the equator) and so are irregular.
-</p>
-<p>Grids are <em>rectangular</em> if the number of elements in any
-dimension is not a function of any other dimension.
-For example, a T42 Gaussian latitude-longitude grid is rectangular
-because there are the same number of longitudes (128) for each of the
-(64) latitudes.
-Grids are <em>non-rectangular</em> if the elements in any dimension
-depend on another dimension.
-Non-rectangular grids present many special challenges to
-analysis software like <acronym>NCO</acronym>.
-</p>
-<p>Wrapped coordinates (see <a href="#Wrapped-Coordinates">Wrapped Coordinates</a>), such as longitude,
-are independent of these grid properties (regularity,
-rectangularity).
-</p>
-<a name="index-wrapped-coordinates-2"></a>
-<p>The preferred <acronym>NCO</acronym> technique to analyze data on non-standard
-coordinate grids is to create a region mask with <code>ncap2</code>, and
-then to use the mask within <code>ncap2</code> for variable-specific
-processing, and/or with other operators (e.g., <code>ncwa</code>,
-<code>ncdiff</code>) for entire file processing.
-</p>
-<p>Before describing the construction of masks, let us review how
-irregularly gridded geoscience data are described.
-Say that latitude and longitude are stored as <var>R</var>-dimensional
-arrays and the product of the dimension sizes is the total number of
-elements N in the other variables.
-Geoscience applications tend to use <em><var>R</var>=1</em>,
-<em><var>R</var>=2</em>, and <em><var>R</var>=3</em>.
-</p>
-<p>If the grid is has no simple representation (e.g., discontinuous) then
-it makes sense to store all coordinates as 1D arrays with the same
-size as the number of grid points.
-These gridpoints can be completely independent of all the other (own
-weight, area, etc.).
-</p>
-<p><var>R</var>=1: lat(number_of_gridpoints) and lon(number_of_gridpoints)
-</p>
-<p>If the horizontal grid is time-invariant then <var>R</var>=2 is common:
-</p>
-<p><var>R</var>=2: lat(south_north,east_west) and lon(south_north,east_west)
-</p>
-<p>The Weather and Research Forecast (<acronym>WRF</acronym>) model uses <var>R</var>=3:
-</p>
-<p><var>R</var>=3: lat(time,south_north,east_west), lon(time,south_north,east_west)
-</p>
-<p>and so supports grids that change with time.
-</p>
-<p>Grids with <var>R</var> > 1 often use missing values to indicated empty points.
-For example, so-called “staggered grids” will use fewer east_west
-points near the poles and more near the equator. netCDF only accepts
-rectangular arrays so space must be allocated for the maximum number
-of east_west points at all latitudes. Then the application writes
-missing values into the unused points near the poles.
-</p>
-<p>We demonstrate the <code>ncap2</code> analysis technique for irregular
-regions by constructing a mask for an <var>R</var>=2 grid.
-We wish to find, say, the mean temperature within
-[<var>lat_min</var>,<var>lat_max</var>] and [<var>lon_min</var>,<var>lon_max</var>]:
-</p><div class="example">
-<pre class="example">ncap2 -s 'mask_var= (lat >= lat_min && lat <= lat_max) && \
- (lon >= lon_min && lon <= lon_max);' in.nc out.nc
-</pre></div>
-<p>Arbitrarily shaped regions can be defined by more complex conditional
-statements.
-Once defined, masks can be applied to specific variables,
-and to entire files:
-</p><div class="example">
-<pre class="example">ncap2 -s 'temperature_avg=(temperature*mask_var).avg()' in.nc out.nc
-ncwa -a lat,lon -m mask_var -w area in.nc out.nc
-</pre></div>
-<p>Crafting such commands on the command line is possible though unwieldy.
-In such cases, a script is often cleaner and allows you to document the
-procedure:
-</p><div class="example">
-<pre class="verbatim">cat > ncap2.in << 'EOF'
-mask_var = (lat >= lat_min && lat <= lat_max) && (lon >= lon_min && > lon <= lon_max);
-if(mask_var.total() > 0){ // Check that mask contains some valid values
- temperature_avg=(temperature*mask_var).avg(); // Average temperature
- temperature_max=(temperature*mask_var).max(); // Maximum temperature
-}
-EOF
-ncap2 -S ncap2.in in.nc out.nc
-</pre></div>
-
-<a name="index-WRF"></a>
-<p>Grids like those produced by the <acronym>WRF</acronym> model are complex because
-one must use global metadata to determine the grid staggering and
-offsets to translate <code>XLAT</code> and <code>XLONG</code> into real latitudes,
-longitudes, and missing points.
-The <acronym>WRF</acronym> grid documentation should describe this.
-For <acronym>WRF</acronym> files creating regional masks looks, in general, like
-</p><div class="example">
-<pre class="example">mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);
-</pre></div>
-
-<p>A few notes:
-Irregular regions are the union of arrays lat/lon_min/max’s.
-The mask procedure is identical for all <var>R</var>.
-</p>
-<a name="bln_ntp"></a> <!-- http://nco.sf.net/nco.html#bln_ntp -->
-<a name="bil_int"></a> <!-- http://nco.sf.net/nco.html#bil_int --><hr>
-<a name="Bilinear-interpolation"></a>
-<div class="header">
-<p>
-Next: <a href="#GSL-special-functions" accesskey="n" rel="next">GSL special functions</a>, Previous: <a href="#Irregular-grids" accesskey="p" rel="prev">Irregular grids</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Bilinear-interpolation-1"></a>
-<h4 class="subsection">4.1.18 Bilinear interpolation</h4>
-<p>As of version 4.0.0 <acronym>NCO</acronym> has internal routines to
-perform bilinear interpolation on gridded data sets.
-In mathematics, bilinear interpolation is an extension of linear
-interpolation for interpolating functions of two variables on a regular
-grid.
-The idea is to perform linear interpolation first in one direction, and
-then again in the other direction.
-</p>
-<p>Suppose we have an irregular grid of data <code>temperature[lat,lon]</code>,
-with co-ordinate vars <code>lat[lat], lon[lon]</code>.
-We wish to find the temperature at an arbitary point [<var>X</var>,<var>Y</var>]
-within the grid.
-If we can locate lat_min,lat_max and lon_min,lon_max such that
-<code>lat_min <= X <= lat_max</code> and <code>lon_min <= Y <= lon_max</code>
-then we can interpolate in two dimensions the temperature at
-[<var>X</var>,<var>Y</var>].
-</p>
-<p>The general form of the <code>ncap2</code> interpolation function is
-</p><div class="example">
-<pre class="example">var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_in_x,grid_in_y)
-</pre></div>
-<p>where
-</p><dl compact="compact">
-<dt><code>grid_in</code></dt>
-<dd><p>Input function data.
-Usually a two dimensional variable.
-It must be of size <code>grid_in_x.size()*grid_in_y.size()</code>
-</p></dd>
-<dt><code>grid_out</code></dt>
-<dd><p>This variable is the shape of <code>var_out</code>.
-Usually a two dimensional variable.
-It must be of size <code>grid_out_x.size()*grid_out_y.size()</code>
-</p></dd>
-<dt><code>grid_out_x</code></dt>
-<dd><p><var>X</var> output values
-</p></dd>
-<dt><code>grid_out_y</code></dt>
-<dd><p><var>Y</var> output values
-</p></dd>
-<dt><code>grid_in_x</code></dt>
-<dd><p><var>X</var> input values values. Must be monotonic (increasing or decreasing).
-</p></dd>
-<dt><code>grid_in_y</code></dt>
-<dd><p><var>Y</var> input values values. Must be monotonic (increasing or decreasing).
-</p></dd>
-</dl>
-<p>Prior to calculations all arguments are converted to type
-<code>NC_DOUBLE</code>.
-After calculations <code>var_out</code> is converted to the input type of
-<code>grid_in</code>.
-</p>
-<p>Suppose the first part of an <code>ncap2</code> script is
-</p><div class="example">
-<pre class="verbatim">defdim("X",4);
-defdim("Y",5);
-
-// Temperature
-T_in[$X,$Y]=
- {100, 200, 300, 400, 500,
- 101, 202, 303, 404, 505,
- 102, 204, 306, 408, 510,
- 103, 206, 309, 412, 515.0 };
-
-// Coordinate variables
-x_in[$X]={0.0,1.0,2.0,3.01};
-y_in[$Y]={1.0,2.0,3.0,4.0,5};
-</pre></div>
-<p>Now we interpolate with the following variables:
-</p><div class="example">
-<pre class="verbatim">defdim("Xn",3);
-defdim("Yn",4);
-T_out[$Xn,$Yn]=0.0;
-x_out[$Xn]={0.0,0.02,3.01};
-y_out[$Yn]={1.1,2.0,3,4};
-
-var_out=bilinear_interp(T_in,T_out,x_out,y_out,x_in,y_in);
-print(var_out);
-// 110, 200, 300, 400,
-// 110.022, 200.04, 300.06, 400.08,
-// 113.3, 206, 309, 412 ;
-</pre></div>
-
-<p>It is possible to interpolate a single point:
-</p><div class="example">
-<pre class="example">var_out=bilinear_interp(T_in,0.0,3.0,4.99,x_in,y_in);
-print(var_out);
-// 513.920594059406
-</pre></div>
-
-<p><strong>Wrapping and Extrapolation</strong> <br>
-The function <code>bilinear_interp_wrap()</code> takes the same
-arguments as <code>bilinear_interp()</code> but performs wrapping (<var>Y</var>)
-and extrapolation (<var>X</var>) for points off the edge of the grid.
-If the given range of longitude is say (25-335) and we have a point at
-20 degrees, then the endpoints of the range are used for the
-interpolation.
-This is what wrapping means.
-For wrapping to occur <var>Y</var> must be longitude and must be in the range
-(0,360) or (-180,180).
-There are no restrictions on the longitude (<var>X</var>) values, though
-typically these are in the range (-90,90).
-This <code>ncap2</code> script illustrates both wrapping and extrapolation
-of end points:
-</p><div class="example">
-<pre class="verbatim">defdim("lat_in",6);
-defdim("lon_in",5);
-
-// Coordinate input vars
-lat_in[$lat_in]={-80,-40,0,30,60.0,85.0};
-lon_in[$lon_in]={30, 110, 190, 270, 350.0};
-
-T_in[$lat_in,$lon_in]=
- {10,40,50,30,15,
- 12,43,52,31,16,
- 14,46,54,32,17,
- 16,49,56,33,18,
- 18,52,58,34,19,
- 20,55,60,35,20.0 };
-
-defdim("lat_out",4);
-defdim("lon_out",3);
-
-// Coordinate variables
-lat_out[$lat_out]={-90,0,70,88.0};
-lon_out[$lon_out]={0,190,355.0};
-
-T_out[$lat_out,$lon_out]=0.0;
-
-T_out=bilinear_interp_wrap(T_in,T_out,lat_out,lon_out,lat_in,lon_in);
-print(T_out);
-// 13.4375, 49.5, 14.09375,
-// 16.25, 54, 16.625,
-// 19.25, 58.8, 19.325,
-// 20.15, 60.24, 20.135 ;
-</pre></div>
-
-<a name="gsl"></a> <!-- http://nco.sf.net/nco.html#gsl --><hr>
-<a name="GSL-special-functions"></a>
-<div class="header">
-<p>
-Next: <a href="#GSL-interpolation" accesskey="n" rel="next">GSL interpolation</a>, Previous: <a href="#Bilinear-interpolation" accesskey="p" rel="prev">Bilinear interpolation</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="GSL-special-functions-1"></a>
-<h4 class="subsection">4.1.19 GSL special functions</h4>
-<a name="index-GSL-1"></a>
-<p>As of version 3.9.6 (released January, 2009), <acronym>NCO</acronym>
-can link to the <acronym>GNU</acronym> Scientific Library (<acronym>GSL</acronym>).
-<code>ncap2</code> can access most <acronym>GSL</acronym> special functions including
-Airy, Bessel, error, gamma, beta, hypergeometric, and Legendre functions
-and elliptical integrals.
-<acronym>GSL</acronym> must be version 1.4<!-- /@w --> or later.
-To list the <acronym>GSL</acronym> functions available with your <acronym>NCO</acronym>
-build, use <code>ncap2 -f | grep ^gsl</code>.
-</p>
-<p>The function names used by <acronym>ncap2</acronym> mirror their
-<acronym>GSL</acronym> names.
-The <acronym>NCO</acronym> wrappers for <acronym>GSL</acronym> functions automatically
-call the error-handling version of the <acronym>GSL</acronym> function when
-available
-<a name="DOCF54" href="#FOOT54"><sup>54</sup></a>.
-This allows <acronym>NCO</acronym> to return a missing value when the
-<acronym>GSL</acronym> library encounters a domain error or a floating point
-exception.
-The slow-down due to calling the error-handling version of the
-<acronym>GSL</acronym> numerical functions was found to be negligible (please let
-us know if you find otherwise).
-</p>
-<a name="index-gamma-function"></a>
-<a name="index-gsl_005fsf_005fgamma"></a>
-<p>Consider the gamma function.<br>
-The <acronym>GSL</acronym> function prototype is <br>
-<code>int gsl_sf_gamma_e(const double x, gsl_sf_result * result)</code>
-The <code>ncap2</code> script would be:
-</p><div class="example">
-<pre class="verbatim">lon_in[lon]={-1,0.1,0,2,0.3};
-lon_out=gsl_sf_gamma(lon_in);
-lon_out= _, 9.5135, 4.5908, 2.9915
-</pre></div>
-
-<p>The first value is set to <code>_FillValue</code> since the gamma
-function is undefined for negative integers.
-If the input variable has a missing value then this value is used.
-Otherwise, the default double fill value is used
-(defined in the netCDF header <samp>netcdf.h</samp> as
-<code>NC_FILL_DOUBLE = 9.969e+36</code>).
-</p>
-<a name="index-Bessel-function"></a>
-<a name="index-gsl_005fsf_005fbessel_005fJn"></a>
-<p>Consider a call to a Bessel function with <acronym>GSL</acronym>
-prototype<br>
-<code>int gsl_sf_bessel_Jn_e(int n, double x, gsl_sf_result * result)</code>
-</p>
-<p>An <code>ncap2</code> script would be
-</p><div class="example">
-<pre class="example">lon_out=gsl_sf_bessel_Jn(2,lon_in);
-lon_out=0.11490, 0.0012, 0.00498, 0.011165
-</pre></div>
-<p>This computes the Bessel function of order <var>n=2</var> for every value in
-<code>lon_in</code>.
-The Bessel order argument, an integer, can also be a non-scalar
-variable, i.e., an array.
-</p><div class="example">
-<pre class="verbatim">n_in[lon]={0,1,2,3};
-lon_out=gsl_sf_bessel_Jn(n_in,0.5);
-lon_out= 0.93846, 0.24226, 0.03060, 0.00256
-</pre></div>
-
-<p>Arguments to <acronym>GSL</acronym> wrapper functions in <code>ncap2</code>
-must conform to one another, i.e., they must share the same sub-set of
-dimensions.
-For example: <code>three_out=gsl_sf_bessel_Jn(n_in,three_dmn_var_dbl)</code>
-is valid because the variable <code>three_dmn_var_dbl</code> has a <var>lon</var>
-dimension, so <code>n_in</code> in can be broadcast to conform to
-<code>three_dmn_var_dbl</code>.
-However <code>time_out=gsl_sf_bessel_Jn(n_in,time)</code> is invalid.
-</p>
-<a name="index-Elliptic-integrals"></a>
-<p>Consider the elliptical integral with prototype
-<code>int gsl_sf_ellint_RD_e(double x, double y, double z, gsl_mode_t mode, gsl_sf_result * result)</code>
-</p><div class="example">
-<pre class="example">three_out=gsl_sf_ellint_RD(0.5,time,three_dmn_var_dbl);
-</pre></div>
-
-<p>The three arguments are all conformable so the above <code>ncap2</code> call is valid. The mode argument in the function prototype controls the convergence of the algorithm. It also appears in the Airy Function prototypes. It can be set by defining the environment variable <code>GSL_PREC_MODE</code>. If unset it defaults to the value <code>GSL_PREC_DOUBLE</code>. See the <acronym>GSL</acronym> manual for more details.
-</p><div class="example">
-<pre class="example">export GSL_PREC_MODE=0 // GSL_PREC_DOUBLE
-export GSL_PREC_MODE=1 // GSL_PREC_SINGLE
-export GSL_PREC_MODE=2 // GSL_PREC_APPROX
-</pre></div>
-
-<p>The <code>ncap2</code> wrappers to the array functions are
-slightly different.
-Consider the following <acronym>GSL</acronym> prototype <br>
-<code>int gsl_sf_bessel_Jn_array(int nmin, int nmax, double x, double *result_array)</code>
-</p><div class="example">
-<pre class="example">b1=lon.double();
-x=0.5;
-status=gsl_sf_bessel_Jn_array(1,4,x,&b1);
-print(status);
-b1=0.24226,0.0306,0.00256,0.00016;
-</pre></div>
-<p>This calculates the Bessel function of <var>x</var>=0.5 for
-<var>n</var>=1 to 4.
-The first three arguments are scalar values.
-If a non-scalar variable is supplied as an argument then only the first
-value is used.
-The final argument is the variable where the results are stored (NB: the
-<code>&</code> indicates this is a call by reference).
-This final argument must be of type <code>double</code> and must be of least
-size <var>nmax-nmin+1</var>.
-If either of these conditions is not met then then the function
-returns an error message.
-The function/wrapper returns a status flag.
-Zero indicates success.
-</p>
-<p>Consider another array function <br>
-<code>int gsl_sf_legendre_Pl_array( int lmax, double x, double *result_array);</code>
-<a name="index-Legendre-polynomial"></a>
-<a name="index-gsl_005fsf_005flegendre_005fPl"></a>
-</p><div class="example">
-<pre class="example">a1=time.double();
-x=0.3;
-status=gsl_sf_legendre_Pl_array(a1.size()-1, x,&a1);
-print(status);
-</pre></div>
-<p>This call calculates <var>P_l</var>(0.3) for <var>l</var>=0..9.
-Note that <var>|x|<=1</var>, otherwise there will be a domain error.
-See the <acronym>GSL</acronym>
-documentation for more details.
-</p>
-<p>The <acronym>GSL</acronym> functions implemented in <acronym>NCO</acronym> are
-listed in the table below.
-This table is correct for <acronym>GSL</acronym> version 1.10.
-To see what functions are available on your build run the command
-<code>ncap2 -f |grep ^gsl</code> .
-To see this table along with the <acronym>GSL</acronym> <span class="nolinebreak">C-function</span><!-- /@w -->
-prototypes look at the spreadsheet <strong>doc/nco_gsl.ods</strong>. <br> <br>
-</p>
-<table>
-<tr><td width="35%"><strong>GSL NAME</strong></td><td width="5%"><strong>I</strong></td><td width="60%"><strong>NCAP FUNCTION CALL</strong></td></tr>
-<tr><td width="35%">gsl_sf_airy_Ai_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Ai(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Bi_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Bi(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Ai_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Ai_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Bi_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Bi_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Ai_deriv_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Ai_deriv(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Bi_deriv_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Bi_deriv(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Ai_deriv_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Ai_deriv_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_Bi_deriv_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_Bi_deriv_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_zero_Ai_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_zero_Ai(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_zero_Bi_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_zero_Bi(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_zero_Ai_deriv_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_zero_Ai_deriv(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_airy_zero_Bi_deriv_e</td><td width="5%">Y</td><td width="60%">gsl_sf_airy_zero_Bi_deriv(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_J0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_J0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_J1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_J1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Jn_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Jn(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Jn_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_Jn_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Y0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Y0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Y1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Y1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Yn_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Yn(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Yn_array</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Yn_array</td></tr>
-<tr><td width="35%">gsl_sf_bessel_I0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_I1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_In_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_In(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_In_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_In_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_I0_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I0_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_I1_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I1_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_In_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_In_scaled(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_In_scaled_array</td><td width="5%">Y</td><td width="60%">staus=gsl_sf_bessel_In_scaled_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_K0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_K1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Kn_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Kn(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Kn_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_Kn_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_K0_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K0_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_K1_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K1_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Kn_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Kn_scaled(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Kn_scaled_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_Kn_scaled_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_j0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_J0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_j1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_J1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_j2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_j2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_jl_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_jl(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_jl_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_jl_array(int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_jl_steed_array</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_jl_steed_array</td></tr>
-<tr><td width="35%">gsl_sf_bessel_y0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Y0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_y1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Y1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_y2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_y2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_yl_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_yl(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_yl_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_yl_array(int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_i0_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I0_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_i1_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_I1_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_i2_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_i2_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_il_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_il_scaled(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_il_scaled_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_il_scaled_array(int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_k0_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K0_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_k1_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_K1_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_k2_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_k2_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_kl_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_kl_scaled(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_kl_scaled_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_bessel_kl_scaled_array(int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Jnu_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Jnu(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Ynu_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Ynu(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_sequence_Jnu_e</td><td width="5%">N</td><td width="60%">gsl_sf_bessel_sequence_Jnu</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Inu_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Inu_scaled(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Inu_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Inu(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Knu_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Knu_scaled(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_Knu_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_Knu(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_lnKnu_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_lnKnu(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_zero_J0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_zero_J0(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_zero_J1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_bessel_zero_J1(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_bessel_zero_Jnu_e</td><td width="5%">N</td><td width="60%">gsl_sf_bessel_zero_Jnu</td></tr>
-<tr><td width="35%">gsl_sf_clausen_e</td><td width="5%">Y</td><td width="60%">gsl_sf_clausen(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hydrogenicR_1_e</td><td width="5%">N</td><td width="60%">gsl_sf_hydrogenicR_1</td></tr>
-<tr><td width="35%">gsl_sf_hydrogenicR_e</td><td width="5%">N</td><td width="60%">gsl_sf_hydrogenicR</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_wave_FG_e</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_wave_FG</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_wave_F_array</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_wave_F_array</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_wave_FG_array</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_wave_FG_array</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_wave_FGp_array</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_wave_FGp_array</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_wave_sphF_array</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_wave_sphF_array</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_CL_e</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_CL</td></tr>
-<tr><td width="35%">gsl_sf_coulomb_CL_array</td><td width="5%">N</td><td width="60%">gsl_sf_coulomb_CL_array</td></tr>
-<tr><td width="35%">gsl_sf_coupling_3j_e</td><td width="5%">N</td><td width="60%">gsl_sf_coupling_3j</td></tr>
-<tr><td width="35%">gsl_sf_coupling_6j_e</td><td width="5%">N</td><td width="60%">gsl_sf_coupling_6j</td></tr>
-<tr><td width="35%">gsl_sf_coupling_RacahW_e</td><td width="5%">N</td><td width="60%">gsl_sf_coupling_RacahW</td></tr>
-<tr><td width="35%">gsl_sf_coupling_9j_e</td><td width="5%">N</td><td width="60%">gsl_sf_coupling_9j</td></tr>
-<tr><td width="35%">gsl_sf_coupling_6j_INCORRECT_e</td><td width="5%">N</td><td width="60%">gsl_sf_coupling_6j_INCORRECT</td></tr>
-<tr><td width="35%">gsl_sf_dawson_e</td><td width="5%">Y</td><td width="60%">gsl_sf_dawson(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_3(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_4_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_4(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_5_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_5(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_debye_6_e</td><td width="5%">Y</td><td width="60%">gsl_sf_debye_6(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_dilog_e</td><td width="5%">N</td><td width="60%">gsl_sf_dilog</td></tr>
-<tr><td width="35%">gsl_sf_complex_dilog_xy_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_dilog_xy_e</td></tr>
-<tr><td width="35%">gsl_sf_complex_dilog_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_dilog</td></tr>
-<tr><td width="35%">gsl_sf_complex_spence_xy_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_spence_xy_e</td></tr>
-<tr><td width="35%">gsl_sf_multiply_e</td><td width="5%">N</td><td width="60%">gsl_sf_multiply</td></tr>
-<tr><td width="35%">gsl_sf_multiply_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_multiply_err</td></tr>
-<tr><td width="35%">gsl_sf_ellint_Kcomp_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_Kcomp(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_Ecomp_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_Ecomp(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_Pcomp_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_Pcomp(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_Dcomp_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_Dcomp(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_F_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_F(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_E_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_E(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_P_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_P(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_D_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_D(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_RC_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_RC(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_RD_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_RD(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_RF_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_RF(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_ellint_RJ_e</td><td width="5%">Y</td><td width="60%">gsl_sf_ellint_RJ(dbl_expr,dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_elljac_e</td><td width="5%">N</td><td width="60%">gsl_sf_elljac</td></tr>
-<tr><td width="35%">gsl_sf_erfc_e</td><td width="5%">Y</td><td width="60%">gsl_sf_erfc(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_log_erfc_e</td><td width="5%">Y</td><td width="60%">gsl_sf_log_erfc(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_erf_e</td><td width="5%">Y</td><td width="60%">gsl_sf_erf(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_erf_Z_e</td><td width="5%">Y</td><td width="60%">gsl_sf_erf_Z(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_erf_Q_e</td><td width="5%">Y</td><td width="60%">gsl_sf_erf_Q(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hazard_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hazard(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exp_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exp(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exp_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_exp_e10</td></tr>
-<tr><td width="35%">gsl_sf_exp_mult_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exp_mult(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exp_mult_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_exp_mult_e10</td></tr>
-<tr><td width="35%">gsl_sf_expm1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expm1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exprel_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exprel(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exprel_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exprel_2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exprel_n_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exprel_n(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exp_err_e</td><td width="5%">Y</td><td width="60%">gsl_sf_exp_err(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_exp_err_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_exp_err_e10</td></tr>
-<tr><td width="35%">gsl_sf_exp_mult_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_exp_mult_err</td></tr>
-<tr><td width="35%">gsl_sf_exp_mult_err_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_exp_mult_err_e10</td></tr>
-<tr><td width="35%">gsl_sf_expint_E1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_E1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_E2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_E2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_En_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_En(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_E1_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_E1_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_E2_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_E2_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_En_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_En_scaled(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_Ei_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_Ei(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_Ei_scaled_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_Ei_scaled(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_Shi_e</td><td width="5%">Y</td><td width="60%">gsl_sf_Shi(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_Chi_e</td><td width="5%">Y</td><td width="60%">gsl_sf_Chi(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_expint_3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_expint_3(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_Si_e</td><td width="5%">Y</td><td width="60%">gsl_sf_Si(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_Ci_e</td><td width="5%">Y</td><td width="60%">gsl_sf_Ci(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_atanint_e</td><td width="5%">Y</td><td width="60%">gsl_sf_atanint(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_m1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_m1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_int(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_mhalf_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_mhalf(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_half_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_half(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_3half_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_3half(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fermi_dirac_inc_0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fermi_dirac_inc_0(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lngamma_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lngamma(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lngamma_sgn_e</td><td width="5%">N</td><td width="60%">gsl_sf_lngamma_sgn</td></tr>
-<tr><td width="35%">gsl_sf_gamma_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gamma(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gammastar_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gammastar(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gammainv_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gammainv(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lngamma_complex_e</td><td width="5%">N</td><td width="60%">gsl_sf_lngamma_complex</td></tr>
-<tr><td width="35%">gsl_sf_taylorcoeff_e</td><td width="5%">Y</td><td width="60%">gsl_sf_taylorcoeff(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_fact_e</td><td width="5%">Y</td><td width="60%">gsl_sf_fact(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_doublefact_e</td><td width="5%">Y</td><td width="60%">gsl_sf_doublefact(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lnfact_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lnfact(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lndoublefact_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lndoublefact(uint_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lnchoose_e</td><td width="5%">N</td><td width="60%">gsl_sf_lnchoose</td></tr>
-<tr><td width="35%">gsl_sf_choose_e</td><td width="5%">N</td><td width="60%">gsl_sf_choose</td></tr>
-<tr><td width="35%">gsl_sf_lnpoch_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lnpoch(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lnpoch_sgn_e</td><td width="5%">N</td><td width="60%">gsl_sf_lnpoch_sgn</td></tr>
-<tr><td width="35%">gsl_sf_poch_e</td><td width="5%">Y</td><td width="60%">gsl_sf_poch(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_pochrel_e</td><td width="5%">Y</td><td width="60%">gsl_sf_pochrel(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gamma_inc_Q_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gamma_inc_Q(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gamma_inc_P_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gamma_inc_P(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gamma_inc_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gamma_inc(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lnbeta_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lnbeta(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lnbeta_sgn_e</td><td width="5%">N</td><td width="60%">gsl_sf_lnbeta_sgn</td></tr>
-<tr><td width="35%">gsl_sf_beta_e</td><td width="5%">Y</td><td width="60%">gsl_sf_beta(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_beta_inc_e</td><td width="5%">N</td><td width="60%">gsl_sf_beta_inc</td></tr>
-<tr><td width="35%">gsl_sf_gegenpoly_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gegenpoly_1(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gegenpoly_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gegenpoly_2(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gegenpoly_3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_gegenpoly_3(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_gegenpoly_n_e</td><td width="5%">N</td><td width="60%">gsl_sf_gegenpoly_n</td></tr>
-<tr><td width="35%">gsl_sf_gegenpoly_array</td><td width="5%">Y</td><td width="60%">gsl_sf_gegenpoly_array</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_0F1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_0F1(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_1F1_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_1F1_int(int_expr,int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_1F1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_1F1(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_U_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_U_int(int_expr,int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_U_int_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_hyperg_U_int_e10</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_U_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_U(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_U_e10_e</td><td width="5%">N</td><td width="60%">gsl_sf_hyperg_U_e10</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_2F1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_2F1(dbl_expr,dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_2F1_conj_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_2F1_conj(dbl_expr,dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_2F1_renorm_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_2F1_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_2F1_conj_renorm_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_2F1_conj_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hyperg_2F0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hyperg_2F0(dbl_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_laguerre_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_laguerre_1(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_laguerre_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_laguerre_2(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_laguerre_3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_laguerre_3(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_laguerre_n_e</td><td width="5%">Y</td><td width="60%">gsl_sf_laguerre_n(int_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lambert_W0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lambert_W0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_lambert_Wm1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_lambert_Wm1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Pl_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_Pl(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Pl_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_legendre_Pl_array(int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Pl_deriv_array</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_Pl_deriv_array</td></tr>
-<tr><td width="35%">gsl_sf_legendre_P1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_P1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_P2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_P2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_P3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_P3(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Q0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_Q0(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Q1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_Q1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Ql_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_Ql(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Plm_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_Plm(int_expr,int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Plm_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_legendre_Plm_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_Plm_deriv_array</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_Plm_deriv_array</td></tr>
-<tr><td width="35%">gsl_sf_legendre_sphPlm_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_sphPlm(int_expr,int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_sphPlm_array</td><td width="5%">Y</td><td width="60%">status=gsl_sf_legendre_sphPlm_array(int,int,double,&var_out)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_sphPlm_deriv_array</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_sphPlm_deriv_array</td></tr>
-<tr><td width="35%">gsl_sf_legendre_array_size</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_array_size</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_half_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_half(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_mhalf_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_mhalf(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_0(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_1(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_sph_reg_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_sph_reg(int_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_conicalP_cyl_reg_e</td><td width="5%">Y</td><td width="60%">gsl_sf_conicalP_cyl_reg(int_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_H3d_0_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_H3d_0(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_H3d_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_H3d_1(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_H3d_e</td><td width="5%">Y</td><td width="60%">gsl_sf_legendre_H3d(int_expr,dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_legendre_H3d_array</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_H3d_array</td></tr>
-<tr><td width="35%">gsl_sf_legendre_array_size</td><td width="5%">N</td><td width="60%">gsl_sf_legendre_array_size</td></tr>
-<tr><td width="35%">gsl_sf_log_e</td><td width="5%">Y</td><td width="60%">gsl_sf_log(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_log_abs_e</td><td width="5%">Y</td><td width="60%">gsl_sf_log_abs(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_complex_log_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_log</td></tr>
-<tr><td width="35%">gsl_sf_log_1plusx_e</td><td width="5%">Y</td><td width="60%">gsl_sf_log_1plusx(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_log_1plusx_mx_e</td><td width="5%">Y</td><td width="60%">gsl_sf_log_1plusx_mx(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_a_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_a_array</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_b_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_b_array</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_a</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_a</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_b</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_b</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_a_coeff</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_a_coeff</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_b_coeff</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_b_coeff</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_ce</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_ce</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_se</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_se</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_ce_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_ce_array</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_se_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_se_array</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_Mc</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_Mc</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_Ms</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_Ms</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_Mc_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_Mc_array</td></tr>
-<tr><td width="35%">gsl_sf_mathieu_Ms_array</td><td width="5%">N</td><td width="60%">gsl_sf_mathieu_Ms_array</td></tr>
-<tr><td width="35%">gsl_sf_pow_int_e</td><td width="5%">N</td><td width="60%">gsl_sf_pow_int</td></tr>
-<tr><td width="35%">gsl_sf_psi_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi_int(int_expr)</td></tr>
-<tr><td width="35%">gsl_sf_psi_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_psi_1piy_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi_1piy(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_complex_psi_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_psi</td></tr>
-<tr><td width="35%">gsl_sf_psi_1_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi_1_int(int_expr)</td></tr>
-<tr><td width="35%">gsl_sf_psi_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi_1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_psi_n_e</td><td width="5%">Y</td><td width="60%">gsl_sf_psi_n(int_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_synchrotron_1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_synchrotron_1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_synchrotron_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_synchrotron_2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_transport_2_e</td><td width="5%">Y</td><td width="60%">gsl_sf_transport_2(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_transport_3_e</td><td width="5%">Y</td><td width="60%">gsl_sf_transport_3(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_transport_4_e</td><td width="5%">Y</td><td width="60%">gsl_sf_transport_4(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_transport_5_e</td><td width="5%">Y</td><td width="60%">gsl_sf_transport_5(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_sin_e</td><td width="5%">N</td><td width="60%">gsl_sf_sin</td></tr>
-<tr><td width="35%">gsl_sf_cos_e</td><td width="5%">N</td><td width="60%">gsl_sf_cos</td></tr>
-<tr><td width="35%">gsl_sf_hypot_e</td><td width="5%">N</td><td width="60%">gsl_sf_hypot</td></tr>
-<tr><td width="35%">gsl_sf_complex_sin_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_sin</td></tr>
-<tr><td width="35%">gsl_sf_complex_cos_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_cos</td></tr>
-<tr><td width="35%">gsl_sf_complex_logsin_e</td><td width="5%">N</td><td width="60%">gsl_sf_complex_logsin</td></tr>
-<tr><td width="35%">gsl_sf_sinc_e</td><td width="5%">N</td><td width="60%">gsl_sf_sinc</td></tr>
-<tr><td width="35%">gsl_sf_lnsinh_e</td><td width="5%">N</td><td width="60%">gsl_sf_lnsinh</td></tr>
-<tr><td width="35%">gsl_sf_lncosh_e</td><td width="5%">N</td><td width="60%">gsl_sf_lncosh</td></tr>
-<tr><td width="35%">gsl_sf_polar_to_rect</td><td width="5%">N</td><td width="60%">gsl_sf_polar_to_rect</td></tr>
-<tr><td width="35%">gsl_sf_rect_to_polar</td><td width="5%">N</td><td width="60%">gsl_sf_rect_to_polar</td></tr>
-<tr><td width="35%">gsl_sf_sin_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_sin_err</td></tr>
-<tr><td width="35%">gsl_sf_cos_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_cos_err</td></tr>
-<tr><td width="35%">gsl_sf_angle_restrict_symm_e</td><td width="5%">N</td><td width="60%">gsl_sf_angle_restrict_symm</td></tr>
-<tr><td width="35%">gsl_sf_angle_restrict_pos_e</td><td width="5%">N</td><td width="60%">gsl_sf_angle_restrict_pos</td></tr>
-<tr><td width="35%">gsl_sf_angle_restrict_symm_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_angle_restrict_symm_err</td></tr>
-<tr><td width="35%">gsl_sf_angle_restrict_pos_err_e</td><td width="5%">N</td><td width="60%">gsl_sf_angle_restrict_pos_err</td></tr>
-<tr><td width="35%">gsl_sf_zeta_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_zeta_int(int_expr)</td></tr>
-<tr><td width="35%">gsl_sf_zeta_e</td><td width="5%">Y</td><td width="60%">gsl_sf_zeta(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_zetam1_e</td><td width="5%">Y</td><td width="60%">gsl_sf_zetam1(dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_zetam1_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_zetam1_int(int_expr)</td></tr>
-<tr><td width="35%">gsl_sf_hzeta_e</td><td width="5%">Y</td><td width="60%">gsl_sf_hzeta(dbl_expr,dbl_expr)</td></tr>
-<tr><td width="35%">gsl_sf_eta_int_e</td><td width="5%">Y</td><td width="60%">gsl_sf_eta_int(int_expr)</td></tr>
-<tr><td width="35%">gsl_sf_eta_e</td><td width="5%">Y</td><td width="60%">gsl_sf_eta(dbl_expr)</td></tr>
-</table>
-
-<a name="gsl_int"></a> <!-- http://nco.sf.net/nco.html#gsl_int --><hr>
-<a name="GSL-interpolation"></a>
-<div class="header">
-<p>
-Next: <a href="#GSL-least_002dsquares-fitting" accesskey="n" rel="next">GSL least-squares fitting</a>, Previous: <a href="#GSL-special-functions" accesskey="p" rel="prev">GSL special functions</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="GSL-interpolation-1"></a>
-<h4 class="subsection">4.1.20 GSL interpolation</h4>
-<a name="index-GSL-2"></a>
-<p>As of version 3.9.9 (released July, 2009), <acronym>NCO</acronym> has wrappers to the <acronym>GSL</acronym> interpolation functions.
-</p>
-<p>Given a set of data points (x1,y1)...(xn, yn) the <acronym>GSL</acronym> functions computes a continuous interpolating function <acronym>Y(x)</acronym> such that <acronym>Y(xi) = yi</acronym>. The interpolation is piecewise smooth, and its behavior at the end-points is determined by the type of interpolation used. For more information consult the <acronym>GSL</acronym> manual.
-</p>
-<p>Interpolation with <code>ncap2</code> is a two stage process. In the first stage, a <acronym>RAM</acronym> variable is created from the chosen interpolating function and the data set. This <acronym>RAM</acronym> variable holds in memory a <acronym>GSL</acronym> interpolation object. In the second stage, points along the interpolating function are calculated. If you have a very large data set or are interpolating many sets then consider deleting the <acronym>RAM</acronym> variable when [...]
-</p>
-<p>A simple example
-</p>
-<div class="example">
-<pre class="verbatim">x_in[$lon]={1.0,2.0,3.0,4.0};
-y_in[$lon]={1.1,1.2,1.5,1.8};
-
-// Ram variable is declared and defined here
-gsl_interp_cspline(&ram_sp,x_in,y_in);
-
-x_out[$lon_grd]={1.1,2.0,3.0,3.1,3.99};
-
-y_out=gsl_spline_eval(ram_sp,x_out);
-y2=gsl_spline_eval(ram_sp,1.3);
-y3=gsl_spline_eval(ram_sp,0.0);
-ram_delete(ram_sp);
-
-print(y_out); // 1.10472, 1.2, 1.4, 1.42658, 1.69680002
-print(y2); // 1.12454
-print(y3); // '_'
-</pre></div>
-
-<p>Note in the above example y3 is set to ’missing value’ because 0.0 isn’t within the input X range.
-</p>
-<p><strong><acronym>GSL</acronym> Interpolation Types</strong><br>
-All the interpolation functions have been implemented. These are:<br>
-gsl_interp_linear() <br> gsl_interp_polynomial() <br> gsl_interp_cspline()<br>
-gsl_interp_cspline_periodic()<br> gsl_interp_akima() <br> gsl_interp_akima_periodic() <br>
-</p>
-<br> <br>
-<p><strong> Evaluation of Interpolating Types </strong> <br>
-<strong>Implemented</strong> <br>
-gsl_spline_eval() <br>
-<strong>Unimplemented</strong> <br>
-gsl_spline_deriv()<br>
-gsl_spline_deriv2()<br>
-gsl_spline_integ()<br>
-</p>
-<a name="ncap_lsqf"></a> <!-- http://nco.sf.net/nco.html#ncap_lsqf --><hr>
-<a name="GSL-least_002dsquares-fitting"></a>
-<div class="header">
-<p>
-Next: <a href="#GSL-statistics" accesskey="n" rel="next">GSL statistics</a>, Previous: <a href="#GSL-interpolation" accesskey="p" rel="prev">GSL interpolation</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="GSL-least_002dsquares-fitting-1"></a>
-<h4 class="subsection">4.1.21 GSL least-squares fitting</h4>
-<p>Least Squares fitting is a method of calculating a straight line through a set of experimental data points in the XY plane. The data maybe weighted or unweighted. For more information please refer to the <acronym>GSL</acronym> manual.
-</p>
-<p>These <acronym>GSL</acronym> functions fall into three categories:<br>
-<strong>A)</strong> Fitting data to Y=c0+c1*X<br>
-<strong>B)</strong> Fitting data (through the origin) Y=c1*X<br>
-<strong>C)</strong> Multi-parameter fitting (not yet implemented)<br>
-</p>
-<p><strong>Section A</strong> <br> <br>
-<code>status=<strong>gsl_fit_linear</strong> (data_x,stride_x,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&sumsq) </code>
-</p>
-<p><strong>Input variables</strong>: data_x, stride_x, data_y, stride_y, n <br>
-From the above variables an X and Y vector both of length ’n’ are derived.
-If data_x or data_y is less than type double then it is converted to type <code>double</code>.
-It is up to you to do bounds checking on the input data.
-For example if stride_x=3 and n=8 then the size of data_x must be at least 24
-</p>
-<p><strong>Output variables</strong>: c0, c1, cov00, cov01, cov11,sumsq <br>
-The ’&’ prefix indicates that these are call-by-reference variables.
-If any of the output variables don’t exist prior to the call then they are created on the fly as scalar variables of type <code>double</code>. If they already exist then their existing value is overwritten. If the function call is successful then <code>status=0</code>.
-</p>
-<p><code>status= <strong>gsl_fit_wlinear</strong>(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&chisq) </code>
-</p>
-<p>Similar to the above call except it creates an additional weighting vector from the variables data_w, stride_w, n
-</p>
-
-<p><code> data_y_out=<strong>gsl_fit_linear_est</strong>(data_x,c0,c1,cov00,cov01,cov11) </code>
-</p>
-<p>This function calculates y values along the line Y=c0+c1*X <br> <br>
-</p>
-
-
-<p><strong>Section B</strong> <br> <br>
-<code>status=<strong>gsl_fit_mul</strong>(data_x,stride_x,data_y,stride_y,n,&c1,&cov11,&sumsq) </code>
-</p>
-<p><strong>Input variables</strong>: data_x, stride_x, data_y, stride_y, n <br>
-From the above variables an X and Y vector both of length ’n’ are derived.
-If data_x or data_y is less than type <code>double</code> then it is converted to type <code>double</code>. <br>
-</p>
-<p><strong>Output variables</strong>: c1,cov11,sumsq <br>
-</p>
-
-<p><code>status= <strong>gsl_fit_wmul</strong>(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&c1,&cov11,&sumsq) </code>
-</p>
-<p>Similar to the above call except it creates an additional weighting vector from the variables data_w, stride_w, n
-</p>
-
-<p><code> data_y_out=<strong>gsl_fit_mul_est</strong>(data_x,c0,c1,cov11) </code>
-</p>
-<p>This function calculates y values along the line Y=c1*X <br> <br>
-</p>
-<p>The below example shows <strong>gsl_fit_linear()</strong> in action
-</p>
-<div class="example">
-<pre class="verbatim">defdim("d1",10);
-xin[d1]={1,2,3,4,5,6,7,8,9,10.0};
-yin[d1]={3.1,6.2,9.1,12.2,15.1,18.2,21.3,24.0,27.0,30.0};
-gsl_fit_linear(xin,1,yin,1,$d1.size,&c0,&c1,&cov00,&cov01,&cov11,&sumsq);
-print(c0); // 0.2
-print(c1); // 2.98545454545
-
-
-defdim("e1",4);
-xout[e1]={1.0,3.0,4.0,11};
-yout[e1]=0.0;
-
-yout=gsl_fit_linear_est(xout, c0,c1, cov00,cov01, cov11, sumsq);
-
-print(yout); // 3.18545454545 ,9.15636363636, ,12.1418181818 ,33.04
-</pre></div>
-<br> <br>
-
-
-
-<a name="ncap_stat"></a> <!-- http://nco.sf.net/nco.html#ncap_stat -->
-<hr>
-<a name="GSL-statistics"></a>
-<div class="header">
-<p>
-Next: <a href="#GSL-random-number-generation" accesskey="n" rel="next">GSL random number generation</a>, Previous: <a href="#GSL-least_002dsquares-fitting" accesskey="p" rel="prev">GSL least-squares fitting</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="GSL-statistics-1"></a>
-<h4 class="subsection">4.1.22 GSL statistics</h4>
-
-<p>Wrappers for most of the <acronym>GSL</acronym> Statistical functions have been implemented. The <acronym>GSL</acronym> function names include a type specifier (except for type double functions). To obtain the equivalent <acronym>NCO</acronym> name simply remove the type specifier; then depending on the data type the appropriate <acronym>GSL</acronym> function is called. The weighed statistical functions e.g., <code> gsl_stats_wvariance()</code> are only defined in <acronym>GSL</acro [...]
-</p>
-<p><acronym>GSL</acronym> Functions
-</p><div class="example">
-<pre class="example">short gsl_stats_max (short data[], size_t stride, size_t n);
-double gsl_stats_int_mean (int data[], size_t stride, size_t n);
-double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stride, size_t n, double mean);
-double gsl_stats_wmean (double w[], size_t wstride, double data[], size_t stride, size_t n);
-double gsl_stats_quantile_from_sorted_data (double sorted_data[], size_t stride, size_t n, double f) ;
-</pre></div>
-
-
-<p>Equivalent ncap2 wrapper functions
-</p><div class="example">
-<pre class="example">short gsl_stats_max (var_data, data_stride, n);
-double gsl_stats_mean (var_data, data_stride, n);
-double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_mean);
-double gsl_stats_wmean (var_weight, weight_stride, var_data, data_stride, n, var_mean);
-double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_stride, n, var_f) ;
-</pre></div>
-
-<p><acronym>GSL</acronym> has no notion of missing values or dimensionality beyond one. If your data has missing values which you want ignored in the calculations then use the <code>ncap2</code> built in aggregate functions( <a href="#Methods-and-functions">Methods and functions</a> ). The <acronym>GSL</acronym> functions operate on a vector of values created from the var_data/stride/n arguments. The ncap wrappers check that there is no bounding error with regard to the size of the data [...]
-</p>
-<p>Some examples
-</p>
-<div class="example">
-<pre class="verbatim">a1[time]={1,2,3,4,5,6,7,8,9,10};
-
-a1_avg=gsl_stats_mean(a1,1,10);
-print(a1_avg); // 5.5
-
-a1_var=gsl_stats_variance(a1,4,3);
-print(a1_var); // 16.0
-
-// bounding error, vector attempts to access element a1(10)
-a1_sd=gsl_stats_sd(a1,5,3);
-</pre></div>
-
-<p>For functions with the signature
-<strong>func_nm(var_data,data_stride,n)</strong>,
-one may omit the second or third arguments.
-The default value for <var>stride</var> is <code>1</code>.
-The default value for <var>n</var> is <code>1+(data.size()-1)/stride</code>.
-</p>
-<div class="example">
-<pre class="example">// Following statements are equvalent
-n2=gsl_stats_max(a1,1,10)
-n2=gsl_stats_max(a1,1);
-n2=gsl_stats_max(a1);
-
-// Following statements are equvalent
-n3=gsl_stats_median_from_sorted_data(a1,2,5);
-n3=gsl_stats_median_from_sorted_data(a1,2);
-
-// Following statements are NOT equvalent
-n4=gsl_stats_kurtosis(a1,3,2);
-n4=gsl_stats_kurtosis(a1,3); //default n=4
-</pre></div>
-
-<p>The following example illustrates some of the weighted functions.
-The data are randomly generated.
-In this case the value of the weight for each datum is either 0.0 or 1.0
-</p><div class="example">
-<pre class="example">defdim("r1",2000);
-data[r1]=1.0;
-
-// Fill with random numbers [0.0,10.0)
-data=10.0*gsl_rng_uniform(data);
-
-// Create a weighting variable
-weight=(data>4.0);
-
-wmean=gsl_stats_wmean(weight,1,data,1,$r1.size);
-print(wmean);
-
-wsd=gsl_stats_wsd(weight,1,data,1,$r1.size);
-print(wsd);
-
-// number of values in data that are greater than 4
-weight_size=weight.total();
-print(weight_size);
-
-// print min/max of data
-dmin=data.gsl_stats_min();
-dmax=data.gsl_stats_max();
-print(dmin);print(dmax);
-</pre></div>
-
-<a name="ncap_rng"></a> <!-- http://nco.sf.net/nco.html#ncap_rng -->
-<hr>
-<a name="GSL-random-number-generation"></a>
-<div class="header">
-<p>
-Next: <a href="#Examples-ncap2" accesskey="n" rel="next">Examples ncap2</a>, Previous: <a href="#GSL-statistics" accesskey="p" rel="prev">GSL statistics</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="GSL-random-number-generation-1"></a>
-<h4 class="subsection">4.1.23 GSL random number generation</h4>
-<p>The <acronym>GSL</acronym> library has a large number of random number generators. In addition there are a large set of functions for turning uniform random numbers into discrete or continuous probabilty distributions. The random number generator algorithms vary in terms of quality numbers output, speed of execution and maximum number output. For more information see the <acronym>GSL</acronym> documentation. The algorithm and seed are set via environment variables, these are picked up [...]
-</p>
-<p><strong>Setup</strong> <br>
-The number algorithm is set by the environment variable <code>GSL_RNG_TYPE</code>. If this variable isn’t set then the default rng algorithm is gsl_rng_19937. The seed is set with the environment variable <code>GSL_RNG_SEED</code>. The following wrapper functions in ncap2 provide information about the chosen algorithm. <br>
-</p>
-<dl compact="compact">
-<dt><code>gsl_rng_min()</code></dt>
-<dd><p>the minimum value returned by the rng algorithm.
-</p></dd>
-<dt><code>gsl_rng_max()</code></dt>
-<dd><p>the maximum value returned by the rng algorithm.
-</p></dd>
-</dl>
-
-<p><strong>Uniformly Distributed Random Numbers</strong>
-</p><dl compact="compact">
-<dt><code>gsl_rng_get(var_in)</code></dt>
-<dd><p>This function returns var_in with integers from the chosen rng algorithm. The min and max values depend uoon the chosen rng algorthm.
-</p></dd>
-<dt><code>gsl_rng_uniform_int(var_in)</code></dt>
-<dd><p>This function returns var_in with random integers from 0 to n-1. The value n must be less than or equal to the maximum value of the chosen rng algorithm.
-</p></dd>
-<dt><code>gsl_rng_uniform(var_in)</code></dt>
-<dd><p>This function returns var_in with double-precision numbers in the range [0.0,1). The range includes 0.0 and excludes 1.0.
-</p></dd>
-<dt><code>gsl_rng_uniform_pos(var_in)</code></dt>
-<dd><p>This function returns var_in with double-precision numbers in the range (0.0,1), excluding both 0.0 and 1.0.
-</p></dd>
-</dl>
-
-<p>Below are examples of <code>gsl_rng_get()</code> and <code>gsl_rng_uniform_int()</code> in action.
-</p>
-<div class="example">
-<pre class="example">export GSL_RNG_TYPE=ranlux
-export GSL_RNG_SEED=10
-ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
-// 10 random numbers from the range 0 - 16777215
-// a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 11163902, 7730127, 15531355, 10387694 ;
-
-ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.nc foo.nc
-// 10 random numbers from the range 0 - 20
-a2 = 1, 1, 6, 9, 11, 13, 13, 15, 16, 19 ;
-
-</pre></div>
-
-<p>The following example produces an <code>ncap2</code> runtime error. This is because the chose rng algorithm has a maximum value greater than <code> NC_MAX_INT=2147483647 </code>; the wrapper functions to <code>gsl_rng_get()</code> and <code>gsl_rng_uniform_int()</code> return variable of type <code>NC_INT</code>. Please be aware of this when using random number distribution functions functions from the <acronym>GSL</acronym> library which return <code>unsigned int</code>. Examples of [...]
-</p>
-<div class="example">
-<pre class="example">export GSL_RNG_TYPE=mt19937
-ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
-</pre></div>
-
-<p>To find the maximum value of the chosen rng algorithm use the following code snippet.
-</p><div class="example">
-<pre class="example">ncap2 -v -O -s 'rng_max=gsl_rng_max();print(rng_max)' in.nc foo.nc
-</pre></div>
-
-<p><strong>Random Number Distributions</strong> <br>
-The <acronym>GSL</acronym> library has a rich set of random number disribution functions. The library also provides cumulative distribution functions and inverse cumulative distribution functions sometimes referred to a quantile functions. To see whats available on your build use the shell command <code>ncap2 -f|grep -e _ran -e _cdf</code>.
-</p>
-<p>The following examples all return variables of type <code>NC_INT</code> <br>
-</p><div class="example">
-<pre class="example">defdim("out",15);
-a1[$out]=0.5;
-a2=gsl_ran_binomial(a1,30).sort();
-//a2 = 10, 11, 12, 12, 13, 14, 14, 15, 15, 16, 16, 16, 16, 17, 22 ;
-a3=gsl_ran_geometric(a2).sort();
-//a2 = 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 3, 4, 5 ;
-a4=gsl_ran_pascal(a2,50);
-//a5 = 37, 40, 40, 42, 43, 45, 46, 49, 52, 58, 60, 62, 62, 65, 67 ;
-</pre></div>
-
-<p>The following all return variables of type <code>NC_DOUBLE</code>;
-</p><div class="example">
-<pre class="example">defdim("b1",1000);
-b1[$b1]=0.8;
-b2=gsl_ran_exponential(b1);
-b2_avg=b2.avg();
-print(b2_avg);
-// b2_avg = 0.756047976787
-
-b3=gsl_ran_gaussian(b1);
-b3_avg=b3.avg();
-b3_rms=b3.rms();
-print(b3_avg);
-// b3_avg = -0.00903446534258;
-print(b3_rms);
-// b3_rms = 0.81162979889;
-
-b4[$b1]=10.0;
-b5[$b1]=20.0;
-b6=gsl_ran_flat(b4,b5);
-b6_avg=b6.avg();
-print(b6_avg);
-// b6_avg=15.0588129413
-</pre></div>
-
-<a name="ncap_emp"></a> <!-- http://nco.sf.net/nco.html#ncap_emp --><hr>
-<a name="Examples-ncap2"></a>
-<div class="header">
-<p>
-Next: <a href="#Intrinsic-mathematical-methods" accesskey="n" rel="next">Intrinsic mathematical methods</a>, Previous: <a href="#GSL-random-number-generation" accesskey="p" rel="prev">GSL random number generation</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Examples-ncap2-1"></a>
-<h4 class="subsection">4.1.24 Examples ncap2</h4>
-
-<p>See the <samp>ncap.in</samp> and <samp>ncap2.in</samp> scripts released with <acronym>NCO</acronym>
-for more complete demonstrations of <code>ncap2</code> functionality
-(script available on-line at <a href="http://nco.sf.net/ncap2.in">http://nco.sf.net/ncap2.in</a>).
-</p>
-<p>Define new attribute <var>new</var> for existing variable <var>one</var>
-as twice the existing attribute <var>double_att</var> of variable
-<var>att_var</var>:
-</p><div class="example">
-<pre class="verbatim">ncap2 -s 'one at new=2*att_var at double_att' in.nc out.nc
-</pre></div>
-
-<p>Average variables of mixed types (result is of type <code>double</code>):
-</p><div class="example">
-<pre class="example">ncap2 -s 'average=(var_float+var_double+var_int)/3' in.nc out.nc
-</pre></div>
-
-<p>Multiple commands may be given to <code>ncap2</code> in three ways.
-First, the commands may be placed in a script which is executed, e.g.,
-<samp>tst.nco</samp>.
-Second, the commands may be individually specified with multiple
-‘<samp>-s</samp>’ arguments to the same <code>ncap2</code> invocation.
-Third, the commands may be chained into a single ‘<samp>-s</samp>’
-argument to <code>ncap2</code>.
-Assuming the file <samp>tst.nco</samp> contains the commands
-<code>a=3;b=4;c=sqrt(a^2+b^2);</code>, then the following <code>ncap2</code>
-invocations produce identical results:
-</p><div class="example">
-<pre class="example">ncap2 -v -S tst.nco in.nc out.nc
-ncap2 -v -s 'a=3' -s 'b=4' -s 'c=sqrt(a^2+b^2)' in.nc out.nc
-ncap2 -v -s 'a=3;b=4;c=sqrt(a^2+b^2)' in.nc out.nc
-</pre></div>
-<p>The second and third examples show that <code>ncap2</code> does not require
-that a trailing semi-colon ‘<samp>;</samp>’ be placed at the end of a ‘<samp>-s</samp>’
-argument, although a trailing semi-colon ‘<samp>;</samp>’ is always allowed.
-However, semi-colons are required to separate individual assignment
-statements chained together as a single ‘<samp>-s</samp>’ argument.
-</p>
-<a name="xmp_grw"></a> <!-- http://nco.sf.net/nco.html#xmp_grw --><a name="index-growing-dimensions"></a>
-<a name="index-dimensions_002c-growing"></a>
-<p><code>ncap2</code> may be used to “grow” dimensions, i.e., to increase
-dimension sizes without altering existing data.
-Say <samp>in.nc</samp> has <code>ORO(lat,lon)</code> and the user wishes a new
-file with <code>new_ORO(new_lat,new_lon)</code> that contains zeros in the
-undefined portions of the new grid.
-</p><div class="example">
-<pre class="example">defdim("new_lat",$lat.size+1); // Define new dimension sizes
-defdim("new_lon",$lon.size+1);
-new_ORO[$new_lat,$new_lon]=0.0f; // Initialize to zero
-new_ORO(0:$lat.size-1,0:$lon.size-1)=ORO; // Fill valid data
-</pre></div>
-<p>The commands to define new coordinate variables <code>new_lat</code>
-and <code>new_lon</code> in the output file follow a similar pattern.
-One would might store these commands in a script <samp>grow.nco</samp>
-and then execute the script with
-</p><div class="example">
-<pre class="example">ncap2 -v -S grow.nco in.nc out.nc
-</pre></div>
-
-<a name="flg"></a> <!-- http://nco.sf.net/nco.html#flg --><a name="index-flags"></a>
-<p>Imagine you wish to create a binary flag based on the value of
-an array.
-The flag should have value 1.0<!-- /@w --> where the array exceeds 1.0<!-- /@w -->,
-and value 0.0<!-- /@w --> elsewhere.
-This example creates the binary flag <code>ORO_flg</code> in <samp>out.nc</samp>
-from the continuous array named <code>ORO</code> in <samp>in.nc</samp>.
-</p><div class="example">
-<pre class="example">ncap2 -s 'ORO_flg=(ORO > 1.0)' in.nc out.nc
-</pre></div>
-<p>Suppose your task is to change all values of <code>ORO</code> which
-equal 2.0<!-- /@w --> to the new value 3.0<!-- /@w -->:
-</p><div class="example">
-<pre class="example">ncap2 -s 'ORO_msk=(ORO==2.0);ORO=ORO_msk*3.0+!ORO_msk*ORO' in.nc out.nc
-</pre></div>
-<a name="index-mask-1"></a>
-<p>This creates and uses <code>ORO_msk</code> to mask the subsequent arithmetic
-operation.
-Values of <code>ORO</code> are only changed where <code>ORO_msk</code> is true,
-i.e., where <code>ORO</code> equals 2.0<!-- /@w --> <br>
-Using the <code>where</code> statement the above code simplifies to :
-</p><div class="example">
-<pre class="example">ncap2 -s 'where(ORO==2.0) ORO=3.0;' in.nc foo.nc
-</pre></div>
-
-<a name="cvr"></a> <!-- http://nco.sf.net/nco.html#cvr --><p>This example uses <code>ncap2</code> to compute the covariance of two
-variables.
-Let the variables <var>u</var> and <var>v</var> be the horizontal
-wind components.
-<a name="index-covariance"></a>
-The <em>covariance</em> of <var>u</var> and <var>v</var> is defined
-as the time mean product of the deviations of <var>u</var> and
-<var>v</var> from their respective time means.
-Symbolically, the covariance
-<em>[<var>u'v'</var>] =
-[<var>uv</var>]-[<var>u</var>][<var>v</var>]</em>
-where <em>[<var>x</var>]</em> denotes the time-average of
-<em><var>x</var></em> and <em><var>x'</var></em>
-denotes the deviation from the time-mean.
-The covariance tells us how much of the correlation of two signals
-arises from the signal fluctuations versus the mean signals.
-<a name="index-eddy-covariance"></a>
-Sometimes this is called the <em>eddy covariance</em>.
-We will store the covariance in the variable <code>uprmvprm</code>.
-</p><div class="example">
-<pre class="example">ncwa -O -a time -v u,v in.nc foo.nc # Compute time mean of u,v
-ncrename -O -v u,uavg -v v,vavg foo.nc # Rename to avoid conflict
-ncks -A -v uavg,vavg foo.nc in.nc # Place time means with originals
-ncap2 -O -s 'uprmvprm=u*v-uavg*vavg' in.nc in.nc # Covariance
-ncra -O -v uprmvprm in.nc foo.nc # Time-mean covariance
-</pre></div>
-<p>The mathematically inclined will note that the same covariance would be
-obtained by replacing the step involving <code>ncap2</code> with
-</p><div class="example">
-<pre class="example">ncap2 -O -s 'uprmvprm=(u-uavg)*(v-vavg)' foo.nc foo.nc # Covariance
-</pre></div>
-
-<p>As of <acronym>NCO</acronym> version 3.1.8 (December, 2006), <code>ncap2</code>
-can compute averages, and thus covariances, by itself:
-</p><div class="example">
-<pre class="example">ncap2 -s 'uavg=u.avg($time);vavg=v.avg($time);uprmvprm=u*v-uavg*vavg' \
- -s 'uprmvrpmavg=uprmvprm.avg($time)' in.nc foo.nc
-</pre></div>
-<p>We have not seen a simpler method to script and execute powerful
-arithmetic than <code>ncap2</code>.
-</p>
-<a name="index-globbing-3"></a>
-<a name="index-shell-3"></a>
-<a name="index-quotes-1"></a>
-<a name="index-extended-regular-expressions-2"></a>
-<a name="index-regular-expressions-3"></a>
-<p><code>ncap2</code> utilizes many meta-characters
-(e.g., ‘<samp>$</samp>’, ‘<samp>?</samp>’, ‘<samp>;</samp>’, ‘<samp>()</samp>’, ‘<samp>[]</samp>’)
-that can confuse the command-line shell if not quoted properly.
-The issues are the same as those which arise in utilizing extended
-regular expressions to subset variables (see <a href="#Subsetting-Files">Subsetting Files</a>).
-The example above will fail with no quotes and with double quotes.
-This is because shell globbing tries to <em>interpolate</em> the value of
-<code>$time</code> from the shell environment unless it is quoted:
-</p><div class="example">
-<pre class="example">ncap2 -s 'uavg=u.avg($time)' in.nc foo.nc # Correct (recommended)
-ncap2 -s uavg=u.avg('$time') in.nc foo.nc # Correct (and dangerous)
-ncap2 -s uavg=u.avg($time) in.nc foo.nc # Fails ($time = '')
-ncap2 -s "uavg=u.avg($time)" in.nc foo.nc # Fails ($time = '')
-</pre></div>
-<p>Without the single quotes, the shell replaces <code>$time</code> with an
-empty string.
-The command <code>ncap2</code> receives from the shell is
-<code>uavg=u.avg()</code>.
-This causes <code>ncap2</code> to average over all dimensions rather than
-just the <var>time</var> dimension, and unintended consequence.
-</p>
-<p>We recommend using single quotes to protect <code>ncap2</code>
-command-line scripts from the shell, even when such protection is not
-strictly necessary.
-Expert users may violate this rule to exploit the ability to use shell
-variables in <code>ncap2</code> command-line scripts
-(see <a href="#CCSM-Example">CCSM Example</a>).
-In such cases it may be necessary to use the shell backslash character
-‘<samp>\</samp>’ to protect the <code>ncap2</code> meta-character.
-</p>
-
-<a name="index-appending-data"></a>
-<a name="index-time_002daveraging"></a>
-<a name="index-ncks-2"></a>
-<a name="index-ncwa-3"></a>
-<a name="index-ncra-2"></a>
-<a name="index-degenerate-dimension-2"></a>
-<a name="index-_002db"></a>
-<p>A dimension of size one is said to be <em>degenerate</em>.
-Whether a degenerate record dimension is desirable or not
-depends on the application.
-Often a degenerate <var>time</var> dimension is useful, e.g., for
-concatentating, but it may cause problems with arithmetic.
-Such is the case in the above example, where the first step employs
-<code>ncwa</code> rather than <code>ncra</code> for the time-averaging.
-Of course the numerical results are the same with both operators.
-The difference is that, unless ‘<samp>-b</samp>’ is specified, <code>ncwa</code>
-writes no <var>time</var> dimension to the output file, while <code>ncra</code>
-defaults to keeping <var>time</var> as a degenerate (size 1<!-- /@w -->) dimension.
-Appending <code>u</code> and <code>v</code> to the output file would cause
-<code>ncks</code> to try to expand the degenerate time axis of <code>uavg</code>
-and <code>vavg</code> to the size of the non-degenerate <var>time</var> dimension
-in the input file.
-Thus the append (<code>ncks -A</code>) command would be undefined (and
-should fail) in this case.
-<a name="index-_002dC-2"></a>
-Equally important is the ‘<samp>-C</samp>’ argument
-(see <a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>) to <code>ncwa</code> to prevent
-any scalar <var>time</var> variable from being written to the output file.
-Knowing when to use <code>ncwa -a time</code> rather than the default
-<code>ncra</code> for time-averaging takes, well, time.
-</p>
-<a name="mth"></a> <!-- http://nco.sf.net/nco.html#mth --><hr>
-<a name="Intrinsic-mathematical-methods"></a>
-<div class="header">
-<p>
-Next: <a href="#Operator-precedence-and-associativity" accesskey="n" rel="next">Operator precedence and associativity</a>, Previous: <a href="#Examples-ncap2" accesskey="p" rel="prev">Examples ncap2</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Intrinsic-mathematical-methods-1"></a>
-<h4 class="subsection">4.1.25 Intrinsic mathematical methods</h4>
-<p><code>ncap2</code> supports the standard mathematical functions supplied with
-most operating systems.
-<a name="index-addition"></a>
-<a name="index-subtraction"></a>
-<a name="index-multiplication"></a>
-<a name="index-division"></a>
-<a name="index-exponentiation"></a>
-<a name="index-power"></a>
-<a name="index-modulus"></a>
-<a name="index-_002b-_0028addition_0029"></a>
-<a name="index-_002d-_0028subtraction_0029"></a>
-<a name="index-_002a-_0028multiplication_0029"></a>
-<a name="index-_002f-_0028division_0029"></a>
-<a name="index-_005e-_0028power_0029"></a>
-<a name="index-_0025-_0028modulus_0029"></a>
-Standard calculator notation is used for addition <kbd>+</kbd>, subtraction
-<kbd>-</kbd>, multiplication <kbd>*</kbd>, division <kbd>/</kbd>, exponentiation
-<kbd>^</kbd>, and modulus <kbd>%</kbd>.
-The available elementary mathematical functions are:
-<a name="index-abs"></a>
-<a name="index-acosh"></a>
-<a name="index-acos"></a>
-<a name="index-asinh"></a>
-<a name="index-asin"></a>
-<a name="index-atanh"></a>
-<a name="index-atan"></a>
-<a name="index-ceil"></a>
-<a name="index-cosh"></a>
-<a name="index-cos"></a>
-<a name="index-erfc"></a>
-<a name="index-erf"></a>
-<a name="index-exp"></a>
-<a name="index-floor"></a>
-<a name="index-gamma-1"></a>
-<a name="index-ln"></a>
-<a name="index-log10"></a>
-<a name="index-log"></a>
-<a name="index-nearbyint"></a>
-<a name="index-pow"></a>
-<a name="index-rint"></a>
-<a name="index-round"></a>
-<a name="index-sinh"></a>
-<a name="index-sin"></a>
-<a name="index-sqrt-1"></a>
-<a name="index-tanh"></a>
-<a name="index-tan"></a>
-<a name="index-trunc"></a>
-<a name="index-mathematical-functions"></a>
-<a name="index-nearest-integer-function-_0028inexact_0029"></a>
-<a name="index-nearest-integer-function-_0028exact_0029"></a>
-<a name="index-rounding-functions"></a>
-<a name="index-truncation-function"></a>
-<a name="index-absolute-value"></a>
-<a name="index-arccosine-function"></a>
-<a name="index-arcsine-function"></a>
-<a name="index-arctangent-function"></a>
-<a name="index-ceiling-function"></a>
-<a name="index-complementary-error-function"></a>
-<a name="index-cosine-function"></a>
-<a name="index-error-function"></a>
-<a name="index-exponentiation-function"></a>
-<a name="index-floor-function"></a>
-<a name="index-gamma-function-1"></a>
-<a name="index-hyperbolic-arccosine-function"></a>
-<a name="index-hyperbolic-arcsine-function"></a>
-<a name="index-hyperbolic-arctangent-function"></a>
-<a name="index-hyperbolic-cosine-function"></a>
-<a name="index-hyperbolic-sine-function"></a>
-<a name="index-hyperbolic-tangent"></a>
-<a name="index-logarithm_002c-base-10"></a>
-<a name="index-logarithm_002c-natural"></a>
-<a name="index-power-function"></a>
-<a name="index-sine-function"></a>
-<a name="index-square-root-function"></a>
-</p><dl compact="compact">
-<dt><code>abs(x)</code></dt>
-<dd><p><em>Absolute value</em>
-Absolute value of <var>x</var>.
-Example:
-<em>abs(-1) = 1</em>
-</p></dd>
-<dt><code>acos(x)</code></dt>
-<dd><p><em>Arc-cosine</em>
-Arc-cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>acos(1.0) = 0.0</em>
-</p></dd>
-<dt><code>acosh(x)</code></dt>
-<dd><p><em>Hyperbolic arc-cosine</em>
-Hyperbolic arc-cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>acosh(1.0) = 0.0</em>
-</p></dd>
-<dt><code>asin(x)</code></dt>
-<dd><p><em>Arc-sine</em>
-Arc-sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>asin(1.0) = 1.57079632679489661922</em>
-</p></dd>
-<dt><code>asinh(x)</code></dt>
-<dd><p><em>Hyperbolic arc-sine</em>
-Hyperbolic arc-sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>asinh(1.0) = 0.88137358702</em>
-</p></dd>
-<dt><code>atan(x)</code></dt>
-<dd><p><em>Arc-tangent</em>
-Arc-tangent of <var>x</var> where <var>x</var> is specified in radians between
-<em>-pi/2</em> and <em>pi/2</em>.
-Example:
-<em>atan(1.0) = 0.78539816339744830961</em>
-</p>
-</dd>
-<dt><code>atan2(y,x)</code></dt>
-<dd><p><em>Arc-tangent2</em>
-Arc-tangent of <var>y/x</var>
-<em>:Example atan2(1,3) = 0.321689857</em>
-</p>
-</dd>
-<dt><code>atanh(x)</code></dt>
-<dd><p><em>Hyperbolic arc-tangent</em>
-Hyperbolic arc-tangent of <var>x</var> where <var>x</var> is specified in radians between
-<em>-pi/2</em> and <em>pi/2</em>.
-Example:
-<em>atanh(3.14159265358979323844) = 1.0</em>
-</p></dd>
-<dt><code>ceil(x)</code></dt>
-<dd><p><em>Ceil</em>
-Ceiling of <var>x</var>. Smallest integral value not less than argument.
-Example:
-<em>ceil(0.1) = 1.0</em>
-</p></dd>
-<dt><code>cos(x)</code></dt>
-<dd><p><em>Cosine</em>
-Cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>cos(0.0) = 1.0</em>
-</p></dd>
-<dt><code>cosh(x)</code></dt>
-<dd><p><em>Hyperbolic cosine</em>
-Hyperbolic cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>cosh(0.0) = 1.0</em>
-</p></dd>
-<dt><code>erf(x)</code></dt>
-<dd><p><em>Error function</em>
-Error function of <var>x</var> where <var>x</var> is specified between
-<em>-1</em> and <em>1</em>.
-Example:
-<em>erf(1.0) = 0.842701</em>
-</p></dd>
-<dt><code>erfc(x)</code></dt>
-<dd><p><em>Complementary error function</em>
-Complementary error function of <var>x</var> where <var>x</var> is specified between
-<em>-1</em> and <em>1</em>.
-Example:
-<em>erfc(1.0) = 0.15729920705</em>
-</p></dd>
-<dt><code>exp(x)</code></dt>
-<dd><p><em>Exponential</em>
-Exponential of <var>x</var>,
-<em>e^x</em>.
-Example:
-<em>exp(1.0) = 2.71828182845904523536</em>
-</p></dd>
-<dt><code>floor(x)</code></dt>
-<dd><p><em>Floor</em>
-Floor of <var>x</var>. Largest integral value not greater than argument.
-Example:
-<em>floor(1.9) = 1</em>
-</p></dd>
-<dt><code>gamma(x)</code></dt>
-<dd><p><em>Gamma function</em>
-Gamma function of <var>x</var>,
-<em>Gamma(x)</em>.
-The well-known and loved continuous factorial function.
-Example:
-<em>gamma(0.5) = sqrt(pi)</em>
-</p></dd>
-<dt><code>gamma_inc_P(x)</code></dt>
-<dd><p><em>Incomplete Gamma function</em>
-Incomplete Gamma function of parameter <var>a</var> and variable <var>x</var>,
-<em>gamma_inc_P(a,x)</em>.
-One of the four incomplete gamma functions.
-Example:
-<em>gamma_inc_P(1,1) = 1-1/e</em>
-</p></dd>
-<dt><code>ln(x)</code></dt>
-<dd><p><em>Natural Logarithm</em>
-Natural logarithm of <var>x</var>,
-<em>ln(x)</em>.
-Example:
-<em>ln(2.71828182845904523536) = 1.0</em>
-</p></dd>
-<dt><code>log(x)</code></dt>
-<dd><p><em>Natural Logarithm</em>
-Exact synonym for <code>ln(x)</code>.
-</p></dd>
-<dt><code>log10(x)</code></dt>
-<dd><p><em>Base 10 Logarithm</em>
-Base 10<!-- /@w --> logarithm of <var>x</var>,
-<em>log10(x)</em>.
-Example:
-<em>log(10.0) = 1.0</em>
-</p></dd>
-<dt><code>nearbyint(x)</code></dt>
-<dd><p><em>Round inexactly</em>
-Nearest integer to <var>x</var> is returned in floating point format.
-<a name="index-inexact-conversion"></a>
-No exceptions are raised for <em>inexact conversions</em>.
-Example:
-<em>nearbyint(0.1) = 0.0</em>
-</p></dd>
-<dt><code>pow(x,y)</code></dt>
-<dd><p><em>Power</em>
-<a name="index-promotion-2"></a>
-<a name="index-automatic-type-conversion-1"></a>
-Value of <var>x</var> is raised to the power of <var>y</var>.
-Exceptions are raised for <em>domain errors</em>.
-Due to type-limitations in the C language<!-- /@w --> <code>pow</code> function,
-integer arguments are promoted (see <a href="#Type-Conversion">Type Conversion</a>) to type
-<code>NC_FLOAT</code> before evaluation.
-Example:
-<em>pow(2,3) = 8</em>
-</p></dd>
-<dt><code>rint(x)</code></dt>
-<dd><p><em>Round exactly</em>
-Nearest integer to <var>x</var> is returned in floating point format.
-Exceptions are raised for <em>inexact conversions</em>.
-Example:
-<em>rint(0.1) = 0</em>
-</p></dd>
-<dt><code>round(x)</code></dt>
-<dd><p><em>Round</em>
-Nearest integer to <var>x</var> is returned in floating point format.
-Round halfway cases away from zero, regardless of current <acronym>IEEE</acronym>
-rounding direction.
-Example:
-<em>round(0.5) = 1.0</em>
-</p></dd>
-<dt><code>sin(x)</code></dt>
-<dd><p><em>Sine</em>
-Sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>sin(1.57079632679489661922) = 1.0</em>
-</p></dd>
-<dt><code>sinh(x)</code></dt>
-<dd><p><em>Hyperbolic sine</em>
-Hyperbolic sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>sinh(1.0) = 1.1752</em>
-</p></dd>
-<dt><code>sqrt(x)</code></dt>
-<dd><p><em>Square Root</em>
-Square Root of <var>x</var>,
-<em>sqrt(x)</em>.
-Example:
-<em>sqrt(4.0) = 2.0</em>
-</p></dd>
-<dt><code>tan(x)</code></dt>
-<dd><p><em>Tangent</em>
-Tangent of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>tan(0.78539816339744830961) = 1.0</em>
-</p></dd>
-<dt><code>tanh(x)</code></dt>
-<dd><p><em>Hyperbolic tangent</em>
-Hyperbolic tangent of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<em>tanh(1.0) = 0.761594155956</em>
-</p></dd>
-<dt><code>trunc(x)</code></dt>
-<dd><p><em>Truncate</em>
-Nearest integer to <var>x</var> is returned in floating point format.
-Round halfway cases toward zero, regardless of current <acronym>IEEE</acronym>
-rounding direction.
-Example:
-<em>trunc(0.5) = 0.0</em>
-</p></dd>
-</dl>
-<p>The complete list of mathematical functions supported is
-platform-specific.
-Functions mandated by ANSI C<!-- /@w --> are <em>guaranteed</em> to be present
-and are indicated with an asterisk
-<a name="index-ANSI-C"></a>
-<a name="index-float"></a>
-<a name="index-precision"></a>
-<a name="index-quadruple_002dprecision"></a>
-<a name="index-single_002dprecision"></a>
-<a name="index-double_002dprecision"></a>
-<a name="index-long-double"></a>
-<a name="index-NC_005fDOUBLE"></a>
-<a name="DOCF55" href="#FOOT55"><sup>55</sup></a>.
-and are indicated with an asterisk.
-<a name="index-_002df"></a>
-<a name="index-_002d_002dprn_005ffnc_005ftbl"></a>
-<a name="index-_002d_002dfnc_005ftbl"></a>
-Use the ‘<samp>-f</samp>’ (or ‘<samp>fnc_tbl</samp>’ or ‘<samp>prn_fnc_tbl</samp>’) switch
-to print a complete list of functions supported on your platform.
-<a name="index-Linux"></a>
-<a name="DOCF56" href="#FOOT56"><sup>56</sup></a>
-</p>
-<a name="xmp_ncap"></a> <!-- http://nco.sf.net/nco.html#xmp_ncap -->
-<a name="xmp_ncap2"></a> <!-- http://nco.sf.net/nco.html#xmp_ncap2 -->
-
-<a name="ncap_opts"></a> <!-- http://nco.sf.net/nco.html#ncap_opts --><hr>
-<a name="Operator-precedence-and-associativity"></a>
-<div class="header">
-<p>
-Next: <a href="#ID-Quoting" accesskey="n" rel="next">ID Quoting</a>, Previous: <a href="#Intrinsic-mathematical-methods" accesskey="p" rel="prev">Intrinsic mathematical methods</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Operator-precedence-and-associativity-1"></a>
-<h4 class="subsection">4.1.26 Operator precedence and associativity</h4>
-<p>This page lists the <code>ncap2</code> operators in order of precedence (highest to lowest). Their associativity indicates in what order operators of equal precedence in an expression are applied.
-</p>
-<table>
-<thead><tr><th width="18%">Operator</th><th width="62%">Description</th><th width="20%">Associativity</th></tr></thead>
-<tr><td width="18%"><code>++ --</code></td><td width="62%">Postfix Increment/Decrement</td><td width="20%">Right to Left</td></tr>
-<tr><td width="18%"><code>()</code></td><td width="62%">Parentheses (function call)</td></tr>
-<tr><td width="18%"><code>.</code></td><td width="62%">Method call</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>++ --</code></td><td width="62%">Prefix Increment/Decrement</td><td width="20%">Right to Left</td></tr>
-<tr><td width="18%"><code>+ -</code></td><td width="62%">Unary Plus/Minus</td></tr>
-<tr><td width="18%"><code>!</code></td><td width="62%">Logical Not</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>^</code></td><td width="62%">Power of Operator</td><td width="20%">Right to Left</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>* / %</code></td><td width="62%">Multiply/Divide/Modulus</td><td width="20%">Left To Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>+ -</code></td><td width="62%">Addition/Subtraction</td><td width="20%">Left To Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>>> <<</code></td><td width="62%">Fortran style array clipping</td><td width="20%">Left to Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>< <=</code></td><td width="62%">Less than/Less than or equal to</td><td width="20%">Left to Right</td></tr>
-<tr><td width="18%"><code>> >=</code></td><td width="62%">Greater than/Greater than or equal to</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>== !=</code></td><td width="62%">Equal to/Not equal to</td><td width="20%">Left to Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>&&</code></td><td width="62%">Logical AND</td><td width="20%">Left to Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>||</code></td><td width="62%">Logical OR</td><td width="20%">Left to Right</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>?:</code></td><td width="62%">Ternary Operator</td><td width="20%">Right to Left</td></tr>
-<tr><td width="18%"></td></tr>
-<tr><td width="18%"><code>=</code></td><td width="62%">Assignment</td><td width="20%">Right to Left</td></tr>
-<tr><td width="18%"><code>+= -=</code></td><td width="62%">Addition/subtraction assignment</td></tr>
-<tr><td width="18%"><code>*= /=</code></td><td width="62%">Multiplication/division assignment</td></tr>
-</table>
-
-<a name="ncap_nmc"></a> <!-- http://nco.sf.net/nco.html#ncap_nmc --><hr>
-<a name="ID-Quoting"></a>
-<div class="header">
-<p>
-Previous: <a href="#Operator-precedence-and-associativity" accesskey="p" rel="prev">Operator precedence and associativity</a>, Up: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="u" rel="up">ncap2 netCDF Arithmetic Processor</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ID-Quoting-1"></a>
-<h4 class="subsection">4.1.27 ID Quoting</h4>
-<a name="index-ID-Quoting"></a>
-<p>In this section when I refer to a name I mean a variable name, attribute name or a dimension name
-The allowed characters in a valid netCDF name vary from release to release. (See end section). If you want to use metacharacters in a name or use a method name as a variable name then the name has to be quoted wherever it occurs.
-</p>
-<p>The default <acronym>NCO</acronym> name is specified by the regular expressions:
-</p>
-<div class="example">
-<pre class="example">DGT: ('0'..'9');
-LPH: ( 'a'..'z' | 'A'..'Z' | '_' );
-name: (LPH)(LPH|DGT)+
-</pre></div>
-
-<p>The first character of a valid name must be alphabetic or the underscore. Any subsequent characters must be alphanumeric or underscore. ( e.g., a1,_23, hell_is_666 )
-</p>
-<p>The valid characters in a quoted name are specified by the regular expressions:
-</p><div class="example">
-<pre class="example">LPHDGT: ( 'a'..'z' | 'A'..'Z' | '_' | '0'..'9');
-name: (LPHDGT|'-'|'+'|'.'|'('|')'|':' )+ ;
-</pre></div>
-
-<p>Quote a variable:<br>
-’avg’ , ’10_+10’,’set_miss’ ’+-90field’ , ’–test’=10.0d<br> <br>
-Quote a attribute: <br>
-’three at 10’, ’set_mss at +10’, ’666 at hell’, ’t1 at +units’="kelvin" <br> <br>
-Quote a dimension: <br>
-’$10’, ’$t1–’, ’$–odd’, c1[’$10’,’$t1–’]=23.0d <br>
-</p>
-<br>
-<p>The following comments are from the netCDF library definitions and
-detail the naming conventions for each release.
-netcdf-3.5.1 <br>
-netcdf-3.6.0-p1 <br>
-netcdf-3.6.1 <br>
-netcdf-3.6.2 <br>
-</p><div class="example">
-<pre class="verbatim">/*
- * ( [a-zA-Z]|[0-9]|'_'|'-'|'+'|'.'|'|':'|'@'|'('|')' )+
- * Verify that name string is valid CDL syntax, i.e., all characters are
- * alphanumeric, '-', '_', '+', or '.'.
- * Also permit ':', '@', '(', or ')' in names for chemists currently making
- * use of these characters, but don't document until ncgen and ncdump can
- * also handle these characters in names.
- */
-</pre></div>
-
-<p>netcdf-3.6.3<br>
-netcdf-4.0 Final 2008/08/28<br>
-</p><div class="example">
-<pre class="verbatim">/*
- * Verify that a name string is valid syntax. The allowed name
- * syntax (in RE form) is:
- *
- * ([a-zA-Z_]|{UTF8})([^\x00-\x1F\x7F/]|{UTF8})*
- *
- * where UTF8 represents a multibyte UTF-8 encoding. Also, no
- * trailing spaces are permitted in names. This definition
- * must be consistent with the one in ncgen.l. We do not allow '/'
- * because HDF5 does not permit slashes in names as slash is used as a
- * group separator. If UTF-8 is supported, then a multi-byte UTF-8
- * character can occur anywhere within an identifier. We later
- * normalize UTF-8 strings to NFC to facilitate matching and queries.
- */
-</pre></div>
-
-<a name="ncatted"></a> <!-- http://nco.sf.net/nco.html#ncatted --><hr>
-<a name="ncatted-netCDF-Attribute-Editor"></a>
-<div class="header">
-<p>
-Next: <a href="#ncbo-netCDF-Binary-Operator" accesskey="n" rel="next">ncbo netCDF Binary Operator</a>, Previous: <a href="#ncap2-netCDF-Arithmetic-Processor" accesskey="p" rel="prev">ncap2 netCDF Arithmetic Processor</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncatted-netCDF-Attribute-Editor-1"></a>
-<h3 class="section">4.2 <code>ncatted</code> netCDF Attribute Editor</h3>
-<a name="index-attributes"></a>
-<a name="index-attribute-names"></a>
-<a name="index-editing-attributes"></a>
-<a name="index-ncatted-4"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncatted [-a <var>att_dsc</var>] [-a …] [-D <var>dbg</var>] [-h] [--hdr_pad <var>nbr</var>]
-[-l <var>path</var>] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<a name="index-ncattget"></a>
-<p><code>ncatted</code> edits attributes in a netCDF file.
-If you are editing attributes then you are spending too much time in the
-world of metadata, and <code>ncatted</code> was written to get you back out as
-quickly and painlessly as possible.
-<code>ncatted</code> can <em>append</em>, <em>create</em>, <em>delete</em>,
-<em>modify</em>, and <em>overwrite</em> attributes (all explained below).
-<code>ncatted</code> allows each editing operation to be applied
-to every variable in a file.
-This saves time when changing attribute conventions throughout a file.
-<code>ncatted</code> is for <em>writing</em> attributes.
-To <em>read</em> attribute values in plain text, use <code>ncks -m -M</code>,
-or define something like <code>ncattget</code> as a shell command
-(see <a href="#Filters-for-ncks">Filters for <code>ncks</code></a>).
-</p>
-<a name="index-history-4"></a>
-<a name="index-_002dh-1"></a>
-<p>Because repeated use of <code>ncatted</code> can considerably increase the size
-of the <code>history</code> global attribute (see <a href="#History-Attribute">History Attribute</a>), the
-‘<samp>-h</samp>’ switch is provided to override automatically appending the
-command to the <code>history</code> global attribute in the <var>output-file</var>.
-</p>
-<a name="index-performance-6"></a>
-<a name="index-operator-speed-5"></a>
-<a name="index-speed-6"></a>
-<a name="index-execution-time-5"></a>
-<p>According to the <cite>netCDF User Guide</cite>, altering metadata in
-netCDF files does not incur the penalty of recopying the entire file
-when the new metadata occupies less space than the old metadata.
-Thus <code>ncatted</code> may run much faster (at least on netCDF3 files)
-if judicious use of header padding (see <a href="#Metadata-Optimization">Metadata Optimization</a>) was
-made when producing the <var>input-file</var>.
-Similarly, using the ‘<samp>--hdr_pad</samp>’ option with <code>ncatted</code>
-helps ensure that future metadata changes to <var>output-file</var> occur
-as swiftly as possible.
-</p>
-<a name="index-missing-values-1"></a>
-<a name="index-data_002c-missing-1"></a>
-<a name="index-_005fFillValue-2"></a>
-<p>When <code>ncatted</code> is used to change the <code>_FillValue</code> attribute,
-it changes the associated missing data self-consistently.
-If the internal floating point representation of a missing value,
-e.g., 1.0e36, differs between two machines then netCDF files produced
-on those machines will have incompatible missing values.
-This allows <code>ncatted</code> to change the missing values in files from
-different machines to a single value so that the files may then be
-concatenated, e.g., by <code>ncrcat</code>, without losing information.
-See <a href="#Missing-Values">Missing Values</a>, for more information.
-</p>
-<p>To master <code>ncatted</code> one must understand the meaning of the
-structure that describes the attribute modification, <var>att_dsc</var>
-specified by the required option ‘<samp>-a</samp>’ or ‘<samp>--attribute</samp>’.
-This option is repeatable and may be used multiple time in a single
-<code>ncatted</code> invocation to increase the efficiency of altering
-multiple attributes.
-Each <var>att_dsc</var> contains five elements.
-This makes using <code>ncatted</code> somewhat complicated, though
-powerful.
-The <var>att_dsc</var> fields are in the following order:<br>
-</p>
-<p><var>att_dsc</var> = <var>att_nm</var>, <var>var_nm</var>, <var>mode</var>, <var>att_type</var>,
-<var>att_val</var><br>
-</p>
-<dl compact="compact">
-<dt><var>att_nm</var></dt>
-<dd><p>Attribute name.
-Example: <code>units</code>
-</p></dd>
-<dt><var>var_nm</var></dt>
-<dd><p>Variable name.
-Example: <code>pressure</code>, <code>'^H2O'</code>.
-<a name="index-extended-regular-expressions-3"></a>
-<a name="index-regular-expressions-4"></a>
-<a name="index-pattern-matching-2"></a>
-<a name="index-wildcards-2"></a>
-Regular expressions (see <a href="#Subsetting-Files">Subsetting Files</a>) are accepted and will
-select any matching variable (<em>not</em> attribute) names.
-The names <code>global</code> and <code>group</code> have special meaning.
-</p></dd>
-<dt><var>mode</var></dt>
-<dd><p>Edit mode abbreviation.
-Example: <code>a</code>.
-See below for complete listing of valid values of <var>mode</var>.
-</p></dd>
-<dt><var>att_type</var></dt>
-<dd><p>Attribute type abbreviation.
-Example: <code>c</code>.
-See below for complete listing of valid values of <var>att_type</var>.
-</p></dd>
-<dt><var>att_val</var></dt>
-<dd><p>Attribute value.
-Example: <code>pascal</code>.
-</p></dd>
-</dl>
-<p>There should be no empty space between these five consecutive
-arguments.
-The description of these arguments follows in their order of
-appearance.
-</p>
-<p>The value of <var>att_nm</var> is the name of the attribute to edit.
-This meaning of this should be clear to all <code>ncatted</code> users.
-Recall, as mentioned above, that <var>var_nm</var> (but not <var>att_nm</var>) may
-be specified as a regular expression.
-If <var>att_nm</var> is omitted (i.e., left blank) and <em>Delete</em> mode is
-selected, then all attributes associated with the specified variable
-will be deleted.
-</p>
-<a name="index-global-attributes-4"></a>
-<a name="index-attributes_002c-global-4"></a>
-<p>The value of <var>var_nm</var> is the name of the variable containing the
-attribute (named <var>att_nm</var>) that you want to edit.
-There are three very important and useful exceptions to this rule.
-The value of <var>var_nm</var> can also be used to direct <code>ncatted</code>
-to edit global attributes, or to repeat the editing operation for every
-group or variable in a file.
-A value<!-- /@w --> of <var>var_nm</var> of <code>global</code> indicates that <var>att_nm</var>
-refers to a global (i.e., root-level) attribute, rather than to a
-particular variable’s attribute.
-This is the method <code>ncatted</code> supports for editing global
-attributes.
-A value<!-- /@w --> of <var>var_nm</var> of <code>group</code> indicates that <var>att_nm</var>
-refers to all groups, rather than to a particular variable’s or group’s
-attribute.
-The operation will proceed to edit group metadata for every group.
-Finally, if <var>var_nm</var> is left blank, then <code>ncatted</code>
-attempts to perform the editing operation on every variable in the file.
-This option may be convenient to use if you decide to change the
-conventions you use for describing the data.
-</p>
-<a name="mode"></a> <!-- http://nco.sf.net/nco.html#mode -->
-<a name="att_mode"></a> <!-- http://nco.sf.net/nco.html#att_mode --><p>The value of <var>mode</var> is a single character abbreviation (<code>a</code>,
-<code>c</code>, <code>d</code>, <code>m</code>, or <code>o</code>) standing for one of
-five editing modes:<br>
-<a name="index-attributes_002c-appending"></a>
-<a name="index-attributes_002c-creating"></a>
-<a name="index-attributes_002c-deleting"></a>
-<a name="index-attributes_002c-modifying"></a>
-<a name="index-attributes_002c-editing"></a>
-<a name="index-attributes_002c-overwriting"></a>
-</p><dl compact="compact">
-<dt><code>a</code></dt>
-<dd><p><em>Append</em>.
-Append value <var>att_val</var> to current <var>var_nm</var> attribute
-<var>att_nm</var> value <var>att_val</var>, if any.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-</p></dd>
-<dt><code>c</code></dt>
-<dd><p><em>Create</em>.
-Create variable <var>var_nm</var> attribute <var>att_nm</var> with <var>att_val</var>
-if <var>att_nm</var> does not yet exist.
-If <var>var_nm</var> already has an attribute <var>att_nm</var>, there is no
-effect, so the existing attribute is preserved without change.
-</p></dd>
-<dt><code>d</code></dt>
-<dd><p><em>Delete</em>.
-Delete current <var>var_nm</var> attribute <var>att_nm</var>.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-If <var>att_nm</var> is omitted (left blank), then all attributes associated
-with the specified variable are automatically deleted.
-When <em>Delete</em> mode is selected, the <var>att_type</var> and <var>att_val</var>
-arguments are superfluous and may be left blank.
-</p></dd>
-<dt><code>m</code></dt>
-<dd><p><em>Modify</em>.
-Change value of current <var>var_nm</var> attribute <var>att_nm</var> to value
-<var>att_val</var>.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-</p></dd>
-<dt><code>o</code></dt>
-<dd><p><em>Overwrite</em>.
-Write attribute <var>att_nm</var> with value <var>att_val</var> to variable
-<var>var_nm</var>, overwriting existing attribute <var>att_nm</var>, if any.
-This is the default mode.
-</p></dd>
-</dl>
-
-<a name="att_typ"></a> <!-- http://nco.sf.net/nco.html#att_typ --><p>The value of <var>att_type</var> is a single character abbreviation
-(<code>f</code>, <code>d</code>, <code>l</code>, <code>i</code>, <code>s</code>, <code>c</code>,
-<code>b</code>, <code>u</code>) or a short string standing for one of the twelve
-primitive netCDF data types:<br>
-</p><dl compact="compact">
-<dt><code>f</code></dt>
-<dd><p><em>Float</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_FLOAT</code>.
-</p></dd>
-<dt><code>d</code></dt>
-<dd><p><em>Double</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_DOUBLE</code>.
-</p></dd>
-<dt><code>i, l</code></dt>
-<dd><p><em>Integer</em> or <em>Long</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_INT</code>.
-</p></dd>
-<dt><code>s</code></dt>
-<dd><p><em>Short</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_SHORT</code>.
-</p></dd>
-<dt><code>c</code></dt>
-<dd><p><em>Char</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_CHAR</code>.
-</p></dd>
-<dt><code>b</code></dt>
-<dd><p><em>Byte</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_BYTE</code>.
-</p></dd>
-<dt><code>ub</code></dt>
-<dd><p><em>Unsigned Byte</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UBYTE</code>.
-</p></dd>
-<dt><code>us</code></dt>
-<dd><p><em>Unsigned Short</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_USHORT</code>.
-</p></dd>
-<dt><code>u, ui, ul</code></dt>
-<dd><p><em>Unsigned Int</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UINT</code>.
-</p></dd>
-<dt><code>ll, int64</code></dt>
-<dd><p><em>Int64</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_INT64</code>.
-</p></dd>
-<dt><code>ull, uint64</code></dt>
-<dd><p><em>Uint64</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UINT64</code>.
-</p></dd>
-<dt><code>sng, string</code></dt>
-<dd><p><em>String</em>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_STRING</code>.
-Note that <code>ncatted</code> handles type <code>NC_STRING</code> attributes
-correctly beginning with version 4.3.3 released in July, 2013.
-Earlier versions fail when asked to handle <code>NC_STRING</code> attributes.
-</p></dd>
-</dl>
-<p>In <em>Delete</em> mode the specification of <var>att_type</var> is optional
-(and is ignored if supplied).
-</p>
-<p>The value of <var>att_val</var> is what you want to change attribute
-<var>att_nm</var> to contain.
-The specification of <var>att_val</var> is optional in <em>Delete</em> (and is
-ignored) mode.
-Attribute values for all types besides <code>NC_CHAR</code> must have an
-attribute length of at least one.
-Thus <var>att_val</var> may be a single value or one-dimensional array of
-elements of type <code>att_type</code>.
-If the <var>att_val</var> is not set or is set to empty space,
-and the <var>att_type</var> is <code>NC_CHAR</code>, e.g., <code>-a units,T,o,c,""</code>
-or <code>-a units,T,o,c,</code>, then the corresponding attribute is set to
-have zero length.
-When specifying an array of values, it is safest to enclose
-<var>att_val</var> in single or double quotes, e.g.,
-<code>-a levels,T,o,s,"1,2,3,4"</code> or
-<code>-a levels,T,o,s,'1,2,3,4'</code>.
-The quotes are strictly unnecessary around <var>att_val</var> except
-when <var>att_val</var> contains characters which would confuse the calling
-shell, such as spaces, commas, and wildcard characters.
-</p>
-<a name="index-Perl-2"></a>
-<a name="index-ASCII"></a>
-<p><acronym>NCO</acronym> processing of <code>NC_CHAR</code> attributes is a bit like Perl in
-that it attempts to do what you want by default (but this sometimes
-causes unexpected results if you want unusual data storage).
-<a name="index-printf_0028_0029"></a>
-<a name="index-_005cn-_0028ASCII-LF_002c-linefeed_0029"></a>
-<a name="index-characters_002c-special"></a>
-<a name="index-_005ct-_0028ASCII-HT_002c-horizontal-tab_0029"></a>
-If the <var>att_type</var> is <code>NC_CHAR</code> then the argument is interpreted as a
-string and it may contain C-language escape sequences, e.g., <code>\n</code>,
-which <acronym>NCO</acronym> will interpret before writing anything to disk.
-<acronym>NCO</acronym> translates valid escape sequences and stores the
-appropriate <acronym>ASCII</acronym> code instead.
-Since two byte escape sequences, e.g., <code>\n</code>, represent one-byte
-<acronym>ASCII</acronym> codes, e.g., <acronym>ASCII</acronym> 10 (decimal), the stored
-string attribute is one byte shorter than the input string length for
-each embedded escape sequence.
-The most frequently used C-language escape sequences are <code>\n</code> (for
-linefeed) and <code>\t</code> (for horizontal tab).
-These sequences in particular allow convenient editing of formatted text
-attributes.
-<a name="index-_005ca-_0028ASCII-BEL_002c-bell_0029"></a>
-<a name="index-_005cb-_0028ASCII-BS_002c-backspace_0029"></a>
-<a name="index-_005cf-_0028ASCII-FF_002c-formfeed_0029"></a>
-<a name="index-_005cr-_0028ASCII-CR_002c-carriage-return_0029"></a>
-<a name="index-_005cv-_0028ASCII-VT_002c-vertical-tab_0029"></a>
-<a name="index-_005c_005c-_0028ASCII-_005c_002c-backslash_0029"></a>
-The other valid <acronym>ASCII</acronym> codes are <code>\a</code>, <code>\b</code>, <code>\f</code>,
-<code>\r</code>, <code>\v</code>, and <code>\\</code>.
-See <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>, for more examples of string formatting
-(with the <code>ncks</code> ‘<samp>-s</samp>’ option) with special characters.
-</p>
-<a name="index-_005c_0027-_0028protected-end-quote_0029"></a>
-<a name="index-_005c_0022-_0028protected-double-quote_0029"></a>
-<a name="index-_005c_003f-_0028protected-question-mark_0029"></a>
-<a name="index-_005c_005c-_0028protected-backslash_0029"></a>
-<a name="index-_0027-_0028end-quote_0029"></a>
-<a name="index-_0022-_0028double-quote_0029"></a>
-<a name="index-_003f-_0028question-mark_0029"></a>
-<a name="index-_005c-_0028backslash_0029"></a>
-<a name="index-special-characters"></a>
-<a name="index-ASCII-1"></a>
-<p>Analogous to <code>printf</code>, other special characters are also allowed by
-<code>ncatted</code> if they are “protected” by a backslash.
-The characters <code>"</code>, <code>'</code>, <code>?</code>, and <code>\</code> may be
-input to the shell as <code>\"</code>, <code>\'</code>, <code>\?</code>, and <code>\\</code>.
-<acronym>NCO</acronym> simply strips away the leading backslash from these
-characters before editing the attribute.
-No other characters require protection by a backslash.
-Backslashes which precede any other character (e.g., <code>3</code>, <code>m</code>,
-<code>$</code>, <code>|</code>, <code>&</code>, <code>@</code>, <code>%</code>, <code>{</code>, and
-<code>}</code>) will not be filtered and will be included in the attribute.
-</p>
-<a name="index-strings"></a>
-<a name="index-NUL_002dtermination"></a>
-<a name="index-NUL"></a>
-<a name="index-C-language-6"></a>
-<a name="index-0-_0028NUL_0029"></a>
-<p>Note that the NUL character <code>\0</code> which terminates C language<!-- /@w -->
-strings is assumed and need not be explicitly specified.
-If <code>\0</code> is input, it is translated to the NUL character.
-However, this will make the subsequent portion of the string, if any,
-invisible to C standard<!-- /@w --> library string functions.
-And that may cause unintended consequences.
-Because of these context-sensitive rules, one must use <code>ncatted</code>
-with care in order to store data, rather than text strings, in an
-attribute of type <code>NC_CHAR</code>.
-</p>
-<p>Note that <code>ncatted</code> interprets character attributes
-(i.e., attributes of type <code>NC_CHAR</code>) as strings.
-<a name="xmp_ncatted"></a> <!-- http://nco.sf.net/nco.html#xmp_ncatted -->EXAMPLES
-</p>
-<p>Append the string <code>Data version 2.0.\n</code> to the global attribute
-<code>history</code>:
-</p><div class="example">
-<pre class="example">ncatted -a history,global,a,c,'Data version 2.0\n' in.nc
-</pre></div>
-<p>Note the use of embedded C language<!-- /@w --> <code>printf()</code>-style escape
-sequences.
-</p>
-<p>Change the value of the <code>long_name</code> attribute for variable <code>T</code>
-from whatever it currently is to “temperature”:
-</p><div class="example">
-<pre class="example">ncatted -a long_name,T,o,c,temperature in.nc
-</pre></div>
-
-<a name="NaN"></a> <!-- http://nco.sf.net/nco.html#NaN --><a name="index-NaN"></a>
-<a name="index-IEEE-NaN"></a>
-<a name="index-Not_002da_002dNumber"></a>
-<p><acronym>NCO</acronym> arithmetic operators may not work as expected on
-<acronym>IEEE</acronym> NaN (short for Not-a-Number) and NaN-like numbers such as
-positive infinity and negative infinity
-<a name="DOCF57" href="#FOOT57"><sup>57</sup></a>.
-One way to work-around this problem is to change <acronym>IEEE</acronym> NaNs to
-normal missing values.
-As of <acronym>NCO</acronym> 4.1.0 (March, 2012), <code>ncatted</code> works with
-NaNs.
-First set the missing value (i.e., the value of the <code>_FillValue</code>
-attribute) for the variable(s) in question to the <acronym>IEEE</acronym> NaN value.
-</p><div class="example">
-<pre class="example">ncatted -a _FillValue,,o,f,NaN in.nc
-</pre></div>
-<p>Then change the missing value from the <acronym>IEEE</acronym> NaN value to a
-normal <acronym>IEEE</acronym> number, like 1.0e36 (or to whatever the original
-missing value was).
-</p><div class="example">
-<pre class="example">ncatted -a _FillValue,,m,f,1.0e36 in.nc
-</pre></div>
-
-<p>Delete all existing <code>units</code> attributes:
-</p><div class="example">
-<pre class="example">ncatted -a units,,d,, in.nc
-</pre></div>
-<p>The value of <var>var_nm</var> was left blank in order to select all
-variables in the file.
-The values of <var>att_type</var> and <var>att_val</var> were left blank because
-they are superfluous in <em>Delete</em> mode.
-</p>
-<a name="index-global-attribute"></a>
-<a name="index-global-attributes-5"></a>
-<a name="index-attributes_002c-global-5"></a>
-<p>Delete all attributes associated with the <code>tpt</code> variable, and
-delete all global attributes
-</p><div class="example">
-<pre class="example">ncatted -a ,tpt,d,, -a ,global,d,, in.nc
-</pre></div>
-<p>The value of <var>att_nm</var> was left blank in order to select all
-attributes associated with the variable.
-To delete all global attributes, simply replace <code>tpt</code> with
-<code>global</code> in the above.
-</p>
-<a name="index-units-3"></a>
-<p>Modify all existing <code>units</code> attributes to <code>meter second-1</code>:
-</p><div class="example">
-<pre class="example">ncatted -a units,,m,c,'meter second-1' in.nc
-</pre></div>
-
-<a name="index-units-4"></a>
-<p>Add a <code>units</code> attribute of <code>kilogram kilogram-1</code> to all
-variables whose first three characters are ‘<samp>H2O</samp>’:
-</p><div class="example">
-<pre class="example">ncatted -a units,'^H2O',c,c,'kilogram kilogram-1' in.nc
-</pre></div>
-
-<p>Overwrite the <code>quanta</code> attribute of variable
-<code>energy</code> to an array of four integers.
-</p><div class="example">
-<pre class="example">ncatted -a quanta,energy,o,s,'010,101,111,121' in.nc
-</pre></div>
-
-<a name="index-extended-regular-expressions-4"></a>
-<a name="index-regular-expressions-5"></a>
-<a name="index-pattern-matching-3"></a>
-<a name="index-wildcards-3"></a>
-<p>As of <acronym>NCO</acronym> 3.9.6 (January, 2009), <code>ncatted</code> accepts
-<em>extended regular expressions</em> as arguments for variable names,
-though not for attribute names.
-Create <code>isotope</code> attributes for all variables containing ‘<samp>H2O</samp>’
-in their names.
-</p><div class="example">
-<pre class="example">ncatted -a isotope,'^H2O*',c,s,'18' in.nc
-</pre></div>
-<p>See <a href="#Subsetting-Files">Subsetting Files</a> for more details.
-</p>
-<a name="index-groups-1"></a>
-<p>As of <acronym>NCO</acronym> 4.3.8 (November, 2013), <code>ncatted</code>
-accepts full and partial group paths in names of attributes,
-variables, dimensions, and groups.
-</p><div class="example">
-<pre class="example"># Overwrite units attribute of specific 'lon' variable
-ncatted -O -a units,/g1/lon,o,c,'degrees_west' in_grp.nc
-# Overwrite units attribute of all 'lon' variables
-ncatted -O -a units,lon,o,c,'degrees_west' in_grp.nc
-# Delete units attribute of all 'lon' variables
-ncatted -O -a units,lon,d,, in_grp.nc
-# Overwrite units attribute with new type for specific 'lon' variable
-ncatted -O -a units,/g1/lon,o,sng,'degrees_west' in_grp.nc
-# Add new_att attribute to all variables
-ncatted -O -a new_att,,c,sng,'new variable attribute' in_grp.nc
-# Add new_grp_att group attribute to all groups
-ncatted -O -a new_grp_att,group,c,sng,'new group attribute' in_grp.nc
-# Add new_grp_att group attribute to single group
-ncatted -O -a g1_grp_att,g1,c,sng,'new group attribute' in_grp.nc
-# Add new_glb_att global attribute to root group
-ncatted -O -a new_glb_att,global,c,sng,'new global attribute' in_grp.nc
-</pre></div>
-
-<p>Demonstrate input of C-language escape sequences (e.g., <code>\n</code>) and
-other special characters (e.g., <code>\"</code>)
-</p><div class="example">
-<pre class="example">ncatted -h -a special,global,o,c,
-'\nDouble quote: \"\nTwo consecutive double quotes: \"\"\n
-Single quote: Beyond my shell abilities!\nBackslash: \\\n
-Two consecutive backslashes: \\\\\nQuestion mark: \?\n' in.nc
-</pre></div>
-<p>Note that the entire attribute is protected from the shell by single
-quotes.
-These outer single quotes are necessary for interactive use, but may be
-omitted in batch scripts.
-</p>
-<a name="ncbo"></a> <!-- http://nco.sf.net/nco.html#ncbo -->
-<a name="ncdiff"></a> <!-- http://nco.sf.net/nco.html#ncdiff -->
-<a name="ncadd"></a> <!-- http://nco.sf.net/nco.html#ncadd -->
-<a name="ncsub"></a> <!-- http://nco.sf.net/nco.html#ncsub -->
-<a name="ncsubtract"></a> <!-- http://nco.sf.net/nco.html#ncsubtract -->
-<a name="ncmult"></a> <!-- http://nco.sf.net/nco.html#ncmult -->
-<a name="ncmultiply"></a> <!-- http://nco.sf.net/nco.html#ncmultiply -->
-<a name="ncdivide"></a> <!-- http://nco.sf.net/nco.html#ncdivide --><hr>
-<a name="ncbo-netCDF-Binary-Operator"></a>
-<div class="header">
-<p>
-Next: <a href="#nces-netCDF-Ensemble-Statistics" accesskey="n" rel="next">nces netCDF Ensemble Statistics</a>, Previous: <a href="#ncatted-netCDF-Attribute-Editor" accesskey="p" rel="prev">ncatted netCDF Attribute Editor</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncbo-netCDF-Binary-Operator-1"></a>
-<h3 class="section">4.3 <code>ncbo</code> netCDF Binary Operator</h3>
-<a name="index-ncbo-1"></a>
-<a name="index-ncdiff"></a>
-<a name="index-ncadd"></a>
-<a name="index-ncsub"></a>
-<a name="index-ncsubtract"></a>
-<a name="index-ncmult"></a>
-<a name="index-ncmultiply"></a>
-<a name="index-ncdivide"></a>
-<a name="index-binary-operations-1"></a>
-<a name="index-addition-1"></a>
-<a name="index-subtraction-1"></a>
-<a name="index-multiplication-1"></a>
-<a name="index-adding-data"></a>
-<a name="index-subtracting-data"></a>
-<a name="index-multiplying-data"></a>
-<a name="index-dividing-data"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncbo [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--no_tmp_fl]
-[-O] [-o <var>file_3</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x] [-y <var>op_typ</var>]
-<var>file_1</var> <var>file_2</var> [<var>file_3</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncbo</code> performs binary operations on variables in <var>file_1</var>
-and the corresponding variables (those with the same name) in
-<var>file_2</var> and stores the results in <var>file_3</var>.
-The binary operation operates on the entire files (modulo any excluded
-variables).
-See <a href="#Missing-Values">Missing Values</a>, for treatment of missing values.
-One of the four standard arithmetic binary operations currently
-supported must be selected with the ‘<samp>-y <var>op_typ</var></samp>’ switch (or
-long options ‘<samp>--op_typ</samp>’ or ‘<samp>--operation</samp>’).
-<a name="index-add"></a>
-<a name="index-subtract"></a>
-<a name="index-multiply"></a>
-<a name="index-divide"></a>
-<a name="index-_002b"></a>
-<a name="index-_002d"></a>
-<a name="index-_002a"></a>
-<a name="index-_002f"></a>
-<a name="index-_002dy-op_005ftyp-1"></a>
-<a name="index-_002d_002doperation-op_005ftyp-1"></a>
-<a name="index-_002d_002dop_005ftyp-op_005ftyp-1"></a>
-<a name="index-alternate-invocations"></a>
-The valid binary operations for <code>ncbo</code>, their definitions,
-corresponding values of the <var>op_typ</var> key, and alternate invocations
-are:
-</p><dl compact="compact">
-<dt><em>Addition</em></dt>
-<dd><p>Definition: <var>file_3</var> = <var>file_1</var> + <var>file_2</var><br>
-Alternate invocation: <code>ncadd</code><br>
-<var>op_typ</var> key values: ‘<samp>add</samp>’, ‘<samp>+</samp>’, ‘<samp>addition</samp>’<br>
-Examples: ‘<samp>ncbo --op_typ=add 1.nc 2.nc 3.nc</samp>’, ‘<samp>ncadd 1.nc 2.nc 3.nc</samp>’<br>
-</p></dd>
-<dt><em>Subtraction</em></dt>
-<dd><p>Definition: <var>file_3</var> = <var>file_1</var> - <var>file_2</var><br>
-Alternate invocations: <code>ncdiff</code>, <code>ncsub</code>, <code>ncsubtract</code><br>
-<var>op_typ</var> key values: ‘<samp>sbt</samp>’, ‘<samp>-</samp>’, ‘<samp>dff</samp>’, ‘<samp>diff</samp>’, ‘<samp>sub</samp>’, ‘<samp>subtract</samp>’, ‘<samp>subtraction</samp>’<br>
-Examples: ‘<samp>ncbo --op_typ=- 1.nc 2.nc 3.nc</samp>’, ‘<samp>ncdiff 1.nc 2.nc 3.nc</samp>’<br>
-</p></dd>
-<dt><em>Multiplication</em></dt>
-<dd><p>Definition: <var>file_3</var> = <var>file_1</var> * <var>file_2</var><br>
-Alternate invocations: <code>ncmult</code>, <code>ncmultiply</code><br>
-<var>op_typ</var> key values: ‘<samp>mlt</samp>’, ‘<samp>*</samp>’, ‘<samp>mult</samp>’, ‘<samp>multiply</samp>’, ‘<samp>multiplication</samp>’<br>
-Examples: ‘<samp>ncbo --op_typ=mlt 1.nc 2.nc 3.nc</samp>’, ‘<samp>ncmult 1.nc 2.nc 3.nc</samp>’<br>
-</p></dd>
-<dt><em>Division</em></dt>
-<dd><p>Definition: <var>file_3</var> = <var>file_1</var> / <var>file_2</var><br>
-Alternate invocation: <code>ncdivide</code><br>
-<var>op_typ</var> key values: ‘<samp>dvd</samp>’, ‘<samp>/</samp>’, ‘<samp>divide</samp>’, ‘<samp>division</samp>’<br>
-Examples: ‘<samp>ncbo --op_typ=/ 1.nc 2.nc 3.nc</samp>’, ‘<samp>ncdivide 1.nc 2.nc 3.nc</samp>’<br>
-</p></dd>
-</dl>
-<p>Care should be taken when using the shortest form of key values,
-i.e., ‘<samp>+</samp>’, ‘<samp>-</samp>’, ‘<samp>*</samp>’, and ‘<samp>/</samp>’<!-- /@w -->.
-Some of these single characters may have special meanings to the shell
-<a name="index-naked-characters"></a>
-<a name="DOCF58" href="#FOOT58"><sup>58</sup></a>.
-<a name="index-Bash-shell"></a>
-Place these characters inside quotes to keep them from being interpreted
-(globbed) by the shell
-<a name="DOCF59" href="#FOOT59"><sup>59</sup></a>.
-<a name="index-globbing-4"></a>
-<a name="index-shell-4"></a>
-<a name="index-quotes-2"></a>
-For example, the following commands are equivalent
-</p><div class="example">
-<pre class="example">ncbo --op_typ=* 1.nc 2.nc 3.nc # Dangerous (shell may try to glob)
-ncbo --op_typ='*' 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
-ncbo --op_typ="*" 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
-ncbo --op_typ=mlt 1.nc 2.nc 3.nc
-ncbo --op_typ=mult 1.nc 2.nc 3.nc
-ncbo --op_typ=multiply 1.nc 2.nc 3.nc
-ncbo --op_typ=multiplication 1.nc 2.nc 3.nc
-ncmult 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmult'
-ncmultiply 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmultiply'
-</pre></div>
-<p>No particular argument or invocation form is preferred.
-Users are encouraged to use the forms which are most intuitive to them.
-</p>
-<a name="index-alias"></a>
-<a name="index-ln-_002ds"></a>
-<a name="index-symbolic-links-3"></a>
-<p>Normally, <code>ncbo</code> will fail unless an operation type is specified
-with ‘<samp>-y</samp>’ (equivalent to ‘<samp>--op_typ</samp>’).
-You may create exceptions to this rule to suit your particular tastes,
-in conformance with your site’s policy on <em>symbolic links</em> to
-executables (files of a different name point to the actual executable).
-For many years, <code>ncdiff</code> was the main binary file operator.
-As a result, many users prefer to continue invoking <code>ncdiff</code>
-rather than memorizing a new command (‘<samp>ncbo -y <var>sbt</var></samp>’) which
-behaves identically to the original <code>ncdiff</code> command.
-However, from a software maintenance standpoint, maintaining a distinct
-executable for each binary operation (e.g., <code>ncadd</code>) is untenable,
-and a single executable, <code>ncbo</code>, is desirable.
-To maintain backward compatibility, therefore, <acronym>NCO</acronym>
-automatically creates a symbolic link from <code>ncbo</code> to
-<code>ncdiff</code>.
-Thus <code>ncdiff</code> is called an <em>alternate invocation</em> of
-<code>ncbo</code>.
-<code>ncbo</code> supports many additional alternate invocations which must
-be manually activated.
-Should users or system adminitrators decide to activate them, the
-procedure is simple.
-For example, to use ‘<samp>ncadd</samp>’ instead of ‘<samp>ncbo --op_typ=add</samp>’,
-simply create a symbolic link from <code>ncbo</code> to <code>ncadd</code>
-<a name="DOCF60" href="#FOOT60"><sup>60</sup></a>.
-The alternatate invocations supported for each operation type are listed
-above.
-Alternatively, users may always define ‘<samp>ncadd</samp>’ as an <em>alias</em> to
-‘<samp>ncbo --op_typ=add</samp>’
-<a name="DOCF61" href="#FOOT61"><sup>61</sup></a>.
-</p>
-<p>It is important to maintain portability in <acronym>NCO</acronym> scripts.
-Therefore we recommend that site-specfic invocations (e.g.,
-‘<samp>ncadd</samp>’) be used only in interactive sessions from the
-command-line.
-For scripts, we recommend using the full invocation (e.g.,
-‘<samp>ncbo --op_typ=add</samp>’).
-This ensures portability of scripts between users and sites.
-</p>
-<a name="brd_var"></a> <!-- http://nco.sf.net/nco.html#brd_var --><a name="index-broadcasting-variables-1"></a>
-<a name="index-rank-1"></a>
-<p><code>ncbo</code> operates (e.g., adds) variables in <var>file_2</var> with the
-corresponding variables (those with the same name) in <var>file_1</var> and
-stores the results in <var>file_3</var>.
-<a name="index-broadcasting-variables-2"></a>
-Variables in <var>file_1</var> or <var>file_2</var> are <em>broadcast</em> to conform
-to the corresponding variable in the other input file if
-necessary<a name="DOCF62" href="#FOOT62"><sup>62</sup></a>.
-Now <code>ncbo</code> is completely symmetric with respect to <var>file_1</var>
-and <var>file_2</var>, i.e.,
-<em><var>file_1</var> - <var>file_2</var> = - (<var>file_2</var> - <var>file_1</var></em>.
-</p>
-<p>Broadcasting a variable means creating data in non-existing dimensions
-by copying data in existing dimensions.
-For example, a two dimensional variable in <var>file_2</var> can be
-subtracted from a four, three, or two (not one or zero)
-dimensional variable (of the same name) in <code>file_1</code>.
-<a name="index-anomalies"></a>
-This functionality allows the user to compute anomalies from the mean.
-In the future, we will broadcast variables in <var>file_1</var>, if necessary
-to conform to their counterparts in <var>file_2</var>.
-<a name="index-rank-2"></a>
-Thus, presently, the number of dimensions, or <em>rank</em>, of any
-processed variable in <var>file_1</var> must be greater than or equal to the
-rank of the same variable in <var>file_2</var>.
-Of course, the size of all dimensions common to both <var>file_1</var> and
-<var>file_2</var> must be equal.
-</p>
-<p>When computing anomalies from the mean it is often the case that
-<var>file_2</var> was created by applying an averaging operator to a file
-with initially the same dimensions as <var>file_1</var> (often <var>file_1</var>
-itself).
-In these cases, creating <var>file_2</var> with <code>ncra</code> rather than
-<code>ncwa</code> will cause the <code>ncbo</code> operation to fail.
-For concreteness say the record dimension in <code>file_1</code> is
-<code>time</code>.
-If <var>file_2</var> was created by averaging <var>file_1</var> over the
-<code>time</code> dimension with the <code>ncra</code> operator (rather than with
-the <code>ncwa</code> operator), then <var>file_2</var> will have a <code>time</code>
-dimension of size 1<!-- /@w --> rather than having no <code>time</code> dimension at
-all
-<a name="index-degenerate-dimension-3"></a>
-<a name="index-_002db-1"></a>
-<a name="DOCF63" href="#FOOT63"><sup>63</sup></a>.
-In this case the input files to <code>ncbo</code>, <var>file_1</var> and
-<var>file_2</var>, will have unequally sized <code>time</code> dimensions which
-causes <code>ncbo</code> to fail.
-To prevent this from occuring, use <code>ncwa</code> to remove the
-<code>time</code> dimension from <var>file_2</var>.
-See the example below.
-</p>
-<a name="index-coordinate-variable-3"></a>
-<a name="index-NC_005fCHAR-1"></a>
-<p><code>ncbo</code> never operates on coordinate variables or variables
-of type <code>NC_CHAR</code> or <code>NC_STRING</code>.
-This ensures that coordinates like (e.g., latitude and longitude) are
-physically meaningful in the output file, <var>file_3</var>.
-This behavior is hardcoded.
-<a name="index-CF-conventions-5"></a>
-<code>ncbo</code> applies special rules to some
-<acronym>CF</acronym>-defined (and/or <acronym>NCAR CCSM</acronym> or <acronym>NCAR CCM</acronym>
-fields) such as <code>ORO</code>.
-See <a href="#CF-Conventions">CF Conventions</a> for a complete description.
-Finally, we note that <code>ncflint</code> (see <a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a>) is designed for file interpolation.
-As such, it also performs file subtraction, addition, multiplication,
-albeit in a more convoluted way than <code>ncbo</code>.
-</p>
-<a name="grp_brd"></a> <!-- http://nco.sf.net/nco.html#grp_brd -->
-<a name="brd_grp"></a> <!-- http://nco.sf.net/nco.html#brd_grp -->
-<a name="gb"></a> <!-- http://nco.sf.net/nco.html#gb -->
-<a name="GB"></a> <!-- http://nco.sf.net/nco.html#GB --><a name="index-broadcasting-groups-1"></a>
-<p>Beginning with <acronym>NCO</acronym> version 4.3.1 (May, 2013), <code>ncbo</code>
-supports <em>group broadcasting</em>.
-Group broadcasting means processing data based on group patterns in the
-input file(s) and automatically transferring or transforming groups to
-the output file.
-Consider the case where <var>file_1</var> contains multiple groups each with
-the variable <var>v1</var>, while <var>file_2</var> contains <var>v1</var> only in its
-top-level (i.e., root) group.
-Then <code>ncbo</code> will replicate the group structure of <var>file_1</var>
-in the output file, <var>file_3</var>.
-Each group in <var>file_3</var> contains the output of the corresponding
-group in <var>file_1</var> operating on the data in the single group in
-<var>file_2</var>.
-An example is provided below.
-</p>
-<a name="xmp_ncbo"></a> <!-- http://nco.sf.net/nco.html#xmp_ncbo -->
-<a name="xmp_ncdiff"></a> <!-- http://nco.sf.net/nco.html#xmp_ncdiff --><p>EXAMPLES
-</p>
-<p>Say files <samp>85_0112.nc</samp> and <samp>86_0112.nc</samp> each contain 12 months
-of data.
-Compute the change in the monthly averages from 1985 to 1986:
-</p><div class="example">
-<pre class="example">ncbo 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncdiff 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncbo --op_typ=sub 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncbo --op_typ='-' 86_0112.nc 85_0112.nc 86m85_0112.nc
-</pre></div>
-<p>These commands are all different ways of expressing the same thing.
-</p>
-<a name="index-broadcasting"></a>
-<a name="index-rank-3"></a>
-<p>The following examples demonstrate the broadcasting feature of
-<code>ncbo</code>.
-Say we wish to compute the monthly anomalies of <code>T</code> from the yearly
-average of <code>T</code> for the year 1985.
-First we create the 1985 average from the monthly data, which is stored
-with the record dimension <code>time</code>.
-</p><div class="example">
-<pre class="example">ncra 85_0112.nc 85.nc
-ncwa -O -a time 85.nc 85.nc
-</pre></div>
-<p>The second command, <code>ncwa</code>, gets rid of the <code>time</code> dimension
-of size 1<!-- /@w --> that <code>ncra</code> left in <samp>85.nc</samp>.
-Now none of the variables in <samp>85.nc</samp> has a <code>time</code> dimension.
-A quicker<!-- /@w --> way to accomplish this is to use <code>ncwa</code> from the
-beginning:
-</p><div class="example">
-<pre class="example">ncwa -a time 85_0112.nc 85.nc
-</pre></div>
-<p>We are now ready to use <code>ncbo</code> to compute the anomalies for 1985:
-</p><div class="example">
-<pre class="example">ncdiff -v T 85_0112.nc 85.nc t_anm_85_0112.nc
-</pre></div>
-<p>Each of the 12 records in <samp>t_anm_85_0112.nc</samp> now contains the
-monthly deviation of <code>T</code> from the annual mean of <code>T</code> for each
-gridpoint.
-</p>
-<p>Say we wish to compute the monthly gridpoint anomalies from the zonal
-annual mean.
-A <em>zonal mean</em><!-- /@w --> is a quantity that has been averaged over the
-longitudinal (or <var>x</var>) direction.
-First we use <code>ncwa</code> to average over longitudinal direction
-<code>lon</code>, creating <samp>85_x.nc</samp>, the zonal mean of <samp>85.nc</samp>.
-Then we use <code>ncbo</code> to subtract the zonal annual means from the
-monthly gridpoint data:
-</p><div class="example">
-<pre class="example">ncwa -a lon 85.nc 85_x.nc
-ncdiff 85_0112.nc 85_x.nc tx_anm_85_0112.nc
-</pre></div>
-<p>This examples works assuming <samp>85_0112.nc</samp> has dimensions
-<code>time</code> and <code>lon</code>, and that <samp>85_x.nc</samp> has no <code>time</code>
-or <code>lon</code> dimension.
-</p>
-<a name="index-broadcasting-groups-2"></a>
-<p>Group broadcasting simplifies evaluation of multiple models against
-observations.
-Consider the input file <samp>cmip5.nc</samp> which contains multiple
-top-level groups <code>cesm</code>, <code>ecmwf</code>, and <code>giss</code>, each of
-which contains the surface air temperature field <code>tas</code>.
-We wish to compare these models to observations stored in <samp>obs.nc</samp>
-which contains <code>tas</code> only in its top-level (i.e., root) group.
-It is often the case that many models and/or model simulations exist,
-whereas only one observational dataset does.
-We evaluate the models and obtain the bias (difference) between models
-and observations by subtracting <samp>obs.nc</samp> from <samp>cmip5.nc</samp>.
-Then <code>ncbo</code> “broadcasts” (i.e., replicates) the observational
-data to match the group structure of <samp>cmip5.nc</samp>, subtracts,
-and then stores the results in the output file, <samp>bias.nc</samp>
-which has the same group structure as <samp>cmip5.nc</samp>.
-</p><div class="example">
-<pre class="example">% ncbo -O cmip5.nc obs.nc bias.nc
-% ncks -H -v tas -d time,3 bias.nc
-/cesm/tas
-time[3] tas[3]=-1
-/ecmwf/tas
-time[3] tas[3]=0
-/giss/tas
-time[3] tas[3]=1
-</pre></div>
-
-<a name="csn_anm"></a> <!-- http://nco.sf.net/nco.html#csn_anm --><p>As a final example, say we have five years of monthly data (i.e.,
-60 months<!-- /@w -->) stored in <samp>8501_8912.nc</samp> and we wish to create a
-file which contains the twelve month seasonal cycle of the average
-monthly anomaly from the five-year mean of this data.
-The following method is just one permutation of many which will
-accomplish the same result.
-First use <code>ncwa</code> to create the five-year mean:
-</p><div class="example">
-<pre class="example">ncwa -a time 8501_8912.nc 8589.nc
-</pre></div>
-<p>Next use <code>ncbo</code> to create a file containing the difference of
-each month’s data from the five-year mean:
-</p><div class="example">
-<pre class="example">ncbo 8501_8912.nc 8589.nc t_anm_8501_8912.nc
-</pre></div>
-<p>Now use <code>ncks</code> to group together the five January anomalies in
-one file, and use <code>ncra</code> to create the average anomaly for all
-five Januarys.
-These commands are embedded in a shell loop so they are repeated for all
-twelve months:
-<a name="index-Bash-Shell"></a>
-<a name="index-Bourne-Shell-1"></a>
-<a name="index-C-Shell-1"></a>
-</p><div class="example">
-<pre class="verbatim">for idx in {1..12}; do # Bash Shell (version 3.0+)
- idx=`printf "%02d" ${idx}` # Zero-pad to preserve order
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-done
-for idx in 01 02 03 04 05 06 07 08 09 10 11 12; do # Bourne Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-done
-foreach idx (01 02 03 04 05 06 07 08 09 10 11 12) # C Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-end
-</pre></div>
-<p>Note that <code>ncra</code> understands the <code>stride</code> argument so the
-two commands inside the loop may be combined into the single command
-</p><div class="example">
-<pre class="verbatim">ncra -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
-</pre></div>
-<p>Finally, use <code>ncrcat</code> to concatenate the 12 average<!-- /@w --> monthly
-anomaly files into one twelve-record file which contains the entire
-seasonal cycle of the monthly anomalies:
-</p><div class="example">
-<pre class="example">ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
-</pre></div>
-
-<a name="nces"></a> <!-- http://nco.sf.net/nco.html#nces -->
-<a name="ncea"></a> <!-- http://nco.sf.net/nco.html#ncea --><hr>
-<a name="nces-netCDF-Ensemble-Statistics"></a>
-<div class="header">
-<p>
-Next: <a href="#ncecat-netCDF-Ensemble-Concatenator" accesskey="n" rel="next">ncecat netCDF Ensemble Concatenator</a>, Previous: <a href="#ncbo-netCDF-Binary-Operator" accesskey="p" rel="prev">ncbo netCDF Binary Operator</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="nces-netCDF-Ensemble-Statistics-1"></a>
-<h3 class="section">4.4 <code>nces</code> netCDF Ensemble Statistics</h3>
-<a name="index-averaging-data-1"></a>
-<a name="index-ensemble-average"></a>
-<a name="index-nces-2"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">nces [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-n <var>loop</var>] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sfx sfx]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x] [-y <var>op_typ</var>]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>nces</code> performs gridpoint statistics on variables across an
-arbitrary number (an <em>ensemble</em>) of <var>input-files</var> and/or of
-input groups within each file.
-Each file (or group) receives an equal weight.
-<code>nces</code> was formerly (until <acronym>NCO</acronym> version 4.3.9,
-released December, 2013) known as <code>ncea</code> (netCDF Ensemble
-Averager)<a name="DOCF64" href="#FOOT64"><sup>64</sup></a>.
-<a name="index-ensemble-1"></a>
-For example, <code>nces</code> will average a set of files or groups,
-weighting each file or group evenly.
-This is distinct from <code>ncra</code>, which performs statistics only
-over the record dimension(s) (e.g., <var>time</var>), and weights each record
-in each record dimension evenly.
-</p>
-<p>The file or group is the logical unit of organization for the results of
-many scientific studies.
-Often one wishes to generate a file or group which is the statistical
-product (e.g., average) of many separate files or groups.
-This may be to reduce statistical noise by combining the results of a
-large number of experiments, or it may simply be a step in a procedure
-whose goal is to compute anomalies from a mean state.
-In any case, when one desires to generate a file whose statistical
-properties are equally influenced by all the inputs, then <code>nces</code>
-is the operator to use.
-</p>
-<p>Variables in the <var>output-file</var> are the same size as the variable
-hyperslab in each input file or group, and each input file or group
-must be the same size after hyperslabbing
-<a name="DOCF65" href="#FOOT65"><sup>65</sup></a>
-<a name="index-record-dimension-3"></a>
-<a name="index-hyperslab-2"></a>
-<code>nces</code> does allow files to differ in the record dimension size
-if the requested record hyperslab (see <a href="#Hyperslabs">Hyperslabs</a>) resolves to the
-same size for all files.
-<code>nces</code> recomputes the record dimension hyperslab limits for
-each input file so that coordinate limits may be used to select equal
-length timeseries from unequal length files.
-<a name="index-IPCC"></a>
-<a name="index-AR4"></a>
-<a name="index-CMIP"></a>
-This simplifies analysis of unequal length timeseries from simulation
-ensembles (e.g., the <acronym>CMIP3</acronym> <acronym>IPCC</acronym> <acronym>AR4</acronym>
-archive).
-</p>
-<a name="nsm_fl"></a> <!-- http://nco.sf.net/nco.html#nsm_fl -->
-<a name="nsm_grp"></a> <!-- http://nco.sf.net/nco.html#nsm_grp -->
-<a name="nsm_sfx"></a> <!-- http://nco.sf.net/nco.html#nsm_sfx --><a name="index-_002d_002dnsm_005ffl"></a>
-<a name="index-_002d_002dnsm_005fgrp"></a>
-<a name="index-_002d_002densemble_005ffile"></a>
-<a name="index-_002d_002densemble_005fgroup"></a>
-<a name="index-_002d_002dnsm_005fsfx"></a>
-<a name="index-_002d_002densemble_005fsuffix"></a>
-<p><code>nces</code> works in one of two modes, file ensembles
-or group ensembles.
-File ensembles are the default (equivalent to the old <code>ncea</code>)
-and may also be explicitly specified by the ‘<samp>--nsm_fl</samp>’ or
-‘<samp>--ensemble_file</samp>’ switches.
-To perform statistics on ensembles of groups, a newer feature, use
-‘<samp>--nsm_grp</samp>’ or ‘<samp>--ensemble_group</samp>’.
-Members of a group ensemble are groups that share the same structure,
-parent group, and nesting level.
-Members must be <em>leaf groups</em>, i.e., not contain any sub-groups.
-Their contents usually have different values because they are
-realizations of replicated experiments.
-In group ensemble mode <code>nces</code> computes the statistics across
-the ensemble, which may span multiple input files.
-Files may contain members of multiple, distinct ensembles.
-However, all ensembles must have at least one member in the first input
-file.
-Group ensembles behave as an unlimited dimension of datasets:
-they may contain an arbitrary and extensible number of realizations in
-each file, and may be composed from multiple files.
-</p>
-<p>Output statistics in group ensemble mode are stored in the parent group
-by default.
-If the ensemble members are <samp>/cesm/cesm_01</samp> and
-<samp>/cesm/cesm_02</samp>, then the computed statistic will be in
-<samp>/cesm</samp> in the output file.
-The ‘<samp>--nsm_sfx</samp>’ option instructs nces to instead store output in
-a new child group of the parent created by attaching the suffix
-to the parent group’s name, e.g., ‘<samp>--nsm_sfx='_avg'</samp>’ would store
-results in the output group <samp>/cesm/cesm_avg</samp>:
-</p><div class="example">
-<pre class="example">nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
-nces --nsm_grp --nsm_sfx='_avg' mdl1.nc mdl2.nc mdl3.nc out.nc
-</pre></div>
-
-<p>See <a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a>, for a description of the
-distinctions between the statistics tools and concatenators.
-<a name="index-multi_002dfile-operators-3"></a>
-<a name="index-standard-input-1"></a>
-<a name="index-stdin-2"></a>
-As a multi-file operator, <code>nces</code> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-</p>
-<p>Like <code>ncra</code> and <code>ncwa</code>, <code>nces</code> treats coordinate
-variables as a special case.
-Coordinate variables are assumed to be the same in all ensemble members,
-so <code>nces</code> simply copies the coordinate variables that appear in
-ensemble members directly to the output file.
-This has the same effect as averaging the coordinate variable across the
-ensemble, yet does not incur the time- or precision- penalties of
-actually averaging them.
-<code>ncra</code> and <code>ncwa</code> allow coordinate variables to be
-processed only by the linear average operation, regardless of the
-arithmetic operation type performed on the non-coordinate variables
-(see <a href="#Operation-Types">Operation Types</a>).
-Thus it can be said that the three operators (<code>ncra</code>,
-<code>ncwa</code>, and <code>nces</code>) all average coordinate variables
-(even though <code>nces</code> simply copies them).
-All other requested arithmetic operations (e.g., maximization,
-square-root, RMS) are applied only to non-coordinate variables.
-In these cases the linear average of the coordinate variable will be
-returned.
-</p>
-<a name="xmp_ncea"></a> <!-- http://nco.sf.net/nco.html#xmp_ncea -->
-<a name="xmp_nces"></a> <!-- http://nco.sf.net/nco.html#xmp_nces --><p>EXAMPLES
-</p>
-<p>Consider a model experiment which generated five realizations of one
-year of data, say 1985.
-Imagine that the experimenter slightly perturbs the initial conditions
-of the problem before generating each new solution.
-Assume each file contains all twelve months (a seasonal cycle) of data
-and we want to produce a single file containing the ensemble average
-(mean) seasonal cycle.
-Here the numeric filename suffix denotes the realization number
-(<em>not</em> the month):
-</p><div class="example">
-<pre class="example">nces 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
-nces 85_0[1-5].nc 85.nc
-nces -n 5,2,1 85_01.nc 85.nc
-</pre></div>
-<p>These three commands produce identical answers.
-See <a href="#Specifying-Input-Files">Specifying Input Files</a>, for an explanation of the distinctions
-between these methods.
-The output file, <samp>85.nc</samp>, is the same size as the inputs files.
-It contains 12 months of data (which might or might not be stored in the
-record dimension, depending on the input files), but each value in the
-output file is the average of the five values in the input files.
-</p>
-<p>In the previous example, the user could have obtained the ensemble
-average values in a particular spatio-temporal region by adding a
-hyperslab argument to the command, e.g.,
-</p><div class="example">
-<pre class="example">nces -d time,0,2 -d lat,-23.5,23.5 85_??.nc 85.nc
-</pre></div>
-<p>In this case the output file would contain only three slices of data in
-the <var>time</var> dimension.
-These three slices are the average of the first three slices from the
-input files.
-Additionally, only data inside the tropics is included.
-</p>
-<p>As of <acronym>NCO</acronym> version 4.3.9 (released December, 2013)
-<code>nces</code> also works with groups (rather than files) as the
-fundamental unit of the ensemble.
-Consider two ensembles, <code>/ecmwf</code> and <code>/cesm</code> stored across
-three input files <samp>mdl1.nc</samp>, <samp>mdl2.nc</samp>, and <samp>mdl3.nc</samp>.
-Ensemble members would be leaf groups with names like <code>/ecmwf/01</code>,
-<code>/ecmwf/02</code> etc. and <code>/cesm/01</code>, <code>/cesm/02</code>, etc.
-These commands average both ensembles:
-</p><div class="example">
-<pre class="example">nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
-nces --nsm_grp --nsm_sfx='_min' --op_typ=min -n 3,1,1 mdl1.nc out.nc
-nces --nsm_grp -g cesm -v tas -d time,0,3 -n 3,1,1 mdl1.nc out.nc
-</pre></div>
-<p>The first command stores averages in the output groups <samp>/cesm</samp> and
-<samp>/ecmwf</samp>, while the second stores minima in the output groups
-<samp>/cesm/cesm_min</samp> and <samp>/ecmwf/ecmwf_min</samp>:
-The third command demonstrates that sub-setting and hyperslabbing work
-as expected.
-Note that each input file may contain different numbers of members
-of each ensemble, as long as all distinct ensembles contain at least one
-member in the first file.
-</p>
-<a name="ncecat"></a> <!-- http://nco.sf.net/nco.html#ncecat --><hr>
-<a name="ncecat-netCDF-Ensemble-Concatenator"></a>
-<div class="header">
-<p>
-Next: <a href="#ncflint-netCDF-File-Interpolator" accesskey="n" rel="next">ncflint netCDF File Interpolator</a>, Previous: <a href="#nces-netCDF-Ensemble-Statistics" accesskey="p" rel="prev">nces netCDF Ensemble Statistics</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncecat-netCDF-Ensemble-Concatenator-1"></a>
-<h3 class="section">4.5 <code>ncecat</code> netCDF Ensemble Concatenator</h3>
-<a name="index-concatenation-1"></a>
-<a name="index-ensemble-concatenation"></a>
-<a name="index-ncecat-1"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncecat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [--gag] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [--md5_digest] [--mrd] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [-u <var>ulm_nm</var>] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncecat</code> aggregates an arbitrary number of input files into a
-single output file using using one of two methods.
-<em>Record AGgregation</em> (<acronym>RAG</acronym>), the traditional method employed on
-(flat) netCDF3 files and still the default method, stores
-<var>input-files</var> as consecutive records in the <var>output-file</var>.
-<em>Group AGgregation</em> (<acronym>GAG</acronym>) stores <var>input-files</var> as top-level
-groups in the netCDF4 <var>output-file</var>.
-Record Aggregation (<acronym>RAG</acronym>) makes numerous assumptions about the
-structure of input files whereas Group Aggregation (<acronym>GAG</acronym>) makes
-none.
-Both methods are described in detail below.
-Since <code>ncecat</code> aggregates all the contents of the input files,
-it can easily produce large output files so it is often helpful to invoke
-subsetting simultaneously (see <a href="#Subsetting-Files">Subsetting Files</a>).
-</p>
-<a name="rag"></a> <!-- http://nco.sf.net/nco.html#rag --><a name="index-record-aggregation"></a>
-<a name="index-RAG"></a>
-<p><acronym>RAG</acronym> makes each variable (except coordinate variables) in each
-input file into a single record of the same variable in the output file.
-Coordinate variables are not concatenated, they are instead simply
-copied from the first input file to the <var>output-file</var>.
-All <var>input-files</var> must contain all extracted variables (or else
-there would be “gaps” in the output file).
-</p>
-<p>A new record dimension is the glue which binds together the input file
-data.
-The new record dimension is defined in the root group of the output file
-so it is visible to all sub-groups.
-Its name is, by default, “record”.
-<a name="index-unlimited-dimension"></a>
-<a name="index-record-dimension-4"></a>
-<a name="index-_002du-ulm_005fnm"></a>
-<a name="index-_002d_002dulm_005fnm-ulm_005fnm"></a>
-<a name="index-_002d_002drcd_005fnm-ulm_005fnm"></a>
-This default name can be overridden with the ‘<samp>-u <var>ulm_nm</var></samp>’
-short option (or the ‘<samp>--ulm_nm</samp>’ or ‘<samp>rcd_nm</samp>’ long options).
-</p>
-<p>Each extracted variable must be constant in size and rank across all
-<var>input-files</var>.
-<a name="index-record-dimension-5"></a>
-<a name="index-hyperslab-3"></a>
-The only exception is that <code>ncecat</code> allows files to differ in
-the record dimension size if the requested record hyperslab
-(see <a href="#Hyperslabs">Hyperslabs</a>) resolves to the same size for all files.
-<a name="index-CMIP-1"></a>
-This allows easier gluing/averaging of unequal length timeseries from
-simulation ensembles (e.g., the <acronym>CMIP</acronym> rchive).
-</p>
-<a name="index-fixed-dimension"></a>
-<a name="index-fix-record-dimension"></a>
-<p>Classic (i.e., all netCDF3 and <code>NETCDF4_CLASSIC</code>) output files
-can contain only one record dimension.
-<code>ncecat</code> makes room for the new glue record dimension by
-changing the pre-existing record dimension, if any, in the input files
-into a fixed dimension in the output file.
-netCDF4 output files may contain any number of record dimensions, so
-<code>ncecat</code> need not and does not alter the record dimensions,
-if any, of the input files as it copies them to the output file.
-</p>
-<a name="gag"></a> <!-- http://nco.sf.net/nco.html#gag --><a name="index-group-aggregation"></a>
-<a name="index-GAG"></a>
-<p><em>Group AGgregation</em> (<acronym>GAG</acronym>) stores <var>input-files</var> as
-top-level groups in the <var>output-file</var>.
-No assumption is made about the size or shape or type of a given
-object (variable or dimension or group) in the input file.
-The entire contents of the extracted portion of each input file
-is placed in its own top-level group in <var>output-file</var>, which
-is automatically made as a netCDF4-format file.
-</p>
-<a name="index-_002d_002dgag"></a>
-<p><acronym>GAG</acronym> has two methods to specify group names for the
-<var>output-file</var>.
-The ‘<samp>-G</samp>’ option, or its long-option equivalent ‘<samp>--gpe</samp>’,
-takes as argument a group path editing description <var>gpe_dsc</var> of
-where to place the results.
-Each input file needs a distinct output group name to avoid namespace
-conflicts in the <var>output-file</var>.
-Hence <code>ncecat</code> automatically creates unique output group names
-based on either the input filenames or the <var>gpe_dsc</var> arguments.
-When the user provides <var>gpe_dsc</var> (i.e., with ‘<samp>-G</samp>’), then the
-output groups are formed by enumerating sequential two-digit numeric
-suffixes starting with zero, and appending them to the specified group
-path (see <a href="#Group-Path-Editing">Group Path Editing</a>).
-When <var>gpe_dsc</var> is not provided (i.e., user requests <acronym>GAG</acronym> with
-‘<samp>--gag</samp>’ instead of ‘<samp>-G</samp>’), then <code>ncecat</code> forms the
-output groups by stripping the input file name of any type-suffix
-(e.g., <code>.nc</code>), and all but the final component of the full
-filename.
-</p><div class="example">
-<pre class="example">ncecat --gag 85.nc 86.nc 87.nc 8587.nc # Output groups 85, 86, 87
-ncecat -G 85_ a.nc b.nc c.nc 8589.nc # Output groups 85_00, 85_01, 85_02
-ncecat -G 85/ a.nc b.nc c.nc 8589.nc # Output groups 85/00, 85/01, 85/02
-</pre></div>
-
-<p>With both <acronym>RAG</acronym> and <acronym>GAG</acronym> the <var>output-file</var> size is
-the sum of the sizes of the extracted variables in the input files.
-See <a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<a name="index-multi_002dfile-operators-4"></a>
-<a name="index-standard-input-2"></a>
-<a name="index-stdin-3"></a>
-As a multi-file operator, <code>ncecat</code> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-</p>
-<a name="index-_002dM-1"></a>
-<a name="index-_002d_002dglb_005fmtd_005fspp"></a>
-<a name="index-metadata_002c-global"></a>
-<p>Suppress global metadata copying.
-By default <acronym>NCO</acronym>’s multi-file operators copy the global metadata
-from the first input file into <var>output-file</var>.
-This helps to preserve the provenance of the output data.
-However, the use of metadata is burgeoning and is not uncommon to
-encounter files with excessive amounts of extraneous metadata.
-Extracting small bits of data from such files leads to output files
-which are much larger than necessary due to the automatically copied
-metadata.
-<code>ncecat</code> supports turning off the default copying of global
-metadata via the ‘<samp>-M</samp>’ switch (or its long option equivalents,
-‘<samp>--glb_mtd_spp</samp>’ and ‘<samp>--global_metadata_suppress</samp>’).
-</p>
-<a name="index-climate-model-4"></a>
-<p>Consider five realizations, <samp>85a.nc</samp>, <samp>85b.nc</samp>,
-… <samp>85e.nc</samp><!-- /@w --> of 1985 predictions from the same climate
-model.
-Then <code>ncecat 85?.nc 85_ens.nc</code> glues together the individual
-realizations into the single file, <samp>85_ens.nc</samp>.
-If an input variable was dimensioned [<code>lat</code>,<code>lon</code>], it will
-by default have dimensions [<code>record</code>,<code>lat</code>,<code>lon</code>] in
-the output file.
-A restriction<!-- /@w --> of <code>ncecat</code> is that the hyperslabs of the
-processed variables must be the same from file to file.
-Normally this means all the input files are the same size, and contain
-data on different realizations of the same variables.
-</p>
-<a name="index-ncpdq-3"></a>
-<a name="index-packing-3"></a>
-<a name="index-unpacking-2"></a>
-<a name="index-add_005foffset-2"></a>
-<a name="index-scale_005ffactor-1"></a>
-<p>Concatenating a variable packed with different scales across multiple
-datasets is beyond the capabilities of <code>ncecat</code> (and
-<code>ncrcat</code>, the other concatenator (<a href="#Concatenation">Concatenation</a>).
-<code>ncecat</code> does not unpack data, it simply <em>copies</em> the data
-from the <var>input-files</var>, and the metadata from the <em>first</em>
-<var>input-file</var>, to the <var>output-file</var>.
-This means that data compressed with a packing convention must use
-the identical packing parameters (e.g., <code>scale_factor</code> and
-<code>add_offset</code>) for a given variable across <em>all</em> input files.
-Otherwise the concatenated dataset will not unpack correctly.
-The workaround for cases where the packing parameters differ across
-<var>input-files</var> requires three steps:
-First, unpack the data using <code>ncpdq</code>.
-Second, concatenate the unpacked data using <code>ncecat</code>,
-Third, re-pack the result with <code>ncpdq</code>.
-</p>
-<a name="xmp_ncecat"></a> <!-- http://nco.sf.net/nco.html#xmp_ncecat --><p>EXAMPLES
-</p>
-<p>Consider a model experiment which generated five realizations of one
-year of data, say 1985.
-You can imagine that the experimenter slightly perturbs the
-initial conditions of the problem before generating each new solution.
-Assume each file contains all twelve months (a seasonal cycle) of data
-and we want to produce a single file containing all the seasonal
-cycles.
-Here the numeric filename suffix denotes the experiment number
-(<em>not</em> the month):
-</p><div class="example">
-<pre class="example">ncecat 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
-ncecat 85_0[1-5].nc 85.nc
-ncecat -n 5,2,1 85_01.nc 85.nc
-</pre></div>
-<p>These three commands produce identical answers.
-See <a href="#Specifying-Input-Files">Specifying Input Files</a>, for an explanation of the distinctions
-between these methods.
-The output file, <samp>85.nc</samp>, is five times the size as a single
-<var>input-file</var>.
-It contains 60 months<!-- /@w --> of data.
-</p>
-<a name="ncecat_rnm"></a> <!-- http://nco.sf.net/nco.html#ncecat_rnm --><p>One often prefers that the (new) record dimension have a more
-descriptive, context-based name than simply “record”.
-This is easily accomplished with the ‘<samp>-u <var>ulm_nm</var></samp>’ switch:
-</p><div class="example">
-<pre class="example">ncecat -u realization 85_0[1-5].nc 85.nc
-</pre></div>
-<p>Users are more likely to understand the data processing history when
-such descriptive coordinates are used.
-</p>
-<a name="dmn_rcd_rm"></a> <!-- http://nco.sf.net/nco.html#dmn_rcd_rm --><a name="index-record-dimension-6"></a>
-<a name="index-fixed-dimension-1"></a>
-<a name="index-fix-record-dimension-1"></a>
-<a name="index-_002d_002dmk_005frec_005fdmn-dim"></a>
-<p>Consider a file with an existing record dimension named <code>time</code>.
-and suppose the user wishes to convert <code>time</code> from a record
-dimension to a non-record dimension.
-This may be useful, for example, when the user has another use for the
-record variable.
-The simplest method is to use ‘<samp>ncks --fix_rec_dmn</samp>’ but another
-possibility is to use <code>ncecat</code> followed by
-<code>ncwa</code>:
-<a name="index-degenerate-dimension-4"></a>
-</p><div class="example">
-<pre class="example">ncecat in.nc out.nc # Convert time to non-record dimension
-ncwa -a record in.nc out.nc # Remove new degenerate record dimension
-</pre></div>
-<p>The second step removes the degenerate record dimension.
-See <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a> and
-<a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a> for other methods of
-of changing variable dimensionality, including the record dimension.
-</p>
-<a name="ncflint"></a> <!-- http://nco.sf.net/nco.html#ncflint --><hr>
-<a name="ncflint-netCDF-File-Interpolator"></a>
-<div class="header">
-<p>
-Next: <a href="#ncks-netCDF-Kitchen-Sink" accesskey="n" rel="next">ncks netCDF Kitchen Sink</a>, Previous: <a href="#ncecat-netCDF-Ensemble-Concatenator" accesskey="p" rel="prev">ncecat netCDF Ensemble Concatenator</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncflint-netCDF-File-Interpolator-1"></a>
-<h3 class="section">4.6 <code>ncflint</code> netCDF File Interpolator</h3>
-<a name="index-interpolation"></a>
-<a name="index-adding-data-1"></a>
-<a name="index-multiplying-data-1"></a>
-<a name="index-addition-2"></a>
-<a name="index-ncflint-2"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncflint [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]
-[-F] [--fix_rec_crd] [-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdr_pad <var>nbr</var>]
-[-i <var>var</var>,<var>val3</var>] [-L <var>dfl_lvl</var>] [-l <var>path</var>] [--no_tmp_fl]
-[-O] [-o <var>file_3</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-w <var>wgt1</var>[,<var>wgt2</var>]] [-X ...] [-x]
-<var>file_1</var> <var>file_2</var> [<var>file_3</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncflint</code> creates an output file that is a linear combination of
-the input files.
-This linear combination is a weighted average, a normalized weighted
-average, or an interpolation of the input files.
-Coordinate variables are not acted upon in any case, they are simply
-copied from <var>file_1</var>.
-</p>
-<p>There are two conceptually distinct methods of using <code>ncflint</code>.
-The first method is to specify the weight each input file contributes to
-the output file.
-In this method, the value <var>val3</var> of a variable in the output file
-<var>file_3</var> is determined from its values <var>val1</var> and <var>val2</var> in
-the two input files according to
-<em><var>val3</var> = <var>wgt1</var>*<var>val1</var> + <var>wgt2</var>*<var>val2</var></em>
-.
-Here at least <var>wgt1</var>, and, optionally, <var>wgt2</var>, are specified on
-the command line with the ‘<samp>-w</samp>’ (or ‘<samp>--weight</samp>’ or
-‘<samp>--wgt_var</samp>’) switch.
-<a name="index-_002dw-wgt1_005b_002cwgt2_005d"></a>
-<a name="index-_002d_002dweight-wgt1_005b_002cwgt2_005d"></a>
-<a name="index-_002d_002dwgt_005fvar-wgt1_005b_002cwgt2_005d"></a>
-If only <var>wgt1</var> is specified then <var>wgt2</var> is automatically
-computed as <em><var>wgt2</var> = 1 - <var>wgt1</var></em>.
-Note that weights larger than 1<!-- /@w --> are allowed.
-Thus it is possible to specify <em><var>wgt1</var> = 2</em> and
-<em><var>wgt2</var> = -3</em>.
-One can use this functionality to multiply all the values in a given
-file by a constant.
-</p>
-<p>The second method of using <code>ncflint</code> is to specify the
-interpolation option with ‘<samp><span class="nolinebreak">-i</span></samp>’<!-- /@w --> (or with the ‘<samp>--ntp</samp>’ or
-‘<samp>--interpolate</samp>’ long options).
-This is the inverse of the first method in the following sense:
-When the user specifies the weights directly, <code>ncflint</code> has no
-work to do besides multiplying the input values by their respective
-weights and adding together the results to produce the output values.
-It makes sense to use this when the weights are known
-<em>a priori<!-- /@w --></em>.
-</p>
-<a name="index-arrival-value"></a>
-<p>Another class of problems has the <em>arrival value</em> (i.e., <var>val3</var>)
-of a particular variable <var>var</var> known <em>a priori<!-- /@w --></em>.
-In this case, the implied weights can always be inferred by examining
-the values of <var>var</var> in the input files.
-This results in one equation in two unknowns, <var>wgt1</var> and <var>wgt2</var>:
-<em><var>val3</var> = <var>wgt1</var>*<var>val1</var> + <var>wgt2</var>*<var>val2</var></em>
-.
-Unique determination of the weights requires imposing the additional
-constraint of normalization on the weights:
-<em><var>wgt1</var> + <var>wgt2</var> = 1</em>.
-Thus, to use the interpolation option, the user specifies <var>var</var>
-and <var>val3</var> with the ‘<samp>-i</samp>’ option.
-<code>ncflint</code> then computes <var>wgt1</var> and <var>wgt2</var>, and uses these
-weights on all variables to generate the output file.
-Although <var>var</var> may have any number of dimensions in the input
-files, it must represent a single, scalar value.
-<a name="index-degenerate-dimension-5"></a>
-Thus any dimensions associated with <var>var</var> must be <em>degenerate</em>,
-i.e., of size one.
-</p>
-<p>If neither ‘<samp>-i</samp>’ nor ‘<samp>-w</samp>’ is specified on the command line,
-<code>ncflint</code> defaults to weighting each input file equally in the
-output file.
-This is equivalent to specifying ‘<samp>-w 0.5</samp>’ or ‘<samp>-w 0.5,0.5</samp>’.
-Attempting to specify both ‘<samp>-i</samp>’ and ‘<samp>-w</samp>’ methods in the same
-command is an error.
-</p>
-<p><code>ncflint</code> does not interpolate variables of type <code>NC_CHAR</code>
-and <code>NC_STRING</code>.
-This behavior is hardcoded.
-</p>
-<p>By default <code>ncflint</code> interpolates or multiplies record
-coordinate variables (e.g., time is often stored as a record coordinate)
-not other coordinate variables (e.g., latitude and longitude).
-This is because <code>ncflint</code> is often used to time-interpolate
-between existing files, but is rarely used to spatially interpolate.
-Sometimes however, users wish to multiply entire files by a constant
-that does not multiply any coordinate variables.
-The ‘<samp>--fix_rec_crd</samp>’ switch was implemented for this purpose
-in <acronym>NCO</acronym> version 4.2.6 (March, 2013).
-It prevents <code>ncflint</code> from multiplying or interpolating any
-coordinate variables, including record coordinate variables.
-</p>
-<a name="index-missing-values-2"></a>
-<a name="index-_005fFillValue-3"></a>
-<p>Depending on your intuition, <code>ncflint</code> may treat missing values
-unexpectedly.
-Consider a point where the value in one input file, say <var>val1</var>,
-equals the missing value <var>mss_val_1</var> and, at the same point,
-the corresponding value in the other input file <var>val2</var> is not
-misssing (i.e., does not equal <var>mss_val_2</var>).
-There are three plausible answers, and this creates ambiguity.
-</p>
-<p>Option one<!-- /@w --> is to set <em><var>val3</var> = <var>mss_val_1</var></em>.
-The rationale is that <code>ncflint</code> is, at heart, an interpolator
-and interpolation involving a missing value is intrinsically undefined.
-<code>ncflint</code> currently implements this behavior since it is the
-most conservative and least likely to lead to misinterpretation.
-</p>
-<p>Option two<!-- /@w --> is to output the weighted valid data point, i.e.,
-<em><var>val3</var> = <var>wgt2</var>*<var>val2</var></em>
-.
-The rationale for this behavior is that interpolation is really a
-weighted average of known points, so <code>ncflint</code> should weight the
-valid point.
-</p>
-<p>Option three<!-- /@w --> is to return the <em>unweighted</em> valid point, i.e.,
-<em><var>val3</var> = <var>val2</var></em>.
-This behavior would appeal to those who use <code>ncflint</code> to
-estimate data using the closest available data.
-When a point is not bracketed by valid data on both sides, it is better
-to return the known datum than no datum at all.
-</p>
-<p>The current implementation uses the first approach, Option one<!-- /@w -->.
-If you have strong opinions on this matter, let us know, since we are
-willing to implement the other approaches as options if there is enough
-interest.
-</p>
-<a name="xmp_ncflint"></a> <!-- http://nco.sf.net/nco.html#xmp_ncflint --><p>EXAMPLES
-</p>
-<p>Although it has other uses, the interpolation feature was designed
-to interpolate <var>file_3</var> to a time between existing files.
-Consider input files <samp>85.nc</samp> and <samp>87.nc</samp> containing variables
-describing the state of a physical system at times <em><code>time</code> =
-85</em> and <em><code>time</code> = 87</em>.
-Assume each file contains its timestamp in the scalar variable
-<code>time</code>.
-Then, to linearly interpolate to a file <samp>86.nc</samp> which describes
-the state of the system at time at <code>time</code> = 86, we would use
-</p><div class="example">
-<pre class="example">ncflint -i time,86 85.nc 87.nc 86.nc
-</pre></div>
-
-<p>Say you have observational data covering January and April 1985 in two
-files named <samp>85_01.nc</samp> and <samp>85_04.nc</samp>, respectively.
-Then you can estimate the values for February and March by interpolating
-the existing data as follows.
-Combine <samp>85_01.nc</samp> and <samp>85_04.nc</samp> in a 2:1 ratio to make
-<samp>85_02.nc</samp>:
-</p><div class="example">
-<pre class="example">ncflint -w 0.667 85_01.nc 85_04.nc 85_02.nc
-ncflint -w 0.667,0.333 85_01.nc 85_04.nc 85_02.nc
-</pre></div>
-
-<p>Multiply <samp>85.nc</samp> by 3<!-- /@w --> and by -2<!-- /@w --> and add them
-together to make <samp>tst.nc</samp>:
-</p><div class="example">
-<pre class="example">ncflint -w 3,-2 85.nc 85.nc tst.nc
-</pre></div>
-<a name="index-null-operation"></a>
-<p>This is an example of a null operation, so <samp>tst.nc</samp> should be
-identical (within machine precision) to <samp>85.nc</samp>.
-</p>
-<a name="index-multiplication-2"></a>
-<a name="index-file-multiplication"></a>
-<a name="index-scaling-1"></a>
-<p>Multiply all the variables except the coordinate variables in the file
-<samp>emissions.nc</samp> by by 0.8<!-- /@w -->:
-</p><div class="example">
-<pre class="example">ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_emissions.nc
-</pre></div>
-<p>The use of ‘<samp>--fix_rec_crd</samp>’ ensures, e.g., that the <code>time</code>
-coordinate, if any, is not scaled (i.e., multiplied).
-</p>
-<p>Add <samp>85.nc</samp> to <samp>86.nc</samp> to obtain <samp>85p86.nc</samp>,
-then subtract <samp>86.nc</samp> from <samp>85.nc</samp> to obtain <samp>85m86.nc</samp>
-</p><div class="example">
-<pre class="example">ncflint -w 1,1 85.nc 86.nc 85p86.nc
-ncflint -w 1,-1 85.nc 86.nc 85m86.nc
-ncdiff 85.nc 86.nc 85m86.nc
-</pre></div>
-<p>Thus <code>ncflint</code> can be used to mimic some <code>ncbo</code>
-operations.
-<a name="index-broadcasting-variables-3"></a>
-However this is not a good idea in practice because <code>ncflint</code>
-does not broadcast (see <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a>) conforming
-variables during arithmetic.
-Thus the final two commands would produce identical results except that
-<code>ncflint</code> would fail if any variables needed to be broadcast.
-</p>
-<a name="index-units-5"></a>
-<p>Rescale the dimensional units of the surface pressure <code>prs_sfc</code>
-from Pascals to hectopascals (millibars)
-</p><div class="example">
-<pre class="example">ncflint -C -v prs_sfc -w 0.01,0.0 in.nc in.nc out.nc
-ncatted -a units,prs_sfc,o,c,millibar out.nc
-</pre></div>
-
-<a name="ncks"></a> <!-- http://nco.sf.net/nco.html#ncks --><hr>
-<a name="ncks-netCDF-Kitchen-Sink"></a>
-<div class="header">
-<p>
-Next: <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly" accesskey="n" rel="next">ncpdq netCDF Permute Dimensions Quickly</a>, Previous: <a href="#ncflint-netCDF-File-Interpolator" accesskey="p" rel="prev">ncflint netCDF File Interpolator</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncks-netCDF-Kitchen-Sink-1"></a>
-<h3 class="section">4.7 <code>ncks</code> netCDF Kitchen Sink</h3>
-<a name="index-kitchen-sink"></a>
-<a name="index-printing-files-contents"></a>
-<a name="index-printing-variables"></a>
-<a name="index-ncks-3"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncks [-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b <var>binary-file</var>] [-C] [-c] [--cdl]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F] [--fix_rec_dmn <var>dim</var>]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [--grp_xtr_var_xcl] [-H] [-h] [--hdn] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [-m] [--mk_rec_dmn <var>dim</var>] [--md5_digest]
-[--no_blank] [--no_tmp_fl] [-O] [-o <var>output-file</var>] [-P] [-p <var>path</var>] [--ppc ...]
-[-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s <var>format</var>]
-[-u] [--unn] [-V] [-v <var>var</var>[,…]] [-X ...] [-x] [--xml]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<a name="index-ncextr"></a>
-<p>The nickname “kitchen sink” is a catch-all because <code>ncks</code>
-combines most features of <code>ncdump</code> and <code>nccopy</code> with
-extra features to extract, hyperslab, multi-slab, sub-set, and translate
-into one versatile utility.
-<code>ncks</code> extracts (a subset of the) data from <var>input-file</var> and
-and writes (or pastes) it in netCDF format to <var>output-file</var>, and
-optionally writes it in flat binary format to <samp>binary-file</samp>, and
-optionally prints it to screen.
-</p>
-<p><code>ncks</code> prints netCDF input data in <acronym>ASCII</acronym>,
-<acronym>CDL</acronym>, or <acronym>NcML</acronym> text formats <code>stdout</code>, like (an
-extended version of) <code>ncdump</code>.
-By default <code>ncks</code> prints data in a tabular format intended to be
-easy to search for the data you want, one datum per screen line, with
-all dimension subscripts and coordinate values (if any) preceding the
-datum.
-Option ‘<samp>-s</samp>’ (or long options ‘<samp>--sng_fmt</samp>’ and ‘<samp>--string</samp>’)
-permits the user to format data using C-style format strings, while
-option ‘<samp>--cdl</samp>’ outputs <acronym>CDL</acronym> and option ‘<samp>--xml</samp>’
-outputs <acronym>NcML</acronym>.
-<code>ncks</code> exposes many flexible controls over printed output,
-including <acronym>CDL</acronym> and <acronym>NcML</acronym>.
-</p>
-<p>Options ‘<samp>-5</samp>’, ‘<samp>-a</samp>’, ‘<samp>--cdl</samp>’, ‘<samp>-F</samp>’ , ‘<samp>-H</samp>’,
-‘<samp>--hdn</samp>’, ‘<samp>-M</samp>’, ‘<samp>-m</samp>’, ‘<samp>-P</samp>’, ‘<samp>-Q</samp>’, ‘<samp>-q</samp>’,
-‘<samp>-s</samp>’, ‘<samp>-u</samp>’, ‘<samp>-V</samp>’, and ‘<samp>--xml</samp>’ (and their long option
-counterparts) control the formatted appearance of the data.
-</p>
-<a name="index-global-attributes-6"></a>
-<a name="index-attributes_002c-global-6"></a>
-<p><code>ncks</code> extracts (and optionally creates a new netCDF file
-comprised of) only selected variables from the input file
-(similar to the old <code>ncextr</code> specification).
-Only variables and coordinates may be specifically included or
-excluded—all global attributes and any attribute associated with an
-extracted variable are copied to the screen and/or output netCDF file.
-Options ‘<samp>-c</samp>’, ‘<samp>-C</samp>’, ‘<samp>-v</samp>’, and ‘<samp>-x</samp>’ (and their long
-option synonyms) control which variables are extracted.
-</p>
-<p><code>ncks</code> extracts hyperslabs from the specified variables
-(<code>ncks</code> implements the original <code>nccut</code> specification).
-Option ‘<samp>-d</samp>’ controls the hyperslab specification.
-Input dimensions that are not associated with any output variable do
-not appear in the output netCDF.
-This feature removes superfluous dimensions from netCDF files.
-</p>
-<a name="index-appending-data-1"></a>
-<a name="index-merging-files-1"></a>
-<p><code>ncks</code> will append variables and attributes from the
-<var>input-file</var> to <var>output-file</var> if <var>output-file</var> is a
-pre-existing netCDF file whose relevant dimensions conform to dimension
-sizes of <var>input-file</var>.
-The append features of <code>ncks</code> are intended to provide a
-rudimentary means of adding data from one netCDF file to another,
-conforming, netCDF file.
-If naming conflicts exist between the two files, data in
-<var>output-file</var> is usually overwritten by the corresponding data from
-<var>input-file</var>.
-Thus, when appending, the user should backup <var>output-file</var> in case
-valuable data are inadvertantly overwritten.
-</p>
-<p>If <var>output-file</var> exists, the user will be queried whether to
-<em>overwrite</em>, <em>append</em>, or <em>exit</em> the <code>ncks</code> call
-completely.
-Choosing <em>overwrite</em> destroys the existing <var>output-file</var> and
-create an entirely new one from the output of the <code>ncks</code> call.
-Append has differing effects depending on the uniqueness of the
-variables and attributes output by <code>ncks</code>: If a variable or
-attribute extracted from <var>input-file</var> does not have a name conflict
-with the members of <var>output-file</var> then it will be added to
-<var>output-file</var> without overwriting any of the existing contents of
-<var>output-file</var>.
-In this case the relevant dimensions must agree (conform) between the
-two files; new dimensions are created in <var>output-file</var> as required.
-<a name="index-global-attributes-7"></a>
-<a name="index-attributes_002c-global-7"></a>
-When a name conflict occurs, a global attribute from <var>input-file</var>
-will overwrite the corresponding global attribute from
-<var>output-file</var>.
-If the name conflict occurs for a non-record variable, then the
-dimensions and type of the variable (and of its coordinate dimensions,
-if any) must agree (conform) in both files.
-Then the variable values (and any coordinate dimension values)
-from <var>input-file</var> will overwrite the corresponding variable values
-(and coordinate dimension values, if any) in <var>output-file</var>
-<a name="DOCF66" href="#FOOT66"><sup>66</sup></a>.
-</p>
-<p>Since there can only be one record dimension in a file, the record
-dimension must have the same name (though not necessarily the same size) in
-both files if a record dimension variable is to be appended.
-If the record dimensions are of differing sizes, the record dimension of
-<var>output-file</var> will become the greater of the two record dimension
-sizes, the record variable from <var>input-file</var> will overwrite any
-counterpart in <var>output-file</var> and fill values will be written to any
-gaps left in the rest of the record variables (I think).
-In all cases variable attributes in <var>output-file</var> are superseded by
-attributes of the same name from <var>input-file</var>, and left alone if
-there is no name conflict.
-</p>
-<p>Some users may wish to avoid interactive <code>ncks</code> queries about
-whether to overwrite existing data.
-For example, batch scripts will fail if <code>ncks</code> does not receive
-responses to its queries.
-Options ‘<samp>-O</samp>’ and ‘<samp>-A</samp>’ are available to force overwriting
-existing files and variables, respectively.
-</p>
-<a name="Options-specific-to-ncks"></a>
-<h4 class="unnumberedsubsec">Options specific to <code>ncks</code></h4>
-
-<p>The following summarizes features unique to <code>ncks</code>.
-Features common to many operators are described in
-<a href="#Shared-features">Shared features</a>.
-</p>
-<dl compact="compact">
-<dd>
-<a name="-5"></a> <!-- http://nco.sf.net/nco.html#-5 -->
-<a name="5"></a> <!-- http://nco.sf.net/nco.html#5 --><a name="index-_002d5-1"></a>
-</dd>
-<dt>‘<samp>-5</samp>’</dt>
-<dd><p>Print data to screen alphabetically by group, and alphabetically by
-variable within each group.
-This ordering here is used by default in <acronym>CDL</acronym>-mode printing,
-and may be selected for traditional mode printing with ‘<samp>-5</samp>’
-(The switch for invocation may change to something more descriptive in
-the future).
-</p>
-<a name="abc"></a> <!-- http://nco.sf.net/nco.html#abc -->
-<a name="alphabetize"></a> <!-- http://nco.sf.net/nco.html#alphabetize --><a name="index-alphabetization"></a>
-<a name="index-sort-alphabetically"></a>
-<a name="index-_002da"></a>
-<a name="index-_002d_002dabc"></a>
-<a name="index-_002d_002dalphabetize"></a>
-</dd>
-<dt>‘<samp>-a</samp>’</dt>
-<dd><p>Do not alphabetize extracted fields.
-By default, the specified output variables are extracted, printed, and
-written to disk in alphabetical order.
-This tends to make long output lists easier to search for particular
-variables.
-Specifying <code>-a</code> results in the variables being extracted, printed,
-and written to disk in the order in which they were saved in the input
-file.
-Thus <code>-a</code> retains the original ordering of the variables.
-Also ‘<samp>--abc</samp>’ and ‘<samp>--alphabetize</samp>’.
-</p>
-<a name="bnr"></a> <!-- http://nco.sf.net/nco.html#bnr -->
-<a name="binary"></a> <!-- http://nco.sf.net/nco.html#binary --><a name="index-binary-format"></a>
-<a name="index-_002db-2"></a>
-<a name="index-_002d_002dfl_005fbnr"></a>
-<a name="index-_002d_002dbnr"></a>
-<a name="index-_002d_002dbinary"></a>
-</dd>
-<dt>‘<samp>-b <samp>file</samp></samp>’</dt>
-<dd><p>Activate native machine binary output writing to binary file
-<samp>file</samp>.
-Also ‘<samp>--fl_bnr</samp>’ and ‘<samp>--binary-file</samp>’.
-Writing packed variables in binary format is not supported.
-Metadata is never output to the binary file.
-Examine the netCDF output file to see the variables in the binary file.
-Use the ‘<samp>-C</samp>’ switch, if necessary, to avoid wanting unwanted
-coordinates to the binary file:
-</p><div class="example">
-<pre class="example">% ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
-% ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
-200
-% ls -l ~/bnr.dat
-% ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
-% ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
-40
-</pre></div>
-
-<a name="dmn_fix_mk"></a> <!-- http://nco.sf.net/nco.html#dmn_fix_mk -->
-<a name="fix_rec_dmn"></a> <!-- http://nco.sf.net/nco.html#fix_rec_dmn --><a name="index-record-dimension-7"></a>
-<a name="index-fixed-dimension-2"></a>
-<a name="index-_002d_002dfix_005frec_005fdmn-dim"></a>
-<a name="index-_002d_002dno_005frec_005fdmn-dim"></a>
-</dd>
-<dt>‘<samp>--fix_rec_dmn</samp>’</dt>
-<dd><p>Change record dimension <var>dim</var> in the input file into a fixed
-dimension in the output file.
-Also ‘<samp>--no_rec_dmn</samp>’.
-Before <acronym>NCO</acronym> version 4.2.5 (January, 2013), the syntax for
-<code>--fix_rec_dmn</code> did not permit or require the specification of
-the dimension name <var>dim</var>.
-This is because the feature only worked on netCDF3 files, which support
-only one record dimension, so specifying its name was not necessary.
-netCDF4 files allow an arbitrary number of record dimensions, so the
-user must specify which record dimension to fix.
-The decision was made that starting with <acronym>NCO</acronym> version 4.2.5
-(January, 2013), it is always required to specify the dimension name to
-fix regardless of the netCDF file type.
-This keeps the code simple, and is symmetric with the syntax for
-<code>--mk_rec_dmn</code>, described next.
-</p>
-<p>As of <acronym>NCO</acronym> version 4.4.0 (January, 2014), the argument
-<code>all</code> may be given to ‘<samp>--fix_rec_dmn</samp>’ to convert <em>all</em>
-record dimensions to fixed dimensions in the output file.
-Previously, ‘<samp>--fix_rec_dmn</samp>’ only allowed one option, the name of a
-single record dimension to be fixed.
-Now it is simple to simultaneously fix all record dimensions.
-This is useful (and nearly mandatory) when flattening netCDF4 files that
-have multiple record dimensions per group into netCDF3 files (which are
-limited to at most one record dimension) (see <a href="#Group-Path-Editing">Group Path Editing</a>).
-</p>
-<a name="hdn"></a> <!-- http://nco.sf.net/nco.html#hdn -->
-<a name="hidden"></a> <!-- http://nco.sf.net/nco.html#hidden --><a name="index-hidden-attributes"></a>
-<a name="index-special-attributes"></a>
-<a name="index-_002d_002dhdn"></a>
-<a name="index-_002d_002dhidden"></a>
-<a name="index-_005fSOURCE_005fFORMAT"></a>
-<a name="index-_005fFormat"></a>
-<a name="index-_005fDeflateLevel"></a>
-<a name="index-_005fShuffle"></a>
-<a name="index-_005fStorage"></a>
-<a name="index-_005fChunkSizes"></a>
-<a name="index-_005fEndianness"></a>
-<a name="index-_005fFletcher32"></a>
-<a name="index-_005fNOFILL"></a>
-<p>As of <acronym>NCO</acronym> version 4.4.0 (January, 2014), the ‘<samp>--hdn</samp>’
-or ‘<samp>--hidden</samp>’ options print hidden (aka special) attributes.
-This is equivalent to ‘<samp>ncdump -s</samp>’.
-Hidden attributes include: <code>_Format</code>, <code>_DeflateLevel</code>,
-<code>_Shuffle</code>, <code>_Storage</code>, <code>_ChunkSizes</code>,
-<code>_Endianness</code>, <code>_Fletcher32</code>, and <code>_NOFILL</code>.
-Previously <code>ncks</code> ignored all these attributes in
-<acronym>CDL</acronym>/<acronym>XML</acronym> modes.
-Now it prints these attributes as appropriate.
-As of <acronym>NCO</acronym> version 4.4.6 (September, 2014), ‘<samp>--hdn</samp>’
-also prints the extended file format (i.e., the format of the file
-or server supplying the data) as <code>_SOURCE_FORMAT</code>.
-Users are referred to the
-<a href="http://www.unidata.ucar.edu/software/netcdf/docs">Unidata netCDF Documentation</a>,
-or the man pages for <code>ncgen</code> or <code>ncdump</code>, for
-detailed descriptions of the meanings of these attributes.
-</p>
-<a name="cdl"></a> <!-- http://nco.sf.net/nco.html#cdl -->
-<a name="hdp"></a> <!-- http://nco.sf.net/nco.html#hdp -->
-<a name="hncgen"></a> <!-- http://nco.sf.net/nco.html#hncgen -->
-<a name="ncgen-hdf"></a> <!-- http://nco.sf.net/nco.html#ncgen-hdf --><a name="index-hdp"></a>
-<a name="index-ncgen"></a>
-<a name="index-ncgen_002dhdf"></a>
-<a name="index-hncgen"></a>
-<a name="index-ncdump-1"></a>
-<a name="index-_002d_002dcdl"></a>
-<a name="index-CDL"></a>
-<a name="index-HDF-2"></a>
-<a name="index-HDF4-1"></a>
-</dd>
-<dt>‘<samp>--cdl</samp>’</dt>
-<dd><p>As of <acronym>NCO</acronym> version 4.3.3 (July, 2013), <code>ncks</code> can
-print extracted data and metadata to screen (i.e., <code>stdout</code>) as
-valid <acronym>CDL</acronym> (network Common data form Description Language).
-<acronym>CDL</acronym> is the human-readable “lingua franca” of netCDF ingested by
-<code>ncgen</code> and excreted by <code>ncdump</code>.
-Compare <code>ncks</code> “traditional” with <acronym>CDL</acronym> printing:
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncks -v one ~/nco/data/in.nc
-one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
-one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
-one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
-one = 1
-
-zender at roulee:~$ ncks --cdl -v one ~/nco/data/in.nc
-netcdf in {
-
- variables:
- float one ;
- one:long_name = "one" ;
-
- data:
- one = 1 ;
-
-} // group /
-</pre></div>
-<p><code>ncgen</code> converts <acronym>CDL</acronym>-mode output into a netCDF file:
-</p><div class="example">
-<pre class="example">ncks --cdl -v one ~/nco/data/in.nc > ~/in.cdl
-ncgen -k netCDF-4 -b -o ~/in.nc ~/in.cdl
-ncks -v one ~/in.nc
-</pre></div>
-<p>The <acronym>HDF</acronym> version of <code>ncgen</code>, often named
-<code>hncgen</code> or <code>ncgen-hdf</code>, converts netCDF3 <acronym>CDL</acronym>
-into an <acronym>HDF</acronym> file:
-</p><div class="example">
-<pre class="example">/usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local builds)
-/usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)
-/usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Debian packages?)
-hdp dumpsds ~/in.hdf # ncdump/h5dump-equivalent for HDF4
-</pre></div>
-<p>Note that <acronym>HDF4</acronym> does not support netCDF-style groups, so the
-above commands fail when the input file contains groups.
-Only netCDF4 and <acronym>HDF5</acronym> support groups.
-In our experience the <acronym>HDF</acronym> <code>ncgen</code> command, by whatever
-name installed, is not robust and can fail on valid netCDF3
-<acronym>CDL</acronym>.
-</p>
-<a name="dmn_rec_mk"></a> <!-- http://nco.sf.net/nco.html#dmn_rec_mk -->
-<a name="mk_rec_dmn"></a> <!-- http://nco.sf.net/nco.html#mk_rec_dmn --><a name="index-record-dimension-8"></a>
-<a name="index-fixed-dimension-3"></a>
-<a name="index-fix-record-dimension-2"></a>
-<a name="index-_002d_002dmk_005frec_005fdmn-dim-1"></a>
-</dd>
-<dt>‘<samp>--mk_rec_dmn <var>dim</var></samp>’</dt>
-<dd><p>Change existing dimension <var>dim</var> to a record dimension in the output file.
-This is the most straightforward way of changing a dimension to a/the
-record dimension, and works fine in most cases.
-See <a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a> and
-<a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a> for other methods of
-changing variable dimensionality, including the record dimension.
-</p>
-<a name="H"></a> <!-- http://nco.sf.net/nco.html#H -->
-<a name="data"></a> <!-- http://nco.sf.net/nco.html#data --><a name="index-_002dH-1"></a>
-<a name="index-_002d_002ddata"></a>
-<a name="index-_002d_002dhieronymus"></a>
-</dd>
-<dt>‘<samp>-H</samp>’</dt>
-<dd><p>Turn-on printing to screen or turn-off copying data (not metadata).
-Also activated using ‘<samp>--print</samp>’ or ‘<samp>--prn</samp>’.
-By default <code>ncks</code> prints all metadata and data to screen if
-no netCDF output file is specified.
-Use ‘<samp>-H</samp>’ to print data to screen if a netCDF output is specified,
-or to restrict printing to data (no metadata) when no netCDF output is
-specified.
-Also use ‘<samp>-H</samp>’ to turn-off copying data (not metadata) to an output
-file.
-Unless otherwise specified (with <code>-s</code>), each element of the data
-hyperslab prints on a separate line containing the names, indices,
-and, values, if any, of all of the variables dimensions.
-The dimension and variable indices refer to the location of the
-corresponding data element with respect to the variable as stored on
-disk (i.e., not the hyperslab).
-</p><div class="example">
-<pre class="example">% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-</pre></div>
-<p>Printing the same variable with the ‘<samp>-F</samp>’ option shows the same
-variable indexed with Fortran conventions
-</p><div class="example">
-<pre class="example">% ncks -F -C -v three_dmn_var in.nc
-lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
-lon(2)=90 lev(1)=100 lat(1)=-90 three_dmn_var(2)=1
-lon(3)=180 lev(1)=100 lat(1)=-90 three_dmn_var(3)=2
-...
-</pre></div>
-<p>Printing a hyperslab does not affect the variable or dimension indices
-since these indices are relative to the full variable (as stored in the
-input file), and the input file has not changed.
-However, if the hyperslab is saved to an output file and those values
-are printed, the indices will change:
-</p><div class="example">
-<pre class="example">% ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc
-...
-lat[1]=90 lev[2]=1000 lon[0]=0 three_dmn_var[20]=20
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lat[0]=90 lev[0]=1000 lon[0]=0 three_dmn_var[0]=20
-lat[0]=90 lev[0]=1000 lon[1]=90 three_dmn_var[1]=21
-lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
-lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
-</pre></div>
-
-<a name="Metadata"></a> <!-- http://nco.sf.net/nco.html#Metadata -->
-<a name="M"></a> <!-- http://nco.sf.net/nco.html#M --><a name="index-_002dM-2"></a>
-<a name="index-_002d_002dMtd"></a>
-<a name="index-_002d_002dMetadata"></a>
-<a name="index-metadata_002c-global-1"></a>
-</dd>
-<dt>‘<samp>-M</samp>’</dt>
-<dd><p>Turn-on printing to screen or turn-off copying global and group metadata.
-This includes file summary information and global and group attributes.
-Also ‘<samp>--Mtd</samp>’ and ‘<samp>--Metadata</samp>’.
-By default <code>ncks</code> prints global metadata to screen if no netCDF
-output file and no variable extraction list is specified (with ‘<samp>-v</samp>’).
-Use ‘<samp>-M</samp>’ to print global metadata to screen if a netCDF output is
-specified, or if a variable extraction list is specified (with ‘<samp>-v</samp>’).
-Use ‘<samp>-M</samp>’ to turn-off copying of global and group metadata when
-copying, subsetting, or appending to an output file.
-</p>
-<a name="prn_tbl"></a> <!-- http://nco.sf.net/nco.html#prn_tbl --><p>The various combinations of printing switches can be confusing.
-In an attempt to anticipate what most users want to do, <code>ncks</code>
-uses context-sensitive defaults for printing.
-Our goal is to minimize the use of switches required to accomplish the
-common operations.
-We assume that users creating a new file or overwriting (e.g., with
-‘<samp>-O</samp>’) an existing file usually wish to copy all global and
-variable-specific attributes to the new file.
-In contrast, we assume that users appending (e.g., with ‘<samp>-A</samp>’ an
-explicit variable list from one file to another usually wish to copy
-only the variable-specific attributes to the output file.
-The switches ‘<samp>-H</samp>’, ‘<samp>-M</samp>’, and ‘<samp>-m</samp>’ switches are
-implemented as toggles which reverse the default behavior.
-The most confusing aspect of this is that ‘<samp>-M</samp>’ inhibits copying
-global metadata in overwrite mode and causes copying of global
-metadata in append mode.
-</p><div class="example">
-<pre class="example">ncks in.nc # Print VAs and GAs
-ncks -v one in.nc # Print VAs not GAs
-ncks -M -v one in.nc # Print GAs only
-ncks -m -v one in.nc # Print VAs only
-ncks -M -m -v one in.nc # Print VAs and GAs
-ncks -O in.nc out.nc # Copy VAs and GAs
-ncks -O -v one in.nc out.nc # Copy VAs and GAs
-ncks -O -M -v one in.nc out.nc # Copy VAs not GAs
-ncks -O -m -v one in.nc out.nc # Copy GAs not VAs
-ncks -O -M -m -v one in.nc out.nc # Copy only data (no atts)
-ncks -A in.nc out.nc # Append VAs and GAs
-ncks -A -v one in.nc out.nc # Append VAs not GAs
-ncks -A -M -v one in.nc out.nc # Append VAs and GAs
-ncks -A -m -v one in.nc out.nc # Append only data (no atts)
-ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
-</pre></div>
-<p>where <code>VAs</code> and <code>GAs</code> denote variable and group/global
-attributes, respectively.
-</p>
-<a name="m"></a> <!-- http://nco.sf.net/nco.html#m -->
-<a name="mtd"></a> <!-- http://nco.sf.net/nco.html#mtd -->
-<a name="metadata"></a> <!-- http://nco.sf.net/nco.html#metadata --><a name="index-ncdump-2"></a>
-<a name="index-_002dm"></a>
-<a name="index-_002d_002dmtd"></a>
-<a name="index-_002d_002dmetadata"></a>
-<a name="index-metadata"></a>
-</dd>
-<dt>‘<samp>-m</samp>’</dt>
-<dd><p>Turn-on printing to screen or turn-off copying variable metadata.
-Using ‘<samp>-m</samp>’ will print variable metadata to screen (similar to
-<kbd>ncdump -h</kbd>).
-This displays all metadata pertaining to each variable, one variable
-at a time.
-<a name="index-chunking-2"></a>
-<a name="index-compression-1"></a>
-<a name="index-deflation-2"></a>
-This includes information on the storage properties of the variable,
-such as whether it employs chunking, compression, or packing.
-Also activated using ‘<samp>--mtd</samp>’ and ‘<samp>--metadata</samp>’.
-The <code>ncks</code> default behavior is to print variable metadata to
-screen if no netCDF output file is specified.
-Use ‘<samp>-m</samp>’ to print variable metadata to screen if a netCDF output is
-specified.
-Also use ‘<samp>-m</samp>’ to turn-off copying of variable metadata to an output
-file.
-</p>
-<a name="no_blank"></a> <!-- http://nco.sf.net/nco.html#no_blank -->
-<a name="noblank"></a> <!-- http://nco.sf.net/nco.html#noblank -->
-<a name="no-blank"></a> <!-- http://nco.sf.net/nco.html#no-blank --><a name="index-_002d_002dno_005fblank"></a>
-<a name="index-_002d_002dnoblank"></a>
-<a name="index-_002d_002dno_002dblank"></a>
-<a name="index-blank"></a>
-<a name="index-missing-values-3"></a>
-</dd>
-<dt>‘<samp>--no_blank</samp>’</dt>
-<dd><p>Print numeric representation of missing values.
-As of <acronym>NCO</acronym>
-As of <acronym>NCO</acronym> version 4.2.2 (October, 2012), <acronym>NCO</acronym> prints
-missing values as blanks (i.e., the underscore character ‘<samp>_</samp>’) by default.
-To enable the old behavior of printing the numeric representation of
-missing values (e.g., <code>1.0e36</code>), use the ‘<samp>--no_blank</samp>’ switch.
-Also activated using ‘<samp>--noblank</samp>’ or ‘<samp>--no-blank</samp>’.
-</p>
-<a name="P"></a> <!-- http://nco.sf.net/nco.html#P -->
-<a name="prn"></a> <!-- http://nco.sf.net/nco.html#prn --><a name="index-_002dP"></a>
-<a name="index-_002d_002dprint"></a>
-<a name="index-_002d_002dprn"></a>
-</dd>
-<dt>‘<samp>-P</samp>’</dt>
-<dd><p>Print data, metadata, and units to screen.
-The ‘<samp>-P</samp>’ switch is a convenience abbreviation for
-‘<samp>-C -H -M -m -u</samp>’.
-Also activated using ‘<samp>--print</samp>’ or ‘<samp>--prn</samp>’.
-This set of switches is useful for exploring file contents.
-</p>
-<a name="Q"></a> <!-- http://nco.sf.net/nco.html#Q -->
-<a name="quiet"></a> <!-- http://nco.sf.net/nco.html#quiet --><a name="index-_002dQ"></a>
-<a name="index-_002d_002dquiet"></a>
-</dd>
-<dt>‘<samp>-Q</samp>’</dt>
-<dd><p>Print quietly, meaning omit dimension names, indices, and coordinate
-values when printing arrays.
-Variable (not dimension) indices are printed.
-Variable names appear flush left in the output:
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-three_dmn_rec_var[0]=1
-...
-</pre></div>
-<p>This helps locate specific variables in lists with many variables and
-different dimensions.
-See also the ‘<samp>-V</samp>’ option, which omits all names and indices and
-prints only variable values.
-</p>
-<a name="q"></a> <!-- http://nco.sf.net/nco.html#q -->
-<a name="quench"></a> <!-- http://nco.sf.net/nco.html#quench --><a name="index-_002dq"></a>
-<a name="index-_002d_002dquench"></a>
-<a name="index-quench"></a>
-</dd>
-<dt>‘<samp>-q</samp>’</dt>
-<dd><p>Quench (turn-off) all printing to screen.
-This overrides the setting of all print-related switches, equivalent to
-<kbd>-H -M -m</kbd> when in single-file printing mode.
-When invoked with <code>-R</code> (see <a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a>), <code>ncks</code>
-automatically sets <code>-q</code>.
-This allows <code>ncks</code> to retrieve remote files without
-automatically trying to print them.
-Also ‘<samp>--quench</samp>’.
-</p>
-<a name="rad"></a> <!-- http://nco.sf.net/nco.html#rad -->
-<a name="orphan"></a> <!-- http://nco.sf.net/nco.html#orphan -->
-<a name="rph_dmn"></a> <!-- http://nco.sf.net/nco.html#rph_dmn --><a name="index-_002d_002drad"></a>
-<a name="index-orphan-dimensions"></a>
-<a name="index-_002d_002dretain_005fall_005fdimensions"></a>
-<a name="index-_002d_002dorphan_005fdimensions"></a>
-<a name="index-_002d_002drph_005fdmn"></a>
-</dd>
-<dt>‘<samp>--rad</samp>’</dt>
-<dd><p>Retain all dimensions.
-When invoked with <code>--rad</code> (Retain All Dimensions),
-<code>ncks</code> copies each dimension in the input file to the output
-file, regardless of whether the dimension is utilized by any variables.
-Normally <code>ncks</code> discards “orphan dimensions”, i.e., dimensions
-not referenced by any variables.
-This switch allows users to keep non-referenced dimensions in the workflow.
-When invoked in printing mode, causes orphaned dimensions to be printed
-(they are not printed by default).
-Also ‘<samp>--retain_all_dimensions</samp>’, ‘<samp>--orphan_dimensions</samp>’, and
-‘<samp>--rph_dmn</samp>’.
-</p>
-<a name="s"></a> <!-- http://nco.sf.net/nco.html#s -->
-<a name="sng_fmt"></a> <!-- http://nco.sf.net/nco.html#sng_fmt -->
-<a name="string"></a> <!-- http://nco.sf.net/nco.html#string --><a name="index-_002ds"></a>
-<a name="index-_002d_002dstring"></a>
-<a name="index-_002d_002dsng_005ffmt"></a>
-<a name="index-printf_0028_0029-1"></a>
-<a name="index-C-language-7"></a>
-</dd>
-<dt>‘<samp>-s <var>format</var></samp>’</dt>
-<dd><p>String format for text output.
-Accepts C language<!-- /@w --> escape sequences and <code>printf()</code> formats.
-Also ‘<samp>--string</samp>’ and ‘<samp>--sng_fmt</samp>’.
-</p>
-<a name="ssh"></a> <!-- http://nco.sf.net/nco.html#ssh -->
-<a name="scr"></a> <!-- http://nco.sf.net/nco.html#scr -->
-<a name="secret"></a> <!-- http://nco.sf.net/nco.html#secret --><a name="index-_002d_002dssh"></a>
-<a name="index-_002d_002dscr"></a>
-<a name="index-_002d_002dsecret"></a>
-<a name="index-hidden-features"></a>
-</dd>
-<dt>‘<samp>--secret</samp>’</dt>
-<dd><p>Print summary of <code>ncks</code> hidden features.
-These hidden or secret features are used mainly by developers.
-They are not supported for general use and may change at any time.
-This demonstrates conclusively that I cannot keep a secret.
-Also ‘<samp>--ssh</samp>’ and ‘<samp>--scr</samp>’.
-</p>
-<a name="units"></a> <!-- http://nco.sf.net/nco.html#units -->
-<a name="u"></a> <!-- http://nco.sf.net/nco.html#u --><a name="index-_002du"></a>
-<a name="index-_002d_002dunits"></a>
-</dd>
-<dt>‘<samp>-u</samp>’</dt>
-<dd><p>Toggle the printing of a variable’s <code>units</code> attribute, if any,
-with its values.
-Also ‘<samp>--units</samp>’.
-</p>
-<a name="V"></a> <!-- http://nco.sf.net/nco.html#V -->
-<a name="var_val"></a> <!-- http://nco.sf.net/nco.html#var_val --><a name="index-_002dV"></a>
-<a name="index-_002d_002dvar_005fval"></a>
-<a name="index-_002d_002dno_005fdmn_005fvar_005fnm"></a>
-<a name="index-_002d_002dno_005fnm_005fprn"></a>
-</dd>
-<dt>‘<samp>-V</samp>’</dt>
-<dd><p>Print variable values only.
-Do not print variable and dimension names, indices, and coordinate
-values when printing arrays.
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-...
-</pre></div>
-<p>See also the ‘<samp>-Q</samp>’ option, which prints variable names and indices,
-but not dimension names, indices, or coordinate values when printing
-arrays.
-Using ‘<samp>-V</samp>’ is the same as specifying ‘<samp>-Q --no_nm_prn</samp>’.
-</p>
-<a name="xml"></a> <!-- http://nco.sf.net/nco.html#xml -->
-<a name="ncmnl"></a> <!-- http://nco.sf.net/nco.html#ncml --><a name="index-_002d_002dxml"></a>
-<a name="index-_002d_002dncml"></a>
-<a name="index-ncdump-3"></a>
-<a name="index-XML"></a>
-<a name="index-NcML"></a>
-</dd>
-<dt>‘<samp>--xml, --ncml</samp>’</dt>
-<dd><p>As of <acronym>NCO</acronym> version 4.3.3 (July, 2013), <code>ncks</code> can
-print extracted metadata to screen (i.e., <code>stdout</code>) as
-<acronym>XML</acronym> in <acronym>NcML</acronym>, the netCDF Markup Language.
-<code>ncks</code> supports for <acronym>XML</acronym> more completely than
-of ‘<samp>ncdump -x</samp>’.
-With <code>ncks</code> one can translate entire netCDF3 and netCDF4 files
-into <acronym>NcML</acronym>, including metadata and data, using all
-<acronym>NCO</acronym>’s subsetting and hyperslabbing capabilities.
-Compare <code>ncks</code> “traditional” with <acronym>XML</acronym> printing:
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncks -v one ~/nco/data/in.nc
-one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
-one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
-one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
-one = 1
-
-zender at roulee:~$ ncks --xml -v one ~/nco/data/in.nc
-<?xml version="1.0" encoding="UTF-8"?>
-<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2" location="/home/zender/nco/data/in.nc">
- <variable name="one" type="float" shape="">
- <attribute name="long_name" separator="*" value="one" />
- <values>1.</values>
- </variable>
-</netcdf>
-</pre></div>
-<p><acronym>XML</acronym>-mode prints variable metadata and, as of
-<acronym>NCO</acronym> version 4.3.7 (October, 2013), variable data and, as of
-<acronym>NCO</acronym> version 4.4.0 (January, 2014), hidden attributes.
-That <acronym>ncks</acronym> produces correct <acronym>NcML</acronym> translations of
-<acronym>CDM</acronym> files for all supported datatypes is verified by
-comparison to output from Unidata’s <code>toolsUI</code> Java program.
-Please let us know how to improve <acronym>XML</acronym>/<acronym>NcML</acronym>
-features.
-</p>
-<a name="index-_002d_002dxml_005fno_005flocation"></a>
-<a name="index-_002d_002dxml_005fspr_005fchr"></a>
-<a name="index-_002d_002dxml_005fspr_005fnmr"></a>
-<a name="index-separator"></a>
-<p><code>ncks</code> provides additional options to configure <acronym>NcML</acronym>
-output: ‘<samp>--xml_no_location</samp>’, ‘<samp>--xml_spr_chr</samp>’, and
-‘<samp>--xml_spr_nmr</samp>’.
-Every <acronym>NcML</acronym> configuration option automatically triggers
-<acronym>NcML</acronym> printing, so that specifying ‘<samp>--xml</samp>’ in addition
-to a configuration option is redundant and unnecessary.
-The ‘<samp>--xml_no_location</samp>’ switch prevents output of the
-<acronym>NcML</acronym> <code>location</code> element.
-By default the location element is printed with a value equal to the
-location of the input dataset, e.g.,
-<code>location="/home/zender/in.nc"</code>.
-The ‘<samp>--xml_spr_chr</samp>’ and ‘<samp>--xml_spr_nmr</samp>’ options customize
-the strings used as <acronym>NcML</acronym> separators for attributes and
-variables of character-type and numeric-type, respectively.
-Their default separators are <code>*</code> and “<code> </code>” (a space):
-</p><div class="example">
-<pre class="verbatim">zender at roulee:~$ ncks --xml -d time,0,3 -v two_dmn_rec_var_sng in.nc
-...
- <values separator="*">abc*bcd*cde*def</values>
- ...
- zender at roulee:~$ ncks --xml_spr_chr=', ' -v two_dmn_rec_var_sng in.nc
-...
-<values separator=", ">abc, bcd, cde, def, efg, fgh, ghi, hij, jkl, klm</values>
-...
-zender at roulee:~$ ncks --xml -v one_dmn_rec_var in.nc
-...
-<values>1 2 3 4 5 6 7 8 9 10</values>
-...
-zender at roulee:~$ ncks --xml_spr_nmr=', ' -v one_dmn_rec_var in.nc
-...
-<values separator=", ">1, 2, 3, 4, 5, 6, 7, 8, 9, 10</values>
-...
-</pre></div>
-<p>Separator elements for strings are a thorny issue.
-One must be sure that the separator element is not mistaken as a portion
-of the string.
-<acronym>NCO</acronym> attempts to produce valid <acronym>NcML</acronym> and supplies the
-‘<samp>--xml_spr_chr</samp>’ option to work around any difficulties.
-<acronym>NCO</acronym> performs precautionary checks with
-<code>strstr(<var>val</var>,<var>spr</var>)</code> to identify presence of the separator
-string (<var>spr</var>) in data (<var>val</var>) and, when it detects a match,
-automatically switches to a backup separator string (<code>*|*</code>).
-However limitations of <code>strstr()</code> may lead to false negatives
-when the separator string occurs in data beyond the first string in
-multi-dimensional <code>NC_CHAR</code> arrays.
-Hence, results may be ambiguous to NcML parsers.
-If problems arise, use ‘<samp>--xml_spr_chr</samp>’ to specify a multi-character
-separator that does not appear in the string array and that does not
-include an NcML formatting characters (e.g., commas, angles, quotes).
-</p></dd>
-</dl>
-
-<a name="ncattget"></a> <!-- http://nco.sf.net/nco.html#ncattget -->
-<a name="nclist"></a> <!-- http://nco.sf.net/nco.html#nclist -->
-<a name="ncdmnsz"></a> <!-- http://nco.sf.net/nco.html#ncdmnsz -->
-<a name="ncrecsz"></a> <!-- http://nco.sf.net/nco.html#ncrecsz -->
-<a name="ncmax"></a> <!-- http://nco.sf.net/nco.html#ncmax -->
-<a name="ncmdn"></a> <!-- http://nco.sf.net/nco.html#ncmdn -->
-<a name="ncavg"></a> <!-- http://nco.sf.net/nco.html#ncavg -->
-<a name="ncrng"></a> <!-- http://nco.sf.net/nco.html#ncrng -->
-<a name="ncunits"></a> <!-- http://nco.sf.net/nco.html#ncunits -->
-<a name="alias"></a> <!-- http://nco.sf.net/nco.html#alias -->
-<a name="filters"></a> <!-- http://nco.sf.net/nco.html#filters -->
-<a name="filter"></a> <!-- http://nco.sf.net/nco.html#filter -->
-<a name="flt"></a> <!-- http://nco.sf.net/nco.html#flt --><table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Filters-for-ncks" accesskey="1">Filters for <code>ncks</code></a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Filters-for-ncks"></a>
-<div class="header">
-<p>
-Previous: <a href="#ncks-netCDF-Kitchen-Sink" accesskey="p" rel="prev">ncks netCDF Kitchen Sink</a>, Up: <a href="#ncks-netCDF-Kitchen-Sink" accesskey="u" rel="up">ncks netCDF Kitchen Sink</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Filters-for-ncks-1"></a>
-<h4 class="subsection">4.7.1 Filters for <code>ncks</code></h4>
-<a name="index-UNIX-5"></a>
-<a name="index-ncattget-1"></a>
-<a name="index-ncavg"></a>
-<a name="index-ncdmnsz"></a>
-<a name="index-nclist"></a>
-<a name="index-ncmax"></a>
-<a name="index-ncmdn"></a>
-<a name="index-ncmin"></a>
-<a name="index-ncrecsz"></a>
-<a name="index-ncrng"></a>
-<a name="index-ncunits"></a>
-<a name="index-_002ebashrc"></a>
-<a name="index-filters"></a>
-<a name="index-alias-1"></a>
-<a name="index-shell-5"></a>
-<a name="index-Bash-shell-1"></a>
-<a name="index-Csh-shell"></a>
-<a name="index-Sh-shell"></a>
-<a name="index-bash-1"></a>
-<p>We encourage the use of standard <acronym>UNIX</acronym> pipes and filters to
-narrow the verbose output of <code>ncks</code> into more precise targets.
-For example, to obtain an uncluttered listing of the variables in a file
-try
-</p><div class="example">
-<pre class="example">ncks -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort
-</pre></div>
-<p>A Bash user could alias the previous filter to the shell command
-<code>nclist</code> as shown below.
-More complex examples could involve command line arguments.
-For example, a user may frequently be interested in obtaining the value
-of an attribute, e.g., for textual file examination or for passing to
-another shell command.
-Say the attribute is <code>purpose</code>, the variable is <code>z</code>, and the
-file is <code>in.nc</code>.
-In this example, <code>ncks -m -v z</code> is too verbose so a robust
-<code>grep</code> and <code>cut</code> filter is desirable, such as
-</p><div class="example">
-<pre class="example">ncks -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort
-</pre></div>
-<p>The filters are clearly too complex to remember on-the-fly so the entire
-procedure could be implemented as a shell command or function called,
-say, <code>ncattget</code>
-</p><div class="example">
-<pre class="verbatim">function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-</pre></div>
-<p>The shell <code>ncattget</code> is invoked with three arugments that are,
-in order, the names of the attribute, variable, and file to examine.
-Global attributes are indicated by using a variable name of <code>global</code>.
-This definition yields the following results
-</p><div class="example">
-<pre class="example">% ncattget purpose z in.nc
-Height stored with a monotonically increasing coordinate
-% ncattget Purpose Z in.nc
-Height stored with a monotonically increasing coordinate
-% ncattget history z in.nc
-% ncattget history global in.nc
-History global attribute.
-</pre></div>
-<p>Note that case sensitivity has been turned off for the variable and
-attribute names (and could be turned on by removing the ‘<samp>-i</samp>’ switch
-to <code>grep</code>).
-Furthermore, extended regular expressions may be used for both the
-variable and attribute names.
-The next two commands illustrate this by searching for the values
-of attribute <code>purpose</code> in all variables, and then for all
-attributes of the variable <code>z</code>:
-</p><div class="example">
-<pre class="example">% ncattget purpose .+ in.nc
-1-D latitude coordinate referred to by geodesic grid variables
-1-D longitude coordinate referred to by geodesic grid variables
-...
-% ncattget .+ Z in.nc
-Height
-Height stored with a monotonically increasing coordinate
-meter
-</pre></div>
-
-<p>Extended filters are best stored as shell commands if they are
-used frequently.
-Shell commands may be re-used when they are defined in shell
-configuration files.
-These files are usually named <samp>.bashrc</samp>, <samp>.cshrc</samp>, and
-<samp>.profile</samp> for the Bash, Csh, and Sh shells, respectively.
-</p><div class="example">
-<pre class="verbatim"># NB: Untested on Csh, Ksh, Sh, Zsh! Send us feedback!
-# Bash shell (/bin/bash) users place these in .bashrc
-# ncattget $att_nm $var_nm $fl_nm : What attributes does variable have?
-function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-# ncunits $att_val $fl_nm : Which variables have given units?
-function ncunits { ncks -M -m ${2} | grep -E -i " attribute [0-9]+: units.+ ${1}" | cut -f 1 -d ' ' | sort ; }
-# ncavg $var_nm $fl_nm : What is mean of variable?
-function ncavg { ncwa -y avg -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncavg $var_nm $fl_nm : What is mean of variable?
-function ncavg { ncap2 -O -C -v -s "foo=${1}.avg();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncdmnsz $dmn_nm $fl_nm : What is dimension size?
-function ncdmnsz { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-# nclist $fl_nm : What variables are in file?
-function nclist { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-# ncmax $var_nm $fl_nm : What is maximum of variable?
-function ncmax { ncwa -y max -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncmax $var_nm $fl_nm : What is maximum of variable?
-function ncmax { ncap2 -O -C -v -s "foo=${1}.max();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncmdn $var_nm $fl_nm : What is median of variable?
-function ncmdn { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncrng $var_nm $fl_nm : What is range of variable?
-function ncrng { ncap2 -O -C -v -s "foo_min=${1}.min();foo_max=${1}.max();print(foo_min,\"%f\");print(\" to \");print(foo_max,\"%f\")" ${2} ~/foo.nc ; }
-# ncmode $var_nm $fl_nm : What is mode of variable?
-function ncmode { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncrecsz $fl_nm : What is record dimension size?
-function ncrecsz { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-# Csh shell (/bin/csh) users place these in .cshrc
-ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-# Sh shell (/bin/sh) users place these in .profile
-ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-</pre></div>
-
-<a name="xmp_ncks"></a> <!-- http://nco.sf.net/nco.html#xmp_ncks --><p>EXAMPLES
-</p>
-<p>View all data in netCDF <samp>in.nc</samp>, printed with Fortran indexing
-conventions:
-</p><div class="example">
-<pre class="example">ncks -F in.nc
-</pre></div>
-
-<p>Copy the netCDF file <samp>in.nc</samp> to file <samp>out.nc</samp>.
-</p><div class="example">
-<pre class="example">ncks in.nc out.nc
-</pre></div>
-<p>Now the file <samp>out.nc</samp> contains all the data from <samp>in.nc</samp>.
-There are, however, two differences between <samp>in.nc</samp> and
-<samp>out.nc</samp>.
-<a name="index-history-5"></a>
-First, the <code>history</code> global attribute (see <a href="#History-Attribute">History Attribute</a>)
-will contain the command used to create <samp>out.nc</samp>.
-<a name="index-alphabetize-output"></a>
-<a name="index-sort-alphabetically-1"></a>
-<a name="index-_002da-1"></a>
-Second, the variables in <samp>out.nc</samp> will be defined in alphabetical
-order.
-Of course the internal storage of variable in a netCDF file should be
-transparent to the user, but there are cases when alphabetizing a file
-is useful (see description of <code>-a</code> switch).
-</p>
-<a name="xmp_att_glb_cpy"></a> <!-- http://nco.sf.net/nco.html#xmp_att_glb_cpy --><a name="index-global-attributes-8"></a>
-<a name="index-attributes_002c-global-8"></a>
-<a name="index-subsetting-3"></a>
-<a name="index-exclusion-1"></a>
-<a name="index-extraction-1"></a>
-<a name="index-_002dv-var-1"></a>
-<a name="index-_002d_002dvariable-var-1"></a>
-<a name="index-_002dx-1"></a>
-<a name="index-_002d_002dexclude-1"></a>
-<a name="index-_002d_002dxcl-1"></a>
-<p>Copy all global attributes (and no variables) from <samp>in.nc</samp> to
-<samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncks -A -x ~/nco/data/in.nc ~/out.nc
-</pre></div>
-<p>The ‘<samp>-x</samp>’ switch tells <acronym>NCO</acronym> to use the complement of the extraction
-list (see <a href="#Subsetting-Files">Subsetting Files</a>).
-Since no extraction list is explicitly specified (with ‘<samp>-v</samp>’),
-the default is to extract all variables.
-The complement of all variables is no variables.
-<a name="index-_002dA-2"></a>
-<a name="index-_002d_002dapn-2"></a>
-<a name="index-_002d_002dappend-2"></a>
-<a name="index-appending-to-files-2"></a>
-Without any variables to extract, the append (‘<samp>-A</samp>’) command
-(see <a href="#Appending-Variables">Appending Variables</a>) has only to extract and copy
-(i.e., append) global attributes to the output file.
-</p>
-<a name="xmp_att_glb_cpy"></a> <!-- http://nco.sf.net/nco.html#xmp_att_var_cpy --><p>Copy/append metadata (not data) from variables in one file to
-variables in a second file.
-When copying/subsetting/appending files (as opposed to printing them),
-the copying of data, variable metadata, and global/group metadata are
-now turned OFF by ‘<samp>-H</samp>’, ‘<samp>-m</samp>’, and ‘<samp>-M</samp>’, respectively.
-This is the opposite sense in which these switches work when
-<em>printing</em> a file.
-One can use these switches to easily replace data or metadata in one
-file with data or metadata from another:
-</p><div class="example">
-<pre class="example"># Extract naked (data-only) copies of two variables
-ncks -h -M -m -O -C -v one,three_dmn_rec_var ~/nco/data/in.nc ~/out.nc
-# Change values to be sure original values are not copied in following step
-ncap2 -O -v -s 'one*=2;three_dmn_rec_var*=0' ~/nco/data/in.nc ~/in2.nc
-# Append in2.nc metadata (not data!) to out.nc
-ncks -A -C -H -v one,three_dmn_rec_var ~/in2.nc ~/out.nc
-</pre></div>
-<p>Variables in <samp>out.nc</samp> now contain data (not metadata) from
-<samp>in.nc</samp> and metadata (not data) from <samp>in2.nc</samp>.
-</p>
-<a name="index-_002ds-1"></a>
-<a name="index-_002d_002dstring-1"></a>
-<a name="index-_002d_002dsng_005ffmt-1"></a>
-<a name="index-printf_0028_0029-2"></a>
-<a name="index-_005cn-_0028linefeed_0029"></a>
-<a name="index-_005ct-_0028horizontal-tab_0029"></a>
-<p>Print variable <code>three_dmn_var</code> from file <samp>in.nc</samp> with
-default notations.
-Next print <code>three_dmn_var</code> as an un-annotated text column.
-Then print <code>three_dmn_var</code> signed with very high precision.
-Finally, print <code>three_dmn_var</code> as a comma-separated list.
-</p><div class="example">
-<pre class="example">% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-...
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -s '%f\n' -C -v three_dmn_var in.nc
-0.000000
-1.000000
-...
-23.000000
-% ncks -s '%+16.10f\n' -C -v three_dmn_var in.nc
- +0.0000000000
- +1.0000000000
-...
- +23.0000000000
-% ncks -s '%f, ' -C -v three_dmn_var in.nc
-0.000000, 1.000000, ..., 23.000000,
-</pre></div>
-<p>Programmers will recognize these as the venerable C language<!-- /@w -->
-<code>printf()</code> formatting strings.
-The second and third options are useful when pasting data into text
-files like reports or papers.
-See <a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a>, for more details on string
-formatting and special characters.
-</p>
-<a name="index-_002d_002dno_005fblank-1"></a>
-<p>As of <acronym>NCO</acronym> version 4.2.2 (October, 2012), <acronym>NCO</acronym> prints
-missing values as blanks (i.e., the underscore character ‘<samp>_</samp>’) by
-default:
-</p><div class="example">
-<pre class="example">% ncks -C -H -v mss_val in.nc
-lon[0]=0 mss_val[0]=73
-lon[1]=90 mss_val[1]=_
-lon[2]=180 mss_val[2]=73
-lon[3]=270 mss_val[3]=_
-% ncks -s '%+5.1f, ' -H -C -v mss_val in.nc
-+73.0, _, +73.0, _,
-</pre></div>
-<p>To print the numeric value of the missing value instead of a blank,
-use the ‘<samp>--no_blank</samp>’ option.
-</p>
-<a name="index-_002dQ-1"></a>
-<a name="index-_002d_002dquiet-1"></a>
-<a name="index-_002dV-1"></a>
-<a name="index-_002d_002dvar_005fval-1"></a>
-<a name="index-_002d_002dno_005fdmn_005fvar_005fnm-1"></a>
-<a name="index-_002d_002dno_005fnm_005fprn-1"></a>
-<p><code>ncks</code> prints in a verbose fashion by default and supplies a
-number of switches to pare-down (or even spruce-up) the output.
-The interplay of the ‘<samp>-Q</samp>’, ‘<samp>-V</samp>’, and (otherwise undocumented)
-‘<samp>--no_nm_prn</samp>’ switches yields most desired verbosities:
-</p><div class="example">
-<pre class="verbatim">% ncks -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-time[0]=1 lat[0]=-90 lon[0]=0 three_dmn_rec_var[0]=1
-% ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-three_dmn_rec_var[0]=1
-% ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-% ncks -Q --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-% ncks --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1 -90 0 1
-</pre></div>
-
-<p>One dimensional arrays of characters stored as netCDF variables are
-automatically printed as strings, whether or not they are
-NUL-terminated, e.g.,
-</p><div class="example">
-<pre class="example">ncks -v fl_nm in.nc
-</pre></div>
-<p>The <code>%c</code> formatting code is useful for printing
-multidimensional arrays of characters representing fixed length strings
-</p><div class="example">
-<pre class="example">ncks -s '%c' -v fl_nm_arr in.nc
-</pre></div>
-<a name="index-core-dump-2"></a>
-<p>Using the <code>%s</code> format code on strings which are not NUL-terminated
-(and thus not technically strings) is likely to result in a core dump.
-</p>
-<a name="index-subsetting-4"></a>
-<a name="index-exclusion-2"></a>
-<a name="index-extraction-2"></a>
-<a name="index-CF-conventions-6"></a>
-<a name="index-coordinates-attribute-1"></a>
-<a name="index-bounds-attribute-2"></a>
-<a name="index-ancillary_005fvariables-attribute-1"></a>
-<p>Create netCDF <samp>out.nc</samp> containing all variables, and any associated
-coordinates, except variable <code>time</code>, from netCDF <samp>in.nc</samp>:
-</p><div class="example">
-<pre class="example">ncks -x -v time in.nc out.nc
-</pre></div>
-<p>As a special case of this, consider how to remove a
-variable such as <code>time_bounds</code> that is identified in a
-<acronym>CF</acronym> Convention (see <a href="#CF-Conventions">CF Conventions</a>) compliant
-<code>ancillary_variables</code>, <code>bounds</code>, or <code>coordinates</code>
-attribute.
-<acronym>NCO</acronym> subsetting assumes the user wants all ancillary variables,
-axes, bounds and coordinates associated with all extracted variables
-(see <a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a>).
-Hence to exclude a <code>ancillary_variables</code>, <code>bounds</code>, or
-<code>coordinates</code> variable while retaining the “parent” variable
-(here <code>time</code>), one must use the ‘<samp>-C</samp>’ switch:
-</p><div class="example">
-<pre class="example">ncks -C -x -v time_bounds in.nc out.nc
-</pre></div>
-<p>The ‘<samp>-C</samp>’ switch tells the operator <em>NOT</em> to necessarily
-include all the <acronym>CF</acronym> ancillary variables, axes, bounds, and
-coordinates.
-Hence the output file will contain <code>time</code> and not
-<code>time_bounds</code>.
-</p>
-<p>Extract variables <code>time</code> and <code>pressure</code> from netCDF
-<samp>in.nc</samp>.
-If <samp>out.nc</samp> does not exist it will be created.
-Otherwise the you will be prompted whether to append to or to
-overwrite <samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncks -v time,pressure in.nc out.nc
-ncks -C -v time,pressure in.nc out.nc
-</pre></div>
-<p>The first version of the command creates an <samp>out.nc</samp> which contains
-<code>time</code>, <code>pressure</code>, and any coordinate variables associated
-with <var>pressure</var>.
-The <samp>out.nc</samp> from the second version is guaranteed to contain only
-two variables <code>time</code> and <code>pressure</code>.
-</p>
-<p>Create netCDF <samp>out.nc</samp> containing all variables from file
-<samp>in.nc</samp>.
-Restrict the dimensions of these variables to a hyperslab.
-Print (with <code>-H</code>) the hyperslabs to the screen for good measure.
-The specified hyperslab is: the fifth value in dimension <code>time</code>;
-the
-half-open range <em><var>lat</var> > 0.</em> in coordinate <code>lat</code>; the
-half-open range <em><var>lon</var> < 330.</em> in coordinate <code>lon</code>; the
-closed interval <em>0.3 < <var>band</var> < 0.5</em> in coordinate <code>band</code>;
-and cross-section closest to 1000. in coordinate <code>lev</code>.
-Note that limits applied to coordinate values are specified with a
-decimal point, and limits applied to dimension indices do not have a
-decimal point See <a href="#Hyperslabs">Hyperslabs</a>.
-</p><div class="example">
-<pre class="example">ncks -H -d time,5 -d lat,,0.0 -d lon,330.0, -d band,0.3,0.5
--d lev,1000.0 in.nc out.nc
-</pre></div>
-
-<a name="index-wrapped-coordinates-3"></a>
-<p>Assume the domain of the monotonically increasing longitude coordinate
-<code>lon</code> is <em>0 < <var>lon</var> < 360</em>.
-Here, <code>lon</code> is an example of a wrapped coordinate.
-<code>ncks</code> will extract a hyperslab which crosses the Greenwich
-meridian simply by specifying the westernmost longitude as <var>min</var> and
-the easternmost longitude as <var>max</var>, as follows:
-</p><div class="example">
-<pre class="example">ncks -d lon,260.0,45.0 in.nc out.nc
-</pre></div>
-<p>For more details See <a href="#Wrapped-Coordinates">Wrapped Coordinates</a>.
-</p>
-<a name="ncpdq"></a> <!-- http://nco.sf.net/nco.html#ncpdq -->
-<a name="ncpack"></a> <!-- http://nco.sf.net/nco.html#ncpack -->
-<a name="ncunpack"></a> <!-- http://nco.sf.net/nco.html#ncunpack --><hr>
-<a name="ncpdq-netCDF-Permute-Dimensions-Quickly"></a>
-<div class="header">
-<p>
-Next: <a href="#ncra-netCDF-Record-Averager" accesskey="n" rel="next">ncra netCDF Record Averager</a>, Previous: <a href="#ncks-netCDF-Kitchen-Sink" accesskey="p" rel="prev">ncks netCDF Kitchen Sink</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncpdq-netCDF-Permute-Dimensions-Quickly-1"></a>
-<h3 class="section">4.8 <code>ncpdq</code> netCDF Permute Dimensions Quickly</h3>
-<a name="index-ncpdq-4"></a>
-<a name="index-ncpack"></a>
-<a name="index-ncunpack"></a>
-<a name="index-reshape-variables"></a>
-<a name="index-permute-dimensions"></a>
-<a name="index-reverse-dimensions"></a>
-<a name="index-re_002dorder-dimensions"></a>
-<a name="index-re_002ddimension"></a>
-<a name="index-packing-4"></a>
-<a name="index-unpacking-3"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncpdq [-3] [-4] [-6] [-7] [-A] [-a [-]<var>dim</var>[,…]] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]
-[-F] [-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M <var>pck_map</var>] [--mrd] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-P <var>pck_plc</var>] [-p <var>path</var>] [--ppc ...]
-[-R] [-r] [--ram_all] [-t <var>thr_nbr</var>] [-U] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x]
-<var>input-file</var> [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncpdq</code> performs one (not both) of two distinct functions:
-packing or dimension permutation.
-<code>ncpdq</code> is optimized to perform these actions in a parallel
-fashion with a minimum of time and memory.
-The <em>pdq</em> may stand for “Permute Dimensions Quickly”,
-“Pack Data Quietly”, “Pillory Dan Quayle”, or other silly uses.
-</p>
-<a name="index-add_005foffset-3"></a>
-<a name="index-scale_005ffactor-2"></a>
-<a name="index-ncap2-3"></a>
-<a name="index-packing-policy"></a>
-<a name="Packing-and-Unpacking-Functions"></a>
-<h4 class="unnumberedsubsec">Packing and Unpacking Functions</h4>
-<p>The <code>ncpdq</code> packing (and unpacking) algorithms are described
-in <a href="#Methods-and-functions">Methods and functions</a>, and are also implemented in
-<code>ncap2</code>.
-<code>ncpdq</code> extends the functionality of these algorithms by
-providing high level control of the <em>packing policy</em> so that
-users can consistently pack (and unpack) entire files with one command.
-<a name="index-pck_005fplc"></a>
-<a name="index-_002dP-pck_005fplc"></a>
-<a name="index-_002d_002dpck_005fplc-pck_005fplc"></a>
-<a name="index-_002d_002dpack_005fpolicy-pck_005fplc"></a>
-The user specifies the desired packing policy with the ‘<samp>-P</samp>’ switch
-(or its long option equivalents, ‘<samp>--pck_plc</samp>’ and
-‘<samp>--pack_policy</samp>’) and its <var>pck_plc</var> argument.
-Four packing policies are currently implemented:<br>
-</p><dl compact="compact">
-<dt><em>Packing (and Re-Packing) Variables [<em>default</em>]</em></dt>
-<dd><p>Definition: Pack unpacked variables, re-pack packed variables<br>
-Alternate invocation: <code>ncpack</code><br>
-<var>pck_plc</var> key values: ‘<samp>all_new</samp>’, ‘<samp>pck_all_new_att</samp>’<br>
-</p></dd>
-<dt><em>Packing (and not Re-Packing) Variables</em></dt>
-<dd><p>Definition: Pack unpacked variables, copy packed variables<br>
-Alternate invocation: none<br>
-<var>pck_plc</var> key values: ‘<samp>all_xst</samp>’, ‘<samp>pck_all_xst_att</samp>’<br>
-</p></dd>
-<dt><em>Re-Packing Variables</em></dt>
-<dd><p>Definition: Re-pack packed variables, copy unpacked variables<br>
-Alternate invocation: none<br>
-<var>pck_plc</var> key values: ‘<samp>xst_new</samp>’, ‘<samp>pck_xst_new_att</samp>’<br>
-</p></dd>
-<dt><em>Unpacking</em></dt>
-<dd><p>Definition: Unpack packed variables, copy unpacked variables<br>
-Alternate invocation: <code>ncunpack</code><br>
-<var>pck_plc</var> key values: ‘<samp>upk</samp>’, ‘<samp>unpack</samp>’, ‘<samp>pck_upk</samp>’<br>
-</p></dd>
-</dl>
-<p>Equivalent key values are fully interchangeable.
-Multiple equivalent options are provided to satisfy disparate needs
-and tastes of <acronym>NCO</acronym> users working with scripts and from the
-command line.
-</p>
-<p>Regardless of the packing policy selected, <code>ncpdq</code>
-no longer (as of <acronym>NCO</acronym> version 4.0.4 in October, 2010)
-packs coordinate variables, or the special variables, weights,
-and other grid properties described in <a href="#CF-Conventions">CF Conventions</a>.
-Prior <code>ncpdq</code> versions treated coordinate variables and
-grid properties no differently from other variables.
-However, coordinate variables are one-dimensional, so packing saves
-little space on large files, and the resulting files are difficult for
-humans to read.
-<code>ncpdq</code> will, of course, <em>unpack</em> coordinate variables and
-weights, for example, in case some other, non-<acronym>NCO</acronym> software
-packed them in the first place.
-</p>
-<p>Concurrently, Gaussian and area weights and other grid properties are
-often used to derive fields in re-inflated (unpacked) files, so packing
-such grid properties causes a considerable loss of precision in
-downstream data processing.
-If users express strong wishes to pack grid properties, we will
-implement new packing policies.
-An immediate workaround for those needing to pack grid properties
-now, is to use the <code>ncap2</code> packing functions or to rename the
-grid properties prior to calling <code>ncpdq</code>.
-We welcome your feedback.
-</p>
-<p>To reduce required memorization of these complex policy switches,
-<code>ncpdq</code> may also be invoked via a synonym or with switches
-that imply a particular policy.
-<code>ncpack</code> is a synonym for <code>ncpdq</code> and behaves the same
-in all respects.
-Both <code>ncpdq</code> and <code>ncpack</code> assume a default packing
-policy request of ‘<samp>all_new</samp>’.
-Hence <code>ncpack</code> may be invoked without any ‘<samp>-P</samp>’ switch,
-unlike <code>ncpdq</code>.
-Similarly, <code>ncunpack</code> is a synonym for <code>ncpdq</code>
-except that <code>ncpack</code> implicitly assumes a request to unpack,
-i.e., ‘<samp>-P pck_upk</samp>’.
-<a name="index-_002dU"></a>
-<a name="index-_002d_002dupk"></a>
-<a name="index-_002d_002dunpack"></a>
-Finally, the <code>ncpdq</code> ‘<samp>-U</samp>’ switch (or its long option
-equivalents, ‘<samp>--upk</samp>’ and ‘<samp>--unpack</samp>’) requires no argument.
-It simply requests unpacking.
-</p>
-<p>Given the menagerie of synonyms, equivalent options, and implied
-options, a short list of some equivalent commands is appropriate.
-The following commands are equivalent for packing:
-<code>ncpdq -P all_new</code>, <code>ncpdq --pck_plc=all_new</code>, and
-<code>ncpack</code>.
-The following commands are equivalent for unpacking:
-<code>ncpdq -P upk</code>, <code>ncpdq -U</code>, <code>ncpdq --pck_plc=unpack</code>,
-and <code>ncunpack</code>.
-Equivalent commands for other packing policies, e.g., ‘<samp>all_xst</samp>’,
-follow by analogy.
-<a name="index-alias-2"></a>
-<a name="index-ln-_002ds-1"></a>
-<a name="index-symbolic-links-4"></a>
-Note that <code>ncpdq</code> synonyms are subject to the same constraints
-and recommendations discussed in the secion on <code>ncbo</code> synonyms
-(see <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a>).
-That is, symbolic links must exist from the synonym to <code>ncpdq</code>,
-or else the user must define an <code>alias</code>.
-</p>
-<a name="index-packing-map"></a>
-<a name="index-pck_005fmap"></a>
-<a name="index-_002dM-pck_005fmap"></a>
-<a name="index-_002d_002dpck_005fmap-pck_005fmap"></a>
-<a name="index-_002d_002dmap-pck_005fmap"></a>
-<p>The <code>ncpdq</code> packing algorithms must know to which type
-particular types of input variables are to be packed.
-The correspondence between the input variable type and the output,
-packed type, is called the <em>packing map</em>.
-The user specifies the desired packing map with the ‘<samp>-M</samp>’ switch
-(or its long option equivalents, ‘<samp>--pck_map</samp>’ and
-‘<samp>--map</samp>’) and its <var>pck_map</var> argument.
-Five packing maps are currently implemented:<br>
-<a name="index-hgh_005fsht"></a>
-<a name="index-hgh_005fbyt"></a>
-<a name="index-flt_005fsht"></a>
-<a name="index-flt_005fbyt"></a>
-<a name="index-nxt_005flsr"></a>
-<a name="index-NC_005fDOUBLE-1"></a>
-<a name="index-NC_005fFLOAT"></a>
-<a name="index-NC_005fINT64-1"></a>
-<a name="index-NC_005fUINT64-1"></a>
-<a name="index-NC_005fINT"></a>
-<a name="index-NC_005fUINT-1"></a>
-<a name="index-NC_005fSHORT"></a>
-<a name="index-NC_005fUSHORT-1"></a>
-<a name="index-NC_005fCHAR-2"></a>
-<a name="index-NC_005fBYTE"></a>
-<a name="index-NC_005fUBYTE-1"></a>
-</p><dl compact="compact">
-<dt><em>Pack Floating Precisions to <code>NC_SHORT</code> [<em>default</em>]</em></dt>
-<dd><p>Definition: Pack floating precision types to <code>NC_SHORT</code><br>
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>] to <code>NC_SHORT</code><br>
-Types copied instead of packed: [<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]<br>
-<var>pck_map</var> key values: ‘<samp>flt_sht</samp>’, ‘<samp>pck_map_flt_sht</samp>’<br>
-</p></dd>
-<dt><em>Pack Floating Precisions to <code>NC_BYTE</code></em></dt>
-<dd><p>Definition: Pack floating precision types to <code>NC_BYTE</code><br>
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>] to <code>NC_BYTE</code><br>
-Types copied instead of packed: [<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]<br>
-<var>pck_map</var> key values: ‘<samp>flt_byt</samp>’, ‘<samp>pck_map_flt_byt</samp>’<br>
-</p></dd>
-<dt><em>Pack Higher Precisions to <code>NC_SHORT</code></em></dt>
-<dd><p>Definition: Pack higher precision types to <code>NC_SHORT</code><br>
-Map:
-Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>] to <code>NC_SHORT</code><br>
-Types copied instead of packed: [<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]<br>
-<var>pck_map</var> key values: ‘<samp>hgh_sht</samp>’, ‘<samp>pck_map_hgh_sht</samp>’<br>
-</p></dd>
-<dt><em>Pack Higher Precisions to <code>NC_BYTE</code></em></dt>
-<dd><p>Definition: Pack higher precision types to <code>NC_BYTE</code><br>
-Map:
-Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>] to <code>NC_BYTE</code><br>
-Types copied instead of packed: [<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]<br>
-<var>pck_map</var> key values: ‘<samp>hgh_byt</samp>’, ‘<samp>pck_map_hgh_byt</samp>’<br>
-</p></dd>
-<dt><em>Pack to Next Lesser Precision</em></dt>
-<dd><p>Definition: Pack each type to type of next lesser size<br>
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>], to <code>NC_INT</code>.
-Pack [<code>NC_FLOAT</code>,<code>NC_INT</code>,<code>NC_UINT</code>] to <code>NC_SHORT</code>.
-Pack [<code>NC_SHORT</code>,<code>NC_USHORT</code>] to <code>NC_BYTE</code>.<br>
-Types copied instead of packed: [<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]<br>
-<var>pck_map</var> key values: ‘<samp>nxt_lsr</samp>’, ‘<samp>pck_map_nxt_lsr</samp>’<br>
-</p></dd>
-</dl>
-<p>The default ‘<samp>all_new</samp>’ packing policy with the default
-‘<samp>flt_sht</samp>’ packing map reduces the typical <code>NC_FLOAT</code>-dominated
-file size by about 50%.<!-- /@w -->
-‘<samp>flt_byt</samp>’ packing reduces an <code>NC_DOUBLE</code>-dominated file by
-about 87%.<!-- /@w -->
-</p>
-<a name="index-_005fFillValue-4"></a>
-<a name="index-_005fFillValue-5"></a>
-<a name="index-NUL-1"></a>
-<p>The netCDF packing algorithm (see <a href="#Methods-and-functions">Methods and functions</a>) is
-lossy—once packed, the exact original data cannot be recovered without
-a full backup.
-Hence users should be aware of some packing caveats:
-First, the interaction of packing and data equal to the
-<var>_FillValue</var> is complex.
-Test the <code>_FillValue</code> behavior by performing a pack/unpack cycle
-to ensure data that are missing <em>stay</em> missing and data that are
-not misssing do not join the Air National Guard and go missing.
-This may lead you to elect a new <var>_FillValue</var>.
-Second, <code>ncpdq</code> actually allows packing into <code>NC_CHAR</code> (with,
-e.g., ‘<samp>flt_chr</samp>’).
-However, the intrinsic conversion of <code>signed char</code> to higher
-precision types is tricky for values equal to zero, i.e., for
-<code>NUL</code>.
-Hence packing to <code>NC_CHAR</code> is not documented or advertised.
-Pack into <code>NC_BYTE</code> (with, e.g., ‘<samp>flt_byt</samp>’) instead.
-</p>
-<a name="rvr"></a> <!-- http://nco.sf.net/nco.html#rvr --><a name="Dimension-Permutation"></a>
-<h4 class="unnumberedsubsec">Dimension Permutation</h4>
-<p><code>ncpdq</code> re-shapes variables in <var>input-file</var> by re-ordering
-and/or reversing dimensions specified in the dimension list.
-The dimension list is a whitespace-free, comma separated list of
-dimension names, optionally prefixed by negative signs, that follows the
-‘<samp>-a</samp>’ (or long options ‘<samp>--arrange</samp>’, ‘<samp>--permute</samp>’,
-‘<samp>--re-order</samp>’, or ‘<samp>--rdr</samp>’) switch.
-To re-order variables by a subset of their dimensions, specify
-these dimensions in a comma-separated list following ‘<samp>-a</samp>’, e.g.,
-‘<samp>-a lon,lat</samp>’.
-To reverse a dimension, prefix its name with a negative sign in the
-dimension list, e.g., ‘<samp>-a -lat</samp>’.
-Re-ordering and reversal may be performed simultaneously, e.g.,
-‘<samp>-a lon,-lat,time,-lev</samp>’.
-</p>
-<a name="index-record-dimension-9"></a>
-<p>Users may specify any permutation of dimensions, including
-permutations which change the record dimension identity.
-The record dimension is re-ordered like any other dimension.
-<a name="index-concatenation-2"></a>
-<a name="index-record-dimension-10"></a>
-This unique <code>ncpdq</code> capability makes it possible to concatenate
-files along any dimension.
-See <a href="#Concatenation">Concatenation</a> for a detailed example.
-<a name="index-record-variable-1"></a>
-The record dimension is always the most slowly varying dimension in a
-record variable (see <a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a>).
-The specified re-ordering fails if it requires creating more than
-one record dimension amongst all the output variables
-<a name="DOCF67" href="#FOOT67"><sup>67</sup></a>.
-</p>
-<p>Two special cases of dimension re-ordering and reversal deserve special
-mention.
-First, it may be desirable to completely reverse the storage order of a
-variable.
-To do this, include all the variable’s dimensions in the dimension
-re-order list in their original order, and prefix each dimension name
-with the negative sign.
-<a name="index-transpose-1"></a>
-Second, it may useful to transpose a variable’s storage order, e.g.,
-from C<!-- /@w --> to Fortran data storage order
-(see <a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a>).
-To do this, include all the variable’s dimensions in the dimension
-re-order list in reversed order.
-Explicit examples of these two techniques appear below.
-</p>
-
-
-<a name="xmp_ncpdq"></a> <!-- http://nco.sf.net/nco.html#xmp_ncpdq --><p>EXAMPLES
-</p>
-<p>Pack and unpack all variables in file <samp>in.nc</samp> and store the results
-in <samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncpdq in.nc out.nc # Same as ncpack in.nc out.nc
-ncpdq -P all_new -M flt_sht in.nc out.nc # Defaults
-ncpdq -P all_xst in.nc out.nc
-ncpdq -P upk in.nc out.nc # Same as ncunpack in.nc out.nc
-ncpdq -U in.nc out.nc # Same as ncunpack in.nc out.nc
-</pre></div>
-<p>The first two commands pack any unpacked variable in the input file.
-They also unpack and then re-pack every packed variable.
-The third command only packs unpacked variables in the input file.
-If a variable is already packed, the third command copies it unchanged
-to the output file.
-The fourth and fifth commands unpack any packed variables.
-If a variable is not packed, the third command copies it unchanged.
-</p>
-<p>The previous examples all utilized the default packing map.
-Suppose you wish to archive all data that are currently unpacked
-into a form which only preserves 256 distinct values.
-Then you could specify the packing map <var>pck_map</var> as ‘<samp>hgh_byt</samp>’
-and the packing policy <var>pck_plc</var> as ‘<samp>all_xst</samp>’:
-</p><div class="example">
-<pre class="example">ncpdq -P all_xst -M hgh_byt in.nc out.nc
-</pre></div>
-<a name="index-appending-variables-3"></a>
-<a name="index-_002dA-3"></a>
-<a name="index-_002dv"></a>
-<p>Many different packing maps may be used to construct a given file
-by performing the packing on subsets of variables (e.g., with ‘<samp>-v</samp>’)
-and using the append feature with ‘<samp>-A</samp>’ (see <a href="#Appending-Variables">Appending Variables</a>).
-</p>
-<p>Users may wish to unpack data packed with the <acronym>HDF</acronym> convention,
-and then re-pack it with the netCDF convention so that all their
-datasets use the same packing convention prior to intercomparison.
-<a name="index-ncl_005fconvert2nc-1"></a>
-<a name="index-NCL-1"></a>
-</p><div class="example">
-<pre class="example"># One-step procedure: For NCO 4.4.0+, netCDF 4.3.1+
-# 1. Convert, unpack, and repack HDF file into netCDF file
-ncpdq --hdf_upk -P xst_new modis.hdf modis.nc # HDF4 files
-ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5 files
-
-# One-step procedure: For NCO 4.3.7--4.3.9
-# 1. Convert, unpack, and repack HDF file into netCDF file
-ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc # HDF4
-ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5
-
-# Two-step procedure: For NCO 4.3.6 and earlier
-# 1. Convert HDF file to netCDF file
-ncl_convert2nc modis.hdf
-# 2. Unpack using HDF convention and repack using netCDF convention
-ncpdq --hdf_upk -P xst_new modis.nc modis.nc
-</pre></div>
-<p><acronym>NCO</acronym> now
-<a name="DOCF68" href="#FOOT68"><sup>68</sup></a>
-automatically detects <acronym>HDF4</acronym> files.
-In this case it produces an output file <samp>modis.nc</samp> which preserves
-the <acronym>HDF</acronym> packing used in the input file.
-The <code>ncpdq</code> command first unpacks all packed variables using the
-<acronym>HDF</acronym> unpacking algorithm (as specified by ‘<samp>--hdf_upk</samp>’),
-and then repacks those same variables using the netCDF algorithm
-(because that is the only algorithm <acronym>NCO</acronym> packs with).
-As described above the ‘<samp>--P xst_new</samp>’ packing policy only repacks
-variables that are already packed.
-Not-packed variables are copied directly without loss of precision
-<a name="DOCF69" href="#FOOT69"><sup>69</sup></a>.
-</p>
-<p>Re-order file <samp>in.nc</samp> so that the dimension <code>lon</code> always
-precedes the dimension <code>lat</code> and store the results in
-<samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncpdq -a lon,lat in.nc out.nc
-ncpdq -v three_dmn_var -a lon,lat in.nc out.nc
-</pre></div>
-<p>The first command re-orders every variable in the input file.
-The second command extracts and re-orders only the variable
-<code>three_dmn_var</code>.
-</p>
-<a name="index-reverse-dimensions-1"></a>
-<p>Suppose the dimension <code>lat</code> represents latitude and monotonically
-increases increases from south to north.
-Reversing the <code>lat</code> dimension means re-ordering the data so that
-latitude values decrease monotonically from north to south.
-Accomplish this with
-</p><div class="example">
-<pre class="example">% ncpdq -a -lat in.nc out.nc
-% ncks -C -v lat in.nc
-lat[0]=-90
-lat[1]=90
-% ncks -C -v lat out.nc
-lat[0]=90
-lat[1]=-90
-</pre></div>
-<p>This operation reversed the latitude dimension of all variables.
-Whitespace immediately preceding the negative sign that specifies
-dimension reversal may be dangerous.
-<a name="index-long-options-1"></a>
-<a name="index-quotes-3"></a>
-Quotes and long options can help protect negative signs that should
-indicate dimension reversal from being interpreted by the shell as
-dashes that indicate new command line switches.
-</p><div class="example">
-<pre class="example">ncpdq -a -lat in.nc out.nc # Dangerous? Whitespace before "-lat"
-ncpdq -a '-lat' in.nc out.nc # OK. Quotes protect "-" in "-lat"
-ncpdq -a lon,-lat in.nc out.nc # OK. No whitespace before "-"
-ncpdq --rdr=-lat in.nc out.nc # Preferred. Uses "=" not whitespace
-</pre></div>
-
-<a name="index-reverse-dimensions-2"></a>
-<p>To create the mathematical transpose of a variable, place all its
-dimensions in the dimension re-order list in reversed order.
-This example creates the transpose of <code>three_dmn_var</code>:
-</p><div class="example">
-<pre class="example">% ncpdq -a lon,lev,lat -v three_dmn_var in.nc out.nc
-% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lon[0]=0 lev[0]=100 lat[0]=-90 three_dmn_var[0]=0
-lon[0]=0 lev[0]=100 lat[1]=90 three_dmn_var[1]=12
-lon[0]=0 lev[1]=500 lat[0]=-90 three_dmn_var[2]=4
-...
-lon[3]=270 lev[1]=500 lat[1]=90 three_dmn_var[21]=19
-lon[3]=270 lev[2]=1000 lat[0]=-90 three_dmn_var[22]=11
-lon[3]=270 lev[2]=1000 lat[1]=90 three_dmn_var[23]=23
-</pre></div>
-
-<a name="index-reverse-data"></a>
-<p>To completely reverse the storage order of a variable, include
-all its dimensions in the re-order list, each prefixed by a negative
-sign.
-This example reverses the storage order of <code>three_dmn_var</code>:
-</p><div class="example">
-<pre class="example">% ncpdq -a -lat,-lev,-lon -v three_dmn_var in.nc out.nc
-% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lat[0]=90 lev[0]=1000 lon[0]=270 three_dmn_var[0]=23
-lat[0]=90 lev[0]=1000 lon[1]=180 three_dmn_var[1]=22
-lat[0]=90 lev[0]=1000 lon[2]=90 three_dmn_var[2]=21
-...
-lat[1]=-90 lev[2]=100 lon[1]=180 three_dmn_var[21]=2
-lat[1]=-90 lev[2]=100 lon[2]=90 three_dmn_var[22]=1
-lat[1]=-90 lev[2]=100 lon[3]=0 three_dmn_var[23]=0
-</pre></div>
-
-<a name="dmn_rcd_mk"></a> <!-- http://nco.sf.net/nco.html#dmn_rcd_mk -->
-<a name="mk_rcd_dmn"></a> <!-- http://nco.sf.net/nco.html#mk_rcd_dmn --><p>Creating a record dimension named, e.g., <code>time</code>, in a file which
-has no existing record dimension is simple with <code>ncecat</code>:
-</p><div class="example">
-<pre class="example">ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"
-</pre></div>
-
-<a name="index-record-dimension-11"></a>
-<p>Now consider a file with all dimensions, including <code>time</code>, fixed
-(non-record).
-Suppose the user wishes to convert <code>time</code> from a fixed dimension to
-a record dimension.
-This may be useful, for example, when the user wishes to append
-additional time slices to the data.
-As of <acronym>NCO</acronym> version 4.0.1 (April, 2010) the preferred method for
-doing this is with <code>ncks</code>:
-</p><div class="example">
-<pre class="example">ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dimension
-</pre></div>
-
-<p>Prior to 4.0.1, the procedure to change an existing fixed dimension into
-a record dimension required three separate commands,
-<code>ncecat</code> followed by <code>ncpdq</code>, and then <code>ncwa</code>.
-The recommended method is now to use ‘<samp>ncks --fix_rec_dmn</samp>’, yet it
-is still instructive to present the original procedure, as it shows how
-multiple operators can achieve the same ends by different means:
-<a name="index-degenerate-dimension-6"></a>
-</p><div class="example">
-<pre class="example">ncecat -O in.nc out.nc # Add degenerate record dimension named "record"
-ncpdq -O -a time,record out.nc out.nc # Switch "record" and "time"
-ncwa -O -a record out.nc out.nc # Remove (degenerate) "record"
-</pre></div>
-<p>The first step creates a degenerate (size equals one) record dimension
-named (by default) <code>record</code>.
-The second step swaps the ordering of the dimensions named <code>time</code>
-and <code>record</code>.
-Since <code>time</code> now occupies the position of the first (least rapidly
-varying) dimension, it becomes the record dimension.
-The dimension named <code>record</code> is no longer a record dimension.
-The third step averages over this degenerate <code>record</code> dimension.
-Averaging over a degenerate dimension does not alter the data.
-The ordering of other dimensions in the file (<code>lat</code>, <code>lon</code>,
-etc.) is immaterial to this procedure.
-See <a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a> and
-<a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a> for other methods of
-changing variable dimensionality, including the record dimension.
-</p>
-<a name="ncra"></a> <!-- http://nco.sf.net/nco.html#ncra --><hr>
-<a name="ncra-netCDF-Record-Averager"></a>
-<div class="header">
-<p>
-Next: <a href="#ncrcat-netCDF-Record-Concatenator" accesskey="n" rel="next">ncrcat netCDF Record Concatenator</a>, Previous: <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly" accesskey="p" rel="prev">ncpdq netCDF Permute Dimensions Quickly</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncra-netCDF-Record-Averager-1"></a>
-<h3 class="section">4.9 <code>ncra</code> netCDF Record Averager</h3>
-<a name="index-averaging-data-2"></a>
-<a name="index-record-average"></a>
-<a name="index-record-dimension-12"></a>
-<a name="index-running-average"></a>
-<a name="index-ncra-3"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncra [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--mro] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [--rth_dbl|flt]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x] [-y <var>op_typ</var>]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncra</code> averages record variables across an arbitrary number of
-<var>input-files</var>.
-<a name="index-degenerate-dimension-7"></a>
-<a name="index-record-dimension-13"></a>
-The record dimension is, by default, retained as a degenerate
-(size 1)<!-- /@w --> dimension in the output variables.
-See <a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<a name="index-multi_002dfile-operators-5"></a>
-<a name="index-standard-input-3"></a>
-<a name="index-stdin-4"></a>
-As a multi-file operator, <code>ncra</code> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-</p>
-<p>Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated).
-<a name="index-hyperslab-4"></a>
-Hyperslabs of the record dimension which include more than one file
-work correctly.
-<a name="index-stride-4"></a>
-<code>ncra</code> supports the <var>stride</var> argument to the ‘<samp>-d</samp>’
-hyperslab option (see <a href="#Hyperslabs">Hyperslabs</a>) for the record dimension only,
-<var>stride</var> is not supported for non-record dimensions.
-</p>
-<p><code>ncra</code> weights each record (e.g., time slice) in the
-<var>input-files</var> equally.
-<code>ncra</code> does not attempt to see if, say, the <code>time</code>
-coordinate is irregularly spaced and thus would require a weighted
-average in order to be a true time average.
-<a name="index-operation-types-1"></a>
-<code>ncra</code> <em>always averages</em> coordinate variables regardless of
-the arithmetic operation type performed on the non-coordinate variables.
-(see <a href="#Operation-Types">Operation Types</a>).
-</p>
-<a name="xmp_ncra"></a> <!-- http://nco.sf.net/nco.html#xmp_ncra --><p>EXAMPLES
-</p>
-<p>Average files <samp>85.nc</samp>, <samp>86.nc</samp>, … <samp>89.nc</samp><!-- /@w -->
-along the record dimension, and store the results in <samp>8589.nc</samp>:
-<a name="index-globbing-5"></a>
-<a name="index-NINTAP-1"></a>
-<a name="index-Processor"></a>
-<a name="index-CCM-Processor-1"></a>
-</p><div class="example">
-<pre class="example">ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra 8[56789].nc 8589.nc
-ncra -n 5,2,1 85.nc 8589.nc
-</pre></div>
-<p>These three methods produce identical answers.
-See <a href="#Specifying-Input-Files">Specifying Input Files</a>, for an explanation of the distinctions
-between these methods.
-</p>
-<a name="index-Fortran-1"></a>
-<p>Assume the files <samp>85.nc</samp>, <samp>86.nc</samp>, … <samp>89.nc</samp><!-- /@w -->
-each contain a record coordinate <var>time</var> of length 12 defined such
-that the third record in <samp>86.nc</samp> contains data from March 1986,
-etc.
-<acronym>NCO</acronym> knows how to hyperslab the record dimension across files.
-Thus, to average data from December, 1985 through February, 1986:
-</p><div class="example">
-<pre class="example">ncra -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
-ncra -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-</pre></div>
-<p>The file <samp>87.nc</samp> is superfluous, but does not cause an error.
-The ‘<samp>-F</samp>’ turns on the Fortran (1-based) indexing convention.
-<a name="index-stride-5"></a>
-The following uses the <var>stride</var> option to average all the March
-temperature data from multiple input files into a single output file
-</p><div class="example">
-<pre class="example">ncra -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
-</pre></div>
-<p>See <a href="#Stride">Stride</a>, for a description of the <var>stride</var> argument.
-</p>
-<p>Assume the <var>time</var> coordinate is incrementally numbered such that
-January, <em>1985 = 1</em><!-- /@w --> and December, <em>1989 = 60</em><!-- /@w -->.
-Assuming ‘<samp>??</samp>’ only expands to the five desired files, the following
-averages June, 1985–June, 1989:
-</p><div class="example">
-<pre class="example">ncra -d time,6.,54. ??.nc 8506_8906.nc
-</pre></div>
-
-<a name="ncrcat"></a> <!-- http://nco.sf.net/nco.html#ncrcat --><hr>
-<a name="ncrcat-netCDF-Record-Concatenator"></a>
-<div class="header">
-<p>
-Next: <a href="#ncrename-netCDF-Renamer" accesskey="n" rel="next">ncrename netCDF Renamer</a>, Previous: <a href="#ncra-netCDF-Record-Averager" accesskey="p" rel="prev">ncra netCDF Record Averager</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncrcat-netCDF-Record-Concatenator-1"></a>
-<h3 class="section">4.10 <code>ncrcat</code> netCDF Record Concatenator</h3>
-<a name="index-concatenation-3"></a>
-<a name="index-record-concatenation"></a>
-<a name="index-ncrcat-2"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncrcat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--md5_digest] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-X ...] [-x]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncrcat</code> concatenates record variables across an arbitrary
-number of <var>input-files</var>.
-<a name="index-record-dimension-14"></a>
-The final record dimension is by default the sum of the lengths of the
-record dimensions in the input files.
-See <a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<a name="index-multi_002dfile-operators-6"></a>
-<a name="index-standard-input-4"></a>
-<a name="index-stdin-5"></a>
-As a multi-file operator, <code>ncrcat</code> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(see <a href="#Large-Numbers-of-Files">Large Numbers of Files</a>).
-</p>
-<p>Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated).
-<a name="index-hyperslab-5"></a>
-Hyperslabs along the record dimension that span more than one file are
-handled correctly.
-<a name="index-stride-6"></a>
-<code>ncra</code> supports the <var>stride</var> argument to the ‘<samp>-d</samp>’
-hyperslab option for the record dimension only, <var>stride</var> is not
-supported for non-record dimensions.
-</p>
-<a name="index-ncpdq-5"></a>
-<a name="index-packing-5"></a>
-<a name="index-unpacking-4"></a>
-<a name="index-add_005foffset-4"></a>
-<a name="index-scale_005ffactor-3"></a>
-<p>Concatenating a variable packed with different scales multiple datasets
-is beyond the capabilities of <code>ncrcat</code> (and <code>ncecat</code>,
-the other concatenator (<a href="#Concatenation">Concatenation</a>).
-<code>ncrcat</code> does not unpack data, it simply <em>copies</em> the data
-from the <var>input-files</var>, and the metadata from the <em>first</em>
-<var>input-file</var>, to the <var>output-file</var>.
-This means that data compressed with a packing convention must use
-the identical packing parameters (e.g., <code>scale_factor</code> and
-<code>add_offset</code>) for a given variable across <em>all</em> input files.
-Otherwise the concatenated dataset will not unpack correctly.
-The workaround for cases where the packing parameters differ across
-<var>input-files</var> requires three steps:
-First, unpack the data using <code>ncpdq</code>.
-Second, concatenate the unpacked data using <code>ncrcat</code>,
-Third, re-pack the result with <code>ncpdq</code>.
-</p>
-<a name="index-ARM-conventions-1"></a>
-<p><code>ncrcat</code> applies special rules to <acronym>ARM</acronym> convention time
-fields (e.g., <code>time_offset</code>).
-See <a href="#ARM-Conventions">ARM Conventions</a> for a complete description.
-</p>
-<a name="xmp_ncrcat"></a> <!-- http://nco.sf.net/nco.html#xmp_ncrcat --><p>EXAMPLES
-</p>
-<p>Concatenate files <samp>85.nc</samp>, <samp>86.nc</samp>, … <samp>89.nc</samp><!-- /@w -->
-along the record dimension, and store the results in <samp>8589.nc</samp>:
-<a name="index-globbing-6"></a>
-<a name="index-NINTAP-2"></a>
-<a name="index-Processor-1"></a>
-<a name="index-CCM-Processor-2"></a>
-</p><div class="example">
-<pre class="example">ncrcat 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncrcat 8[56789].nc 8589.nc
-ncrcat -n 5,2,1 85.nc 8589.nc
-</pre></div>
-<p>These three methods produce identical answers.
-See <a href="#Specifying-Input-Files">Specifying Input Files</a>, for an explanation of the distinctions
-between these methods.
-</p>
-<a name="index-Fortran-2"></a>
-<p>Assume the files <samp>85.nc</samp>, <samp>86.nc</samp>, … <samp>89.nc</samp><!-- /@w -->
-each contain a record coordinate <var>time</var> of length 12<!-- /@w --> defined
-such that the third record in <samp>86.nc</samp> contains data from March
-1986, etc.
-<acronym>NCO</acronym> knows how to hyperslab the record dimension across files.
-Thus, to concatenate data from December, 1985–February, 1986:
-</p><div class="example">
-<pre class="example">ncrcat -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
-ncrcat -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-</pre></div>
-<p>The file <samp>87.nc</samp> is superfluous, but does not cause an error.
-When <code>ncra</code> and <code>ncrcat</code> encounter a file which does
-contain any records that meet the specified hyperslab criteria, they
-disregard the file and proceed to the next file without failing.
-The ‘<samp>-F</samp>’ turns on the Fortran (1-based) indexing convention.
-<a name="index-stride-7"></a>
-</p>
-<p>The following uses the <var>stride</var> option to concatenate all the March
-temperature data from multiple input files into a single output file
-</p><div class="example">
-<pre class="example">ncrcat -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
-</pre></div>
-<p>See <a href="#Stride">Stride</a>, for a description of the <var>stride</var> argument.
-</p>
-<p>Assume the <var>time</var> coordinate is incrementally numbered such that
-January, 1985 = 1<!-- /@w --> and December, 1989 = 60.<!-- /@w -->
-Assuming <code>??</code> only expands to the five desired files, the following
-concatenates June, 1985–June, 1989:
-</p><div class="example">
-<pre class="example">ncrcat -d time,6.,54. ??.nc 8506_8906.nc
-</pre></div>
-
-<a name="ncrename"></a> <!-- http://nco.sf.net/nco.html#ncrename --><hr>
-<a name="ncrename-netCDF-Renamer"></a>
-<div class="header">
-<p>
-Next: <a href="#ncwa-netCDF-Weighted-Averager" accesskey="n" rel="next">ncwa netCDF Weighted Averager</a>, Previous: <a href="#ncrcat-netCDF-Record-Concatenator" accesskey="p" rel="prev">ncrcat netCDF Record Concatenator</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncrename-netCDF-Renamer-1"></a>
-<h3 class="section">4.11 <code>ncrename</code> netCDF Renamer</h3>
-<a name="index-renaming-variables"></a>
-<a name="index-renaming-groups"></a>
-<a name="index-renaming-dimensions"></a>
-<a name="index-renaming-attributes"></a>
-<a name="index-variable-names"></a>
-<a name="index-dimension-names"></a>
-<a name="index-attribute-names-1"></a>
-<a name="index-group-names"></a>
-<a name="index-ncrename-1"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncrename [-a <var>old_name</var>,<var>new_name</var>] [-a …] [-D <var>dbg</var>]
-[-d <var>old_name</var>,<var>new_name</var>] [-d …] [-g <var>old_name</var>,<var>new_name</var>] [-g …]
-[-h] [--hdf] [--hdr_pad <var>nbr</var>] [-l <var>path</var>] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r]
-[-v <var>old_name</var>,<var>new_name</var>] [-v …]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<a name="index-_002e"></a>
-<p><code>ncrename</code> renames netCDF dimensions, variables, attributes, and
-groups.
-Each object that has a name in the list of old names is renamed using
-the corresponding name in the list of new names.
-All the new names must be unique.
-Every old name must exist in the input file, unless the old name is
-preceded by the period (or “dot”) character ‘<samp>.</samp>’.
-The validity of <var>old_name</var> is not checked prior to the renaming.
-Thus, if <var>old_name</var> is specified without the ‘<samp>.</samp>’ prefix that
-indicates the presence of <var>old_name</var> is optional, and <var>old_name</var>
-is not present in <var>input-file</var>, then <code>ncrename</code> will abort.
-The <var>new_name</var> should never be prefixed by a ‘<samp>.</samp>’ (or else the
-period will be included as part of the new name).
-As of <acronym>NCO</acronym> version 4.4.6 (released October, 2014), the
-<var>old_name</var> and <var>new_name</var> arguments may include (or be, for
-groups) partial or full group paths.
-The OPTIONS and EXAMPLES show how to select specific variables
-whose attributes are to be renamed.
-</p>
-<a name="bug_nc4_rename"></a> <!-- http://nco.sf.net/nco.html#bug_nc4_rename --><table class="cartouche" border="1"><tr><td>
-<p>Caveat lector: Unforunately from 2007–present (October, 2014) the
-netCDF library (versions 4.0.0–4.3.2) contained bugs or limitations
-that sometimes prevent <acronym>NCO</acronym> from correctly renaming coordinate
-variables, dimensions, and groups in netCDF4 files.
-(To our knowledge the netCDF library calls for renaming always work
-well on netCDF3 files so one workaround to some netCDF4 issues is
-convert to netCDF3, rename, then convert back).
-To understand the renaming limitations associated with particular
-netCDF versions, read the <code>ncrename</code> documentation below in
-its entirety.
-</p></td></tr></table>
-
-<p>Although <code>ncrename</code> supports full pathnames for both
-<var>old_name</var> and <var>new_name</var>, this is really “window dressing”.
-The full-path to <var>new_name</var> must be identical to the full-path to
-<var>old_name</var> in all classes of objects (attributes, variables,
-dimensions, or groups).
-In other words, <code>ncrename</code> can change only the local names
-of objects, it cannot change the location of the object in the group
-hierarchy within the file.
-Hence using a full-path in <var>new_name</var> is redundant.
-The object name is the terminal path component of <var>new_name</var> and
-this object must already exist in the group specified by the
-<var>old_name</var> path.
-</p>
-<a name="index-data-safety-1"></a>
-<a name="index-safeguards-1"></a>
-<a name="index-temporary-output-files-2"></a>
-<p><code>ncrename</code> is an exception to the normal <acronym>NCO</acronym> rule that
-the user will be interactively prompted before an existing file is
-changed, and that a temporary copy of an output file is constructed
-during the operation.
-If only <var>input-file</var> is specified, then <code>ncrename</code> changes
-object names in the <var>input-file</var> in place without prompting and
-without creating a temporary copy of <code>input-file</code>.
-This is because the renaming operation is considered reversible if the
-user makes a mistake.
-The <var>new_name</var> can easily be changed back to <var>old_name</var> by using
-<code>ncrename</code> one more time.
-</p>
-<p>Note that renaming a dimension to the name of a dependent variable can
-be used to invert the relationship between an independent coordinate
-variable and a dependent variable.
-In this case, the named dependent variable must be one-dimensional and
-should have no missing values.
-Such a variable will become a coordinate variable.
-</p>
-<a name="index-performance-7"></a>
-<a name="index-operator-speed-6"></a>
-<a name="index-speed-7"></a>
-<a name="index-execution-time-6"></a>
-<p>According to the <cite>netCDF User Guide</cite>, renaming objects in netCDF
-files does not incur the penalty of recopying the entire file when the
-<var>new_name</var> is shorter than the <var>old_name</var>.
-Thus <code>ncrename</code> may run much faster (at least on netCDF3 files)
-if judicious use of header padding (see <a href="#Metadata-Optimization">Metadata Optimization</a>) was
-made when producing the <var>input-file</var>.
-Similarly, using the ‘<samp>--hdr_pad</samp>’ option with <code>ncrename</code>
-helps ensure that future metadata changes to <var>output-file</var> occur
-as swifly as possible.
-</p>
-<p>OPTIONS
-</p>
-<dl compact="compact">
-<dt>‘<samp>-a <var>old_name</var>,<var>new_name</var></samp>’</dt>
-<dd><p>Attribute renaming.
-The old and new names of the attribute are specified with ‘<samp>-a</samp>’
-(or ‘<samp>--attribute</samp>’) by the associated <var>old_name</var> and
-<var>new_name</var> values.
-<a name="index-global-attribute-1"></a>
-<a name="index-global-attributes-9"></a>
-<a name="index-attributes_002c-global-9"></a>
-Global attributes are treated no differently than variable attributes.
-This option may be specified more than once.
-As mentioned above, all occurrences of the attribute of a given name
-will be renamed unless the ‘<samp>.</samp>’ form is used, with one exception.
-To change the attribute name for a particular variable, specify
-the <var>old_name</var> in the format <var>old_var_name at old_att_name</var>.
-The ‘<samp>@</samp>’ symbol delimits the variable from the attribute name.
-If the attribute is uniquely named (no other variables contain the
-attribute) then the <var>old_var_name at old_att_name</var> syntax is
-redundant.
-The <var>old_var_name</var> variable names <code>global</code> and <code>group</code>
-have special significance.
-They indicate that <var>old_att_nm</var> should only be renamed where it
-occurs as a global (i.e., root group) metadata attribute (for
-<code>global</code>), or (for <code>group</code>) as <em>any</em> group attribute, and
-not where it occurs as a variable attribute.
-The <var>var_name at att_name</var> syntax is accepted, though not required,
-for the <var>new_name</var>.
-</p>
-</dd>
-<dt>‘<samp>-d <var>old_name</var>,<var>new_name</var></samp>’</dt>
-<dd><p>Dimension renaming.
-The old and new names of the dimension are specified with ‘<samp>-d</samp>’
-(or ‘<samp>--dmn</samp>’, ‘<samp>--dimension</samp>’) by the associated <var>old_name</var>
-and <var>new_name</var> values.
-This option may be specified more than once.
-</p>
-</dd>
-<dt>‘<samp>-g <var>old_name</var>,<var>new_name</var></samp>’</dt>
-<dd><p>Group renaming.
-The old and new names of the group are specified with ‘<samp>-g</samp>’
-(or ‘<samp>--grp</samp>’, ‘<samp>--group</samp>’) by the associated <var>old_name</var>
-and <var>new_name</var> values.
-This option may be specified more than once.
-This functionality is only available in <acronym>NCO</acronym> version 4.3.7
-(October, 2013) or later, and only when built on netCDF library version
-4.3.1-rc1 (August, 2013) or later.
-</p>
-</dd>
-<dt>‘<samp>-v <var>old_name</var>,<var>new_name</var></samp>’</dt>
-<dd><p>Variable renaming.
-The old and new names of the variable are specified with ‘<samp>-v</samp>’
-(or ‘<samp>--variable</samp>’) by the associated <var>old_name</var> and
-<var>new_name</var> values.
-This option may be specified more than once.
-</p></dd>
-</dl>
-
-<a name="xmp_ncrename"></a> <!-- http://nco.sf.net/nco.html#xmp_ncrename --><p>EXAMPLES
-</p>
-<p>Rename the variable <code>p</code> to <code>pressure</code> and <code>t</code> to
-<code>temperature</code> in netCDF <samp>in.nc</samp>.
-In this case <code>p</code> must exist in the input file (or
-<code>ncrename</code> will abort), but the presence of <code>t</code> is optional:
-</p><div class="example">
-<pre class="example">ncrename -v p,pressure -v .t,temperature in.nc
-</pre></div>
-
-<p>Rename the attribute <code>long_name</code> to <code>largo_nombre</code> in the
-variable <code>u</code>, and no other variables in netCDF <samp>in.nc</samp>.
-</p><div class="example">
-<pre class="verbatim">ncrename -a u at long_name,largo_nombre in.nc
-</pre></div>
-
-<p>Rename the group <code>g8</code> to <code>g20</code> in netCDF4 file
-<samp>in_grp.nc</samp>:
-</p><div class="example">
-<pre class="example">ncrename -g g8,g20 in_grp.nc
-</pre></div>
-
-<p>Rename the variable <code>/g1/lon</code> to <code>longitude</code> in netCDF4
-<samp>in_grp.nc</samp>:
-</p><div class="example">
-<pre class="example">ncrename -v /g1/lon,longitude in_grp.nc
-ncrename -v /g1/lon,/g1/longitude in_grp.nc # Alternate
-</pre></div>
-
-<a name="ncrename_crd"></a> <!-- http://nco.sf.net/nco.html#ncrename_crd --><a name="index-coordinate-variables"></a>
-<p><code>ncrename</code> does not automatically attach dimensions to variables of
-the same name.
-This is done to make renaming an easy way to change whether a variable
-is a coordinate.
-If you want to rename a coordinate variable so that it remains a
-coordinate variable, you must separately rename both the dimension and
-the variable:
-</p><div class="example">
-<pre class="example">ncrename -d lon,longitude -v lon,longitude in.nc
-</pre></div>
-<p>Unfortunately, the netCDF4 library had a longstanding bug (all versions
-until 4.3.1-rc5 released in December, 2013) that crashed <acronym>NCO</acronym>
-when performing this operation.
-Simultaneously renaming variables and dimensions in netCDF4 files with
-earlier versions of netCDF is impossible; it must instead be done in two
-separate <code>ncrename</code> invocations (e.g., first rename the
-variable, then rename the dimension) to avoid triggering the libary
-bug.
-</p>
-<p>A related bug causes unintended side-effects with <code>ncrename</code>
-also built with all versions of the netCDF4 library until 4.3.1-rc5
-released in December, 2013):
-This bug caused renaming <em>either</em> a dimension <em>or</em> its
-associated coordinate variable (not both, which would fail as above) in
-a netCDF4 file to inadvertently rename both:
-</p><div class="example">
-<pre class="example"># Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.1-rc5
-ncks -O -h -m -M -4 -v lat_T42 ~/nco/data/in.nc ~/foo.nc
-ncrename -O -v lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames dimension
-ncrename -O -d lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames variable
-</pre></div>
-<p>To avoid this faulty behavior, either build <acronym>NCO</acronym> with netCDF
-version 4.3.1-rc5 or later, or convert the file to netCDF3 first,
-then rename as intended, then convert back.
-Unforunately while this bug and the related coordinate renaming bug
-were fixed in 4.3.1-rc5 (released in December, 2013), a new and related
-bug was discovered in October 2014.
-</p>
-<p>The final known netCDF bug that causes unintended side-effects with
-<code>ncrename</code> affects (at least) versions 4.3.1–4.3.2 of the
-netCDF4 library (and snapshots at least until October, 2014):
-This bug corrupts values or renamed netCDF4 coordinate variables
-(i.e., variables with underlying dimensions of the same name) and
-other (non-coordinate) variables that include an underlying dimension
-that was renamed.
-In other words, <em>renaming</em> coordinate variables and dimensions
-succeeds yet it corrupts the values contained by the affected array
-variables.
-This bug corrupts affected variables by replacing their values with the
-default <code>_FillValue</code> for that variable’s type:
-</p><div class="example">
-<pre class="example"># Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.3
-ncks -O -4 -C -M -v lat ~/nco/data/in.nc ~/bug.nc
-ncrename -O -v lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
-ncrename -O -d lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
-ncrename -O -d lat,tal -v lat,tal ~/bug.nc ~/foo.nc # Broken too
-ncks --cdl ~/foo.nc
-</pre></div>
-<p>To avoid this faulty behavior, either build <acronym>NCO</acronym> with netCDF
-version 4.3.3 (TBD) or later, or convert the file to netCDF3 first, then
-rename as intended, then convert back.
-This bug does not affect renaming of groups or of attributes.
-</p>
-<a name="index-global-attributes-10"></a>
-<a name="index-group-attributes"></a>
-<a name="index-attributes_002c-global-10"></a>
-<a name="index-_005fFillValue-6"></a>
-<a name="index-missing_005fvalue-2"></a>
-<p>Create netCDF <samp>out.nc</samp> identical to <samp>in.nc</samp> except the
-attribute <code>_FillValue</code> is changed to <code>missing_value</code>,
-the attribute <code>units</code> is changed to <code>CGS_units</code> (but only in
-those variables which possess it), the attribute <code>hieght</code> is
-changed to <code>height</code> in the variable <code>tpt</code>, and in the
-variable <code>prs_sfc</code>, if it exists.
-</p><div class="example">
-<pre class="verbatim">ncrename -a _FillValue,missing_value -a .units,CGS_units \
- -a tpt at hieght,height -a prs_sfc at .hieght,height in.nc out.nc
-</pre></div>
-<p>The presence and absence of the ‘<samp>.</samp>’ and ‘<samp>@</samp>’ features
-cause this command to execute successfully only if a number of
-conditions are met.
-All variables <em>must</em> have a <code>_FillValue</code> attribute <em>and</em>
-<code>_FillValue</code> must also be a global attribute.
-The <code>units</code> attribute, on the other hand, will be renamed to
-<code>CGS_units</code> wherever it is found but need not be present in
-the file at all (either as a global or a variable attribute).
-The variable <code>tpt</code> must contain the <code>hieght</code> attribute.
-The variable <code>prs_sfc</code> need not exist, and need not contain the
-<code>hieght</code> attribute.
-</p>
-<p>Rename the global or group attribute <code>Convention</code> to
-<code>Conventions</code>
-</p><div class="example">
-<pre class="verbatim">ncrename -a Convention,Conventions in.nc # Variable and group atts.
-ncrename -a .Convention,Conventions in.nc # Variable and group atts.
-ncrename -a @Convention,Conventions in.nc # Group atts. only
-ncrename -a @.Convention,Conventions in.nc # Group atts. only
-ncrename -a global at Convention,Conventions in.nc # Group atts. only
-ncrename -a .global at .Convention,Conventions in.nc # Group atts. only
-ncrename -a global at Convention,Conventions in.nc # Global atts. only
-ncrename -a .global at .Convention,Conventions in.nc # Global atts. only
-</pre></div>
-<p>The examples without the <code>@</code> character attempt to change the
-attribute name in both Global or Group and variable attributes.
-The examples with the <code>@</code> character attempt to change only
-global and group <code>Convention</code> attributes, and leave unchanged any
-<code>Convention</code> attributes attached directly to variables.
-Attributes prefixed with a period (<code>.Convention</code>) need not be
-present.
-Attributes not prefixed with a period (<code>Convention</code>) must be
-present.
-Variables prefixed with a period (<code>.</code> or <code>.global</code>) need not
-be present.
-Variables not prefixed with a period (<code>global</code>) must be present.
-</p>
-<a name="ncwa"></a> <!-- http://nco.sf.net/nco.html#ncwa --><hr>
-<a name="ncwa-netCDF-Weighted-Averager"></a>
-<div class="header">
-<p>
-Previous: <a href="#ncrename-netCDF-Renamer" accesskey="p" rel="prev">ncrename netCDF Renamer</a>, Up: <a href="#Reference-Manual" accesskey="u" rel="up">Reference Manual</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="ncwa-netCDF-Weighted-Averager-1"></a>
-<h3 class="section">4.12 <code>ncwa</code> netCDF Weighted Averager</h3>
-<a name="index-averaging-data-3"></a>
-<a name="index-weighted-average"></a>
-<a name="index-masked-average"></a>
-<a name="index-broadcasting-variables-4"></a>
-<a name="index-ncwa-4"></a>
-
-<p>SYNTAX
-</p><div class="example">
-<pre class="example">ncwa [-3] [-4] [-6] [-7] [-A] [-a <var>dim</var>[,…]] [-B <var>mask_cond</var>] [-b] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,…]] [-h] [--hdr_pad <var>nbr</var>] [-I]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M <var>mask_val</var>] [-m <var>mask_var</var>] [-N] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
-[-T <var>mask_comp</var>] [-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,…]] [-w <var>weight</var>]
-[-X ...] [-x] [-y <var>op_typ</var>]
-<var>input-file</var> [<var>output-file</var>]
-</pre></div>
-
-<p>DESCRIPTION
-</p>
-<p><code>ncwa</code> averages variables in a single file over arbitrary
-dimensions, with options to specify weights, masks, and normalization.
-See <a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a>, for a description of the
-distinctions between the various statistics tools and concatenators.
-The default behavior of <code>ncwa</code> is to arithmetically average
-every numerical variable over all dimensions and to produce a scalar
-result for each.
-</p>
-<a name="index-degenerate-dimension-8"></a>
-<p>Averaged dimensions are, by default, eliminated as dimensions.
-Their corresponding coordinates, if any, are output as scalar
-variables.
-The ‘<samp>-b</samp>’ switch (and its long option equivalents ‘<samp>--rdd</samp>’ and
-‘<samp>--retain-degenerate-dimensions</samp>’) causes <code>ncwa</code> to retain
-averaged dimensions as degenerate (size 1<!-- /@w -->) dimensions.
-This maintains the association between a dimension (or coordinate) and
-variables after averaging and simplifies, for instance, later
-concatenation along the degenerate dimension.
-</p>
-<p>To average variables over only a subset of their dimensions, specify
-these dimensions in a comma-separated list following ‘<samp>-a</samp>’, e.g.,
-‘<samp>-a time,lat,lon</samp>’.
-<a name="index-arithmetic-operators-2"></a>
-<a name="index-hyperslab-6"></a>
-<a name="index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005d"></a>
-As with all arithmetic operators, the operation may be restricted to
-an arbitrary hypserslab by employing the ‘<samp>-d</samp>’ option
-(see <a href="#Hyperslabs">Hyperslabs</a>).
-<code>ncwa</code> also handles values matching the variable’s
-<code>_FillValue</code> attribute correctly.
-Moreover, <code>ncwa</code> understands how to manipulate user-specified
-weights, masks, and normalization options.
-With these options, <code>ncwa</code> can compute sophisticated averages
-(and integrals) from the command line.
-</p>
-<a name="-w"></a> <!-- http://nco.sf.net/nco.html#-w -->
-<a name="wgt"></a> <!-- http://nco.sf.net/nco.html#wgt --><a name="index-_002dw-weight"></a>
-<a name="index-_002d_002dweight-weight"></a>
-<a name="index-_002d_002dwgt_005fvar-weight"></a>
-<a name="index-_002dm-mask_005fvar"></a>
-<a name="index-_002d_002dmask_002dvariable-mask_005fvar"></a>
-<a name="index-_002d_002dmask_005fvariable-mask_005fvar"></a>
-<a name="index-_002d_002dmsk_005fnm-mask_005fvar"></a>
-<a name="index-_002d_002dmsk_005fvar-mask_005fvar"></a>
-<a name="index-_002dB-mask_005fcond"></a>
-<a name="index-_002d_002dmsk_005fcnd-mask_005fcond"></a>
-<a name="index-_002d_002dmask_005fcondition-mask_005fcond"></a>
-<p><var>mask_var</var> and <var>weight</var>, if specified, are broadcast to conform
-to the variables being averaged.
-<a name="index-rank-4"></a>
-The rank of variables is reduced by the number of dimensions which they
-are averaged over.
-Thus arrays which are one dimensional in the <var>input-file</var> and are
-averaged by <code>ncwa</code> appear in the <var>output-file</var> as scalars.
-This allows the user to infer which dimensions may have been averaged.
-Note that that it is impossible for <code>ncwa</code> to make make a
-<var>weight</var> or <var>mask_var</var> of rank <var>W</var> conform to a <var>var</var> of
-rank <var>V</var> if <var>W > V</var>.
-This situation often arises when coordinate variables (which, by
-definition, are one dimensional) are weighted and averaged.
-<code>ncwa</code> assumes you know this is impossible and so <code>ncwa</code>
-does not attempt to broadcast <var>weight</var> or <var>mask_var</var> to conform
-to <var>var</var> in this case, nor does <code>ncwa</code> print a warning
-message telling you this, because it is so common.
-Specifying <var>dbg > 2</var> does cause <code>ncwa</code> to emit warnings in
-these situations, however.
-</p>
-<p>Non-coordinate variables are always masked and weighted if specified.
-Coordinate variables, however, may be treated specially.
-By default, an averaged coordinate variable, e.g., <code>latitude</code>,
-appears in <var>output-file</var> averaged the same way as any other variable
-containing an averaged dimension.
-In other words, by default <code>ncwa</code> weights and masks
-coordinate variables like all other variables.
-This design decision was intended to be helpful but for some
-applications it may be preferable not to weight or mask coordinate
-variables just like all other variables.
-Consider the following arguments to <code>ncwa</code>:
-<code>-a latitude -w lat_wgt -d latitude,0.,90.</code> where <code>lat_wgt</code> is
-a weight in the <code>latitude</code> dimension.
-Since, by default <code>ncwa</code> weights coordinate variables, the
-value of <code>latitude</code> in the <var>output-file</var> depends on the weights
-in <var>lat_wgt</var> and is not likely to be 45.0<!-- /@w -->, the midpoint latitude
-of the hyperslab.
-<a name="index-coordinate-variable-4"></a>
-<a name="index-_002dI"></a>
-Option ‘<samp>-I</samp>’ overrides this default behavior and causes
-<code>ncwa</code> not to weight or mask coordinate variables
-<a name="DOCF70" href="#FOOT70"><sup>70</sup></a>.
-In the above case, this causes the value of <code>latitude</code> in the
-<var>output-file</var> to be 45.0<!-- /@w -->, an appealing result.
-Thus, ‘<samp>-I</samp>’ specifies simple arithmetic averages for the coordinate
-variables.
-In the case of latitude, ‘<samp>-I</samp>’ specifies that you prefer to archive
-the arithmetic mean latitude of the averaged hyperslabs rather than the
-area-weighted mean latitude.
-<a name="DOCF71" href="#FOOT71"><sup>71</sup></a>.
-</p>
-<a name="index-average-1"></a>
-<a name="index-operation-types-2"></a>
-<p>As explained in See <a href="#Operation-Types">Operation Types</a>, <code>ncwa</code>
-<em>always averages</em> coordinate variables regardless of the arithmetic
-operation type performed on the non-coordinate variables.
-This is independent of the setting of the ‘<samp>-I</samp>’ option.
-The mathematical definition of operations involving rank reduction
-is given above (see <a href="#Operation-Types">Operation Types</a>).
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Mask-condition" accesskey="1">Mask condition</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Normalization-and-Integration" accesskey="2">Normalization and Integration</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<a name="mask"></a> <!-- http://nco.sf.net/nco.html#mask -->
-<a name="msk"></a> <!-- http://nco.sf.net/nco.html#msk -->
-<a name="-m"></a> <!-- http://nco.sf.net/nco.html#-m --><hr>
-<a name="Mask-condition"></a>
-<div class="header">
-<p>
-Next: <a href="#Normalization-and-Integration" accesskey="n" rel="next">Normalization and Integration</a>, Previous: <a href="#ncwa-netCDF-Weighted-Averager" accesskey="p" rel="prev">ncwa netCDF Weighted Averager</a>, Up: <a href="#ncwa-netCDF-Weighted-Averager" accesskey="u" rel="up">ncwa netCDF Weighted Averager</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Mask-condition-1"></a>
-<h4 class="subsection">4.12.1 Mask condition</h4>
-<a name="index-mask-condition"></a>
-<a name="index-truth-condition"></a>
-
-<a name="index-_002d_002dop_005frlt-mask_005fcomp"></a>
-<a name="index-_002d_002dmask_005fcomparator-mask_005fcomp"></a>
-<a name="index-_002d_002dmsk_005fcmp_005ftyp-mask_005fcomp"></a>
-<a name="index-_002d_002dmsk_005fcnd_005fsng-mask_005fcond"></a>
-<a name="index-_002d_002dmask_005fcondition-mask_005fcond-1"></a>
-<a name="index-_002dB-mask_005fcond-1"></a>
-<p>The mask condition has the syntax <em><var>mask_var</var></em>
-<em><var>mask_comp</var></em> <em><var>mask_val</var></em>.
-The preferred method to specify the mask condition is in one string with
-the ‘<samp>-B</samp>’ or ‘<samp>--mask_condition</samp>’ switches.
-The older method is to use the three switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and
-‘<samp>-M</samp>’ to specify the <var>mask_var</var>, <var>mask_comp</var>, and
-<var>mask_val</var>, respectively.
-<a name="DOCF72" href="#FOOT72"><sup>72</sup></a>.
-The <var>mask_condition</var> string is automatically parsed into its three
-constituents <var>mask_var</var>, <var>mask_comp</var>, and <var>mask_val</var>.
-</p>
-<a name="index-comparator"></a>
-<p>Here <var>mask_var</var> is the name of the masking variable (specified with
-‘<samp>-m</samp>’, ‘<samp>--mask-variable</samp>’, ‘<samp>--mask_variable</samp>’,
-‘<samp>--msk_nm</samp>’, or ‘<samp>--msk_var</samp>’).
-The truth <var>mask_comp</var> argument (specified with ‘<samp>-T</samp>’,
-‘<samp>--mask_comparator</samp>’, ‘<samp>--msk_cmp_typ</samp>’, or ‘<samp>--op_rlt</samp>’ may
-be any one of the six arithmetic comparators: <kbd>eq</kbd>, <kbd>ne</kbd>,
-<kbd>gt</kbd>, <kbd>lt</kbd>, <kbd>ge</kbd>, <kbd>le</kbd>.
-These are the Fortran-style character abbreviations for the logical
-comparisons <em>==</em>, <em>!=</em>, <em>></em>, <em><</em>, <em>>=</em>,
-<em><=</em>.
-The mask comparator defaults to <kbd>eq</kbd> (equality).
-<a name="index-_002d_002dmask_002dvalue-mask_005fval"></a>
-<a name="index-_002d_002dmask_005fvalue-mask_005fval"></a>
-<a name="index-_002d_002dmsk_005fval-mask_005fval"></a>
-The <var>mask_val</var> argument to ‘<samp>-M</samp>’ (or ‘<samp>--mask-value</samp>’, or
-‘<samp>--msk_val</samp>’) is the right hand side of the
-<em>mask condition</em>.
-Thus for the <var>i</var>’th element of the hyperslab to be averaged,
-the mask condition is
-<em>mask(i)</em> <var>mask_comp</var> <var>mask_val</var>.
-</p>
-
-<a name="nrm"></a> <!-- http://nco.sf.net/nco.html#nrm -->
-<a name="ntg"></a> <!-- http://nco.sf.net/nco.html#ntg --><hr>
-<a name="Normalization-and-Integration"></a>
-<div class="header">
-<p>
-Previous: <a href="#Mask-condition" accesskey="p" rel="prev">Mask condition</a>, Up: <a href="#ncwa-netCDF-Weighted-Averager" accesskey="u" rel="up">ncwa netCDF Weighted Averager</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Normalization-and-Integration-1"></a>
-<h4 class="subsection">4.12.2 Normalization and Integration</h4>
-<a name="index-normalization"></a>
-<a name="index-_002dN"></a>
-<a name="index-numerator"></a>
-<a name="index-integration"></a>
-<a name="index-dot-product"></a>
-<p><code>ncwa</code> has one switch which controls the normalization of the
-averages appearing in the <var>output-file</var>.
-Short option ‘<samp>-N</samp>’ (or long options ‘<samp>--nmr</samp>’ or
-‘<samp>--numerator</samp>’) prevents <code>ncwa</code> from dividing the weighted
-sum of the variable (the numerator in the averaging expression) by the
-weighted sum of the weights (the denominator in the averaging
-expression).
-Thus ‘<samp>-N</samp>’ tells <code>ncwa</code> to return just the numerator of the
-arithmetic expression defining the operation (see <a href="#Operation-Types">Operation Types</a>).
-</p>
-<p>With this normalization option, <code>ncwa</code> can integrate variables.
-Averages are first computed as sums, and then normalized to obtain the
-average.
-The original sum (i.e., the numerator of the expression in
-<a href="#Operation-Types">Operation Types</a>) is output if default normalization is turned off
-(with ‘<samp><span class="nolinebreak">-N</span></samp>’<!-- /@w -->).
-This sum is the integral (not the average) over the specified
-(with ‘<samp><span class="nolinebreak">-a</span></samp>’<!-- /@w -->, or all, if none are specified) dimensions.
-The weighting variable, if specified (with ‘<samp><span class="nolinebreak">-w</span></samp>’<!-- /@w -->), plays the
-role of the differential increment and thus permits more sophisticated
-integrals (i.e., weighted sums) to be output.
-For example, consider the variable
-<code>lev</code> where <em><var>lev</var> = [100,500,1000]</em> weighted by
-the weight <code>lev_wgt</code> where <em><var>lev_wgt</var> = [10,2,1]</em>.
-<a name="index-dot-product-1"></a>
-The vertical integral of <code>lev</code>, weighted by <code>lev_wgt</code>,
-is the dot product of <var>lev</var> and <var>lev_wgt</var>.
-That this is is 3000.0<!-- /@w --> can be seen by inspection and verified with
-the integration command
-</p><div class="example">
-<pre class="example">ncwa -N -a lev -v lev -w lev_wgt in.nc foo.nc;ncks foo.nc
-</pre></div>
-
-
-
-<a name="xmp_ncwa"></a> <!-- http://nco.sf.net/nco.html#xmp_ncwa --><p>EXAMPLES
-</p>
-<p>Given file <samp>85_0112.nc</samp>:
-</p><div class="example">
-<pre class="verbatim">netcdf 85_0112 {
-dimensions:
- lat = 64 ;
- lev = 18 ;
- lon = 128 ;
- time = UNLIMITED ; // (12 currently)
-variables:
- float lat(lat) ;
- float lev(lev) ;
- float lon(lon) ;
- float time(time) ;
- float scalar_var ;
- float three_dmn_var(lat, lev, lon) ;
- float two_dmn_var(lat, lev) ;
- float mask(lat, lon) ;
- float gw(lat) ;
-}
-</pre></div>
-
-<p>Average all variables in <samp>in.nc</samp> over all dimensions and store
-results in <samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncwa in.nc out.nc
-</pre></div>
-<p>All variables in <samp>in.nc</samp> are reduced to scalars in <samp>out.nc</samp>
-since <code>ncwa</code> averages over all dimensions unless otherwise
-specified (with ‘<samp>-a</samp>’).
-</p>
-<p>Store the zonal (longitudinal) mean of <samp>in.nc</samp> in <samp>out.nc</samp>:
-</p><div class="example">
-<pre class="example">ncwa -a lon in.nc out1.nc
-ncwa -a lon -b in.nc out2.nc
-</pre></div>
-<a name="index-degenerate-dimension-9"></a>
-<p>The first command turns <code>lon</code> into a scalar and the second retains
-<code>lon</code> as a degenerate dimension in all variables.
-</p><div class="example">
-<pre class="example">% ncks -C -H -v lon out1.nc
-lon = 135
-% ncks -C -H -v lon out2.nc
-lon[0] = 135
-</pre></div>
-<p>In either case the tally is simply the size of <code>lon</code>, i.e., 180
-for the <samp>85_0112.nc</samp> file described by the sample header above.
-</p>
-<a name="index-gw-1"></a>
-<a name="index-Gaussian-weights"></a>
-<a name="index-climate-model-5"></a>
-<p>Compute the meridional (latitudinal) mean, with values weighted by
-the corresponding element of <var>gw</var>
-<a name="DOCF73" href="#FOOT73"><sup>73</sup></a>:
-</p><div class="example">
-<pre class="example">ncwa -w gw -a lat in.nc out.nc
-</pre></div>
-<p>Here the tally is simply the size of <code>lat</code>, or 64.<!-- /@w -->
-The sum of the Gaussian weights is 2.0.<!-- /@w -->
-</p>
-<p>Compute the area mean over the tropical Pacific:
-</p><div class="example">
-<pre class="example">ncwa -w gw -a lat,lon -d lat,-20.,20. -d lon,120.,270. in.nc out.nc
-</pre></div>
-<p>Here the tally is
-64 times 128 = 8192.
-</p>
-<a name="index-ORO-1"></a>
-<a name="index-climate-model-6"></a>
-<p>Compute the area-mean over the globe using only points for which
-<var>ORO</var> < 0.5
-<a name="DOCF74" href="#FOOT74"><sup>74</sup></a>:
-</p><div class="example">
-<pre class="example">ncwa -B 'ORO < 0.5' -w gw -a lat,lon in.nc out.nc
-ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon in.nc out.nc
-</pre></div>
-<p>It is considerably simpler to specify the complete <var>mask_cond</var> with
-the single string argument to ‘<samp>-B</samp>’ than with the three separate
-switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and ‘<samp>-M</samp>’
-<a name="DOCF75" href="#FOOT75"><sup>75</sup></a>.
-If in doubt, enclose the <var>mask_cond</var> within quotes since some
-of the comparators have special meanings to the shell.
-</p>
-<p>Assuming 70% of the gridpoints are maritime, then here the tally is
-0.70 times 8192 = 5734.
-</p>
-<p>Compute the global annual mean over the maritime tropical Pacific:
-</p><div class="example">
-<pre class="example">ncwa -B 'ORO < 0.5' -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-</pre></div>
-<p>Further examples will use the one-switch specification of
-<var>mask_cond</var>.
-</p>
-<p>Determine the total area of the maritime tropical Pacific, assuming
-the variable <var>area</var> contains the area of each gridcell
-</p><div class="example">
-<pre class="example">ncwa -N -v area -B 'ORO < 0.5' -a lat,lon \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-</pre></div>
-<p>Weighting <var>area</var> (e.g., by <var>gw</var>) is not appropriate because
-<var>area</var> is <em>already</em> area-weighted by definition.
-Thus the ‘<samp>-N</samp>’ switch, or, equivalently, the ‘<samp>-y ttl</samp>’ switch,
-correctly integrate the cell areas into a total regional area.
-</p>
-<a name="index-mask-condition-1"></a>
-<a name="index-truth-condition-1"></a>
-<p>Mask a file to contain <var>_FillValue</var> everywhere except where
-<em><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var></em>:
-</p><div class="example">
-<pre class="verbatim"># Set masking variable and its scalar thresholds
-export msk_var='three_dmn_var_dbl' # Masking variable
-export thr_max='20' # Maximum allowed value
-export thr_min='10' # Minimum allowed value
-ncecat -O in.nc out.nc # Wrap out.nc in degenerate "record" dimension
-ncwa -O -a record -B "${msk_var} <= ${thr_max}" out.nc out.nc
-ncecat -O out.nc out.nc # Wrap out.nc in degenerate "record" dimension
-ncwa -O -a record -B "${msk_var} >= ${thr_min}" out.nc out.nc
-</pre></div>
-<p>After the first use of <code>ncwa</code>, <samp>out.nc</samp> contains
-<var>_FillValue</var> where <code>${msk_var} >= ${thr_max}</code>.
-The process is then repeated on the remaining data to filter out
-points where <code>${msk_var} <= ${thr_min}</code>.
-The resulting <samp>out.nc</samp> contains valid data only
-where <em><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var></em>.
-</p>
-<a name="ctr"></a> <!-- http://nco.sf.net/nco.html#ctr --><hr>
-<a name="Contributing"></a>
-<div class="header">
-<p>
-Next: <a href="#Quick-Start" accesskey="n" rel="next">Quick Start</a>, Previous: <a href="#Reference-Manual" accesskey="p" rel="prev">Reference Manual</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Contributing-1"></a>
-<h2 class="chapter">5 Contributing</h2>
-<a name="index-contributing"></a>
-<p>We welcome contributions from anyone.
-The project homepage at <a href="https://sf.net/projects/nco">https://sf.net/projects/nco</a>
-contains more information on how to contribute.
-</p>
-<a name="index-PayPal"></a>
-<p>Financial contributions to <acronym>NCO</acronym> development may be made through
-<a href="https://www.paypal.com/xclick/business=zender%40uci.edu&item_name=NCO+development&item_number=nco_dnt_dvl&no_note=1&tax=0¤cy_code=USD">PayPal</a>.
-<acronym>NCO</acronym> has been shared for over 10 years<!-- /@w --> yet only two
-users have contributed any money to the developers
-<a name="DOCF76" href="#FOOT76"><sup>76</sup></a>.
-So you could be the third!
-</p>
-<a name="dvl"></a> <!-- http://nco.sf.net/nco.html#dvl -->
-<a name="cnt"></a> <!-- http://nco.sf.net/nco.html#cnt -->
-<a name="ppl"></a> <!-- http://nco.sf.net/nco.html#ppl --><table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Contributors" accesskey="1">Contributors</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Citation" accesskey="2">Citation</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Proposals-for-Institutional-Funding" accesskey="3">Proposals for Institutional Funding</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Contributors"></a>
-<div class="header">
-<p>
-Next: <a href="#Citation" accesskey="n" rel="next">Citation</a>, Previous: <a href="#Contributing" accesskey="p" rel="prev">Contributing</a>, Up: <a href="#Contributing" accesskey="u" rel="up">Contributing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Contributors-1"></a>
-<h3 class="section">5.1 Contributors</h3>
-<p><acronym>NCO</acronym> would not exist without the dedicated efforts of the
-remarkable software engineers who conceive, develop, and
-maintain netCDF, UDUnits, and OPeNDAP.
-<a name="index-Russ-Rew"></a>
-<a name="index-John-Caron"></a>
-<a name="index-Glenn-Davis"></a>
-<a name="index-Steve-Emmerson"></a>
-<a name="index-James-Gallagher"></a>
-<a name="index-Ed-Hartnett"></a>
-<a name="index-Dennis-Heimbigner"></a>
-Since 1995 <acronym>NCO</acronym> has received support from, I believe, the
-entire staff of all these projects, including
-Russ Rew,
-John Caron,
-Glenn Davis,
-Steve Emmerson,
-James Gallagher,
-Ed Hartnett,
-and Dennis Heimbigner.
-In addition to their roles in maintaining the software stack on which
-<acronym>NCO</acronym> perches, Yertl-like, some of these gentlemen have advised
-or contributed to <acronym>NCO</acronym> specifically. That support is
-acknowledged separately below.
-</p>
-<a name="index-contributors"></a>
-<p>The primary contributors to <acronym>NCO</acronym> development have been:
-</p><dl compact="compact">
-<dd><a name="index-Charlie-Zender-1"></a>
-</dd>
-<dt>Charlie Zender</dt>
-<dd><p>All concept, design and implementation from 1995–2000.
-Since then autotools, bug-squashing, <acronym>CDL</acronym>, chunking,
-documentation, anchoring, recursion, <acronym>GPE</acronym>, packing,
-<acronym>NCO</acronym> library redesign, <code>ncap2</code> features,
-<code>ncbo</code>, <code>ncpdq</code>, <acronym>SMP</acronym> threading and <acronym>MPI</acronym> parallelization,
-netCDF4 integration, external funding, project management, science
-research, releases.
-<a name="index-Henry-Butowsky"></a>
-</p></dd>
-<dt>Henry Butowsky</dt>
-<dd><p>Non-linear operations and <code>min()</code>, <code>max()</code>, <code>total()</code>
-support in <code>ncra</code> and <code>ncwa</code>.
-Type conversion for arithmetic.
-Migration to netCDF3 <acronym>API</acronym>.
-<code>ncap2</code> parser, lexer, <acronym>GSL</acronym>-support, and I/O<!-- /@w -->.
-Multislabbing algorithm.
-Variable wildcarding.
-Numerous hacks.
-<code>ncap2</code> language.
-<a name="index-Rorik-Peterson"></a>
-</p></dd>
-<dt>Rorik Peterson</dt>
-<dd><p>Original autotools build support.
-Long command-line options.
-Original UDUnits support.
-Debianization.
-Numerous bug-fixes.
-<a name="index-Joe-Hamman"></a>
-</p></dd>
-<dt>Joe Hamman</dt>
-<dd><p>Python bindings (NCOpy).
-<a name="index-Daniel-Wang"></a>
-</p></dd>
-<dt>Daniel Wang</dt>
-<dd><p>Script Workflow Analysis for MultiProcessing (<acronym>SWAMP</acronym>).
-<acronym>RPM</acronym> support.
-<a name="index-Harry-Mangalam"></a>
-</p></dd>
-<dt>Harry Mangalam</dt>
-<dd><p>Benchmarking.
-OPeNDAP configuration.
-<a name="index-Pedro-Vicente"></a>
-</p></dd>
-<dt>Pedro Vicente</dt>
-<dd><p>Windows Visual Studio support.
-netCDF4 groups.
-<a name="index-Russ-Rew-1"></a>
-</p></dd>
-<dt>Russ Rew</dt>
-<dd><p>Advice on <acronym>NCO</acronym> structural algorithms
-<a name="index-Brian-Mays"></a>
-</p></dd>
-<dt>Brian Mays</dt>
-<dd><p>Original packaging for Debian <acronym>GNU</acronym>/Linux, <code>nroff</code> man pages.
-<a name="index-George-Shapovalov"></a>
-</p></dd>
-<dt>George Shapovalov</dt>
-<dd><p>Packaging for Gentoo <acronym>GNU</acronym>/Linux.
-<a name="index-Bill-Kocik"></a>
-</p></dd>
-<dt>Bill Kocik</dt>
-<dd><p>Memory management.
-<a name="index-Len-Makin"></a>
-</p></dd>
-<dt>Len Makin</dt>
-<dd><p>NEC SX architecture support.
-<a name="index-Jim-Edwards"></a>
-</p></dd>
-<dt>Jim Edwards</dt>
-<dd><p>AIX architecture support.
-<a name="index-Juliana-Rew"></a>
-</p></dd>
-<dt>Juliana Rew</dt>
-<dd><p>Compatibility with large <acronym>PID</acronym>s.
-<a name="index-Karen-Schuchardt"></a>
-</p></dd>
-<dt>Karen Schuchardt</dt>
-<dd><p>Auxiliary coordinate support.
-<a name="index-Gayathri-Venkitachalam"></a>
-</p></dd>
-<dt>Gayathri Venkitachalam</dt>
-<dd><p><acronym>MPI</acronym> implementation.
-<a name="index-Scott-Capps"></a>
-</p></dd>
-<dt>Scott Capps</dt>
-<dd><p>Large work-load testing
-<a name="index-Peter-Campbell"></a>
-<a name="index-Martin-Dix"></a>
-<a name="index-Mark-Flanner"></a>
-<a name="index-Markus-Liebig"></a>
-<a name="index-Keith-Lindsay"></a>
-<a name="index-Stu-Muller"></a>
-<a name="index-Mike-Page"></a>
-<a name="index-Martin-Schmidt"></a>
-<a name="index-Lori-Sentman"></a>
-<a name="index-Michael-Schulz"></a>
-<a name="index-Rich-Signell"></a>
-<a name="index-Gary-Strand"></a>
-<a name="index-Andrew-Wittenberg"></a>
-<a name="index-George-White"></a>
-<a name="index-Remik-Ziemlinski"></a>
-</p></dd>
-<dt>Peter Campbell, Martin Dix, Mark Flanner, Markus Liebig, Keith Lindsay, Mike Page, Martin Schmidt, Michael Schulz, Lori Sentman, Rich Signell, Gary Strand, George White Andrew Wittenberg, Remik Ziemlinski</dt>
-<dd><p>Excellent bug reports and feature requests.
-<a name="index-Daniel-Baumann"></a>
-<a name="index-Nick-Bower"></a>
-<a name="index-Luk-Claes"></a>
-<a name="index-Barry-deFreese"></a>
-<a name="index-Aleksandar-Jelenak"></a>
-<a name="index-Francesco-Lovergine"></a>
-<a name="index-Matej-Vela"></a>
-</p></dd>
-<dt>Daniel Baumann, Nick Bower, Luk Claebs, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela</dt>
-<dd><p>Debian packaging
-<a name="index-Patrice-Dumas"></a>
-<a name="index-Ed-Hill"></a>
-<a name="index-Orion-Powlawski"></a>
-</p></dd>
-<dt>Patrice Dumas, Ed Hill, Orion Poplawski</dt>
-<dd><p>RedHat packaging
-<a name="index-George-Shapavalov"></a>
-<a name="index-Patrick-Kursawe"></a>
-</p></dd>
-<dt>George Shapavalov, Patrick Kursawe</dt>
-<dd><p>Gentoo packaging
-<a name="index-Filipe-Fernandes"></a>
-</p></dd>
-<dt>Filipe Fernandes</dt>
-<dd><p>OpenSuse packaging
-<a name="index-Alexander-Hansen"></a>
-<a name="index-Takeshi-Enomoto"></a>
-</p></dd>
-<dt>Takeshi Enomoto, Alexander Hansen</dt>
-<dd><p>Mac OS packaging
-<a name="index-Eric-Blake"></a>
-</p></dd>
-<dt>Eric Blake</dt>
-<dd><p>Autoconf/M4 help
-<a name="index-Gavin-Burris"></a>
-<a name="index-Kyle-Wilcox"></a>
-</p></dd>
-<dt>Gavin Burris, Kyle Wilcox</dt>
-<dd><p>RHEL and CentOS build scripts and bug reports.
-<a name="index-Andrea-Cimatoribus"></a>
-</p></dd>
-<dt>Andrea Cimatoribus</dt>
-<dd><p><acronym>NCO</acronym> Spiral Logo
-<a name="index-Martin-Otte"></a>
-<a name="index-Etienne-Tourigny"></a>
-</p></dd>
-<dt>Martin Otte, Etienne Tourigny</dt>
-<dd><p>Single bug reports and fixes
-<a name="index-Wenshan-Wang"></a>
-</p></dd>
-<dt>Wenshan Wang</dt>
-<dd><p><acronym>CMIP5</acronym> and <acronym>MODIS</acronym> processing documentation.
-</p></dd>
-</dl>
-<p>Please let me know if your name was omitted!
-</p>
-<a name="ctt"></a> <!-- http://nco.sf.net/nco.html#ctt --><hr>
-<a name="Citation"></a>
-<div class="header">
-<p>
-Next: <a href="#Proposals-for-Institutional-Funding" accesskey="n" rel="next">Proposals for Institutional Funding</a>, Previous: <a href="#Contributors" accesskey="p" rel="prev">Contributors</a>, Up: <a href="#Contributing" accesskey="u" rel="up">Contributing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Citation-1"></a>
-<h3 class="section">5.2 Citation</h3>
-<a name="index-citation"></a>
-<p>The recommended citations for <acronym>NCO</acronym> software are
-</p><div class="example">
-<pre class="verbatim">Zender, C. S. (2008), Analysis of Self-describing Gridded Geoscience
-Data with netCDF Operators (NCO), Environ. Modell. Softw., 23(10),
-1338-1342, doi:10.1016/j.envsoft.2008.03.004.
-
-Zender, C. S. (2014), netCDF Operator (NCO) User Guide, Version 4.4.3,
-http://nco.sf.net/nco.pdf.
-</pre></div>
-<p>Use the former when referring to overall design, purpose, and
-optimization of <acronym>NCO</acronym>, and use the latter when referring to
-specific features and/or the User Guide itself.
-</p>
-<p>Additional information on citing <acronym>NCO</acronym> is in the User Guide at
-<a href="http://nco.sf.net#ctt">http://nco.sf.net#ctt</a>.
-A complete list of <acronym>NCO</acronym> publications and presentations is at
-<a href="http://nco.sf.net#pub">http://nco.sf.net#pub</a>.
-This list links to the full papers and seminars themselves.
-</p>
-<a name="prp"></a> <!-- http://nco.sf.net/nco.html#prp -->
-<a name="prp_sei"></a> <!-- http://nco.sf.net/nco.html#prp_sei -->
-<a name="fnd"></a> <!-- http://nco.sf.net/nco.html#fnd --><table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Proposals-for-Institutional-Funding" accesskey="1">Proposals for Institutional Funding</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Proposals-for-Institutional-Funding"></a>
-<div class="header">
-<p>
-Previous: <a href="#Citation" accesskey="p" rel="prev">Citation</a>, Up: <a href="#Contributing" accesskey="u" rel="up">Contributing</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Proposals-for-Institutional-Funding-1"></a>
-<h3 class="section">5.3 Proposals for Institutional Funding</h3>
-<a name="index-funding"></a>
-<a name="index-proposals"></a>
-<a name="index-NSF"></a>
-<a name="index-server_002dside-processing-1"></a>
-<a name="index-Distributed-Data-Reduction-_0026-Analysis"></a>
-<a name="index-Scientific-Data-Operators"></a>
-<a name="index-DDRA"></a>
-<a name="index-Server_002dSide-Distributed-Data-Reduction-_0026-Analysis"></a>
-<a name="index-SSDDRA"></a>
-<a name="index-CCSM"></a>
-<a name="index-IPCC-1"></a>
-<a name="index-NSF-1"></a>
-<a name="index-SDO"></a>
-<a name="index-SEIII"></a>
-<a name="index-OptIPuter"></a>
-<p><acronym>NSF</acronym> has funded a
-<a href="http://nco.sf.net#prp_sei">project</a>
-to improve Distributed Data Reduction & Analysis (<acronym>DDRA</acronym>) by
-evolving <acronym>NCO</acronym> into a suite of Scientific Data Operators called
-<acronym>SDO</acronym>.
-<a name="index-parallelism-1"></a>
-The two main components of this project are <acronym>NCO</acronym> parallelism
-(OpenMP, <acronym>MPI</acronym>) and Server-Side <acronym>DDRA</acronym>
-(<acronym>SSDDRA</acronym>) implemented through extensions to <acronym>OPeNDAP</acronym>
-and netCDF4.
-This project will dramatically reduce bandwidth usage for <acronym>NCO</acronym>
-<acronym>DDRA</acronym>.
-</p>
-<a name="index-NASA"></a>
-<a name="index-NRA"></a>
-<a name="index-HDF-3"></a>
-<p>With this first <acronym>NCO</acronym> proposal funded, the content of the
-next <acronym>NCO</acronym> proposal is clear.
-We are interested in obtaining <acronym>NASA</acronym> support for
-<acronym>HDF</acronym>-specific enhancements to <acronym>NCO</acronym>.
-We plan to submit a proposal to the next suitable <acronym>NASA</acronym>
-<acronym>NRA</acronym> or <acronym>NSF</acronym> opportunity.
-</p>
-<p>We are considering other interesting ideas for still more proposals.
-Please contact us if you wish to be involved with any future
-<acronym>NCO</acronym>-related proposals.
-Comments on the proposals and letters of support are also very welcome.
-</p>
-<a name="quicksrt"></a> <!-- http://nco.sf.net/nco.html#quicksrt --><hr>
-<a name="Quick-Start"></a>
-<div class="header">
-<p>
-Next: <a href="#CMIP5-Example" accesskey="n" rel="next">CMIP5 Example</a>, Previous: <a href="#Contributing" accesskey="p" rel="prev">Contributing</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Quick-Start-1"></a>
-<h2 class="chapter">6 Quick Start</h2>
-<a name="index-Quick-Start"></a>
-<p>Simple examples in Bash shell scripts showing how to average data with
-different file structures.
-Here we include monthly, seasonal and annual average with daily or
-monthly data in either one file or multiple files.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Daily-data-in-one-file" accesskey="1">Daily data in one file</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Monthly-data-in-one-file" accesskey="2">Monthly data in one file</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#One-time-point-one-file" accesskey="3">One time point one file</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Multiple-files-with-multiple-time-points" accesskey="4">Multiple files with multiple time points</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Daily-data-in-one-file"></a>
-<div class="header">
-<p>
-Next: <a href="#Monthly-data-in-one-file" accesskey="n" rel="next">Monthly data in one file</a>, Previous: <a href="#Quick-Start" accesskey="p" rel="prev">Quick Start</a>, Up: <a href="#Quick-Start" accesskey="u" rel="up">Quick Start</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Daily-data-in-one-file-1"></a>
-<h3 class="section">6.1 Daily data in one file</h3>
-<a name="index-daily-data"></a>
-<p>Suppose we have daily data from Jan 1st, 1990 to Dec. 31, 2005 in the
-file of <samp>in.nc</samp> with the record dimension as <code>time</code>.
-</p>
-<p><strong>Monthly average:</strong>
-<a name="index-monthly-average"></a>
-<a name="index-average-2"></a>
-<a name="index-time_002daveraging-1"></a>
-</p><div class="example">
-<pre class="verbatim">for yyyy in {1990..2005}; do # Loop over years
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- # Average specific month yyyy-mm
- ncra -O -d time,"${yyyy}-${mm}-01","${yyyy}-${mm}-31" \
- in.nc in_${yyyy}${mm}.nc
- done
-done
-
-# Concatenate monthly files together
-ncrcat -O in_??????.nc out.nc
-</pre></div>
-
-<p><strong>Annual average:</strong>
-<a name="index-annual-average-from-daily-data"></a>
-<a name="index-average-3"></a>
-<a name="index-time_002daveraging-2"></a>
-</p><div class="example">
-<pre class="verbatim">for yyyy in {1990..2005}; do # Loop over years
- ncra -O -d time,"${yyyy}-01-01","${yyyy}-12-31" in.nc in_${yyyy}.nc
-done
-
-# Concatenate annual files together
-ncrcat -O in_????.nc out.nc
-</pre></div>
-<p>The <samp>-O</samp> switch means to overwrite the pre-existing files (see <a href="#Batch-Mode">Batch Mode</a>).
-The <samp>-d</samp> option is to specify the range of hyperslabs (see <a href="#Hyperslabs">Hyperslabs</a>).
-There are detailed instructions on <code>ncra</code> (see <a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a> and <code>ncrcat</code> (see <a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a>).
-<acronym>NCO</acronym> supports UDUnits so that we can use readable dates as time dimension (see <a href="#UDUnits-Support">UDUnits Support</a>).
-</p>
-<hr>
-<a name="Monthly-data-in-one-file"></a>
-<div class="header">
-<p>
-Next: <a href="#One-time-point-one-file" accesskey="n" rel="next">One time point one file</a>, Previous: <a href="#Daily-data-in-one-file" accesskey="p" rel="prev">Daily data in one file</a>, Up: <a href="#Quick-Start" accesskey="u" rel="up">Quick Start</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Monthly-data-in-one-file-1"></a>
-<h3 class="section">6.2 Monthly data in one file</h3>
-<a name="index-monthly-data"></a>
-<p>Inside the input file <samp>in.nc</samp>, the record dimension <code>time</code> is from Jan 1990 to Dec 2005.
-</p>
-<p><strong>Seasonal average (e.g., DJF):</strong>
-<a name="index-seasonal-average"></a>
-<a name="index-average-4"></a>
-<a name="index-time_002daveraging-3"></a>
-</p><div class="example">
-<pre class="example">ncra -O --mro -d time,"1990-12-01",,12,3 in.nc out.nc
-</pre></div>
-
-<p><strong>Annual average:</strong>
-<a name="index-annual-average-from-monthly-data"></a>
-<a name="index-average-5"></a>
-<a name="index-time_002daveraging-4"></a>
-</p><div class="example">
-<pre class="example">ncra -O --mro -d time,,,12,12 in.nc out.nc
-</pre></div>
-<p>Here we use the subcycle feature (i.e., the number after the fourth comma: ‘<samp>3</samp>’ in the seasonal example and the second ‘<samp>12</samp>’ in the annual example)
-to retrieve groups of records separated by regular intervals (see <a href="#Subcycle">Subcycle</a>).
-The option <samp>--mro</samp> switches <code>ncra</code> to produce a Multi-Record Output instead of a single-record output.
-For example, assume <var>snd</var> is a 3D array with dimensions <code>time</code> * <code>latitude</code> * <code>longitude</code>
-and <code>time</code> includes every month from Jan. 1990 to Dec. 2005, 192 months as total, which are 16 years.
-Let’s look at the following two command lines.
-</p><div class="example">
-<pre class="example">ncra --mro -v snd -d time,"1990-12-01",,12,3 in.nc out_mro.nc
-ncra -v snd -d time,"1990-12-01",,12,3 in.nc out_sro.nc
-</pre></div>
-<p>In the first output file, <samp>out_mro.nc</samp>, <var>snd</var> is still a 3D array with dimensions <code>time</code> * <code>latitude</code> * <code>longitude</code>,
-but the length of <code>time</code> now is 16, meaning 16 winters.
-In the second output file, <samp>out_sro.nc</samp>, the length of <code>time</code> is only 1<!-- /@w -->.
-It is now the average of all the 16 winters.
-</p>
-<p>when using ‘<samp>-d <var>dim</var>,min[,max]</samp>’ to specify the hyperslabs,
-you can leave it blank if you want to include the minimum or the maximum of the data, like we did above.
-</p>
-<hr>
-<a name="One-time-point-one-file"></a>
-<div class="header">
-<p>
-Next: <a href="#Multiple-files-with-multiple-time-points" accesskey="n" rel="next">Multiple files with multiple time points</a>, Previous: <a href="#Monthly-data-in-one-file" accesskey="p" rel="prev">Monthly data in one file</a>, Up: <a href="#Quick-Start" accesskey="u" rel="up">Quick Start</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="One-time-point-one-file-1"></a>
-<h3 class="section">6.3 One time point one file</h3>
-<a name="index-daily-data-1"></a>
-<a name="index-monthly-data-1"></a>
-<a name="index-average-6"></a>
-<a name="index-time_002daveraging-5"></a>
-<p>This means if you have daily data of 30 days, there will be 30 data files.
-Or if you have monthly data of 12 months, there will be 12 data files.
-Dealing with this kind of files, you need to specify the file names in shell scripts and pass them to NCO operators.
-For example, your daily data files may look like <samp>snd_19900101.nc</samp>, <samp>snd_19900102.nc</samp>, <samp>snd_19900103.nc</samp> ...
-If you want to know the monthly average of Jan 1990, you can write like,
-</p><div class="example">
-<pre class="example">ncra -O snd_199001??.nc out.nc
-</pre></div>
-<p>You might want to use loop if you need the average of each month.
-</p><div class="example">
-<pre class="verbatim">for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- ncra -O snd_????${mm}??.nc out_${mm}.nc
-done
-</pre></div>
-
-<hr>
-<a name="Multiple-files-with-multiple-time-points"></a>
-<div class="header">
-<p>
-Previous: <a href="#One-time-point-one-file" accesskey="p" rel="prev">One time point one file</a>, Up: <a href="#Quick-Start" accesskey="u" rel="up">Quick Start</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Multiple-files-with-multiple-time-points-1"></a>
-<h3 class="section">6.4 Multiple files with multiple time points</h3>
-<a name="index-daily-data-2"></a>
-<a name="index-monthly-data-2"></a>
-<p>Similar as the last one, it’s more about shell scripts.
-Suppose you have daily data with one month of them in one data file.
-The monthly average is simply to apply <code>ncra</code> on the specific data file.
-And for seasonal averages, you can specify the three months by shell scripts.
-</p>
-<a name="cmip5"></a> <!-- http://nco.sf.net/nco.html#cmip5 -->
-<a name="godad"></a> <!-- http://nco.sf.net/nco.html#godad --><hr>
-<a name="CMIP5-Example"></a>
-<div class="header">
-<p>
-Next: <a href="#Parallel" accesskey="n" rel="next">Parallel</a>, Previous: <a href="#Quick-Start" accesskey="p" rel="prev">Quick Start</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="CMIP5-Example-1"></a>
-<h2 class="chapter">7 <acronym>CMIP5</acronym> Example</h2>
-<a name="index-CMIP5"></a>
-<a name="index-GODAD"></a>
-
-<p>The fifth phase of the Coupled Model Intercomparison Project
-(<a href="http://cmip-pcmdi.llnl.gov/cmip5/index.html?submenuheader=0"><acronym>CMIP5</acronym></a>)
-provides a multi-model framework for comparing the mechanisms and
-responses of climate models from around the world.
-However, it is a tremendous workload to retrieve a single climate
-statistic from all these models, each of which includes several ensemble
-members.
-Not only that, it is too often a tedious process that impedes new
-research and hypothesis testing.
-Our <acronym>NASA</acronym> <acronym>ACCESS</acronym> 2011 project simplified and
-accelerated this process.
-</p>
-<p>Traditional geoscience data analysis requires users to work with
-numerous flat (data in one level or namespace) files.
-In that paradigm instruments or models produce, and then repositories
-archive and distribute, and then researchers request and analyze,
-collections of flat files.
-<acronym>NCO</acronym> works well with that paradigm, yet it also embodies the
-necessary algorithms to transition geoscience data analysis from relying
-solely on traditional (or “flat”) datasets to allowing newer
-hierarchical (or “nested”) datasets.
-</p>
-<p>Hierarchical datasets support and enable combining all datastreams that
-meet user-specified criteria into a single or small number of files that
-hold <em>all</em> the science-relevant data.
-<acronym>NCO</acronym> (and no other software to our knowledge) exploits this
-capability now.
-Data and metadata may be aggregated into and analyzed in hierarchical
-structures.
-We call the resulting data storage, distribution, and analysis
-paradigm Group-Oriented Data Analysis and Distribution
-(<acronym>GODAD</acronym>).
-<acronym>GODAD</acronym> lets the scientific question organize the data, not the
-<em>ad hoc</em> granularity of all relevant datasets.
-This chapter illustrates <acronym>GODAD</acronym> techniques applied to
-analysis of the <acronym>CMIP5</acronym> dataset.
-</p>
-<p>To begin, we document below a prototypical example of <acronym>CMIP5</acronym>
-analysis and evaluation using traditional <acronym>NCO</acronym> commands on
-netCDF3-format model and <acronym>HDF-EOS</acronym> format observational
-(<acronym>NASA</acronym> <acronym>MODIS</acronym> satellite instrument) datasets.
-These examples complement the <acronym>NCO</acronym> User Guide by detailing
-in-depth data analysis in a frequently encountered “real world”
-context.
-Graphical representations of the results (<acronym>NCL</acronym> scripts
-available upon request) are provided to illustrate physical meaning of
-the analysis.
-Since <acronym>NCO</acronym> can process hierarchical datasets, i.e., datasets
-stored with netCDF4 groups, we present sample scripts illustrating
-group-based processing as well.
-</p>
-<table class="menu" border="0" cellspacing="0">
-<tr><td align="left" valign="top">• <a href="#Combine-Files" accesskey="1">Combine Files</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Global-Distribution-of-Long_002dterm-Average" accesskey="2">Global Distribution of Long-term Average</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Annual-Average-over-Regions" accesskey="3">Annual Average over Regions</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Monthly-Cycle" accesskey="4">Monthly Cycle</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Regrid-MODIS-Data" accesskey="5">Regrid MODIS Data</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Add-Coordinates-to-MODIS-Data" accesskey="6">Add Coordinates to MODIS Data</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-<tr><td align="left" valign="top">• <a href="#Permute-MODIS-Coordinates" accesskey="7">Permute MODIS Coordinates</a>:</td><td> </td><td align="left" valign="top">
-</td></tr>
-</table>
-
-<hr>
-<a name="Combine-Files"></a>
-<div class="header">
-<p>
-Next: <a href="#Global-Distribution-of-Long_002dterm-Average" accesskey="n" rel="next">Global Distribution of Long-term Average</a>, Previous: <a href="#CMIP5-Example" accesskey="p" rel="prev">CMIP5 Example</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Combine-Files-1"></a>
-<h3 class="section">7.1 Combine Files</h3>
-<a name="index-file-combination"></a>
-<p>Sometimes, the data of one ensemble member will be stored in several
-files to reduce single file size.
-It is more convenient to concatenate these files into a single
-timeseries, and the following script illustrates how.
-Key steps include:
-</p><ol>
-<li> Obtain number and names (or partial names) of files in a directory
-</li><li> Concatenate files along the record dimension (usually time) using
-<code>ncrcat</code> (see <a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a>).
-</li></ol>
-<div class="example">
-<pre class="verbatim">#!/bin/bash # shell type
-shopt -s extglob # enable extended globbing
-
-#===========================================================================
-# Some of the models cut one ensemble member into several files,
-# which include data of different time periods.
-# We'd better concatenate them into one at the beginning so that
-# we won't have to think about which files we need if we want
-# to retrieve a specific time period later.
-#
-# Method:
-# - Make sure 'time' is the record dimension (i.e., left-most)
-# - ncrcat
-#
-# Input files like:
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-190012.nc
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_190101-200512.nc
-#
-# Output files like:
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Combine-Files
-#
-# Execute this script: bash cmb_fl.sh
-#===========================================================================
-
-drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
-
-var=( 'snc' 'snd' ) # Variables
-rlm='LImon' # Realm
-xpt=( 'historical' ) # Experiment ( could be more )
-
-for var_id in {0..1}; do # Loop over two variables
- # Names of all the models (ls [get file names];
- # cut [get model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
- # Number of models (echo [print contents]; wc [count])
- mdl_nbr=$( echo ${mdl_set} | wc -w )
- echo "=============================="
- echo "There are" ${mdl_nbr} "models for" ${var[var_id]}.
-
- for mdl in ${mdl_set}; do # Loop over models
- # Names of all the ensemble members
- nsm_set=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc | \
- cut -d '_' -f 5 | sort | uniq -c | awk '{print $2}' )
- # Number of ensemble members in each model
- nsm_nbr=$( echo ${nsm_set} | wc -w )
- echo "------------------------------"
- echo "Model" ${mdl} "includes" ${nsm_nbr} "ensemble member(s):"
- echo ${nsm_set}"."
-
- for nsm in ${nsm_set}; do # Loop over ensemble members
- # Number of files in this ensemble member
- fl_nbr=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc \
- | wc -w )
-
- # If there is only 1 file, continue to next loop
- if [ ${fl_nbr} -le 1 ]
- then
- echo "There is only 1 file in" ${nsm}.
- continue
- fi
-
- echo "There are" ${fl_nbr} "files in" ${nsm}.
-
- # Starting date of data
- # (sed [the name of the first file includes the starting date])
- yyyymm_str=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc\
- | sed -n '1p' | cut -d '_' -f 6 | cut -d '-' -f 1 )
- # Ending date of data
- # (sed [the name of the last file includes the ending date])
- yyyymm_end=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc\
- | sed -n "${fl_nbr}p" | cut -d '_' -f 6 | cut -d '-' -f 2 )
-
- # Concatenate one ensemble member files
- # into one along the record dimension (now is time)
- ncrcat -O ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- ${nsm}_${yyyymm_str}-${yyyymm_end}
-
- # Remove useless files
- rm ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_\
- !(${yyyymm_str}-${yyyymm_end})
- done
- done
-done
-</pre></div>
-
-<p><acronym>CMIP5</acronym> model data downloaded from the Earth System Grid
-Federation (<a href="http://pcmdi9.llnl.gov/esgf-web-fe/"><acronym>ESGF</acronym></a>)
-does not contain group features yet.
-Therefore users must aggregate flat files into hierarchical ones themselves.
-The following script shows how.
-Each dataset becomes a group in the output file.
-There can be several levels of groups.
-In this example, we employ two experiments (“scenarios”) as the top-level.
-The second-level comprises different models (e.g., CCSM4, CESM1-BGC).
-Many models are run multiple times with slight perturbed initial
-conditions to produce an ensemble of realizations.
-These ensemble members comprise the third level of the hierarchy.
-The script selects two variables, <var>snc</var> and <var>snd</var> (snow cover
-and snow depth).
-<a name="index-_002d_002dgag-1"></a>
-<a name="index-aggregation"></a>
-<a name="index-group-aggregation-1"></a>
-<a name="index-groups_002c-creating"></a>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-#
-#============================================================
-# Aggregate models to one group file
-#
-# Method:
-# - Create files with groups by ncecat --gag
-# - Append groups level by level using ncks
-#
-# Input files like:
-# snc_LImon_CCSM4_historical_r1i1p1_199001-200512.nc
-# snd_LImon_CESM1-BGC_esmHistorical_r1i1p1_199001-200512.nc
-#
-# Output files like:
-# sn_LImon_199001-200512.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Combine-Files
-#
-# Execute this script: bash cmb_fl_grp.sh
-#============================================================
-
-# Directories
-drc_in='../data/'
-drc_out='../data/grp/'
-
-# Constants
-rlm='LImon' # Realm: LandIce; Time frequency: monthly
-tms='200001-200512' # Timeseries
-flt='nc' # File Type
-
-# Geographical weights
-# Can be skipped when ncap2 works on group data
-# Loop over all snc files
-for fn in $( ls ${drc_in}snc_${rlm}_*_${tms}.${flt} ); do
- ncap2 -O -s \
- 'gw = float(cos(lat*3.1416/180.)); gw at long_name="geographical weight";'\
- ${fn} ${fn}
-done
-
-var=( 'snc' 'snd' )
-xpt=( 'esmHistorical' 'historical' )
-mdl=( 'CCSM4' 'CESM1-BGC' 'CESM1-CAM5' )
-
-for i in {0..1}; do # Loop over variables
- for j in {0..1}; do # Loop over experiments
- for k in {0..2}; do # Loop over models
- ncecat -O --glb_mtd_spp -G ${xpt[j]}/${mdl[k]}/${mdl[k]}_ \
- ${drc_in}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_*_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_all-nsm_${tms}.${flt}
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[j]}_all-nsm_${tms}.${flt}
- done # Loop done: models
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[j]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt}
- done # Loop done: experiments
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[0]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt}
-done # Loop done: variables
-
-# Rename output file
-mv ${drc_out}${var[0]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt} \
- ${drc_out}sn_${rlm}_all-mdl_all-xpt_all-nsm_${tms}.${flt}
-# Remove temporary files
-rm ${drc_out}sn?_${rlm}*.nc
-
-#- Rename Group:
-# E.g., file snc_LImon_CESM1-CAM5_historical_r1i1p1_199001-200512.nc
-# is now group /historical/CESM1-CAM5/CESM1-CAM5_00.
-# You can rename it to /historical/CESM1-CAM5/r1i1p1 to make more sense.
-# Note: You don't need to write the full path of the new name.
-ncrename -g ${xpt}/${mdl}/${mdl}_00,r1i1p1 \
- ${drc_out}${var}_${rlm}_${mdl}_all-nsm_${tms}.${flt}
-
-#------------------------------------------------------------
-# Output file structure
-#------------------------------------------------------------
-# esmHistorical
-# {
-# CESM1-BGC
-# {
-# CESM1-BGC_00
-# {
-# snc(time, lat, lon)
-# snd(time, lat, lon)
-# }
-# }
-# }
-# historical
-# {
-# CCSM4
-# {
-# CCSM4_00
-# {
-# snc(time, lat, lon)
-# snd(time, lat, lon)
-# }
-# CCSM4_01
-# {
-# snc(time, lat, lon)
-# snd(time, lat, lon)
-# }
-# CCSM4_02 { ... }
-# CCSM4_03 { ... }
-# CCSM4_04 { ... }
-# }
-# CESM1-BGC
-# {
-# CESM1-BGC_00 { ... }
-# }
-# CESM1-CAM5
-# {
-# r1i1p1 { ... }
-# CESM1-CAM5_01 { ... }
-# CESM1-CAM5_02 { ... }
-# }
-# }
-</pre></div>
-
-<hr>
-<a name="Global-Distribution-of-Long_002dterm-Average"></a>
-<div class="header">
-<p>
-Next: <a href="#Annual-Average-over-Regions" accesskey="n" rel="next">Annual Average over Regions</a>, Previous: <a href="#Combine-Files" accesskey="p" rel="prev">Combine Files</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Global-Distribution-of-Long_002dterm-Average-1"></a>
-<h3 class="section">7.2 Global Distribution of Long-term Average</h3>
-<a name="index-spatial-distribution"></a>
-<a name="index-long_002dterm-average"></a>
-<a name="index-average-7"></a>
-<a name="index-time_002daveraging-6"></a>
-<div class="float"><a name="fgr_003aglb"></a>
-<img src="xmp/fgr1.png" alt="xmp/fgr1">
-
-<div class="float-caption"><p><strong>Figure 7.1: </strong>Global Distribution of Long-term Average.</p></div></div><p>This section illustrates how to calculate the global distribution of
-long-term average (see <a href="#fgr_003aglb">Figure 7.1</a>) with either flat files or
-<a href="http://nco.sourceforge.net/nco.html#index-groups">group file</a>.
-Key steps include:
-</p><ol>
-<li> Average ensemble members of each model using <code>nces</code> (see <a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a>)
-</li><li> Average the record dimension using <code>ncra</code> (see <a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a>)
-</li><li> Store results of each model as a distinct group in a single output file using <code>ncecat</code> (see <a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a>) with the <samp>--gag</samp> option
-</li></ol>
-<p>The first example shows how to process flat files.
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-
-#===========================================================================
-# After cmb_fl.sh
-# Example: Long-term average of each model globally
-#
-# Input files like:
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
-#
-# Output files like:
-# /data/cmip5/output/snc/snc_LImon_all-mdl_historical_all-nsm_clm.nc
-#
-# Online:
-# http://nco.sourceforge.net/nco.html#Global-Distribution-of-Long_002dterm-Average
-#
-# Execute this script: bash glb_avg.sh
-#===========================================================================
-
-#---------------------------------------------------------------------------
-# Parameters
-drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
-drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
-var=( 'snc' 'snd' ) # Variables
-rlm='LImon' # Realm
-xpt=( 'historical' ) # Experiment ( could be more )
-
-fld_out=( 'snc/' 'snd/' ) # Folders of output files
-#---------------------------------------------------------------------------
-
-for var_id in {0..1}; do # Loop over two variables
- # Names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
- # Number of models (echo [print contents]; wc [count])
- mdl_num=$( echo ${mdl_set} | wc -w )
-
- for mdl in ${mdl_set}; do # Loop over models
- # Average all the ensemble members of each model
- # Use nces file ensembles mode: --nsm_fl
- nces --nsm_fl -O -4 -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9" \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}\
- _all-nsm_195601-200512.nc
-
- # Average along time
- ncra -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}\
- _all-nsm_195601-200512.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
-
- echo Model ${mdl} done!
- done
-
- # Remove temporary files
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}*historical*.nc
-
- # Store models as groups in the output file
- ncecat -O --gag ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- all-mdl_${xpt[0]}_all-nsm_clm.nc
-
- echo Var ${var[var_id]} done!
-done
-</pre></div>
-
-<p>With the use of <tt class="key">group</tt>, the above script will be shortened to ONE LINE<!-- /@w -->.
-<a name="index-groups_002c-averaging"></a>
-</p><div class="example">
-<pre class="example"># Data from cmb_fl_grp.sh
-# ensemble averaging
-nces -O --nsm_grp --nsm_sfx='_avg' \
-sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc \
- sn_LImon_all-mdl_all-xpt_nsm-avg.nc
-</pre></div>
-<p>The input file, <samp>sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc</samp>, produced by <samp>cmb_fl_grp.sh</samp>,
-includes all the ensemble members as groups.
-The option ‘<samp>--nsm_grp</samp>’ denotes
-that we are using <a href="http://nco.sf.net/nco.html#nsm_grp">group ensembles mode</a> of <code>nces</code>,
-instead of <a href="http://nco.sf.net/nco.html#nsm_fl">file ensembles mode</a>, ‘<samp>--nsm_fl</samp>’.
-The option ‘<samp>--nsm_sfx='_avg'</samp>’ instructs <code>nces</code>
-to store the output as a new child group <samp>/[model]/[model name]_avg/var</samp>;
-otherwise, the output will be stored directly in the parent group <samp>/[model]/var</samp>.
-In the final output file, <samp>sn_LImon_all-mdl_all-xpt_nsm-avg_tm-avg.nc</samp>,
-sub-groups with a suffix of ‘avg’ are the long-term averages of each model.
-One thing to notice is that for now,
-ensembles with only one ensemble member will be left untouched.
-</p>
-<hr>
-<a name="Annual-Average-over-Regions"></a>
-<div class="header">
-<p>
-Next: <a href="#Monthly-Cycle" accesskey="n" rel="next">Monthly Cycle</a>, Previous: <a href="#Global-Distribution-of-Long_002dterm-Average" accesskey="p" rel="prev">Global Distribution of Long-term Average</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Annual-Average-over-Regions-1"></a>
-<h3 class="section">7.3 Annual Average over Regions</h3>
-<a name="index-annual-average"></a>
-<a name="index-average-8"></a>
-<a name="index-time_002daveraging-7"></a>
-<a name="index-area_002daveraging"></a>
-<a name="index-dimension-order"></a>
-<a name="index-anomalies-1"></a>
-<a name="index-standard-deviation-2"></a>
-<a name="index-renaming-variables-1"></a>
-<a name="index-attributes_002c-editing-1"></a>
-<a name="index-attributes_002c-modifying-1"></a>
-<a name="index-attributes_002c-overwriting-1"></a>
-<a name="index-regression"></a>
-<a name="index-nco-script-file"></a>
-<a name="index-variables_002c-appending"></a>
-<div class="float"><a name="fgr_003aanl"></a>
-<img src="xmp/fgr2.png" alt="xmp/fgr2">
-
-<div class="float-caption"><p><strong>Figure 7.2: </strong>Annual Average over Regions.</p></div></div><p>This section illustrates how to calculate the annual average over
-specific regions (see <a href="#fgr_003aanl">Figure 7.2</a>).
-Key steps include:
-</p><ol>
-<li> Spatial average using <code>ncap2</code> (see <a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a>) and <code>ncwa</code> (see <a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a>);
-</li><li> Change dimension order using <code>ncpdq</code> (see <a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a>);
-</li><li> Annual average using <code>ncra</code> (see <a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a>);
-</li><li> Anomaly from long-term average using <code>ncbo</code> (see <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a>);
-</li><li> Standard deviation using <code>ncbo</code> (see <a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a>) and <code>nces</code> (see <a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a>);
-</li><li> Rename variables using <code>ncrename</code> (see <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>);
-</li><li> Edit attributions using <code>ncatted</code> (see <a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a>);
-</li><li> Linear regression using <code>ncap2</code> (see <a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a>);
-</li><li> Use <code>ncap2</code> (see <a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a>) with nco script file (i.e., <samp>.nco</samp> file);
-</li><li> Move variables around using <code>ncks</code> (see <a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a>).
-</li></ol>
-<p><strong>Flat files example</strong>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-# Includes gsl_rgr.nco
-
-#===========================================================================
-# After cmb_fl.sh
-# Example: Annual trend of each model over Greenland and Tibet
-# ( time- and spatial-average, standard deviation,
-# anomaly and linear regression)
-#
-# Input files:
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
-#
-# Output files:
-# /data/cmip5/outout/snc/snc_LImon_all-mdl_historical_all-nsm_annual.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
-#
-# Execute this script: bash ann_avg.sh
-#===========================================================================
-
-#---------------------------------------------------------------------------
-# Parameters
-drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
-drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
-var=( 'snc' 'snd' ) # Variables
-rlm='LImon' # Realm
-xpt=( 'historical' ) # Experiment ( could be more )
-
-fld_out=( 'snc/' 'snd/' ) # Folders of output files
-# ------------------------------------------------------------
-
-for var_id in {0..1}; do # Loop over two variables
- # Names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
-
- for mdl in ${mdl_set}; do # Loop over models
- # Loop over ensemble members
- for fn in $( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc ); do
- pfx=$( echo ${fn} | cut -d'/' -f6 | cut -d'_' -f1-5 )
-
- # Two regions
- # Geographical weight
- ncap2 -O -s 'gw = cos(lat*3.1415926/180.); gw at long_name="geographical weight"\
- ;gw at units="ratio"' ${fn} ${drc_out}${fld_out[var_id]}${pfx}_gw.nc
- # Greenland
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_1.nc
- # Tibet
- ncwa -O -w gw -d lat,30.0,40.0 -d lon,80.0,100.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_2.nc
-
- # Aggregate 2 regions together
- ncecat -O -u rgn ${drc_out}${fld_out[var_id]}${pfx}_gw_?.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc
-
- # Change dimensions order
- ncpdq -O -a time,rgn ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc
-
- # Remove temporary files (optional)
- rm ${drc_out}${fld_out[var_id]}${pfx}_gw_?.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc
-
- # Annual average (use the feature of 'Duration')
- ncra -O --mro -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9",12,12 \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc
-
- # Anomaly
- # Long-term average
- ncwa -O -a time ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_clm.nc
- # Subtract long-term average
- ncbo -O --op_typ=- ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_clm.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_anm.nc
- done
-
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*_yrly.nc
-
- # Average over all the ensemble members
- ncea -O -4 ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_*_anm.nc ${drc_out}${fld_out[var_id]}\
- ${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm_anm.nc
-
- # Standard deviation ------------------------------
- for fn in $( ls ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_*_anm.nc ); do
- pfx=$( echo ${fn} | cut -d'/' -f8 | cut -d'_' -f1-5 )
-
- # Difference between each ensemble member and the average of all members
- ncbo -O --op_typ=- ${fn} \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_anm.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_dlt.nc
- done
-
- # RMS
- ncea -O -y rmssdn ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_*_dlt.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- # Rename variables
- ncrename -v ${var[var_id]},sdv \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- # Edit attributions
- ncatted -a standard_name,sdv,a,c,"_standard_deviation_over_ensemble" \
- -a long_name,sdv,a,c," Standard Deviation over Ensemble" \
- -a original_name,sdv,a,c," sdv" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- #------------------------------------------------------------
-
- # Linear regression -----------------------------------------
- #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
- # Have to change the name of variable in the commands file
- # of gsl_rgr.nco manually (gsl_rgr.nco is listed below)
- ncap2 -O -S gsl_rgr.nco \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_anm.nc ${drc_out}${fld_out[var_id]}${var[var_id]}\
- _${rlm}_${mdl}_${xpt[0]}_all-nsm_anm_rgr.nc
- #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-
- # Get rid of temporary variables
- ncks -O -v c0,c1,pval,${var[var_id]},gw \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_anm_rgr.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
- #------------------------------------------------------------
-
- # Move the variable 'sdv' into the anomaly files (i.e., *anm.nc files)
- ncks -A -v sdv \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}_*historical*
-
- echo Model ${mdl} done!
- done
-
- # Store models as groups in the output file
- ncecat -O --gag ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_all-mdl_${xpt[0]}_all-nsm_annual.nc
-
- echo Var ${var[var_id]} done!
-done
-</pre></div>
-<p><strong>gsl_rgr.nco</strong>
-</p><div class="example">
-<pre class="verbatim">// Linear Regression
-// Called by ann_avg.sh
-// Caution: make sure the variable name is
-// in agreement with the main script (now is 'snd')
-// Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
-
-// Declare variables
-*c0[$rgn]=0.; // Intercept
-*c1[$rgn]=0.; // Slope
-*sdv[$rgn]=0.; // Standard deviation
-*covxy[$rgn]=0.; // Covariance
-*x = double(time);
-
-for (*rgn_id=0;rgn_id<$rgn.size;rgn_id++) // Loop over regions
-{
- gsl_fit_linear(time,1,snd(:,rgn_id),1,$time.size, \
- &tc0, &tc1, &cov00, &cov01,&cov11,&sumsq); // Linear regression function
- c0(rgn_id) = tc0; // Output results
- c1(rgn_id) = tc1;
- covxy(rgn_id) = gsl_stats_covariance(time,1,\
- $time.size,double(snd(:,rgn_id)),1,$time.size); // Covariance function
- sdv(rgn_id) = gsl_stats_sd(snd(:,rgn_id), \
- 1, $time.size); // Standard deviation function
-}
-
-// P value------------------------------------------------------------
-*time_sdv = gsl_stats_sd(time, 1, $time.size);
-*r_value = covxy/(time_sdv*sdv);
-*t_value = r_value/sqrt((1-r_value^2)/($time.size-2));
-pval = abs(gsl_cdf_tdist_P(t_value, $time.size-2) - \
- gsl_cdf_tdist_P(-t_value, $time.size-2));
-//----------------------------------------------------------------
-
-// Write RAM variables to disk
-//------------------------------------------------------------
-// Usually NCO writes the outputs directly to disk
-// Using RAM variables, declared by *, will shorten running time
-// Output the final results using ram_write()
-//------------------------------------------------------------
-ram_write(c0);
-ram_write(c1);
-</pre></div>
-
-<p>With the <tt class="key">group</tt> feature,
-all the loops over experiments, models and ensemble members can be omitted.
-As we are working on implementing <tt class="key">group</tt> feature in all <acronym>NCO</acronym> operators,
-some functions (e.g., regression and standard deviation over ensemble members)
-may have to wait until the new versions.
-<a name="index-group_002c-spatial-averaging"></a>
-<a name="index-group_002c-temporal-averaging"></a>
-<a name="index-group_002c-anomaly"></a>
-<a name="index-group_002c-standard-deviation"></a>
-<a name="index-group_002c-aggregation"></a>
-<a name="index-group_002c-dimension-permutation"></a>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-#
-#============================================================
-# Group data output by cmb_fl_grp.sh
-# Annual trend of each model over Greenland and Tibet
-# Time- and spatial-average, standard deviation and anomaly
-# No regression yet (needs ncap2)
-#
-# Input files:
-# sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
-#
-# Execute this script: bash ann_avg_grp.sh
-#===========================================================================
-# Input and output directory
-drc='../data/grp/'
-
-# Constants
-pfx='sn_LImon_all-mdl_all-xpt_all-nsm'
-tms='200001-200512' # Time series
-
-# Greenland
-ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc}${pfx}_${tms}.nc \
- ${drc}${pfx}_${tms}_grl.nc
-# Tibet
-ncwa -O -w gw -d lat,30.0,40.0 -d lon,80.0,100.0 -a lat,lon \
- ${drc}${pfx}_${tms}.nc \
- ${drc}${pfx}_${tms}_tbt.nc
-
-# Aggregate 2 regions together
-ncecat -O -u rgn ${drc}${pfx}_${tms}_???.nc \
- ${drc}${pfx}_${tms}_rgn2.nc
-
-# Change dimensions order
-ncpdq -O -a time,rgn ${drc}${pfx}_${tms}_rgn2.nc \
- ${drc}${pfx}_${tms}_rgn2.nc
-
-# Remove temporary files (optional)
-rm ${drc}${pfx}_${tms}_???.nc
-
-#Annual average
-ncra -O --mro -d time,,,12,12 ${drc}${pfx}_${tms}_rgn2.nc \
- ${drc}${pfx}_${tms}_rgn2_ann.nc
-
-# Anomaly
-#------------------------------------------------------------
-# Long-term average
-ncwa -O -a time ${drc}${pfx}_${tms}_rgn2_ann.nc \
- ${drc}${pfx}_${tms}_rgn2_clm.nc
-# Subtract
-ncbo -O --op_typ=- ${drc}${pfx}_${tms}_rgn2_ann.nc \
- ${drc}${pfx}_${tms}_rgn2_clm.nc \
- ${drc}${pfx}_${tms}_rgn2_anm.nc
-#------------------------------------------------------------
-
-# Standard Deviation: inter-annual variability
-# RMS of the above anomaly
-ncra -O -y rmssdn ${drc}${pfx}_${tms}_rgn2_anm.nc \
- ${drc}${pfx}_${tms}_rgn2_stddev.nc
-</pre></div>
-
-<hr>
-<a name="Monthly-Cycle"></a>
-<div class="header">
-<p>
-Next: <a href="#Regrid-MODIS-Data" accesskey="n" rel="next">Regrid MODIS Data</a>, Previous: <a href="#Annual-Average-over-Regions" accesskey="p" rel="prev">Annual Average over Regions</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Monthly-Cycle-1"></a>
-<h3 class="section">7.4 Monthly Cycle</h3>
-<a name="index-monthly-average-1"></a>
-<a name="index-average-9"></a>
-<a name="index-time_002daveraging-8"></a>
-<a name="index-anomalies-2"></a>
-<a name="index-geographical-weight"></a>
-<a name="index-weighted-average-1"></a>
-<div class="float"><a name="fgr_003amon"></a>
-<img src="xmp/fgr3.png" alt="xmp/fgr3">
-
-<div class="float-caption"><p><strong>Figure 7.3: </strong>Monthly Cycle.</p></div></div><p>This script illustrates how to calculate the monthly anomaly from the
-annual average (see <a href="#fgr_003amon">Figure 7.3</a>).
-In order to keep only the monthly cycle,
-we will subtract the annual average of each year from the monthly data,
-instead of subtracting the long-term average.
-This is a little more complicated in coding since we need to loop over years.
-</p>
-<p><strong>Flat files example</strong>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-
-#============================================================
-# After cmb_fl.sh
-# Example: Monthly cycle of each model in Greenland
-#
-# Input files:
-# /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
-#
-# Output files:
-# /data/cmip5/snc/snc_LImon__all-mdl_historical_all-nsm_GN_mthly-anm.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Monthly-Cycle
-#
-# Execute this script: bash mcc.sh
-#============================================================
-
-#------------------------------------------------------------
-# Parameters
-drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
-drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
-var=( 'snc' 'snd' ) # Variables
-rlm='LImon' # Realm
-xpt=( 'historical' ) # Experiment ( could be more )
-
-fld_out=( 'snc/' 'snd/' ) # Folders of output files
-#------------------------------------------------------------
-
-for var_id in {0..1}; do # Loop over two variables
- # names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
-
- for mdl in ${mdl_set}; do ## Loop over models
- # Average all the ensemble members of each model
- ncea -O -4 -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9" \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc
-
- # Greenland
- # Geographical weight
- ncap2 -O -s \
- 'gw = cos(lat*3.1415926/180.); \
- gw at long_name="geographical weight";gw at units="ratio"' \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm_GN.nc
-
- # Anomaly----------------------------------------
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- for yr in {1956..2005}; do # Loop over years
- # If January, calculate the annual average
- if [ ${moy} -eq 1 ]; then
- ncra -O -d time,"${yr}-01-01 00:00:0.0","${yr}-12-31 23:59:9.9" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN.nc ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN_${yr}.nc
- fi
-
- # The specific month
- ncks -O -d time,"${yr}-${mm}-01 00:00:0.0","${yr}-${mm}-31 23:59:9.9" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- all-nsm_GN_${yr}${mm}.nc
- # Subtract the annual average from the monthly data
- ncbo -O --op_typ=- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN_${yr}${mm}.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- all-nsm_GN_${yr}.nc ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_GN_${yr}${mm}_anm.nc
- done
-
- # Average over years
- ncra -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_????${mm}_anm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_${mm}_anm.nc
- done
- #--------------------------------------------------
-
- # Concatenate months together
- ncrcat -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_??_anm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
-
- echo Model ${mdl} done!
- done
-
- rm -f ${drc_out}${fld_out[var_id]}${var[var_id]}*historical*
-
- # Store models as groups in the output file
- ncecat -O --gag -v ${var[var_id]} \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_all-mdl_\
- ${xpt[0]}_all-nsm_GN_mthly-anm.nc
-
- echo Var ${var[var_id]} done!
-done
-</pre></div>
-<p>Using <tt class="key">group</tt> feature and <a href="http://nco.sourceforge.net/nco.html#Hyperslabs">hyperslabs</a> of <code>ncbo</code>,
-the script will be shortened.
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-
-#============================================================
-# Monthly cycle of each ensemble member in Greenland
-#
-# Input file from cmb_fl_grpsh
-# sn_LImon_all-mdl_all-xpt_all-nsm_199001-200512.nc
-# Online: http://nco.sourceforge.net/nco.html#Monthly-Cycle
-#
-# Execute this script in command line: bash mcc_grp.sh
-#============================================================
-# Input and output directory
-drc='../data/grp/'
-
-# Constants
-pfx='sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512'
-
-# Greenland
-ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc}${pfx}.nc ${drc}${pfx}_grl.nc
-
-# Anomaly from annual average of each year
-for yyyy in {2000..2005}; do
- # Annual average
- ncwa -O -d time,"${yyyy}-01-01","${yyyy}-12-31" \
- ${drc}${pfx}_grl.nc ${drc}${pfx}_grl_${yyyy}.nc
-
- # Anomaly
- ncbo -O --op_typ=- -d time,"${yyyy}-01-01","${yyyy}-12-31" \
- ${drc}${pfx}_grl.nc ${drc}${pfx}_grl_${yyyy}.nc \
- ${drc}${pfx}_grl_${yyyy}_anm.nc
-done
-
-# Monthly cycle
-for moy in {1..12}; do
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
- ncra -O -d time,"2000-${mm}-01",,12 \
- ${drc}${pfx}_grl_????_anm.nc ${drc}${pfx}_grl_${mm}_anm.nc
-done
-# Concatenate 12 months together
-ncrcat -O ${drc}${pfx}_grl_??_anm.nc \
- ${drc}${pfx}_grl_mth_anm.nc
-</pre></div>
-
-<hr>
-<a name="Regrid-MODIS-Data"></a>
-<div class="header">
-<p>
-Next: <a href="#Add-Coordinates-to-MODIS-Data" accesskey="n" rel="next">Add Coordinates to MODIS Data</a>, Previous: <a href="#Monthly-Cycle" accesskey="p" rel="prev">Monthly Cycle</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Regrid-MODIS-Data-1"></a>
-<h3 class="section">7.5 Regrid <acronym>MODIS</acronym> Data</h3>
-<a name="index-regrid"></a>
-<a name="index-MODIS"></a>
-<a name="index-bilinear-interpolation"></a>
-<a name="index-interpolation-1"></a>
-<a name="index-renaming-variables-2"></a>
-<a name="index-renaming-attributes-1"></a>
-<a name="index-renaming-dimensions-1"></a>
-<a name="index-attributes_002c-editing-2"></a>
-<a name="index-attributes_002c-modifying-2"></a>
-<a name="index-attributes_002c-overwriting-2"></a>
-<p>In order to compare the results between <acronym>MODIS</acronym> and
-<acronym>CMIP5</acronym> models, one usually regrids one or both datasets so
-that the spatial resolutions match.
-Here, the script illustrates how to regrid <acronym>MODIS</acronym> data.
-Key steps include:
-</p><ol>
-<li> Regrid using bilinear interpolation (see <a href="#Bilinear-interpolation">Bilinear interpolation</a>)
-</li><li> Rename variables, dimensions and attributions using <code>ncrename</code> (see <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>).
-</li></ol>
-<p><strong>Main Script</strong>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-# include bi_interp.nco
-
-#===========================================================================
-# Example for
-# - regrid (using bi_interp.nco): the spatial resolution of MODIS data
-# is much finer than those of CMIP5 models. In order to compare
-# the two, we can regrid MODIS data to comform to CMIP5.
-#
-# Input files (Note: the .hdf files downloaded have to be converted to .nc at
-# the present):
-# /modis/mcd43c3/MCD43C3.A2000049.005.2006271205532.nc
-#
-# Output files:
-# /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Regrid-MODIS-Data
-#
-# Execute this script: bash rgr.sh
-#===========================================================================
-
-var=( 'MCD43C3' ) # Variable
-fld_in=( 'monthly/' ) # Folder of input files
-fld_out=( 'cesm-grid/' ) # Folder of output files
-drc_in='/media/grele_data/wenshan/modis/mcd43c3/' # Directory of input files
-
-for fn in $( ls ${drc_in}${fld_in}${var}.*.nc ); do # Loop over files
- sfx=$( echo $fn | cut -d '/' -f 8 | cut -d '.' -f 2 ) # Part of file names
-
- # Regrid
- ncap2 -O -S bi_interp.nco ${fn} ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
- # Keep only the new variables
- ncks -O -v wsa_sw_less,bsa_sw_less ${drc_in}${fld_out}${var}.${sfx}.regrid.nc \
- ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
- # Rename the new variables, dimensions and attributions
- ncrename -O -d latn,lat -d lonn,lon -v latn,lat -v lonn,lon \
- -v wsa_sw_less,wsa_sw -v bsa_sw_less,bsa_sw -a missing_value,_FillValue \
- ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
-
- echo $sfx done.
-done
-</pre></div>
-<p><strong>bi_interp.nco</strong>
-</p><div class="example">
-<pre class="verbatim">// Bilinear interpolation
-// Included by rgr.sh
-// Online: http://nco.sourceforge.net/nco.html#Regrid-MODIS-Data
-
-defdim("latn",192); // Define new dimension: latitude
-defdim("lonn",288); // Define new dimension: longitude
-latn[$latn] = {90,89.0576 ,88.1152 ,87.1728 ,86.2304 ,85.288 ,\
- 84.3456 ,83.4031 ,82.4607 ,81.5183 ,80.5759 ,79.6335 ,78.6911 ,\
- 77.7487 ,76.8063 ,75.8639 ,74.9215 ,73.9791 ,73.0367 ,72.0942 ,\
- 71.1518 ,70.2094 ,69.267 ,68.3246 ,67.3822 ,66.4398 ,65.4974 ,\
- 64.555 ,63.6126 ,62.6702 ,61.7277 ,60.7853 ,59.8429 ,58.9005 ,\
- 57.9581 ,57.0157 ,56.0733 ,55.1309 ,54.1885 ,53.2461 ,52.3037 ,\
- 51.3613 ,50.4188 ,49.4764 ,48.534 ,47.5916 ,46.6492 ,45.7068 ,\
- 44.7644 ,43.822 ,42.8796 ,41.9372 ,40.9948 ,40.0524 ,39.11 ,\
- 38.1675 ,37.2251 ,36.2827 ,35.3403 ,34.3979 ,33.4555 ,32.5131 ,\
- 31.5707 ,30.6283 ,29.6859 ,28.7435 ,27.8011 ,26.8586 ,25.9162 ,\
- 24.9738 ,24.0314 ,23.089 ,22.1466 ,21.2042 ,20.2618 ,19.3194 ,\
- 18.377 ,17.4346 ,16.4921 ,15.5497 ,14.6073 ,13.6649 ,12.7225 ,\
- 11.7801 ,10.8377 ,9.89529 ,8.95288 ,8.01047 ,7.06806 ,6.12565 ,\
- 5.18325 ,4.24084 ,3.29843 ,2.35602 ,1.41361 ,0.471204,-0.471204,\
- -1.41361,-2.35602,-3.29843,-4.24084,-5.18325,-6.12565,-7.06806,\
- -8.01047,-8.95288,-9.89529,-10.8377,-11.7801,-12.7225,-13.6649,\
- -14.6073,-15.5497,-16.4921,-17.4346,-18.377 ,-19.3194,-20.2618,\
- -21.2042,-22.1466,-23.089 ,-24.0314,-24.9738,-25.9162,-26.8586,\
- -27.8011,-28.7435,-29.6859,-30.6283,-31.5707,-32.5131,-33.4555,\
- -34.3979,-35.3403,-36.2827,-37.2251,-38.1675,-39.11 ,-40.0524,\
- -40.9948,-41.9372,-42.8796,-43.822 ,-44.7644,-45.7068,-46.6492,\
- -47.5916,-48.534 ,-49.4764,-50.4188,-51.3613,-52.3037,-53.2461,\
- -54.1885,-55.1309,-56.0733,-57.0157,-57.9581,-58.9005,-59.8429,\
- -60.7853,-61.7277,-62.6702,-63.6126,-64.555 ,-65.4974,-66.4398,\
- -67.3822,-68.3246,-69.267 ,-70.2094,-71.1518,-72.0942,-73.0367,\
- -73.9791,-74.9215,-75.8639,-76.8063,-77.7487,-78.6911,-79.6335,\
- -80.5759,-81.5183,-82.4607,-83.4031,-84.3456,-85.288,-86.2304,\
- -87.1728,-88.1152,-89.0576,-90}; // Copy of CCSM4 latitude
-lonn[$lonn] = {-178.75,-177.5,-176.25,-175,-173.75,-172.5,-171.25,\
- -170,-168.75,-167.5,-166.25,-165,-163.75,-162.5,-161.25,-160,\
- -158.75,-157.5,-156.25,-155,-153.75,-152.5,-151.25,-150,-148.75,\
- -147.5,-146.25,-145,-143.75,-142.5,-141.25,-140,-138.75,-137.5,\
- -136.25,-135,-133.75,-132.5,-131.25,-130,-128.75,-127.5,-126.25,\
- -125,-123.75,-122.5,-121.25,-120,-118.75,-117.5,-116.25,-115,\
- -113.75,-112.5,-111.25,-110,-108.75,-107.5,-106.25,-105,-103.75,\
- -102.5,-101.25,-100,-98.75,-97.5,-96.25,-95,-93.75,-92.5,-91.25,\
- -90,-88.75,-87.5,-86.25,-85,-83.75,-82.5,-81.25,-80,-78.75,-77.5,\
- -76.25,-75,-73.75,-72.5,-71.25,-70,-68.75,-67.5,-66.25,-65,-63.75,\
- -62.5,-61.25,-60,-58.75,-57.5,-56.25,-55,-53.75,-52.5,-51.25,-50,\
- -48.75,-47.5,-46.25,-45,-43.75,-42.5,-41.25,-40,-38.75,-37.5,\
- -36.25,-35,-33.75,-32.5,-31.25,-30,-28.75,-27.5,-26.25,-25,-23.75,\
- -22.5,-21.25,-20,-18.75,-17.5,-16.25,-15,-13.75,-12.5,-11.25,-10,\
- -8.75,-7.5,-6.25,-5,-3.75,-2.5,-1.25,0,1.25,2.5,3.75,5,6.25,7.5,\
- 8.75,10,11.25,12.5,13.75,15,16.25,17.5,18.75,20,21.25,22.5,23.75,\
- 25,26.25,27.5,28.75,30,31.25,32.5,33.75,35,36.25,37.5,38.75,40,\
- 41.25,42.5,43.75,45,46.25,47.5,48.75,50,51.25,52.5,53.75,55,56.25,\
- 57.5,58.75,60,61.25,62.5,63.75,65,66.25,67.5,68.75,70,71.25,72.5,\
- 73.75,75,76.25,77.5,78.75,80,81.25,82.5,83.75,85,86.25,87.5,88.75,\
- 90,91.25,92.5,93.75,95,96.25,97.5,98.75,100,101.25,102.5,103.75,\
- 105,106.25,107.5,108.75,110,111.25,112.5,113.75,115,116.25,117.5,\
- 118.75,120,121.25,122.5,123.75,125,126.25,127.5,128.75,130,131.25,\
- 132.5,133.75,135,136.25,137.5,138.75,140,141.25,142.5,143.75,145,\
- 146.25,147.5,148.75,150,151.25,152.5,153.75,155,156.25,157.5,\
- 158.75,160,161.25,162.5,163.75,165,166.25,167.5,168.75,170,171.25,\
- 172.5,173.75,175,176.25,177.5,178.75,180}; // Copy of CCSM4 longitude
-
-*out[$time,$latn,$lonn]=0.0; // Output structure
-
-// Bi-linear interpolation
-bsa_sw_less=bilinear_interp_wrap(bsa_sw,out,latn,lonn,lat,lon);
-wsa_sw_less=bilinear_interp_wrap(wsa_sw,out,latn,lonn,lat,lon);
-
-// Add attributions
-latn at units = "degree_north";
-lonn at units = "degree_east";
-latn at long_name = "latitude";
-lonn at long_name = "longitude";
-bsa_sw_less at hdf_name = "Albedo_BSA_shortwave";
-bsa_sw_less at calibrated_nt = 5;
-bsa_sw_less at missing_value = 32767.0;
-bsa_sw_less at units = "albedo, no units";
-bsa_sw_less at long_name = "Global_Albedo_BSA_shortwave";
-wsa_sw_less at hdf_name = "Albedo_WSA_shortwave";
-wsa_sw_less at calibrated_nt = 5;
-wsa_sw_less at missing_value = 32767.0;
-wsa_sw_less at units = "albedo, no units";
-wsa_sw_less at long_name = "Global_Albedo_WSA_shortwave";
-</pre></div>
-
-<hr>
-<a name="Add-Coordinates-to-MODIS-Data"></a>
-<div class="header">
-<p>
-Next: <a href="#Permute-MODIS-Coordinates" accesskey="n" rel="next">Permute MODIS Coordinates</a>, Previous: <a href="#Regrid-MODIS-Data" accesskey="p" rel="prev">Regrid MODIS Data</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Add-Coordinates-to-MODIS-Data-1"></a>
-<h3 class="section">7.6 Add Coordinates to <acronym>MODIS</acronym> Data</h3>
-<a name="index-MODIS-1"></a>
-<a name="index-coordinates-2"></a>
-<p><strong>Main Script</strong>
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-
-#============================================================
-# Example for
-# - regrid (using bi_interp.nco): the spatial resolution of MODIS data
-# is much finer than those of CMIP5 models. In order to compare
-# the two, we can regrid MODIS data to comform to CMIP5.
-# - add coordinates (using coor.nco): there is no coordinate information
-# in MODIS data. We have to add it manually now.
-#
-# Input files:
-# /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
-#
-# Output files:
-# /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
-#
-# Online: http://nco.sourceforge.net/nco.html#Add-Coordinates-to-MODIS-Data
-#
-# Execute this script: bash add_crd.sh
-#============================================================
-
-var=( 'MOD10CM' ) # Variable
-fld_in=( 'snc/nc/' ) # Folder of input files
-drc_in='/media/grele_data/wenshan/modis/' # directory of input files
-
-for fn in $( ls ${drc_in}${fld_in}${var}*.nc ); do # Loop over files
- sfx=$( echo ${fn} | cut -d '/' -f 8 | cut -d '.' -f 2-4 ) # Part of file names
- echo ${sfx}
-
- # Rename dimension names
- ncrename -d YDim_MOD_CMG_Snow_5km,lat -d XDim_MOD_CMG_Snow_5km,lon -O \
- ${drc_in}${fld_in}${var}.${sfx}.nc ${drc_in}${fld_in}${var}.${sfx}.nc
- # Add coordinates
- ncap2 -O -S crd.nco ${drc_in}${fld_in}${var}.${sfx}.nc \
- ${drc_in}${fld_in}${var}.${sfx}.nc
-done
-</pre></div>
-<p><strong>crd.nco</strong>
-</p><div class="example">
-<pre class="verbatim">// Add coordinates to MODIS HDF data
-// Included by add_crd.sh
-// Online: http://nco.sourceforge.net/nco.html#Add-Coordinates-to-MODIS-Data
-
-lon = array(0.f, 0.05, $lon) - 180;
-lat = 90.f- array(0.f, 0.05, $lat);
-</pre></div>
-
-<hr>
-<a name="Permute-MODIS-Coordinates"></a>
-<div class="header">
-<p>
-Previous: <a href="#Add-Coordinates-to-MODIS-Data" accesskey="p" rel="prev">Add Coordinates to MODIS Data</a>, Up: <a href="#CMIP5-Example" accesskey="u" rel="up">CMIP5 Example</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Permute-MODIS-Coordinates-1"></a>
-<h3 class="section">7.7 Permute <acronym>MODIS</acronym> Coordinates</h3>
-<a name="index-coordinates_002c-modifying"></a>
-<p><acronym>MODIS</acronym> orders latitude data from 90°N to
--90°N, and longitude from -180°E to
-180°E.
-However, <acronym>CMIP5</acronym> orders latitude from -90°N to
-90°N, and longitude from 0°E to
-360°E.
-This script changes the <acronym>MODIS</acronym> coordinates to follow the
-<acronym>CMIP5</acronym> convention.
-</p><div class="example">
-<pre class="verbatim">#!/bin/bash
-
-##===========================================================================
-## Example for
-## - permute coordinates: the grid of MODIS is
-## from (-180 degE, 90 degN), the left-up corner, to
-## (180 degE, -90 degN), the right-low corner. However, CMIP5 is
-## from (0 degE, -90 degN) to (360 degE, 90 degN). The script
-## here changes the MODIS grid to CMIP5 grid.
-##
-## Input files:
-## /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
-##
-## Output files:
-## /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
-##
-## Online: http://nco.sourceforge.net/nco.html#Permute-MODIS-Coordinates
-##
-## Execute this script: bash pmt_crd.sh
-##===========================================================================
-
-##---------------------------------------------------------------------------
-## Permute coordinates
-## - Inverse lat from (90,-90) to (-90,90)
-## - Permute lon from (-180,180) to (0,360)
-for fn in $( ls MCD43C3.*.nc ); do # Loop over files
- sfx=$( echo ${fn} | cut -d '.' -f 1-3 ) # Part of file names
- echo ${sfx}
-
- ## Lat
- ncpdq -O -a -lat ${fn} ${fn} # Inverse latitude (NB: there is '-' before 'lat')
-
- ## Lon
- ncks -O --msa -d lon,0.0,180.0 -d lon,-180.0,-1.25 ${fn} ${fn}
-
- ## Add new longitude coordinates
- ncap2 -O -s 'lon=array(0.0,1.25,$lon)' ${fn} ${fn}
-done
-</pre></div>
-
-
-<a name="parallel"></a> <!-- http://nco.sf.net/nco.html#parallel --><hr>
-<a name="Parallel"></a>
-<div class="header">
-<p>
-Next: <a href="#CCSM-Example" accesskey="n" rel="next">CCSM Example</a>, Previous: <a href="#CMIP5-Example" accesskey="p" rel="prev">CMIP5 Example</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="Parallel-1"></a>
-<h2 class="chapter">8 Parallel</h2>
-<a name="index-parallel"></a>
-<p>This section will describe scripting strategies, including the use of
-<acronym>GNU</acronym> Parallel, to <acronym>NCO</acronym>.
-</p><div class="example">
-<pre class="verbatim">ls *historical*.nc | parallel ncks -O -d time,"1950-01-01","2000-01-01" {} 50y/{}
-</pre></div>
-
-<a name="ccsm"></a> <!-- http://nco.sf.net/nco.html#ccsm --><hr>
-<a name="CCSM-Example"></a>
-<div class="header">
-<p>
-Next: <a href="#mybibnode" accesskey="n" rel="next">mybibnode</a>, Previous: <a href="#Parallel" accesskey="p" rel="prev">Parallel</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="CCSM-Example-1"></a>
-<h2 class="chapter">9 CCSM Example</h2>
-<a name="index-CCSM-1"></a>
-
-<p>This chapter illustrates how to use <acronym>NCO</acronym> to
-process and analyze the results of a <acronym>CCSM</acronym> climate simulation.
-</p><div class="example">
-<pre class="verbatim">************************************************************************
-Task 0: Finding input files
-x************************************************************************
-The CCSM model outputs files to a local directory like:
-
-/ptmp/zender/archive/T42x1_40
-
-Each component model has its own subdirectory, e.g.,
-
-/ptmp/zender/archive/T42x1_40/atm
-/ptmp/zender/archive/T42x1_40/cpl
-/ptmp/zender/archive/T42x1_40/ice
-/ptmp/zender/archive/T42x1_40/lnd
-/ptmp/zender/archive/T42x1_40/ocn
-
-within which model output is tagged with the particular model name
-
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-01.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-02.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-03.nc
-...
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-12.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-01.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-02.nc
-...
-
-or
-
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-01.nc
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-02.nc
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-03.nc
-...
-
-************************************************************************
-Task 1: Regional processing
-************************************************************************
-The first task in data processing is often creating seasonal cycles.
-Imagine a 100-year simulation with its 1200 monthly mean files.
-Our goal is to create a single file containing 12 months of data.
-Each month in the output file is the mean of 100 input files.
-
-Normally, we store the "reduced" data in a smaller, local directory.
-
-caseid='T42x1_40'
-#drc_in="${DATA}/archive/${caseid}/atm"
-drc_in="${DATA}/${caseid}"
-drc_out="${DATA}/${caseid}"
-mkdir -p ${drc_out}
-cd ${drc_out}
-
-Method 1: Assume all data in directory applies
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.*-${mm}.nc
-done # end loop over mth
-
-Method 2: Use shell 'globbing' to construct input filenames
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.00??-${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.0100-${mm}.nc
-done # end loop over mth
-
-Method 3: Construct input filename list explicitly
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- fl_lst_in=''
- for yr in {1..100}; do
- yyyy=`printf "%04d" $yr`
- fl_in=${caseid}.cam2.h0.${yyyy}-${mm}.nc
- fl_lst_in="${fl_lst_in} ${caseid}.cam2.h0.${yyyy}-${mm}.nc"
- done # end loop over yr
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc -p ${drc_in} \
- ${fl_lst_in}
-done # end loop over mth
-
-Make sure the output file averages correct input files!
-ncks -M prints global metadata:
-
- ncks -M ${drc_out}/${caseid}_clm01.nc
-
-The input files ncra used to create the climatological monthly mean
-will appear in the global attribute named 'history'.
-
-Use ncrcat to aggregate the climatological monthly means
-
- ncrcat -O -D 1 \
- ${drc_out}/${caseid}_clm??.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Finally, create climatological means for reference.
-The climatological time-mean:
-
- ncra -O -D 1 \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm.nc
-
-The climatological zonal-mean:
-
- ncwa -O -D 1 -a lon \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_x.nc
-
-The climatological time- and spatial-mean:
-
- ncwa -O -D 1 -a lon,lat,time -w gw \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_xyt.nc
-
-This file contains only scalars, e.g., "global mean temperature",
-used for summarizing global results of a climate experiment.
-
-Climatological monthly anomalies = Annual Cycle:
-Subtract climatological mean from climatological monthly means.
-Result is annual cycle, i.e., climate-mean has been removed.
-
- ncbo -O -D 1 -o ${drc_out}/${caseid}_clm_0112_anm.nc \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm_xyt.nc
-
-************************************************************************
-Task 2: Correcting monthly averages
-************************************************************************
-The previous step appoximates all months as being equal, so, e.g.,
-February weighs slightly too much in the climatological mean.
-This approximation can be removed by weighting months appropriately.
-We must add the number of days per month to the monthly mean files.
-First, create a shell variable dpm:
-
-unset dpm # Days per month
-declare -a dpm
-dpm=(0 31 28.25 31 30 31 30 31 31 30 31 30 31) # Allows 1-based indexing
-
-Method 1: Create dpm directly in climatological monthly means
-for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -s "dpm=0.0*date+${dpm[${mth}]}" \
- ${drc_out}/${caseid}_clm${mm}.nc ${drc_out}/${caseid}_clm${mm}.nc
-done # end loop over mth
-
-Method 2: Create dpm by aggregating small files
-for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -v -s "dpm=${dpm[${mth}]}" ~/nco/data/in.nc \
- ${drc_out}/foo_${mm}.nc
-done # end loop over mth
-ncecat -O -D 1 -p ${drc_out} -n 12,2,2 foo_${mm}.nc foo.nc
-ncrename -O -D 1 -d record,time ${drc_out}/foo.nc
-ncatted -O -h \
- -a long_name,dpm,o,c,"Days per month" \
- -a units,dpm,o,c,"days" \
- ${drc_out}/${caseid}_clm_0112.nc
-ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Method 3: Create small netCDF file using ncgen
-cat > foo.cdl << 'EOF'
-netcdf foo {
-dimensions:
- time=unlimited;
-variables:
- float dpm(time);
- dpm:long_name="Days per month";
- dpm:units="days";
-data:
- dpm=31,28.25,31,30,31,30,31,31,30,31,30,31;
-}
-EOF
-ncgen -b -o foo.nc foo.cdl
-ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Another way to get correct monthly weighting is to average daily
-output files, if available.
-
-************************************************************************
-Task 3: Regional processing
-************************************************************************
-Let's say you are interested in examining the California region.
-Hyperslab your dataset to isolate the appropriate latitude/longitudes.
-
-ncks -O -D 1 -d lat,30.0,37.0 -d lon,240.0,270.0 \
- ${drc_out}/${caseid}_clm_0112.nc \
- ${drc_out}/${caseid}_clm_0112_Cal.nc
-
-The dataset is now much smaller!
-To examine particular metrics.
-
-************************************************************************
-Task 4: Accessing data stored remotely
-************************************************************************
-OPeNDAP server examples:
-
-UCI DAP servers:
-ncks -M -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata in.nc
-ncrcat -O -C -D 3 \
- -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata \
- -l /tmp in.nc in.nc ~/foo.nc
-
-Unidata DAP servers:
-ncks -M -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
-ncrcat -O -C -D 3 \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l /tmp in.nc in.nc ~/foo.nc
-
-NOAA DAP servers:
-ncwa -O -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
-pres.sfc.1969.nc ~/foo.nc
-
-LLNL PCMDI IPCC OPeNDAP Data Portal:
-ncks -M -p http://username:password@esgcet.llnl.gov/cgi-bin/dap-cgi.py/ipcc4/sresa1b/ncar_ccsm3_0 pcmdi.ipcc4.ncar_ccsm3_0.sresa1b.run1.atm.mo.xml
-
-Earth System Grid (ESG): http://www.earthsystemgrid.org
-
-caseid='b30.025.ES01'
-CCSM3.0 1% increasing CO2 run, T42_gx1v3, 200 years starting in year 400
-Atmospheric post-processed data, monthly averages, e.g.,
-/data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0449-12.nc
-/data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0599-12.nc
-
-ESG supports password-protected FTP access by registered users
-NCO uses the .netrc file, if present, for password-protected FTP access
-Syntax for accessing single file is, e.g.,
-ncks -O -D 3 \
- -p ftp://climate.llnl.gov/sresa1b/atm/mo/tas/ncar_ccsm3_0/run1 \
- -l /tmp tas_A1.SRESA1B_1.CCSM.atmm.2000-01_cat_2099-12.nc ~/foo.nc
-
-# Average surface air temperature tas for SRESA1B scenario
-# This loop is illustrative and will not work until NCO correctly
-# translates '*' to FTP 'mget' all remote files
-for var in 'tas'; do
-for scn in 'sresa1b'; do
-for mdl in 'cccma_cgcm3_1 cccma_cgcm3_1_t63 cnrm_cm3 csiro_mk3_0 \
-gfdl_cm2_0 gfdl_cm2_1 giss_aom giss_model_e_h giss_model_e_r \
-iap_fgoals1_0_g inmcm3_0 ipsl_cm4 miroc3_2_hires miroc3_2_medres \
-miub_echo_g mpi_echam5 mri_cgcm2_3_2a ncar_ccsm3_0 ncar_pcm1 \
-ukmo_hadcm3 ukmo_hadgem1'; do
-for run in '1'; do
- ncks -R -O -D 3 -p ftp://climate.llnl.gov/${scn}/atm/mo/${var}/${mdl}/run${run} -l ${DATA}/${scn}/atm/mo/${var}/${mdl}/run${run} '*' ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-done # end loop over run
-done # end loop over mdl
-done # end loop over scn
-done # end loop over var
-
-cd sresa1b/atm/mo/tas/ukmo_hadcm3/run1/
-ncks -H -m -v lat,lon,lat_bnds,lon_bnds -M tas_A1.nc | m
-bds -x 096 -y 073 -m 33 -o ${DATA}/data/dst_3.75x2.5.nc # ukmo_hadcm3
-ncview ${DATA}/data/dst_3.75x2.5.nc
-
-# msk_rgn is California mask on ukmo_hadcm3 grid
-# area is correct area weight on ukmo_hadcm3 grid
-ncks -A -v area,msk_rgn ${DATA}/data/dst_3.75x2.5.nc \
-${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/area_msk_ukmo_hadcm3.nc
-
-Template for standardized data:
-${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-e.g., raw data
-${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/tas_A1.nc
-becomes standardized data
-
-Level 0: raw from IPCC site--no changes except for name
- Make symbolic link name match raw data
-Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-ln -s -f tas_A1.nc sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc
-area_msk_ukmo_hadcm3.nc
-
-Level I: Add all variables (not standardized in time)
- to file containing msk_rgn and area
-Template: ${scn}_${mdl}_${run}_${yyyymm}_${yyyymm}.nc
-
-/bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v tas sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v pr sresa1b_ukmo_hadcm3_run1_pr_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
-If already have file then:
-mv sresa1b_ukmo_hadcm3_run1_200101_209911.nc foo.nc
-/bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v tas,pr foo.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
-Level II: Correct # years, months
-Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-ncks -d time,....... file1.nc file2.nc
-ncrcat file2.nc file3.nc sresa1b_ukmo_hadcm3_run1_200001_209912.nc
-
-Level III: Many derived products from level II, e.g.,
-
- A. Global mean timeseries
- ncwa -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy.nc
-
- B. Califoria average timeseries
- ncwa -m msk_rgn -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy_Cal.nc
-</pre></div>
-
-<a name="bibliography"></a> <!-- http://nco.sf.net/nco.html#bibliography -->
-<a name="bib"></a> <!-- http://nco.sf.net/nco.html#bib --><hr>
-<a name="mybibnode"></a>
-<div class="header">
-<p>
-Next: <a href="#General-Index" accesskey="n" rel="next">General Index</a>, Previous: <a href="#CCSM-Example" accesskey="p" rel="prev">CCSM Example</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="References"></a>
-<h2 class="chapter">10 References</h2>
-<ul>
-<li> <a name="ZeM07"></a>[ZeM07]
- Zender, C. S., and H. J. Mangalam (2007), Scaling Properties of Common Statistical Operators for Gridded Datasets, Int. J. High Perform. Comput. Appl., 21(4), 485-498, doi:10.1177/1094342007083802.
-</li><li> <a name="Zen08"></a>[Zen08]
- Zender, C. S. (2008), Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO), Environ. Modell. Softw., 23(10), 1338-1342, doi:10.1016/j.envsoft.2008.03.004.
-</li><li> <a name="WZJ07"></a>[WZJ07]
- Wang, D. L., C. S. Zender, and S. F. Jenks (2007), DAP-enabled Server-side Data Reduction and Analysis, Proceedings of the 23rd AMS Conference on Interactive Information and Processing Systems (IIPS) for Meteorology, Oceanography, and Hydrology, Paper 3B.2, January 14-18, San Antonio, TX. American Meteorological Society, AMS Press, Boston, MA.
-</li><li> <a name="ZMW06"></a>[ZMW06]
- Zender, C. S., H. Mangalam, and D. L. Wang (2006), Improving Scaling Properties of Common Statistical Operators for Gridded Geoscience Datasets, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract IN53B-0827.
-</li><li> <a name="ZeW07"></a>[ZeW07]
- Zender, C. S., and D. L. Wang (2007), High performance distributed data reduction and analysis with the netCDF Operators (NCO), Proceedings of the 23rd AMS Conference on Interactive Information and Processing Systems (IIPS) for Meteorology, Oceanography, and Hydrology, Paper 3B.4, January 14-18, San Antonio, TX. American Meteorological Society, AMS Press, Boston, MA.
-</li><li> <a name="WZJ06"></a>[WZJ06]
- Wang, D. L., C. S. Zender, and S. F. Jenks (2006), Server-side netCDF Data Reduction and Analysis, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract IN53B-0826.
-</li><li> <a name="WZJ073"></a>[WZJ073]
- Wang, D. L., C. S. Zender, and S. F. Jenks (2007), Server-side parallel data reduction and analysis, in Advances in Grid and Pervasive Computing, Second International Conference, GPC 2007, Paris, France, May 2-4, 2007, Proceedings. IEEE Lecture Notes in Computer Science, vol. 4459, edited by C. Cerin and K.-C. Li, pp. 744-750, Springer-Verlag, Berlin/Heidelberg, doi:10.1007/978-3-540-72360-8_67.
-</li><li> <a name="WZJ074"></a>[WZJ074]
- Wang, D. L., C. S. Zender and S. F. Jenks (2007), A System for Scripted Data Analysis at Remote Data Centers, Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract IN11B-0469.
-</li><li> <a name="WZJ081"></a>[WZJ081]
- Wang, D. L., C. S. Zender and S. F. Jenks (2008), Cluster Workflow Execution of Retargeted Data Analysis Scripts, Proceedings of the 8th IEEE Int’l Symposium on Cluster Computing and the Grid (IEEE CCGRID ’08), pp. 449-458, Lyon, France, May 2008.
-</li><li> <a name="WZJ091"></a>[WZJ091]
- Wang, D. L., C. S. Zender, and S. F. Jenks (2009), Efficient Clustered Server-side Data Analysis Workflows using SWAMP, Earth Sci. Inform., 2(3), 141-155, doi:10.1007/s12145-009-0021-z.
-</li><li> <a name="PFT88"></a>[PFT88]
- Press, Flannery, Teukolsky, and Vetterling (1988), Numerical Recipes in C, Cambridge Univ. Press, New York, NY.
-</li></ul>
-
-
-
-<a name="index"></a> <!-- http://nco.sf.net/nco.html#index -->
-<a name="idx"></a> <!-- http://nco.sf.net/nco.html#idx --><hr>
-<a name="General-Index"></a>
-<div class="header">
-<p>
-Previous: <a href="#mybibnode" accesskey="p" rel="prev">mybibnode</a>, Up: <a href="#Top" accesskey="u" rel="up">Top</a> [<a href="#SEC_Contents" title="Table of contents" rel="contents">Contents</a>][<a href="#General-Index" title="Index" rel="index">Index</a>]</p>
-</div>
-<a name="General-Index-1"></a>
-<h2 class="unnumbered">General Index</h2>
-
-<table><tr><th valign="top">Jump to: </th><td><a class="summary-letter" href="#General-Index_cp_symbol-1"><b>"</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-2"><b>#</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-3"><b>$</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-4"><b>%</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-5"><b>'</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-6"><b>*</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-7"><b>+</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-8"><b>-</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-9"><b>.</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-10"><b>/</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-11"><b>0</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-12"><b>3</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-13"><b>6</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-14"><b>:</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-15"><b>;</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-16"><b><</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-17"><b>?</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-18"><b>@</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-19"><b>[</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-20"><b>\</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-21"><b>^</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-22"><b>_</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_symbol-23"><b>|</b></a>
-
-<br>
-<a class="summary-letter" href="#General-Index_cp_letter-A"><b>A</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-B"><b>B</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-C"><b>C</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-D"><b>D</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-E"><b>E</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-F"><b>F</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-G"><b>G</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-H"><b>H</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-I"><b>I</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-J"><b>J</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-K"><b>K</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-L"><b>L</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-M"><b>M</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-N"><b>N</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-O"><b>O</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-P"><b>P</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Q"><b>Q</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-R"><b>R</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-S"><b>S</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-T"><b>T</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-U"><b>U</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-V"><b>V</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-W"><b>W</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-X"><b>X</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Y"><b>Y</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Z"><b>Z</b></a>
-
-</td></tr></table>
-<table class="index-cp" border="0">
-<tr><td></td><th align="left">Index Entry</th><td> </td><th align="left"> Section</th></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-1">"</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0022-_0028double-quote_0029"><code>"</code> (double quote)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-2">#</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0023include"><code>#include</code></a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-3">$</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0024-_0028wildcard-character_0029"><code>$</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-4">%</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0025-_0028modulus_0029"><code>%</code> (modulus)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-5">'</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0027-_0028end-quote_0029"><code>'</code> (end quote)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-6">*</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002a"><code>*</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002a-_0028filename-expansion_0029"><code>*</code> (filename expansion)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002a-_0028multiplication_0029"><code>*</code> (multiplication)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002a-_0028wildcard-character_0029"><code>*</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-7">+</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002b"><code>+</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002b-_0028addition_0029"><code>+</code> (addition)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002b-_0028wildcard-character_0029"><code>+</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-8">-</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d"><code>-</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d-_0028subtraction_0029"><code>-</code> (subtraction)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d3"><code>--3</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d4"><code>--4</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d5"><code>--5</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d6"><code>--6</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d64bit"><code>--64bit</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002d7"><code>--7</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dabc"><code>--abc</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dalphabetize"><code>--alphabetize</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dapn"><code>--apn</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dapn-1"><code>--apn</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dapn-2"><code>--apn</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dappend"><code>--append</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dappend-1"><code>--append</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dappend-2"><code>--append</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dauxiliary"><code>--auxiliary</code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dauxiliary-lon_005fmin_002clon_005fmax_002clat_005fmin_002clat_005fmax"><code>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dbfr_005fsz_005fhnt"><code>--bfr_sz_hnt</code></a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dbinary"><code>--binary</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dbnr"><code>--bnr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcdl"><code>--cdl</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcell_005fmethods"><code>--cell_methods</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fbyte"><code>--chunk_byte</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fdimension"><code>--chunk_dimension</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fmap"><code>--chunk_map</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fmin"><code>--chunk_min</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fpolicy"><code>--chunk_policy</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dchunk_005fscalar"><code>--chunk_scalar</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcll_005fmth"><code>--cll_mth</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fbyt"><code>--cnk_byt</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fdmn"><code>--cnk_dmn</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fmap"><code>--cnk_map</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fmap-cnk_005fmap"><code>--cnk_map <var>cnk_map</var></code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fmin"><code>--cnk_min</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fplc"><code>--cnk_plc</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcnk_005fscl"><code>--cnk_scl</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcoords"><code>--coords</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcoords-1"><code>--coords</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcrd"><code>--crd</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcrd-1"><code>--crd</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcreate_005fram"><code>--create_ram</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dcreate_005fram-1"><code>--create_ram</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddata"><code>--data</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddbg_005flvl-debug_002dlevel"><code>--dbg_lvl <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddbg_005flvl-debug_002dlevel-1"><code>--dbg_lvl <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddbg_005flvl-debug_002dlevel-2"><code>--dbg_lvl <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddbl"><code>--dbl</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddebug_002dlevel-debug_002dlevel"><code>--debug-level <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddebug_002dlevel-debug_002dlevel-1"><code>--debug-level <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddeflate"><code>--deflate</code></a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddfl_005flvl"><code>--dfl_lvl</code></a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002c_005bsubcycle_005d"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Wrapped-Coordinates">Wrapped Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddimension-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddiskless_005fall"><code>--diskless_all</code></a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddiskless_005fall-1"><code>--diskless_all</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002csubcycle_005d"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],<var>subcycle</var>]</code></a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Wrapped-Coordinates">Wrapped Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002ddmn-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002densemble_005ffile"><code>--ensemble_file</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002densemble_005fgroup"><code>--ensemble_group</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002densemble_005fsuffix"><code>--ensemble_suffix</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dexclude"><code>--exclude</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dexclude-1"><code>--exclude</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfile_005fformat"><code>--file_format</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfile_005flist"><code>--file_list</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfix_005frec_005fdmn-all"><code>--fix_rec_dmn all</code></a>:</td><td> </td><td valign="top"><a href="#Autoconversion">Autoconversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfix_005frec_005fdmn-dim"><code>--fix_rec_dmn <var>dim</var></code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dflt"><code>--flt</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfl_005fbnr"><code>--fl_bnr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfl_005ffmt"><code>--fl_fmt</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfl_005flst_005fin"><code>--fl_lst_in</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfl_005fout-fl_005fout"><code>--fl_out <var>fl_out</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfl_005fspt"><code>--fl_spt</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfnc_005ftbl"><code>--fnc_tbl</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dfortran"><code>--fortran</code></a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgag"><samp>--gag</samp></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgag-1"><samp>--gag</samp></a>:</td><td> </td><td valign="top"><a href="#Combine-Files">Combine Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dglb_005fmtd_005fspp"><code>--glb_mtd_spp</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgpe-gpe_005fdsc"><code>--gpe <var>gpe_dsc</var></code></a>:</td><td> </td><td valign="top"><a href="#Group-Path-Editing">Group Path Editing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgroup-grp"><code>--group <var>grp</var></code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgrp-grp"><code>--grp <var>grp</var></code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgrp_005fxtr_005fvar_005fxcl"><code>--grp_xtr_var_xcl</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dgxvx"><code>--gxvx</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhdf4">‘<samp>--hdf4</samp>’</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhdf_005funpack"><code>--hdf_unpack</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhdf_005fupk"><code>--hdf_upk</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhdn"><code>--hdn</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhdr_005fpad-hdr_005fpad"><code>--hdr_pad <var>hdr_pad</var></code></a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dheader_005fpad-hdr_005fpad"><code>--header_pad <var>hdr_pad</var></code></a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhidden"><code>--hidden</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhieronymus"><code>--hieronymus</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhistory"><code>--history</code></a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dhst"><code>--hst</code></a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dintersection"><code>--intersection</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dlcl-output_002dpath"><code>--lcl <var>output-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dlocal-output_002dpath"><code>--local <var>output-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmap-cnk_005fmap"><code>--map <var>cnk_map</var></code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmap-pck_005fmap"><code>--map <var>pck_map</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_002dvalue-mask_005fval"><code>--mask-value <var>mask_val</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_002dvariable-mask_005fvar"><code>--mask-variable <var>mask_var</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_005fcomparator-mask_005fcomp"><code>--mask_comparator <var>mask_comp</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_005fcondition-mask_005fcond"><code>--mask_condition <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_005fcondition-mask_005fcond-1"><code>--mask_condition <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_005fvalue-mask_005fval"><code>--mask_value <var>mask_val</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmask_005fvariable-mask_005fvar"><code>--mask_variable <var>mask_var</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmd5_005fdgs"><code>--md5_dgs</code></a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmd5_005fdigest"><code>--md5_digest</code></a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmd5_005fwrite_005fattribute"><code>--md5_write_attribute</code></a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmd5_005fwrt_005fatt"><code>--md5_wrt_att</code></a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dMetadata"><code>--Metadata</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmetadata"><code>--metadata</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmk_005frec_005fdmn-dim"><code>--mk_rec_dmn <var>dim</var></code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmk_005frec_005fdmn-dim-1"><code>--mk_rec_dmn <var>dim</var></code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmrd"><code>--mrd</code></a>:</td><td> </td><td valign="top"><a href="#Multiple-Record-Dimensions">Multiple Record Dimensions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmro"><code>--mro</code></a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsa"><code>--msa</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsa_005fuser_005forder"><code>--msa_user_order</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsa_005fusr_005frdr"><code>--msa_usr_rdr</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fcmp_005ftyp-mask_005fcomp"><code>--msk_cmp_typ <var>mask_comp</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fcnd-mask_005fcond"><code>--msk_cnd <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fcnd_005fsng-mask_005fcond"><code>--msk_cnd_sng <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fnm-mask_005fvar"><code>--msk_nm <var>mask_var</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fval-mask_005fval"><code>--msk_val <var>mask_val</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmsk_005fvar-mask_005fvar"><code>--msk_var <var>mask_var</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dMtd"><code>--Mtd</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmtd"><code>--mtd</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dmultiple_005frecord_005fdimensions"><code>--multiple_record_dimensions</code></a>:</td><td> </td><td valign="top"><a href="#Multiple-Record-Dimensions">Multiple Record Dimensions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dncml"><code>--ncml</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnetcdf4"><code>--netcdf4</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnintap-loop"><code>--nintap <var>loop</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_002dblank"><code>--no-blank</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_002dcoords"><code>--no-coords</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_002dcoords-1"><code>--no-coords</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_002dcrd"><code>--no-crd</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_002dcrd-1"><code>--no-crd</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnoblank"><code>--noblank</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fblank"><code>--no_blank</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fblank-1"><code>--no_blank</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fcell_005fmethods"><code>--no_cell_methods</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fcll_005fmth"><code>--no_cll_mth</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fdmn_005fvar_005fnm"><code>--no_dmn_var_nm</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fdmn_005fvar_005fnm-1"><code>--no_dmn_var_nm</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fnm_005fprn"><code>--no_nm_prn</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005fnm_005fprn-1"><code>--no_nm_prn</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005frec_005fdmn-dim"><code>--no_rec_dmn <var>dim</var></code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005ftmp_005ffl"><code>--no_tmp_fl</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dno_005ftmp_005ffl-1"><code>--no_tmp_fl</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnsm_005ffl"><code>--nsm_fl</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnsm_005fgrp"><code>--nsm_grp</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnsm_005fsfx"><code>--nsm_sfx</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dnsx"><code>--nsx</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002domp_005fnum_005fthreads-thr_005fnbr"><code>--omp_num_threads <var>thr_nbr</var></code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dopen_005fram"><code>--open_ram</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dopen_005fram-1"><code>--open_ram</code></a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dopen_005fram-2"><code>--open_ram</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002doperation-op_005ftyp"><code>--operation <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002doperation-op_005ftyp-1"><code>--operation <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005frlt-mask_005fcomp"><code>--op_rlt <var>mask_comp</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005ftyp-op_005ftyp"><code>--op_typ <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dop_005ftyp-op_005ftyp-1"><code>--op_typ <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dorphan_005fdimensions"><code>--orphan_dimensions</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002doutput-fl_005fout"><code>--output <var>fl_out</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002doverwrite"><code>--overwrite</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002doverwrite-1"><code>--overwrite</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dovr"><code>--ovr</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dovr-1"><code>--ovr</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpack_005fpolicy-pck_005fplc"><code>--pack_policy <var>pck_plc</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpath-input_002dpath"><code>--path <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpath-input_002dpath-1"><code>--path <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpck_005fmap-pck_005fmap"><code>--pck_map <var>pck_map</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpck_005fplc-pck_005fplc"><code>--pck_plc <var>pck_plc</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dppc"><code>--ppc</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dprecision_005fpreserving_005fcompression"><code>--precision_preserving_compression</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dprint"><code>--print</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dprn"><code>--prn</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dprn_005ffnc_005ftbl"><code>--prn_fnc_tbl</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpseudonym"><code>--pseudonym</code></a>:</td><td> </td><td valign="top"><a href="#Symbolic-Links">Symbolic Links</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpth-input_002dpath"><code>--pth <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dpth-input_002dpath-1"><code>--pth <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dquantize"><code>--quantize</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dquench"><code>--quench</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dquiet"><code>--quiet</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dquiet-1"><code>--quiet</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drad"><code>--rad</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dram_005fall"><code>--ram_all</code></a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dram_005fall-1"><code>--ram_all</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drcd_005fnm-ulm_005fnm">‘<samp>--rcd_nm <var>ulm_nm</var></samp>’</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drecord_005fappend"><code>--record_append</code></a>:</td><td> </td><td valign="top"><a href="#Record-Appending">Record Appending</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drec_005fapn"><code>--rec_apn</code></a>:</td><td> </td><td valign="top"><a href="#Record-Appending">Record Appending</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dretain"><code>--retain</code></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dretain_005fall_005fdimensions"><code>--retain_all_dimensions</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drevision"><code>--revision</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drevision-1"><code>--revision</code></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drph_005fdmn"><code>--rph_dmn</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drth_005fdbl"><code>--rth_dbl</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drth_005fflt"><code>--rth_flt</code></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002drtn"><code>--rtn</code></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dscr"><code>--scr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dscript"><code>--script</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dscript_002dfile"><code>--script-file</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dsecret"><code>--secret</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dsng_005ffmt"><code>--sng_fmt</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dsng_005ffmt-1"><code>--sng_fmt</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dspt"><code>--spt</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dssh"><code>--ssh</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dstring"><code>--string</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dstring-1"><code>--string</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dthreads-thr_005fnbr"><code>--threads <var>thr_nbr</var></code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dthr_005fnbr-thr_005fnbr"><code>--thr_nbr <var>thr_nbr</var></code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dulm_005fnm-ulm_005fnm">‘<samp>--ulm_nm <var>ulm_nm</var></samp>’</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunion"><code>--union</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunion-1"><code>--union</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunits"><code>--units</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunn"><code>--unn</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunn-1"><code>--unn</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dunpack"><code>--unpack</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dupk"><code>--upk</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvariable-var"><code>--variable <var>var</var></code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvariable-var-1"><code>--variable <var>var</var></code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvar_005fval"><code>--var_val</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvar_005fval-1"><code>--var_val</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dversion"><code>--version</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dversion-1"><code>--version</code></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvrs"><code>--vrs</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dvrs-1"><code>--vrs</code></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dweight-weight"><code>--weight <var>weight</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dweight-wgt1_005b_002cwgt2_005d"><code>--weight <var>wgt1</var>[,<var>wgt2</var>]</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dwgt_005fvar-weight"><code>--wgt_var <var>weight</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dwgt_005fvar-wgt1_005b_002cwgt2_005d"><code>--wgt_var <var>wgt1</var>[,<var>wgt2</var>]</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dwrite_005ftmp_005ffl"><code>--write_tmp_fl</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dwrt_005ftmp_005ffl"><code>--wrt_tmp_fl</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxcl"><code>--xcl</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxcl-1"><code>--xcl</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxml"><code>--xml</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxml_005fno_005flocation"><code>--xml_no_location</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxml_005fspr_005fchr"><code>--xml_spr_chr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d_002dxml_005fspr_005fnmr"><code>--xml_spr_nmr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d0"><code>-0</code></a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d3"><code>-3</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d3-1"><code>-3</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d4"><code>-4</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d4-1"><code>-4</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d5"><code>-5</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d5-1"><code>-5</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d6"><code>-6</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002d7"><code>-7</code></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dA"><code>-A</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dA-1"><code>-A</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002da"><code>-a</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002da-1"><code>-a</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dA-2"><code>-A</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dA-3">‘<samp>-A</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002db">‘<samp>-b</samp>’</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002db-1">‘<samp>-b</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002db-2"><code>-b</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dB-mask_005fcond"><code>-B <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dB-mask_005fcond-1"><code>-B <var>mask_cond</var></code></a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dC"><code>-C</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dc"><code>-c</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dC-1"><code>-C</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dc-1"><code>-c</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dC-2"><code>-C</code></a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dD"><code>-D</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dD-debug_002dlevel"><code>-D <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dD-debug_002dlevel-1"><code>-D <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dD-debug_002dlevel-2"><code>-D <var>debug-level</var></code></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_002c_005bmax_005d_002cstride"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_002c_005bmax_005d_002c_005bstride_005d_002c_005bsubcycle_005d"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-1"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-2"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#Wrapped-Coordinates">Wrapped Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005b_002c_005bstride_005d_005d_005d-3"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dd-dim_002c_005bmin_005d_005b_002c_005bmax_005d_005d"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>]]</code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dF"><code>-F</code></a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002df"><code>-f</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dG-gpe_005fdsc"><code>-G <var>gpe_dsc</var></code></a>:</td><td> </td><td valign="top"><a href="#Group-Path-Editing">Group Path Editing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dg-grp"><code>-g <var>grp</var></code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dh"><code>-h</code></a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dH"><code>-H</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dh-1"><code>-h</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dH-1"><code>-H</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dI"><code>-I</code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dL"><code>-L</code></a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dl-output_002dpath"><code>-l <var>output-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dl-output_002dpath-1"><code>-l <var>output-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dM"><code>-M</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dM-1"><code>-M</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dM-2"><code>-M</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dm"><code>-m</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dM-cnk_005fmap"><code>-M <var>cnk_map</var></code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dm-mask_005fvar"><code>-m <var>mask_var</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dM-pck_005fmap"><code>-M <var>pck_map</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dN"><code>-N</code></a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dn-loop"><code>-n <var>loop</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dn-loop-1"><code>-n <var>loop</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dn-loop-2"><code>-n <var>loop</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dO"><code>-O</code></a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dO-1"><code>-O</code></a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002do-fl_005fout"><code>-o <var>fl_out</var></code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002do-fl_005fout-1"><code>-o <var>fl_out</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dP"><code>-P</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dp-input_002dpath"><code>-p <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dp-input_002dpath-1"><code>-p <var>input-path</var></code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dP-pck_005fplc"><code>-P <var>pck_plc</var></code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dQ"><code>-Q</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dq"><code>-q</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dQ-1"><code>-Q</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dr"><code>-r</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dr-1"><code>-r</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dR"><code>-R</code></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dr-2"><code>-r</code></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002ds"><code>-s</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002ds-1"><code>-s</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dt-thr_005fnbr"><code>-t <var>thr_nbr</var></code></a>:</td><td> </td><td valign="top"><a href="#Single-and-Multi_002dfile-Operators">Single and Multi-file Operators</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dt-thr_005fnbr-1"><code>-t <var>thr_nbr</var></code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002du"><code>-u</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dU"><code>-U</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002du-ulm_005fnm">‘<samp>-u <var>ulm_nm</var></samp>’</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dV"><code>-V</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dV-1"><code>-V</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dv">‘<samp>-v</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dv-var"><code>-v <var>var</var></code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dv-var-1"><code>-v <var>var</var></code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dw-weight"><code>-w <var>weight</var></code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dw-wgt1_005b_002cwgt2_005d"><code>-w <var>wgt1</var>[,<var>wgt2</var>]</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dx"><code>-x</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dX"><code>-X</code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dx-1"><code>-x</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dX-lon_005fmin_002clon_005fmax_002clat_005fmin_002clat_005fmax"><code>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dy-op_005ftyp"><code>-y <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002dy-op_005ftyp-1"><code>-y <var>op_typ</var></code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-9">.</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002e"><kbd>.</kbd></a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002e-_0028wildcard-character_0029"><code>.</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002ebashrc"><samp>.bashrc</samp></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002enetrc"><samp>.netrc</samp></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002erhosts"><samp>.rhosts</samp></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-10">/</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002f"><code>/</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002f-_0028division_0029"><code>/</code> (division)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002f_002a_002e_002e_002e_002a_002f-_0028comment_0029"><code>/*...*/</code> (comment)</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_002f_002f-_0028comment_0029"><code>//</code> (comment)</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-11">0</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-0-_0028NUL_0029"><code>0</code> (NUL)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-12">3</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-32_002dbit-offset-file-format">32-bit offset file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-13">6</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-64_002dbit-offset-file-format">64-bit offset file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-64BIT-files"><code>64BIT</code> files</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-14">:</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003a-_0028separator-character_0029"><code>:</code> (separator character)</a>:</td><td> </td><td valign="top"><a href="#Flattening-Groups">Flattening Groups</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-15">;</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003b-_0028end-of-statement_0029"><code>;</code> (end of statement)</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-16"><</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003carpa_002fnameser_002eh_003e"><code><samp><arpa/nameser.h></samp></code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003cresolv_002eh_003e"><code><samp><resolv.h></samp></code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-17">?</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003f-_0028filename-expansion_0029"><code>?</code> (filename expansion)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003f-_0028question-mark_0029"><code>?</code> (question mark)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_003f-_0028wildcard-character_0029"><code>?</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-18">@</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0040-_0028attribute_0029"><code>@</code> (attribute)</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_0040-_0028separator-character_0029"><code>@</code> (separator character)</a>:</td><td> </td><td valign="top"><a href="#Flattening-Groups">Flattening Groups</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-19">[</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005b_005d-_0028array-delimiters_0029"><code>[]</code> (array delimiters)</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-20">\</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c-_0028backslash_0029"><code>\</code> (backslash)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c_0022-_0028protected-double-quote_0029"><code>\"</code> (protected double quote)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c_0027-_0028protected-end-quote_0029"><code>\'</code> (protected end quote)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c_003f-_0028protected-question-mark_0029"><code>\?</code> (protected question mark)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005ca-_0028ASCII-BEL_002c-bell_0029"><code>\a</code> (<acronym>ASCII</acronym> BEL, bell)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cb-_0028ASCII-BS_002c-backspace_0029"><code>\b</code> (<acronym>ASCII</acronym> BS, backspace)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cf-_0028ASCII-FF_002c-formfeed_0029"><code>\f</code> (<acronym>ASCII</acronym> FF, formfeed)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cn-_0028ASCII-LF_002c-linefeed_0029"><code>\n</code> (<acronym>ASCII</acronym> LF, linefeed)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cn-_0028linefeed_0029"><code>\n</code> (linefeed)</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cr-_0028ASCII-CR_002c-carriage-return_0029"><code>\r</code> (<acronym>ASCII</acronym> CR, carriage return)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005ct-_0028ASCII-HT_002c-horizontal-tab_0029"><code>\t</code> (<acronym>ASCII</acronym> HT, horizontal tab)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005ct-_0028horizontal-tab_0029"><code>\t</code> (horizontal tab)</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005cv-_0028ASCII-VT_002c-vertical-tab_0029"><code>\v</code> (<acronym>ASCII</acronym> VT, vertical tab)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c_005c-_0028ASCII-_005c_002c-backslash_0029"><code>\\</code> (<acronym>ASCII</acronym> \, backslash)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005c_005c-_0028protected-backslash_0029"><code>\\</code> (protected backslash)</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-21">^</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005e-_0028power_0029"><code>^</code> (power)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005e-_0028wildcard-character_0029"><code>^</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-22">_</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fChunkSizes"><code>_ChunkSizes</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fDeflateLevel"><code>_DeflateLevel</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fEndianness"><code>_Endianness</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-1"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-2"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-3"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-4"><var>_FillValue</var></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-5"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFillValue-6"><code>_FillValue</code></a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFletcher32"><code>_Fletcher32</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fFormat"><code>_Format</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fNOFILL"><code>_NOFILL</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fShuffle"><code>_Shuffle</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fSOURCE_005fFORMAT"><code>_SOURCE_FORMAT</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_005fStorage"><code>_Storage</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_symbol-23">|</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-_007c-_0028wildcard-character_0029"><code>|</code> (wildcard character)</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-A">A</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-abs"><var>abs</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-absolute-value">absolute value</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-acos"><var>acos</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-acosh"><var>acosh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add"><code>add</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-adding-data">adding data</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-adding-data-1">adding data</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-addition">addition</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-addition-1">addition</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-addition-2">addition</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add_005foffset"><var>add_offset</var></a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add_005foffset-1"><code>add_offset</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add_005foffset-2"><code>add_offset</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add_005foffset-3"><code>add_offset</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-add_005foffset-4"><code>add_offset</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-aggregation">aggregation</a>:</td><td> </td><td valign="top"><a href="#Combine-Files">Combine Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Aleksandar-Jelenak">Aleksandar Jelenak</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Alexander-Hansen">Alexander Hansen</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alias"><code>alias</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alias-1">alias</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alias-2"><code>alias</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-all">‘<samp>all</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alphabetization">alphabetization</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alphabetize-output">alphabetize output</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-alternate-invocations">alternate invocations</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-anchor">anchor</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-anchoring">anchoring</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ancillary-variables-convention">ancillary variables convention</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ancillary_005fvariables-attribute"><code>ancillary_variables</code> attribute</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ancillary_005fvariables-attribute-1"><code>ancillary_variables</code> attribute</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Andrea-Cimatoribus">Andrea Cimatoribus</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Andrew-Wittenberg">Andrew Wittenberg</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-annual-average">annual average</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-annual-average-from-daily-data">annual average from daily data</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-annual-average-from-monthly-data">annual average from monthly data</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-anomalies">anomalies</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-anomalies-1">anomalies</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-anomalies-2">anomalies</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ANSI"><acronym>ANSI</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ANSI-C"><code>ANSI C</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-data">appending data</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-data-1">appending data</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-to-files">appending to files</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-to-files-1">appending to files</a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-to-files-2">appending to files</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-variables">appending variables</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-variables-1">appending variables</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-variables-2">appending variables</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-appending-variables-3">appending variables</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-AR4"><acronym>AR4</acronym></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arccosine-function">arccosine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arcsine-function">arcsine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arctangent-function">arctangent function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-area"><code>area</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-area_002daveraging">area-averaging</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arithmetic-operators">arithmetic operators</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arithmetic-operators-1">arithmetic operators</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arithmetic-operators-2">arithmetic operators</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arithmetic-processor">arithmetic processor</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ARM-conventions"><acronym>ARM</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ARM-conventions-1">ARM conventions</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-array"><code>array</code></a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-array-function"><code>array</code> function</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-array-indexing">array indexing</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-array-storage">array storage</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-array-syntax">array syntax</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arrays">arrays</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-arrival-value">arrival value</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ASCII"><acronym>ASCII</acronym></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ASCII-1"><acronym>ASCII</acronym></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-asin"><var>asin</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-asinh"><var>asinh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-asort"><code>asort</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-assignment-statement">assignment statement</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-asynchronous-file-access">asynchronous file access</a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-atan"><var>atan</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-atanh"><var>atanh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute-inheritance">attribute inheritance</a>:</td><td> </td><td valign="top"><a href="#Attributes">Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute-names">attribute names</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute-names-1">attribute names</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute-propagation">attribute propagation</a>:</td><td> </td><td valign="top"><a href="#Attributes">Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute-syntax">attribute syntax</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attribute_002c-units">attribute, <code>units</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes">attributes</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-appending">attributes, appending</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-creating">attributes, creating</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-deleting">attributes, deleting</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-editing">attributes, editing</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-editing-1">attributes, editing</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-editing-2">attributes, editing</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global">attributes, global</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-1">attributes, global</a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-2">attributes, global</a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-3">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-4">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-5">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-6">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-7">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-8">attributes, global</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-9">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-global-10">attributes, global</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-modifying">attributes, modifying</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-modifying-1">attributes, modifying</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-modifying-2">attributes, modifying</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-overwriting">attributes, overwriting</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-overwriting-1">attributes, overwriting</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributes_002c-overwriting-2">attributes, overwriting</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-attributesncap2">attributes<code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Attributes">Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-autoconf"><code>autoconf</code></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-autoconversion">autoconversion</a>:</td><td> </td><td valign="top"><a href="#Autoconversion">Autoconversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-automagic">automagic</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-automagic-1">automagic</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-automatic-type-conversion">automatic type conversion</a>:</td><td> </td><td valign="top"><a href="#Type-Conversion">Type Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-automatic-type-conversion-1">automatic type conversion</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-auxiliary-coordinates">auxiliary coordinates</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average">average</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-1">average</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-2">average</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-3">average</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-4">average</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-5">average</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-6">average</a>:</td><td> </td><td valign="top"><a href="#One-time-point-one-file">One time point one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-7">average</a>:</td><td> </td><td valign="top"><a href="#Global-Distribution-of-Long_002dterm-Average">Global Distribution of Long-term Average</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-8">average</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-average-9">average</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-averaging-data">averaging data</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-averaging-data-1">averaging data</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-averaging-data-2">averaging data</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-averaging-data-3">averaging data</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-avg"><code>avg</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-avg_0028_0029">avg()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-avgsqr"><code>avgsqr</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-B">B</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Barry-deFreese">Barry deFreese</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-base_005ftime"><code>base_time</code></a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bash"><code>bash</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bash-1"><code>bash</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bash-shell">Bash shell</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bash-Shell">Bash Shell</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bash-shell-1">Bash shell</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-batch-mode">batch mode</a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-beer">beer</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-benchmarks">benchmarks</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bessel-function">Bessel function</a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bilinear-interpolation">bilinear interpolation</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bill-Kocik">Bill Kocik</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-binary-format">binary format</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-binary-operations">binary operations</a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-binary-operations-1">binary operations</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-binary-Operators">binary Operators</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bitmask">bitmask</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-blank">blank</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-blocksize">blocksize</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bounds-attribute"><code>bounds</code> attribute</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bounds-attribute-1"><code>bounds</code> attribute</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bounds-attribute-2"><code>bounds</code> attribute</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bounds-convention">bounds convention</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bourne-Shell">Bourne Shell</a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Bourne-Shell-1">Bourne Shell</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Brian-Mays">Brian Mays</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting">broadcasting</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-groups">broadcasting groups</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-groups-1">broadcasting groups</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-groups-2">broadcasting groups</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-variables">broadcasting variables</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-variables-1">broadcasting variables</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-variables-2">broadcasting variables</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-variables-3">broadcasting variables</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-broadcasting-variables-4">broadcasting variables</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-BSD"><code>BSD</code></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Buffer-sizes">Buffer sizes</a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-buffering">buffering</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bugs_002c-reporting">bugs, reporting</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Burrows_002dWheeler-algorithm">Burrows-Wheeler algorithm</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-byte_0028_0029">byte()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-bzip2"><code>bzip2</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-C">C</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-index-convention">C index convention</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language">C language</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-1">C language</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-2">C language</a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-3">C language</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-4">C language</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-5">C language</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-6">C language</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-language-7">C language</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-Shell">C Shell</a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C-Shell-1">C Shell</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-c_002b_002b"><code>c++</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C_002b_002b">C++</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C89">C89</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C89-1">C89</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C99">C99</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C99-1">C99</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C99-2">C99</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C99-3">C99</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CAM"><acronym>CAM</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CAM3"><acronym>CAM3</acronym></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CC"><code>CC</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cc"><code>cc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCM-Processor"><acronym>CCM</acronym> Processor</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCM-Processor-1"><acronym>CCM</acronym> Processor</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCM-Processor-2"><acronym>CCM</acronym> Processor</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCSM"><acronym>CCSM</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCSM-1">CCSM</a>:</td><td> </td><td valign="top"><a href="#CCSM-Example">CCSM Example</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CCSM-conventions"><acronym>CCSM</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CDL"><acronym>CDL</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ceil"><var>ceil</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ceiling-function">ceiling function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cell-methods-convention">cell methods convention</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cell_002dbased-grids">cell-based grids</a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cell_005fmethods"><code>cell_methods</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-compliance-checker"><acronym>CF</acronym> compliance checker</a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-1"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-2"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-3"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-4"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-5"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CF-conventions-6"><acronym>CF</acronym> conventions</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cfchecker"><code>cfchecker</code></a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-change_005fmiss_0028_0029"><code>change_miss()</code></a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-char_0028_0029">char()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-characters_002c-special">characters, special</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Charlie-Zender">Charlie Zender</a>:</td><td> </td><td valign="top"><a href="#Foreword">Foreword</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Charlie-Zender-1">Charlie Zender</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chocolate">chocolate</a>:</td><td> </td><td valign="top"><a href="#Contributing">Contributing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Chris-Barker">Chris Barker</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking">chunking</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking-1">chunking</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking-2">chunking</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking-map">chunking map</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking-map-1">chunking map</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunking-policy">chunking policy</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-chunksize">chunksize</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-citation">citation</a>:</td><td> </td><td valign="top"><a href="#Citation">Citation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-clang"><code>clang</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CLASSIC-files"><code>CLASSIC</code> files</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-client_002dserver">client-server</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Climate-and-Forecast-Metadata-Convention">Climate and Forecast Metadata Convention</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model">climate model</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-1">climate model</a>:</td><td> </td><td valign="top"><a href="#Climate-Model-Paradigm">Climate Model Paradigm</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-2">climate model</a>:</td><td> </td><td valign="top"><a href="#Concatenation">Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-3">climate model</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-4">climate model</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-5">climate model</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-climate-model-6">climate model</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-clipping-operators">clipping operators</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CMIP"><acronym>CMIP</acronym></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CMIP-1"><acronym>CMIP</acronym></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-CMIP5"><acronym>CMIP5</acronym></a>:</td><td> </td><td valign="top"><a href="#CMIP5-Example">CMIP5 Example</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fall">‘<samp>cnk_all</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fdmn">‘<samp>cnk_dmn</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fg2d">‘<samp>cnk_g2d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fg3d">‘<samp>cnk_g3d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005flfp">‘<samp>cnk_lfp</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fmap"><var>cnk_map</var></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fnc4">‘<samp>cnk_nc4</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fprd">‘<samp>cnk_prd</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fr1d">‘<samp>cnk_r1d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005frd1">‘<samp>cnk_rd1</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005frew">‘<samp>cnk_rew</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fscl">‘<samp>cnk_scl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fxpl">‘<samp>cnk_xpl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fxst">‘<samp>cnk_xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cnk_005fxst-1">‘<samp>cnk_xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Comeau">Comeau</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-command-line-options">command line options</a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-command-line-switches">command line switches</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-command-line-switches-1">command line switches</a>:</td><td> </td><td valign="top"><a href="#Shared-features">Shared features</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-command-line-switches-2">command line switches</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-command-line-switches-3">command line switches</a>:</td><td> </td><td valign="top"><a href="#Reference-Manual">Reference Manual</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-comments">comments</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-como"><code>como</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Compaq">Compaq</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-comparator">comparator</a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-compatability">compatability</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-compilers">compilers</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-complementary-error-function">complementary error function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-compliance-checker">compliance checker</a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-compression">compression</a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-compression-1">compression</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-concatenation">concatenation</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-concatenation-1">concatenation</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-concatenation-2">concatenation</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-concatenation-3">concatenation</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-conditional-Operator">conditional Operator</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-config_002eguess"><samp>config.guess</samp></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-configure_002eeg"><samp>configure.eg</samp></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-constraint-expressions">constraint expressions</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-contents">contents</a>:</td><td> </td><td valign="top"><a href="#How-to-Use-This-guide">How to Use This guide</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-contributing">contributing</a>:</td><td> </td><td valign="top"><a href="#Contributing">Contributing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-contributors">contributors</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-limits">coordinate limits</a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variable">coordinate variable</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variable-1">coordinate variable</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variable-2">coordinate variable</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variable-3">coordinate variable</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variable-4">coordinate variable</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinate-variables">coordinate variables</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates"><code>coordinates</code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates-1"><code>coordinates</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates-2">coordinates</a>:</td><td> </td><td valign="top"><a href="#Add-Coordinates-to-MODIS-Data">Add Coordinates to MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates-attribute"><code>coordinates</code> attribute</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates-attribute-1"><code>coordinates</code> attribute</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates-convention">coordinates convention</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-coordinates_002c-modifying">coordinates, modifying</a>:</td><td> </td><td valign="top"><a href="#Permute-MODIS-Coordinates">Permute MODIS Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-core-dump">core dump</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-core-dump-1"><code>core dump</code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-core-dump-2"><code>core dump</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cos"><var>cos</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cosh"><var>cosh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cosine-function">cosine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-covariance">covariance</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cp"><code>cp</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Cray">Cray</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Cray-1">Cray</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-csh"><code>csh</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Csh-shell">Csh shell</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-cxx"><code>cxx</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Cygwin">Cygwin</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Cygwin-1">Cygwin</a>:</td><td> </td><td valign="top"><a href="#Symbolic-Links">Symbolic Links</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-C_005fformat"><var>C_format</var></a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-D">D</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-daily-data">daily data</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-daily-data-1">daily data</a>:</td><td> </td><td valign="top"><a href="#One-time-point-one-file">One time point one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-daily-data-2">daily data</a>:</td><td> </td><td valign="top"><a href="#Multiple-files-with-multiple-time-points">Multiple files with multiple time points</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Daniel-Baumann">Daniel Baumann</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Daniel-Wang">Daniel Wang</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DAP"><acronym>DAP</acronym></a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-data-access-protocol">data access protocol</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-data-safety">data safety</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-data-safety-1">data safety</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-data_002c-missing">data, missing</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-data_002c-missing-1">data, missing</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-date"><code>date</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-datesec"><code>datesec</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dbg_005flvl"><var>dbg_lvl</var></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dbg_005flvl-1"><var>dbg_lvl</var></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dbg_005flvl-2"><var>dbg_lvl</var></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DDRA"><acronym>DDRA</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Debian">Debian</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-debug_002dlevel"><var>debug-level</var></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-debug_002dlevel-1"><var>debug-level</var></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-debugging">debugging</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-debugging-1">debugging</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-debugging-2">debugging</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DEC"><acronym>DEC</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Decimal-Significant-Digits">Decimal Significant Digits</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-defdim_0028_0029"><code>defdim()</code></a>:</td><td> </td><td valign="top"><a href="#Dimensions">Dimensions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-defining-dimensions-in-ncap2">defining dimensions in <code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Dimensions">Dimensions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DEFLATE"><acronym>DEFLATE</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-deflation">deflation</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-deflation-1">deflation</a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-deflation-2">deflation</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-1">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-2">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-3">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-4">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-5">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-6">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-7">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-8">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-degenerate-dimension-9">degenerate dimension</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-delete-_0028groups_0029">delete (groups)</a>:</td><td> </td><td valign="top"><a href="#Flattening-Groups">Flattening Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-delete_005fmiss_0028_0029"><code>delete_miss()</code></a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-demotion">demotion</a>:</td><td> </td><td valign="top"><a href="#Type-Conversion">Type Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Dennis-Heimbigner">Dennis Heimbigner</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-derived-fields">derived fields</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-derived-fields-1">derived fields</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-digest">digest</a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Digital">Digital</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dimension-limits">dimension limits</a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dimension-names">dimension names</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dimension-order">dimension order</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dimensions_002c-growing">dimensions, growing</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-disaggregate">disaggregate</a>:</td><td> </td><td valign="top"><a href="#Dismembering-Files">Dismembering Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-disjoint-files">disjoint files</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-diskless-files">diskless files</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dismember">dismember</a>:</td><td> </td><td valign="top"><a href="#Dismembering-Files">Dismembering Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Distributed-Data-Reduction-_0026-Analysis">Distributed Data Reduction & Analysis</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Distributed-Oceanographic-Data-System">Distributed Oceanographic Data System</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-divide"><code>divide</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dividing-data">dividing data</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-division">division</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dmn">‘<samp>dmn</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-documentation">documentation</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DODS"><acronym>DODS</acronym></a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DODS-1"><acronym>DODS</acronym></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DODS_005fROOT"><code>DODS_ROOT</code></a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dot-product">dot product</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dot-product-1">dot product</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-double_0028_0029">double()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-double_002dprecision">double-precision</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-DSD"><acronym>DSD</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dsort"><code>dsort</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-duration">duration</a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-dynamic-linking">dynamic linking</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-E">E</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Ed-Hartnett">Ed Hartnett</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Ed-Hill">Ed Hill</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-eddy-covariance">eddy covariance</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-editing-attributes">editing attributes</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-egrep"><code>egrep</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Elliptic-integrals">Elliptic integrals</a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ensemble">ensemble</a>:</td><td> </td><td valign="top"><a href="#Concatenation">Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ensemble-1">ensemble</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ensemble-average">ensemble average</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ensemble-concatenation">ensemble concatenation</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-erf"><var>erf</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-erfc"><var>erfc</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Eric-Blake">Eric Blake</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-error-function">error function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-error-tolerance">error tolerance</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Etienne-Tourigny">Etienne Tourigny</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exclusion">exclusion</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exclusion-1">exclusion</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exclusion-2">exclusion</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time">execution time</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-1">execution time</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-2">execution time</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-3">execution time</a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-4">execution time</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-5">execution time</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-execution-time-6">execution time</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exp"><var>exp</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exponent">exponent</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exponentiation">exponentiation</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-exponentiation-function">exponentiation function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-expressions">expressions</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-file-format">extended file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-regular-expressions">extended regular expressions</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-regular-expressions-1">extended regular expressions</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-regular-expressions-2">extended regular expressions</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-regular-expressions-3">extended regular expressions</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extended-regular-expressions-4">extended regular expressions</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extraction">extraction</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extraction-1">extraction</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-extraction-2">extraction</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-F">F</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-f90"><code>f90</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-features_002c-requesting">features, requesting</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-File-buffers">File buffers</a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-file-combination">file combination</a>:</td><td> </td><td valign="top"><a href="#Combine-Files">Combine Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-file-deletion">file deletion</a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-file-multiplication">file multiplication</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-file-removal">file removal</a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-file-retention">file retention</a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-files_002c-multiple">files, multiple</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-files_002c-numerous-input">files, numerous input</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Filipe-Fernandes">Filipe Fernandes</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-filters">filters</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-findgen_002dequivalent">findgen-equivalent</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fix-record-dimension">fix record dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fix-record-dimension-1">fix record dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fix-record-dimension-2">fix record dimension</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fixed-dimension">fixed dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fixed-dimension-1">fixed dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fixed-dimension-2">fixed dimension</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-fixed-dimension-3">fixed dimension</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-flags">flags</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-flatten-_0028groups_0029">flatten (groups)</a>:</td><td> </td><td valign="top"><a href="#Flattening-Groups">Flattening Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-flattening">flattening</a>:</td><td> </td><td valign="top"><a href="#Autoconversion">Autoconversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-float"><code>float</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-float_0028_0029">float()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-floor"><var>floor</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-floor-function">floor function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-flt_005fbyt">‘<samp>flt_byt</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-flt_005fsht">‘<samp>flt_sht</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-for_0028_0029">for()</a>:</td><td> </td><td valign="top"><a href="#Loops">Loops</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-force-append">force append</a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-force-overwrite">force overwrite</a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-foreword">foreword</a>:</td><td> </td><td valign="top"><a href="#Foreword">Foreword</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Fortran">Fortran</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Fortran-1">Fortran</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Fortran-2">Fortran</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Fortran-index-convention">Fortran index convention</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-FORTRAN_005fformat"><var>FORTRAN_format</var></a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Francesco-Lovergine">Francesco Lovergine</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ftp"><code>ftp</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ftp-1"><code>ftp</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-FTP"><acronym>FTP</acronym></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-funding">funding</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-G">G</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-g_002b_002b"><code>g++</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-g_002b_002b-1"><code>g++</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-g2d">‘<samp>g2d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-g3d">‘<samp>g3d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GAG"><acronym>GAG</acronym></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gamma"><var>gamma</var></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gamma-1"><var>gamma</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gamma-function">gamma function</a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gamma-function-1">gamma function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Gary-Strand">Gary Strand</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Gaussian-weights">Gaussian weights</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Gavin-Burris">Gavin Burris</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Gayathri-Venkitachalam">Gayathri Venkitachalam</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gcc"><code>gcc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gcc-1"><code>gcc</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GCM"><acronym>GCM</acronym></a>:</td><td> </td><td valign="top"><a href="#Climate-Model-Paradigm">Climate Model Paradigm</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GCM-1"><acronym>GCM</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GCM-2"><acronym>GCM</acronym></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-geographical-weight">geographical weight</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-George-Shapavalov">George Shapavalov</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-George-Shapovalov">George Shapovalov</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-George-White">George White</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gethostname"><code>gethostname</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-getopt"><code>getopt</code></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-getopt_002eh"><samp>getopt.h</samp></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-getopt_005flong"><code>getopt_long</code></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-getuid"><code>getuid</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-get_005fmiss_0028_0029"><code>get_miss()</code></a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Glenn-Davis">Glenn Davis</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attribute"><code>global</code> attribute</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attribute-1"><code>global</code> attribute</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes">global attributes</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-1">global attributes</a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-2">global attributes</a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-3">global attributes</a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-4">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-5">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-6">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-7">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-8">global attributes</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-9">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-global-attributes-10">global attributes</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing">globbing</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-1">globbing</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-2">globbing</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-3">globbing</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-4">globbing</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-5">globbing</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-globbing-6">globbing</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GNU"><acronym>GNU</acronym></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GNU-1"><acronym>GNU</acronym></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gnu_002dwin32"><code>gnu-win32</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GNU_002fLinux"><acronym>GNU</acronym>/Linux</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GNUmakefile"><samp>GNUmakefile</samp></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-God">God</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GODAD"><acronym>GODAD</acronym></a>:</td><td> </td><td valign="top"><a href="#CMIP5-Example">CMIP5 Example</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-grep-_002dE"><code>grep -E</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group-aggregation">group aggregation</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group-aggregation-1">group aggregation</a>:</td><td> </td><td valign="top"><a href="#Combine-Files">Combine Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group-attributes">group attributes</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group-names">group names</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group-path">group path</a>:</td><td> </td><td valign="top"><a href="#Group-Path-Editing">Group Path Editing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-aggregation">group, aggregation</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-anomaly">group, anomaly</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-dimension-permutation">group, dimension permutation</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-spatial-averaging">group, spatial averaging</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-standard-deviation">group, standard deviation</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-group_002c-temporal-averaging">group, temporal averaging</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups">groups</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups-1">groups</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups_002c-averaging">groups, averaging</a>:</td><td> </td><td valign="top"><a href="#Global-Distribution-of-Long_002dterm-Average">Global Distribution of Long-term Average</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups_002c-creating">groups, creating</a>:</td><td> </td><td valign="top"><a href="#Combine-Files">Combine Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups_002c-moving">groups, moving</a>:</td><td> </td><td valign="top"><a href="#Moving-Groups">Moving Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-groups_002c-renaming">groups, renaming</a>:</td><td> </td><td valign="top"><a href="#Moving-Groups">Moving Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-growing-dimensions">growing dimensions</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GSL"><acronym>GSL</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GSL-1"><acronym>GSL</acronym></a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-GSL-2"><acronym>GSL</acronym></a>:</td><td> </td><td valign="top"><a href="#GSL-interpolation">GSL interpolation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gsl_005fsf_005fbessel_005fJn"><var>gsl_sf_bessel_Jn</var></a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gsl_005fsf_005fgamma"><var>gsl_sf_gamma</var></a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gsl_005fsf_005flegendre_005fPl"><code>gsl_sf_legendre_Pl</code></a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gunzip"><code>gunzip</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gw"><code>gw</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gw-1"><code>gw</code></a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gzip"><code>gzip</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-gzip-1"><code>gzip</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-H">H</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-H4CF"><acronym>H4CF</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-h4tonccf"><code>h4tonccf</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Harry-Mangalam">Harry Mangalam</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hash">hash</a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF"><acronym>HDF</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF-1"><acronym>HDF</acronym></a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF-2"><acronym>HDF</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF-3"><acronym>HDF</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF-unpacking"><acronym>HDF</acronym> unpacking</a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF4"><acronym>HDF4</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF4-1"><acronym>HDF4</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF4_005fUNKNOWN"><code>HDF4_UNKNOWN</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF5"><acronym>HDF5</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF5-1"><acronym>HDF5</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HDF5-2"><acronym>HDF5</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hdf_005fname"><code>hdf_name</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hdp"><code>hdp</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-help">help</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Henry-Butowsky">Henry Butowsky</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hgh_005fbyt">‘<samp>hgh_byt</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hgh_005fsht">‘<samp>hgh_sht</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hidden-attributes">hidden attributes</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hidden-features">hidden features</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Hierarchical-Data-Format">Hierarchical Data Format</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history-1"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history-2"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history-3"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history-4"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-history-5"><code>history</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hncgen"><code>hncgen</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HP"><acronym>HP</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HPSS"><acronym>HPSS</acronym></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hsi"><code>hsi</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HTML"><acronym>HTML</acronym></a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-HTTP-protocol"><acronym>HTTP</acronym> protocol</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Huffman-coding">Huffman coding</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyai"><code>hyai</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyam"><code>hyam</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hybi"><code>hybi</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hybm"><code>hybm</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hybrid-coordinate-system">hybrid coordinate system</a>:</td><td> </td><td valign="top"><a href="#Left-hand-casting">Left hand casting</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-arccosine-function">hyperbolic arccosine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-arcsine-function">hyperbolic arcsine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-arctangent-function">hyperbolic arctangent function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-cosine-function">hyperbolic cosine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-sine-function">hyperbolic sine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperbolic-tangent">hyperbolic tangent</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab">hyperslab</a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-1">hyperslab</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-2">hyperslab</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-3">hyperslab</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-4">hyperslab</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-5">hyperslab</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslab-6">hyperslab</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-hyperslabs">hyperslabs</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-I">I</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-I_002fO">I/O</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-I_002fO-1">I/O</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-I_002fO-2">I/O</a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-I_002fO-block-size">I/O block size</a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-I18N">I18N</a>:</td><td> </td><td valign="top"><a href="#Internationalization">Internationalization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IBM"><acronym>IBM</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-icc"><code>icc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ID-Quoting">ID Quoting</a>:</td><td> </td><td valign="top"><a href="#ID-Quoting">ID Quoting</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IDL"><acronym>IDL</acronym></a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IEEE"><acronym>IEEE</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IEEE-1"><acronym>IEEE</acronym></a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IEEE-754"><acronym>IEEE</acronym> 754<!-- /@w --></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IEEE-NaN"><acronym>IEEE</acronym> NaN</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-if_0028_0029">if()</a>:</td><td> </td><td valign="top"><a href="#if-statement">if statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ilimit"><code>ilimit</code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-illegal-names">illegal names</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-implicit-conversion">implicit conversion</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-include"><code>include</code></a>:</td><td> </td><td valign="top"><a href="#Include-files">Include files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-including-files">including files</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-index-convention">index convention</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-indgen_002dequivalent">indgen-equivalent</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-inexact-conversion">inexact conversion</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Info">Info</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input-files">input files</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input-files-1">input files</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input-files-2">input files</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input-files-3">input files</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input_002dpath"><var>input-path</var></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-input_002dpath-1"><var>input-path</var></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-installation">installation</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-installation-1">installation</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-int_0028_0029">int()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-int64_0028_0029">int64()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-integration">integration</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-integrity">integrity</a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Intel">Intel</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Internationalization">Internationalization</a>:</td><td> </td><td valign="top"><a href="#Internationalization">Internationalization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-interoperability">interoperability</a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-interpolation">interpolation</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-interpolation-1">interpolation</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-intersection">intersection</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-intersection-1">intersection</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-introduction">introduction</a>:</td><td> </td><td valign="top"><a href="#Introduction">Introduction</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-introduction-1">introduction</a>:</td><td> </td><td valign="top"><a href="#How-to-Use-This-guide">How to Use This guide</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-invert_005fmap"><code>invert_map</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IPCC"><acronym>IPCC</acronym></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-IPCC-1"><acronym>IPCC</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-irregular-grids">irregular grids</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ISO"><acronym>ISO</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-J">J</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-James-Gallagher">James Gallagher</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Jim-Edwards">Jim Edwards</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Joe-Hamman">Joe Hamman</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-John-Caron">John Caron</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Juliana-Rew">Juliana Rew</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-K">K</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Karen-Schuchardt">Karen Schuchardt</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Keith-Lindsay">Keith Lindsay</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-kitchen-sink">kitchen sink</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Kyle-Wilcox">Kyle Wilcox</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-L">L</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-L10N">L10N</a>:</td><td> </td><td valign="top"><a href="#Internationalization">Internationalization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-large-datasets">large datasets</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-large-datasets-1">large datasets</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Large-File-Support">Large File Support</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Large-File-Support-1">Large File Support</a>:</td><td> </td><td valign="top"><a href="#Large-File-Support">Large File Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lat_005fbnds"><code>lat_bnds</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LD_005fLIBRARY_005fPATH"><code>LD_LIBRARY_PATH</code></a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Least-Significant-Digit">Least Significant Digit</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-least_005fsignificant_005fdigit"><code>least_significant_digit</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-left-hand-casting">left hand casting</a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-left-hand-casting-1">left hand casting</a>:</td><td> </td><td valign="top"><a href="#Left-hand-casting">Left hand casting</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Legendre-polynomial">Legendre polynomial</a>:</td><td> </td><td valign="top"><a href="#GSL-special-functions">GSL special functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Lempel_002dZiv-deflation">Lempel-Ziv deflation</a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Len-Makin">Len Makin</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lexer">lexer</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lfp">‘<samp>lfp</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LFS"><acronym>LFS</acronym></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LFS-1"><acronym>LFS</acronym></a>:</td><td> </td><td valign="top"><a href="#Large-File-Support">Large File Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LHS"><acronym>LHS</acronym></a>:</td><td> </td><td valign="top"><a href="#Left-hand-casting">Left hand casting</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-libnco"><code>libnco</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-libraries">libraries</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-linkers">linkers</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Linux">Linux</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LLVM"><acronym>LLVM</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ln"><var>ln</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ln-_002ds"><code>ln -s</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ln-_002ds-1"><code>ln -s</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-log"><var>log</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-log10"><var>log10</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-logarithm_002c-base-10">logarithm, base 10</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-logarithm_002c-natural">logarithm, natural</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-long-double"><code>long double</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-long-options">long options</a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-long-options-1">long options</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-long_002dterm-average">long-term average</a>:</td><td> </td><td valign="top"><a href="#Global-Distribution-of-Long_002dterm-Average">Global Distribution of Long-term Average</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-longitude">longitude</a>:</td><td> </td><td valign="top"><a href="#Wrapped-Coordinates">Wrapped Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lon_005fbnds"><code>lon_bnds</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Lori-Sentman">Lori Sentman</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lossy-compression">lossy compression</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lrint_0028_0029_002e"><code><code>lrint()</code>.</code></a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-lround_0028_0029_002e"><code><code>lround()</code>.</code></a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-LSD"><acronym>LSD</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Luk-Claes">Luk Claes</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-M">M</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mabs"><code>mabs</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mabs_0028_0029">mabs()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Macintosh">Macintosh</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Makefile"><samp>Makefile</samp></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Makefile-1"><samp>Makefile</samp></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Makefile-2"><samp>Makefile</samp></a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-malloc_0028_0029"><code>malloc()</code></a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mantissa">mantissa</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-manual-type-conversion">manual type conversion</a>:</td><td> </td><td valign="top"><a href="#Type-Conversion">Type Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005fdmn">‘<samp>map_dmn</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005flfp">‘<samp>map_lfp</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005fnc4">‘<samp>map_nc4</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005fprd">‘<samp>map_prd</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005frd1">‘<samp>map_rd1</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005frew">‘<samp>map_rew</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005fscl">‘<samp>map_scl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-map_005fxst">‘<samp>map_xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Mark-Flanner">Mark Flanner</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Markus-Liebig">Markus Liebig</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Martin-Dix">Martin Dix</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Martin-Otte">Martin Otte</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Martin-Schmidt">Martin Schmidt</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Martin-Schultz">Martin Schultz</a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mask">mask</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mask-1">mask</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mask-condition">mask condition</a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mask-condition-1">mask condition</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-masked-average">masked average</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Mass-Store-System">Mass Store System</a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Matej-Vela">Matej Vela</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mathematical-functions">mathematical functions</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Matlab">Matlab</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-max"><code>max</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-max_0028_0029">max()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-maximum">maximum</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MD5-digest">MD5 digest</a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mean">mean</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mebs"><code>mebs</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mebs_0028_0029">mebs()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-available">memory available</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-available-1">memory available</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-leaks">memory leaks</a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-requirements">memory requirements</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-requirements-1">memory requirements</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-memory-requirements-2">memory requirements</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-merging-files">merging files</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-merging-files-1">merging files</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-metadata">metadata</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-metadata-optimization">metadata optimization</a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-metadata_002c-global">metadata, global</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-metadata_002c-global-1">metadata, global</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mibs"><code>mibs</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mibs_0028_0029">mibs()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Michael-Decker">Michael Decker</a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Michael-Prather">Michael Prather</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Michael-Schulz">Michael Schulz</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Microsoft">Microsoft</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Microsoft-1">Microsoft</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Microsoft-Visual-Studio">Microsoft Visual Studio</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Mike-Folk">Mike Folk</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Mike-Page">Mike Page</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-min"><code>min</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-min_0028_0029">min()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-minimum">minimum</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing-values">missing values</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing-values-1">missing values</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing-values-2">missing values</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing-values-3">missing values</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing-values-ncap2">missing values ncap2</a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing_005fvalue"><code>missing_value</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing_005fvalue-1"><code>missing_value</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-missing_005fvalue-2"><code>missing_value</code></a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MKS-units">MKS units</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MKS-units-1">MKS units</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MODIS">MODIS</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MODIS-1">MODIS</a>:</td><td> </td><td valign="top"><a href="#Add-Coordinates-to-MODIS-Data">Add Coordinates to MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-modulus">modulus</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monotonic-coordinates">monotonic coordinates</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monthly-average">monthly average</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monthly-average-1">monthly average</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monthly-data">monthly data</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monthly-data-1">monthly data</a>:</td><td> </td><td valign="top"><a href="#One-time-point-one-file">One time point one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-monthly-data-2">monthly data</a>:</td><td> </td><td valign="top"><a href="#Multiple-files-with-multiple-time-points">Multiple files with multiple time points</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-move-groups">move groups</a>:</td><td> </td><td valign="top"><a href="#Moving-Groups">Moving Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MRO">MRO</a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MSA"><acronym>MSA</acronym></a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-msk_005f_002a"><code>msk_*</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-msrcp"><code>msrcp</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-msrcp-1"><acronym>msrcp</acronym></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-msread"><code>msread</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MSS"><acronym>MSS</acronym></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#Single-and-Multi_002dfile-Operators">Single and Multi-file Operators</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-1">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-2">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-3">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-4">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-5">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dfile-operators-6">multi-file operators</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multi_002dhyperslab">multi-hyperslab</a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Multi_002dRecord-Operator">Multi-Record Operator</a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiplication">multiplication</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiplication-1">multiplication</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiplication-2">multiplication</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiply"><code>multiply</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiplying-data">multiplying data</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multiplying-data-1">multiplying data</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-multislab">multislab</a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-mv"><code>mv</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MVS"><code>MVS</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-MVS-1"><acronym>MVS</acronym></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-N">N</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-naked-characters">naked characters</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NaN">NaN</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NARR-_0028North-American-Regional-Reanalysis_0029a"><acronym>NARR</acronym> (North American Regional Reanalysis)a</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NASA"><acronym>NASA</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NASA-EOSDIS"><acronym>NASA EOSDIS</acronym></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-National-Virtual-Ocean-Data-System">National Virtual Ocean Data System</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nc3tonc4"><code>nc3tonc4</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nc4">‘<samp>nc4</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncadd"><code>ncadd</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap"><code>ncap</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2-4"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2-5"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2-1"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2-2"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Manual-type-conversion">Manual type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncap2-3"><code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCAR"><acronym>NCAR</acronym></a>:</td><td> </td><td valign="top"><a href="#Climate-Model-Paradigm">Climate Model Paradigm</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCAR-1"><acronym>NCAR</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCAR-MSS"><acronym>NCAR MSS</acronym></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncatted-3"><code>ncatted</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncatted-4"><code>ncatted</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncatted"><code>ncatted</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncatted-1"><code>ncatted</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncatted-2"><code>ncatted</code></a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncattget"><code>ncattget</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncattget-1"><code>ncattget</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncavg"><code>ncavg</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncbo-1"><code>ncbo</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncbo"><code>ncbo</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdiff"><code>ncdiff</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdismember"><code>ncdismember</code></a>:</td><td> </td><td valign="top"><a href="#Dismembering-Files">Dismembering Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdismember-1"><code>ncdismember</code></a>:</td><td> </td><td valign="top"><a href="#Checking-CF_002dcompliance">Checking CF-compliance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdivide"><code>ncdivide</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdmnsz"><code>ncdmnsz</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdump"><code>ncdump</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdump-1"><code>ncdump</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdump-2"><code>ncdump</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncdump-3"><code>ncdump</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncecat-1"><code>ncecat</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncecat"><code>ncecat</code></a>:</td><td> </td><td valign="top"><a href="#Concatenation">Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nces-2"><code>nces</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nces"><code>nces</code></a>:</td><td> </td><td valign="top"><a href="#Averaging">Averaging</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nces-1"><code>nces</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncextr"><code>ncextr</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncflint-2"><code>ncflint</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncflint"><code>ncflint</code></a>:</td><td> </td><td valign="top"><a href="#Interpolating">Interpolating</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncflint-1"><code>ncflint</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncgen"><code>ncgen</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncgen_002dhdf"><code>ncgen-hdf</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncks-1"><code>ncks</code></a>:</td><td> </td><td valign="top"><a href="#Deflation">Deflation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncks-2"><code>ncks</code></a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncks-3"><code>ncks</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncks"><code>ncks</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCL"><acronym>NCL</acronym></a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCL-1"><acronym>NCL</acronym></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nclist"><code>nclist</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncl_005fconvert2nc"><code>ncl_convert2nc</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncl_005fconvert2nc-1"><code>ncl_convert2nc</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncmax"><code>ncmax</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncmdn"><code>ncmdn</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncmin"><code>ncmin</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NcML"><acronym>NcML</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncmult"><code>ncmult</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncmultiply"><code>ncmultiply</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCO-availability"><acronym>NCO</acronym> availability</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCO-homepage"><acronym>NCO</acronym> homepage</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco-script-file">nco script file</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCO-User-Guide"><cite>NCO User Guide</cite></a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_002econfig_002elog_002e_0024_007bGNU_005fTRP_007d_002efoo"><samp>nco.config.log.${GNU_TRP}.foo</samp></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_002econfigure_002e_0024_007bGNU_005fTRP_007d_002efoo"><samp>nco.configure.${GNU_TRP}.foo</samp></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_002emake_002e_0024_007bGNU_005fTRP_007d_002efoo"><samp>nco.make.${GNU_TRP}.foo</samp></a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_005finput_005ffile_005flist"><code>nco_input_file_list</code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_005finput_005ffile_005flist-1"><code>nco_input_file_list</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_005finput_005ffile_005fnumber"><code>nco_input_file_number</code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_005finput_005ffile_005fnumber-1"><code>nco_input_file_number</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nco_005fopenmp_005fthread_005fnumber"><code>nco_openmp_thread_number</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpack"><code>ncpack</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq-2"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq-3"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq-4"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq-5"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#Concatenation">Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncpdq-1"><code>ncpdq</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncra-2"><code>ncra</code></a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncra-3"><code>ncra</code></a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncra"><code>ncra</code></a>:</td><td> </td><td valign="top"><a href="#Averaging">Averaging</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncra-1"><code>ncra</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrcat-2"><code>ncrcat</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrcat"><code>ncrcat</code></a>:</td><td> </td><td valign="top"><a href="#Concatenation">Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrcat-1"><code>ncrcat</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrecsz"><code>ncrecsz</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrename"><code>ncrename</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrename-1"><code>ncrename</code></a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncrng"><code>ncrng</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NCSA"><acronym>NCSA</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncsub"><code>ncsub</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncsubtract"><code>ncsubtract</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncunits"><code>ncunits</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncunpack"><code>ncunpack</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncwa-3"><code>ncwa</code></a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncwa-4"><code>ncwa</code></a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncwa"><code>ncwa</code></a>:</td><td> </td><td valign="top"><a href="#Averaging">Averaging</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncwa-1"><code>ncwa</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ncwa-2"><code>ncwa</code></a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fBYTE"><code>NC_BYTE</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fCHAR"><code>NC_CHAR</code></a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fCHAR-1"><code>NC_CHAR</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fCHAR-2"><code>NC_CHAR</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fDISKLESS"><code>NC_DISKLESS</code></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fDOUBLE"><code>NC_DOUBLE</code></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fDOUBLE-1"><code>NC_DOUBLE</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFLOAT"><code>NC_FLOAT</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fDAP2"><code>NC_FORMAT_DAP2</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fDAP4"><code>NC_FORMAT_DAP4</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fNC3"><code>NC_FORMAT_NC3</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fNC_005fHDF4"><code>NC_FORMAT_NC_HDF4</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fNC_005fHDF5"><code>NC_FORMAT_NC_HDF5</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fFORMAT_005fPNETCDF"><code>NC_FORMAT_PNETCDF</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fINT"><code>NC_INT</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fINT64"><code>NC_INT64</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fINT64-1"><code>NC_INT64</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fSHORT"><code>NC_SHORT</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUBYTE"><code>NC_UBYTE</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUBYTE-1"><code>NC_UBYTE</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUINT"><code>NC_UINT</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUINT-1"><code>NC_UINT</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUINT64"><code>NC_UINT64</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUINT64-1"><code>NC_UINT64</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUSHORT"><code>NC_USHORT</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NC_005fUSHORT-1"><code>NC_USHORT</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nc_005f_005fenddef_0028_0029"><code>nc__enddef()</code></a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ndims_0028_0029">ndims()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nearbyint"><var>nearbyint</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nearest-integer-function-_0028exact_0029">nearest integer function (exact)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nearest-integer-function-_0028inexact_0029">nearest integer function (inexact)</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NEC"><acronym>NEC</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Neil-Davis">Neil Davis</a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nesting">nesting</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF">netCDF</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF2">netCDF2</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF2-1">netCDF2</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NETCDF2_005fONLY"><code>NETCDF2_ONLY</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF3">netCDF3</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF3-1">netCDF3</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF3-classic-file-format">netCDF3 classic file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF4">netCDF4</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF4-1">netCDF4</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF4-2">netCDF4</a>:</td><td> </td><td valign="top"><a href="#Multiple-Record-Dimensions">Multiple Record Dimensions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF4-classic-file-format">netCDF4 classic file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-netCDF4-file-format">netCDF4 file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NETCDF4-files"><code>NETCDF4</code> files</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NETCDF4_005fCLASSIC-files"><code>NETCDF4_CLASSIC</code> files</a>:</td><td> </td><td valign="top"><a href="#File-Formats-and-Conversion">File Formats and Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NETCDF4_005fROOT"><code>NETCDF4_ROOT</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Nick-Bower">Nick Bower</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NINTAP"><code>NINTAP</code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NINTAP-1"><code>NINTAP</code></a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NINTAP-2"><code>NINTAP</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-non_002dcoordinate-grid-properties">non-coordinate grid properties</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-non_002drectangular-grids">non-rectangular grids</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-non_002dstandard-grids">non-standard grids</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-normalization">normalization</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-North-American-Regional-Reanalysis-_0028NARR_0029">North American Regional Reanalysis (<acronym>NARR</acronym>)</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Not_002da_002dNumber">Not-a-Number</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NO_005fNETCDF_005f2"><code>NO_NETCDF_2</code></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NRA"><acronym>NRA</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nrnet"><code>nrnet</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NSD"><acronym>NSD</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NSF"><acronym>NSF</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NSF-1"><acronym>NSF</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NT-_0028Microsoft-operating-system_0029"><acronym>NT</acronym> (Microsoft operating system)</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NUL">NUL</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NUL-1"><code>NUL</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NUL_002dtermination">NUL-termination</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-null-operation">null operation</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-number-literals-ncap2">number literals <code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#Number-literals">Number literals</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Number-of-Significant-Digits">Number of Significant Digits</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-number_005fmiss_0028_0029"><code>number_miss()</code></a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-number_005fof_005fsignificant_005fdigits"><code>number_of_significant_digits</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-numerator"><code>numerator</code></a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-NVODS"><acronym>NVODS</acronym></a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-nxt_005flsr">‘<samp>nxt_lsr</samp>’</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-O">O</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-oceanography">oceanography</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-octal-dump">octal dump</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-od"><code>od</code></a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OMP_005fNUM_005fTHREADS"><code>OMP_NUM_THREADS</code></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-on_002dline-documentation">on-line documentation</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-open-source">open source</a>:</td><td> </td><td valign="top"><a href="#Foreword">Foreword</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-open-source-1">open source</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Open_002dsource-Project-for-a-Network-Data-Access-Protocol">Open-source Project for a Network Data Access Protocol</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OPeNDAP_002e"><acronym>OPeNDAP</acronym>.</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OpenMP">OpenMP</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OpenMP-1">OpenMP</a>:</td><td> </td><td valign="top"><a href="#Single-and-Multi_002dfile-Operators">Single and Multi-file Operators</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OpenMP-2">OpenMP</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operation-types">operation types</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operation-types-1">operation types</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operation-types-2">operation types</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed">operator speed</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-1">operator speed</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-2">operator speed</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-3">operator speed</a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-4">operator speed</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-5">operator speed</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operator-speed-6">operator speed</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-operators">operators</a>:</td><td> </td><td valign="top"><a href="#Summary">Summary</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OptIPuter">OptIPuter</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Orion-Powlawski">Orion Powlawski</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ORO"><code>ORO</code></a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ORO-1"><code>ORO</code></a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-orphan-dimensions">orphan dimensions</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-OS"><acronym>OS</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-output-file">output file</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-output-file-1">output file</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-output_002dpath"><var>output-path</var></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-overview">overview</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-overwriting-files">overwriting files</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-overwriting-files-1">overwriting files</a>:</td><td> </td><td valign="top"><a href="#Batch-Mode">Batch Mode</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-P">P</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pack_0028_0029">pack()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pack_0028x_0029"><code>pack(x)</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing">packing</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-1">packing</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-2">packing</a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-3">packing</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-4">packing</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-5">packing</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-map">packing map</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-packing-policy">packing policy</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pack_005fbyte_0028_0029">pack_byte()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pack_005fint_0028_0029">pack_int()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pack_005fshort_0028_0029">pack_short()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-papers">papers</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-parallel"><code>parallel</code></a>:</td><td> </td><td valign="top"><a href="#Parallel">Parallel</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-parallelism">parallelism</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-parallelism-1">parallelism</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-parser">parser</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pasting-variables">pasting variables</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pathcc"><code>pathcc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pathCC"><code>pathCC</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-PathScale">PathScale</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Patrice-Dumas">Patrice Dumas</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Patrick-Kursawe">Patrick Kursawe</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pattern-matching">pattern matching</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pattern-matching-1">pattern matching</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pattern-matching-2">pattern matching</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pattern-matching-3">pattern matching</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-PayPal">PayPal</a>:</td><td> </td><td valign="top"><a href="#Contributing">Contributing</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pck_005fmap"><var>pck_map</var></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pck_005fplc"><var>pck_plc</var></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-peak-memory-usage">peak memory usage</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-peak-memory-usage-1">peak memory usage</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Pedro-Vicente">Pedro Vicente</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance">performance</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-1">performance</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-2">performance</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-3">performance</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-4">performance</a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-5">performance</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-6">performance</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-performance-7">performance</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Perl">Perl</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Perl-1">Perl</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Perl-2">Perl</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-permute-dimensions">permute dimensions</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-permute_0028_0029">permute()</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Peter-Campbell">Peter Campbell</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pgcc"><code>pgcc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pgCC"><code>pgCC</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-PGI"><acronym>PGI</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-philosophy">philosophy</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pipes">pipes</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fall">‘<samp>plc_all</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fg2d">‘<samp>plc_g2d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fg3d">‘<samp>plc_g3d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fr1d">‘<samp>plc_r1d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fxpl">‘<samp>plc_xpl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-plc_005fxst">‘<samp>plc_xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-portability">portability</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-positional-arguments">positional arguments</a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-POSIX"><acronym>POSIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-POSIX-1"><acronym>POSIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pow"><var>pow</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-power">power</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-power-function">power function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-PPC"><acronym>PPC</acronym></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-prd">‘<samp>prd</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-precision">precision</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-preprocessor-tokens">preprocessor tokens</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-presentations">presentations</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-print_0028_0029-ncap2">print() <code>ncap2</code></a>:</td><td> </td><td valign="top"><a href="#print-statement">print statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printf"><code>printf</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printf_0028_0029"><code>printf()</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printf_0028_0029-1"><code>printf()</code></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printf_0028_0029-2"><code>printf()</code></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printing-files-contents">printing files contents</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-printing-variables">printing variables</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Processor">Processor</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Processor-1">Processor</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Processor_002c-CCM">Processor, <acronym>CCM</acronym></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-promotion">promotion</a>:</td><td> </td><td valign="top"><a href="#Type-Conversion">Type Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-promotion-1">promotion</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-promotion-2">promotion</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-proposals">proposals</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-pseudonym">pseudonym</a>:</td><td> </td><td valign="top"><a href="#Symbolic-Links">Symbolic Links</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-publications">publications</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-Q">Q</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-QLogic">QLogic</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Qt">Qt</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quadruple_002dprecision">quadruple-precision</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quantization">quantization</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quantization-1">quantization</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quench">quench</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Quick-Start">Quick Start</a>:</td><td> </td><td valign="top"><a href="#Quick-Start">Quick Start</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quotes">quotes</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quotes-1">quotes</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quotes-2">quotes</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-quotes-3">quotes</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-R">R</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-r1d">‘<samp>r1d</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAG"><acronym>RAG</acronym></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM"><acronym>RAM</acronym></a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-1"><acronym>RAM</acronym></a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-disks"><acronym>RAM</acronym> disks</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-disks-1"><acronym>RAM</acronym> disks</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-files"><acronym>RAM</acronym> files</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-files-1"><acronym>RAM</acronym> files</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-variables"><acronym>RAM</acronym> variables</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RAM-variables-1"><acronym>RAM</acronym> variables</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ram_005fdelete_0028_0029">ram_delete()</a>:</td><td> </td><td valign="top"><a href="#RAM-variables">RAM variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ram_005fwrite_0028_0029">ram_write()</a>:</td><td> </td><td valign="top"><a href="#RAM-variables">RAM variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-random-walk">random walk</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rank">rank</a>:</td><td> </td><td valign="top"><a href="#Expressions">Expressions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rank-1">rank</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rank-2">rank</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rank-3">rank</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rank-4">rank</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rcp"><code>rcp</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rcp-1"><code>rcp</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RCS"><acronym>RCS</acronym></a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rd1">‘<samp>rd1</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-re_002ddimension">re-dimension</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-re_002dorder-dimensions">re-order dimensions</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-aggregation">record aggregation</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-append">record append</a>:</td><td> </td><td valign="top"><a href="#Record-Appending">Record Appending</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-average">record average</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-concatenation">record concatenation</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension">record dimension</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-1">record dimension</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-2">record dimension</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-3">record dimension</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-4">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-5">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-6">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-7">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-8">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-9">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-10">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-11">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-12">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-13">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-dimension-14">record dimension</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-variable">record variable</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-record-variable-1">record variable</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rectangular-grids">rectangular grids</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-recursion">recursion</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-recursive">recursive</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regex"><code>regex</code></a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regression">regression</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regressions-archive">regressions archive</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regrid">regrid</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions">regular expressions</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions-1">regular expressions</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions-2">regular expressions</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions-3">regular expressions</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions-4">regular expressions</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-regular-expressions-5">regular expressions</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-remap"><code>remap</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Remik-Ziemlinski">Remik Ziemlinski</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-remote-files">remote files</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-remote-files-1">remote files</a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rename-groups">rename groups</a>:</td><td> </td><td valign="top"><a href="#Moving-Groups">Moving Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-attributes">renaming attributes</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-attributes-1">renaming attributes</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-dimensions">renaming dimensions</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-dimensions-1">renaming dimensions</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-groups">renaming groups</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-variables">renaming variables</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-variables-1">renaming variables</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-renaming-variables-2">renaming variables</a>:</td><td> </td><td valign="top"><a href="#Regrid-MODIS-Data">Regrid MODIS Data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reporting-bugs">reporting bugs</a>:</td><td> </td><td valign="top"><a href="#Help-Requests-and-Bug-Reports">Help Requests and Bug Reports</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reshape-variables">reshape variables</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-restrict"><code>restrict</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reverse-data">reverse data</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reverse-dimensions">reverse dimensions</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reverse-dimensions-1">reverse dimensions</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reverse-dimensions-2">reverse dimensions</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-reverse_0028_0029">reverse()</a>:</td><td> </td><td valign="top"><a href="#Arrays-and-hyperslabs">Arrays and hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rew">‘<samp>rew</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Rich-Signell">Rich Signell</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rint"><var>rint</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rint_0028_0029"><code>rint()</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rms"><code>rms</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rmssdn"><code>rmssdn</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rmssdn_0028_0029">rmssdn()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-root_002dmean_002dsquare">root-mean-square</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Rorik-Peterson">Rorik Peterson</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-round"><var>round</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rounding">rounding</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rounding-1">rounding</a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-rounding-functions">rounding functions</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-RPM"><acronym>RPM</acronym></a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-running-average">running average</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Russ-Rew">Russ Rew</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Russ-Rew-1">Russ Rew</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-S">S</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-safeguards">safeguards</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-safeguards-1">safeguards</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scale_005ffactor"><code>scale_factor</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scale_005ffactor-1"><code>scale_factor</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scale_005ffactor-2"><code>scale_factor</code></a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scale_005ffactor-3"><code>scale_factor</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scale_005fformat"><var>scale_format</var></a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scaling">scaling</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scaling-1">scaling</a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Scientific-Data-Operators">Scientific Data Operators</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scl">‘<samp>scl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Scott-Capps">Scott Capps</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scp"><code>scp</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-scp-1"><code>scp</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-script-file">script file</a>:</td><td> </td><td valign="top"><a href="#ncap2-netCDF-Arithmetic-Processor">ncap2 netCDF Arithmetic Processor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SDO"><acronym>SDO</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-seasonal-average">seasonal average</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-security">security</a>:</td><td> </td><td valign="top"><a href="#MD5-digests">MD5 digests</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SEIII"><acronym>SEIII</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-semi_002dcolon">semi-colon</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-separator">separator</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server">server</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server-1">server</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server-2">server</a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server-3">server</a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Server_002dSide-Distributed-Data-Reduction-_0026-Analysis">Server-Side Distributed Data Reduction & Analysis</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server_002dside-processing">server-side processing</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-server_002dside-processing-1">server-side processing</a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-set_005fmiss_0028_0029"><code>set_miss()</code></a>:</td><td> </td><td valign="top"><a href="#Missing-values-ncap2">Missing values ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sftp"><code>sftp</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sftp-1"><code>sftp</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SGI"><acronym>SGI</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Sh-shell">Sh shell</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shared-memory-machines">shared memory machines</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shared-memory-parallelism">shared memory parallelism</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell">shell</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell-1">shell</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell-2">shell</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell-3">shell</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell-4">shell</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-shell-5">shell</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-signedness"><var>signedness</var></a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-significand">significand</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-significand-1">significand</a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sin"><var>sin</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sine-function">sine function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-single_002dprecision">single-precision</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sinh"><var>sinh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-size_0028_0029">size()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SLD-_0028Swath_002dlike-Data_0029"><acronym>SLD</acronym> (Swath-like Data)</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SMP"><acronym>SMP</acronym></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sort"><code>sort</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sort-alphabetically">sort alphabetically</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sort-alphabetically-1">sort alphabetically</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-source-code">source code</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-spatial-distribution">spatial distribution</a>:</td><td> </td><td valign="top"><a href="#Global-Distribution-of-Long_002dterm-Average">Global Distribution of Long-term Average</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-special-attributes">special attributes</a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-special-characters">special characters</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed">speed</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-1">speed</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-2">speed</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-3">speed</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-4">speed</a>:</td><td> </td><td valign="top"><a href="#Metadata-Optimization">Metadata Optimization</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-5">speed</a>:</td><td> </td><td valign="top"><a href="#Missing-Values">Missing Values</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-6">speed</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-speed-7">speed</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sqravg"><code>sqravg</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sqravg_0028_0029">sqravg()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sqrt"><code>sqrt</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sqrt-1"><var>sqrt</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-square-root-function">square root function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SSDDRA"><acronym>SSDDRA</acronym></a>:</td><td> </td><td valign="top"><a href="#Proposals-for-Institutional-Funding">Proposals for Institutional Funding</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SSH"><acronym>SSH</acronym></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-SSH-1"><acronym>SSH</acronym></a>:</td><td> </td><td valign="top"><a href="#Retaining-Retrieved-Files">Retaining Retrieved Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sshort_0028_0029">sshort()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-deviation">standard deviation</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-deviation-1">standard deviation</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-deviation-2">standard deviation</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-input">standard input</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-input-1">standard input</a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-input-2">standard input</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-input-3">standard input</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard-input-4">standard input</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-standard_005fname"><code>standard_name</code></a>:</td><td> </td><td valign="top"><a href="#Auxiliary-Coordinates">Auxiliary Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stat_0028_0029-system-call"><code>stat() system call</code></a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-statement">statement</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-static-linking">static linking</a>:</td><td> </td><td valign="top"><a href="#Libraries">Libraries</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin-1"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#File-List-Attributes">File List Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin-2"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#nces-netCDF-Ensemble-Statistics">nces netCDF Ensemble Statistics</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin-3"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin-4"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stdin-5"><code>stdin</code></a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Steve-Emmerson">Steve Emmerson</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride">stride</a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-1">stride</a>:</td><td> </td><td valign="top"><a href="#Stride">Stride</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-2">stride</a>:</td><td> </td><td valign="top"><a href="#Multislabs">Multislabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-3">stride</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-4">stride</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-5">stride</a>:</td><td> </td><td valign="top"><a href="#ncra-netCDF-Record-Averager">ncra netCDF Record Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-6">stride</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stride-7">stride</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-strings">strings</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Stu-Muller">Stu Muller</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-stub">stub</a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-sub_002dcycle">sub-cycle</a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subcycle">subcycle</a>:</td><td> </td><td valign="top"><a href="#Subcycle">Subcycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subsetting">subsetting</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subsetting-1">subsetting</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Coordinate-Variables">Subsetting Coordinate Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subsetting-2">subsetting</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subsetting-3">subsetting</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subsetting-4">subsetting</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subtract"><code>subtract</code></a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subtracting-data">subtracting data</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subtraction">subtraction</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-subtraction-1">subtraction</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-summary">summary</a>:</td><td> </td><td valign="top"><a href="#Summary">Summary</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Sun">Sun</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-swap-space">swap space</a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-swap-space-1">swap space</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-swap-space-2">swap space</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Swath_002dlike-Data-_0028SLD_0029">Swath-like Data (<acronym>SLD</acronym>)</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-switches">switches</a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-symbolic-links">symbolic links</a>:</td><td> </td><td valign="top"><a href="#Symbolic-Links">Symbolic Links</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-symbolic-links-1">symbolic links</a>:</td><td> </td><td valign="top"><a href="#Statistics-vs_002e-Concatenation">Statistics vs. Concatenation</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-symbolic-links-2">symbolic links</a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-symbolic-links-3">symbolic links</a>:</td><td> </td><td valign="top"><a href="#ncbo-netCDF-Binary-Operator">ncbo netCDF Binary Operator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-symbolic-links-4">symbolic links</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-synchronous-file-access">synchronous file access</a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-synonym">synonym</a>:</td><td> </td><td valign="top"><a href="#Symbolic-Links">Symbolic Links</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-syntax">syntax</a>:</td><td> </td><td valign="top"><a href="#Syntax-of-ncap2-statements">Syntax of ncap2 statements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-System-calls">System calls</a>:</td><td> </td><td valign="top"><a href="#Buffer-sizes">Buffer sizes</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-T">T</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Takeshi-Enomoto">Takeshi Enomoto</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-tan"><var>tan</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-tanh"><var>tanh</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-temporary-files">temporary files</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-temporary-files-1">temporary files</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-temporary-output-files">temporary output files</a>:</td><td> </td><td valign="top"><a href="#Temporary-Output-Files">Temporary Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-temporary-output-files-1">temporary output files</a>:</td><td> </td><td valign="top"><a href="#RAM-disks">RAM disks</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-temporary-output-files-2">temporary output files</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-TeXinfo">TeXinfo</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-threads">threads</a>:</td><td> </td><td valign="top"><a href="#Memory-Requirements">Memory Requirements</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-threads-1">threads</a>:</td><td> </td><td valign="top"><a href="#Single-and-Multi_002dfile-Operators">Single and Multi-file Operators</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-threads-2">threads</a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-thr_005fnbr"><var>thr_nbr</var></a>:</td><td> </td><td valign="top"><a href="#OpenMP-Threading">OpenMP Threading</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time"><code>time</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time-1"><code>time</code></a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Examples-ncap2">Examples ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-1">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-2">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Daily-data-in-one-file">Daily data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-3">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-4">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Monthly-data-in-one-file">Monthly data in one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-5">time-averaging</a>:</td><td> </td><td valign="top"><a href="#One-time-point-one-file">One time point one file</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-6">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Global-Distribution-of-Long_002dterm-Average">Global Distribution of Long-term Average</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-7">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_002daveraging-8">time-averaging</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-timestamp">timestamp</a>:</td><td> </td><td valign="top"><a href="#History-Attribute">History Attribute</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-time_005foffset"><code>time_offset</code></a>:</td><td> </td><td valign="top"><a href="#ARM-Conventions">ARM Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-total">total</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-transpose">transpose</a>:</td><td> </td><td valign="top"><a href="#C-and-Fortran-Index-Conventions">C and Fortran Index Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-transpose-1">transpose</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-TREFHT"><acronym>TREFHT</acronym></a>:</td><td> </td><td valign="top"><a href="#Promoting-Single_002dprecision-to-Double">Promoting Single-precision to Double</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-trunc"><var>trunc</var></a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-trunc_0028_0029"><code>trunc()</code></a>:</td><td> </td><td valign="top"><a href="#Automatic-type-conversion">Automatic type conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-truncate-_0028groups_0029">truncate (groups)</a>:</td><td> </td><td valign="top"><a href="#Flattening-Groups">Flattening Groups</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-truncation-function">truncation function</a>:</td><td> </td><td valign="top"><a href="#Intrinsic-mathematical-methods">Intrinsic mathematical methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-truth-condition">truth condition</a>:</td><td> </td><td valign="top"><a href="#Mask-condition">Mask condition</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-truth-condition-1">truth condition</a>:</td><td> </td><td valign="top"><a href="#Normalization-and-Integration">Normalization and Integration</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ttl"><code>ttl</code></a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ttl_0028_0029">ttl()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-type-conversion">type conversion</a>:</td><td> </td><td valign="top"><a href="#Type-Conversion">Type Conversion</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-type_0028_0029">type()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-U">U</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ubyte_0028_0029">ubyte()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UDUnits">UDUnits</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UDUnits-1">UDUnits</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UDUnits-2">UDUnits</a>:</td><td> </td><td valign="top"><a href="#CF-Conventions">CF Conventions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-uint_0028_0029">uint()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ulimit"><code>ulimit</code></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unary-operations">unary operations</a>:</td><td> </td><td valign="top"><a href="#Memory-for-ncap2">Memory for ncap2</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-underlying-file-format">underlying file format</a>:</td><td> </td><td valign="top"><a href="#Determining-File-Format">Determining File Format</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNICOS"><acronym>UNICOS</acronym></a>:</td><td> </td><td valign="top"><a href="#Large-Datasets">Large Datasets</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Unidata">Unidata</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Unidata-1">Unidata</a>:</td><td> </td><td valign="top"><a href="#netCDF2_002f3_002f4-and-HDF4_002f5-Support">netCDF2/3/4 and HDF4/5 Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Unidata-2">Unidata</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-union">union</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-union-1">union</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-union-of-files">union of files</a>:</td><td> </td><td valign="top"><a href="#Appending-Variables">Appending Variables</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unit64_0028_0029">unit64()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units-1"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units-2"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units-3"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units-4"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-units-5"><code>units</code></a>:</td><td> </td><td valign="top"><a href="#ncflint-netCDF-File-Interpolator">ncflint netCDF File Interpolator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX-1"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX-2"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX-3"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Command-Line-Options">Command Line Options</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX-4"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-UNIX-5"><acronym>UNIX</acronym></a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unlimited-dimension">unlimited dimension</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unmap"><code>unmap</code></a>:</td><td> </td><td valign="top"><a href="#Sort-methods">Sort methods</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpack_0028_0029">unpack()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpack_0028x_0029"><code>unpack(x)</code></a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpacking">unpacking</a>:</td><td> </td><td valign="top"><a href="#OPeNDAP">OPeNDAP</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpacking-1">unpacking</a>:</td><td> </td><td valign="top"><a href="#Packed-data">Packed data</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpacking-2">unpacking</a>:</td><td> </td><td valign="top"><a href="#ncecat-netCDF-Ensemble-Concatenator">ncecat netCDF Ensemble Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpacking-3">unpacking</a>:</td><td> </td><td valign="top"><a href="#ncpdq-netCDF-Permute-Dimensions-Quickly">ncpdq netCDF Permute Dimensions Quickly</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-unpacking-4">unpacking</a>:</td><td> </td><td valign="top"><a href="#ncrcat-netCDF-Record-Concatenator">ncrcat netCDF Record Concatenator</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-URL"><acronym>URL</acronym></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-User-Guide"><cite>User Guide</cite></a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-ushort_0028_0029">ushort()</a>:</td><td> </td><td valign="top"><a href="#Methods-and-functions">Methods and functions</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-V">V</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-value-list">value list</a>:</td><td> </td><td valign="top"><a href="#Attributes">Attributes</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-variable-names">variable names</a>:</td><td> </td><td valign="top"><a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-variables_002c-appending">variables, appending</a>:</td><td> </td><td valign="top"><a href="#Annual-Average-over-Regions">Annual Average over Regions</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-variance">variance</a>:</td><td> </td><td valign="top"><a href="#Operation-Types">Operation Types</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-version">version</a>:</td><td> </td><td valign="top"><a href="#Operator-Version">Operator Version</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Vista-_0028Microsoft-operating-system_0029">Vista (Microsoft operating system)</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-W">W</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Weather-and-Research-Forecast-_0028WRF_0029-Model">Weather and Research Forecast (<acronym>WRF</acronym>) Model</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-weighted-average">weighted average</a>:</td><td> </td><td valign="top"><a href="#ncwa-netCDF-Weighted-Averager">ncwa netCDF Weighted Averager</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-weighted-average-1">weighted average</a>:</td><td> </td><td valign="top"><a href="#Monthly-Cycle">Monthly Cycle</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Wenshan-Wang">Wenshan Wang</a>:</td><td> </td><td valign="top"><a href="#Contributors">Contributors</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wget"><code>wget</code></a>:</td><td> </td><td valign="top"><a href="#Remote-storage">Remote storage</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-where_0028_0029">where()</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-while_0028_0029">while()</a>:</td><td> </td><td valign="top"><a href="#Loops">Loops</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-whitespace">whitespace</a>:</td><td> </td><td valign="top"><a href="#UDUnits-Support">UDUnits Support</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wildcards">wildcards</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wildcards-1">wildcards</a>:</td><td> </td><td valign="top"><a href="#Subsetting-Files">Subsetting Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wildcards-2">wildcards</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wildcards-3">wildcards</a>:</td><td> </td><td valign="top"><a href="#ncatted-netCDF-Attribute-Editor">ncatted netCDF Attribute Editor</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-WIN32"><code>WIN32</code></a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Windows">Windows</a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Windows-1">Windows</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wrapped-coordinates">wrapped coordinates</a>:</td><td> </td><td valign="top"><a href="#Hyperslabs">Hyperslabs</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wrapped-coordinates-1">wrapped coordinates</a>:</td><td> </td><td valign="top"><a href="#Wrapped-Coordinates">Wrapped Coordinates</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wrapped-coordinates-2">wrapped coordinates</a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wrapped-coordinates-3">wrapped coordinates</a>:</td><td> </td><td valign="top"><a href="#Filters-for-ncks">Filters for <code>ncks</code></a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-wrapped-filenames">wrapped filenames</a>:</td><td> </td><td valign="top"><a href="#Specifying-Input-Files">Specifying Input Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-WRF"><acronym>WRF</acronym></a>:</td><td> </td><td valign="top"><a href="#Irregular-grids">Irregular grids</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-WRF-_0028Weather-and-Research-Forecast-Model_0029"><acronym>WRF</acronym> (Weather and Research Forecast Model)</a>:</td><td> </td><td valign="top"><a href="#Where-statement">Where statement</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-WWW-documentation"><acronym>WWW</acronym> documentation</a>:</td><td> </td><td valign="top"><a href="#Availability">Availability</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-X">X</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xargs"><code>xargs</code></a>:</td><td> </td><td valign="top"><a href="#Large-Numbers-of-Files">Large Numbers of Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xargs-1"><code>xargs</code></a>:</td><td> </td><td valign="top"><a href="#Specifying-Output-Files">Specifying Output Files</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xlC"><code>xlC</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xlc"><code>xlc</code></a>:</td><td> </td><td valign="top"><a href="#Compatability">Compatability</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-XML"><acronym>XML</acronym></a>:</td><td> </td><td valign="top"><a href="#ncks-netCDF-Kitchen-Sink">ncks netCDF Kitchen Sink</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-XP-_0028Microsoft-operating-system_0029"><acronym>XP</acronym> (Microsoft operating system)</a>:</td><td> </td><td valign="top"><a href="#Windows-Operating-System">Windows Operating System</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xpl">‘<samp>xpl</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xst">‘<samp>xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-xst-1">‘<samp>xst</samp>’</a>:</td><td> </td><td valign="top"><a href="#Chunking">Chunking</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-Y">Y</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Yorick">Yorick</a>:</td><td> </td><td valign="top"><a href="#Philosophy">Philosophy</a></td></tr>
-<tr><td></td><td valign="top"><a href="#index-Yorick-1">Yorick</a>:</td><td> </td><td valign="top"><a href="#Performance">Performance</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-<tr><th><a name="General-Index_cp_letter-Z">Z</a></th><td></td><td></td></tr>
-<tr><td></td><td valign="top"><a href="#index-zlib"><code>zlib</code></a>:</td><td> </td><td valign="top"><a href="#Compression">Compression</a></td></tr>
-<tr><td colspan="4"> <hr></td></tr>
-</table>
-<table><tr><th valign="top">Jump to: </th><td><a class="summary-letter" href="#General-Index_cp_symbol-1"><b>"</b></a>
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-
-<br>
-<a class="summary-letter" href="#General-Index_cp_letter-A"><b>A</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-B"><b>B</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-C"><b>C</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-D"><b>D</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-E"><b>E</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-F"><b>F</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-G"><b>G</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-H"><b>H</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-I"><b>I</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-J"><b>J</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-K"><b>K</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-L"><b>L</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-M"><b>M</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-N"><b>N</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-O"><b>O</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-P"><b>P</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Q"><b>Q</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-R"><b>R</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-S"><b>S</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-T"><b>T</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-U"><b>U</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-V"><b>V</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-W"><b>W</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-X"><b>X</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Y"><b>Y</b></a>
-
-<a class="summary-letter" href="#General-Index_cp_letter-Z"><b>Z</b></a>
-
-</td></tr></table>
-
-<div class="footnote">
-<hr>
-<h4 class="footnotes-heading">Footnotes</h4>
-
-<h3><a name="FOOT1" href="#DOCF1">(1)</a></h3>
-<p>To produce these formats, <samp>nco.texi</samp> was simply run through the
-freely available programs <code>texi2dvi</code>, <code>dvips</code>,
-<code>texi2html</code>, and <code>makeinfo</code>.
-Due to a bug in TeX, the resulting Postscript file, <samp>nco.ps</samp>,
-contains the Table of Contents as the final pages.
-Thus if you print <samp>nco.ps</samp>, remember to insert the Table of
-Contents after the cover sheet before you staple the manual.
-</p>
-<h3><a name="FOOT2" href="#DOCF2">(2)</a></h3>
-<p>The ‘<samp>_BSD_SOURCE</samp>’ token is required on some Linux platforms where
-<code>gcc</code> dislikes the network header files like
-<samp>netinet/in.h</samp>).</p>
-<h3><a name="FOOT3" href="#DOCF3">(3)</a></h3>
-<p><acronym>NCO</acronym> may still build with an
-<acronym>ANSI</acronym> or <acronym>ISO</acronym> C89 or C94/95-compliant compiler if the
-C <span class="nolinebreak">pre-processor</span><!-- /@w --> undefines the <code>restrict</code> type qualifier, e.g.,
-by invoking the compiler with ‘<samp>-Drestrict=''</samp>’.</p>
-<h3><a name="FOOT4" href="#DOCF4">(4)</a></h3>
-<p>The Cygwin package is available from<br>
-<code>http://sourceware.redhat.com/cygwin</code><br>
-<a name="index-gcc-1"></a>
-<a name="index-g_002b_002b-1"></a>
-Currently, Cygwin 20.x<!-- /@w --> comes with the <acronym>GNU</acronym> C/C++
-compilers (<code>gcc</code>, <code>g++</code>.
-These <acronym>GNU</acronym> compilers may be used to build the netCDF
-distribution itself.</p>
-<h3><a name="FOOT5" href="#DOCF5">(5)</a></h3>
-<p>The <code>ldd</code> command, if it is available on your system,
-will tell you where the executable is looking for each dynamically
-loaded library. Use, e.g., <code>ldd `which nces`</code>.</p>
-<h3><a name="FOOT6" href="#DOCF6">(6)</a></h3>
-<p>The Hierarchical Data Format, or <acronym>HDF</acronym>, is another
-self-describing data format similar to, but more elaborate than,
-netCDF.
-<acronym>HDF</acronym> comes in two flavors, <acronym>HDF4</acronym> and <acronym>HDF5</acronym>.
-Often people use the shorthand <acronym>HDF</acronym> to refer to the older
-format <acronym>HDF4</acronym>.
-People almost always use <acronym>HDF5</acronym> to refer to <acronym>HDF5</acronym>.</p>
-<h3><a name="FOOT7" href="#DOCF7">(7)</a></h3>
-<p>One must link the <acronym>NCO</acronym> code to the <acronym>HDF4</acronym>
-<acronym>MFHDF</acronym> library instead of the usual netCDF library.
-Apparently ‘<samp>MF</samp>’ stands for Multi-file not for Mike Folk.
-In any case, until about 2007 the <acronym>MFHDF</acronym> library only supported
-netCDF2<!-- /@w --> calls.
-Most people will never again install <acronym>NCO</acronym> 1.2.x and so will
-never use <acronym>NCO</acronym> to write <acronym>HDF4</acronym> files.
-It is simply too much trouble.</p>
-<h3><a name="FOOT8" href="#DOCF8">(8)</a></h3>
-<p>The procedure for doing this is documented at
-<a href="http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html">http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html</a>.</p>
-<h3><a name="FOOT9" href="#DOCF9">(9)</a></h3>
-<p>Prior to <acronym>NCO</acronym> version 4.4.0 (January, 2014), we recommended the
-<code>ncl_convert2nc</code> tool to convert <acronym>HDF</acronym> to netCDF3 when
-both these are true: 1. You<!-- /@w --> must have netCDF3 and 2. the<!-- /@w -->
-<acronym>HDF</acronym> file contains netCDF4 atomic types.
-More recent versions of <acronym>NCO</acronym> handle this problem fine, and
-include other advantages so we no longer recommend
-<code>ncl_convert2nc</code> because <code>ncks</code> is faster and more
-space-efficient.
-Both automatically convert netCDF4 types to netCDF3 types, yet
-<code>ncl_convert2nc</code> cannot produce full netCDF4 files.
-In contrast, <code>ncks</code> will happily convert <acronym>HDF</acronym> straight
-to netCDF4 files with netCDF4 types.
-Hence <code>ncks</code> can and does preserve the variable types.
-Unsigned bytes stay unsigned bytes.
-64-bit integers stay 64-bit integers.
-Strings stay strings.
-Hence, <code>ncks</code> conversions often result in smaller files than
-<code>ncl_convert2nc</code> conversions.
-A tool useful for converting netCDF3 to netCDF4 files is the Python
-script <code>nc3tonc4</code> by Jeff Whitaker.</p>
-<h3><a name="FOOT10" href="#DOCF10">(10)</a></h3>
-<p>Two real-world examples: <acronym>NCO</acronym> translates the
-<acronym>NASA</acronym> <acronym>CERES</acronym> dimension <code>(FOV) Footprints</code> to
-<code>_FOV_ Footprints</code>, and
-<code>Cloud & Aerosol, Cloud Only, Clear Sky w/Aerosol, and Clear Sky</code>
-(yes, the dimension name includes whitespace and special characters) to
-<code>Cloud & Aerosol, Cloud Only, Clear Sky w_Aerosol, and Clear Sky</code>
-<code>ncl_convert2nc</code> makes the element name netCDF-safe in a
-slightly different manner, and also stores the original name in the
-<code>hdf_name</code> attribute.</p>
-<h3><a name="FOOT11" href="#DOCF11">(11)</a></h3>
-<p>The <code>ncrename</code> and <code>ncatted</code> operators are
-exceptions to this rule.
-See <a href="#ncrename-netCDF-Renamer">ncrename netCDF Renamer</a>.</p>
-<h3><a name="FOOT12" href="#DOCF12">(12)</a></h3>
-<p>The OS-specific system move command is used.
-This is <code>mv</code> for <acronym>UNIX</acronym>, and <code>move</code> for Windows.</p>
-<h3><a name="FOOT13" href="#DOCF13">(13)</a></h3>
-<p>The terminology <em>merging</em> is
-reserved for an (unwritten) operator which replaces hyperslabs of a
-variable in one file with hyperslabs of the same variable from another
-file</p>
-<h3><a name="FOOT14" href="#DOCF14">(14)</a></h3>
-<p>Yes, the terminology is confusing.
-By all means mail me if you think of a better nomenclature.
-Should <acronym>NCO</acronym> use <em>paste</em> instead of <em>append</em>?
-</p>
-<h3><a name="FOOT15" href="#DOCF15">(15)</a></h3>
-<p>Currently
-<code>nces</code> and <code>ncrcat</code> are symbolically linked to the
-<code>ncra</code> executable, which behaves slightly differently based on
-its invocation name (i.e., ‘<samp>argv[0]</samp>’).
-These three operators share the same source code, and merely have
-different inner loops.</p>
-<h3><a name="FOOT16" href="#DOCF16">(16)</a></h3>
-<p>The third averaging operator, <code>ncwa</code>, is the most
-sophisticated averager in <acronym>NCO</acronym>.
-However, <code>ncwa</code> is in a different class than <code>ncra</code> and
-<code>nces</code> because it operates on a single file per invocation (as
-opposed to multiple files).
-On that single file, however, <code>ncwa</code> provides a richer set of
-averaging options—including weighting, masking, and broadcasting.</p>
-<h3><a name="FOOT17" href="#DOCF17">(17)</a></h3>
-<p>The exact length which exceeds the operating system internal
-limit for command line lengths varies from <acronym>OS</acronym> to <acronym>OS</acronym>
-and from shell to shell.
-<acronym>GNU</acronym> <code>bash</code> may not have any arbitrary fixed limits to the
-size of command line arguments.
-Many <acronym>OS</acronym>s cannot handle command line arguments (including
-results of file globbing) exceeding 4096 characters.</p>
-<h3><a name="FOOT18" href="#DOCF18">(18)</a></h3>
-<p>If a <code>getopt_long</code> function cannot be found on the system,
-<acronym>NCO</acronym> will use the <code>getopt_long</code> from the
-<code>my_getopt</code> package by Benjamin Sittler
-<a href="mailto:bsittler at iname.com">bsittler at iname.com</a>.
-This is <acronym>BSD</acronym>-licensed software available from
-<a href="http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt">http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt</a>.</p>
-<h3><a name="FOOT19" href="#DOCF19">(19)</a></h3>
-<p>The ‘<samp>-n</samp>’ option is a backward-compatible superset of the
-<code>NINTAP</code> option from the <acronym>NCAR</acronym> <acronym>CCM</acronym> Processor.
-The <acronym>CCM</acronym> Processor was custom-written Fortran code maintained
-for many years by Lawrence Buja at <acronym>NCAR</acronym>, and phased-out in
-the late 1990s.
-<acronym>NCO</acronym> stole some ideas, like <code>NINTAP</code>-functionality,
-from the <acronym>CCM</acronym> Processor capabilities.</p>
-<h3><a name="FOOT20" href="#DOCF20">(20)</a></h3>
-<p><acronym>NCO</acronym> does not implement command line options to
-specify <acronym>FTP</acronym> logins and passwords because copying those data
-into the <code>history</code> global attribute in the output file (done by
-default) poses an unacceptable security risk.
-</p>
-<h3><a name="FOOT21" href="#DOCF21">(21)</a></h3>
-<p>The <code>hsi</code> command must be in the user’s path in one of
-the following directories: <code>/usr/local/bin</code>, <code>/opt/hpss/bin</code>,
-or <code>/ncar/opt/hpss/hsi</code>.
-Tell us if the <acronym>HPSS</acronym> installation at your site places the
-<code>hsi</code> command in a different location, and we will add that
-location to the list of acceptable paths to search for <code>hsi</code>.
-</p>
-<h3><a name="FOOT22" href="#DOCF22">(22)</a></h3>
-<p><acronym>NCO</acronym> supported the old <acronym>NCAR</acronym> Mass Storage
-System (<acronym>MSS</acronym>) until version 4.0.7 in April, 2011.
-<acronym>NCO</acronym> supported <acronym>MSS</acronym>-retrievals via a variety of
-mechanisms including the <code>msread</code>, <code>msrcp</code>, and
-<code>nrnet</code> commands invoked either automatically or with sentinels
-like <code>ncks -p mss:/ZENDER/nco -l . in.nc</code>.
-Once the <acronym>MSS</acronym> was decommissioned in March, 2011, support for
-these retrieval mechanisms was replaced by support for <acronym>HPSS</acronym>
-in <acronym>NCO</acronym>.
-</p>
-<h3><a name="FOOT23" href="#DOCF23">(23)</a></h3>
-<a name="index-NVODS"></a>
-<a name="index-National-Virtual-Ocean-Data-System"></a>
-<a name="index-open-source-1"></a>
-<p><acronym>DODS</acronym> is being deprecated because it is ambiguous, referring
-both to a protocol and to a collection of (oceanography) data.
-It is superceded by two terms.
-<acronym>DAP</acronym> is the discipline-neutral Data Access Protocol at the
-heart of <acronym>DODS</acronym>.
-The National Virtual Ocean Data System (<acronym>NVODS</acronym>) refers to the
-collection of oceanography data and oceanographic extensions to
-<acronym>DAP</acronym>.
-In other words, <acronym>NVODS</acronym> is implemented with <acronym>OPeNDAP</acronym>.
-<acronym>OPeNDAP</acronym> is <em>also</em> the open source project which
-maintains, develops, and promulgates the <acronym>DAP</acronym> standard.
-<acronym>OPeNDAP</acronym> and <acronym>DAP</acronym> really are interchangeable.
-Got it yet?</p>
-<h3><a name="FOOT24" href="#DOCF24">(24)</a></h3>
-<p>Automagic support for <acronym>DODS</acronym> version 3.2.x was deprecated in
-December, 2003 after <acronym>NCO</acronym> version 2.8.4.
-<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.4.x commenced in
-December, 2003, with <acronym>NCO</acronym> version 2.8.5.
-<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.5.x commenced in
-June, 2005, with <acronym>NCO</acronym> version 3.0.1.
-<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.6.x commenced in
-June, 2006, with <acronym>NCO</acronym> version 3.1.3.
-<acronym>NCO</acronym> support for <acronym>OPeNDAP</acronym> versions 3.7.x commenced in
-January, 2007, with <acronym>NCO</acronym> version 3.1.9.</p>
-<h3><a name="FOOT25" href="#DOCF25">(25)</a></h3>
-<p>The minimal set of libraries required to build <acronym>NCO</acronym> as
-<acronym>OPeNDAP</acronym> clients, where <acronym>OPeNDAP</acronym> is supplied as a
-separate library apart from <samp>libnetcdf.a</samp>, are, in link order,
-<samp>libnc-dap.a</samp>, <samp>libdap.a</samp>, and
-<samp>libxml2</samp> and <samp>libcurl.a</samp>.</p>
-<h3><a name="FOOT26" href="#DOCF26">(26)</a></h3>
-<p>We are most familiar with the <acronym>OPeNDAP</acronym> ability to enable
-network-transparent data access.
-<a name="index-constraint-expressions"></a>
-<a name="index-server_002dside-processing"></a>
-<acronym>OPeNDAP</acronym> has many other features, including sophisticated
-hyperslabbing and server-side processing via <em>constraint expressions</em>.
-If you know more about this, please consider writing a section
-on “<acronym>OPeNDAP</acronym> Capabilities of Interest to <acronym>NCO</acronym> Users”
-for incorporation in the <cite>NCO User Guide</cite>.</p>
-<h3><a name="FOOT27" href="#DOCF27">(27)</a></h3>
-<p>For example, <acronym>DAP</acronym> servers do not like variables with
-periods (“.”) in their names even though this is perfectly legal with
-netCDF.
-Such names may cause the <acronym>DAP</acronym> service to fail because
-<acronym>DAP</acronym> interprets the period as structure delimiter in an
-<acronym>HTTP</acronym> query string.</p>
-<h3><a name="FOOT28" href="#DOCF28">(28)</a></h3>
-<p>The reason (and mnemonic) for ‘<samp>-7</samp>’ is that <code>NETCDF4_CLASSIC</code>
-files include great features of both netCDF3 (compatibility) and
-netCDF4 (compression, chunking) and, well, <em>3+4=7</em>.</p>
-<h3><a name="FOOT29" href="#DOCF29">(29)</a></h3>
-<p>The switches ‘<samp>-5</samp>’, ‘<samp>--5</samp>’, and ‘<samp>pnetcdf</samp>’ are
-reserved for PnetCDF files, i.e., <code>NC_FORMAT_PNETCDF</code>.
-Such files are similar to netCDF3 classic files, yet also support
-64-bit offsets and the additional netCDF4 atomic types.</p>
-<h3><a name="FOOT30" href="#DOCF30">(30)</a></h3>
-<p>Linux and <acronym>AIX</acronym> do support <acronym>LFS</acronym>.</p>
-<h3><a name="FOOT31" href="#DOCF31">(31)</a></h3>
-<p>Intersection-mode can also be explicitly invoked with the ‘<samp>--nsx</samp>’
-or ‘<samp>--intersection</samp>’ switches.
-These switches are supplied for clarity and consistency and do
-absolutely nothing since intersection-mode is the default.</p>
-<h3><a name="FOOT32" href="#DOCF32">(32)</a></h3>
-<p>Note that the <samp>-3</samp> switch should appear <em>after</em> the
-<samp>-G</samp> and <samp>-g</samp> switches.
-This is due to an artifact of the <acronym>GPE</acronym> implementation which we
-wish to remove in the future.</p>
-<h3><a name="FOOT33" href="#DOCF33">(33)</a></h3>
-<p>CFchecker is developed by Michael Decker and Martin Schultz at
-Forschungszentrum Jülich and distributed at
-<a href="https://bitbucket.org/mde_/cfchecker">https://bitbucket.org/mde_/cfchecker</a>.</p>
-<h3><a name="FOOT34" href="#DOCF34">(34)</a></h3>
-<p>When originally released in 2012 this was called the
-<em>duration feature</em>, and was abbreviated <acronym>DRN</acronym>.</p>
-<h3><a name="FOOT35" href="#DOCF35">(35)</a></h3>
-<p>The old functionality, i.e., where the ignored values are indicated by
-<code>missing_value</code> not <code>_FillValue</code>, may still be selected
-<em>at <acronym>NCO</acronym> build time</em> by compiling <acronym>NCO</acronym>
-with the token definition
-<kbd>CPPFLAGS='-UNCO_USE_FILL_VALUE'</kbd>.
-</p>
-<h3><a name="FOOT36" href="#DOCF36">(36)</a></h3>
-<p>For example, the <acronym>DOE</acronym> <acronym>ARM</acronym> program often
-uses <var>att_type</var> = <code>NC_CHAR</code> and <var>_FillValue</var> =
-‘<samp>-99999.</samp>’.
-</p>
-<h3><a name="FOOT37" href="#DOCF37">(37)</a></h3>
-<p>This behavior became the default in November 2014 with
-<acronym>NCO</acronym> version 4.4.7.
-Prior versions would always use netCDF default chunking in the output
-file when no <acronym>NCO</acronym> chunking switches were activated, regardless
-of the chunking in the input file.</p>
-<h3><a name="FOOT38" href="#DOCF38">(38)</a></h3>
-<p>Rounding is performed by the internal math library <code>rint()</code>
-family of functions that were standardized in C99.
-The exact alorithm employed is
-<em><var>val</var> := rint(<var>scale</var>*<var>val</var>)/<var>scale</var></em> where
-<var>scale</var> is the nearest power of 2<!-- /@w --> that exceeds
-<em>10**<var>prc</var></em>, and the inverse of <var>scale</var> is used when
-<em><var>prc</var> < 0</em>.
-For <em><var>ppc</var> = 3</em> or <em><var>ppc</var> = -2</em>, for example, we have
-<em><var>scale</var> = 1024</em> and <em><var>scale</var> = 1/128</em>.</p>
-<h3><a name="FOOT39" href="#DOCF39">(39)</a></h3>
-<p>The <code>nc3tonc4</code> tool by Jeff Whitaker inspired
-<acronym>NCO</acronym> to implement <acronym>PPC</acronym>.
-<acronym>NCO</acronym> implements a different <acronym>DSD</acronym> algorithm than
-<code>nc3tonc4</code>, and produces slightly different (not bit-for-bit)
-though self-consistent and equivalent results.
-<code>nc3tonc4</code> records the precision of its <acronym>DSD</acronym> algorithm
-in the attribute <code>least_significant_digit</code> and <acronym>NCO</acronym>
-does the same for consistency.</p>
-<h3><a name="FOOT40" href="#DOCF40">(40)</a></h3>
-<p>The artificial dataset employed is one million evenly spaced
-values from 1.0–2.0.
-The analysis data are <em>N=13934592</em> values of the temperature field
-from the <acronym>NASA</acronym> <acronym>MERRA</acronym> analysis of 20130601.</p>
-<h3><a name="FOOT41" href="#DOCF41">(41)</a></h3>
-<p>On modern Linux systems the block size defaults to 8192 B<!-- /@w -->.
-The GLADE filesystem at NCAR has a block size of 512 kB<!-- /@w -->.</p>
-<h3><a name="FOOT42" href="#DOCF42">(42)</a></h3>
-<p>Although not a part of the standard, <acronym>NCO</acronym> enforces
-the policy that the <code>_FillValue</code> attribute, if any, of a packed
-variable is also stored at the original precision.</p>
-<h3><a name="FOOT43" href="#DOCF43">(43)</a></h3>
-<p><em>32767 = 2^15-1</em>
-</p>
-<h3><a name="FOOT44" href="#DOCF44">(44)</a></h3>
-<p>Operators began performing automatic type conversions before
-arithmetic in <acronym>NCO</acronym> version 1.2<!-- /@w -->, August, 2000.
-Previous versions never performed unnecessary type conversion for
-arithmetic.</p>
-<h3><a name="FOOT45" href="#DOCF45">(45)</a></h3>
-<a name="index-C-language-2"></a>
-<p>The actual type conversions with trunction were handled by intrinsic
-type conversion, so the <code>trunc()</code> function was never explicitly
-called, although the results would be the same if it were.</p>
-<h3><a name="FOOT46" href="#DOCF46">(46)</a></h3>
-<p>According to Wikipedia’s summary of <acronym>IEEE</acronym>
-standard 754<!-- /@w -->, “If a decimal string with at most 6 significant<!-- /@w -->
-digits is converted to <acronym>IEEE</acronym> 754<!-- /@w --> single-precision and then
-converted back to the same number of significant decimal, then the final
-string should match the original; and if an <acronym>IEEE</acronym> 754<!-- /@w -->
-single-precision is converted to a decimal string with at leastn 9<!-- /@w -->
-significant decimal and then converted back to single, then the final
-number must match the original”.</p>
-<h3><a name="FOOT47" href="#DOCF47">(47)</a></h3>
-<p>According to Wikipedia’s summary of <acronym>IEEE</acronym>
-standard 754<!-- /@w -->, “If a decimal string with at most 15 significant<!-- /@w -->
-digits is converted to <acronym>IEEE</acronym> 754<!-- /@w --> double-precision
-representation and then converted back to a string with the same number
-of significant digits, then the final string should match the original;
-and if an <acronym>IEEE</acronym> 754<!-- /@w --> double precision is converted to a
-decimal string with at least 17 significant<!-- /@w --> digits and then
-converted back to double, then the final number must match the
-original”.</p>
-<h3><a name="FOOT48" href="#DOCF48">(48)</a></h3>
-<p>See page 21<!-- /@w --> in Section 1.2 of the First edition for this
-gem:
-</p><blockquote>
-<p>One does not need much experience in scientific computing to recognize
-that the implicit conversion rules are, in fact, sheer madness!
-In effect, they make it impossible to write efficient numerical
-programs.
-</p></blockquote>
-<h3><a name="FOOT49" href="#DOCF49">(49)</a></h3>
-<p>For example, the <acronym>CMIP5</acronym> archive tends to distribute
-monthly average timeseries in 50-year chunks.</p>
-<h3><a name="FOOT50" href="#DOCF50">(50)</a></h3>
-<a name="index-Michael-Prather"></a>
-<p>Thanks to Michael J.<!-- /@w --> Prather for explaining this to me.</p>
-<h3><a name="FOOT51" href="#DOCF51">(51)</a></h3>
-<p>The exception is appending/altering the attributes <code>x_op</code>,
-<code>y_op</code>, <code>z_op</code>, and <code>t_op</code> for variables which have been
-averaged across space and time dimensions.
-This feature is scheduled for future inclusion in <acronym>NCO</acronym>.
-</p>
-<h3><a name="FOOT52" href="#DOCF52">(52)</a></h3>
-<p>The <acronym>CF</acronym> conventions recommend <code>time</code> be stored in the
-format <var>time</var> since <var>base_time</var>, e.g., the <code>units</code>
-attribute of <code>time</code> might be
-‘<samp>days since 1992-10-8 15:15:42.5 -6:00</samp>’.
-A problem<!-- /@w --> with this format occurs when using <code>ncrcat</code> to
-concatenate multiple files, each with a different <var>base_time</var>.
-That is, any <code>time</code> values from files following the first file to
-be concatenated should be corrected to the <var>base_time</var> offset
-specified in the <code>units</code> attribute of <code>time</code> from the first
-file.
-The analogous problem has been fixed in <acronym>ARM</acronym> files
-(see <a href="#ARM-Conventions">ARM Conventions</a>) and could be fixed for <acronym>CF</acronym> files if
-there is sufficient lobbying.
-</p>
-<h3><a name="FOOT53" href="#DOCF53">(53)</a></h3>
-<p><code>ncap2</code> is the successor to <code>ncap</code> which was
-put into maintenance mode in November, 2006.
-This documentation refers to <code>ncap2</code>, which has a superset of
-the <code>ncap</code> functionality.
-Eventually <code>ncap</code> will be deprecated in favor <code>ncap2</code>.
-<code>ncap2</code> may be renamed <code>ncap</code> in 2013.</p>
-<h3><a name="FOOT54" href="#DOCF54">(54)</a></h3>
-<p>These are the <acronym>GSL</acronym> standard function names postfixed with
-<code>_e</code>.
-<acronym>NCO</acronym> calls these functions automatically, without the
-<acronym>NCO</acronym> command having to specifically indicate the <code>_e</code>
-function suffix.
-</p>
-<h3><a name="FOOT55" href="#DOCF55">(55)</a></h3>
-<p>ANSI C<!-- /@w --> compilers are guaranteed to support double-precision versions
-of these functions.
-These functions normally operate on netCDF variables of type <code>NC_DOUBLE</code>
-without having to perform intrinsic conversions.
-For example, <acronym>ANSI</acronym> compilers provide <code>sin</code> for the sine of C-type
-<code>double</code> variables.
-The <acronym>ANSI</acronym> standard does not require, but many compilers provide,
-an extended set of mathematical functions that apply to single
-(<code>float</code>) and quadruple (<code>long double</code>) precision variables.
-Using these functions (e.g., <code>sinf</code> for <code>float</code>,
-<code>sinl</code> for <code>long double</code>), when available, is (presumably)
-more efficient than casting variables to type <code>double</code>,
-performing the operation, and then re-casting.
-<acronym>NCO</acronym> uses the faster intrinsic functions when they are
-available, and uses the casting method when they are not.
-</p>
-<h3><a name="FOOT56" href="#DOCF56">(56)</a></h3>
-<p>Linux supports more of these intrinsic functions than
-other OSs.</p>
-<h3><a name="FOOT57" href="#DOCF57">(57)</a></h3>
-<p>Arithmetic comparisons to NaN and NaN-like numbers always
-return False, contrary to the behavior of all other numbers.
-This is difficult to inuit, yet is the behavior defined for NaN by
-<acronym>IEEE</acronym> 754<!-- /@w -->.
-Using NaN for the missing value in datasets is legal.
-We strongly discourage it.</p>
-<h3><a name="FOOT58" href="#DOCF58">(58)</a></h3>
-<p>A naked<!-- /@w --> (i.e., unprotected or unquoted) ‘<samp>*</samp>’ is a
-wildcard character.
-A naked<!-- /@w --> ‘<samp>-</samp>’ may confuse the command line parser.
-A naked<!-- /@w --> ‘<samp>+</samp>’ and ‘<samp>/</samp>’ are relatively harmless.</p>
-<h3><a name="FOOT59" href="#DOCF59">(59)</a></h3>
-<p>The widely used shell Bash correctly interprets all these
-special characters even when they are not quoted.
-That is, Bash does not prevent <acronym>NCO</acronym> from correctly interpreting
-the intended arithmetic operation when the following arguments are given
-(without quotes) to <code>ncbo</code>:
-‘<samp>--op_typ=+</samp>’, ‘<samp>--op_typ=-</samp>’, ‘<samp>--op_typ=*</samp>’,
-and ‘<samp>--op_typ=/</samp>’</p>
-<h3><a name="FOOT60" href="#DOCF60">(60)</a></h3>
-<p>The command to do this is ‘<samp>ln -s -f ncbo ncadd</samp>’</p>
-<h3><a name="FOOT61" href="#DOCF61">(61)</a></h3>
-<p>The command to do this is ‘<samp>alias ncadd='ncbo --op_typ=add'</samp>’</p>
-<h3><a name="FOOT62" href="#DOCF62">(62)</a></h3>
-<p>Prior to <acronym>NCO</acronym> version 4.3.1 (May, 2013), <code>ncbo</code>
-would only broadcast variables in <var>file_2</var> to conform to
-<var>file_1</var>.
-Variables in <var>file_1</var> were <em>never</em> broadcast to conform to the
-dimensions in <var>file_2</var>.</p>
-<h3><a name="FOOT63" href="#DOCF63">(63)</a></h3>
-<p>This is because <code>ncra</code> collapses the record dimension
-to a size of 1<!-- /@w --> (making it a <em>degenerate</em> dimension), but does
-not remove it, while, unless ‘<samp>-b</samp>’ is given, <code>ncwa</code> removes
-all averaged dimensions.
-In other words, by default <code>ncra</code> changes variable size though
-not rank, while, <code>ncwa</code> changes both variable size and rank.</p>
-<h3><a name="FOOT64" href="#DOCF64">(64)</a></h3>
-<p>The old ncea command was deprecated in <acronym>NCO</acronym> version 4.3.9,
-released December, 2013.
-<acronym>NCO</acronym> will attempt to maintain back-compatibility and work
-as expected with invocations of <code>ncea</code> for as long as possible.
-Please replace <code>ncea</code> by <code>nces</code> in all future work.</p>
-<h3><a name="FOOT65" href="#DOCF65">(65)</a></h3>
-<p>As of <acronym>NCO</acronym> version 4.4.2 (released February, 2014)
-<code>nces</code> allows hyperslabs in all dimensions so long as the
-hyperslabs resolve to the same size.
-The fixed (i.e., non-record) dimensions should be the same size in
-all ensemble members both before and after hyperslabbing, although
-the hypserslabs may (and usually do) change the size of the dimensions
-from the input to the output files.
-Prior to this, <code>nces</code> was only guaranteed to work on hyperslabs
-in the record dimension that resolved to the same size.</p>
-<h3><a name="FOOT66" href="#DOCF66">(66)</a></h3>
-<p>Those familiar with netCDF mechanics might wish to know what is
-happening here: <code>ncks</code> does not attempt to redefine the variable
-in <var>output-file</var> to match its definition in <var>input-file</var>,
-<code>ncks</code> merely copies the values of the variable and its
-coordinate dimensions, if any, from <var>input-file</var> to
-<var>output-file</var>.
-</p>
-<h3><a name="FOOT67" href="#DOCF67">(67)</a></h3>
-<p>This limitation, imposed by the netCDF storage layer,
-may be relaxed in the future with netCDF4.</p>
-<h3><a name="FOOT68" href="#DOCF68">(68)</a></h3>
-<p>Prior to <acronym>NCO</acronym> 4.4.0 and netCDF 4.3.1 (January, 2014),
-<acronym>NCO</acronym> requires the ‘<samp>--hdf4</samp>’ switch to correctly read
-HDF4 input files.
-For example, ‘<samp>ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc</samp>’.
-That switch is now obsolete, though harmless for backwards compatibility.
-Prior to version 4.3.7 (October, 2013), <acronym>NCO</acronym> lacked the
-software necessary to workaround netCDF library flaws handling
-<acronym>HDF4</acronym> files, and thus <acronym>NCO</acronym> failed to convert
-<acronym>HDF4</acronym> files to netCDF files.
-In those cases, use the <code>ncl_convert2nc</code> command distributed
-with <acronym>NCL</acronym> to convert <acronym>HDF4</acronym> files to netCDF.</p>
-<h3><a name="FOOT69" href="#DOCF69">(69)</a></h3>
-<p><code>ncpdq</code> does not support packing data using the
-<acronym>HDF</acronym> convention.
-Although it is now straightforward to support this, we think it might
-sow more confusion than it reaps.
-Let us know if you disagree and would like <acronym>NCO</acronym> to support
-packing data with <acronym>HDF</acronym> algorithm.</p>
-<h3><a name="FOOT70" href="#DOCF70">(70)</a></h3>
-<p>The default behavior of (‘<samp>-I</samp>’) changed on
-19981201—before this date the default was not to weight or mask
-coordinate variables.</p>
-<h3><a name="FOOT71" href="#DOCF71">(71)</a></h3>
-<p>If <code>lat_wgt</code> contains Gaussian weights then the value of
-<code>latitude</code> in the <var>output-file</var> will be the area-weighted
-centroid of the hyperslab.
-For the example given, this is about 30 degrees.<!-- /@w --></p>
-<h3><a name="FOOT72" href="#DOCF72">(72)</a></h3>
-<p>The three switches ‘<samp>-m</samp>’, ‘<samp>-T</samp>’, and ‘<samp>-M</samp>’ are
-maintained for backward compatibility and may be deprecated in the
-future.
-It is safest to write scripts using ‘<samp>--mask_condition</samp>’.</p>
-<h3><a name="FOOT73" href="#DOCF73">(73)</a></h3>
-<p><code>gw</code> stands for <em>Gaussian weight</em> in many
-climate models.</p>
-<h3><a name="FOOT74" href="#DOCF74">(74)</a></h3>
-<p><code>ORO</code> stands for <em>Orography</em> in some climate models
-and in those models <em><var>ORO</var> < 0.5</em> selects ocean gridpoints.</p>
-<h3><a name="FOOT75" href="#DOCF75">(75)</a></h3>
-<p>Unfortunately the ‘<samp>-B</samp>’ and ‘<samp>--mask_condition</samp>’
-options are unsupported on Windows (with the <acronym>MVS</acronym> compiler),
-which lacks a free, standard parser and lexer.</p>
-<h3><a name="FOOT76" href="#DOCF76">(76)</a></h3>
-<a name="index-chocolate"></a>
-<p>Happy users have sent me a few gifts, though.
-This includes a box of imported chocolate.
-Mmm.
-Appreciation and gifts are definitely better than money.
-Naturally, I’m too lazy to split and send gifts to the other developers.
-However, unlike some <acronym>NCO</acronym> developers, I have a steady "real job".
-My intent is to split monetary donations among the active developers
-and to send them their shares via PayPal.</p>
-</div>
-<hr>
-
-
-
-</body>
-</html>
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-%%Creator: David M. Jones
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-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
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-%%Title: CMSY7
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMSY7.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-%%Creator: David M. Jones
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-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
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-%%EndFont
-%%BeginFont: CMSY9
-%!PS-AdobeFont-1.0: CMSY9 003.002
-%%Title: CMSY9
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMSY9.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
-FontDirectory/CMSY9 known{/CMSY9 findfont dup/UniqueID known{dup
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-/FontName /CMSY9 def
-/FontBBox {-29 -958 1146 777 }readonly def
-/PaintType 0 def
-/FontInfo 9 dict dup begin
-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMSY9.) readonly def
-/FullName (CMSY9) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
-/ItalicAngle -14.04 def
-/isFixedPitch false def
-/UnderlinePosition -100 def
-/UnderlineThickness 50 def
-end readonly def
-/Encoding 256 array
-0 1 255 {1 index exch /.notdef put} for
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-readonly def
-currentdict end
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-%%BeginFont: CMMI9
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-%%Title: CMMI9
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMMI9.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMMI9.) readonly def
-/FullName (CMMI9) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
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-/isFixedPitch false def
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-%%Title: CMMI7
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMMI7.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
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-%%EndFont
-%%BeginFont: CMSLTT10
-%!PS-AdobeFont-1.0: CMSLTT10 003.002
-%%Title: CMSLTT10
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMSLTT10.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-/FontName /CMSLTT10 def
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-/PaintType 0 def
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-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMSLTT10.) readonly def
-/FullName (CMSLTT10) readonly def
-/FamilyName (Computer Modern) readonly def
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-/isFixedPitch true def
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-%%Title: CMTI8
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMTI8.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-%%Title: CMTI9
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMTI9.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMTI9.) readonly def
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-/FamilyName (Computer Modern) readonly def
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-/isFixedPitch false def
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-%%Title: CMTI10
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMTI10.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-/FullName (CMTI10) readonly def
-/FamilyName (Computer Modern) readonly def
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-%%EndFont
-%%BeginFont: CMR8
-%!PS-AdobeFont-1.0: CMR8 003.002
-%%Title: CMR8
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMR8.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
-FontDirectory/CMR8 known{/CMR8 findfont dup/UniqueID known{dup
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-/FontName /CMR8 def
-/FontBBox {-36 -250 1070 750 }readonly def
-/PaintType 0 def
-/FontInfo 9 dict dup begin
-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMR8.) readonly def
-/FullName (CMR8) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
-/ItalicAngle 0 def
-/isFixedPitch false def
-/UnderlinePosition -100 def
-/UnderlineThickness 50 def
-end readonly def
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-dup 101 /e put
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-%%Title: CMTT9
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMTT9.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
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-%%BeginFont: CMR9
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-%%Title: CMR9
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMR9.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-%%EndFont
-%%BeginFont: CMR7
-%!PS-AdobeFont-1.0: CMR7 003.002
-%%Title: CMR7
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMR7.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
-FontDirectory/CMR7 known{/CMR7 findfont dup/UniqueID known{dup
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-{save true}{false}ifelse}{false}ifelse
-11 dict begin
-/FontType 1 def
-/FontMatrix [0.001 0 0 0.001 0 0 ]readonly def
-/FontName /CMR7 def
-/FontBBox {-27 -250 1122 750 }readonly def
-/PaintType 0 def
-/FontInfo 9 dict dup begin
-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMR7.) readonly def
-/FullName (CMR7) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
-/ItalicAngle 0 def
-/isFixedPitch false def
-/UnderlinePosition -100 def
-/UnderlineThickness 50 def
-end readonly def
-/Encoding 256 array
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-dup 50 /two put
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-dup 52 /four put
-dup 53 /five put
-dup 54 /six put
-dup 55 /seven put
-dup 56 /eight put
-dup 57 /nine put
-dup 61 /equal put
-dup 97 /a put
-dup 98 /b put
-dup 105 /i put
-dup 109 /m put
-dup 110 /n put
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-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMMI10.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
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-/FontName /CMMI10 def
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-/PaintType 0 def
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-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMMI10.) readonly def
-/FullName (CMMI10) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
-/ItalicAngle -14.04 def
-/isFixedPitch false def
-/UnderlinePosition -100 def
-/UnderlineThickness 50 def
-/ascent 750 def
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
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-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
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-%%EndFont
-%%BeginFont: CMSY10
-%!PS-AdobeFont-1.0: CMSY10 003.002
-%%Title: CMSY10
-%Version: 003.002
-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMSY10.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
-%%EndComments
-FontDirectory/CMSY10 known{/CMSY10 findfont dup/UniqueID known{dup
-/UniqueID get 5096651 eq exch/FontType get 1 eq and}{pop false}ifelse
-{save true}{false}ifelse}{false}ifelse
-11 dict begin
-/FontType 1 def
-/FontMatrix [0.001 0 0 0.001 0 0 ]readonly def
-/FontName /CMSY10 def
-/FontBBox {-29 -960 1116 775 }readonly def
-/PaintType 0 def
-/FontInfo 9 dict dup begin
-/version (003.002) readonly def
-/Notice (Copyright \050c\051 1997, 2009 American Mathematical Society \050<http://www.ams.org>\051, with Reserved Font Name CMSY10.) readonly def
-/FullName (CMSY10) readonly def
-/FamilyName (Computer Modern) readonly def
-/Weight (Medium) readonly def
-/ItalicAngle -14.04 def
-/isFixedPitch false def
-/UnderlinePosition -100 def
-/UnderlineThickness 50 def
-end readonly def
-/Encoding 256 array
-0 1 255 {1 index exch /.notdef put} for
-dup 0 /minus put
-dup 2 /multiply put
-dup 3 /asteriskmath put
-dup 13 /circlecopyrt put
-dup 15 /bullet put
-dup 17 /equivalence put
-dup 20 /lessequal put
-dup 21 /greaterequal put
-dup 25 /approxequal put
-dup 33 /arrowright put
-dup 50 /element put
-dup 54 /negationslash put
-dup 55 /mapsto put
-dup 77 /M put
-dup 92 /intersection put
-dup 106 /bar put
-dup 112 /radical put
-readonly def
-currentdict end
-currentfile eexec
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-%%CreationDate: Mon Jul 13 16:17:00 2009
-%%Creator: David M. Jones
-%Copyright: Copyright (c) 1997, 2009 American Mathematical Society
-%Copyright: (<http://www.ams.org>), with Reserved Font Name CMR10.
-% This Font Software is licensed under the SIL Open Font License, Version 1.1.
-% This license is in the accompanying file OFL.txt, and is also
-% available with a FAQ at: http://scripts.sil.org/OFL.
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-2819 y(gsl)p 262 2819 V 41 w(sf)p 367 2819 V 39 w(b)s(essel)p
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-2486 2819 V 40 w(yl)p 2599 2819 V 40 w(arra)m(y\(in)m(t,double,&v)-5
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-3696 V 40 w(b)s(essel)p 2177 3696 V 40 w(k2)p 2310 3696
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-823 4025 V 39 w(e)614 b(Y)112 b(gsl)p 1802 4025 V 40
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-2511 4463 V 39 w(expr,dbl)p 2877 4463 V 39 w(expr\))150
-4573 y(gsl)p 262 4573 V 41 w(sf)p 367 4573 V 39 w(b)s(essel)p
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-262 5230 V 41 w(sf)p 367 5230 V 39 w(clausen)p 694 5230
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-5340 y(gsl)p 262 5340 V 41 w(sf)p 367 5340 V 39 w(h)m(ydrogenicR)p
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-2727 737 V 40 w(arra)m(y)150 847 y(gsl)p 262 847 V 41
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-2600 V 41 w(dilog)p 2503 2600 V 41 w(xy)p 2640 2600 V
-40 w(e)150 2710 y(gsl)p 262 2710 V 41 w(sf)p 367 2710
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-262 2819 V 41 w(sf)p 367 2819 V 39 w(complex)p 731 2819
-V 41 w(sp)s(ence)p 1033 2819 V 40 w(xy)p 1169 2819 V
-40 w(e)267 b(N)112 b(gsl)p 1802 2819 V 40 w(sf)p 1906
-2819 V 40 w(complex)p 2271 2819 V 41 w(sp)s(ence)p 2573
-2819 V 39 w(xy)p 2708 2819 V 40 w(e)150 2929 y(gsl)p
-262 2929 V 41 w(sf)p 367 2929 V 39 w(m)m(ultiply)p 739
-2929 V 41 w(e)696 b(N)112 b(gsl)p 1802 2929 V 40 w(sf)p
-1906 2929 V 40 w(m)m(ultiply)150 3039 y(gsl)p 262 3039
-V 41 w(sf)p 367 3039 V 39 w(m)m(ultiply)p 739 3039 V
-41 w(err)p 892 3039 V 39 w(e)545 b(N)112 b(gsl)p 1802
-3039 V 40 w(sf)p 1906 3039 V 40 w(m)m(ultiply)p 2279
-3039 V 40 w(err)150 3148 y(gsl)p 262 3148 V 41 w(sf)p
-367 3148 V 39 w(ellin)m(t)p 604 3148 V 42 w(Kcomp)p 929
-3148 V 40 w(e)507 b(Y)112 b(gsl)p 1802 3148 V 40 w(sf)p
-1906 3148 V 40 w(ellin)m(t)p 2144 3148 V 41 w(Kcomp\(dbl)p
-2630 3148 V 40 w(expr\))150 3258 y(gsl)p 262 3258 V 41
-w(sf)p 367 3258 V 39 w(ellin)m(t)p 604 3258 V 42 w(Ecomp)p
-920 3258 V 40 w(e)516 b(Y)112 b(gsl)p 1802 3258 V 40
-w(sf)p 1906 3258 V 40 w(ellin)m(t)p 2144 3258 V 41 w(Ecomp\(dbl)p
-2621 3258 V 40 w(expr\))150 3367 y(gsl)p 262 3367 V 41
-w(sf)p 367 3367 V 39 w(ellin)m(t)p 604 3367 V 42 w(Pcomp)p
-920 3367 V 40 w(e)516 b(Y)112 b(gsl)p 1802 3367 V 40
-w(sf)p 1906 3367 V 40 w(ellin)m(t)p 2144 3367 V 41 w(Pcomp\(dbl)p
-2621 3367 V 40 w(expr,dbl)p 2988 3367 V 39 w(expr\))150
-3477 y(gsl)p 262 3477 V 41 w(sf)p 367 3477 V 39 w(ellin)m(t)p
-604 3477 V 42 w(Dcomp)p 927 3477 V 40 w(e)509 b(Y)112
-b(gsl)p 1802 3477 V 40 w(sf)p 1906 3477 V 40 w(ellin)m(t)p
-2144 3477 V 41 w(Dcomp\(dbl)p 2628 3477 V 41 w(expr\))150
-3587 y(gsl)p 262 3587 V 41 w(sf)p 367 3587 V 39 w(ellin)m(t)p
-604 3587 V 42 w(F)p 705 3587 V 40 w(e)731 b(Y)112 b(gsl)p
-1802 3587 V 40 w(sf)p 1906 3587 V 40 w(ellin)m(t)p 2144
-3587 V 41 w(F\(dbl)p 2406 3587 V 40 w(expr,dbl)p 2773
-3587 V 39 w(expr\))150 3696 y(gsl)p 262 3696 V 41 w(sf)p
-367 3696 V 39 w(ellin)m(t)p 604 3696 V 42 w(E)p 708 3696
-V 40 w(e)728 b(Y)112 b(gsl)p 1802 3696 V 40 w(sf)p 1906
-3696 V 40 w(ellin)m(t)p 2144 3696 V 41 w(E\(dbl)p 2409
-3696 V 40 w(expr,dbl)p 2776 3696 V 39 w(expr\))150 3806
-y(gsl)p 262 3806 V 41 w(sf)p 367 3806 V 39 w(ellin)m(t)p
-604 3806 V 42 w(P)p 708 3806 V 40 w(e)728 b(Y)112 b(gsl)p
-1802 3806 V 40 w(sf)p 1906 3806 V 40 w(ellin)m(t)p 2144
-3806 V 41 w(P\(dbl)p 2409 3806 V 40 w(expr,dbl)p 2776
-3806 V 39 w(expr,dbl)p 3142 3806 V 39 w(expr\))150 3915
-y(gsl)p 262 3915 V 41 w(sf)p 367 3915 V 39 w(ellin)m(t)p
-604 3915 V 42 w(D)p 715 3915 V 40 w(e)721 b(Y)112 b(gsl)p
-1802 3915 V 40 w(sf)p 1906 3915 V 40 w(ellin)m(t)p 2144
-3915 V 41 w(D\(dbl)p 2416 3915 V 40 w(expr,dbl)p 2783
-3915 V 39 w(expr,dbl)p 3149 3915 V 39 w(expr\))150 4025
-y(gsl)p 262 4025 V 41 w(sf)p 367 4025 V 39 w(ellin)m(t)p
-604 4025 V 42 w(R)m(C)p 776 4025 V 40 w(e)660 b(Y)112
-b(gsl)p 1802 4025 V 40 w(sf)p 1906 4025 V 40 w(ellin)m(t)p
-2144 4025 V 41 w(R)m(C\(dbl)p 2477 4025 V 40 w(expr,dbl)p
-2844 4025 V 39 w(expr\))150 4134 y(gsl)p 262 4134 V 41
-w(sf)p 367 4134 V 39 w(ellin)m(t)p 604 4134 V 42 w(RD)p
-782 4134 V 40 w(e)654 b(Y)112 b(gsl)p 1802 4134 V 40
-w(sf)p 1906 4134 V 40 w(ellin)m(t)p 2144 4134 V 41 w(RD\(dbl)p
-2483 4134 V 40 w(expr,dbl)p 2850 4134 V 39 w(expr,dbl)p
-3216 4134 V 39 w(expr\))150 4244 y(gsl)p 262 4244 V 41
-w(sf)p 367 4244 V 39 w(ellin)m(t)p 604 4244 V 42 w(RF)p
-772 4244 V 40 w(e)664 b(Y)112 b(gsl)p 1802 4244 V 40
-w(sf)p 1906 4244 V 40 w(ellin)m(t)p 2144 4244 V 41 w(RF\(dbl)p
-2473 4244 V 40 w(expr,dbl)p 2840 4244 V 39 w(expr,dbl)p
-3206 4244 V 39 w(expr\))150 4354 y(gsl)p 262 4354 V 41
-w(sf)p 367 4354 V 39 w(ellin)m(t)p 604 4354 V 42 w(RJ)p
-760 4354 V 39 w(e)677 b(Y)112 b(gsl)p 1802 4354 V 40
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-2461 4354 V 40 w(expr,dbl)p 2828 4354 V 39 w(expr,dbl)p
-3194 4354 V 39 w(expr,dbl)p 3560 4354 V 39 w(expr\))150
-4463 y(gsl)p 262 4463 V 41 w(sf)p 367 4463 V 39 w(elljac)p
-609 4463 V 42 w(e)825 b(N)112 b(gsl)p 1802 4463 V 40
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-V 41 w(sf)p 367 4573 V 39 w(erfc)p 550 4573 V 40 w(e)886
-b(Y)112 b(gsl)p 1802 4573 V 40 w(sf)p 1906 4573 V 40
-w(erfc\(dbl)p 2252 4573 V 40 w(expr\))150 4682 y(gsl)p
-262 4682 V 41 w(sf)p 367 4682 V 39 w(log)p 521 4682 V
-41 w(erfc)p 706 4682 V 41 w(e)729 b(Y)112 b(gsl)p 1802
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-w(erfc\(dbl)p 2408 4682 V 40 w(expr\))150 4792 y(gsl)p
-262 4792 V 41 w(sf)p 367 4792 V 39 w(erf)p 510 4792 V
-40 w(e)926 b(Y)112 b(gsl)p 1802 4792 V 40 w(sf)p 1906
-4792 V 40 w(erf\(dbl)p 2212 4792 V 39 w(expr\))150 4902
-y(gsl)p 262 4902 V 41 w(sf)p 367 4902 V 39 w(erf)p 510
-4902 V 40 w(Z)p 606 4902 V 40 w(e)830 b(Y)112 b(gsl)p
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-262 5011 V 41 w(sf)p 367 5011 V 39 w(erf)p 510 5011 V
-40 w(Q)p 621 5011 V 40 w(e)815 b(Y)112 b(gsl)p 1802 5011
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-2323 5011 V 39 w(expr\))150 5121 y(gsl)p 262 5121 V 41
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-w(hazard\(dbl)p 2376 5121 V 39 w(expr\))150 5230 y(gsl)p
-262 5230 V 41 w(sf)p 367 5230 V 39 w(exp)p 545 5230 V
-40 w(e)891 b(Y)112 b(gsl)p 1802 5230 V 40 w(sf)p 1906
-5230 V 40 w(exp\(dbl)p 2247 5230 V 39 w(expr\))150 5340
-y(gsl)p 262 5340 V 41 w(sf)p 367 5340 V 39 w(exp)p 545
-5340 V 40 w(e10)p 715 5340 V 41 w(e)720 b(N)112 b(gsl)p
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-V 41 w(e)357 b(Y)112 b(gsl)p 1802 1833 V 40 w(sf)p 1906
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-V 41 w(scaled\(dbl)p 2780 1833 V 40 w(expr\))150 1943
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-1943 V 39 w(expr\))150 2052 y(gsl)p 262 2052 V 41 w(sf)p
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-2052 V 40 w(e)655 b(Y)112 b(gsl)p 1802 2052 V 40 w(sf)p
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-2482 2052 V 40 w(expr\))150 2162 y(gsl)p 262 2162 V 41
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-3367 V 40 w(sf)p 1906 3367 V 40 w(fermi)p 2151 3367 V
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-w(sf)p 1906 4244 V 40 w(gammastar\(dbl)p 2547 4244 V
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-2516 4354 V 41 w(expr\))150 4463 y(gsl)p 262 4463 V 41
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-2642 4134 V 39 w(arra)m(y)150 4244 y(gsl)p 262 4244 V
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-2583 4354 V 40 w(expr\))150 4463 y(gsl)p 262 4463 V 41
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-b(status=gsl)p 2111 5011 V 40 w(sf)p 2215 5011 V 40 w(legendre)p
-2583 5011 V 40 w(Plm)p 2786 5011 V 40 w(arra)m(y\(in)m(t,in)m
-(t,double,&v)-5 b(ar)p 3817 5011 V 43 w(out\))150 5121
-y(gsl)p 262 5121 V 41 w(sf)p 367 5121 V 39 w(legendre)p
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-V 39 w(arra)m(y)92 b(N)112 b(gsl)p 1802 5121 V 40 w(sf)p
-1906 5121 V 40 w(legendre)p 2274 5121 V 40 w(Plm)p 2477
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-y(gsl)p 262 5230 V 41 w(sf)p 367 5230 V 39 w(legendre)p
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-2052 V 39 w(expr\))150 2162 y(gsl)p 262 2162 V 41 w(sf)p
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-4463 V 40 w(e)833 b(Y)112 b(gsl)p 1802 4463 V 40 w(sf)p
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-4463 V 41 w(expr\))150 4573 y(gsl)p 262 4573 V 41 w(sf)p
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-1285 V 41 w(sf)p 367 1285 V 39 w(rect)p 557 1285 V 41
-w(to)p 678 1285 V 41 w(p)s(olar)592 b(N)112 b(gsl)p 1802
-1285 V 40 w(sf)p 1906 1285 V 40 w(rect)p 2097 1285 V
-41 w(to)p 2218 1285 V 40 w(p)s(olar)150 1395 y(gsl)p
-262 1395 V 41 w(sf)p 367 1395 V 39 w(sin)p 518 1395 V
-40 w(err)p 670 1395 V 39 w(e)767 b(N)112 b(gsl)p 1802
-1395 V 40 w(sf)p 1906 1395 V 40 w(sin)p 2058 1395 V 39
-w(err)150 1504 y(gsl)p 262 1504 V 41 w(sf)p 367 1504
-V 39 w(cos)p 527 1504 V 41 w(err)p 680 1504 V 40 w(e)756
-b(N)112 b(gsl)p 1802 1504 V 40 w(sf)p 1906 1504 V 40
-w(cos)p 2067 1504 V 41 w(err)150 1614 y(gsl)p 262 1614
-V 41 w(sf)p 367 1614 V 39 w(angle)p 612 1614 V 41 w(restrict)p
-936 1614 V 41 w(symm)p 1213 1614 V 39 w(e)224 b(N)112
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-1724 y(gsl)p 262 1724 V 41 w(sf)p 367 1724 V 39 w(angle)p
-612 1724 V 41 w(restrict)p 936 1724 V 41 w(p)s(os)p 1112
-1724 V 39 w(e)325 b(N)112 b(gsl)p 1802 1724 V 40 w(sf)p
-1906 1724 V 40 w(angle)p 2152 1724 V 41 w(restrict)p
-2476 1724 V 41 w(p)s(os)150 1833 y(gsl)p 262 1833 V 41
-w(sf)p 367 1833 V 39 w(angle)p 612 1833 V 41 w(restrict)p
-936 1833 V 41 w(symm)p 1213 1833 V 39 w(err)p 1364 1833
-V 40 w(e)72 b(N)112 b(gsl)p 1802 1833 V 40 w(sf)p 1906
-1833 V 40 w(angle)p 2152 1833 V 41 w(restrict)p 2476
-1833 V 41 w(symm)p 2753 1833 V 39 w(err)150 1943 y(gsl)p
-262 1943 V 41 w(sf)p 367 1943 V 39 w(angle)p 612 1943
-V 41 w(restrict)p 936 1943 V 41 w(p)s(os)p 1112 1943
-V 39 w(err)p 1263 1943 V 40 w(e)173 b(N)112 b(gsl)p 1802
-1943 V 40 w(sf)p 1906 1943 V 40 w(angle)p 2152 1943 V
-41 w(restrict)p 2476 1943 V 41 w(p)s(os)p 2652 1943 V
-39 w(err)150 2052 y(gsl)p 262 2052 V 41 w(sf)p 367 2052
-V 39 w(zeta)p 566 2052 V 42 w(in)m(t)p 716 2052 V 40
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--13.24 -11.33 f*
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--12.26 -11.96 f*
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--1.37 0.09 f*
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--7.55 1.3 f*
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--0.39 2.58 3.63 11.55 2.3 12.52 -9 22.48 -1 2.15 -8.93 6.38 -7.44 5.54 -15.17 0
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-4.62 33.12 7.68 5.82 2.26 34.36 7.16 7.72 -0.42 35.39 6.34 9.9 5.84 10.55 5.32 11.28
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--4.12 -14.29 -4.89 -13.37 6.25 -30.82 4.32 -31.96 -6.8 -10.22 -7.29 -9.66 -7.74 -9.16 -2.85 28.52
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--0.26 15.69 -15.87 -0.35 p f*
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--11.79 -0.65 f*
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--8.46 -1.5 -8.99 0.45 -8.29 -2.25 -8.77 -0.09 -9.31 4.58 -0.19 0.18 -9.27 11.13 f*
-0 155 255 rG
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-8.46 1.5 10.05 -2.67 3.08 -2.3 11.51 -10.61 5.08 -1.24 5.92 -1.13 9.07 2.39 9.16 2.2
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--10.02 3.02 -9.27 1.37 -0.18 0 -0.8 0.25 -8.71 2.84 -9.52 7.1 -0.29 3.34 f*
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--4.1 1.39 f*
-255 135 0 rG
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--3.06 -0.5 -1.32 1.07 f*
-255 203 0 rG
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-9.07 -8.87 8.77 -3.04 7.2 2.21 4.89 7.51 6.57 2.67 7.18 1.33 6.66 2.34 6.34 2.8
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--9.05 6.27 f*
-110 210 9 rG
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-5.14 1.63 7.9 -13.35 5.71 1.97 5.6 2.15 5.47 2.32 5.29 2.47 5.14 2.63 4.97 2.8
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--5.08 0.8 -11.52 3.71 -1.71 3.93 -2.28 3.9 -5.51 3.43 -6.32 3.02 1.71 4.49 3.73 5.34
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--0.89 5.68 -2.88 6.77 -5.97 6.18 -8.11 5.52 -9.01 5.08 -9.44 4.73 -9.59 4.54 -1.46 4.58
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-0 255 r6
-976.65 3337.67 -3.95 1.91 6.23 4.93 4.23 -2.28 3.38 -2.82 9.27 0.34 3.49 0.2 12 1.93
--9.2 -3.91 -14.67 -6.82 -3.41 2.3 -3.62 2.17 -3.76 2.04 f*
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--0.46 -1.5 -11.02 1.54 1.26 1.89 2.08 1.91 -11.24 2.08 f*
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-1.86 0.95 -1.95 0.35 f*
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--1.84 -2.71 -2.47 -0.44 -10.94 5.32 f*
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--7.34 5.08 f*
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--19.57 -3.21 -19.55 -3.21 f*
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--1.15 -2.67 -13.56 2.26 -0.33 0.04 0.46 1.5 0.26 0.8 1.13 2.28 -0.11 2.43 -1.86 2.36
--0.02 0.11 0 0.07 1.88 2.36 -2.78 1.13 f*
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--4.69 -1.54 -0.56 0.43 3.25 2.56 f*
-255 135 0 rG
-1010.27 3257.09 -6.36 3.15 1.63 2.23 4.73 -5.38 f*
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-1005.54 3262.48 0.21 0.35 11.61 -5.36 3.5 -4.78 1.65 -2.02 -2.28 1.24 -9.96 5.18 -4.73 5.38 f*
-0 255 r6
-1019.18 3227.15 -12.8 10.46 4.69 1.54 5.86 0.87 2.56 3.21 10.3 -6.79 -3.86 -2.82 -2.02 -2.82
--0.2 -1.3 -1.39 -5.06 -4.66 1.63 1.52 1.09 f*
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--0.45 -2.95 18.67 -4.62 -0.91 -3.52 -1.15 -3.43 -1.39 -3.38 -1.62 -3.32 -1.87 -3.23 -2.06 -3.14
--5.17 2.49 3.5 -4.78 1.65 -2.02 13.72 -7.71 3.88 -2.28 2.3 3.93 2.86 3.58 1.96 4.01
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--0.86 6.23 -3.36 6.77 -4.84 6.39 -0.58 0.56 -7.49 6.88 -8.09 6.36 -5.45 4.02 -14.62 2.49
--5.08 0.8 -11.52 3.71 -1.71 3.93 -2.28 3.9 -5.51 3.43 -6.32 3.02 1.71 4.49 3.73 5.34
--13.2 -3.45 3.14 -3.32 2.87 -3.38 2.6 -3.47 2.35 -3.52 2.06 -3.58 -18.23 -1.72 -0.24 -0.11
-1.5 -2.89 1.32 -3 1.09 -3.02 -7.53 -0.11 f*
-255 203 0 rG
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-7 193 59 rG
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-1086.74 2306.34 -22.85 -2.3 21.05 6.12 21.05 6.1 28.21 5.88 -23.71 -7.9 -23.75 -7.89 f*
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--14.61 17.14 f*
-0 155 255 rG
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-6.05 8.18 5.54 8.53 4.66 9.16 7.89 6.16 0.93 0.24 8.3 4.79 5.81 8.05 4.54 0.91
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--12.78 -1.21 -2.67 0.13 -13.37 3.37 -8.03 2.84 -7.9 17.36 f*
-7 193 59 rG
-1208.09 3105.21 -3.86 15.38 7.68 6.9 11.98 1.91 10.3 3.95 4.38 4.25 2.87 3.06 6.34 8.14
-6.36 7.95 6.79 7.45 9.46 4.91 2.76 1.58 0 -12.59 -4.32 -1.58 -2.17 -1.34 -6.75 -4.21
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-11.63 2.97 8.09 7.55 3.04 13.59 0.13 14.8 -2.28 3.8 -9.16 15.64 0 12.59 6.4 3.64
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--9.98 2.2 f*
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-110 210 9 rG
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-Q q
-0 72 3400 0 0 4128 ^ Y
-255 G
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-5.06 10.14 4.86 10.22 4.69 10.31 4.51 10.39 4.34 10.46 4.14 10.52 3.95 10.62 3.78 10.67
-3.61 10.75 P
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-1.87 11.17 1.67 11.2 1.47 11.24 1.28 11.25 1.09 11.28 0.89 11.29 0.7 11.3 0.5 11.31
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-0.91 2.23 p
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--1.91 1.13 -1.93 1.13 -1.97 1.13 -1.99 1.15 -2.05 1.17 -2.06 1.15 -2.09 1.17 -2.13 1.2
--2.14 1.17 -2.19 1.2 -2.23 1.19 -2.25 1.22 -2.3 1.21 1.64 -0.84 1.63 -0.87 1.68 -0.89
-1.67 -0.91 1.69 -0.92 1.71 -0.93 1.72 -0.95 1.73 -0.95 1.76 -0.98 1.78 -1 1.78 -1.02
-1.83 -1.02 1.82 -1.04 1.84 -1.09 1.87 -1.09 1.5 -0.87 -4.88 2.88 -4.93 2.78 -4.9 2.78
--4.97 2.71 -4.97 2.7 -5.04 2.63 -5.01 2.6 -5.06 2.54 -5.05 2.52 -5.1 2.46 -5.1 2.43
--3.8 1.72 0 -130.04 4.3 -0.98 3.64 -1.82 2.8 -0.5 1.82 -1.91 2.37 -1.04 3.02 -0.33
-4.25 -1.2 2.78 -1.58 4.32 -1.34 2.12 0.11 3.15 -2.06 2.64 -1.06 4.16 -3.39 -4.32 1.52
-2.76 -1.72 2.06 -2.49 5.64 -2.64 -2.82 0.24 5.79 -4.06 3.17 -4.21 -1.06 -1.54 3.19 -2.04
-1.46 0.43 4.95 -4.02 4.95 -3.52 0.57 -1.5 -1.84 -0.13 0 -2.34 2.06 -0.48 2.84 -2.48
-3.11 -2.26 -0.71 -0.98 2.73 -3.1 2.24 -1.65 2.78 -1.87 0.26 -2.06 -2.98 0.7 -2.95 2.93
--2.75 1.82 -0.93 2.3 -3.06 2.24 -2.12 2.78 -0.5 2.11 0 2.34 -0.22 -0.02 -2.84 1.11
--4.04 2.78 1.96 -2.93 0.82 -1.91 3.61 -3.61 1.85 -2.34 2.95 -3.43 2.28 -3.21 3.21 -2.66
-0.85 -2.3 2.11 -3.2 1.3 0 -1.34 2.56 2.64 -0.87 2.22 -0.09 3.53 -2.66 4.13 -3.02
-3.69 -2.23 3.84 -4.34 0.29 -2.47 -2.89 1.56 -2.82 1.48 -2.54 2.61 -2.89 1.45 -1.65 -0.15
-2.47 -1.54 1.02 -2.17 -2.82 0.46 -2.93 3.38 -3.32 3.21 -1.93 2.84 -2.82 1.29 -2.52 3.04
--2.87 2.8 -3.71 3.45 -4.12 3.23 -1.5 2.47 -2.88 3.93 -2.8 3.54 -2.47 3.06 0.28 1.47
--2.32 2.04 -2.82 0.93 -3.52 2.34 -4.04 2.52 -3.19 1.21 -3.23 2.47 3.5 -1.61 2.28 -0.67
--3.88 3.3 -3.41 3.12 -3.3 2.37 -3.78 1.87 -3.71 2.71 -4.05 1.52 -4.17 2.06 -3.5 1.3
--3.34 0.59 -2.73 0.45 -2.23 0.34 -4.64 1.89 0.24 1.21 -1.72 1.73 -1.62 0.22 1.37 -1.39
--2.5 0.61 -1.34 2.34 2.54 -0.65 2.37 0.04 1.25 1.05 2.54 0.28 0 130.04 -1.37 0.63
--5.14 2.34 -10.37 4.52 -5.21 2.16 -5.23 2.18 -5.25 2.08 -5.27 2.06 -5.29 1.99 -5.3 1.98
--5.34 1.89 -5.32 1.88 -5.36 1.8 -5.38 1.8 -5.38 1.7 -5.39 1.71 -10.85 3.21 -5.45 1.52
--5.45 1.49 -5.49 1.43 -5.47 1.41 -5.49 1.32 -5.51 1.33 -5.51 1.21 -5.51 1.24 -5.55 1.13
--5.54 1.13 -5.55 1.05 -5.58 1.02 -11.16 1.87 -5.57 0.85 -5.6 0.82 -5.6 0.74 -5.62 0.74
--5.6 0.65 -5.62 0.65 -5.64 0.52 -5.62 0.54 -5.64 0.45 -5.64 0.44 -11.29 0.7 -5.64 0.25
--5.64 0.24 -5.66 0.16 -2.04 0.04 0 -0.11 2.54 -0.07 2.52 -0.08 1.04 -0.02 1.21 -0.05
-0.26 -0.02 2.5 -0.09 2.13 -0.08 6.09 -0.29 6.08 -0.34 6.08 -0.39 6.08 -0.46 6.04 -0.5
-6.03 -0.58 6.03 -0.61 6 -0.68 5.99 -0.73 5.95 -0.79 5.95 -0.84 5.9 -0.89 5.9 -0.95
-5.86 -1 p
-5.84 -1.05 5.79 -1.08 6.18 -1.24 6.21 -1.28 6.21 -1.34 6.23 -1.43 6.23 -1.5 6.25 -1.56
-6.25 -1.63 6.25 -1.69 6.25 -1.76 6.25 -1.82 6.27 -1.91 6.25 -1.97 6.25 -2.04 6.23 -2.11
-6.23 -2.18 6.23 -2.23 6.21 -2.3 6.18 -2.39 0.33 -0.12 0.3 -0.11 0.61 -0.26 0.3 -0.11
-0.28 -0.13 0.31 -0.11 0.28 -0.13 0.84 -0.32 0.26 -0.13 0.29 -0.11 0.52 -0.22 0.28 -0.11
-0.24 -0.11 -5.75 2.25 -5.62 2.15 0 -129.8 3.91 -1.89 4.23 -2.23 2.15 -2.23 4.34 -2.02
-3.67 -1.45 2.45 -0.46 1.7 -2.91 0.76 -2.52 2.61 -2.06 2.8 -1.78 -0.09 -0.89 1.36 -1.39
-1.96 -0.5 -0.59 1.58 -0.06 1.52 3.43 -2.54 3.67 -2.3 -3.8 0.5 -0.65 -0.82 -2.5 0.61
--4.53 2.61 -1.81 -0.16 -1.15 1.63 -2.04 1.98 -1.93 0.43 -1.8 -0.15 -2.93 1.37 -2.47 0.45
--3 0.41 -2.15 -0.82 -3.28 1.58 0.41 1.47 1.21 1.2 0.18 1.22 -0.43 2.13 -1.56 2.19
--1.74 1.86 -5.04 2.43 4.56 -1.17 -0.09 0.93 1.52 0 -3.28 2.19 0 129.8 -0.41 0.17
--6.07 2.23 -6.1 2.22 -6.14 2.12 -6.16 2.06 -1.89 0.63 0 -129.47 5.67 -1.96 5.16 -2.14
-4.76 -1.91 -5.82 1.52 -4.34 1.55 -1.55 1.45 -3.88 1.5 0 129.47 -0.56 0.17 0 -146.57
-0.86 -1.95 1.95 -1.59 2.8 -0.93 2.35 -0.15 3.52 -0.65 3.36 -0.13 1.35 0.65 0.2 1.17
-1.69 0.35 -0.35 1.19 3.06 0.11 -0.31 -1.52 1.17 -1.48 2.87 -1.15 4.13 -0.89 -3.13 -0.87
--3.58 0.84 -3.58 -0.06 -3.26 0.49 -2.41 -0.7 -0.87 -0.62 -2.67 0.45 -2.86 0.11 -3.02 -0.22
--2.71 -0.5 -3.3 -0.02 -2.21 -0.48 -0.8 -1.2 -2.97 -0.32 -3.53 0.11 -3.15 -0.67 -3.19 1.17
--2.32 0.46 -1.58 -1.06 -1.89 1.04 1.04 1 2.61 0.7 2.28 0.93 2.91 0.43 3.23 0.15
-2.02 1.13 4.55 1.74 1.98 1.08 1.95 1.09 1.83 0.76 0 146.57 -3.71 1.21 -6.23 1.95
--2.02 0.64 0 -128.65 6.14 -1.69 2.11 -1 -4.8 1.26 -3.45 1.43 0 128.65 -4.21 1.28
--6.25 1.82 -6.25 1.76 -6.29 1.71 -6.3 1.63 -6.32 1.58 -6.32 1.5 -4.95 1.13 0 -132.27
-4.25 -1.2 -1.23 -0.52 -3.2 0.91 -3.55 0.29 1.11 0.52 2.63 0 0 132.27 -1.37 0.33
--7.25 1.56 -7.25 1.47 -3.6 0.7 -3.62 0.7 -3.61 0.66 -3.6 0.67 -2.56 0.43 0 -136.98
-3.71 -1.37 4.23 -0.28 3.08 1.06 4.88 0.3 4.73 -0.3 4.75 -0.74 -0.57 -1.06 -1.82 -0.89
--1.75 -1.24 -0.87 -1.97 -2.13 -1.43 -1.74 -1.67 -1.04 -1.24 -1.39 -1.47 -1.43 -1.11 -2.82 -1.2
--3.14 -0.74 -3.13 -0.78 -3.49 0.74 -3.04 -0.52 -0.61 -1.13 -2.76 1.09 -4.04 0.5 -4.62 -0.02
--4.2 -0.2 -3.11 -0.67 -4.77 -0.12 -3.95 -0.43 -2.41 -0.66 -3.71 0.07 -3.71 0.39 -1.93 -0.84
--2.24 -1.71 -1.95 -1.5 -3.15 -0.21 0.79 -0.87 4.77 -0.55 2.41 1.05 1.17 1.32 2.78 -0.41
-3.21 0.39 3.58 0.26 4.3 0.02 -0.18 -1.35 -0.78 -1.11 -3.76 -1.18 3.59 -0.5 1.87 -1.3
-3.55 -0.93 4.19 -0.82 3.67 0.32 3.73 0.33 4.04 -0.24 3.54 0.3 3.29 0.73 -2.11 1.29
--0.26 1.2 4.8 -1.72 2.11 -1.37 2.25 -0.28 4.14 -1.26 2.43 -1.21 -0.26 -1.02 -3.25 0.5
-0.06 -1.17 p
-2.13 -0.71 1.91 -1.39 1.5 -1.61 2.08 -0.75 1.47 0.37 1.13 0.17 1.84 -1.43 2.91 -1.3
-2.14 -2.17 3.17 -0.72 0.24 -0.97 2.86 -1.87 3.11 -2.11 2.78 -1.63 0.67 -0.39 3.38 -1.11
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-2.56 0.17 2.6 0.13 -3.8 1.02 -2.25 1.63 2.6 0.2 3.06 -0.84 -3.84 2.57 -4.86 1.38
--2.08 1.87 -0.7 1.19 0 -5.62 4.05 -1.15 -0.56 -1.02 -2.82 0.5 -0.67 1.67 0 5.62
--0.43 0.76 1.23 0.41 -0.15 1.57 -0.45 1.8 3.36 -0.41 2.46 0.28 0.63 0.87 2.91 -0.52
-3.62 -0.78 3.43 -0.59 3.35 -0.07 2.79 0.41 3.56 0.15 3.23 -0.5 3.69 -0.48 1.15 -0.48
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-4.66 -3.12 1.47 -0.15 3.43 -1.07 2.12 -2.19 3.54 -2.97 2.89 -2.8 2.06 -2.24 1.71 -2.45
-1.32 0.13 2.63 -1.63 0.61 1.59 1.3 1.02 2.3 0.02 1.48 0.63 2.06 0.43 3.04 -0.63
-3.21 -1 3.43 -1.47 3.11 -1.7 3.41 -2.49 3.06 -3.64 2.28 -4 2.3 -3.38 3.49 -4.06
--2.89 0.52 -3.41 1.69 -3.69 3.43 -3.43 0.68 -3.37 0.3 -1.71 2.98 -2.5 0.48 -1.25 -1.3
-1.99 -3.71 -1.71 -1.37 -3.3 2.39 -3.16 2.02 -3.89 2.54 -0.43 -1.06 0.16 -1.54 -0.04 -2.12
-1.54 -2.78 1.95 -2.67 2 -3.04 2.78 -2.54 2.41 -2.99 1.08 -2.06 -3.49 3.54 -1.74 -0.43
--1.91 1.52 -2.3 2.59 -3.32 2.66 -2.26 -0.2 0.34 -2.58 2.87 -2.78 3.3 -3.02 1.75 -2.67
-2.26 -2.93 2.39 -1.83 1.93 -1.91 1.21 -2.8 -0.71 -1.21 2.48 -2.56 2.32 -1.58 1.84 0.28
-1.28 0.89 1.15 1.28 2.68 -1.13 1.21 0.91 -0.46 1.89 -1.91 2.02 -2.06 2.37 -1.74 2.82
-1.24 0.65 -0.02 1.58 -0.7 2.26 -0.11 1.95 3.71 -2.86 -0.67 -0.91 2.34 -3.15 1.98 -3.66
-2.91 -2.23 2.21 -3.22 2.78 -3.6 2.41 -2.43 2.97 -2.82 1.07 1.69 1.04 1.72 3.08 -1.22
-2.5 -0.87 2.56 -0.98 2.65 -1.34 0.67 0.93 1.76 0.61 2.47 -0.97 0.65 -2.87 2.09 1.04
-2.06 -1.02 1.02 -2.5 1.39 -2.37 1.84 -2.39 1.02 -2.88 0.74 0.89 -1.07 3.28 0.74 0.91
-0.09 1.71 1.69 -1.56 3.82 -3.11 0.26 -1.28 3.36 -3.28 1.52 -0.78 1.73 -2.07 0.28 -1.73
-2.34 -2.97 2.76 -3.37 2.8 -3.43 2.26 -3.43 -0.3 -1.26 2.54 -1.8 2.06 -2.19 2.67 -3.56
-2.11 -3.08 1.61 -3.14 2.56 -3.17 0.11 -2.56 1.96 -1.87 1.49 -3.19 1.96 -3.99 1.46 -3.61
-1.89 -4.54 1.32 -3.99 0.32 -3 0.29 -2.95 -0.22 -2.47 2.15 -4.17 -2.54 0.11 2.63 -3.86
--2.02 -0.02 2.63 -3.45 0.55 -3.45 0.04 -2.89 0.89 -3.93 -0.11 -3.23 0.39 -3.41 1.5 -2.87
-2.37 -1.52 0.58 -2.26 -0.37 -1.52 -2.28 1.91 -1.33 1.22 -2.02 3.01 -0.37 -1.52 -1.72 -0.34
--0.57 -2.26 p
-0.24 -3.32 0.69 -3.47 0.55 -3.8 1 -3.9 1.61 -3.8 0.78 -4.32 1.67 -3.45 1.98 -4.02
-3.17 -2.37 2.2 -0.47 1.61 -1.83 2.54 -1.04 2.36 -1.3 2.67 -0.68 2.11 -0.43 2.38 -1.41
-2.48 -1.11 2.78 -3.34 2.43 -2.8 2.24 -3.26 2.09 -3.64 1.71 -3.08 2.54 -5.23 1.65 -3.12
-0.98 -3.23 0.02 -4.1 0.11 -3.71 0.11 -3.67 0.02 -3.7 -1.24 -2.45 2.11 -4.47 0.67 -4.55
--0.84 -2.76 0.15 -4.21 0.09 -4.23 -1.76 2.45 -1.66 3.8 -1.29 4.47 -1.75 -0.76 -1.72 1.45
--1.39 -2.34 -2.17 0.85 -2.02 2.02 -1.86 2.39 -1.73 1.39 -1.39 -0.09 -2.49 1.37 -1 -1.63
--1.5 -1.36 -2.04 4.12 -1.84 -0.76 -0.43 -2.82 1.8 -4.43 2.28 -4.78 0.91 -3.6 1.2 -4.23
-0.41 -3.41 1.37 -4.82 1.78 -4.25 1.93 -3.1 1.15 2.45 2.23 -4.66 1.89 -1.24 1.91 -3.14
-2.09 -3.8 1.67 -0.67 1.87 1.45 2.06 -1.93 2.11 -1.06 2.06 -1.02 2.04 -1.06 2.29 -2.67
-1.3 -3.99 1.26 -4.02 1.23 -4.02 1.2 -4.06 1.76 -1.56 2.28 -3.56 1.78 -4.19 -2.2 -2.67
--1.52 0.89 -1.8 0.56 -2.04 0.29 -1.71 1.5 -2.23 0.91 -1.41 3.67 -2.22 1.89 -2.19 2.73
--0.96 4.23 -1.56 1.69 -1.76 4.25 -1.06 3.14 -1.08 2.17 -1.22 1.46 -1.84 1.32 -1.84 1.3
--0.26 0.26 0 -22.48 2.11 -1.09 1.76 -2.39 1.98 -2.12 2.06 -1.13 2.13 -0.25 2.28 -0.87
-2.11 -2.84 2.36 -2.56 1.37 2.36 2.61 -2.3 1.67 1.07 2.32 -2.63 1.43 0.7 0.76 -4.41
-1.28 1.46 2.06 -2 0.57 -3.8 0.02 -4.38 1.61 -1.67 1.8 2 1.67 -5.17 1.47 -1
-1.17 -3.02 1.52 1.7 1.58 -1.82 -0.45 3.95 -1.17 1.32 -1.65 -1.02 0.15 3.8 1.34 2.43
-1.65 -3.49 1.22 -3.09 1.13 0.43 0.59 -4.69 -2.8 0.35 1.28 -2.04 0.02 -5.25 0.96 -5.92
-0.65 -4.45 0.43 -5.45 0.33 -4.73 -1.63 0.93 -1.3 -1.26 -0.29 -2.73 -1.24 0.5 -1.91 3.11
--2.02 1.34 -2.78 2.28 -1.87 2.34 -1 2.28 -2.08 1.26 -2.19 3.64 -2.09 2.91 -0.91 3.11
--2.02 3.84 -0.93 3.11 -2.08 2.08 -1.13 2.13 -1.07 0.06 0 -10.8 2.56 -4.82 -1.02 -1.7
--1.21 1.26 -1.02 3.82 0.7 1.43 0 10.8 -1.26 0.09 -1.78 4.82 -1.76 3.17 -0.62 2.63
--2.3 1.04 -1.43 0.21 0 -8.16 2.58 -2.37 0.74 -3.34 -2.14 1.99 -1.7 1.56 0.52 2.15
-0 8.16 -0.7 0.11 -1.52 3.39 -2.21 1.8 -1.98 2.15 -1.28 -0.5 -2.7 2.19 -2.28 1.85
--1.73 2.34 -1.43 3.45 1.91 1.96 2.08 -1.2 1.89 1.97 2.25 1.63 0 22.48 -2.11 2.28
--2.37 1.65 -0.26 -2.17 -1.67 2.52 -1.41 3.69 -0.98 5.16 -1.78 4.32 -1.54 3.63 -0.34 3.32
--1.33 3.02 -2.3 2.66 -1.23 5.06 -2.39 3.45 -1.06 1.08 0 -541.79 -1.93 -2.63 -1.96 -2.62
--3.1 -3.69 -3.17 -3.69 -1 -1.52 -1.04 -1.55 -0.02 -0.58 -0.02 -0.61 -0.47 -1.73 -1.71 -1.91
--1.74 -1.93 -3.14 -2.82 -3.14 -2.8 -3.15 -2.76 -3.14 -2.71 -0.71 -0.48 -0.72 -0.45 -2.21 -1.71
--2.19 -1.67 -2.95 -2.37 -2.95 -2.32 2.47 2.41 2.43 2.41 -1.41 -0.87 -1.41 -0.85 -1.82 -1.17
--1.82 -1.15 1.67 1.91 1.63 1.89 2.5 2.52 2.45 2.54 2.45 2.32 2.43 2.32 2.82 2.62
-2.82 2.65 p
-2.11 1.97 2.13 1.98 2.9 2.93 2.89 2.93 3.71 3.67 3.69 3.73 2.93 2.86 2.93 2.93
-0 541.79 -1.8 1.82 -2.45 3.38 -2.17 2.87 -2.3 3.62 -2.02 3.11 -2.25 2.75 -2.37 1.56
--1.46 -0.08 0.83 -2.91 -0.39 -3.54 -0.19 -3.23 0.28 -3.43 -1.13 -1.52 -1.17 -0.65 -2.23 -0.11
--1.29 3.93 -1.67 4.49 -2.32 3.56 -2.56 3.17 -2.28 2.66 -0.89 -1.21 -2.21 1.8 -0.5 2.23
--2.25 1.78 -0.85 -1.17 -1.91 1.2 -2.69 1.17 -2.43 1.43 -2.07 2.02 -1.82 2.34 -2.06 1.96
--0.63 0.34 0 -118.21 2.95 -0.65 2.34 -2.46 2.3 -2.49 1.96 -2.73 2.11 -1.98 1.11 -3.97
-0.3 -3.87 -1.04 -3.38 -2.02 -2.67 -1.67 -1.08 -1.71 2.21 -1.87 4.05 -1.11 2.65 -1.08 3.93
--0.5 3.06 -0.65 3.61 0.11 3.49 -1.52 2.28 0 118.21 -1.87 1.09 0 -3.78 0.09 -2.73
-0.41 -3.23 -1.04 -2.21 -1.09 -2.19 -1.04 -2.24 -0.89 -1.91 -2.6 3.08 0.74 -2.61 -0.59 -2.45
--0.87 -2.63 0.74 -2.64 1.4 -1.78 0.72 -3.45 0.42 -3.64 -0.96 -2.67 -1.04 -1.84 -0.2 -3.47
-0.28 -2.87 0.31 -3.69 -0.33 -3.41 -0.82 -2.32 -0.37 -2.62 0.13 -3.62 -0.68 -2.87 -0.36 -1.82
-0.95 -2.93 -0.15 -2.34 -1.55 -2 -0.93 -1.45 0.57 -3.21 -2.3 -1.13 0.2 -3.36 0.8 -2.97
-1.83 -3.5 1.8 -3.62 1.73 -3.59 1.11 -4.02 0.23 -3.99 0.02 -3.45 1.15 -3.32 1.24 -2.56
-1.26 -3.86 -1.93 -1.35 -0.24 -4.21 1 -3.34 -1.48 -1.63 -1.15 -2.73 0.46 -4.38 -1.24 -2.73
--1.97 0.11 -2 1.35 -2.12 1.95 -1.8 3.41 -1.8 3.5 -1.69 2.84 -1.71 2.84 -1.84 2.04
--2.21 1.89 -1.91 2.08 -1.93 3.32 -1.75 2.8 -1.8 2.78 -1.46 2.99 -2.52 2.32 -2.48 2.32
--2.19 2.52 -1.68 2.21 -1.75 3.43 -1.57 2.93 -2.12 3.17 -2.2 3.23 -0.22 2.47 -1.32 1.11
--1.93 2.67 -1.06 3.27 -1.33 3.73 -2.11 1.93 -1.49 2.35 -1.13 3.23 -1.15 -0.17 0.61 -2.95
-1.3 -3.73 -0.63 -3.06 -1.41 -2.28 -2.26 -1.48 -2.61 0.29 -2.69 1.54 -2.21 1.15 -2.3 2.41
-2.23 1.43 1.43 2.26 -0.83 3.4 -1.69 -2.45 -2.19 -1.43 -2.82 0.76 -2.47 1.69 -2.25 0.5
--2.39 -0.19 -1.48 2.21 -1.8 2.11 -1.99 0.67 -1.89 1.35 -0.3 -0.07 0 -299.69 1.08 -0.83
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-0.7 -3.06 p
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-2.73 0.26 2.74 0.29 3.36 0.43 3.34 0.43 3.32 0.45 0.96 0.2 0.93 0.22 0.91 0.19
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-2.65 0.61 1.3 0.31 1.78 0.41 1.74 0.43 1.71 0.41 3.91 0.67 3.86 0.72 3.82 0.71
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--3.54 -0.91 p
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-3.49 1.15 3.5 1.17 3.54 1.21 3.53 1.24 2.15 0.72 4.38 1.48 2.24 0.78 3.41 1.24
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-0.2 3.82 -0.91 2.28 0.04 2.84 0.37 2.38 2.23 3.65 2.13 2.62 1.17 2.56 2.19 3.17
-0.74 2.52 -0.89 3.21 0.28 2.47 -0.91 3.21 -0.07 3.34 2.04 3.21 1.74 4.62 2.21 0.35
-2.78 1.91 2.72 1.43 2.78 1.93 2.28 1.84 2.43 3.38 2.22 0.37 -0.29 2.45 1.89 1.82
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--2.02 -2.43 p
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--1.3 3.08 -0.37 2.67 0.07 2.28 0.55 2.71 0.06 2.71 1.5 2.78 0.59 2.74 0.98 2.76
-1.04 3.21 1.04 3.25 1.91 2.32 2.43 1.49 1.48 2.37 0.96 2.34 0.56 3.21 -0.48 3.17
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--1.43 2.71 -1.43 1.76 -0.52 2.3 -0.93 1.34 0 2.32 -1.45 2.21 -1.95 2.24 -1.46 2.28
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--0.78 2.43 p
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-1.84 1.26 1.54 2.26 1.7 3.67 1.52 2.19 1.93 2.21 2.39 2.2 1.63 3.17 1.11 2.3
-1.11 2.75 1.39 1.3 2.65 1.17 1.46 1.76 1.13 2.75 1.87 2.23 3.77 0.16 3.45 1.15
-1.84 2.26 3.04 1.19 2.22 2.17 1.84 2.26 1.5 3.21 -1.06 1.99 0.37 4.67 1.71 1.3
-1.39 2.3 0.15 1.85 2.15 1.73 1.73 2.28 2.48 1.26 2.8 0.82 2.91 1.71 1.32 2.3
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-2.6 0.95 2.78 0.04 2.84 0.07 2.13 -0.58 2.54 -0.5 2.73 0.56 3.02 -0.86 2.19 1
-1.95 1.9 2.3 2 2.59 1.06 3.12 0.26 0.16 -2.02 2.16 -0.46 0.22 2.04 1.93 -1.04
-2.52 1.09 3.26 1.37 0.95 2.23 0.7 3.21 -0.15 3.02 -0.11 3.02 0.22 3.11 0.04 3.56
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--2.69 -0.14 -1.3 1.67 2.06 1 0.79 1.22 1.67 0.91 1.99 1.06 2.21 1.56 0 6.56
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-2.13 0.91 2.04 -0.33 2.54 0.65 0 16.34 -1.91 0.39 -0.13 1.91 1.82 -1.08 0.93 0.71
--1.11 1.23 p
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--2.6 1.5 0.71 2.02 1.97 1.3 -3.36 -0.08 -2.29 2.06 -2.04 2.54 -1.45 1.67 -1.91 2.12
--2.09 1.11 -0.57 2.78 -0.28 3.27 -0.15 2.39 -2.37 1.07 -2.45 1.52 -2.69 1.04 -2.89 2
--3.54 1.89 -2.47 0.15 -1.26 1.24 -2.62 1.11 -0.3 1.82 -1.25 1.26 -0.76 2.25 -2.97 1.52
--0.07 -1.87 -1.17 -1.08 -1.24 1.28 -0.61 1.85 0.43 1.43 -2.09 0.24 -1.8 -1.58 -1.63 -0.17
--0.11 -1.84 1.2 -1.29 -0.39 -1.93 0.58 -1.8 1.98 -1.65 1.91 -1.22 2.26 -1.17 1.41 -2.21
-0.72 -2.29 1.25 -1.28 2.32 -1.15 2.67 -1.11 3.51 0.43 -0.73 -1.96 2.28 -0.7 2.73 -1.06
-4.77 -2.22 2.59 -1.97 -0.37 -2 -1.52 0.3 -0.73 1.78 -2.21 0.17 -1.93 0.72 -0.76 -1.98
--0.26 -2.88 2.4 -1.11 0.42 -2.34 -2.02 -1.21 0.38 -2.3 -1.22 -1.56 -0.54 -1.5 -1.45 -0.17
--0.24 1.41 0.35 2.36 0.89 1.52 -0.73 2.3 -0.57 0.84 0 -6.59 -1.15 -2.52 -0.28 -2.87
-0.98 -1.78 -0.43 -1.91 -3.11 0.11 -1.73 1.7 -2.32 0.28 -3.26 1.54 -1.48 -0.13 -1.82 2.19
-1.72 1.59 2.21 0.22 2 -0.79 2.58 0.29 3.28 0.8 2.82 1.28 0 6.59 -0.91 1.37
--0.63 1.81 -3.06 0.61 -1.43 2.15 -1.5 0.34 -2 1.2 -2.08 1.65 -2.82 -0.28 -2.32 1.17
--2.08 2.17 -2.41 2.08 -2.11 -0.18 -0.57 1.84 -2.36 2.11 -1.3 2.24 -0.7 2.76 -2.15 0.21
-0 -5.96 0.28 -2.78 0.52 -1.81 -0.52 -1.95 -0.02 -0.13 0 -3.1 2.04 -2.21 0.59 -2.26
-0.24 -2.34 -0.11 -2.37 -0.54 -2.34 -1.84 -0.13 -1.3 -1.97 -2.02 1.78 0.15 2.8 -0.24 2.8
--1.28 2.21 -0.17 1.89 1.13 -0.43 1.39 0.58 1.97 2 0 3.1 -0.39 -2.69 -2.37 2.19
--0.54 1.8 0.15 2.37 2.02 1.08 0.87 1.91 0 5.96 -0.3 0.04 -1.45 0.82 -2.11 0.3
--1.65 -1 -0.87 -1.95 -2.32 -1.02 -2.37 -1.52 -1.56 -1.98 -2.45 -0.57 -2.54 1.28 -2.82 0.34
--2.48 0.85 -1.71 -1.43 -2.39 -1.46 0.43 -2.75 0.48 -3.21 -0.72 -0.5 0 -10.66 2.26 -1.34
--1.43 -2.28 -1.58 1.25 -2.15 0.39 2.9 1.97 0 10.66 -1.36 -0.93 -2.5 -1.95 -2.5 -0.91
--2.15 -0.98 -2.17 -3.23 -2.17 -2.8 -1.48 -2.35 0.35 -2.34 2.23 -1.84 -2.61 -1.84 -1.54 -1.89
--0.74 -2.3 -2.25 0.02 -2.32 -2.78 -1.61 -2.32 -2.65 0.04 -2.64 0.07 -2.72 0.06 -2.66 -0.37
--2.32 -0.87 -2.43 -2.28 -2.24 1.06 -1.35 2.86 -0.69 1.43 -2.2 1.52 -1.91 0.08 -1.93 -0.84
--2.21 0.63 p
--2.74 -0.32 0.98 2.3 0.24 2.8 0.61 2.78 -1.84 0.11 -0.93 1.91 0.61 2.78 1.63 1.8
-0.7 3.2 0.96 2.75 0.61 2.3 -0.48 2.84 -0.18 1.84 0.56 2.32 -1.45 3.32 1.2 1.32
-2.52 0.29 1.58 2.23 3 -1.56 2.8 -0.15 3.16 0.28 3.11 -0.57 2.71 -1.04 3.56 0.82
-3.47 -0.52 2.41 -0.54 2.13 0.46 1.07 1.39 0.76 3.19 0.37 2.32 0.39 3.21 0.37 3.19
--0.97 2.34 -1.98 1.39 -0.98 1.39 0.37 1.39 -1.58 1.82 -0.66 0.95 -2.6 0.5 -2.22 1.43
--1.95 0.06 -1.59 1 -0.15 2.75 2.25 0.38 1.98 0.86 2.58 0.37 1.21 -1.84 2.61 0.39
-2.24 -0.02 -0.57 3.23 -1.24 2.76 2.24 -0.02 0.93 -2.32 1.91 0.43 2.21 -0.45 0.63 2.32
-1.54 0.87 1.89 0.5 1.57 0.89 0.25 2.32 0.59 1.8 2.13 0.96 2.41 1.43 2.11 0.98
-1.43 1.84 1.11 1.84 0.79 1.87 0.48 2.25 1.13 0.55 0.2 -2.72 1.56 -0.87 1.41 1.43
--0.11 1.37 -1.52 0.35 -0.17 2.28 1.95 1.04 3.23 0.18 1.02 1.41 2.34 0.16 1.85 -0.78
-0.07 1.8 1.28 1.46 -1.28 1.26 0.99 1.02 -1.32 1.7 -0.32 2.69 -1.84 1.22 -0.57 2.23
--0.3 2.7 0.35 1.8 1.2 1.46 2.34 0.67 1.06 1.87 2.06 0.63 0.28 -1.78 -0.48 -2.32
-0.26 -1.76 1.89 0.18 0.28 -1.76 -1.34 -0.74 0 -2.6 1.74 -0.98 0.09 -1.74 -2.09 -0.19
--1.41 2.17 1.67 0.74 0 2.6 -0.7 -0.39 -0.99 -2.8 -0.76 -2.78 2.15 -1.17 0.2 -1.37
-3.34 -1.06 -0.32 -1.82 2 0.2 1.5 1.52 1.3 1 2.19 0.74 1.16 1.5 1.5 -1.69
--1.28 -1.02 2.14 -0.7 1.81 -0.22 2.58 1.71 2.74 0.81 1.84 2.08 2.56 1.32 2.64 0.88
-1.82 -2.5 1.96 0.33 1.41 1.19 0.2 2.39 2.08 1.78 0.29 2.86 -1.07 2.59 -0.93 3.08
-0.5 1.93 0.21 2.84 2.13 0.93 1.97 -1 1.63 -1.57 1.93 -0.02 1.09 1.65 -1.91 5.21
--1.89 0.04 -1.52 2.02 -0.8 2.19 1.47 1.74 2.24 0.98 2.47 1.04 2.95 -0.17 3.11 0.82
-0.58 1.59 1.59 2.34 3.19 -0.06 -2.17 1.8 -1.67 -0.93 -3.02 1.52 -3.19 -0.87 -2.19 -1.47
--2.24 -1.5 -2.21 -1.5 -2.47 -1 -1.2 0.13 0 -5.54 1.93 -1 -1.52 -0.93 -0.09 0.11
-0 -0.7 2.71 -0.11 -1.13 -1.34 -1.15 -1.37 -1.43 1 1 1.82 0 0.7 -0.48 0.67
-0.16 1.15 0 5.54 -1.74 0.17 -1.89 1 -2.56 0.87 -0.58 1.72 0.07 2.78 -1.41 1.63
-0 -21.66 -0.95 -1.43 0.61 -2.22 -1.28 -1.32 -1.13 2.13 0.67 1.65 2.08 1.19 0 21.66
--0.63 0.74 -1.11 2.54 0.2 2.78 1.41 2.62 1.15 3.04 1.26 2.56 0.41 2.89 1.24 1.25
--1.09 2.5 -2.69 1.17 -1.43 -0.78 -1.56 -0.37 -1.95 0 -0.37 -1.88 -1.09 -1.18 0.68 -1.21
--0.63 -1.96 2.12 -0.91 -1.08 -2.04 -0.24 -1.91 -1.76 -1.71 -1.3 -1.61 -1.47 -2.08 -1.04 -2.89
--0.52 -1.46 0.48 -2.64 0.26 -2.67 0.83 -2.16 2.41 -1.41 2.39 -1.41 1.24 -1.65 -0.35 -1.43
--1.34 -1.61 1.21 -0.67 -1.89 -1.7 -1.8 -2.14 -0.07 -1.82 0.65 -2.65 0.02 -2.3 0.2 -3.14
--0.59 -3.28 -1.91 -0.28 -2.15 -0.29 -1.17 -2.45 0.61 -1.74 -1.91 -0.22 -2.23 -0.26 -0.33 1.76
--1.48 2.13 p
-0.48 1.87 -1.23 1.08 0 -3.41 0.91 -2.08 -1.15 -1.39 1.02 -0.93 -1.85 -1 -0.65 0.04
-0 -1.26 1.75 -0.32 -0.69 -0.93 -1.63 -0.68 -1.32 1.24 1.89 0.7 0 1.26 -1.34 0.13
--1 2.63 2.04 1.3 2.02 1.3 0 3.41 -1.09 0.93 -1.52 2.56 -1.59 2.97 -1.52 2.56
--1.28 3 -1.74 1.2 -0.73 -1.85 -1.52 -0.15 -2 -2.41 -1.33 -1.89 -2.45 -1.52 -2.69 0.26
--2.74 1.17 -1.43 1.29 0.08 2.25 1.39 1.82 -2.25 -0.54 -0.68 1.74 0.85 1.87 -1.67 2.11
--0.41 2.21 -0.67 2.21 1.09 1.78 -1.09 1.72 1.98 1.88 1.69 1.84 1.61 2.32 2.71 0.63
-1.13 1.82 0.82 2.3 1.74 -1.17 1.21 2.32 1.17 2.3 1.15 3.23 1.8 1.95 0.48 2.71
-0.56 2.3 0.33 2.21 0.67 2.32 1.43 2.41 0.22 2.21 1.93 2.96 -2.52 -0.81 -2.14 -0.74
--2.04 -2.06 1.21 2.37 2.76 1.3 -1.63 1.09 1.65 1.56 1.34 1.95 0.2 -2.62 1.07 1.49
-0.7 -1.62 1.46 2 -1.37 0.19 -0.54 1.71 2.02 1.2 0.89 2.84 2.54 0.5 2.37 1.43
-0.79 2.43 1.41 1.7 2.34 -0.79 0.35 1.89 1.2 1.26 1.23 -2.91 1.09 2.17 1.52 -1.91
-0.26 3.32 2.91 -0.02 2.71 -0.55 2.58 -0.58 -1.26 -2.34 -2.64 -0.33 3.32 -0.87 2.65 0.39
-1.11 1.37 2.41 -0.13 1 -1.56 2.99 0.59 3.06 0.21 3.06 -0.26 3.06 -0.78 3.04 -0.7
-2.8 -0.3 2.95 -0.7 2.17 -1.65 1.78 -2.3 -0.2 -2.17 -1.37 -2.15 -2.14 -1.5 -2.86 -0.13
--2.39 -0.48 -2.23 -0.33 -2.91 0.42 -2.98 -0.13 -2.95 0.95 2.7 -1.99 2.54 -0.57 3.43 -1.24
-1.5 -2.4 1.26 -2.04 1.47 -2.43 0.31 -0.02 2.95 -0.28 1.43 -0.43 2.13 -0.65 2.9 1.15
--1.61 2.41 -1.71 -0.7 -2.97 1.3 -0.13 2.02 2.13 0.3 2.87 -0.34 2.36 0 2.87 0.71
--2.8 1.87 -2.49 1.52 0.63 2.34 1.2 2.11 0.13 2.23 2.34 0.57 2.08 0 -0.08 2.1
--1.93 2.26 -1.93 0.11 -1.25 2.61 -2.23 2.61 -3.3 1.02 2.91 0.41 2.11 1.13 2.04 -0.54
-2.43 -1.43 -1.8 -1.52 0.56 -2.48 2.34 0.22 2.3 -1.02 1.87 1.06 0.52 2 -2.43 2.58
-0.93 1.67 0.81 2.24 0.3 1.97 1.02 1.89 0.33 2.06 0.3 2.06 2.43 -1.97 2.84 -0.39
--1.02 1.74 1.15 1.47 1.99 0.98 -0.25 2.39 0.43 1.75 2.91 -2.25 1.52 0.59 -1.71 1.32
-0.52 1.13 -0.48 1.67 -2.48 0.54 -2.19 0.89 -2.61 -0.24 -2.06 0.28 -1 1.83 3.56 -0.33
-3.73 0.65 2 1.26 3.17 0.11 1.64 1 2.48 0.32 0.5 0.2 1.71 0.65 2.61 -0.24
-2.37 0.29 -2.24 2.4 -2.25 -0.17 -3.36 1.04 -1.98 -0.63 -1.82 1.13 -1.91 1.96 -2.84 0.76
--2.19 1.61 -0.63 2.6 -1.93 1.96 -2.76 1.78 -1.93 1.98 -1.93 1.91 -0.16 1.73 2.37 -0.37
-1.24 -1.13 2.69 1.07 2.04 -1 2.13 -1.71 2 -2 3.23 -0.2 2.97 -1.49 2.97 -1.54
-3.32 -1.93 2.95 -1.59 3.45 0.11 1.99 -1.91 2.46 -1.37 1.75 -2.39 1.15 -2.12 0.35 -3.15
-3.64 0.2 -0.37 2.3 -0.82 2.67 -1.91 2.15 -1.65 2.63 -3.77 1.33 -2.89 1.66 -0.68 2.11
--1.91 -2.04 -3.73 1.46 -2.84 1.75 -2.04 1.91 -2.96 0.56 -2.52 0.11 -2.54 2.21 -0.32 1.65
--1.65 1.57 p
--2.17 0.82 -2.17 -0.43 -0.76 0.84 2.73 0.33 3.26 -1.07 2.28 -1.69 3.06 -1.41 4.34 3.38
--1.91 -0.02 -2.54 -1.21 -2.95 0.47 -0.41 1.52 2.13 0.43 -0.7 1.22 -2.93 -0.87 -1.08 1.61
-2.04 0.32 0.61 1.3 2.22 0.8 3.16 0.37 -0.39 2.09 -3.04 0.06 -1.78 -1.37 -3.21 1.17
--3.97 0.74 0.28 2.23 0.15 2.39 -0.48 2.19 -0.07 2.36 -2.86 0.11 -2.24 0.71 -1.97 1.65
--1.96 1.91 -1.39 2.56 -0.98 2.04 -2.16 1.61 0.02 1.7 -1.78 2.73 2.3 -0.63 -1.43 3.23
--2.21 -0.29 -0.3 2.22 -3.43 0.21 -3.19 1.69 -2.64 1.63 1.69 2.02 2.87 -1.91 -0.52 1.84
-0.04 1.58 3.8 -1.13 -0.52 1.54 -1.82 0.33 -0.57 1.52 -0.17 1.71 0.52 1.43 1.63 1.34
-2.63 0.59 3.43 0.09 2.89 -1.25 3.64 -1.76 2.89 -1.65 3.5 -1.76 1.63 -1.58 3.08 -1.02
--0.43 1.48 -1.65 1.73 -1.8 1.82 -1.37 -0.89 -2.04 0.87 0.63 1.33 0.63 1.11 -0.58 1.32
--2.68 -0.32 -0.97 -1.65 -1.41 0.58 -0.18 1.58 2.56 -0.52 3.39 1.25 -1.89 1.48 -1.28 1.37
-0.13 1.82 -1.11 1.84 2.82 0.07 -0.18 2.13 -1.34 2.73 -1.82 1.65 -1.61 -1 -2.32 -0.15
--1.8 2.28 -0.7 2.91 -0.87 2.3 1.48 2.32 3.41 0.37 3.5 -0.37 2.17 1.63 1.21 1.87
--0.28 1.54 -3.04 0.49 -2.84 -0.34 -2.91 -0.3 1.08 1.93 -0.41 1.52 -2.3 0.26 -1.78 0.89
--0.39 1.39 -3.55 2.17 -2.29 2.09 -1.32 -1.56 -1.17 -1.15 -2 -0.14 -2.34 1.59 -0.84 -1.37
--2.35 1.93 0 -46.89 1.56 -1.76 0.43 -2.08 1.98 -1.71 -0.78 0.17 0 -31.41 2.82 -1.63
-0.37 -2.21 0.11 -2.41 -0.43 -2.06 0.52 -2.56 0.43 -2.52 1.37 -2.3 0.97 -2.56 1.26 -2.3
-1.21 -2.34 1.11 -2.34 1.37 -2.17 2.37 -2 2.78 -1.67 2.82 -1.02 3.41 0.2 -0.16 -1.5
--2.6 -1.37 -2.87 -0.93 -1.34 0.15 0 -10.07 3.3 -0.22 0.91 -1.73 -1.34 -2.02 -2.56 1.88
--0.3 2.09 0 10.07 -1.65 0.19 -3.54 0.5 -2.3 2.02 0.28 2.02 -1.93 1.11 -1.43 2.64
-0.11 1.98 -2.21 0.8 -0.8 2.56 -1.97 2.91 -1.67 1.2 0.5 2.43 -0.65 1.48 -0.78 2.11
--0.09 2.78 1.67 1.75 0.61 2.32 -1.28 1.73 -0.26 2.3 1.89 0.71 0 31.41 -2.13 0.48
--3.54 0.84 -3.02 0.7 -1.34 0.93 1.37 1.39 2.06 1 3.41 0.04 0 46.89 -0.15 0.13
--2.02 1.65 -1.82 1.5 0 -3.17 2.75 -2.14 0.33 -1.65 -2.32 -0.41 -0.87 0.34 0 -0.78
-1.43 -0.46 -1.45 -0.99 -1.21 0.8 1.23 0.66 0 0.78 -1.52 0.63 0.05 2.34 1.58 0.89
-0 3.17 -0.24 0.2 -1.73 2.25 -3.15 1.61 -1.89 1.72 1.76 1.67 -0.35 1.39 -1.89 0.85
--0.8 1.56 1.32 1.07 -2.71 0.72 -0.17 0.06 0 -21.09 2.93 -0.3 0.39 -1.21 3 -0.91
-2.58 -0.79 1.22 -1.32 -1.43 -2.09 -3.04 -1 0 -38.78 2.99 -0.67 2.85 0.17 0.74 -1.41
--1.05 -1.34 -1.02 -1.74 -2.87 -0.43 -1.21 -1.54 -2.84 -0.17 -2.84 1.49 -2.89 0.67 -2.32 1.91
-1.67 0.52 1.65 0.7 1.76 -0.46 2.24 0.32 0.99 1.3 2.15 0.67 0 38.78 -0.91 -0.32
--3.19 0.7 -0.5 2.82 -3.41 -0.32 -0.09 1.97 -1.04 0.61 -0.72 1.28 1.15 0.74 3.06 0.15
-0 21.09 p
--2.24 0.87 -3.75 0.68 -2.91 1.34 0 -17.77 2.08 -0.95 1.82 -2.59 -1.02 -2.13 -0.57 1.13
--2.62 1.74 -2.19 1.78 2.5 1.02 0 17.77 -0.24 0.11 -2.84 1.28 -0.91 1.11 0 -96.24
-2.82 -0.74 0.28 -1.34 -1.32 -0.68 2.6 -1.28 0.31 -0.96 -1.85 -1.12 0.68 -1.89 -1.18 -1.06
--0.89 1.87 1.39 1.09 -1.75 1.34 0.7 2.02 -1.17 1.02 -0.61 1.74 0 96.24 -0.32 0.39
-0.45 1.72 2.5 1.08 -2.21 1.76 -4.1 1.13 -1.3 0.22 0 -105.02 2.52 -1.09 1.15 -1.7
-1.61 -0.15 -0.43 -1.8 -0.87 -0.24 0 -1.54 1.82 -0.16 -1.13 -1.17 -0.7 1.33 0 1.54
--1.39 -0.39 -0.85 1.08 1.07 0.93 -1.67 1 0 -5.12 0.45 -1.61 1.37 -1.02 -0.91 -1.11
--1.7 -0.33 -1.15 0.95 -1.06 -0.67 -1.52 -0.09 0.35 2.54 1.46 -0.04 0.93 -0.74 0.63 2.04
-1.15 0.07 0 5.12 -0.43 0.25 -0.7 2.09 0 105.02 -3.49 0.58 -4.23 1.33 -3.23 1.3
--2.3 -0.61 -2.17 -0.98 -2.6 1.06 0 -127.66 0.84 -1.37 -0.2 -2.48 -1.41 -1.73 -3.69 -0.09
--3.21 1.21 1.32 -2.45 3.67 -0.95 1.71 -1.74 2.04 -1.28 2.89 -0.98 -1.61 -3.08 -2.82 0.21
-0 2.63 -1.82 0.93 -1.46 2.02 -1.13 -1.32 0.67 -1.89 -0.11 -2.75 -0.11 -2.63 0.39 -2.5
--3.45 2.08 -2.34 2.09 -1.08 2.13 1.43 1.58 -2.46 -0.37 -2.54 2.08 -1.56 2.95 -0.48 2.04
-3.11 0.83 2.12 -0.46 0.33 1.87 2.02 -0.17 -0.63 1.56 1.58 1.63 1.76 -1.3 1.5 1.67
-2.28 -0.29 2.43 0.31 0 127.66 -0.22 0.09 1.08 0.84 2.5 -0.41 0.39 1.3 -2.5 1.11
--0.17 1.37 -2.52 0.04 -2.02 -0.73 0.59 -1.78 -0.84 -2.26 -3.71 0.79 -3.52 0.7 -3.58 0.67
--4.12 0.26 -3.34 1.15 -3.45 0.74 -0.72 0.23 0 -5.88 0.34 -1.17 -3.38 -1.63 -4.38 -0.07
--2.21 1.41 4.43 1.2 2.17 -0.39 3.04 0.65 0 5.88 -2.34 0.8 -0.7 0.35 -2.71 1.3
--2.76 1.24 -3.84 0.86 -0.61 0.2 0 -251.65 0.48 -1.34 -2.72 -1.7 -1.21 -2.21 2.43 0.41
-2.15 -0.07 2.64 -0.04 0.24 -1.82 -0.86 -1.75 -1.18 -2.23 -1.43 -1.76 -1.71 -1.3 2.19 -0.04
-2.21 -0.98 1.06 -1.78 0.5 -2.71 1.08 -2.28 2.3 -0.89 0.85 -2.28 0.61 -1.78 0.87 -1.37
-0.57 -1.84 -1.15 -1.34 0.89 -0.87 1.17 1.36 1.48 0 2.09 -0.91 0.93 -1.78 -0.85 -2.3
--2.08 -1.37 -1.5 -2.3 3.08 -0.41 -1.8 -2.32 -3.12 -0.89 -2.78 0.02 -2.78 0.45 -2.5 -1.32
--2.76 0.98 -2.52 -0.41 -0.74 -2.24 -3.05 0.98 -2.29 -1.71 -1.84 0.52 2.3 1.76 1.95 1.73
-1.7 2.23 2.13 -0.06 1.84 -0.04 1.28 2.19 -2.47 -1.3 -1.76 1.41 -1.8 0.57 -2.47 -0.39
--0.52 1.39 2.23 1.26 1.84 0.87 0.16 2.71 -2.11 0.09 1.32 1.73 -0.52 1.39 3.21 -0.54
-2.07 0.37 0.11 2.28 1.21 2.24 -1.71 0.04 -1.35 1.84 1.24 2.21 -2.61 -0.82 -2.62 -0.83
--1 1.89 1.61 3.06 -1.26 1.85 -1.82 -2.13 0.13 1.78 -1.95 0.09 2.37 1.67 0.43 2.23
--1.98 -0.8 0.16 1.82 1.58 2.6 -2.15 0.11 -1.24 1.41 1.18 0.8 1.52 -0.93 0.41 1.76
-1.48 1.69 1.21 2.19 2.87 -0.11 2.87 0.33 0 251.65 -2.91 0.96 -2.8 1.11 -1.93 1.5
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--0.93 -0.71 p
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-0.26 -1.87 -1.09 0.52 -0.74 -0.7 0 -8.33 0.87 -1.65 0.02 -1.19 -0.89 2.84 0 8.33
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-1.78 0.43 0.61 2.54 -0.63 0.89 0 179.37 -1.93 -1.07 -2.26 -0.84 -2.74 -0.37 -1.71 0.07
-0 -116.99 2.41 -1.35 2.39 -1.32 0.79 -2.25 -1.61 -0.98 -1.7 0.93 -1.91 0.46 -1.54 1.46
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--1.02 1.47 -1.67 -0.15 -1.3 1.65 -0.24 3.06 -1.19 0.91 0.73 0.78 0 33.04 -0.25 0.39
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-2.73 -0.95 2.73 0.09 3.17 -1.49 1.32 -3.59 0.89 -3.56 0.93 -3.49 0.43 -2.96 -0.41 -3.79
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--2 -0.56 -1.62 1.32 -1.5 0.37 -0.67 -1.47 -4.1 2.14 3.04 -0.78 0.11 1.43 -2.54 1.74
-2.54 0.63 3.08 -0.8 1.7 1.04 0 157.18 -1.43 0.41 -3.39 -0.02 1.19 -2.04 -2.58 0.32
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--0.98 -2.78 p
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-0.67 -2.59 -0.17 -1.65 -3.3 1.17 -2.32 1.3 -1.32 1.43 -1.95 0.33 -2.7 2.32 0.35 -1.61
--2.39 0.78 -2.66 2.95 2.43 -0.2 -1.24 2 -3.08 2.91 1.2 -2.02 -1.2 -1.82 -1.15 2.58
--2.09 3.04 1.43 -0.34 -2.21 1.91 -1.59 2.58 1.26 -4.82 -3 3.49 -0.24 1.63 -2.02 0.37
--1.82 2.52 -1.75 1.47 -2.41 3.67 -2 2.52 -1.35 2.13 0.96 0.61 4.14 -3.45 -2.38 3.05
--1.67 2.56 -1.32 3.73 -1.67 -0.11 -2.43 0.89 -0.49 -1.67 -1.59 2.13 0.63 2.73 -1.98 1.52
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--1.67 1.56 -0.49 2.67 -1.98 2.08 -0.78 2.67 -2.65 4.25 0.3 1.02 -1.59 1.08 -0.34 2.11
--2.52 1.11 0.63 -2.11 -1.85 0.52 -1.24 1.39 0 -1.89 2.82 -1.11 1.63 -2.13 0.11 -2.16
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--2.88 -1 -2.52 0.26 -2.26 -0.76 -3.15 0.76 S
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-0.37 2.91 -1.26 2.38 -1.13 2.41 1.39 3.88 0 2.65 0.37 2.14 2.02 2.91 1.26 3.28 S
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--2.41 1.13 1.39 1.25 3.77 -0.26 -2.52 1.89 2.02 1.15 3.77 0.24 4.91 1.52 -2.89 1.39 S
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--0.5 1.65 -2.28 0.87 3.78 1.52 3.64 0.75 3.54 1.13 3.14 1.89 2.63 0.63 3.28 0.63
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--0.26 1.25 1.26 2.28 0.37 2.76 -4.02 0.63 S
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-4.14 2.14 3.78 2.65 -1.63 0.5 -4.41 -2.52 -3.02 -2.13 -3.54 -1.65 S
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--2.25 -0.26 -3.91 -2.88 -2.52 -2.65 -3.25 -2.91 S
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--0.89 0.26 -3.14 -2.54 S
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--2 -4.41 -1.25 -4.29 S
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-1.63 3.52 1.76 1.89 2.52 4.29 2.78 3.64 2.52 5.04 2.75 4.29 1.76 3.78 2.91 3.41
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--2.91 -1.65 0.26 1.79 -2.26 -0.13 -1.15 1 1.15 2.78 S
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--2.78 -1.78 -2.26 -0.13 -2.14 0 S
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--2.78 -0.5 S
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-1.89 1.88 2.78 0.89 0.37 1.64 -1.26 1 S
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--2.75 0.5 -1.89 -1.39 1.37 -1.5 -1.63 -3.04 1 -1.89 2.64 -1.26 1.65 -2.02 -1.26 -1 S
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--2.52 0.13 -2.52 0.37 -2.52 0.13 S
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--2.76 -0.87 S
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--1.26 1.76 -2.02 0 S
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--1.64 2.02 -2.89 1.13 S
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-1.13 -0.99 -1 -1.65 2.75 -2.75 -1.36 0.24 -3.04 2.78 1.15 -3.02 -1.89 0.87 -3.14 0.63 S
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--3.54 1.63 -2.12 1.78 -1.89 1.89 -3.64 2.12 S
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--1.37 1.89 -2.78 0.76 -1.63 -1.02 -3.14 0.76 -2.52 -0.64 2.52 -1.75 S
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--1 2.14 -1.65 1.89 -1.49 1.89 -2.02 0.13 -0.76 -0.76 S
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--2.38 0 -1.89 -0.52 S
-539.65 3054.51 -1.12 -2.02 -2.15 0.52 S
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--1.26 -3.02 S
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-0.89 3.64 -0.75 0.76 S
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--1.39 -1.15 S
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--0.73 2.02 -1.26 1.78 -1.78 1.26 S
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--1.02 2.02 1.26 1.89 -1.76 -0.76 S
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-743.58 3233.66 -3.52 -1.76 -1.02 -1.78 2.91 0.63 2.5 1.26 -0.87 1.65 S
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--3.02 0.63 S
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-4.17 1.25 -2.65 0.76 S
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--0.99 1.76 -3.39 -0.24 2.89 1.89 2.13 1 3.04 1.75 2.63 2.02 -1.26 0.89 -2.89 -0.13
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--2.15 -0.5 S
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--1.26 -2.52 3.28 -0.37 0.63 2.52 2.13 2.26 1.39 2.4 1.25 3.02 1.89 3.02 2.89 1.89
--3.15 0.76 -2.88 -0.63 -3.78 -1.25 -3.52 -2.13 -3.28 0.74 S
-778.43 3245.5 -2.64 -2.14 1.52 -1.65 2.13 -0.24 S
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--1.63 -3.27 1.63 -0.76 3.78 0 -2.13 -2.02 -1.65 -3.78 -4.27 -1.52 3.02 -0.74 -2.39 -2.65
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--0.89 -1.5 0.13 -2.54 0.5 -2.26 1.26 -2.02 2.02 1.65 S
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-2.02 -2.02 3.78 2.26 0.99 2.78 2.39 2.14 0.76 2.26 0.75 3.14 1.76 2.78 4.01 2.15
--0.37 -4.3 -2.39 -3.02 0 -3.02 3.02 1.5 2.65 -1 2.52 1.26 4.02 1.39 0.5 2.26
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--1.52 1.5 0.49 1.89 0 1.52 -2.75 0.63 -0.63 1.65 -2.52 0.5 3.38 0.76 2.65 1.89
-3.02 0.63 1.39 1.26 S
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--0.5 2.02 -1.89 0.87 -3.02 0.63 -2.89 0 -2.88 -0.11 -3.91 -1.15 S
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-0.63 1.76 -0.37 1.76 -1.26 1.39 S
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--1.26 -2.78 0 -2.39 0.13 -2.02 S
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--0.5 1.63 0.13 2.15 -2.15 1.76 0.39 2.41 1.63 2.02 1.39 -0.26 1.13 1.39 1.89 1
--0.13 1.75 1.76 1.79 0.89 2.02 S
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-3.02 0.86 0 1.15 -3.15 -0.13 -2.39 0.76 -3.02 -0.26 S
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--1.75 1.91 -1.76 0.63 S
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--1.25 -2.29 -1.13 2.15 -2.76 -0.5 -1.02 -1.25 -1 1 -2.25 1.02 -2.78 -0.62 -0.24 -2.02
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--2.02 1.13 -1.5 0.89 S
-868.25 3286.07 -1.52 -0.26 -0.13 1.52 -3.02 0.63 S
-852.91 3293.88 -1.26 -1.52 3.02 1.13 -1.76 0.39 S
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-0.37 1 2.52 0.5 2.78 0.13 2.39 1.26 0.37 1.39 1.52 1.13 0.37 1.26 -1.13 0.52 S
-837.3 3290.61 -1.39 -1.89 -0.89 -2.15 1.52 -0.63 1.63 0.37 0.13 2.52 -1 1.79 S
-838.93 3299.28 -3.52 -0.24 -1.02 -1.39 2.52 0.63 2.28 0.13 -0.26 0.86 S
-831.25 3298.66 -3.02 -1 -2.39 -0.39 -3.14 -1.26 1.13 -1.62 S
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--1.76 0.63 -2.91 0 2.78 1.26 2 1.13 0 1.13 S
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--2.15 0 -3.41 -1.63 0.52 2 -0.76 1.26 S
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--0.37 1.76 S
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-2.52 1.52 1.26 1.5 -1.89 1.02 -2.52 1.26 -2.39 1 S
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-0.26 -1.89 3.28 0.36 1.5 2.78 2.26 2.52 2.91 1.89 3.88 0.14 3.91 1.25 2.89 0.63
-3.04 -0.87 2.39 -0.52 2.12 1.25 0.39 2.02 -3.15 1.02 S
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--1.25 1.39 -0.39 1.76 -0.74 1.52 -1.89 0.13 -1.02 1.39 -2.76 0.5 S
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-0.89 -1.88 1 -2.02 3.14 1.76 3.52 0.99 1.52 2.29 3.02 1.88 -0.24 2.02 0.63 2.38
--4.3 -0.13 -3.01 0.89 -2.39 1.39 -2.02 1.26 S
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-965 3438.24 -2.15 0.76 -2.52 0 2.65 -0.89 2.02 0.13 S
-911.79 3444.16 -2.52 0.38 1.37 0.63 S
-903.73 3444.66 -3.41 -0.5 2.64 -0.39 0.76 0.89 S
-891.78 3442.41 -2.89 -0.63 S
-888.89 3441.78 -0.63 -0.89 S
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-853.64 3432.31 -3.25 -1.26 -2.52 -1.26 0.74 -0.99 3.91 0.87 -0.76 1.02 1.89 1.63 S
-891.38 3400.57 -0.5 1.25 -3.64 -0.86 -4.02 0.76 -3.27 -1.52 3.91 0.26 2.88 -0.52 4.64 0.63 S
-867.99 3410.13 -3.02 0.26 -3.02 -0.26 -2.26 -1.13 0.63 -0.86 2.52 0.24 2.63 0.89 2.52 0.87 S
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-2.65 0.26 1.39 2.13 1.13 2.02 1.39 2.78 S
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-700.54 3347.66 2.91 1.65 1.76 -0.39 4.01 1.15 2.52 -0.89 1.65 1.89 2.39 2.15 S
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--1.65 -0.37 -3.14 -3.04 -2.12 -2.38 0.24 -1.39 3.78 2.41 4.03 3.25 4.02 2.65 4.27 2.4
-2.65 2.76 3.02 3.28 3.28 2.65 -0.13 1.26 S
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--0.13 -1.89 -1.89 0 -0.76 -1.64 0.13 -2.39 2.14 -0.63 1.76 -1.52 1.5 -1.63 -0.5 -2.64
-0.76 -1.89 -1.76 -1.26 -1.02 -2.02 -1.37 -2.52 -2.52 -1.89 -1.26 -2.28 -1.76 -1.76 S
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-0.87 -1.89 -1.76 -2.39 -0.89 2.76 -1.89 1.65 -3.25 -2.02 -3.02 -2.02 -0.13 -2.78 3.15 -0.87
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-2.75 2.02 1.89 2.26 2.25 2.15 2.91 1.89 1.39 3.64 3.25 0.63 3.41 1.65 2.25 2.02
-1.89 2.38 1 3.65 S
-822.57 3188.3 1.89 -1.39 2.15 1.78 3.14 -0.39 3.15 -1.26 4.02 0.37 2.9 0.89 2.89 1.02
-2.25 1.63 2.14 1.63 2.89 1.39 2.52 0.63 2.78 -0.87 3.26 0.5 3.04 0 3.12 0.5
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-2.76 0.63 0.63 2.52 2.26 0.26 -0.24 -1.65 -0.5 -2.25 S
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-1.76 -1.52 1.89 -1.63 1.13 1.5 0.63 2.52 -1.36 1.02 1.76 0.63 1.39 0.64 2.25 -0.26
-0.76 1.78 -1.65 1.26 4.27 0.5 1.39 1.88 -1.99 0.37 S
-888.89 3220.42 2.13 2.41 1 2.39 0.13 2.52 -2.02 1 0.89 1.78 2.02 0.87 2.39 -1.37
-1 1.5 0 2.52 -0.37 1.89 1.63 2.28 0.39 2.02 1.76 1.13 1.25 1.89 1.89 1.89
-2.13 1.89 2.15 1.26 3.38 2.41 -1 1.89 -2.64 1 -2.25 -1.13 -1 0.75 -1.78 -1.02
--2.13 -0.63 -2.65 -0.13 2.25 1.78 2.15 0.74 1 0.63 0.26 1.39 -1.76 0.13 -0.75 -1.26
--1.63 0.13 1.13 1.76 -3.78 1.26 1.89 0.26 2.02 -0.76 3.15 -0.37 2.25 0.74 -0.62 1.65
--1.52 1 0.13 1.39 -0.87 1.89 -2.64 1.13 -2.65 1.52 -3.02 0 -3.64 0.76 -3.14 -0.5
--2.39 -1.13 -1.76 1.5 S
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--2.15 0 -3.28 0.11 -3.14 -0.63 1.39 -1.75 -1.63 -1.26 -3.91 -0.76 -2.75 1.79 -2.52 0.63
--2.15 1.26 -2.89 -0.52 S
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--2.62 -1.75 4.41 -1 2.25 -1.78 2.89 -1.37 3.4 1.13 2.52 0 2.88 1.39 3.78 0.87
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--1.39 1.13 -2.52 0 -1.39 -1.13 -1 1.52 -1 -2.41 -3.02 -0.37 0.87 3.02 -1.13 2.02 S
-868.12 3179.99 -1.52 0.89 -0.5 -1.26 -1.63 0.37 -0.89 -1.63 -1.99 -1.39 S
-903.73 3198.27 2.25 1.63 S
-892.27 3223.57 -0.76 -2 1.52 0 -0.76 2 S
-975.67 2807.36 -0.37 -2.75 -2.89 -2.02 1.5 -2.65 1.02 -2.78 1.89 -2.26 1.89 -2.78 2.89 -1.65
-2.02 -1.89 1.89 -1.62 1.89 -1.76 1.5 -2.28 2.02 -2.25 1.39 -2.29 0 -2.25 0.88 -1.39
-0.63 -2.28 1.39 -1.75 1.39 -2.65 0.5 -2.78 1.39 -2.25 1 -2.78 -2.39 -2.89 0.89 -1.25
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--2 -2.41 -1.02 -3.28 -1 -3.14 -1.02 -2.78 -0.61 -2.75 -1.52 -2.78 S
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-1.26 -2.65 1.75 -2.65 0.76 -3.02 1.76 -2.28 0.89 -2.14 2.13 -2.13 0.76 -2.15 -0.5 -2.26
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--0.39 -2.28 1.89 1.02 1.89 -1.75 1.89 -1.52 3.02 0 1.89 1.39 3.14 0.5 3.41 0.13
-1.89 1.39 3.15 0.63 S
-1040.61 2626.34 2.88 -0.39 2.39 1.02 2.78 -0.76 2.52 -0.39 1.89 1.39 3.38 0.13 1.65 1.39
-2.89 0.13 2.64 0.64 2.52 1.88 3.25 1.89 2.52 1.39 2.02 1.89 S
-1073.94 2636.54 2.64 2.26 2 1.89 2.52 2.02 2.64 2.28 1.65 2.38 1.87 2.78 2.15 2.39
-1.63 2.28 3.02 2 2.41 1.52 1.37 2.78 1.39 3.28 1.39 2.88 0.37 2.28 0.26 1.76
--1.63 0.89 2.26 3.28 2.88 1.13 1.89 1.13 3.65 1.63 2.91 1.29 1.89 1.5 1.76 2.91
-0 2.75 0.76 2.41 0.5 3.28 -0.63 2.26 -0.39 3.65 -0.5 3.17 -1.63 1.75 0.76 2.78
-2.52 2.13 1.87 1.65 2.02 2.52 2.39 1.26 S
-1124.5 2714.65 2.52 3.14 2.02 2.52 2.02 2.65 2.76 1.25 2.41 1.26 3.64 1 1.99 2.14
-2.91 2.78 1.88 2.15 2 2.63 1.52 2.64 0.63 3.04 -0.63 3.28 0.13 2.89 -0.63 3.27
-0.63 3.41 0.13 2.52 -0.39 2.78 0.5 3.02 0.13 2.88 -1.75 1.65 -1.76 1.26 -0.76 2.78
--1.39 3.14 -0.37 3.91 0 3.39 1.39 3.16 -2.28 2.52 -2.25 2.52 0.89 3.15 0.74 3.02
-1.26 3.27 1.39 2.65 1.63 3.78 1.65 3.77 -0.12 3.41 2.25 0 2.15 2.9 2.12 2.39
-1.16 3.14 1.62 2.39 1.63 3.28 2.52 3.14 1.13 2.78 2.02 2.39 2.15 2.02 2.02 3.04
-1.87 2.52 2.52 1.63 S
-1174.07 2844.9 2.02 2.39 2.02 2.52 1.5 3.04 1.89 3.02 1.39 2.39 1.89 3.17 1.02 2.75
-0.87 3.41 1.39 2.52 1.89 2.65 0.23 3.64 0.52 2.78 0.74 3.4 0.89 2.89 0.26 3.28 S
-1192.58 2888.74 1 2.38 0.75 2.91 1 3.52 -0.62 3.53 0.76 2.91 -0.37 3.64 -0.52 4.66
--3.14 0.11 -1.37 -3.14 -2.78 -2.02 -2.65 -1.76 -2.52 -0.37 -2.26 -1.76 -2.89 -0.75 -2.64 -2.91
--2.39 -1.13 -3.02 -0.37 -2.14 -2.15 -2.39 -1.76 -2.65 -0.13 -1.89 1 -2.26 2.02 -2.02 1.52
--1.89 1.13 2.28 2.14 -1.39 2.65 -2.64 1.89 -2.52 1.89 -2.13 2.02 -3.02 1.75 -2.65 2.39
--2.78 0.39 -3.25 0.74 S
-1135.59 2915.69 -1.78 2.54 -1.76 0.11 -1.76 2.15 -1 2.78 -1.12 3.27 -1.89 2.65 -1.78 2.13
--3.02 1.75 -2.76 0.89 -2.02 3.02 -0.89 2.41 -1.13 3.28 -0.24 2.88 -0.52 2.02 -2.13 2.02
--0.76 3.28 -1.89 0.63 -2.38 0.86 -1.89 1.02 -1.89 2.64 -0.87 1.76 -0.26 2.52 -2.02 1.52
--1.89 2.65 -1.76 2.02 -1.88 2.65 -1.5 2.13 -2.28 2.52 -0.87 2.28 -1.78 1.63 -1 2.28
--2.02 1.49 -2.12 2.02 -1.76 2.02 -1.15 2.39 -1.76 2.02 1.02 1.26 1.36 -2.26 1.89 -2.52
-1.65 -1.65 1.26 -1.63 2.13 -1.65 2.39 -1.37 0.89 1.26 -0.63 2.39 0.26 3.64 0.63 3.66
-0.74 -2.91 0 -3.02 S
-1091.67 2987.13 0.13 -3.04 2.26 0.63 2.14 -2 1.89 -2.02 2.25 -2.52 2.39 -2.4 2.02 -1.5
-2.39 -2.52 1.52 -2.65 2.02 -2.52 2.63 -0.89 2.52 -1.39 2.4 -2.39 1.87 -2.52 1.15 -2.91
-0.11 -2.02 1.02 -2.26 S
-1122.37 2952.23 1.26 -3.28 2.02 -1.52 1.26 -1.62 3.52 -0.13 2.64 -1.89 1.89 -2.52 1.87 -2.65
-1.89 -2.52 1.78 -2.15 1.99 -1 2.29 -2.52 1.88 -2.54 1 -2.38 0.13 -2.52 1 -2.78
-1.65 -3.28 1.37 -3.25 1.26 -1.15 0.13 -3.15 2.26 -2.52 2.15 0.13 2.39 1.13 2.52 1.25
-2.25 1.65 0.76 2.39 2.15 0.5 2.52 0.26 2.38 1.25 1.39 2.02 1.5 2.64 2.39 0.74 S
-1177.84 2920.86 2.28 1.78 1 3.02 2.14 2.26 2.52 1.91 2.13 1.76 2.15 1.88 2.13 1.89
-2.02 1.76 -0.5 2.02 0.24 2.28 2.02 2.39 2.02 1.89 1.89 2.25 2.13 1.39 2.02 0.26
-1.52 2.25 -0.13 3.41 1.88 1.89 1.76 1.26 0.76 1.39 -0.13 3.41 0.89 2.02 1.76 1.39
-1.5 1.76 -1.63 2.14 -0.63 3.15 0.26 3.02 1.75 0.89 0.24 2.88 0.26 2.52 0.87 2.14
--0.11 3.52 0 3.41 -2.39 0.76 -2.41 1.63 -2 2.02 -2.78 -0.11 -2.38 -0.65 -2.65 0.52
--2.52 1.13 -2.76 1.63 -1.26 3.41 -1.26 2.91 -0.26 1.63 -1.26 0 0.13 -2.25 -1.13 -2.28
--0.63 -2.52 -0.63 -2.65 S
-1188.67 2997.2 -1.39 -2.88 -0.24 -2.78 -1.52 -1.39 -2.78 -0.5 -2.13 -0.89 -0.89 -2.02 -2.76 -0.63
--1.26 1.15 -1.89 -0.63 0.37 3.38 -0.63 3.04 -1.49 2.76 -1.76 1.52 -0.89 -0.89 0.5 -2.64
--0.5 -2.89 -1.25 1.13 -2.39 1.89 -0.5 2.52 S
-1165.28 2996.44 -1.65 2.15 -2.52 1.13 -2.62 1.79 -2.78 1.62 -2.02 2.02 -2.12 2.38 -1.76 2.65
--2.15 0.26 2.02 1.89 -1.88 2.02 2.02 0.74 0.24 3.41 2.02 -0.87 2.02 -0.89 1.26 1.75
-2.25 -1.39 2.78 -2.76 2.89 -2.15 1.89 -2.52 2.02 -2.02 3.14 0.26 2.25 -0.63 2.76 -1.64
-2.41 0.37 2.13 -1.26 1.89 1.39 2.39 -0.63 1.75 2.52 1.39 1.79 S
-1187.29 3009.81 1.63 1.88 2.02 1 2.15 -1.26 1.49 -2.26 1.89 -2.52 2.91 0.74 2.63 0.76
-2.78 0.26 2.26 0.5 2.02 1 2.64 0.76 1.89 0.39 2.76 0.87 2.15 1.89 1.76 1.52
-2.25 1.26 0.89 1.76 2.13 -0.11 1.78 0.5 1.75 1.63 1.39 1.39 1.63 1.76 2.13 0.63
-1.89 -1.37 2.02 -0.63 1.76 -2.14 1.52 -2.29 2.39 0.26 2.25 -0.5 2.52 -1.78 2.78 -0.74
-2.13 1.5 1.78 2.41 0.74 -3.41 -1.36 -2.28 -2.28 -1.37 2.39 -2.41 2.14 -1.13 2.75 -1.63
-2.52 -0.26 2.28 1.52 1.5 2.25 0.5 3.02 -1.26 3.8 -0.61 2.88 1.13 0.26 1.13 -3.28
-1.5 -2.4 2.15 -1.89 S
-1270.45 3012.57 1.25 -3.78 1.13 -3.28 1.89 -2.64 1.39 -1 0.24 -2.52 2.15 -3.28 2.15 -3.15
-1.5 -2.91 1.76 -3.38 1.76 -2.28 2.15 -2.52 2.52 -2.28 2.52 -2.38 1.39 -3.02 1.89 -2.78
-1.75 -2.78 1.89 -3.26 1.89 -2.15 2.26 -1.89 1.76 -2.02 1.75 -2.78 S
-1307.42 2956.51 1.65 -2.89 1.89 -3.53 1.75 -3.41 2.13 -1.89 2.02 -1.39 2.02 -0.11 1.13 2.76
--0.37 4.43 1.13 2.63 1.5 1.64 -1 3.41 0.26 4.14 1.89 1.39 -1.26 3.78 -1.26 2.64
--1.15 3.28 0 3.54 -0.24 3.91 -1.13 4.01 -1.78 3.67 -1.76 3.51 -1.89 3.54 -0.74 3.02
--0.12 3.28 2.25 1.13 -0.63 3.28 1.02 1.39 S
-1314.73 3007.66 1.5 2.02 0.13 2.39 -0.89 2.91 0.39 1.89 0.64 2.76 -0.14 3.67 0.38 2.65
-0.75 2.25 0.37 3.41 -0.24 3.77 -0.39 2.78 0.25 3.52 1 1.89 1.02 2.64 -0.5 3.67
--0.63 3.38 -1.39 1.78 -0.76 2.63 0.89 2.64 0.5 2.52 -0.76 2.54 2.65 -3.04 0.87 1.89
-1.02 2.28 1.13 2.14 1 2.26 -0.37 3.14 -0.13 2.78 0 3.78 2.52 -1.39 2.02 -2.02
-1.89 -2.26 2.02 -2.14 2.5 -1.39 2.65 -1.13 1.89 -1.25 0.89 1.25 2.25 -1.88 0.5 -2.15
-2.28 -1.89 0.87 1.26 2.28 -2.65 2.5 -3.14 2.41 -3.52 1.63 -4.54 1.26 -3.9 2.26 0.13
-1.13 0.63 1.15 1.5 S
-1359.89 3050.11 -0.26 3.41 0.13 3.28 0.37 3.51 -0.75 2.91 1.39 0.13 2.38 -1.65 2.28 -2.76
-2 -3.04 2.4 -3.64 2.13 -2.9 2.39 -3.39 2.9 -2.91 2.39 -3.41 1.25 -5.04 2.26 -2.64
-1.39 -3.02 0.24 -3.41 1.65 -3.65 1.76 -4.27 1 -5.16 1.39 -3.67 1.65 -2.52 0.24 2.15 S
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--1.23 4.03 -1.26 4.04 S
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--1.64 0.75 -2.13 3.78 -1.89 3.15 -1.89 1.26 -2.28 4.67 -1.13 -2.52 -1.89 3.14 -1.75 4.28
--1.39 4.8 -0.5 3.38 -1.13 4.3 -0.87 3.52 -2.28 4.79 -1.89 4.41 0.5 2.91 1.78 0.74
-2 -4.14 1.52 1.39 1 1.63 2.52 -1.39 1.39 0.13 1.76 -1.52 1.88 -2.39 2.02 -2.02
-2.12 -0.76 1.39 2.28 1.76 -1.39 1.76 0.75 1.26 -4.53 1.65 -3.78 1.75 -2.4 0 4.16
--0.26 4.27 0.89 2.78 -0.63 4.54 -2.15 4.4 1.26 2.52 0 3.67 -0.11 3.64 -0.12 3.78
-0 4.03 -1.02 3.28 S
-1405.92 3076.82 -1.63 3.15 -2.52 5.16 -1.75 3.15 -2.15 3.64 -2.12 3.16 -2.52 2.89 -2.78 3.28
--2.38 1.13 -2.39 1.39 -2.13 0.5 -2.65 0.63 -2.38 1.25 -2.52 1.15 -1.65 1.76 -2.13 0.5
--3.28 2.38 -1.89 3.9 -1.75 3.54 -0.76 4.28 -1.63 3.77 -1.02 3.91 -0.5 3.91 -0.63 3.41
--0.24 3.28 0.5 2.26 S
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--2.39 1.52 -1.52 2.88 -0.37 3.41 0.11 3.28 -0.87 3.91 -0.13 2.89 -0.5 3.41 -2.64 3.54
-2.02 0 -2.65 3.9 2.65 -0.12 -2.15 4.14 0.13 2.4 -0.26 3.02 -0.37 3.02 -1.25 3.91 S
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--1.65 3.15 -2.02 3.14 -2.76 3.54 -2.02 2.13 -2.52 1.88 0.25 1.26 -2.28 3.41 -2.75 3.41
--2.78 3.41 -2.39 2.88 -0.24 1.76 -1.76 2.02 -1.52 0.89 -3.28 3.28 -0.24 1.26 -3.91 3.14
--1.63 1.52 -0.13 -1.78 -0.75 -0.87 1.13 -3.28 -0.76 -0.89 -1 2.91 -1.89 2.39 -1.39 2.39
--1 2.41 -2.02 1 -2.13 -1 -0.63 2.89 -2.52 1.02 -1.76 -0.63 -0.63 -0.89 -2.65 1.26
--2.64 0.99 -2.39 0.89 -3.15 1.13 -0.99 -1.63 -1.15 -1.76 -2.89 2.89 -2.52 2.38 -2.75 3.67
--2.15 3.14 -2.88 2.25 S
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--1.26 -0.63 1.76 -2.91 2.02 -2.25 1.89 -2.02 0.5 -1.89 -1.26 -0.89 -2.62 1.02 -1.15 -1.26
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--2.25 3.02 -1.78 2.65 -3.26 3.03 -2.91 2.76 S
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--1 2.14 -2.41 3.02 -2.88 2.54 -1.89 3.02 -2.02 2.65 -1.5 2.76 0 2.15 -0.13 1.52
-0.5 1.13 3.78 -2.64 3.14 -1.89 3.41 -2.52 1.63 1.39 -1.89 3.77 S
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-2.88 -0.5 -3.38 4.15 -2.39 3.27 -2.28 4.04 -3.02 3.64 -3.38 2.52 -3.15 1.65 -3.41 1.5
--3.28 1.02 -3.02 0.63 -2.02 -0.5 -1.5 -0.63 -2.26 0 -1.39 -1.02 -0.5 -1.5 -2.64 1.5
--1.39 0 -1.76 2.39 -2.02 2.28 -2.89 2.78 -3.51 3.02 -2.15 2.14 -3.41 1 -1.5 0.14
--4.66 3.14 -2.62 2.9 -2.78 1.26 -0.87 1.37 -3.77 2.15 -2.39 1.39 -1.65 2.38 2.26 -0.49
--0.5 2.64 -3.14 3.02 -4.02 2.91 -3.77 3.02 -5.04 2.64 -3.28 1 -4.91 3.04 -5.27 2.64
--4.78 2.52 -4.17 1.76 S
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--3.64 -0.11 -2.78 -0.39 -3.26 0 -3.54 0.63 -3.64 0.76 -2.88 0.5 -0.63 -0.87 -2.38 -0.26
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--3.14 0.75 -2.52 -0.13 2.28 -1.62 3.75 -1.02 -2.63 -0.11 -2.52 -0.26 S
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--4.67 1.13 -3.52 1.02 -3.91 1.26 -3.14 1.13 -2.89 0.39 -3.14 0.63 -3.39 1.13 -2.78 0.24
--3.38 1.15 -3.54 2.02 -3.02 2.13 -2.89 1.89 S
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--2.15 0.75 -1.39 1.5 -2 1.39 -2.02 0.76 -0.13 1.13 3.28 -0.5 0.24 1.13 -2.39 1.15
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--4.01 0.24 -3.65 -0.37 -3.67 -0.26 -4.27 0.76 -3.52 1.02 -1.89 1.26 -3.52 0.5 3.64 1.13
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--4.78 0.52 -0.75 0.87 3.14 0.26 2.02 1.52 2.15 1.63 2 0.89 3.65 -0.39 3.77 -0.13
-2.39 0.76 3.9 0.39 S
-1004.36 3404.86 4.78 0.11 3.14 0.65 4.16 0.24 4.64 0 4.04 -0.5 2.76 -1.02 0.63 1.15
-3.02 0.5 3.53 -0.76 6.29 1.52 2.76 1.13 1.52 1.13 1.36 1.52 1.02 1.25 1.76 1.63
-2.13 1.39 0.76 2.02 1.76 1.26 1.89 0.89 0.52 1 -4.66 0.76 -4.78 0.39 -4.91 -0.39
--3.02 -1 -4.29 0.24 -3.64 1.39 -1.13 -1.26 -2.26 -1.13 -3.64 0 -4.17 0.76 S
-1020.33 3419.73 -2.12 1 -2.89 0 0.63 -1.76 -1.25 -1.65 -2.91 -0.63 -2.89 0.26 -1.13 1.26
--2.52 0.13 -0.75 -1.76 1.39 -1.02 -1.26 -1.26 -3.54 -0.63 1.89 -1.52 2.65 -0.11 -0.63 -1.39
--3.02 -0.76 -3.77 -0.5 S
-998.2 3409.39 -2.25 -1.02 -1.76 -1.13 -3.91 0.37 -2.02 1.15 -3.28 -0.52 -3.76 0.26 1.37 1.89
--3.77 -0.76 -3.39 -0.24 -3.41 0 -3.64 1 -2.39 1.26 -1.5 1.52 -2.28 -1.52 -3.9 -0.37
--3.88 -0.76 -3.54 -0.89 -3.52 -0.87 -3.02 0 -3.41 -1.02 -3.75 -0.37 -3.14 -0.76 -4.67 0.13
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--4.14 0.5 -3.27 -0.87 -1.5 -0.52 S
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--2.28 -0.63 -3.52 0.37 -0.89 1.65 -2.89 0.75 -4.14 0.88 -3.78 0.26 -0.36 -1.65 S
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-4.91 0 4.14 0.39 2.02 -1.52 2.76 -1.12 3.53 -1.13 3.78 -0.89 2.76 -1.26 2.78 -1.26 S
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-2.39 -0.89 2.65 -0.76 S
-990.15 3361.13 -1.26 -1 0.76 -1.63 1.89 -0.89 0.37 -1.39 -1.76 -1.62 1.89 -1.78 3.15 -1.5
-1.75 -2.28 2.02 -1.75 2.02 -1.65 2.52 -2 0.86 1.37 2.28 -1.63 2 0.13 1.25 1.13
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--1.52 -2.38 0.89 -2.28 0.74 -2.89 1.78 -2.28 2.39 0.13 1.5 1 1.89 -1.63 1.26 -2.78
-0.26 -2.15 -2.91 0 1.15 -1.89 -0.12 -1.75 1.25 -1.39 1.89 -1.49 -3.28 -1.26 S
-1026.75 3308.12 -2.64 0.5 0.26 -1.52 S
-1024.37 3307.09 1.39 -0.63 0.99 1.65 S
-1026.75 3308.12 2.65 0.37 0.5 -1.39 -0.63 -1.13 -0.63 -1.25 2.15 -0.89 1.26 0.89 1.88 -1.76
-1.63 -1.78 0.37 -1.5 -3.02 1 -1.63 1.65 -3.54 1.75 -2.88 1.63 -3.65 1.78 -2.88 1.26
--3.41 -0.13 -2.65 -0.63 -1.63 -1.26 -0.5 -1.52 0.13 -1.63 0.63 -1.52 1.75 -0.37 0.5 -1.52
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-0.24 -2.25 2.25 0.24 1.39 -3.15 -2.26 0.63 1.76 -2.78 0 -1.63 2.15 -1.64 1 -2
-1.39 -2.64 1.89 -1.89 2 -1.65 2.28 -0.76 2.88 -0.12 0 -2.26 0.5 -2.28 S
-1032.16 3270.05 -0.11 -2.38 -0.39 -2.13 4.04 -0.76 3.14 -1.25 1.89 1.37 3.02 0 0.37 -2.13
--3.14 -0.39 -2.26 -0.74 -0.63 -1.26 -2.02 -0.39 1.13 -1.63 2.91 0.87 0.63 -1.26 -2.02 -0.37
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-2.64 -0.13 2.89 -0.63 2.02 -1.88 2.89 -1.78 3.64 -1.37 2.02 2 0.63 -2.13 2.89 -1.65
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--1.76 2.39 -2.52 1.39 S
-1059.09 3240.84 -2.02 1.88 -3.38 -0.12 -2.9 1.63 -3.39 1.91 S
-1047.39 3246.14 -2.91 1.63 -3.02 1.52 -3.26 0.11 -2.02 2.02 -2.15 1.78 -2 0.87 -2.65 -0.99
--1.26 1.13 -2.38 0.37 0.11 -1.75 2.02 -1.89 1.88 -2.02 2.78 -1.76 1.89 -1.88 0.63 -2.65
-2.26 -1.63 2.78 -0.76 2 -1.89 1.76 -1.15 2.02 0.63 3.41 -1.13 2.13 0.26 2.28 -2.38
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--3.64 0.39 0.99 -1.91 2.15 -0.24 2.52 0.24 2.26 -0.87 2.38 -0.5 0.52 -1.79 -0.52 -1.12
-1.79 -1.26 -1.52 -0.63 -2.88 2.29 -0.52 -1.79 0.26 -2.38 S
-1037.33 3220.68 -2.02 -0.89 -1.12 -1.5 1 -1.78 -2.76 0.39 -2.52 2.02 -0.26 -2.14 -0.37 -2.02
--1 -1.89 -0.26 -2.02 -0.89 -2.13 -0.87 -1.78 2.38 -2.52 -0.5 -2.02 -1.88 -1 -2.26 1
--2.28 -0.24 -0.63 2.38 1.76 1.63 -2.39 1.39 -2.02 0.5 -2.12 -1.12 -2.89 -0.37 3.25 -1.02
-2.28 -2.65 1.26 -2.52 1.88 -0.11 2 -2.28 0 -2.15 -2 0 -2.4 -0.5 -0.11 -2.25
--1.15 -2.15 -0.63 -2.25 2.41 -1.52 2.88 -1.88 -2.88 -0.76 -2.41 0 -2.88 0.37 -2.13 -0.37
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--1.12 1.99 -1.5 2.41 S
-1005.38 3186.68 -3.54 1.26 -2.52 0.5 -2.63 2.02 2.89 -1.02 3.02 0.13 2.88 -0.37 S
-1005.49 3189.2 2.28 0.37 2.39 0.5 2.75 0.13 2.28 1.39 1.26 2.28 0.24 2.13 -1.75 2.28
--2.13 1.63 -3.04 0.76 -2.75 0.26 -3.02 0.74 -3.15 0.76 -3.02 0.26 -3.02 -0.26 -3.04 -0.63
--1 1.65 -2.39 0.13 -1.13 -1.39 -2.65 -0.39 -3.27 0.89 2.64 0.24 1.26 2.41 -2.65 0.63
--2.62 0.5 -2.91 0 -0.37 -3.28 -1.52 1.89 -0.99 -2.15 -1.26 2.91 -1.26 -1.26 -0.26 -1.89
--2.39 0.76 -1.39 -1.65 -0.74 -2.52 -2.39 -1.39 -2.52 -0.5 -0.89 -2.88 -2.02 -1.15 0.5 -1.76
-1.39 -0.13 -1.5 -2.02 -0.63 1.65 S
-958.83 3191.08 -1.15 -1.52 -0.11 2.65 -1.39 -2.02 -1.63 -1.49 1.63 -1.15 -2.78 -1.26 -1.26 -2.39
-2.02 2.14 2.15 0.63 2.52 0.87 -1.89 -3.02 -0.26 -2.15 -1.39 -2.39 -0.62 -2.38 -0.37 -2.15
--0.49 -2.39 -0.5 -2.64 -1.89 -2.02 -1.15 -3.14 -1.13 -2.39 -1.26 -2.28 -1.75 1.13 -0.76 -2.25
--1.13 -1.89 -2.75 -0.5 -1.52 -2.41 -1.75 -1.76 -1.89 -2.02 1 -1.63 -1 -1.78 0.63 -2.26
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-2.64 -1.15 2.78 -0.24 2.39 1.5 1.37 1.89 2.02 2.41 1.52 0.13 0.75 1.89 1.63 -1.26
-1.39 -3.04 1.5 -2.52 S
-959.07 3132.12 1.52 -2.88 1.5 -2.65 2.41 -2.02 -0.52 -1.89 1.52 -2.02 0.26 -1.76 2.26 0.24
-1.89 0.13 S
-969.9 3119.27 -0.62 1.75 1.25 2.52 2.13 0.26 1.89 0.26 0.63 3.28 -0.24 3.14 0 2.26
--0.63 2.64 0 1.89 1.89 2.15 1.89 1.63 -1.26 0.75 1.37 1.52 0.26 1.49 -1.13 1.65
--2.52 1.39 -2.39 1.39 -0.76 2.13 -0.26 2.78 -0.5 2.65 0.5 1.39 1.02 2.88 1.5 2.15
-1.39 1.52 1.63 1.76 0.26 1.88 1.13 2.02 -2.12 1 0.63 1.89 -0.62 1.26 1 1.15
-0.37 1.89 2.02 0 1.52 0.37 1.49 0.76 2.65 -1.13 1.13 -2.52 -1.26 -1.26 -0.36 -2.91
--1.26 -2.52 S
-983.48 3168.4 -1.26 -3.01 -1.39 -2.65 -0.13 -2.78 1.02 -2.52 2.13 -2.39 -0.13 -2.78 0.63 -1.75
-2.52 -0.89 1.89 -1 2.91 -0.26 2.52 1 2.25 1.52 2.15 1.52 2.25 1.39 3.15 0.87
-3.02 -1.5 1.63 1 2.28 -1.89 -3.28 0.13 -1.52 -2.41 -0.63 -1.5 -3.14 -0.89 -2.89 0.26
--2.52 -1.12 -2.12 -0.89 -1.52 -1.75 0.76 -2.29 1.5 -2.02 1.89 0 1.02 -2.64 0.87 -2.52
--1 -1.75 -1.89 0.13 -1.62 1.5 -2.02 1.02 -2.15 -0.89 -0.24 -2.88 -0.5 -1.89 1 -3.14
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--2.52 -1.39 -1.89 -2.02 S
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--2.13 -0.76 -1.39 -1 -1.52 -1.52 S
-961.46 3110.2 -2 -0.24 0.37 1.89 -3.39 0.99 -0.13 1.39 -2.15 1.13 0.76 2.78 0.99 2.88
-2.02 1.15 -0.26 1.76 -1.87 -0.26 -0.26 1.78 0.37 2.39 -0.24 1.76 -2.02 -0.63 -1.13 -1.89
--2.28 -0.76 -1.26 -1.39 -0.24 -1.75 0.24 -2.78 0.52 -2.12 1.89 -1.26 0.37 -2.78 1.26 -1.64
--1 -1 1.37 -1.26 -1.37 -1.52 0 -1.76 -1.89 0.76 -2.38 -0.13 -1.02 -1.39 -3.14 -0.13
--2.02 -1.12 0.13 -2.26 1.65 -0.39 0 -1.26 -1.39 -1.5 -1.52 0.87 -0.24 2.78 S
-940.21 3103.28 -1.13 -0.63 -0.39 -2.15 -0.87 -1.89 -1.15 -1.89 -1.37 -1.89 -2.14 -0.89 -2.39 -1.5
--2.15 -0.89 -0.5 -1.88 -0.23 -2.28 -1.65 -0.87 -1.89 -0.5 -1.5 -0.89 -0.63 -2.28 -2.28 0.39
--1.89 -0.39 -0.87 2.28 -2.28 0 1.26 -2.64 0.52 -3.28 -2.28 0 -2.52 -0.37 -1.26 1.89
--2.52 -0.39 -2 -0.87 -2.28 -0.39 0.13 -2.76 1.65 -1.02 1.87 0 2.28 -1.5 2.64 -0.52
-0.63 -0.87 1.5 -1.89 -0.37 -1.39 1 -1.39 2.02 -1.39 1 -2.38 -0.37 -3.15 -0.39 -3.17
--0.37 -2.39 -0.75 -3.14 -1.13 -1.39 -2.12 -0.5 -2.41 0.5 -3.38 0.63 -3.65 -0.87 -2.64 1
--3.15 0.63 -3.14 -0.26 S
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-0.11 -1.91 0.52 -2.76 -0.62 -2.41 -0.89 -2.62 -0.76 -3.28 S
-882.83 3031.1 -1.62 -1.79 -0.63 -2.75 1 -1.89 1.75 -0.13 -0.62 -2.78 -0.11 -2.78 -1.02 -2.39
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--3.52 -0.5 -2.65 1.13 -2.25 1.15 -1.25 1.26 -0.76 2.39 -1.39 2.14 -2.25 1.13 S
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--2.02 0.64 -0.87 1.75 -2.02 0.63 -1.75 1.13 -1.13 1.65 -1.89 1.63 -1.89 2.02 -0.5 3.27
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--0.39 -1.63 2.52 0.63 3.53 -1.76 2.52 -0.39 2.76 2.15 0.13 2.39 2.65 0.26 3.64 -0.63
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--2.15 -1 S
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--2.88 0.76 -2.89 1.13 -2.78 0.13 -3.64 0.13 -3.14 -0.26 -2.52 0.76 -2.88 1.13 -1 2.41
--1.89 -0.76 -2.02 0.87 -0.62 2.28 1.39 1.52 1.76 1.99 1 2.54 -0.63 2.26 -1.63 0.76
--1.13 3.28 1.37 1 S
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--1.88 -0.63 -2.29 0 -2.25 -1 S
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--1.75 -2.26 -2.15 -1.75 -0.24 -1.89 -1.39 -2.28 -1.64 -1.26 -0.37 -4.66 1 -2.02 S
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-1.75 -2.52 1.26 -2.52 S
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-2.9 -1.13 2.26 -0.5 2.88 1.76 3.41 0.39 2.39 1.75 S
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-2.38 1.37 2.91 0.89 2.38 0.5 2.39 1.39 3.28 1.75 3.78 0.13 1.36 1.88 3.27 0.89
-2.89 0.5 2.78 0.13 3.38 0.5 3.28 0 2.78 -0.87 2.89 -2.28 1.52 -3.64 1 -3.78
-3.28 -1.78 2.88 0.13 2.78 0.49 2.89 0.63 2.75 0.13 S
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--0.37 -3.28 -0.89 -2.38 -1.39 -2.39 1.89 -0.76 -1.39 -2.52 0 -2.78 S
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-0.76 2.91 -2.65 -0.26 -3.28 0.26 -0.11 1.89 -1.52 1.76 -2.64 0.26 -1.89 -1.02 S
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-1.75 2.75 0.63 3.41 0.88 2.15 -1.5 2.65 -2.78 0.5 -2.75 -0.37 -3.14 -1.02 -3.15 -2.38
--0.76 -3.54 1 -2.25 -0.37 -2.39 -0.24 -3.04 S
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--1.39 2.65 -1.39 3.14 0.5 2.02 -2.25 1.62 -2.39 1.52 1.39 2.64 -1.02 3.15 -0.86 3.28
--1.52 3.14 -0.63 3.78 -1.25 -4.04 1.02 -2.76 -0.89 -2.91 1.39 -3.15 -0.39 -2.52 S
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--0.13 3.77 -1.76 2.13 -0.24 3.28 0.13 3.41 1 3.41 -1.63 3.14 -0.39 2.89 -0.36 3.66
--2.28 1.63 -0.5 -1.5 1.26 -5.55 0 -1 0.76 -4.17 -2.02 -2.65 S
-1037.07 3057.79 2.41 -1.89 1.26 -2.12 2.63 -1.39 2.64 -0.26 S
-1046 3052.13 2.89 0.13 2.52 1.13 2.52 0.13 1.65 1.89 1.49 1.88 1.52 1.89 2.26 1.65
-2.52 0.24 2.65 0.76 1.76 1 2.02 -1.5 2.63 0.76 2.15 -1.89 1.63 0.5 2.52 -0.76
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--0.5 1.89 -1.76 1.5 -1.64 2.02 -1.39 0.63 -3.13 0.39 -2.41 0.74 -1.89 0.89 -2.89 1.65
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-0.74 2.78 2.02 1.65 S
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--0.89 -2.14 -2 -1.52 1.37 -2.63 0 -2.02 -1.63 -1.26 -0.76 -2.15 0.76 -2.28 0.5 -2.89
--2.12 -1.02 0.63 -2.76 -1.15 -2.28 S
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-0.76 2.91 -1.52 0.5 -1.5 1.02 1.75 0.63 1.13 2.39 1.89 1.26 -1.63 0.37 -1.75 -1.12
--2.78 -1.39 -1.89 -2.65 -2.52 -1.37 -1.76 -2.02 -0.76 -2.41 -1.76 -1.49 S
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-2.14 -0.76 S
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-0.61 -2.02 -1.5 -0.62 1.89 -3.15 1.75 -2.52 1.63 -2.64 2.41 0 2.75 0.63 1.26 -1.15
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--0.87 3.54 -1.76 -0.26 -1.89 2.02 -1.02 2.39 -2.65 -1.39 -1.26 1.65 -0.62 3.14 2.52 0.13
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--2.65 2.15 -1.63 1.99 -0.13 2.91 -1.39 1 -2.26 -1.25 -2.78 1.02 -2.13 2.39 -3.02 1.89
--2.41 -0.13 -0.63 1.52 S
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--1.75 -0.37 -1.02 -3.4 -1.89 -1.52 -1.37 -1.76 1 -1.12 -1.39 -1.26 0.26 -2.15 -2.78 -0.12
-0.49 -2.52 0.39 -3.15 0.13 -2.78 S
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--0.24 3.66 -1.89 2.65 1 1.26 0 1.88 -2.26 1 -3.14 1.13 -1 1.26 -0.62 2.78
--0.39 2.39 -0.87 -2.63 -1.39 0.37 -1.25 -2.14 1.25 -1.63 -1.52 0.13 0.75 -2.52 S
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-2.52 1.39 0.24 1.89 S
-1182.88 3164.5 2.65 0.63 1 2.28 -0.74 2.88 -0.89 -1.39 0 -1.75 -1.52 -0.89 -0.5 -1.76 S
-1182.88 3164.5 -1.5 -0.76 -2.02 -1.5 -1.39 -2.41 -1.39 -0.87 0.26 -3.04 0.13 -2.38 2.13 -3.41 S
-1182.51 3258.22 1.63 2.02 -1.14 2.88 -1.25 2.52 -3.28 2.41 -2.39 3.14 -1.39 2.89 -2.38 2.28
--3.52 3.28 -3.64 2.39 -3.41 1.25 -3.88 1.76 -3.54 1.78 -0.99 -0.89 1.89 -1.26 2.25 -0.89
-2.91 -1.89 3.02 -1.89 2.89 -1.89 S
-1166.28 3278.12 3.02 -2.78 3.02 -2.75 2.28 -2.02 1.75 -2.28 2.26 -2.02 2.26 -2.26 0.52 -2.52
-1.13 -3.28 S
-1007.38 3158.57 2.39 -1.26 1.89 -1.89 1.52 -1.89 1.13 0.37 0 1.52 2.15 0.63 0 1.89
--0.89 1.65 -1.76 1.5 -2.26 0.26 -1.65 0.89 -1.75 -0.52 -1 -1.75 0.24 -1.39 S
-1017.32 3165.75 1.52 -1 2.25 -0.26 1.13 -2.02 1.39 0.5 0.5 1.15 -1 1.75 -1.75 0.76
--1.65 1.39 -1 2.13 -2.13 0.76 -2.28 0.13 1.52 -1.02 1.37 0.13 1.02 -1.62 -1.63 -0.63
-0.74 -2.15 S
-1159.48 2701.41 -0.37 -2.39 0 -2.78 0.87 -2.26 -0.24 -3.91 -0.14 -3.28 1.63 -2.65 1.63 -1.63
-1.89 -1.15 S
-1164.75 2681.38 2.65 0.76 2.52 1.65 2.64 1.39 2.02 -0.39 2.38 3.14 1.26 2.65 1.37 3.02
-1.26 2.02 0.89 2.52 0.76 2.65 0.87 2.4 1.25 2.65 1.26 2.62 1.26 2.52 0.75 2.64
-1.26 2.65 1.26 3.04 1.26 3.14 1.76 3.78 0.76 3.02 0.89 3.54 0.24 2.52 1.52 1.76
-0.63 2.64 0.11 4.91 1.89 -2.13 2.02 3.39 -0.24 2.91 -0.39 4.4 -1.13 3.28 -0.26 3.41
--1.12 2.89 -1.5 2.64 -2.39 -3.02 -0.13 -3.01 -0.49 -2.55 -2.29 -1.37 -2.64 -1.02 0.26 -2.89
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--2.13 -0.37 -1.76 -4.67 S
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--1.12 -2.52 -2.15 -2.65 -2.25 -3.67 S
-1221.38 2716.04 0.39 -1.89 2.13 0.37 0.5 1 -1 1.39 -2.02 -0.87 S
-1232.57 2721.07 2.15 0.37 0.24 2.02 -1 0.89 -1.39 -3.28 S
-1204.14 2919.86 1.75 -0.37 2.02 0.63 2.02 2.39 -2.02 -0.26 -2.52 -0.24 -1.26 -2.15 S
-1208.42 2550.76 -0.76 -2.65 -2.75 -2.39 2.75 0.87 0.39 -1 1.63 1.39 1.39 -0.13 2.13 2.02
--2.39 -0.39 -1.39 -0.37 0 1.5 0.26 2.02 -1.26 -0.87 S
-1360.53 3024.42 2 -5.43 1.78 -5.79 S
-1397 2957.4 2.52 -0.76 S
-1404.17 2950.58 1.65 -1.62 2.13 -1.88 S
-1407.95 2947.07 -0.76 3.27 -2.52 2.39 -0.5 -2.15 S
-1413.11 2936.74 1 -3.91 1.26 -1.25 1.02 1.75 -2.52 4.8 -0.76 -1.39 S
-1327.43 2948.83 1.13 -3.91 1.13 -2.65 1.89 -4.04 1.64 -2.25 1.76 1.13 2.02 2.64 1 3.41
--0.26 3.91 -1.13 3.9 -2.12 2.02 -2.02 2.75 -2.25 2.41 -2.28 2.52 -3.02 0.63 1.52 -2.28
--0.13 -3.52 0.76 -3.54 0.37 -3.14 S
-1372.09 3127.71 1.88 -2.64 2.13 -2.39 1.79 0.63 0.63 1.89 -0.62 3.91 -1.16 3.78 -2.26 4.04
--1.25 3.77 -1.63 2.15 -0.63 -2.28 -0.5 -2.39 -0.13 -2.39 1.13 -4.54 0.63 -3.54 S
-1354.47 3211.24 2.91 -2.91 3.52 -2.65 0.76 0.89 2.52 -1.65 -3.54 4.43 S
-1360.63 3209.36 -2.75 4.14 -3.02 3.91 -3.64 4.16 -3.28 4.15 -3.15 2.64 -0.75 -0.89 1.89 -4.01
-2.78 -4.04 2.63 -3.64 3.15 -4.54 S
-1278.86 3304.71 2.78 -0.39 -1 2.15 -2.52 1.52 1.63 0.23 2.89 -1.5 2.65 -2.65 2.78 -1.39
-2.88 -1.64 -0.26 2.54 -3.88 4.27 -3.66 2.25 -4.14 3.04 -3.52 2.65 -2.25 0.11 -2.65 0.89
-1.39 -2.52 -1.25 -0.13 1.88 -2.78 3.25 -3.25 3.02 -3.41 S
-1270.45 3319.45 3.02 -0.76 -0.24 2.15 -2.78 1.89 -2.26 1.63 -2.78 3.04 0.76 0.99 -3.14 2.29
--2.89 2.38 -2.02 0.5 0.5 -2.02 2.15 -2.76 3.01 -2.28 1 -2.39 2.78 -1.76 2.89 -2.91 S
-1267.79 3315.54 2.91 -1.39 S
-1270.71 3314.15 -2.15 3.28 -0.89 2.28 -3.13 2.64 -2.41 3.25 -2.89 3.41 -1.89 2.38 -3.52 3.54
--0.89 1.89 -1.89 3.02 4.04 -2.75 2.75 -1.15 2.15 0.13 -0.62 1.52 -4.91 3.51 -4.91 4.04
--1.52 -0.5 -3.14 2.02 1.02 1.63 -3.15 4.16 -5.8 4.04 2.76 -0.26 -5.64 2.65 -2.02 2.52
--2.78 1.75 4.41 -1.49 -4.27 3.38 -2.65 1.02 -3.14 2.02 -2.13 -0.13 -4.27 1.39 -2.78 1.63
--4.28 1.13 -3.02 0.39 -2.39 1 -1.76 1.88 -2.78 0.52 -3.64 1.89 -4.28 1 -2.64 -0.37
--1.26 -1.02 -2.39 0 -2.52 0.63 1.39 -2.39 2.52 -0.63 -1.39 1.39 1.65 -0.13 1.76 -1.76
--0.26 -1.25 4.54 -1.89 S
-1193.71 3371.36 2.25 -0.39 2.78 -0.37 3.39 -0.63 3.41 -1.26 4.28 -2.02 4.01 -1.52 3.65 -2.78
-3.77 -1.89 3.28 -2.39 3.52 -3.14 3.78 -3.28 -2.26 0.75 -3.41 1.52 3.14 -2.41 3.28 -1.26
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-1.52 -2.52 4.14 -3.28 3.64 -3.41 2.89 -2.78 2.52 -3.02 S
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-3.91 1.25 S
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-3.02 -0.63 3.54 -0.87 2.89 -0.63 S
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--2.78 1.78 -2.39 1.89 -1.36 2.26 -1.02 2.28 S
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--1 -1.02 0.87 -0.99 S
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--1.13 -0.11 -0.62 -2.02 -0.89 0.74 -1.52 0.13 -0.36 -2.64 S
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--0.86 1.89 -2.15 0.88 -1.52 0 -1.12 -1.37 -0.87 0.88 1.13 1.39 S
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-1 -1.89 2.64 0.76 2.65 0.87 -1.26 -2.25 1.37 -1.76 1.65 -0.13 -1.25 -2.28 0 -2.25
--2.15 -0.37 S
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--1.63 -2.28 -2.02 -1.63 -2.26 -1.76 S
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--2.02 -1.26 1.52 -1.89 1.76 -0.11 -2.02 -2.54 -1.26 -2.63 -2.12 0.11 S
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--0.89 -1.89 -2.02 -1.02 S
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-0.5 2.39 0.13 2.38 -0.26 2.28 -0.5 2.26 -2.14 2.28 -1.89 -2.02 -1.37 -0.63 -1.15 0.5 S
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--1.76 -1.63 S
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--2.02 -1.26 -0.63 -2.02 S
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--0.39 1.39 -2.52 -0.63 -2.02 0.39 -2.12 -1.02 -0.5 0.89 -2.78 0 0.13 -2.39 S
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--2.26 -1.5 -2.02 -1.13 -1.65 -0.89 -0.74 -1.26 -2.14 -1.02 S
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-0.5 -0.5 0.39 -0.26 S
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--2.02 -3.38 -2.14 -3.41 -1.39 -2.14 -1.37 -2.12 -0.76 -0.52 -0.76 -0.63 S
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-2.26 3.28 2.15 3.28 -1.78 -3.41 -1.89 -3.52 -1.37 -2.52 -1.52 -2.54 -1.89 -2.63 -1.89 -2.64
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--0.89 -1.5 -0.89 -1.52 -1.62 -2.52 -1.76 -2.52 -1.39 -2.02 -1.25 -1.89 1.25 0.87 S
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-2.64 3.02 2.63 3.04 2.91 3.14 2.75 3.28 3.02 3.52 3.02 3.54 2.65 2.89 2.52 2.9 S
-1424.04 2544.33 1.65 1.76 1.75 1.89 3.26 4.03 3.28 4.14 1.76 2.29 1.88 2.25 1.76 2.41
-1.52 1.89 1.52 2.02 S
-1442.43 2567.01 1.63 2.13 1.39 1.76 1.37 1.78 1.39 1.75 1.89 1.89 1.52 2.02 1.5 2.14
-1.52 2.02 1.5 1.99 1.39 2.15 1.52 2.02 1.5 2.39 1.64 2.4 1.5 2.26 1.89 3.02
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-1.63 4.02 3.52 9.34 1.78 4.77 1.13 3.28 1.25 3.4 1.13 3.28 S
-1520.29 2713.89 1.63 4.9 1.52 5.06 1.5 4.9 1.15 3.54 2 7.29 1.15 4.3 0.99 4.41
-1.13 4.28 1 4.27 0.89 4.17 1 4.17 0.13 1.5 0.25 1.52 0.13 1.52 0.5 2.88
-0.63 2.78 0.5 2.75 1.89 9.84 0.86 3.9 1.52 7.81 0.26 2.02 0.11 2.02 0.26 1.89
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-0.13 1.75 1 9.07 -0.12 2.41 -0.11 2.39 S
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--0.13 3.02 0 3.15 0.26 5.16 0.11 5.3 0 9.7 -0.24 2.89 -0.13 2.91 -0.37 3.52
--0.26 3.54 -0.13 5.66 -0.24 5.66 -0.26 4.54 -0.37 4.41 -0.26 4.8 -0.37 4.79 -0.52 2.25
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--1.02 4.66 -0.5 1.02 -0.5 0.88 0.37 -4.54 S
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--0.26 1.5 -0.36 1.89 -0.37 2.02 -1.52 -2.52 -0.13 3.67 -0.24 3.64 -0.39 0.63 -0.37 0.63 S
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--0.11 3.78 -0.26 3.77 0.5 1.26 0.5 1.13 -0.24 4.04 -0.26 3.91 0 7.68 -0.62 1.52
--0.76 1.39 0.13 -4.66 0 -4.67 -1 5.04 -0.39 -2.52 -0.37 -2.38 -0.62 0 -0.63 -0.13 S
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-0.63 -2.14 0.13 -3.91 0 -4.01 -0.63 -1.26 -0.76 -1.39 -1.25 -2.52 -0.39 -3.91 -0.5 -3.91
--0.13 -3.28 -0.11 -3.28 0.38 -2.52 0.26 -2.39 S
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-0.5 3.41 0.37 3.41 0.52 3.28 0.37 3.41 0.37 3.25 0.52 4.17 S
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-2.39 3.04 2.39 3.02 S
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-3.28 3.91 3.41 3.78 3.39 3.91 3.41 4.01 3.64 3.91 3.65 4.03 S
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--4.23 -5.64 P
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--4.28 3.84 2.52 6.41 2.65 6.36 -4.11 3.97 -3.99 4.05 -3.91 4.15 2.91 6.38 -3.73 4.28
-3.06 6.33 -3.56 4.39 -3.47 4.45 -3.34 4.55 -3.26 4.64 3.43 6.38 -3.04 4.77 -2.95 4.86 p f*
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-1.41 6.4 1.52 6.38 1.58 6.36 -5.05 3.14 1.71 6.36 -4.95 3.25 -4.9 3.32 -4.8 3.39
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-5.64 -2.54 -1.45 -5.88 5.73 -2.43 -1.34 -5.88 5.82 -2.37 -1.24 -5.86 3.84 -1.5 0 -315.62
-0.22 -0.87 0.71 -0.62 0.08 0.61 -1.02 0.89 0 315.62 2.06 -0.78 -1.15 -5.86 3.69 -1.36
-0 -328.56 1 -3.56 2.99 -5.86 3.04 -5.86 0.04 -0.13 2.59 -5.75 6.1 -5.52 1.17 -0.8
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-6.62 -1.41 6.67 -1.39 -0.26 -5.6 6.7 -1.3 6.73 -1.28 6.75 -1.24 -0.18 -5.53 6.8 -1.17
--0.13 -5.51 6.81 -1.11 6.86 -1.09 -0.07 -5.45 -0.02 -5.46 0 -5.45 0.07 -5.43 0.09 -5.45
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-0.39 -5.45 0.43 -5.45 0.48 -5.42 0.54 -5.43 -6.68 0.87 0.59 -5.45 0.67 -5.41 0.69 -5.42
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-1.43 -5.52 -6.12 0.66 1.54 -5.52 -6.08 0.63 1.67 -5.54 -5.99 0.59 1.76 -5.54 1.85 -5.53
--5.86 0.52 1.97 -5.55 -5.8 0.5 -11.45 1 2.19 -5.64 2.28 -5.64 2.36 -5.6 2.43 -5.57
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--4.88 5.63 -4.78 5.7 -4.64 5.76 -4.54 5.79 -4.41 5.86 -4.29 5.93 4.29 0.19 -4.1 5.92
-4.45 0.14 -3.91 5.9 -3.8 5.95 -3.69 6.02 -4.67 0.02 -3.64 6.08 -3.54 6.14 -3.41 6.16
--3.3 6.18 -3.19 6.25 -3.08 6.25 5.03 -0.34 -2.9 6.23 -2.8 6.25 5.2 -0.48 -2.64 6.23
--2.54 6.25 -2.43 6.27 -2.32 6.32 -2.23 6.31 -2.11 6.34 -2.02 6.34 5.55 -0.91 -1.87 6.31
--1.78 6.34 P
--1.7 6.34 -1.56 6.34 -1.5 6.36 -1.37 6.38 -1.28 6.38 -1.2 6.38 -1.11 6.4 -0.98 6.38
--5.8 1.5 -0.93 6.46 -5.75 1.59 -0.82 6.5 -5.73 1.68 -0.74 6.57 -5.68 1.76 -0.66 6.64
--5.64 1.85 -0.55 6.68 -0.43 6.71 -5.6 1.99 -0.32 6.75 -0.24 6.73 -5.53 2.17 -0.13 6.79
--0.02 6.77 0.09 6.77 0.19 6.74 -5.44 2.46 0.3 6.79 p f*
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--4.17 3.61 -4.08 3.69 -3.99 3.75 f*
-2113.76 3027.5 -4.32 3.52 3 5.77 4.23 -3.54 -2.91 -5.75 f*
-2115.37 3018.25 -4.45 3.43 2.84 5.82 4.38 -3.47 4.46 -3.38 -2.73 -5.77 -4.51 3.38 f*
-0 155 255 rG
-2115.56 3208.7 -1.56 2.13 1.11 2.32 5.36 7.97 0.04 0.06 5.64 6.57 5.8 6.3 0.43 0.54
--0.39 3.38 -0.37 1.15 -2.3 3.54 0.57 5.36 0.87 5.47 0.91 5.44 -0.02 4.86 3.25 6.64
-1.67 1.87 7.16 7.46 0.26 0.24 2.8 2.11 0 -14.78 -0.3 -0.09 -0.65 -0.41 -1.89 -5.75
-1.54 0.33 5.88 1.61 2.45 3.34 -1.76 0.91 -5.27 0.07 0 14.78 4.12 3.11 0.5 0.5
-0 -11.39 -3.45 -0.05 -0.57 -1.97 0.13 0 3.88 2.02 0 11.39 4.51 4.38 2.84 2.69
-7.47 5.64 2.63 1.52 0.8 0.41 0 -7.62 -0.98 -1.61 0.42 -0.08 0.91 0.63 -0.35 1.06
-0 7.62 3.41 1.78 1.22 -0.13 4.04 -0.41 3.08 -1.24 1.29 -1.78 1.08 -1.56 -2.73 -5.23
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-7.44 4.25 2.26 2.04 4.43 4.97 3.67 2.64 3.37 2.73 6.2 4.3 0.91 0.85 8.22 4.66
-2.43 0.7 5.42 2.47 7.6 2.5 0.28 0.15 8.62 3.93 0.74 0.28 8.31 3.58 0.52 0.22
-8.64 3.39 0.17 0.09 6.32 3.23 2.63 -0.12 1.56 1.63 3.76 1.43 3.69 -0.35 2.91 2.84
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-1.24 2.39 5.93 5.01 1.25 2.08 4.76 2.97 6.14 5.55 3.28 3.26 3.1 3.88 4.23 3.8
-2.24 1.86 6.36 3.64 3.61 -0.21 -1.2 -4.5 -1.07 -4.46 -0.34 -4.19 -2.17 -5.04 -0.07 -0.13
--2.84 -5.6 -2.78 -5.1 -0.98 -1.13 -4.17 -6.71 -0.07 -1.69 0.16 -2.69 0.17 -4.41 -4.17 -6.66
--0.5 -0.89 -1.43 -5.69 -0.15 -4.92 1.56 -3.75 0 -4.84 -0.02 -0.13 -0.02 -5.05 0.65 -4.64
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-2.85 -3.17 3.34 -2.64 4.27 -1.63 2.54 -0.48 2.91 0.21 4.64 -1.12 2.86 0.21 3.45 0.61
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--1.61 0.17 -5.95 -0.43 -3.69 2.39 -3.39 2.71 -2.3 0.87 -1.54 1.33 -0.82 -0.96 -5.08 0.78
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--2.61 2.41 -0.24 0.96 -0.65 4.36 -1.15 4.93 -1.82 4.19 -4.45 1.65 -4.21 1.93 -0.98 4.88
-2.06 5.75 P
-0.22 1.89 -1.37 0.2 -5.64 -0.72 -2.13 1.65 -1.39 0.91 -2.76 3.19 -1.86 3.93 -1.76 3.99
--2.19 3.59 -0.09 5.23 0.24 4.14 0.21 1.37 -1.24 4.21 -1.23 3.36 -0.24 0.66 0 0.48
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--5.62 -3.75 -5.36 -4.99 -4.41 2.06 -1.97 4 -0.91 1.49 p f*
-2 239 204 rG
-2120.9 3215.5 -0.41 0.28 0.34 0.58 5.49 7.14 3.73 4.43 1.93 2.5 5.82 7.14 0.46 0.82
-5.66 7.9 1.26 1.24 4.99 5.62 5.88 5.21 0.48 0.79 4.01 6.11 0.7 4.84 3.63 5.21
-0.63 1.28 6.94 6.97 6.21 2.28 5.82 0.67 5.84 0.59 0.24 0.07 5.95 1.75 1.56 1.02
-6.14 5.83 0.31 0.35 0.15 1.06 -0.37 2.8 -1.11 3.61 5.97 5.68 0.11 0.05 5.92 5.42
-3.89 3.63 1.71 1.56 6.8 5.21 1.21 0.85 4.08 3.88 6.01 3.43 7.05 1.98 0.61 0.28
-7.68 3.37 2.78 1.3 6.09 2.78 3.67 1.39 5.1 2.19 3.55 1.54 5.64 2.22 2.34 1.19
-7.42 2.78 1.15 0.31 8.05 2.63 0.3 0.15 4.05 2.99 3.62 3 1.02 -0.15 -3.71 -2.97
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--4.64 -4.55 -2.3 -1.91 -4.25 -3.19 -5.54 -5.1 -1.74 -4.28 -1.39 -4.19 -1.22 -1.37 -2.73 -3.6
--2.78 -4.73 -4.29 -5.34 -0.76 -0.84 -6.88 -4.25 -6.44 -2.97 -5.52 0.67 -0.12 0.04 -4.93 -0.35
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--1.04 -1.37 1.15 -0.07 6.01 0.3 4.04 2.5 1.71 1 1.84 1.45 3.87 3.08 5.8 4.02
-5.73 7.18 0.41 0.76 5.51 5.47 5.99 3.62 6.04 3.21 3.91 4.13 2.34 2.4 4.45 5.21
-2.43 5.04 0.67 0.58 5.84 4.04 6.53 4.26 1.58 1.61 5.36 4.08 6.36 2.43 5.95 3.64
-0.87 0.45 0.89 0.11 3.53 -2.52 0.7 -0.74 1.74 -2.1 -0.61 -3.82 -0.52 -3.82 -0.8 -3.93
--2.3 -4.58 -0.09 -0.13 -5.04 -5.75 -1.32 -1.52 -3.41 -4.44 -2.56 -5.1 -0.04 -0.07 -2.61 -5.32
--1.24 -4.71 4.11 -1.91 -4.39 -5.77 -0.5 -1.08 -4.34 -6.71 -0.18 -0.24 -0.7 -4.82 -1.3 -5.34
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-0.17 -4.08 -0.04 -0.93 0.91 -4.47 2.8 -2.88 3.02 -2.7 2.3 -3.36 1.84 -3.82 3.32 -1.54
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--2.86 -0.21 -4.64 1.13 -2.91 -0.21 -2.54 0.48 -4.27 1.63 -3.34 2.64 -2.85 3.17 -3.69 2.28
--2.82 3.12 -6.12 5.73 -3.14 2.76 -2.91 2.99 -1.75 4.01 -1.54 4.15 -3.19 2.67 -1.89 1.17
--2.19 0.72 -1.37 4.21 -0.59 2.23 -0.59 2.09 -0.87 0.65 -2.84 1.56 -2.93 2.87 -0.65 4.64
-0.02 5.05 0.02 0.13 0 4.84 -1.56 3.75 0.15 4.92 1.43 5.69 0.5 0.89 4.17 6.66
--0.17 4.41 -0.16 2.69 0.07 1.69 4.17 6.71 0.98 1.13 2.78 5.1 2.84 5.6 0.07 0.13
-2.17 5.04 0.34 4.19 1.07 4.46 1.2 4.5 -3.61 0.21 -6.36 -3.64 -2.24 -1.86 -4.23 -3.8
--3.1 -3.88 -3.28 -3.26 -6.14 -5.55 -4.76 -2.97 -1.25 -2.08 -5.93 -5.01 -1.24 -2.39 -4.36 -6.42
--5.75 -4.23 P
--5.86 -2.78 -5.7 -4.04 -5.68 -3.77 -5.38 -0.63 -0.63 -0.05 -6.04 -0.12 p f*
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--2.3 -5.77 -4.99 3 -4.92 3.06 f*
-7 193 59 rG
-2126.58 3219.38 -1.15 0.07 1.04 1.37 5.58 7.05 4.18 4.23 1.59 1.93 3.27 6.16 2.71 3.78
-6.12 5.91 0.83 0.89 5.46 5.55 6.3 4.88 1.04 1.09 1.83 5.38 0.47 4.66 3.73 6.12
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-5.75 3.6 5.71 5.73 1.25 1.24 3.76 7.23 0.76 0.87 4.19 2.11 1.75 0.91 0.74 0.57
-5.27 3.8 6.01 3.23 4.04 1.5 1.99 0.87 0.29 0.33 6.04 6.23 1.67 1.95 0.93 4.71
-4.73 5.7 3.41 2.04 -2.34 3.13 -0.13 0 -2.8 2.95 -2.23 0.26 -4.28 1.24 0 1.67
-4.93 0.35 0.13 -0.04 5.52 -0.67 6.44 2.97 6.88 4.25 0.76 0.84 4.29 5.34 2.78 4.73
-2.73 3.6 1.22 1.37 1.39 4.19 1.74 4.28 5.54 5.1 4.25 3.19 2.3 1.91 4.64 4.55
-3.82 2.17 6.97 1.89 3.52 1.63 4.79 2.09 5.23 2.45 3.58 1.65 6.62 2.47 1.87 0.8
-6.58 2.84 2.66 1.05 4.52 2.34 5.58 2.08 3.39 0.93 5.57 1.83 2.21 0.93 3.99 2.97
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-5.66 -0.45 6.38 2.32 6.64 3.19 4.1 2.86 3.13 2.04 7.05 3.8 1.22 0.89 4.25 4.52
-3.41 2.8 6.34 1.15 4.43 -0.96 0.84 -0.57 1.7 1.04 -1.04 0.55 -1.91 2.21 4.04 4.02
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--4.82 -3.88 2.15 -2.71 2.06 -2.06 0.99 -0.44 -1.73 -1.82 -2.71 -2.11 -4.82 -3.12 -1.8 -1.46
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-3.71 -1.63 P
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--0.96 0.11 -3.97 0.2 1.24 1.56 -3.02 2.02 -0.28 0.3 -0.46 0.2 -2.93 2.04 -3.23 2.34
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--0.82 0.24 -4.25 1.48 -4.75 0.98 -2.58 3.27 -2.63 3.2 -3.77 2.04 -3.04 2.73 -3.11 2.67
--0.61 0.35 -3.32 1.54 -1.84 3.82 -2.3 3.36 -3.02 2.7 -2.8 2.88 -0.91 4.47 0.04 0.93
--0.17 4.08 -1.65 3.71 -1.43 3.84 -1.39 3.84 -2.61 2.89 -0.04 4.75 0.15 4.77 0.24 2.24
-0.67 2.97 1.3 5.34 0.7 4.82 0.18 0.24 4.34 6.71 0.5 1.08 4.39 5.77 -4.11 1.91
-1.24 4.71 2.61 5.32 0.04 0.07 2.56 5.1 3.41 4.44 1.32 1.52 5.04 5.75 0.09 0.13
-2.3 4.58 0.8 3.93 0.52 3.82 0.61 3.82 -1.74 2.1 -0.7 0.74 -3.53 2.52 -0.89 -0.11
--0.87 -0.45 -5.95 -3.64 -6.36 -2.43 -5.36 -4.08 -1.58 -1.61 -6.53 -4.26 -5.84 -4.04 -0.67 -0.58
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--5.73 -7.18 -5.8 -4.02 -3.87 -3.08 -1.84 -1.45 -1.71 -1 -4.04 -2.5 -6.01 -0.3 p f*
-110 210 9 rG
-2132.38 3222.31 -2.95 0 2.73 3.49 5.73 5.01 3.58 4.69 2.25 5.6 0.59 1.07 5.47 5.12
-5.68 6.12 0.57 0.57 1.48 1.2 0 -5.26 -1.8 -0.89 -0.56 -0.46 0.54 0.2 1.83 1.15
-0 5.26 4.75 3.75 5.1 5.28 0.91 4.88 0.24 4.49 2.37 3.5 3.6 3.02 0 -15.64
--6.25 -3.8 -1.89 -1.39 1.61 -1.61 1.74 -1.13 4.17 1.61 1.49 1.28 -0.23 4.23 -0.63 0.8
-0 15.64 1.26 1.06 0.89 0.54 0 -4.27 -0.61 -0.44 0.43 -0.39 0.45 0.79 -0.28 0.04
-0 4.27 1.13 0.7 1.13 0.11 4.28 -1.24 2.23 -0.26 2.8 -2.95 0.13 0 2.34 -3.13
--3.41 -2.04 -4.73 -5.7 -0.93 -4.71 -1.67 -1.95 -6.04 -6.23 -0.29 -0.33 -1.99 -0.87 -4.04 -1.5
--6.01 -3.23 -5.27 -3.8 -0.74 -0.57 -1.75 -0.91 -4.19 -2.11 -0.76 -0.87 -3.76 -7.23 -1.25 -1.24
--5.71 -5.73 -5.75 -3.6 f*
-2 239 204 rG
-2145.49 3261.42 -1.54 -0.33 1.89 5.75 0.65 0.41 0.3 0.09 5.27 -0.07 1.76 -0.91 -2.45 -3.34
--5.88 -1.61 f*
-255 0 r6
-2147.96 3274.28 -0.57 -1.97 0.13 0 3.88 2.02 -3.45 -0.05 f*
-2156.29 3419.32 -7.11 -2.52 11.32 8.99 7.03 2.25 -11.24 -8.72 f*
-0 255 r6
-2155.68 3248.76 -0.54 -0.2 0.56 0.46 1.8 0.89 -1.83 -1.15 f*
-0 155 255 rG
-2162.29 2586.71 -0.22 0.88 1.02 -0.89 -0.08 -0.61 -0.71 0.63 f*
-0 255 r6
-2167.95 3257.64 -1.61 1.61 1.89 1.39 6.25 3.8 0.63 -0.8 0.23 -4.23 -1.49 -1.28 -4.17 -1.61
--1.74 1.13 f*
-0 155 255 rG
-2167.67 2563.08 -1 3.56 5.19 -3.34 1.97 -1.54 0 -4.93 2.63 -5.25 3.53 -5.75 3.46 -1.3
--0.29 1.58 -3.37 5.73 -5.96 4.99 0 4.93 1.89 -1.47 4.08 -2.5 6.25 -5.54 1.8 -5.77
-0.5 -2.61 0.76 -3.23 -0.09 -2.82 -5.42 1.34 -1.17 0.8 -6.1 5.52 -2.59 5.75 -0.04 0.13
--3.04 5.86 -2.99 5.86 f*
-2 239 204 rG
-2169.1 3291.06 -0.42 0.08 0.98 1.61 0.35 -1.06 -0.91 -0.62 f*
-2176.46 2551.58 -2.63 5.25 5.96 -4.99 3.37 -5.73 0.29 -1.58 -3.46 1.3 -3.53 5.75 f*
-0 255 r6
-2176.46 3276.58 -0.43 0.39 0.61 0.44 0.28 -0.04 -0.45 -0.79 f*
-110 210 9 rG
-2201.67 3286.87 -1.78 -0.24 1.95 0.93 4.69 5.32 3.93 4.6 0.74 0.78 4.75 5.21 3.69 3.54
-2.21 1.82 6.38 4.86 1.28 0.67 6.38 3.43 6.55 1.5 5.75 2.11 0 -2.21 -5.86 -2.19
--0.34 -0.14 -0.93 -0.39 -7.12 -2.84 -5.51 -3.17 -2.15 -1.21 -5.81 -4.51 -2.56 -2.29 -3.23 -3.12
--4.43 -5.21 3.47 -2.69 0.74 0.18 0.95 0.39 5.62 2.34 7.16 4.39 2.5 1.45 5.19 4
-1.22 1.17 4.38 4.49 3.17 1.73 5.6 3.41 -0.21 3.39 -1.82 0.82 0 2.21 0.56 0.22
-2.06 3.77 2.48 3.08 0.61 0.82 0.11 0.38 -5.1 1.19 -3.32 -2.67 -5.25 -4.43 -2.3 -1.78
--6.82 -2.04 -7.12 -2.82 1.56 3.86 0.65 0.48 5.29 4.45 4.38 4.47 1.63 0.93 6.16 1.58
-0 -0.93 -4.25 -1.05 -3.02 -1.43 -3.08 -3.26 0.02 -2.06 6.91 2.04 2.02 1.5 3.67 4.14
--2.26 0.11 0 0.93 0.7 0.17 6.42 2.97 1.91 0.83 7.68 3.6 1.09 0.5 8.07 2.82
-1.39 0.74 8.03 3.47 0.28 0.11 6.39 3.35 3.75 1.39 5.58 1.56 3.15 1.02 4.08 1.73
-3.95 2.97 3.8 2.93 1.02 -0.16 -3.86 -2.91 -3.93 -2.93 -5.93 -2.56 -0.71 -0.23 -7.8 -2.15
--1.93 -0.72 -5.8 -3.3 -3.08 -1.39 -4.97 -2.13 -4.71 -2.49 -4.32 -1.39 -4.55 -2.67 -3.71 -1.5
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--4.05 -2.93 -0.11 -0.08 -2.35 -3 0.57 -0.56 2.52 -1.96 -0.61 -2.82 -5.26 -2.65 -2.38 -1
--1.26 -2.99 -0.75 -2.93 -4.15 -3.54 -1.75 -2.37 -0.82 -0.99 -6.49 -4.34 -0.02 -0.02 -4.06 -3.97
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--3.45 -4.06 0.18 -3.19 1.21 -2.82 -2.62 -4.36 -0.78 -1.48 -0.24 -2.34 1.02 -2.62 0.11 -0.28
--0.04 -0.11 -1.17 -3.88 1.86 -2.56 -1.69 -4.36 -2.04 -3.73 -0.69 -1.3 -1.26 -4.38 -0.96 -4.32
-2.13 -2.58 1.11 -3.17 -0.87 -0.54 1.47 -3 1.57 -2.95 -5.38 -3.58 1.71 -2.97 -5.28 -3.73
--5.21 -3.78 -0.62 -0.45 -5.91 -1.22 -1.93 -0.11 -0.67 4.04 -0.32 1.21 -0.76 2.45 -0.8 3.82
--2.14 1.13 -3.41 -0.54 -3.32 -0.28 -2.22 0.95 0.07 4.23 0.09 0.24 1.04 4.97 1.26 4.95
--3.13 2.3 2.39 3.45 2.25 3.3 2.72 3.54 6.05 2.25 3.65 4.58 1.52 2.61 1.78 2.67
-0.64 3.91 1.3 4.14 1.3 1.61 1 2.87 1.05 3.88 -0.05 3.41 0.98 3.78 2.8 4.32
-0.91 1.48 1.41 2.6 1.7 3.82 4.71 4.55 0.02 0.05 5.66 4.6 1.8 1.46 4.82 3.12
-2.71 2.11 1.73 1.82 -0.99 0.44 -2.06 2.06 -2.15 2.71 4.82 3.88 -2.11 2.63 0.02 0.17
-0.2 0.3 3.17 3.28 -1.46 0.24 -6.49 -1.02 -6.29 -0.76 -0.89 -0.56 -4.04 -4.02 1.91 -2.21
-1.04 -0.55 -1.7 -1.04 -0.84 0.57 -4.43 0.96 -6.34 -1.15 -3.41 -2.8 -4.25 -4.52 -1.22 -0.89
--7.05 -3.8 -3.12 -2.04 -4.1 -2.86 -6.64 -3.19 -6.38 -2.32 -5.66 0.45 f*
-0 255 r6
-2213.71 3291.43 -3.47 2.69 4.43 5.21 3.23 3.12 2.56 2.29 5.81 4.51 2.15 1.21 5.51 3.17
-7.13 2.84 0.93 0.39 0 -3.43 -2.5 -0.3 -1.19 -0.46 -5.99 -2.78 -7.18 -3.54 -0.78 -0.59
--4.04 -4.82 2.28 -1.59 6.62 2.38 3.06 2.41 2.41 4.14 4.49 4.06 2.82 1.06 0 3.43
-0.34 0.14 5.86 2.19 1.82 -0.82 0.21 -3.39 -5.6 -3.41 -3.17 -1.73 -4.38 -4.49 -1.22 -1.17
--5.19 -4 -2.5 -1.45 -7.16 -4.39 -5.62 -2.34 -0.95 -0.39 -0.74 -0.18 f*
-255 203 0 rG
-2222.59 3299.37 -2.28 1.59 4.04 4.82 0.78 0.59 7.18 3.54 5.99 2.78 1.19 0.46 2.5 0.3
--2.82 -1.06 -4.49 -4.06 -2.41 -4.14 -3.06 -2.41 -6.62 -2.38 f*
-110 210 9 rG
-2230.14 3166.58 -2.34 3.21 0.13 2.39 3.3 5.86 -0.07 0.32 0.44 -0.02 4.99 3.43 0.39 1.13
--1.8 3.36 3.02 4.19 0.78 -1.13 5.04 3.95 5.08 3.88 5.14 3.82 5.18 3.77 0.24 -0.37
--3.34 -6.16 2.06 -2.78 0.26 -0.66 0.75 -2.97 -1.56 -5.86 -0.02 -0.26 -2.93 -6.23 -0.02 -0.83
--1.62 -6.49 3.08 -2.28 4.08 -1.34 2.04 -3.28 2.82 -2.56 2.97 -2.43 4.73 -0.59 2.93 -0.07
-2.78 0.57 4.62 -0.57 3.69 -0.95 0.46 -0.09 5.1 0.07 2.67 1.43 0.02 1.59 -1.61 3.64
--0.09 3.38 4.75 3.88 1.3 -1 -4.14 -4.34 2.93 -2.15 2.97 -2.11 -3.93 -4.45 3.11 -2.11
--3.8 -4.51 3.23 -2.08 -1.54 -1.91 -4.54 0.58 -1.34 -0.89 -6.62 -2.64 -0.09 0 -3.71 1.63
--3.6 1.84 -3.41 2.11 -4.15 1.23 -3.6 1.89 -3.21 2.3 -3.43 2.09 -3.11 1.07 -1.32 -0.05
--5.86 -1.76 -2 -0.63 -3.54 2.06 -3.36 2.25 -3.21 2.41 -3.69 1.96 -1.02 0.11 -3.47 1.11 f*
-255 0 r6
-2231.99 3132.42 -1.76 1.5 2.3 -0.87 3.39 -2.71 3.69 -2.39 5.95 0.43 1.61 -0.17 3.67 -0.17
-5.57 0.07 1.61 -0.26 2.39 -1.63 -3.64 -4.78 -3.63 2.48 -3.66 -4.8 -3.62 2.56 -3.56 2.61
--3.75 -4.79 -3.59 2.69 -3.49 2.73 3.88 4.73 -3.34 2.78 f*
-2237.07 2533.03 -3.95 5.12 4.43 0.22 3.84 -5.1 -4.32 -0.24 f*
-0 255 r6
-2233.46 3324.18 -0.02 2.06 3.08 3.26 3.02 1.43 4.25 1.05 2.26 -0.11 -3.67 -4.14 -2.02 -1.5
--6.91 -2.04 f*
-255 G
-2239.46 3198.85 -4.56 -3.41 2 -3.09 1.3 -1.91 0.78 -1.13 5.04 3.95 5.08 3.88 5.14 3.82
-5.18 3.77 0.24 -0.37 1.67 -2.43 5.17 3.73 5.2 3.67 5.27 3.6 5.3 3.54 5.36 3.45
-5.41 3.41 4.62 2.82 0.83 0.5 5.49 3.26 1.43 -2.3 1.52 -2.29 5.41 3.3 5.45 3.25
--1.39 2.15 -1.32 2.17 -1.26 2.21 1.95 1.02 3.71 1.95 1.2 -2.15 1.26 -2.1 1.33 -2.11
-1.39 -2.05 2.76 1.59 2.71 1.56 5.49 3.1 -1.26 1.93 -1.19 1.96 -1.13 1.97 5.7 2.82
-5.77 2.73 2.11 0.98 3.69 1.7 -0.91 1.78 -0.82 1.78 -0.02 0.05 -5.91 -2.54 -0.84 1.91
--5.93 -2.54 -5.9 -2.58 -0.89 2.06 -5.91 -2.61 -5.88 -2.69 -2.67 -1.26 -3.17 -1.49 1.06 -2.28
-1.11 -2.26 -5.69 -3 -1.17 2.34 -1.11 2.34 -5.77 -2.93 -1.08 2.45 5.81 2.84 -0.95 2.41
--0.89 2.43 5.95 2.63 -0.76 2.38 -0.7 2.39 -0.61 2.43 -6.1 -2.38 -0.59 2.52 -0.54 -0.21
--5.56 -2.2 -0.54 2.63 -6.12 -2.41 -0.5 2.73 -6.14 -2.43 -6.07 -2.5 -6.08 -2.58 0.63 -2.95
--5.99 -2.75 -5.94 -2.84 0.8 -3.08 0.91 -3.04 1 -3.02 1.08 -2.97 -5.71 -3.19 1.24 -3.02
-1.32 -2.97 -4.69 -2.87 -0.87 -0.54 1.47 -3 1.57 -2.95 -5.38 -3.58 1.71 -2.97 -5.28 -3.73
--5.21 -3.78 -0.62 -0.45 f*
-0 255 r6
-2250.96 3223.03 -2.13 2.58 0.96 4.32 1.26 4.38 0.69 1.3 2.04 3.73 1.69 4.36 -1.86 2.56
-1.17 3.88 0.04 0.11 -0.11 0.28 -1.02 2.63 0.24 2.34 0.78 1.48 2.62 4.36 -1.21 2.82
--0.18 3.19 3.45 4.06 0.42 0.54 -0.37 1.02 -0.61 1.82 0.76 1.28 5.9 3.95 0.63 0.37
-3.78 3.95 -0.04 3 4.06 3.97 0.02 0.02 6.49 4.34 0.82 0.99 1.75 2.37 4.15 3.54
-0.75 2.93 1.26 2.99 2.38 1 5.26 2.65 0.61 2.82 -2.52 1.96 -0.57 0.56 2.35 3
-0.11 0.08 4.05 2.93 1.48 2.87 -1.58 0.98 -5.38 1.22 -1.06 0.49 -4.04 1.11 -6.32 -0.35
--2.97 -1.37 -5.1 -1.93 -6.81 -1.43 -6.46 -0.93 -3.56 2.32 0.07 1.85 0.34 1.61 1.55 3.57
--3.02 2.32 -2.19 0.71 3.71 1.5 4.55 2.67 4.32 1.39 4.71 2.49 4.97 2.13 3.08 1.39
-5.8 3.3 1.93 0.72 7.8 2.15 0.71 0.23 5.93 2.56 3.93 2.93 3.86 2.91 1.02 -0.15
--3.97 -2.87 -3.86 -2.93 -5.19 -2.89 -2.97 -0.89 -7.92 -1.78 -0.09 -0.04 -5.18 -3.28 -5.9 -2.62
--1.91 -0.82 -4.14 -3.58 -1.16 -3.47 -2.69 -3.56 -0.48 -3.08 0.13 -0.3 3.06 -3.04 0.69 -0.04
-0.85 0.19 6.04 1.29 5.94 2.69 2.82 3.23 2.62 3.21 1.93 1.34 7.42 1.59 -0.09 -3
--1.58 -3.02 0.85 -3.02 0.28 -0.11 5.84 -0.55 4.16 0.61 2.8 0.43 7.04 0.96 3.12 0.84
-5.12 1.54 2.63 0.5 3.79 2.26 3.39 2.21 1.73 0.78 3 -1.49 -0.82 -2.47 -3.86 -2.06
--4.06 -2.13 -2.25 -2.39 -1.41 -2.45 -0.8 -2.48 -1.63 -2.43 -1.8 -2.46 -2.5 -1.54 -3.8 -1
--4.3 -2.54 -0.15 -0.15 0.04 -0.04 0.24 0.04 6.97 1.84 0.15 -1.58 -2.02 -2.52 -0.39 -0.41
--4.38 -2.34 -3.37 -2.8 -0.97 -0.89 -6.95 -2.13 -0.78 -0.5 -2.39 -2.95 -0.3 -2.7 1.21 -1.3
-0.41 -1.04 -0.2 -2.62 -0.54 -2.7 -0.7 -2.73 -1.04 -5.46 -0.56 -2.41 -0.3 -0.45 -1.78 -3.12
--0.46 -2.82 0.8 -2.45 -1.2 -3.09 -3.05 -2.02 -2.11 -2.54 2.54 -0.91 3.3 0.22 0.87 -2.43
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-0.63 -2.95 -5.99 -2.75 -5.94 -2.84 0.8 -3.08 0.91 -3.04 1 -3.02 1.08 -2.97 -5.71 -3.19
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--0.26 0.66 -2.06 2.78 3.34 6.16 1.67 -2.43 5.17 3.73 5.2 3.67 5.27 3.6 5.3 3.54
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--8.55 0.28 -2.15 1.3 -2.04 1.32 -1.95 1.32 -1.87 1.31 -1.78 1.32 -1.7 1.32 -9.13 1.08
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--7.77 3.47 1.41 0.84 1.48 0.85 -7.46 3.64 -7.38 3.75 1.74 0.84 1.78 0.82 1.87 0.8
--6.96 3.88 2.02 0.8 2.06 0.76 2.13 0.76 2.17 0.71 -6.43 4.02 -6.31 4.1 -6.19 4.21
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-4.64 3.97 2.3 -2.12 -4.55 -4.01 1.74 -1.55 -4.64 -3.93 -5.91 -2.91 -0.54 -0.15 f*
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--4.12 -1.13 -3.56 1.13 -1.06 2.93 -0.83 3.04 f*
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--1.89 2.06 -1.84 2.12 -1.78 2.15 -1.39 -0.96 -5.43 -0.5 -0.37 -0.04 -1.5 2.43 f*
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--1.82 -0.64 -5.23 -0.86 f*
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--0.57 -0.21 f*
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--6.59 -0.73 f*
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--3.58 -0.26 -2.15 -2.25 0.93 -1.85 1.46 -1.34 -2.15 -2.17 f*
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-255 203 0 rG
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-0.13 0.09 5.23 3.23 3.73 4.25 3.91 4.13 3.93 4.1 1.41 3.17 1.02 1.82 1.26 3.43
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--1.89 4.91 f*
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--3.36 -3.35 -1.62 -1 -1.98 -1.36 -1.45 1.13 -2.78 2.32 f*
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-0.26 0.09 3.73 0.39 3.69 0.57 3.64 0.76 3.13 2.71 1.06 2.58 0.48 5.21 0.07 0.13
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-4.06 0.3 1 -0.13 4.82 0.61 4.17 1.43 2.08 3.95 3.1 2.65 4.34 1.21 4.27 0.02
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--1.75 2.22 -3.23 3.64 -2.73 1.65 -3 0.99 -4.62 -0.25 -1.96 -4.19 -0.82 0.15 -0.87 1.34
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--2.97 6.29 -0.08 2.43 1.69 4.56 1.54 4.66 1.71 4.4 2.48 3.61 3.03 3.04 0.66 3.26
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-1.3 -3.58 P
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--3.06 0.72 -3.82 -0.39 -1.34 -1.13 -2.35 -0.19 0.26 -2.06 -3.73 -1.57 -3.99 3.13 -0.26 0.24 p f*
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--0.56 5.06 -3.95 -0.24 -0.46 5.04 f*
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--1.73 0.82 f*
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--1.78 -0.3 f*
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--2.06 0.89 -1.39 -0.2 -1.3 -0.37 -1.54 0.11 f*
-255 G
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-10.31 4.68 10.2 4.88 10.13 5.05 10.02 5.23 9.96 5.4 9.83 5.58 9.74 5.75 9.66 5.93
-9.55 6.1 9.42 6.25 9.33 6.4 9.2 6.59 9.09 6.73 8.98 6.91 8.86 7.05 8.75 7.2
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-4.86 10.22 4.69 10.3 4.51 10.4 4.34 10.45 4.14 10.55 3.95 10.61 3.77 10.68 3.61 10.74
-3.4 10.81 3.21 10.87 3.02 10.92 2.84 10.95 2.63 11.03 2.45 11.07 2.25 11.09 2.06 11.13
-1.87 11.18 1.67 11.21 1.48 11.22 1.28 11.26 1.09 11.29 0.89 11.28 0.69 11.31 0.5 11.33
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-4.86 10.22 4.69 10.3 4.51 10.4 4.34 10.45 4.14 10.55 3.95 10.61 3.77 10.68 3.61 10.74
-3.4 10.81 3.21 10.87 3.02 10.92 2.84 10.95 2.63 11.03 2.45 11.07 2.25 11.09 2.06 11.13
-1.87 11.18 1.67 11.21 1.48 11.22 1.28 11.26 1.09 11.29 0.89 11.28 0.69 11.31 0.5 11.33
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-5.08 1.26 -1.75 5.17 4.96 1.3 4.95 1.37 4.9 1.41 4.88 1.48 2.04 -5.16 4.91 1.52
-4.88 1.59 4.84 1.63 0.93 0.3 2.36 0.85 1.5 0.52 -0.68 1.5 -1.07 2.37 -0.58 1.28
--2.34 5.1 -4.67 -1.67 -2.32 5.1 -4.62 -1.61 -2.3 5.08 -4.58 -1.54 -4.62 -1.5 -4.66 -1.43
--4.69 -1.39 -2.02 5.1 -4.67 -1.33 -1.97 5.08 -4.6 -1.26 -4.64 -1.24 1.84 -5.1 f*
-255 203 0 rG
-2597.92 3341.41 -3.5 -2.93 6.55 -0.11 6.14 0.3 0.41 -0.02 1.22 0.33 2.04 2.93 -2.93 2.04
--6.62 1.13 -1.98 2.13 -1.63 0.87 0.59 -1.15 2.67 -1.93 -2.71 -3.2 -0.26 -0.39 f*
-110 210 9 rG
-2595.59 3420.96 0.61 0.37 2.07 -0.8 -2.67 0.43 f*
-0 255 r6
-2599.16 3233.03 0.26 0.29 0.71 0.76 0.13 -1.3 -1.11 0.26 f*
-110 210 9 rG
-2602.04 3407.45 -0.2 -0.11 0.13 0.13 2.71 2.73 3.86 2.15 1.75 -0.79 -4.16 -2.04 -4.1 -2.08 f*
-2604.58 3420.01 1.78 0.93 6.27 -2.72 -3.14 -1.52 -4.91 3.3 f*
-255 35 0 rG
-2619.38 3272.46 -2.93 2.54 1.52 1.67 1.57 1.69 0.52 0.76 1.09 -1.15 4.27 -3.28 0.52 -2.13
-0 -0.23 -0.02 0 -6.53 0.13 f*
-0 255 r6
-2627.34 3373.66 1.65 0.43 1.54 -1.15 -3.19 0.72 f*
-189 0 54 rG
-2630.79 2439 -1.45 -1.37 3.82 0.52 0.26 1.79 -2.63 -0.93 f*
-0 155 255 rG
-2634.79 3047.18 -1.84 0.86 0.63 2.37 4.08 3.93 2.78 1.8 1.69 0.95 4.1 3.54 -0.3 3.21
-2.36 0.85 1.15 -5.54 4.3 -3 1.43 -0.95 3.21 -4.84 3.88 -0.82 4.52 2.78 1.8 1.8
--1.74 5.41 -4.84 4.21 -0.96 1.2 -2.43 3.55 -3.97 4.54 -2.13 1.02 -1.69 0.83 -0.41 -3.45
--1.3 -4.71 -1.07 2.37 0.46 1.64 0.24 6.08 0.22 1.95 5.08 0.72 4.03 2.78 5.19 0.52
-0.21 -0.04 -0.04 -0.28 -3.23 -4.38 -1.5 -3.45 3.59 -4.69 3.69 -4.62 0.74 -0.46 6.14 -2.93
-1.8 -1.85 4.32 -1.82 2.78 -1.04 3.41 -2.61 1.82 -5.45 -0.48 -2.06 -5.14 -1.54 -1.48 0.71
--5.1 1.02 -4.56 1.39 -1.98 0.3 -5.25 -1.19 -5.99 0.63 -0.59 0.08 -2.45 0.35 -4.21 4.49
--0.8 0.8 -0.73 -1.32 -2.87 -3.73 -4.58 -2.8 -5.99 0.89 f*
-255 0 r6
-2643.71 2298.18 -10.68 -2.02 11.72 3.38 11.7 3.36 11.72 3.39 12.61 3.3 -12.35 -3.8 -12.37 -3.82
--12.35 -3.79 f*
-0 255 r6
-2635.57 3371.96 2.5 0.54 1.54 -1.19 -4.04 0.65 f*
-255 G
-2650.57 2978.06 -5.88 -1.43 1.32 -5.36 1.31 -5.41 5.99 1.43 1.32 -5.4 1.28 -5.41 6.06 1.46
-1.28 -5.43 1.26 -5.42 1.21 -5.45 6.17 1.5 1.19 -5.45 1.2 -5.47 6.2 1.54 1.18 -5.49
-1.13 -5.49 1.09 -5.5 6.29 1.57 1.09 -5.54 6.29 1.61 1.08 -5.54 6.3 1.65 6.27 1.7
--1.15 5.55 -1.2 5.56 -1.24 5.53 -6.16 -1.73 -1.24 5.54 -1.3 5.51 -6.1 -1.7 -1.3 5.49
--1.35 5.47 -6.05 -1.65 -1.34 5.46 -6.05 -1.63 -1.33 5.45 -1.39 5.44 -1.43 5.43 -5.95 -1.58
--1.39 5.42 -1.45 5.41 -5.88 -1.54 -1.46 5.38 -5.86 -1.49 f*
-2 239 204 rG
-2649.43 3059.16 -1.15 5.54 1.5 0.52 -0.68 1.5 1.3 4.71 0.41 3.45 1.69 -0.83 0 -2.73
--0.7 -5.36 1.65 -5.38 5.01 -4.19 2.7 -5.01 0.32 -0.07 0.5 0.37 -1.65 5.4 -1.87 5.34
--2.59 5.06 -3.38 3.84 0 2.73 2.13 -1.02 3.97 -4.54 2.43 -3.55 0.96 -1.2 4.84 -4.21
-1.74 -5.41 -1.8 -1.8 -4.52 -2.78 -3.88 0.82 -3.21 4.84 -1.43 0.95 -4.3 3 f*
-255 G
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-4.41 1.97 2.78 -5.05 2.73 -5.05 4.49 2.06 2.76 -5.1 -4.56 -2.06 2.64 -5.14 2.61 -5.14
-2.54 -5.18 4.78 2.11 4.7 2.14 2.63 -5.18 4.73 2.21 4.67 2.28 -2.76 5.17 -2.82 5.14
--2.86 5.12 -2.93 5.1 -2.97 5.05 -3.02 5.04 -3.06 4.99 -4.18 -2.19 -3.06 4.97 -4.17 -2.12
--4.23 -2.09 -2.95 4.97 4.16 2.06 4.1 2.13 4.04 2.17 3.99 2.23 -3.29 4.88 -3.35 4.86
--3.38 4.79 -3.78 -2.17 -3.36 4.8 -3.73 -2.11 -3.34 4.79 -3.73 -2.04 -3.77 -1.97 -3.8 -1.93
-3.11 -4.84 -3.95 -1.91 2.97 -4.88 f*
-7 193 59 rG
-2653.47 3060.57 -1.65 5.38 0.7 5.36 3.38 -3.84 2.59 -5.06 1.87 -5.34 1.65 -5.4 -0.5 -0.37
--0.32 0.07 -2.7 5.01 -5.01 4.19 f*
-110 210 9 rG
-2657.23 3157.95 -0.24 1.82 1.69 -0.83 0.44 -1.61 -1.89 0.61 f*
-2672.96 3370.72 -1.24 -0.84 3.67 -3.6 2.52 -0.18 2.54 0.45 -4.45 3.65 -3.04 0.52 f*
-0 255 r6
-2677.13 3378.08 -0.46 0.24 0.02 0.11 0.13 -0.09 0.31 -0.26 f*
-7 193 59 rG
-2683.98 3387.5 0.35 0.04 5.66 0.39 5.71 0.29 5.14 -4.34 -5.79 -0.16 -4.77 -0.2 -3.86 2.34
--2.43 1.63 f*
-2702.06 3375.17 2.52 -0.02 2.06 -1.97 -4.58 1.99 f*
-2 239 204 rG
-2707.71 3187.02 -2.46 -2.69 2.96 -5.73 3.71 0.07 4.79 0.83 0.39 -0.02 6.58 -1.93 1.43 -0.24
-3.86 1.75 1.25 4 -0.69 2.56 -4.66 4.6 -4.49 0.76 -3.69 -1.78 -0.28 -0.05 -5.49 -0.04
--3.21 -2.08 f*
-7 193 59 rG
-2711.71 3379.38 -5.03 4.54 5.91 -0.09 -1.46 1.3 3.1 -1.34 0.57 -1.96 -1.73 -2.49 -1.35 0.04 f*
-0 255 r6
-2707.46 3366.52 -0.48 0.17 0.07 0.26 0.71 -0.3 -0.3 -0.13 f*
-2 239 204 rG
-2711.13 3385.13 -3.88 3.32 5.83 -0.05 0.05 -0.02 9.27 -4.95 6.84 -5.04 -5.54 0.41 -6.01 0.35
--4.62 0.17 1.73 2.49 -0.57 1.96 -3.1 1.34 f*
-0 155 255 rG
-2713.11 3388.41 -5.62 4.69 4.95 0 3.91 -2.56 2.67 -2.3 1.89 -0.09 7.18 -2.99 2.45 -2.26
-5.34 -5.12 3.04 -0.33 7.66 -5.57 -5.6 0.75 -6.18 0.72 -5.04 5.01 -0.52 0.05 -6.84 5.04
--9.27 4.95 -0.05 0.02 0.02 0 f*
-0 255 r6
-2713.63 3318.17 -2.86 2.78 1.04 0.8 5.25 0.98 3.65 -3.61 -0.92 -1.73 -6.16 0.79 f*
-2712.61 3243.96 -0.07 0.72 0.26 0.28 1.26 2.6 0.69 3.26 3.32 2.08 2.28 -0.71 5.23 0.95
-1.29 1.09 3.49 0.45 2.52 0.02 0 -4.19 -1.34 -0.16 -1.35 -3.14 1.87 -3.3 3.58 0.59
--1.54 4.64 -1.21 1.37 0 4.19 0.3 0 3.55 -3 2.3 -2.61 5.25 -5.05 0.43 -0.85
-5.73 -4.62 5.84 -3.47 2.28 -3.05 3.02 -3.34 5.36 -5.32 0.76 -1.34 -1.09 -0.16 -5.2 -0.39
--1.41 0.15 -5.95 2.61 -5.99 2.34 -5.9 2.73 -4.3 1.98 -1.73 0.39 -0.13 -0.07 -3.19 -1.52
--2.38 -2.67 -1.22 -3.36 3.23 -4.52 2.56 -1.86 0 -9.03 -0.98 -0.43 -1.24 -3.58 0.11 -0.46
-1.24 -0.52 3.96 1.76 -3.1 3.23 0 9.03 2.86 -2.09 5.43 -3.93 5.56 -3.51 5.88 -2.65
-2.21 -4.19 -3.73 -2.06 -1.28 -0.26 -5 0.09 -2.9 -1.56 -1.11 -0.22 -6.01 -0.24 -0.52 -0.18
--6.05 2.36 -1.09 3.39 -0.95 5.1 0.02 1.87 -0.57 2.82 -1.39 5.14 -0.76 2.17 -1.43 3.27
-2.1 2.8 -0.06 4.04 -2.54 4.95 -2.73 1.84 -2.98 1.82 -5.36 5.46 f*
-255 0 r6
-2712.43 3393.1 0.87 -0.02 3.04 -2.54 -3.91 2.56 f*
-7 193 59 rG
-2711.63 3370.71 3.47 -0.18 2.11 -2.14 -5.58 2.32 f*
-255 0 r6
-2722.07 2690.39 -6.46 -0.79 0.95 5.45 0.88 5.47 0.82 5.49 6.54 0.87 0.78 5.53 0.73 5.54
-0.67 5.55 0.61 5.55 0.56 5.55 0.48 5.58 6.6 1.09 0.46 5.62 6.57 1.15 0.42 5.64
-6.53 1.22 0.35 5.68 6.54 1.26 -0.37 -5.73 -0.41 -5.71 -0.5 -5.7 -0.54 -5.71 -0.61 -5.69
--0.67 -5.68 -6.47 -1.07 -0.71 -5.66 -0.78 -5.62 -0.85 -5.62 -6.45 -0.96 -0.89 -5.58 -0.96 -5.55
--1.02 -5.55 -1.06 -5.54 -6.36 -0.8 -6.41 -0.76 1.04 5.47 f*
-7 193 59 rG
-2720.21 3259.16 -3.06 -2.26 3.38 -3.08 2.52 0.47 -1.08 4.13 -1.04 1.17 -0.71 -0.44 f*
-255 0 r6
-2720.9 3388.15 4.08 -0.19 3.11 -2.8 -7.18 2.99 f*
-255 203 0 rG
-2732.05 3243.92 -1.87 3.3 1.35 3.14 1.34 0.16 1.21 -1.37 1.54 -4.64 -3.58 -0.59 f*
-2732.9 3204.21 -0.11 0.46 1.24 3.58 0.98 0.43 3.1 -3.23 -3.96 -1.76 -1.24 0.52 f*
-7 193 59 rG
-2740.61 3223.66 -4.61 0.5 0.61 -4.58 1.95 -2.09 5.28 -4.34 5.9 -2.66 1.56 -0.5 4.88 -0.65
-2.63 0.15 -1.29 3.71 -5.21 4.82 -4.84 1.95 0 -2.97 4.21 -0.98 2.6 -3.47 -3.69 0.3
--3.12 4.15 0 2.97 -1.15 0.46 -5.73 3.23 f*
-2 239 204 rG
-2733.81 3360.3 2.23 -0.28 1.8 -2.15 -4.03 2.43 f*
-255 0 r6
-2738.91 3377.45 3.1 -0.37 6.19 -0.84 -5.45 5.4 6.17 -0.82 5.53 -5.55 6.27 -1.11 6.31 -1.26
-6.38 -1.41 5.4 -6.04 6.45 -1.71 5.14 -6.21 6.51 -2.02 4.88 -6.36 4.58 -6.38 6.55 -2.45
-4.32 -6.49 4.04 -6.49 6.55 -2.87 3.73 -6.59 6.53 -3.15 3.43 -6.66 3.17 -6.61 -6.49 3.38
--6.46 3.23 -3.23 6.39 -6.49 2.97 -3.52 6.31 -6.51 2.67 -3.78 6.21 -4.05 6.2 -6.51 2.28
--4.3 6.1 -4.58 6.1 -6.46 1.82 -4.82 5.95 -6.4 1.56 -5.05 5.77 -6.34 1.26 -6.29 1.13
--6.23 0.98 -0.61 0.11 -7.66 5.57 f*
-7 193 59 rG
-2745.21 3134.14 -0.79 0.36 0.15 0.37 0.57 0.33 3.86 1.3 3.11 3.13 -0.17 2.54 0.7 3.28
-1.47 4.66 -0.82 3.23 -3.06 6.36 -0.09 0.29 1.59 4.21 1.73 -0.3 1.84 -1.2 0 -1.87
--2.49 -3.43 1.39 -2.95 1.54 -5.99 -1.3 -3.54 5.7 -1.06 2.15 4.06 -0.24 6.12 -0.12 0.39
--4 4.75 -2.63 1.65 0 1.87 3.54 -2.28 5.68 -3.13 3.56 -5.9 -0.65 -2.52 -2.15 -4.06
-0.26 -6.53 0.24 -0.48 3 -5.43 -0.46 -4.19 -1.56 -5.23 0.09 -1.74 2.97 -1.93 2.5 -1.54
-5.12 -0.39 3.14 -0.24 3.1 0.02 4.56 -1.2 2.43 0.11 3.45 3.23 2.8 4.01 3.25 3.39
-0.72 4.2 -0.09 2.13 -0.24 7.1 -0.16 1.04 0.16 5.55 1.28 5.12 0.29 3.95 -0.41 2.47
-2.11 4.11 2.23 0.54 5.6 -3.19 1.43 -0.07 5.13 1.28 1.24 -0.04 3.21 2 2.37 3.95
-1.61 4.62 0 6.01 1.67 4.45 0.3 2.47 0.15 2.96 0.72 0 0.84 -1.35 2.75 -3.54
-0 -4.84 -2.71 -1.82 -1.08 -0.71 -1.13 -5.04 -1.84 -4.43 -2.32 -4.01 -2.73 -3.64 -3.54 -0.52
--1.96 -0.41 -3.93 0.19 -1.48 0.06 -2.23 0.96 -3.95 -2.36 -1.22 -5.14 -1.41 -5.03 -0.06 -3
-0.56 -4.17 0.16 -5.93 0.08 -1.24 -1.28 -5.62 -3.32 -3.37 -2.87 -3.93 -3.38 -3.34 -4.12 -0.18
--2.34 0.63 -5.91 -0.02 -0.2 0.02 -6.42 0.48 -2.08 -0.24 -4.88 4.05 -0.24 4.88 1.98 4.71
-0.15 1.37 -2.89 1.71 -3.08 1.2 -0.16 0.09 -4.96 3.69 -1.56 -0.76 -1.78 -2.69 -0.54 -1.36
-2.9 -5.14 4.14 -4.73 -0.91 -4.41 -2.88 -3.82 -1.15 -4.69 4.36 -4.45 4.77 -4.14 3.84 -4.9
-2.47 -0.76 5.29 1.02 2.21 0.05 3.39 0.57 5.58 -0.96 1.43 -0.35 5.52 -1.82 3.13 -1.71
-2.97 -1.24 4.6 -0.8 3.7 0.02 2.67 -0.36 4.28 -1.7 3.12 -0.11 4.77 1.91 2.54 -0.11
-3.25 0.63 5.6 -0.37 0.89 -0.15 4.34 2.54 2.67 4.84 1.96 4.86 -5.21 -0.44 -4.47 -1.5
--0.7 0.15 -5.99 1.82 -3.84 5.45 -0.09 5.6 2.73 4.27 2.56 4.45 1.84 5.21 1.54 3.46
--0.95 3.04 0.17 6.82 0.11 1.65 -2.97 8.07 0 0.07 2.19 4.32 1.06 5.41 0.68 5.64
-0.97 5.27 -0.41 6.45 0 4.84 1.11 -1.39 3.02 -7.21 -1.34 -4.91 -0.59 -3.86 3.58 1
-0.65 5.62 0.78 5.43 4.5 1.95 1.84 -0.11 5.86 -2.15 1.87 -0.48 0.8 -0.61 0 -6.49
--3.17 -3.28 -3.34 -3.13 -0.21 -6.33 0.5 -7.23 -0.07 -1.04 -1.3 -4.37 1.34 -8.55 0.3 -0.8
-0.76 -0.41 4.21 -3.89 3.95 1.67 3.47 3.28 2.25 -0.02 3.15 1 2.28 4.62 1.45 5.46
--1.06 2.54 -4.71 3.8 -0.54 0.11 -0.65 1.15 -3.5 5.89 -2.91 7.36 -0.67 1.89 -0.43 0.09
--1.11 0.2 0 6.49 2.88 -2.11 1.26 -2.04 2.54 -7.12 0.26 -2.17 3.08 -7.54 5.02 -4.6
-2.58 -6.23 -2.06 -4.82 -2.98 -3.82 -4.49 -1.43 -0.57 0.02 -3.79 -2.88 -3.65 -3.09 -2.71 -0.67
--3.79 1.93 -1.41 0.72 -0.79 -0.18 -6.21 2.08 -0.82 -0.11 -2.41 -4.49 -2.59 -4.34 -0.19 -0.61
--0.96 -5.58 -1.24 -6.23 0.11 -2.11 1.82 -0.37 4.38 -2.06 2.89 0.61 4.97 1.59 2.73 1.45
--1.3 -3.34 -1.72 -5.95 -3.28 -3.95 -2.93 -4.5 -4.1 -2.88 -2.52 0.46 -4.11 0.26 -5.21 -0.98
--0.26 0.02 P
--5.21 -1.33 -4.49 0.18 -2.43 0.95 -4.94 0.69 -1.65 -0.02 -6.34 1.13 -0.8 0.34 -5.08 2.82
--3.97 1.32 -3.11 0.72 -3.99 0.7 -5.34 -1 -0.74 -0.2 -4.34 -1.11 -4.88 1.52 -3.67 5.01
--5.04 3.88 -0.04 0 -5.1 3.86 0.57 2.15 1.87 5.21 2.76 3.93 0.43 1.99 -4.1 4.77
--4.12 4.73 -4.64 3.13 p f*
-2 239 204 rG
-2751.7 3216.02 -4.21 0.98 3.12 -4.15 3.69 -0.3 -2.6 3.47 f*
-2751.73 3254.58 -2.69 -0.87 1.54 -4.79 0.89 -0.61 5.81 -5.25 5.64 -4.86 0.11 -0.09 0.09 -0.02
-2.26 3.06 -1.26 4.97 -0.37 0.5 -5.93 6.45 -6.1 1.52 f*
-255 G
-2764.71 3500.33 -13.39 6.81 11.74 -6.06 11.76 -6.05 11.74 -6.05 7.81 -4.04 -2.86 1.72 -13.41 6.83
--13.39 6.84 f*
-0 155 255 rG
-2755.08 3172.25 -3.34 -2.5 2.76 -4.43 5.23 -3.69 1.73 -0.85 2.61 3.34 0.24 4.1 -1.22 2.41
--0.12 5.62 5.79 -0.83 1.04 0.37 6.38 0 -3.17 7.44 -5.6 3.28 -3.82 -0.22 -2.54 -3.12
-0.55 -5.75 -3.11 -2.72 -0.3 -0.21 0 -3.86 1.32 -2.35 -2.9 0.02 0.73 1.93 0.85 0.39
-0 3.86 -3.11 -2.25 f*
-110 210 9 rG
-2755.29 3127.56 -2.9 5.14 0.54 1.36 1.78 2.69 1.56 0.76 4.96 -3.69 0 -4.43 1.46 -3.41
-1 0.54 0.48 0.96 -2.93 1.91 0 4.43 0.16 -0.09 3.08 -1.2 2.89 -1.71 -0.15 -1.37
--1.98 -4.71 0.24 -4.88 4.88 -4.05 2.08 0.24 6.42 -0.48 0.2 -0.02 5.91 0.02 2.34 -0.63
-4.13 0.18 3.38 3.34 2.87 3.93 3.32 3.37 1.28 5.62 -0.08 1.24 -0.16 5.93 -0.56 4.17
-0.06 3 1.41 5.03 1.22 5.14 3.95 2.36 2.23 -0.96 1.48 -0.06 0 -2.65 -3.93 -1.67
--0.59 -0.2 -1.88 -1.78 -1.39 -1.3 -1.52 -4.95 0 -0.41 0.98 -7.34 0.09 -2.43 0.39 -5.03
--2.15 -4.69 -3.36 -3.3 -2.96 -3.86 -3.34 -3.43 -5.8 -0.22 -0.15 0.02 -5.41 -0.83 -3.37 0.79
--3.53 0.26 -5.34 -0.85 -0.59 0.21 -3.97 4.88 -4.6 -1.12 -3 -3.71 -0.63 -2.61 4.34 -4.47
-4.47 -4.38 4.04 -4.78 0.09 -0.04 5.49 0.71 4.84 0.09 1.02 0.17 6.73 -0.91 0.67 -0.11
-6.6 -2.48 1.17 -0.65 5.09 -2.11 2.87 -0.5 5.75 0.04 0.39 -0.07 6.12 -2.38 1.74 -0.07
-4.38 2.5 4.77 -0.2 1.3 0.26 3.17 4.14 4.41 -4.04 3.36 1.78 2.41 5.17 0.05 0.11
--0.11 -0.02 -2.21 -0.32 -3.32 -0.5 -4.73 -1.67 -0.28 0.09 -6.23 2.19 -3.09 2.11 -2.8 0.89
--0.15 -0.02 -3.69 -0.22 -5.08 -0.08 -0.29 7.07 0.32 2.54 0.69 3.95 2.48 4.51 2.78 4.13
-0.37 5.9 -0.17 1.09 0.98 5.93 3.32 3.23 3.87 2.67 -0.59 7.32 0 4.34 -2.87 -1.41
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--1.02 -0.17 -4.84 -0.09 -5.49 -0.71 -0.09 0.04 -4.04 4.78 -4.47 4.38 f*
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--4.39 4.47 -3.04 0.83 f*
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-7 193 59 rG
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--2.49 -1.26 -1.7 -4.16 -0.22 -1.52 1.15 0.65 2.8 3.2 0.45 3.1 0 3.06 1.78 -0.02
-0.98 -3.34 -0.79 -5.04 -2.95 -3.05 -3.41 -2.7 f*
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--2.78 -3.34 -2.47 -3.64 -2.08 -4.08 -2.11 -4.14 f*
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--6.27 0.59 f*
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-2790.67 3174.39 -1.11 -1.29 0.39 1.91 0.63 0.09 0.09 -0.71 f*
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-255 0 r6
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-255 G
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-11.85 -7.68 -1.56 1.15 -9.2 6.58 -9.31 6.4 -9.44 6.27 -9.53 6.07 -9.66 5.92 -9.74 5.75 f*
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--1.19 -4.54 -1.02 -4.75 0.39 -3.39 2.87 0.61 3.36 2.84 2.41 1.54 1.65 0.7 -0.87 1.65
--4.88 5.66 0 1.78 0.54 0.09 5.32 -4.36 4.41 -7.14 3.08 -4.25 -3.73 2.37 -1.52 -0.37
--2.89 -0.71 -3.69 -2.45 -0.07 -0.05 -3.27 -2.93 -4.04 1.87 -0.7 2.28 f*
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--12.02 7.18 f*
-255 203 0 rG
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-1.91 3.5 -0.54 0.65 0 1.78 0.57 0.07 4.88 -5.66 0.87 -1.65 -1.65 -0.7 -2.41 -1.54
--3.36 -2.84 -2.87 -0.61 f*
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--0.02 1.17 -3.93 2.39 -1.65 0.84 -3.76 -1.91 -1.99 -4.14 f*
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--12.08 8.77 -12.07 8.79 f*
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-1.11 -0.2 0 -19.8 -0.41 -0.56 -3.78 -2.8 -1.65 -5.17 0.55 -2.86 4.03 -6.1 2.37 1.02
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--4.29 1.17 0 19.8 0.43 -0.09 0.67 -1.89 2.91 -7.36 3.5 -5.89 0.65 -1.15 0.54 -0.11
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--4.21 3.89 -0.76 0.41 -0.3 0.8 f*
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--1.33 -5.62 1.74 -3.25 0.79 0.34 2.75 4.06 5.68 -0.02 0.48 0.17 0.48 1.96 -5.32 3.64
--0.14 0.02 0 4.57 1.87 -0.5 1.65 -0.93 4.32 -1.15 -0.54 -3.08 -1.59 -5.41 -1.8 -0.59
--3.97 0.02 -3.13 -3.66 -2.37 -1.02 -4.03 6.1 f*
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--5.68 0.02 -2.75 -4.06 -0.79 -0.34 f*
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--3.99 3.65 -8.46 7.51 -8.59 7.36 -8.73 7.2 -8.85 7.05 -8.98 6.88 f*
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--1.78 6.41 f*
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--11.67 -10.52 f*
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-2916.21 3396.75 -0.89 0.82 0.52 -0.43 0.37 -0.39 f*
-255 G
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--11.34 11.72 -11.33 11.74 f*
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--0.17 7.3 5.23 -7.14 5.12 -7.32 5.04 -7.48 4.9 -7.68 0.09 7.4 4.95 -7.88 4.84 -8.09
-4.71 -8.27 -0.5 -7.27 4.45 -8.42 -0.84 -7.03 -4.32 8.33 -4.43 8.18 -2.08 3.63 -2.47 4.36
--4.69 7.83 -0.54 -7.07 -4.66 7.64 -4.77 7.44 -4.88 7.29 -0.39 -6.96 -4.88 7.11 -4.95 6.95
--0.39 -6.86 -4.95 6.8 -5.03 6.64 0.17 6.83 -5.23 6.49 -5.32 6.32 f*
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-1.86 5.27 1.52 4.97 9.41 12.24 9.18 12.65 8.89 13.02 0.39 4.14 0.11 3.87 -8.38 -12.66
-0.11 3.8 8.14 12.43 7.86 12.74 -0.59 3.11 7.32 12.78 7.03 13.05 -1.22 2.39 6.49 13
--1.54 1.91 -1.72 1.74 -1.84 1.56 -1.97 1.39 -2.11 1.26 -5.66 -11.77 -2.09 1.35 -2.21 1.19
--5.66 -11.18 -2.2 1.28 -2.3 1.15 -5.66 -10.68 -2.3 1.21 -2.41 1.11 -2.52 1 -5.54 -10.03
--2.52 1.05 -2.62 0.95 5.3 9.72 -2.82 0.72 4.97 9.65 4.75 9.75 4.54 9.83 4.32 9.92
-4.08 9.96 3.87 10.02 -3.46 -0.34 3.58 9.89 3.35 9.94 3.12 9.98 2.89 10 2.67 10.02
-2.47 10.03 2.24 10.05 3.77 1.63 2.04 10.22 3.75 1.8 3.67 1.8 1.85 10.63 3.64 2.02
-3.56 2.02 3.49 2.04 1.63 11.26 3.45 2.28 1.37 11.46 1.11 11.41 0.85 11.37 3.34 3.04
-0.54 11.57 0.3 11.48 3.19 3.58 3.11 3.67 -0.07 11.91 2.97 4 0.13 -12.16 2.95 3.82
-2.88 3.93 -0.26 12.72 -0.57 12.61 -0.87 12.5 2.54 4.88 2.41 5.05 2.32 5.21 2.19 5.38
-1.28 -13.7 0.93 -13.87 0.61 -14.02 0.21 -14.15 2.5 4.13 -0.07 -14.64 2.48 3.82 2.41 3.95
--0.37 -15.62 2.38 3.58 2.3 3.69 0.22 16.61 -0.29 16.45 -0.74 16.28 -1.2 16.06 -1.65 15.82
-1.54 6.29 -2.26 16.02 -2.69 15.73 -3.11 15.41 -3.45 15.08 -0.65 -7.88 -0.87 -7.57 -3.32 14.08
--0.87 -7.59 -1.04 -7.29 -3.21 13.2 -3.52 12.93 -3.77 12.65 -0.65 -7.77 -3.82 12.15 -0.67 -7.73
--2.41 7.32 -1.43 4.38 -0.71 -7.66 -0.91 -7.4 -3.71 11.09 -3.18 8.79 -0.75 2.06 -0.76 -7.48
--3.95 10.5 0.61 7.62 0.37 7.86 4.3 -10.76 4.1 -11 0.5 7.84 0.26 8.07 0 8.38
--4.73 11.48 -0.52 8.83 4.97 -11.63 -0.61 8.98 -0.91 9.33 5.25 -12.33 -0.99 9.51 -1.35 9.87
--1.75 10.29 5.92 -13.28 5.66 -13.71 -1.5 10.3 -1.95 10.74 -2.41 11.26 -2.93 11.79 -3.52 12.37
-7.42 -15.43 3.04 -12.13 2.52 -11.54 2 -11 5.82 -15.19 5.47 -15.71 5.1 -16.19 -0.81 9.96
-5.08 -17.14 0.43 -9.53 0.11 -9.05 -4.34 16.28 -4.76 15.82 0.48 -9.39 0.17 -8.98 4.11 -15.08
-3.73 -15.45 3.37 -15.84 2.91 -16.17 2.5 -16.47 2.02 -16.8 1.54 -17.05 1.63 5.8 1.21 -17.89
-0.65 -18.11 0.07 -18.32 -0.5 -18.46 2.04 3.49 -1.06 -19.29 2 2.86 -1.7 -20.1 1.93 2.11
--2.45 -20.94 1.8 1.23 1.73 1.15 1.65 1.05 -3.56 -23.7 -1.52 -0.04 -4.3 -22.54 -5.14 -22.36
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-4.1 7.77 -11.72 -14.45 -11.87 -13.72 f*
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--2.22 7.46 -2.36 7.38 -2.46 7.33 3.5 4.63 2.54 -7.38 2.41 -7.46 3.54 4.62 2.36 -7.62
-2.24 -7.68 2.08 -7.75 1.97 -7.81 1.82 -7.9 1.7 -7.96 3.82 4.23 3.73 4.34 1.67 -8.22
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--4.03 -3.86 -4.11 -3.76 -1.09 8.12 -1.21 8.05 -4.1 -3.86 -1.3 7.9 -1.46 7.86 -1.56 7.79
--4.04 -4.04 -1.67 7.64 -1.78 7.59 -4.02 -4.1 -1.86 7.44 -4.04 -4.08 -1.93 7.33 -4.08 -4.08
--2 7.21 f*
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-2977.95 3329.91 -8.22 10.68 5.14 -5.41 13.15 -17.51 13.17 -17.52 13.13 -17.49 -12.12 15.76 -12.11 15.73
--12.13 15.76 f*
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-3.3 -8.44 3.14 -8.57 2.99 -8.71 2.32 5.82 2.96 -8.91 -2.43 -5.71 2.69 -8.96 2.52 -9.07
--2.76 -5.34 2.26 -9.07 2.11 -9.18 -0.22 -0.32 -2.84 -4.64 -3.15 -4.86 -3.26 -4.73 -3.36 -4.64
--1.78 8.7 -3.41 -4.62 -1.86 8.5 -2.02 8.44 -2.16 8.33 -3.28 -4.82 -2.24 8.16 3.21 4.91
-3.11 5.04 -2.54 8.22 2.89 5.25 -2.78 8.22 2.69 5.43 -2.99 8.2 -3.15 8.09 2.34 5.73
--3.36 8.03 2.11 5.92 f*
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-3.54 4.23 1.06 -9.39 -3.61 -4.09 -3.67 -3.99 -3.77 -3.93 -3.85 -3.82 -3.93 -3.75 -0.78 8.72
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-3082.83 3069.08 -0.78 10.02 5.05 -18.14 0.37 -9.53 -4.64 17.64 f*
-Q q
-0 72 3400 0 0 4128 ^ Y
-255 G
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-11.16 1.87 5.55 1.04 5.56 1.02 5.53 1.13 5.55 1.13 5.51 1.23 5.54 1.22 10.98 2.65
-5.47 1.41 5.49 1.43 5.45 1.5 5.45 1.52 10.85 3.21 5.38 1.71 5.41 1.7 10.72 3.6
-5.32 1.89 5.34 1.89 5.3 1.97 5.29 2 5.27 2.06 5.25 2.09 5.23 2.17 5.21 2.17
-10.38 4.52 5.16 2.34 5.14 2.34 5.1 2.45 5.1 2.43 5.05 2.52 5.06 2.54 5.04 2.61
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-4.35 10.46 4.14 10.52 3.95 10.62 3.77 10.67 3.61 10.75 3.38 10.8 3.21 10.85 3.04 10.91
-2.82 10.96 P
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-1.09 11.28 0.89 11.29 0.7 11.3 0.49 11.31 0.26 10.22 0 24.84 -0.26 10.22 -0.49 11.3
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-0.08 4.45 1.24 3.11 -1.45 3.54 -0.8 7.03 -1.3 4.38 -0.46 5.23 -1.15 5.16 0 44.03
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--1.19 4.04 -3.47 5.12 0 174.92 -1.59 2.02 -2.62 3.3 -2.62 3.28 -2.65 3.21 -2.62 3.19
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--1.8 5.36 -0.93 4.82 -1.29 5.99 -1.15 4.36 -1.91 6.2 -3.26 7.68 0 16.17 -1.43 1.57
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--2.65 2.89 -2.63 2.84 -2.62 2.8 -2.63 2.75 -2.61 2.73 -2.62 2.69 -1.59 1.63 0 -182.53
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-2.69 -2.78 0.93 1.17 -1.3 3.71 0 1.93 0.93 1.08 1.32 1.54 0.48 -2.56 1.82 -1.59
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-0.63 1.63 0 6.9 -1.55 0.76 -1.41 -0.48 1.64 -5.32 -1.08 -1.91 -2.19 3.11 -1.63 4.23
--1.41 0.02 1.71 -2.91 -1.91 -0.32 -2.65 3.19 -2.23 2.56 -3.13 3.6 1.05 1.52 -2.72 3.49
--3.21 5 -2.25 1.86 -2.32 3.76 -2.82 4.25 -0.48 2.75 1.34 0.67 0.39 1.81 -1.54 3.93
-0 182.53 -1.52 1.54 -6.3 6.3 -3.19 3.11 -1.61 1.56 0 -243.36 1.65 -2.14 1.3 -3.76
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--1.02 4.51 0.09 2.46 0.56 2.32 0.52 2.34 0 243.36 -1.61 1.54 -3.23 3.09 -3.25 3.04
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--3.17 4.58 -2.62 3.63 -2.78 4.05 -1.87 4 0.8 0.89 0 182.23 -1.41 1.21 -3.41 2.91
--3.45 2.89 -3.45 2.86 -3.47 2.82 -2.93 2.37 -2.97 2.37 -3 2.36 -3.05 2.37 -3.08 2.39
--3.14 2.37 p
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--1.79 1.08 -1.8 1.09 -1.82 1.11 -1.87 1.11 -1.87 1.13 -3.86 2.25 -1.98 1.13 -1.99 1.15
--2.02 1.17 -2.07 1.15 -2.1 1.17 -2.13 1.2 -2.15 1.17 -2.19 1.2 -2.24 1.19 -2.25 1.22
--2.28 1.21 1.63 -0.84 1.63 -0.87 1.67 -0.89 1.67 -0.91 1.7 -0.92 1.71 -0.93 1.71 -0.95
-1.74 -0.95 1.76 -0.98 1.78 -1 3.61 -2.04 1.82 -1.04 1.84 -1.09 1.87 -1.09 1.5 -0.87
--4.88 2.88 -4.92 2.78 -4.91 2.78 -4.97 2.71 -4.97 2.7 -5.01 2.63 -5.04 2.6 -5.06 2.54
--5.05 2.52 -5.1 2.46 -5.1 2.43 -3.78 1.72 0 -130.04 4.28 -0.98 3.64 -1.82 2.8 -0.5
-1.82 -1.91 2.37 -1.04 3.02 -0.33 4.26 -1.2 2.78 -1.58 4.32 -1.34 2.13 0.11 3.14 -2.06
-2.65 -1.06 4.17 -3.39 -4.32 1.52 2.76 -1.72 2.07 -2.49 5.64 -2.64 -2.82 0.24 5.79 -4.06
-3.17 -4.21 -1.07 -1.54 3.19 -2.04 1.45 0.43 4.95 -4.02 4.95 -3.52 0.57 -1.5 -1.84 -0.13
-0 -2.34 2.06 -0.48 2.84 -2.48 3.1 -2.26 -0.72 -0.98 2.74 -3.1 2.23 -1.65 2.78 -1.87
-0.26 -2.06 -2.97 0.7 -2.93 2.93 -2.78 1.82 -0.93 2.3 -3.05 2.24 -2.13 2.78 -0.5 2.11
-0 2.34 -0.21 -0.02 -2.85 1.11 -4.03 2.78 1.95 -2.93 0.83 -1.91 3.6 -3.61 1.84 -2.34
-2.95 -3.43 2.28 -3.21 3.22 -2.66 0.84 -2.3 2.11 -3.2 1.3 0 -1.35 2.56 2.65 -0.87
-2.21 -0.09 3.54 -2.66 4.12 -3.02 3.69 -2.23 3.84 -4.34 0.29 -2.47 -2.88 1.56 -2.82 1.48
--2.54 2.61 -2.89 1.45 -1.65 -0.15 2.48 -1.54 1.02 -2.17 -2.82 0.46 -2.93 3.38 -3.32 3.21
--1.93 2.84 -2.82 1.29 -2.52 3.04 -2.87 2.8 -3.71 3.45 -4.12 3.23 -1.5 2.47 -2.89 3.93
--2.8 3.54 -2.47 3.06 0.29 1.47 -2.32 2.04 -2.82 0.93 -3.52 2.34 -4.04 2.52 -3.16 1.21
--3.26 2.47 3.5 -1.61 2.28 -0.67 -3.88 3.3 -3.41 3.12 -3.3 2.37 -3.78 1.87 -3.71 2.71
--4.05 1.52 -4.17 2.06 -3.49 1.3 -3.35 0.59 -2.73 0.45 -2.23 0.34 -4.64 1.89 0.24 1.21
--1.7 1.73 -1.65 0.22 1.37 -1.39 -2.5 0.61 -1.34 2.34 2.54 -0.65 2.37 0.04 1.25 1.05
-2.56 0.28 0 130.04 -1.39 0.63 -5.14 2.34 -10.38 4.52 -5.21 2.16 -5.23 2.18 -5.25 2.08
--5.27 2.06 -5.29 1.99 -5.3 1.98 -5.34 1.89 -5.32 1.88 -10.72 3.61 -5.41 1.7 -5.38 1.71
--10.85 3.21 -5.45 1.52 -5.45 1.49 -5.49 1.43 -5.47 1.41 -10.98 2.65 -5.54 1.21 -5.51 1.24
--5.55 1.13 -5.53 1.13 -5.56 1.05 -5.55 1.02 -11.16 1.87 -5.6 0.85 -5.59 0.82 -11.2 1.48
--11.24 1.3 -5.64 0.52 -5.62 0.54 -5.64 0.45 -5.64 0.44 -11.28 0.7 -5.64 0.25 -5.64 0.24
--5.66 0.16 -2.04 0.04 0 -0.11 2.54 -0.07 2.52 -0.08 1.04 -0.02 1.21 -0.05 0.26 -0.02
-2.5 -0.09 2.13 -0.08 6.1 -0.29 6.07 -0.34 6.07 -0.39 6.08 -0.46 6.06 -0.5 6.01 -0.58
-6.04 -0.61 5.99 -0.68 5.99 -0.73 5.95 -0.79 5.95 -0.84 5.92 -0.89 5.88 -0.95 5.86 -1
-5.84 -1.05 p
-5.8 -1.08 6.18 -1.24 6.2 -1.28 6.21 -1.34 6.23 -1.43 6.23 -1.5 6.25 -1.56 6.25 -1.63
-6.25 -1.69 6.25 -1.76 6.25 -1.82 6.27 -1.91 6.25 -1.97 6.25 -2.04 6.23 -2.11 6.23 -2.18
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-3.91 -1.89 4.23 -2.23 2.14 -2.23 4.35 -2.02 3.66 -1.45 2.45 -0.46 1.72 -2.91 0.74 -2.52
-2.6 -2.06 2.8 -1.78 -0.09 -0.89 1.37 -1.39 1.95 -0.5 -0.58 1.58 -0.07 1.52 3.43 -2.54
-3.67 -2.3 -3.82 0.5 -0.63 -0.82 -2.5 0.61 -4.53 2.61 -1.8 -0.16 -1.15 1.63 -2.04 1.98
--1.93 0.43 -1.8 -0.15 -2.93 1.37 -2.47 0.45 -3 0.41 -2.15 -0.82 -3.28 1.58 0.42 1.47
-1.21 1.2 0.18 1.22 -0.44 2.13 -1.56 2.19 -1.73 1.86 -5.04 2.43 4.59 -1.17 -0.11 0.93
-1.52 0 -3.28 2.19 0 129.8 -0.41 0.17 -6.08 2.23 -6.1 2.22 -6.14 2.12 -6.14 2.06
--1.91 0.63 0 -129.47 5.67 -1.96 5.17 -2.14 4.75 -1.91 -5.82 1.52 -4.34 1.55 -1.54 1.45
--3.89 1.5 0 129.47 -0.56 0.17 0 -146.57 0.87 -1.95 1.95 -1.59 2.8 -0.93 2.34 -0.15
-3.52 -0.65 3.37 -0.13 1.34 0.65 0.22 1.17 1.67 0.35 -0.35 1.19 3.06 0.11 -0.29 -1.52
-1.15 -1.48 2.89 -1.15 4.1 -0.89 -3.12 -0.87 -3.58 0.84 -3.58 -0.06 -3.25 0.49 -2.41 -0.7
--0.87 -0.62 -2.67 0.45 -2.84 0.11 -3.04 -0.22 -2.72 -0.5 -3.29 -0.02 -2.21 -0.48 -0.78 -1.2
--2.99 -0.32 -3.54 0.11 -3.15 -0.67 -3.19 1.17 -2.32 0.46 -1.59 -1.06 -1.89 1.04 1.04 1
-2.61 0.7 2.28 0.93 2.91 0.43 3.26 0.15 1.99 1.13 2.29 0.87 2.3 0.87 3.91 2.17
-1.82 0.76 0 146.57 -3.71 1.21 -6.21 1.95 -2.04 0.64 0 -128.65 6.14 -1.69 2.11 -1
--4.8 1.26 -3.45 1.43 0 128.65 -4.19 1.28 -6.25 1.82 -6.27 1.76 -6.29 1.71 -6.3 1.63
--6.32 1.58 -6.31 1.5 -4.95 1.13 0 -132.27 4.26 -1.2 -1.24 -0.52 -3.19 0.91 -3.56 0.29
-1.11 0.52 2.63 0 0 132.27 -1.36 0.33 -7.25 1.56 -7.25 1.47 -7.23 1.39 -7.21 1.33
--2.56 0.43 0 -136.98 3.71 -1.37 4.23 -0.28 3.08 1.06 4.88 0.3 4.73 -0.3 4.75 -0.74
--0.56 -1.06 -1.82 -0.89 -1.76 -1.24 -0.87 -1.97 -2.13 -1.43 -1.73 -1.67 -1.05 -1.24 -1.39 -1.47
--1.43 -1.11 -2.82 -1.2 -3.15 -0.74 -3.12 -0.78 -3.5 0.74 -3.04 -0.52 -0.59 -1.13 -2.78 1.09
--4.04 0.5 -4.62 -0.02 -4.21 -0.2 -3.11 -0.67 -4.77 -0.12 -3.95 -0.43 -2.41 -0.66 -3.69 0.07
--3.73 0.39 -1.93 -0.84 -2.24 -1.71 -1.93 -1.5 -3.16 -0.21 0.78 -0.87 4.78 -0.55 2.41 1.05
-1.17 1.32 2.8 -0.41 3.19 0.39 3.58 0.26 4.3 0.02 -0.17 -1.35 -0.79 -1.11 -3.75 -1.18
-3.58 -0.5 1.89 -1.3 3.54 -0.93 4.18 -0.82 3.67 0.32 3.73 0.33 4.04 -0.24 3.54 0.3
-3.3 0.73 -2.11 1.29 -0.26 1.2 4.79 -1.72 2.11 -1.37 2.25 -0.28 4.14 -1.26 2.43 -1.21
--0.26 -1.02 -3.26 0.5 0.07 -1.17 2.13 -0.71 1.91 -1.39 1.5 -1.61 2.08 -0.75 1.47 0.37
-1.13 0.17 p
-1.84 -1.43 2.91 -1.3 2.15 -2.17 3.17 -0.72 0.24 -0.97 2.87 -1.87 3.1 -2.11 2.78 -1.63
-0.67 -0.39 3.39 -1.11 2.84 -0.28 3.41 -1.2 3.19 -0.57 2.87 -0.39 3.16 -1.12 3.89 -1.33
-3.47 -0.95 4.69 -1.09 4.41 -1.47 3.97 -1.61 4.39 -1.61 0.82 -0.46 2.8 -1.57 1.34 0.3
--0.78 1.95 -2.63 2.07 2.54 0.17 2.63 0.13 -3.82 1.02 -2.25 1.63 2.61 0.2 3.05 -0.84
--3.84 2.57 -4.86 1.38 -2.08 1.87 -0.7 1.19 0 -5.62 4.06 -1.15 -0.57 -1.02 -2.82 0.5
--0.67 1.67 0 5.62 -0.43 0.76 1.24 0.41 -0.16 1.57 -0.45 1.8 3.37 -0.41 2.45 0.28
-0.63 0.87 2.91 -0.52 3.62 -0.78 3.43 -0.59 3.34 -0.07 2.8 0.41 3.57 0.15 3.21 -0.5
-3.69 -0.48 1.15 -0.48 4.4 -1.8 4.95 -1.8 1.07 -0.46 3.38 -1.43 4.63 -1.11 3.86 -1.41
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-2.67 -1.29 2.71 -2.8 4.66 -3.12 1.48 -0.15 3.43 -1.07 2.13 -2.19 3.53 -2.97 2.89 -2.8
-2.06 -2.24 1.71 -2.45 1.34 0.13 2.63 -1.63 0.59 1.59 1.3 1.02 2.3 0.02 1.48 0.63
-2.06 0.43 3.04 -0.63 3.21 -1 3.43 -1.47 3.11 -1.7 3.41 -2.49 3.06 -3.64 2.28 -4
-2.3 -3.38 3.49 -4.06 -2.89 0.52 -3.41 1.69 -3.69 3.43 -3.43 0.68 -3.37 0.3 -1.71 2.98
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-0.16 -1.54 -0.04 -2.12 1.54 -2.78 1.95 -2.67 2 -3.04 2.78 -2.54 2.41 -2.99 1.09 -2.06
--3.5 3.54 -1.73 -0.43 -1.91 1.52 -2.3 2.59 -3.32 2.66 -2.26 -0.2 0.35 -2.58 2.86 -2.78
-3.3 -3.02 1.76 -2.67 2.26 -2.93 2.39 -1.83 1.93 -1.91 1.21 -2.8 -0.71 -1.21 2.47 -2.56
-2.32 -1.58 1.87 0.28 1.26 0.89 1.15 1.28 2.67 -1.13 1.21 0.91 -0.45 1.89 -1.93 2.02
--2.04 2.37 -1.74 2.82 1.24 0.65 -0.02 1.58 -0.7 2.26 -0.11 1.95 3.71 -2.86 -0.67 -0.91
-2.34 -3.15 1.98 -3.66 2.91 -2.23 2.21 -3.22 2.78 -3.6 2.4 -2.43 2.97 -2.82 1.07 1.69
-1.04 1.72 3.09 -1.22 2.49 -0.87 2.56 -0.98 2.65 -1.34 0.67 0.93 1.76 0.61 2.5 -0.97
-0.63 -2.87 2.09 1.04 2.06 -1.02 1.04 -2.5 1.37 -2.37 1.85 -2.39 1.04 -2.88 0.71 0.89
--1.06 3.28 0.75 0.91 0.07 1.71 1.7 -1.56 3.82 -3.11 0.26 -1.28 3.36 -3.28 1.52 -0.78
-1.73 -2.07 0.28 -1.73 2.34 -2.97 2.76 -3.37 2.8 -3.43 2.25 -3.43 -0.3 -1.26 2.54 -1.8
-2.06 -2.19 2.67 -3.56 2.11 -3.08 1.61 -3.14 2.56 -3.17 0.11 -2.56 1.95 -1.87 1.52 -3.19
-1.93 -3.99 1.43 -3.61 1.91 -4.54 1.32 -3.99 0.3 -3 0.3 -2.95 -0.22 -2.47 2.15 -4.17
--2.54 0.11 2.63 -3.86 -2.02 -0.02 2.62 -3.45 0.55 -3.45 0.04 -2.89 0.89 -3.93 -0.11 -3.23
-0.39 -3.41 1.5 -2.87 2.37 -1.52 0.58 -2.26 -0.37 -1.52 -2.28 1.91 -1.32 1.22 -2.02 3.01
--0.37 -1.52 -1.71 -0.34 -0.56 -2.26 0.24 -3.32 0.7 -3.47 0.54 -3.8 1 -3.9 1.63 -3.8
-0.76 -4.32 p
-1.67 -3.45 1.98 -4.02 3.17 -2.37 2.2 -0.47 1.61 -1.83 2.54 -1.04 2.37 -1.3 2.66 -0.68
-2.11 -0.43 2.39 -1.41 2.47 -1.11 2.8 -3.34 2.41 -2.8 2.23 -3.26 2.08 -3.64 1.73 -3.08
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-2.11 -4.47 0.67 -4.55 -0.84 -2.76 0.15 -4.21 0.09 -4.23 -1.75 2.45 -1.65 3.8 -1.31 4.47
--1.75 -0.76 -1.72 1.45 -1.39 -2.34 -2.17 0.85 -2 2.02 -1.88 2.39 -1.74 1.39 -1.39 -0.09
--2.49 1.37 -1 -1.63 -1.5 -1.36 -2.04 4.12 -1.82 -0.76 -0.45 -2.82 1.8 -4.43 2.28 -4.78
-0.91 -3.6 1.2 -4.23 0.41 -3.41 1.37 -4.82 1.78 -4.25 1.93 -3.1 1.17 2.45 2.21 -4.66
-1.89 -1.24 1.91 -3.14 2.11 -3.8 1.65 -0.67 1.86 1.45 2.07 -1.93 2.1 -1.06 2.07 -1.02
-2.04 -1.06 2.25 -2.67 1.32 -3.99 1.26 -4.02 1.24 -4.02 1.19 -4.06 1.76 -1.56 2.28 -3.56
-1.78 -4.19 -2.19 -2.67 -1.52 0.89 -1.8 0.56 -2.04 0.29 -1.71 1.5 -2.23 0.91 -1.41 3.67
--2.21 1.89 -2.2 2.73 -0.96 4.23 -1.56 1.69 -1.76 4.25 -1.07 3.14 -1.08 2.17 -1.2 1.46
--1.87 1.32 -1.84 1.3 -0.24 0.26 0 -22.48 2.08 -1.09 1.76 -2.39 2 -2.12 2.04 -1.13
-2.13 -0.25 2.28 -0.87 2.11 -2.84 2.36 -2.56 1.37 2.36 2.61 -2.3 1.67 1.07 2.32 -2.63
-1.43 0.7 0.76 -4.41 1.28 1.46 2.06 -2 0.57 -3.8 0.02 -4.38 1.61 -1.67 1.8 2
-1.68 -5.17 1.48 -1 1.17 -3.02 1.52 1.7 1.59 -1.82 -0.46 3.95 -1.17 1.32 -1.65 -1.02
-0.15 3.8 1.35 2.43 1.65 -3.49 1.21 -3.09 1.13 0.43 0.59 -4.69 -2.8 0.35 1.28 -2.04
-0.02 -5.25 0.96 -5.92 0.65 -4.45 0.44 -5.45 0.32 -4.73 -1.61 0.93 -1.32 -1.26 -0.29 -2.73
--1.24 0.5 -1.91 3.11 -2.02 1.34 -2.78 2.28 -1.86 2.34 -1 2.28 -2.08 1.26 -2.2 3.64
--2.08 2.91 -0.91 3.11 -2.02 3.84 -0.93 3.11 -2.08 2.08 -1.13 2.13 -1.07 0.06 0 -10.8
-2.56 -4.82 -1.02 -1.7 -1.21 1.26 -1.02 3.82 0.7 1.43 0 10.8 -1.25 0.09 -1.78 4.82
--1.76 3.17 -0.63 2.63 -2.3 1.04 -1.43 0.21 0 -8.16 2.59 -2.37 0.74 -3.34 -2.13 1.99
--1.71 1.56 0.52 2.15 0 8.16 -0.7 0.11 -1.52 3.39 -2.21 1.8 -1.97 2.15 -1.29 -0.5
--2.69 2.19 -2.28 1.85 -1.74 2.34 -1.43 3.45 1.91 1.96 2.08 -1.2 1.89 1.97 2.28 1.63
-0 22.48 -2.13 2.28 -2.37 1.65 -0.25 -2.17 -1.67 2.52 -1.41 3.69 -0.98 5.16 -1.78 4.32
--1.54 3.63 -0.32 3.32 -1.34 3.02 -2.28 2.66 -1.23 5.06 -2.41 3.45 -1.06 1.08 0 -541.79
--1.93 -2.63 -1.95 -2.62 -3.11 -3.69 -3.17 -3.69 -1 -1.52 -1.04 -1.55 -0.02 -0.58 -0.02 -0.61
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--0.71 -0.45 -2.21 -1.71 -2.2 -1.67 -2.95 -2.37 -2.95 -2.32 2.47 2.41 2.45 2.41 -1.43 -0.87
--1.41 -0.85 -1.82 -1.17 -1.82 -1.15 1.66 1.91 1.63 1.89 2.5 2.52 2.45 2.54 2.45 2.32
-2.43 2.32 2.82 2.62 2.82 2.65 2.11 1.97 2.13 1.98 2.91 2.93 2.88 2.93 3.71 3.67
-3.69 3.73 p
-2.93 2.86 2.93 2.93 0 541.79 -1.8 1.82 -2.45 3.38 -2.17 2.87 -2.3 3.62 -2 3.11
--2.28 2.75 -2.37 1.56 -1.45 -0.08 0.82 -2.91 -0.39 -3.54 -0.2 -3.23 0.28 -3.43 -1.13 -1.52
--1.17 -0.65 -2.23 -0.11 -1.29 3.93 -1.67 4.49 -2.32 3.56 -2.56 3.17 -2.28 2.66 -0.89 -1.21
--2.21 1.8 -0.5 2.23 -2.25 1.78 -0.84 -1.17 -1.91 1.2 -2.69 1.17 -2.43 1.43 -2.06 2.02
--1.82 2.34 -2.06 1.96 -0.63 0.34 0 -118.21 2.96 -0.65 2.34 -2.46 2.3 -2.49 1.96 -2.73
-2.11 -1.98 1.11 -3.97 0.3 -3.87 -1.04 -3.38 -2 -2.67 -1.7 -1.08 -1.71 2.21 -1.86 4.05
--1.11 2.65 -1.09 3.93 -0.5 3.06 -0.65 3.61 0.11 3.49 -1.52 2.28 0 118.21 -1.87 1.09
-0 -3.78 0.09 -2.73 0.41 -3.23 -1.04 -2.21 -1.09 -2.19 -1.04 -2.24 -0.89 -1.91 -2.61 3.08
-0.74 -2.61 -0.59 -2.45 -0.86 -2.63 0.74 -2.64 1.41 -1.78 0.71 -3.45 0.41 -3.64 -0.96 -2.67
--1.04 -1.84 -0.2 -3.47 0.28 -2.87 0.31 -3.69 -0.33 -3.41 -0.82 -2.32 -0.37 -2.62 0.13 -3.62
--0.67 -2.87 -0.37 -1.82 0.95 -2.93 -0.15 -2.34 -1.54 -2 -0.93 -1.45 0.56 -3.21 -2.3 -1.13
-0.21 -3.36 0.79 -2.97 1.82 -3.5 1.8 -3.62 1.74 -3.59 1.11 -4.02 0.24 -3.99 0.04 -3.45
-1.13 -3.32 1.23 -2.56 1.26 -3.86 -1.93 -1.35 -0.24 -4.21 1.02 -3.34 -1.5 -1.63 -1.15 -2.73
-0.46 -4.38 -1.23 -2.73 -1.98 0.11 -1.97 1.35 -2.15 1.95 -1.8 3.41 -1.8 3.5 -1.7 2.84
--1.71 2.84 -1.84 2.04 -2.21 1.89 -1.89 2.08 -1.96 3.32 -1.75 2.8 -1.8 2.78 -1.45 2.99
--2.52 2.32 -2.47 2.32 -2.19 2.52 -1.67 2.21 -1.76 3.43 -1.56 2.93 -2.13 3.17 -2.2 3.23
--0.21 2.47 -1.32 1.11 -1.93 2.67 -1.06 3.27 -1.32 3.73 -2.11 1.93 -1.48 2.35 -1.15 3.23
--1.15 -0.17 0.61 -2.95 1.3 -3.73 -0.61 -3.06 -1.43 -2.28 -2.26 -1.48 -2.6 0.29 -2.7 1.54
--2.21 1.15 -2.3 2.41 2.23 1.43 1.43 2.26 -0.82 3.4 -1.7 -2.45 -2.19 -1.43 -2.82 0.76
--2.47 1.69 -2.25 0.5 -2.39 -0.19 -1.47 2.21 -1.8 2.11 -1.99 0.67 -1.89 1.35 -0.28 -0.07
-0 -299.69 1.07 -0.83 -0.35 -2.09 -2.08 -0.36 1.37 3.28 0 299.69 -1.87 -0.57 -1.67 -1.69
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-2.17 0.91 p
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-2.09 0.22 2.06 0.21 0.24 0.09 0.24 0.11 0.21 0.09 0.24 0.11 2.73 0.24 2.74 0.28
-2.75 0.26 2.71 0.29 6.73 0.87 3.3 0.45 0.95 0.2 0.93 0.22 0.91 0.19 -1.07 -0.06
--1.08 -0.05 -1.07 -0.04 1.24 0.3 2.39 0.65 1.91 0.39 1.86 0.41 1.85 0.39 2.65 0.61
-1.3 0.31 1.78 0.41 1.73 0.43 1.71 0.41 3.91 0.67 3.86 0.72 3.82 0.71 3.54 0.54
-3.56 0.56 3.56 0.59 -0.85 -0.33 -0.89 -0.32 -0.89 -0.3 0.09 -0.2 0.08 -0.21 0.09 -0.18
-2.06 0.26 2.11 0.31 2.13 0.3 3.62 0.67 3.61 0.7 3.62 0.71 3.71 0.76 7.38 1.61
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-3.71 1.18 3.49 1.15 3.52 1.17 3.52 1.21 3.54 1.24 2.14 0.72 4.39 1.48 2.23 0.78
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-0.19 3.29 0.2 3.82 -0.91 2.28 0.07 2.84 0.34 2.38 2.23 3.65 2.13 2.62 1.19 2.56
-2.18 3.17 0.74 2.52 -0.89 3.21 0.3 2.47 -0.93 3.21 -0.07 3.34 2.04 3.21 1.73 4.62
-2.22 0.35 2.78 1.91 2.71 1.43 2.78 1.93 2.28 1.84 2.43 3.38 2.22 0.37 -0.29 2.45
-1.89 1.82 -0.26 2.91 2.65 0.98 2.26 1.43 0.56 2.54 0.18 3.04 2.32 2.95 0 179.23
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--2.09 -2.9 p
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--1.8 2.97 1.3 0.05 1.47 1.32 -0.02 3 -1.39 2.95 -1.54 2.11 -1.08 2.13 -0.52 2.99
--1.11 2.15 -0.61 2.99 -1.56 2.13 -2.54 1.63 -1.15 2.15 -1.69 1.67 -0.22 2.61 -0.7 3.02
--0.67 2.61 -0.33 2.19 0.18 2.65 -1.15 3.02 -0.31 2.21 0.17 2.67 -0.26 3.06 0.59 2.25
--0.83 2.21 -2.16 2.09 -0.83 2.21 -1.73 2.17 -0.83 3.08 -1.73 2.61 -1.28 2.63 -1.32 2.21
--1.86 1.7 -1.3 3.08 -0.37 2.67 0.07 2.28 0.54 2.71 0.07 2.71 1.5 2.78 0.59 2.74
-0.97 2.76 1.05 3.21 1.04 3.25 1.91 2.32 2.43 1.49 1.47 2.37 0.95 2.34 0.57 3.21
--0.48 3.17 -1.41 1.8 -1.39 2.19 -0.91 2.71 -0.96 1.32 2.43 2.89 -0.96 2.71 -1.43 2.25
--0.46 2.73 -1.43 2.71 -1.43 1.76 -0.52 2.3 -0.93 1.34 0 2.32 -1.45 2.21 -1.95 2.24
--1.46 2.28 -1.91 1.73 -1.91 1.76 -1.98 1.8 -2.88 1.72 -1.91 2.71 -1.93 2.25 -0.99 2.76
--1.46 2.73 2.82 1.96 0.43 2.82 -0.05 2.8 1.39 2.41 -1.91 0.8 1.39 2.43 0.93 2.39
-0.39 3.28 0.89 3.3 -2 2.28 -1.45 2.3 -2.34 0.34 -0.59 2.78 -0.8 -0.02 0 -4.23
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--2.69 3.02 -0.78 2.43 -0.39 2.43 -0.33 2.86 -1.71 2.45 -2.21 2.54 -2.23 1.61 -1.26 2.47
--1.66 2.47 p
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-0.78 2.78 1.84 1.26 1.54 2.26 1.69 3.67 1.52 2.19 1.95 2.21 2.39 2.2 1.61 3.17
-1.11 2.3 1.11 2.75 1.39 1.3 2.67 1.17 1.43 1.76 1.13 2.75 1.86 2.23 3.78 0.16
-3.45 1.15 1.84 2.26 3.04 1.19 2.21 2.17 1.84 2.26 1.5 3.21 -1.07 1.99 0.37 4.67
-1.71 1.3 1.39 2.3 0.16 1.85 2.14 1.73 1.74 2.28 2.47 1.26 2.8 0.82 2.9 1.71
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-2.3 1.85 2.28 1.43 3.45 0.48 3.06 0.55 2.26 0.95 2.28 0.05 1.87 0.54 2.69 0.09
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-2.18 1 1.95 1.9 2.3 2 2.58 1.06 3.13 0.26 0.15 -2.02 2.17 -0.46 0.22 2.04
-1.93 -1.04 2.52 1.09 3.25 1.37 0.95 2.23 0.7 3.21 -0.15 3.02 -0.11 3.02 0.22 3.11
-0.06 3.56 0.65 2.73 -1.28 2.71 -1.26 3.73 0.11 2.06 -1.34 1.63 0.71 2.3 -0.83 1.28
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--1.98 -1.24 -2.69 -0.14 -1.3 1.67 2.07 1 0.78 1.22 3.67 1.97 2.21 1.56 0 6.56
--2.3 0.43 -1.17 -2.32 -1.52 -2.41 -1.75 -0.45 -1.52 -1.41 -2.43 0.39 -1.65 1.58 -3.64 0.61
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--1.11 1.23 -1.22 3.17 0.31 1.52 -3.39 -1.17 -0.15 3.36 1.21 2.2 2.46 0.52 2.41 0.52
-2.78 0.61 p
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--2.58 1.5 0.69 2.02 1.97 1.3 -3.36 -0.08 -2.28 2.06 -2.04 2.54 -1.46 1.67 -1.91 2.12
--2.08 1.11 -0.56 2.78 -0.29 3.27 -0.15 2.39 -2.36 1.07 -2.46 1.52 -2.69 1.04 -2.89 2
--3.54 1.89 -2.48 0.15 -1.26 1.24 -2.62 1.11 -0.31 1.82 -1.25 1.26 -0.76 2.25 -2.95 1.52
--0.07 -1.87 -1.2 -1.08 -1.23 1.28 -0.61 1.85 0.43 1.43 -2.09 0.24 -1.8 -1.58 -1.63 -0.17
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-0.72 -2.29 1.25 -1.28 2.32 -1.15 2.67 -1.11 3.52 0.43 -0.74 -1.96 2.28 -0.7 2.75 -1.06
-2.37 -1.11 2.39 -1.11 2.58 -1.97 -0.37 -2 -1.52 0.3 -0.74 1.78 -2.21 0.17 -1.93 0.72
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--1.45 -0.17 -0.22 1.41 0.35 2.36 0.87 1.52 -0.74 2.3 -0.57 0.84 0 -6.59 -1.15 -2.52
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--1.82 2.19 1.71 1.59 2.21 0.22 2 -0.79 2.58 0.29 3.27 0.8 2.82 1.28 0 6.59
--0.91 1.37 -0.62 1.81 -3.06 0.61 -1.43 2.15 -1.5 0.34 -2 1.2 -2.09 1.65 -2.79 -0.28
--2.34 1.17 -2.09 2.17 -2.41 2.08 -2.11 -0.18 -0.56 1.84 -2.37 2.11 -1.3 2.24 -0.69 2.76
--2.14 0.21 0 -5.96 0.28 -2.78 0.54 -1.81 -0.54 -1.95 -0.02 -0.13 0 -3.1 2.04 -2.21
-0.59 -2.26 0.24 -2.34 -0.11 -2.37 -0.55 -2.34 -1.84 -0.13 -1.3 -1.97 -2.02 1.78 0.16 2.8
--0.24 2.8 -1.28 2.21 -0.17 1.89 1.13 -0.43 1.39 0.58 1.98 2 0 3.1 -0.39 -2.69
--2.36 2.19 -0.54 1.8 0.15 2.37 2.02 1.08 0.88 1.91 0 5.96 -0.31 0.04 -1.45 0.82
--2.11 0.3 -1.64 -1 -0.87 -1.95 -2.32 -1.02 -2.36 -1.52 -1.57 -1.98 -2.45 -0.57 -2.54 1.28
--2.82 0.34 -2.47 0.85 -1.72 -1.43 -2.39 -1.46 0.44 -2.75 0.5 -3.21 -0.73 -0.5 0 -10.66
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--2.49 -0.91 -2.15 -0.98 -2.16 -3.23 -2.18 -2.8 -1.48 -2.35 0.35 -2.34 2.23 -1.84 -2.6 -1.84
--1.55 -1.89 -0.74 -2.3 -2.25 0.02 -2.32 -2.78 -1.61 -2.32 -2.64 0.04 -2.65 0.07 -2.71 0.06
--2.67 -0.37 -2.32 -0.87 -2.43 -2.28 -2.24 1.06 -1.34 2.86 -0.7 1.43 -2.19 1.52 -1.91 0.08
--1.93 -0.84 -2.21 0.63 -2.73 -0.32 0.97 2.3 0.24 2.8 0.61 2.78 -1.82 0.11 -0.95 1.91
-0.61 2.78 p
-1.65 1.8 0.67 3.2 0.96 2.75 0.61 2.3 -0.48 2.84 -0.17 1.84 0.57 2.32 -1.46 3.32
-1.2 1.32 2.52 0.29 1.58 2.23 3 -1.56 2.8 -0.15 3.16 0.28 3.11 -0.57 2.71 -1.04
-3.56 0.82 3.47 -0.52 2.41 -0.54 2.13 0.46 1.07 1.39 0.75 3.19 0.37 2.32 0.39 3.21
-0.37 3.19 -0.98 2.34 -1.98 1.39 -0.97 1.39 0.37 1.39 -1.59 1.82 -0.65 0.95 -2.61 0.5
--2.22 1.43 -1.95 0.06 -1.58 1 -0.16 2.75 2.26 0.38 1.97 0.86 2.58 0.37 1.22 -1.84
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-0.63 2.32 1.55 0.87 1.89 0.5 1.56 0.89 0.26 2.32 0.58 1.8 2.13 0.96 2.43 1.43
-2.08 0.98 1.43 1.84 1.11 1.84 0.79 1.87 0.48 2.25 1.13 0.55 0.2 -2.72 1.57 -0.87
-1.41 1.43 -0.11 1.37 -1.52 0.35 -0.18 2.28 1.98 1.04 3.21 0.18 1.02 1.41 2.35 0.16
-1.84 -0.78 0.07 1.8 1.28 1.46 -1.28 1.26 1.02 1.02 -1.35 1.7 -0.32 2.69 -1.84 1.22
--0.57 2.23 -0.3 2.7 0.35 1.8 1.19 1.46 2.35 0.67 1.06 1.87 2.06 0.63 0.28 -1.78
--0.48 -2.32 0.26 -1.76 1.89 0.18 0.29 -1.76 -1.34 -0.74 0 -2.6 1.73 -0.98 0.09 -1.74
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-0.19 -1.37 3.35 -1.06 -0.33 -1.82 1.99 0.2 1.5 1.52 1.3 1 2.2 0.74 1.15 1.5
-1.5 -1.69 -1.28 -1.02 2.15 -0.7 1.8 -0.22 2.58 1.71 2.73 0.81 1.84 2.08 2.56 1.32
-2.64 0.88 1.82 -2.5 1.96 0.33 1.41 1.19 0.2 2.39 2.08 1.78 0.29 2.86 -1.07 2.59
--0.93 3.08 0.5 1.93 0.21 2.84 2.13 0.93 1.98 -1 1.63 -1.57 1.93 -0.02 1.09 1.65
--1.91 5.21 -1.89 0.04 -1.52 2.02 -0.78 2.19 1.45 1.74 2.23 0.98 2.47 1.04 2.95 -0.17
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--0.09 0.11 0 -0.7 2.71 -0.11 -1.12 -1.34 -1.15 -1.37 -1.43 1 1 1.82 0 0.7
--0.48 0.67 0.15 1.15 0 5.54 -1.74 0.17 -1.88 1 -2.56 0.87 -0.59 1.72 0.07 2.78
--1.41 1.63 0 -21.66 -0.96 -1.43 0.61 -2.22 -1.28 -1.32 -1.11 2.13 0.65 1.65 2.09 1.19
-0 21.66 -0.63 0.74 -1.11 2.54 0.2 2.78 1.41 2.62 1.15 3.04 1.26 2.56 0.41 2.89
-1.24 1.25 -1.08 2.5 -2.7 1.17 -1.43 -0.78 -1.57 -0.37 -1.95 0 -0.37 -1.88 -1.08 -1.18
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--0.33 1.76 -1.47 2.13 0.48 1.87 -1.24 1.08 0 -3.41 0.91 -2.08 -1.15 -1.39 1.02 -0.93
--1.84 -1 p
--0.66 0.04 0 -1.26 1.76 -0.32 -0.7 -0.93 -1.61 -0.68 -1.35 1.24 1.89 0.7 0 1.26
--1.34 0.13 -1 2.63 2.04 1.3 2.02 1.3 0 3.41 -1.09 0.93 -1.52 2.56 -1.59 2.97
--1.5 2.56 -1.3 3 -1.73 1.2 -0.74 -1.85 -1.52 -0.15 -2 -2.41 -1.32 -1.89 -2.46 -1.52
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-2.71 0.63 1.13 1.82 0.82 2.3 1.74 -1.17 1.21 2.32 1.17 2.3 1.15 3.23 1.8 1.95
-0.48 2.71 0.56 2.3 0.33 2.21 0.67 2.32 1.43 2.41 0.21 2.21 1.93 2.96 -2.52 -0.81
--2.13 -0.74 -2.04 -2.06 1.19 2.37 2.76 1.3 -1.63 1.09 1.65 1.56 1.35 1.95 0.2 -2.62
-1.06 1.49 0.7 -1.62 1.46 2 -1.37 0.19 -0.54 1.71 2.02 1.2 0.89 2.84 2.54 0.5
-2.36 1.43 0.79 2.43 1.41 1.7 2.34 -0.79 0.34 1.89 1.2 1.26 1.24 -2.91 1.09 2.17
-1.52 -1.91 0.26 3.32 2.91 -0.02 2.71 -0.55 2.58 -0.58 -1.26 -2.34 -2.64 -0.33 3.32 -0.87
-2.65 0.39 1.11 1.37 2.41 -0.13 1 -1.56 3 0.59 3.05 0.21 3.06 -0.26 3.06 -0.78
-3.04 -0.7 2.8 -0.3 2.95 -0.7 2.17 -1.65 1.78 -2.3 -0.2 -2.17 -1.37 -2.15 -2.15 -1.5
--2.87 -0.13 -2.38 -0.48 -2.24 -0.33 -2.9 0.42 -2.97 -0.13 -2.96 0.95 2.7 -1.99 2.54 -0.57
-3.43 -1.24 1.52 -2.4 1.24 -2.04 1.48 -2.43 0.3 -0.02 2.95 -0.28 1.43 -0.43 2.13 -0.65
-2.91 1.15 -1.61 2.41 -1.72 -0.7 -2.97 1.3 -0.14 2.02 2.13 0.3 2.87 -0.34 2.37 0
-2.86 0.71 -2.8 1.87 -2.5 1.52 0.63 2.34 1.19 2.11 0.14 2.23 2.34 0.57 2.08 0
--0.09 2.1 -1.93 2.26 -1.93 0.11 -1.26 2.61 -2.23 2.61 -3.3 1.02 2.93 0.41 2.08 1.13
-2.05 -0.54 2.45 -1.43 -1.82 -1.52 0.56 -2.48 2.34 0.22 2.3 -1.02 1.87 1.06 0.52 2
--2.43 2.58 0.93 1.67 0.8 2.24 0.3 1.97 1.02 1.89 0.33 2.06 0.3 2.06 2.43 -1.97
-2.84 -0.39 -1.02 1.74 1.15 1.47 2.02 0.98 -0.29 2.39 0.43 1.75 2.91 -2.25 1.52 0.59
--1.71 1.32 0.52 1.13 -0.48 1.67 -2.47 0.54 -2.19 0.89 -2.61 -0.24 -2.06 0.28 -1 1.83
-3.56 -0.33 3.73 0.65 2 1.26 3.17 0.11 1.65 1 2.47 0.32 0.52 0.2 1.69 0.65
-2.61 -0.24 2.37 0.29 -2.23 2.4 -2.26 -0.17 -3.36 1.04 -1.98 -0.63 -1.82 1.13 -1.9 1.96
--2.85 0.76 -2.19 1.61 -0.63 2.6 -1.93 1.96 -2.75 1.78 -1.93 1.98 -1.93 1.91 -0.15 1.73
-2.36 -0.37 1.24 -1.13 2.69 1.07 2.04 -1 2.12 -1.71 2 -2 3.23 -0.2 2.97 -1.49
-2.97 -1.54 3.32 -1.93 2.95 -1.59 3.45 0.11 2 -1.91 2.45 -1.37 1.75 -2.39 1.15 -2.12
-0.35 -3.15 3.64 0.2 -0.36 2.3 -0.81 2.67 -1.93 2.15 -1.65 2.63 -3.78 1.33 -2.89 1.66
--0.67 2.11 -1.91 -2.04 -3.73 1.46 -2.84 1.75 -2.04 1.91 -2.95 0.56 -2.52 0.11 -2.54 2.21
--0.32 1.65 -1.65 1.57 -2.17 0.82 -2.17 -0.43 -0.76 0.84 2.73 0.33 3.26 -1.07 2.28 -1.69
-3.06 -1.41 p
-4.34 3.38 -1.91 -0.02 -2.54 -1.21 -2.95 0.47 -0.41 1.52 2.13 0.43 -0.69 1.22 -2.93 -0.87
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--1.98 1.65 -1.96 1.91 -1.39 2.56 -0.97 2.04 -2.17 1.61 0.04 1.7 -1.8 2.73 2.3 -0.63
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-1.63 1.34 2.61 0.59 3.43 0.09 2.88 -1.25 3.64 -1.76 2.89 -1.65 3.5 -1.76 1.65 -1.58
-3.06 -1.02 -0.44 1.48 -1.64 1.73 -1.81 1.82 -1.36 -0.89 -2.04 0.87 0.63 1.33 0.63 1.11
--0.59 1.32 -2.67 -0.32 -0.98 -1.65 -1.41 0.58 -0.17 1.58 2.56 -0.52 3.38 1.25 -1.89 1.48
--1.28 1.37 0.13 1.82 -1.11 1.84 2.82 0.07 -0.17 2.13 -1.35 2.73 -1.82 1.65 -1.58 -1
--2.34 -0.15 -1.8 2.28 -0.7 2.91 -0.86 2.3 1.47 2.32 3.41 0.37 3.49 -0.37 2.17 1.63
-1.21 1.87 -0.28 1.54 -3.04 0.49 -2.84 -0.34 -2.91 -0.3 1.08 1.93 -0.41 1.52 -2.3 0.26
--1.78 0.89 -0.39 1.39 -3.55 2.17 -2.28 2.09 -1.33 -1.56 -1.17 -1.15 -2 -0.14 -2.32 1.59
--0.87 -1.37 -2.34 1.93 0 -46.89 1.56 -1.76 0.43 -2.08 1.98 -1.71 -0.79 0.17 0 -31.41
-2.82 -1.63 0.37 -2.21 0.13 -2.41 -0.45 -2.06 0.54 -2.56 0.41 -2.52 1.37 -2.3 0.98 -2.56
-1.25 -2.3 1.24 -2.34 1.09 -2.34 1.36 -2.17 2.37 -2 2.78 -1.67 2.82 -1.02 3.43 0.2
--0.17 -1.5 -2.61 -1.37 -2.87 -0.93 -1.34 0.15 0 -10.07 3.3 -0.22 0.91 -1.73 -1.34 -2.02
--2.56 1.88 -0.3 2.09 0 10.07 -1.65 0.19 -3.54 0.5 -2.3 2.02 0.28 2.02 -1.93 1.11
--1.43 2.64 0.11 1.98 -2.21 0.8 -0.8 2.56 -1.97 2.91 -1.67 1.2 0.5 2.43 -0.65 1.48
--0.79 2.11 -0.08 2.78 1.66 1.75 0.61 2.32 -1.29 1.73 -0.26 2.3 1.89 0.71 0 31.41
--2.11 0.48 -3.55 0.84 -3 0.7 -1.37 0.93 1.37 1.39 2.06 1 3.41 0.04 0 46.89
--0.13 0.13 -2.04 1.65 -1.82 1.5 0 -3.17 2.75 -2.14 0.33 -1.65 -2.32 -0.41 -0.84 0.34
-0 -0.78 1.41 -0.46 -1.46 -0.99 -1.21 0.8 1.26 0.66 0 0.78 -1.55 0.63 0.05 2.34
-1.58 0.89 0 3.17 -0.24 0.2 -1.73 2.25 -3.15 1.61 -1.88 1.72 1.75 1.67 -0.35 1.39
--1.88 0.85 -0.8 1.56 1.32 1.07 -2.71 0.72 -0.18 0.06 0 -21.09 2.93 -0.3 0.39 -1.21
-3 -0.91 2.57 -0.79 1.22 -1.32 -1.43 -2.09 -3.04 -1 0 -38.78 3 -0.67 2.84 0.17
-0.74 -1.41 -1.04 -1.34 -1.02 -1.74 -2.87 -0.43 -1.21 -1.54 -2.84 -0.17 -2.84 1.49 -2.88 0.67
--2.32 1.91 1.67 0.52 1.65 0.7 1.76 -0.46 2.23 0.32 1 1.3 2.14 0.67 0 38.78
--0.91 -0.32 -3.19 0.7 -0.5 2.82 -3.4 -0.32 -0.09 1.97 -1.04 0.61 -0.72 1.28 1.15 0.74
-3.06 0.15 0 21.09 -2.24 0.87 -3.75 0.68 -2.91 1.34 0 -17.77 2.08 -0.95 1.82 -2.59
--1.02 -2.13 p
--0.57 1.13 -2.62 1.74 -2.2 1.78 2.5 1.02 0 17.77 -0.24 0.11 -2.84 1.28 -0.91 1.11
-0 -96.24 2.82 -0.74 0.28 -1.34 -1.32 -0.68 2.61 -1.28 0.3 -0.96 -1.84 -1.12 0.69 -1.89
--1.19 -1.06 -0.89 1.87 1.39 1.09 -1.76 1.34 0.7 2.02 -1.17 1.02 -0.61 1.74 0 96.24
--0.33 0.39 0.46 1.72 2.52 1.08 -2.23 1.76 -4.11 1.13 -1.3 0.22 0 -105.02 2.52 -1.09
-1.15 -1.7 1.61 -0.15 -0.43 -1.8 -0.87 -0.24 0 -1.54 1.84 -0.16 -1.15 -1.17 -0.7 1.33
-0 1.54 -1.39 -0.39 -0.85 1.08 1.06 0.93 -1.67 1 0 -5.12 0.46 -1.61 1.37 -1.02
--0.89 -1.11 -1.71 -0.33 -1.15 0.95 -1.07 -0.67 -1.52 -0.09 0.34 2.54 1.46 -0.04 0.93 -0.74
-0.63 2.04 1.15 0.07 0 5.12 -0.43 0.25 -0.7 2.09 0 105.02 -3.49 0.58 -4.21 1.33
--3.26 1.3 -2.3 -0.61 -2.16 -0.98 -2.61 1.06 0 -127.66 0.84 -1.37 -0.2 -2.48 -1.41 -1.73
--3.69 -0.09 -3.21 1.21 1.32 -2.45 3.67 -0.95 1.71 -1.74 2.04 -1.28 2.89 -0.98 -1.61 -3.08
--2.82 0.21 0 2.63 -1.82 0.93 -1.46 2.02 -1.13 -1.32 0.67 -1.89 -0.11 -2.75 -0.11 -2.63
-0.39 -2.5 -3.45 2.08 -2.34 2.09 -1.08 2.13 1.43 1.58 -2.46 -0.37 -2.54 2.08 -1.56 2.95
--0.48 2.04 3.11 0.83 2.13 -0.46 0.32 1.87 2.02 -0.17 -0.63 1.56 1.58 1.63 1.76 -1.3
-1.5 1.67 2.28 -0.29 2.43 0.31 0 127.66 -0.22 0.09 1.09 0.84 2.49 -0.41 0.39 1.3
--2.49 1.11 -0.18 1.37 -2.52 0.04 -2.02 -0.73 0.58 -1.78 -0.84 -2.26 -3.71 0.79 -3.52 0.7
--3.57 0.67 -4.12 0.26 -3.34 1.15 -3.45 0.74 -0.72 0.23 0 -5.88 0.37 -1.17 -3.41 -1.63
--4.38 -0.07 -2.21 1.41 4.42 1.2 2.17 -0.39 3.04 0.65 0 5.88 -2.34 0.8 -0.7 0.35
--2.71 1.3 -2.75 1.24 -3.84 0.86 -0.61 0.2 0 -251.65 0.48 -1.34 -2.71 -1.7 -1.21 -2.21
-2.43 0.41 2.15 -0.07 2.65 -0.04 0.24 -1.82 -0.87 -1.75 -1.17 -2.23 -1.43 -1.76 -1.71 -1.3
-2.19 -0.04 2.21 -0.98 1.06 -1.78 0.5 -2.71 1.09 -2.28 2.3 -0.89 0.87 -2.28 0.58 -1.78
-0.87 -1.37 0.56 -1.84 -1.15 -1.34 0.89 -0.87 1.17 1.36 1.48 0 2.09 -0.91 0.93 -1.78
--0.85 -2.3 -2.08 -1.37 -1.5 -2.3 3.08 -0.41 -1.8 -2.32 -3.12 -0.89 -2.78 0.02 -2.78 0.45
--2.5 -1.32 -2.75 0.98 -2.52 -0.41 -0.73 -2.24 -3.06 0.98 -2.28 -1.71 -1.85 0.52 2.3 1.76
-1.95 1.73 1.7 2.23 2.13 -0.06 1.84 -0.04 1.28 2.19 -2.47 -1.3 -1.75 1.41 -1.8 0.57
--2.45 -0.39 -0.54 1.39 2.24 1.26 1.84 0.87 0.15 2.71 -2.11 0.09 1.32 1.73 -0.52 1.39
-3.21 -0.54 2.06 0.37 0.11 2.28 1.21 2.24 -1.71 0.04 -1.35 1.84 1.24 2.21 -5.21 -1.65
--1.02 1.89 1.61 3.06 -1.24 1.85 -1.84 -2.13 0.13 1.78 -1.95 0.09 2.36 1.67 0.43 2.23
--1.97 -0.8 0.15 1.82 1.58 2.6 -2.15 0.11 -1.23 1.41 1.17 0.8 1.52 -0.93 0.41 1.76
-1.48 1.69 1.21 2.19 2.86 -0.11 2.87 0.33 0 251.65 -2.91 0.96 -2.8 1.11 -1.93 1.5
--4.21 -0.37 -4.95 0.09 -3.28 1.23 -3.91 1.09 2.09 1.3 1.19 1.45 3.69 0.48 -0.65 1.86
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--2.91 1.89 -2.26 2.91 S
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--0.63 1.65 -2.26 0.87 3.77 1.52 3.64 0.75 3.65 1.13 3.02 1.89 2.64 0.63 3.28 0.63
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--2.52 -1.39 -0.5 1.5 -2.88 0.89 -0.76 1.89 4.14 1.52 1.52 2.12 3.91 0 2.13 1.52
--0.24 1.25 1.26 2.28 0.24 2.76 -3.91 0.63 S
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--1.89 -4.41 -1.39 -4.29 S
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-1.65 3.52 1.75 1.89 2.65 4.29 2.63 3.64 2.64 5.04 2.65 4.29 1.75 3.78 2.89 3.41
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--2.75 -1.65 0.13 1.79 -2.14 -0.13 -1.26 1 1.26 2.78 S
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-2.02 1.79 0.37 1.25 -2.63 0.63 -1.39 0.87 -1.89 1.02 S
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--2.75 -1.78 -2.15 -0.13 -2.26 0 S
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--2.76 -0.5 S
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-2.02 1.88 2.78 0.89 0.24 1.64 -1.26 1 S
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--2.91 0.5 -1.89 -1.39 1.39 -1.5 -1.63 -3.04 1 -1.89 2.65 -1.26 1.76 -2.02 -1.39 -1 S
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-2.26 2.91 -1.13 2.38 0.5 3.02 -2.26 -0.37 -2.28 0.89 -2.39 -0.39 -2 0.13 -1.65 1.26
--2.52 0.13 -2.65 0.37 -2.5 0.13 S
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--3.02 -2.65 -3.52 -0.89 -1.75 -1.52 2.52 0.39 1.75 -0.63 -2.14 -3.04 -2 -3.15 S
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--2.75 -0.87 S
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-2.49 0.5 -1.49 1.78 -1.39 1.75 -1.89 -0.25 -0.5 1.64 -1.62 1.13 -2.28 -0.63 -2.63 0.63
--1.15 1.76 -2.13 0 S
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-1.89 1.13 -2.02 0.75 -2 -0.37 -1.12 2.13 -1.39 0.89 -1.89 1.39 -2.02 0.76 -2.78 -1.15 S
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--1.63 2.02 -2.75 1.13 S
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-1.13 -0.99 -1 -1.65 2.89 -2.75 -1.39 0.24 -3.15 2.78 1.13 -3.02 -1.89 0.87 -3.14 0.63 S
-2205.54 2520.77 -2.5 1.26 -4.3 1.52 -3.25 1.13 -3.28 1.13 1.89 -1.39 2.75 -1.13 1.88 -0.24
-0.39 -1.64 2.76 -1.13 1.39 -1.52 1.89 0.39 2.38 -1.89 1.39 0.24 1.39 -1.39 4.14 -1.5
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--3.38 1.63 -2.28 1.78 -1.89 1.89 -3.64 2.12 S
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--1.26 1.89 -2.75 0.76 -1.76 -1.02 -3.04 0.76 -2.52 -0.64 2.52 -1.75 S
-2234.09 2535.89 -0.11 -1.39 -3.04 0.76 S
-2323.54 2527.32 3.65 -1.12 3.27 -1.13 3.28 -2.02 -0.26 1.63 -2.26 1.13 -3.54 1.15 -4.14 0.36 S
-2152.45 2920.49 2.65 -1.13 1.5 1.13 0.75 3.14 -3.14 0.76 0.63 -0.89 -0.63 -2.52 -1.76 -0.5 S
-2124.16 2950.72 0.87 -2.52 -0.11 1.02 -0.75 1.5 S
-2101.89 3010.94 1.13 -1.02 0.24 -3.02 1.26 -1.62 1.78 0.11 1 -1.37 1.13 -1.02 0.39 2.65
--1.15 2.14 -1.5 1.89 -1.65 1.89 -2 0.13 -0.62 -0.76 S
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-2091.82 3053.02 2.02 -2.02 1.75 1.5 1.76 -1.76 1.89 0.5 1.89 0.52 S
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-1.15 -1.76 1.13 -2.39 1.89 -1.02 0.11 -1.39 -1.13 -2.88 0.75 -3.41 2.65 -2.12 -0.39 -2.54
--2 -0.63 -1.65 -0.87 2.39 -1.76 2.15 -0.89 1.75 -1.39 1.52 -1.89 1.89 -1.26 1.63 0.13
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--1.52 1.89 -0.76 3.4 -1 2.26 -0.63 2.65 -0.89 2.91 -1.13 2.39 -1.63 1.52 0 3.02
--0.89 2.15 -0.74 2.25 -1.65 1.52 -1 2.52 -1.52 1.5 -2.26 0.52 -1.75 1 -1.89 1.02
--2.39 0 -1.89 -0.52 S
-2095.09 3054.51 -1.15 -2.02 -2.13 0.52 S
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-2.39 1.76 0.63 1.52 2.41 -0.12 -0.63 -1.52 2.13 -0.75 2.78 -0.37 1.99 -1.12 0.52 -2.91
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-0.5 -3.64 -2.26 -0.39 -1.89 1.25 -1.26 2.15 -1.65 1.76 -1.89 -0.73 S
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--1.13 -3.02 S
-2163.29 2959.16 -0.39 -2.26 1.26 1.26 S
-2164.15 2958.16 1.13 -0.52 -0.24 1.78 -0.89 -1.26 S
-2164.15 2958.16 -0.86 1 S
-2163.39 2949.09 0.89 -2.78 0 1.13 -0.89 1.65 S
-2124.02 3053.52 -0.89 -2.28 -1.63 -0.74 0.26 -3.91 -0.89 -3.67 1.75 1.39 0.26 2.78 1.13 2.02
-0.89 3.64 -0.89 0.76 S
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-2132.21 3061.57 0 -3.64 -2.28 -2.39 1.89 2.78 0.39 3.25 S
-2130.19 3051.13 0.76 -3.8 -1.52 -2.76 S
-2130.95 3043.32 -0.39 -4.04 S
-2128.93 3036.37 -0.76 -6.16 S
-2129.82 3028.69 1 -2.88 -2.39 -1.26 S
-2132.83 3023.03 1.26 -1.63 S
-2133.07 3016.73 2.15 0.5 1.63 -3.02 S
-2110.68 3060.3 2.02 -0.87 S
-2168.18 3103.28 1.89 -0.13 1.76 1.26 S
-2196.86 3126.82 2.14 -1.25 2.02 -1.26 2.88 -0.37 -0.13 1.76 -2.13 0.39 -1.65 0.74 -1.89 1.15
--1.25 -1.15 S
-2261.66 3150.52 0.5 -2.52 -0.37 -1.78 0.76 -1.89 1.37 -1.75 1.52 -1.13 0.63 2.26 -0.63 1.76
--0.76 2.02 -1.39 1.78 -1.63 1.26 S
-2248.57 3134.77 -0.13 -1.89 0.63 -2.52 1.26 -2.91 1.39 1.65 2.39 0.24 -2.39 1.15 -1.62 1.13
--1.02 2.02 1.26 1.89 -1.76 -0.76 S
-2294.75 3240.08 1.25 -1.39 3.39 -0.5 0.37 0.24 -0.5 1.39 -1.76 0.89 S
-2297.5 3240.71 -2.75 -0.63 S
-2299.13 3233.66 -3.52 -1.76 -1.13 -1.78 3.02 0.63 2.52 1.26 -0.89 1.65 S
-2263.78 3211.87 1.26 -1.02 -3.12 -0.13 0.73 -1.26 1.89 0.26 -2.38 -1.65 3.64 1.65 1.02 1.52
--3.04 0.63 S
-2242.77 3203.8 -0.11 -2.02 0.11 -2.25 1.89 2.25 -0.11 1.39 -1.78 0.63 S
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--2.39 -0.39 1.39 -1.52 3.38 1.64 1.52 -0.25 1.25 -1.39 -2.64 -2 2.52 0.37 -1.5 -2.15
-1.86 -1 2.15 2.25 2.25 2.29 -1.75 0.5 2.52 2.02 -1.25 0.26 -2.52 -1.65 -0.24 1.39
-1.76 1.39 4.02 1.25 -2.52 0.76 S
-2285.54 3124.07 0.39 2.13 3.02 1.25 -0.76 1.79 -2.02 1.13 -2.26 0.63 -0.37 2.78 2.13 0.5
--1 1.76 -3.41 -0.24 2.91 1.89 2.13 1 3.15 1.75 2.64 2.02 -1.39 0.89 -2.75 -0.13
--2.28 -1 -2.26 -1.65 -3.15 -1.63 -2.88 -2.41 -3.41 -1.63 -2.52 -1.52 0.5 -1 -2.63 -0.63
--2.14 -0.5 S
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--1.26 -2.52 3.39 -0.37 0.63 2.52 2.15 2.26 1.39 2.4 1.26 3.02 1.76 3.02 3.02 1.89
--3.28 0.76 -2.76 -0.63 -3.78 -1.25 -3.64 -2.13 -3.28 0.74 S
-2333.86 3245.5 -2.63 -2.14 1.63 -1.65 2.15 -0.24 S
-2335 3241.47 2.63 1.13 1.52 1.75 -1.12 1.79 -4.17 -0.64 S
-2353 3274.71 -2.52 -2.12 -3.14 -2.14 -2.28 -2.28 -1.63 -3.02 0.63 -2.15 0.13 -3.39 1.13 -1.39
--1.63 -3.27 1.63 -0.76 3.78 0 -2.26 -2.02 -1.65 -3.78 -4.28 -1.52 3.02 -0.74 -2.25 -2.65
--0.76 -2.91 -2.64 -2.15 -2 -1.89 -2.64 0 -3.28 -0.24 -2.76 0.24 -1.89 -3.14 -3.14 0.5
--1.39 2.28 -0.5 3.02 -2.15 -0.76 -1.13 0.76 -2.78 -0.76 -1.87 -2.39 1.5 -2.64 2.26 -0.5
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--0.76 -1.5 0 -2.54 0.63 -2.26 1.13 -2.02 2.15 1.65 S
-2317.64 3208.72 0.5 2.63 0.87 2.9 0.76 2.52 1.64 2.28 0.37 -2.78 -0.37 -2.78 -0.13 -3.02
-2 -2.02 3.78 2.26 1.02 2.78 2.52 2.14 0.76 2.26 0.61 3.14 1.89 2.78 3.91 2.15
--0.37 -4.3 -2.39 -3.02 0 -3.02 3.14 1.5 2.63 -1 2.39 1.26 4.03 1.39 0.63 2.26
-0.26 2.65 0.37 2.78 0.87 2.78 -1.87 2.13 0.63 3.28 2.89 1.78 2.38 -1.26 1 3.02
-2.78 0.87 2.02 2.78 0.5 2.78 2.02 3.78 0.49 2.28 -0.89 2.25 3.02 1.39 1.76 1.39
--1.37 1.5 0.49 1.89 0 1.52 -2.88 0.63 -0.62 1.65 -2.52 0.5 3.39 0.76 2.64 1.89
-3.02 0.63 1.39 1.26 S
-2369.59 3267.93 -1.02 1.26 -2.76 1.13 -3.15 0.63 -3.41 -0.89 -2.75 -0.73 -2.52 -1.39 S
-2354 3267.93 1.75 2.13 2.78 1.02 2.63 0.89 2.91 0.24 2.13 -0.12 2.28 -1.37 -0.26 1.75
--0.5 2.02 -2.02 0.87 -3.02 0.63 -2.88 0 -2.91 -0.11 -3.88 -1.15 S
-2369.73 3266.28 -2.28 -0.37 -2.75 -1.39 -0.13 -2.14 1.5 -0.87 0.26 -2.28 2.02 0.63 2.38 1.52
-0.63 1.76 -0.5 1.76 -1.13 1.39 S
-2374.37 3288.08 -1.26 -1.78 -0.86 -2.13 3.52 0.64 2.38 1.25 0 1.39 -3.77 0.63 S
-2388.34 3289.34 -2.41 -0.26 -3.02 -1.62 0.63 -1.91 -1.63 -1.49 -2.78 -0.89 -2.88 -0.13 -3.39 -0.87
--1.15 -2.78 -0.11 -2.39 0.11 -2.02 S
-2371.72 3274.98 0.52 -2.15 2.63 -0.63 -1.13 -2.25 1.89 -1.78 2.89 0.25 2.52 0.89 1.02 2.38
--0.63 1.63 0.13 2.15 -2.15 1.76 0.37 2.41 1.65 2.02 1.39 -0.26 1.24 1.39 1.78 1
--0.13 1.75 1.89 1.79 0.75 2.02 S
-2408.72 3290.34 -1.89 -1.13 -2.78 -0.89 -2.38 0.13 -3.02 -0.63 -2.39 -1.63 0.13 -2.65 2.63 -0.63
-3.28 -0.13 2.02 -0.75 2.52 0.49 0.5 1.52 3.02 0.13 1.52 1 0.37 1.76 2.02 1.02
-3.15 0.86 -0.13 1.15 -3.02 -0.13 -2.38 0.76 -3.15 -0.26 S
-2419.16 3287.96 -3.52 -0.76 -2.02 -1.65 0.24 -1.99 1.26 -1.26 0.63 -2.02 1.52 -1.89 -2.38 0.74
--1.76 1.91 -1.78 0.63 S
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--1.26 -2.29 -1.13 2.15 -2.78 -0.5 -0.87 -1.25 -1 1 -2.28 1.02 -2.76 -0.62 -0.39 -2.02
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-2.78 -0.76 2.02 1 1.5 -1.75 3.51 0.39 3.15 1.13 3.64 0.24 2.41 -1.37 3.64 0.11
-2.88 0.13 3.28 -0.37 3.89 -0.25 1.52 0.63 2.52 -0.24 2.02 0 1.26 0.63 0 1.26
-0.87 1.37 -0.37 1.65 0.26 1.76 -0.89 1.39 -1.13 0.89 -0.13 1.39 -1.63 1.89 -2.65 0.5
--2.02 1.13 -1.5 0.89 S
-2423.7 3286.07 -1.39 -0.26 -0.26 1.52 -2.89 0.63 S
-2408.46 3293.88 -1.25 -1.52 3.02 1.13 -1.76 0.39 S
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-0.5 1 2.39 0.5 2.75 0.13 2.52 1.26 0.26 1.39 1.52 1.13 0.37 1.26 -1 0.52 S
-2392.86 3290.61 -1.5 -1.89 -0.89 -2.15 1.63 -0.63 1.52 0.37 0.26 2.52 -1.02 1.79 S
-2394.38 3299.28 -3.41 -0.24 -1.13 -1.39 2.64 0.63 2.13 0.13 -0.24 0.86 S
-2386.7 3298.66 -3.02 -1 -2.39 -0.39 -3.02 -1.26 1.13 -1.62 S
-2379.41 3294.38 -4.04 -1.39 -0.37 -2.78 3.52 -0.24 2.91 0.63 2.63 0.24 2.15 1.78 0.5 1.89
--1.88 0.63 -2.76 0 2.76 1.26 2.02 1.13 -0.13 1.13 S
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--2.25 0 -3.41 -1.63 0.63 2 -0.87 1.26 S
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--1.26 1.39 -0.23 1.76 -0.89 1.52 -1.88 0.13 -1 1.39 -2.65 0.5 S
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--4.27 -0.13 -3.02 0.89 -2.25 1.39 -2.02 1.26 S
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--0.24 -1.89 -1.89 0 -0.75 -1.64 0.13 -2.39 2.26 -0.63 1.76 -1.52 1.39 -1.63 -0.37 -2.64
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-1.89 2.26 2.39 2.15 2.89 1.89 1.25 3.64 3.28 0.63 3.52 1.65 2.28 2.02 1.75 2.38
-1.13 3.65 S
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-2.25 1.63 2.15 1.63 3.02 1.39 2.39 0.63 2.76 -0.87 3.28 0.5 3.01 0 3.28 0.5
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-1.76 -1.52 2.02 -1.63 1.13 1.5 0.63 2.52 -1.52 1.02 1.89 0.63 1.39 0.64 2.28 -0.26
-0.63 1.78 -1.65 1.26 4.28 0.5 1.52 1.88 -2.02 0.37 S
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-1 1.5 0 2.52 -0.37 1.89 1.62 2.28 0.38 2.02 1.78 1.13 1.26 1.89 1.89 1.89
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--2.25 -0.63 -2.64 -0.13 2.25 1.78 2.15 0.74 0.99 0.63 0.39 1.39 -1.89 0.13 -0.64 -1.26
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--1.39 1 0 1.39 -0.89 1.89 -2.62 1.13 -2.52 1.52 -3.02 0 -3.67 0.76 -3.25 -0.5
--2.39 -1.13 -1.65 1.5 S
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--2.12 0 -3.15 0.11 -3.28 -0.63 1.39 -1.75 -1.63 -1.26 -3.91 -0.76 -2.78 1.79 -2.52 0.63
--2 1.26 -2.91 -0.52 S
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--2.78 -1.75 4.54 -1 2.14 -1.78 3.02 -1.37 3.28 1.13 2.52 0 2.89 1.39 3.78 0.87
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--1.37 1.13 -2.52 0 -1.52 -1.13 -0.87 1.52 -1.15 -2.41 -2.89 -0.37 0.89 3.02 -1.13 2.02 S
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-1.88 -1.89 2.02 -1.62 1.88 -1.76 1.39 -2.28 2.02 -2.25 1.37 -2.29 0.13 -2.25 0.89 -1.39
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--1.89 -2.41 -1.13 -3.28 -0.99 -3.14 -1.02 -2.78 -0.5 -2.75 -1.52 -2.78 S
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--0.26 -2.28 1.76 1.02 2.02 -1.75 1.75 -1.52 3.15 0 1.89 1.39 3.02 0.5 3.41 0.13
-2 1.39 3.02 0.63 S
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-3.02 0.13 2.64 0.64 2.39 1.88 3.41 1.89 2.39 1.39 2.02 1.89 S
-2629.38 2636.54 2.63 2.26 2.02 1.89 2.52 2.02 2.65 2.28 1.75 2.38 1.76 2.78 2.14 2.39
-1.76 2.28 2.88 2 2.39 1.52 1.39 2.78 1.39 3.28 1.39 2.88 0.37 2.28 0.37 1.76
--1.76 0.89 2.39 3.28 2.78 1.13 1.89 1.13 3.77 1.63 2.76 1.29 2.02 1.5 1.75 2.91
--0.11 2.75 0.87 2.41 0.37 3.28 -0.61 2.26 -0.39 3.65 -0.5 3.17 -1.52 1.75 0.76 2.78
-2.39 2.13 2.02 1.65 2.02 2.52 2.39 1.26 S
-2680.08 2714.65 2.52 3.14 2.02 2.52 2 2.65 2.78 1.25 2.39 1.26 3.64 1 1.89 2.14
-2.88 2.78 1.89 2.15 2.02 2.63 1.65 2.64 0.63 3.04 -0.76 3.28 0.24 2.89 -0.74 3.27
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-1.26 2.65 1.76 3.78 1.63 3.77 -0.11 3.41 2.25 0 2.02 2.9 2.13 2.39 1.26 3.14
-1.64 2.39 1.63 3.28 2.39 3.14 1.26 2.78 2.02 2.39 2.02 2.02 2 3.04 2.02 2.52
-2.52 1.63 S
-2729.64 2844.9 2.02 2.39 1.89 2.52 1.5 3.04 1.88 3.02 1.52 2.39 1.75 3.17 1 2.75
-0.89 3.41 1.39 2.52 1.89 2.65 0.24 3.64 0.5 2.78 0.76 3.4 0.89 2.89 0.37 3.28 S
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--3.02 0.11 -1.52 -3.14 -2.63 -2.02 -2.65 -1.76 -2.64 -0.37 -2.26 -1.76 -2.88 -0.75 -2.52 -2.91
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--2.02 1.13 2.25 2.14 -1.37 2.65 -2.52 1.89 -2.65 1.89 -2.15 2.02 -3.02 1.75 -2.62 2.39
--2.65 0.39 -3.28 0.74 S
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--3.02 1.75 -2.78 0.89 -2 3.02 -0.89 2.41 -1.26 3.28 -0.26 2.88 -0.37 2.02 -2.15 2.02
--0.86 3.28 -1.89 0.63 -2.25 0.86 -2.02 1.02 -1.88 2.64 -0.89 1.76 -0.13 2.52 -2.13 1.52
--1.89 2.65 -1.76 2.02 -1.89 2.65 -1.39 2.13 -2.25 2.52 -1.02 2.28 -1.63 1.63 -0.99 2.28
--2.15 1.49 -2.12 2.02 -1.78 2.02 -1 2.39 -1.76 2.02 0.87 1.26 1.39 -2.26 1.89 -2.52
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-0.89 -2.91 0 -3.02 S
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-2.26 -2.52 1.64 -2.65 1.87 -2.52 2.78 -0.89 2.52 -1.39 2.26 -2.39 2.02 -2.52 1 -2.91
-0.13 -2.02 1.02 -2.26 S
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-1.89 -2.52 1.89 -2.15 1.89 -1 2.39 -2.52 1.88 -2.54 0.89 -2.38 0.13 -2.52 1 -2.78
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-2.26 1.65 0.89 2.39 2.02 0.5 2.5 0.26 2.41 1.25 1.37 2.02 1.52 2.64 2.52 0.74 S
-2733.42 2920.86 2.12 1.78 1.15 3.02 2 2.26 2.52 1.91 2.15 1.76 2.13 1.88 2.14 1.89
-2.13 1.76 -0.5 2.02 0.26 2.28 1.89 2.39 2.02 1.89 1.89 2.25 2.13 1.39 2.02 0.26
-1.5 2.25 -0.11 3.41 1.99 1.89 1.65 1.26 0.87 1.39 -0.24 3.41 0.99 2.02 1.63 1.39
-1.52 1.76 -1.52 2.14 -0.74 3.15 0.24 3.02 1.76 0.89 0.26 2.88 0.37 2.52 0.76 2.14
-0 3.52 -0.13 3.41 -2.25 0.76 -2.39 1.63 -2.02 2.02 -2.88 -0.11 -2.28 -0.65 -2.63 0.52
--2.65 1.13 -2.64 1.63 -1.37 3.41 -1.15 2.91 -0.37 1.63 -1.25 0 0.13 -2.25 -1.12 -2.28
--0.63 -2.52 -0.63 -2.65 S
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--1.26 1.15 -1.78 -0.63 0.39 3.38 -0.76 3.04 -1.39 2.76 -1.89 1.52 -0.87 -0.89 0.63 -2.64
--0.63 -2.89 -1.26 1.13 -2.28 1.89 -0.62 2.52 S
-2720.71 2996.44 -1.63 2.15 -2.39 1.13 -2.78 1.79 -2.75 1.62 -1.89 2.02 -2.25 2.38 -1.79 2.65
--2.12 0.26 2.12 1.89 -1.99 2.02 2.13 0.74 0.26 3.41 1.89 -0.87 1.99 -0.89 1.39 1.75
-2.15 -1.39 2.76 -2.76 2.91 -2.15 1.89 -2.52 2 -2.02 3.28 0.26 2.25 -0.63 2.78 -1.64
-2.26 0.37 2.14 -1.26 1.89 1.39 2.39 -0.63 1.76 2.52 1.39 1.79 S
-2742.73 3009.81 1.63 1.88 2.15 1 2.13 -1.26 1.39 -2.26 1.89 -2.52 3.02 0.74 2.52 0.76
-2.88 0.26 2.28 0.5 2.02 1 2.49 0.76 1.89 0.39 2.91 0.87 2.13 1.89 1.76 1.52
-2.28 1.26 0.76 1.76 2.13 -0.11 1.89 0.5 3.02 3.02 1.65 1.76 2.13 0.63 1.89 -1.37
-2.02 -0.63 1.89 -2.14 1.49 -2.29 2.28 0.26 2.26 -0.5 2.52 -1.78 2.78 -0.74 2.25 1.5
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-2.25 1.52 1.39 2.25 0.63 3.02 -1.26 3.8 -0.63 2.88 1.13 0.26 1.13 -3.28 1.52 -2.4
-2.02 -1.89 S
-2825.89 3012.57 1.36 -3.78 1.02 -3.28 2.02 -2.64 1.26 -1 0.24 -2.52 2.14 -3.28 2.13 -3.15
-1.65 -2.91 1.76 -3.38 1.63 -2.28 2.15 -2.52 2.52 -2.28 2.52 -2.38 1.5 -3.02 3.52 -5.55
-1.89 -3.26 1.89 -2.15 2.28 -1.89 1.88 -2.02 1.63 -2.78 S
-2862.87 2956.51 1.76 -2.89 1.75 -3.53 1.89 -3.41 2.02 -1.89 2.02 -1.39 2.02 -0.11 1.25 2.76
--0.52 4.43 1.15 2.63 1.5 1.64 -1 3.41 0.24 4.14 1.88 1.39 -1.26 3.78 -1.26 2.64
--1.12 3.28 0 3.54 -0.24 3.91 -1.15 4.01 -1.62 3.67 -1.89 3.51 -1.75 3.54 -0.76 3.02
--0.24 3.28 2.25 1.13 -0.5 3.28 0.87 1.39 S
-2870.16 3007.66 1.52 2.02 0.24 2.39 -1 2.91 0.37 1.89 0.63 2.76 -0.11 3.67 0.37 2.65
-0.89 2.25 0.24 3.41 -0.24 3.77 -0.26 2.78 0.13 3.52 1 1.89 1.02 2.64 -0.39 3.67
--0.76 3.38 -1.37 1.78 -0.76 2.63 0.88 2.64 0.63 2.52 -0.74 2.54 2.52 -3.04 0.87 1.89
-1.13 2.28 1.02 2.14 1.13 2.26 -0.5 3.14 0 6.56 2.52 -1.39 2 -2.02 1.89 -2.26
-2.02 -2.14 2.39 -1.39 2.78 -1.13 1.89 -1.25 0.87 1.25 2.15 -1.88 0.5 -2.15 2.26 -1.89
-0.89 1.26 2.26 -2.65 2.65 -3.14 2.25 -3.52 1.65 -4.54 1.25 -3.9 2.26 0.13 1.13 0.63
-1.13 1.5 S
-2915.32 3050.11 -0.24 3.41 0.24 3.28 0.39 3.51 -0.89 2.91 1.52 0.13 2.39 -1.65 2.26 -2.76
-2.02 -3.04 2.26 -3.64 2.15 -2.9 2.52 -3.39 2.75 -2.91 2.52 -3.41 1.15 -5.04 2.39 -2.64
-1.26 -3.02 0.37 -3.41 1.52 -3.65 1.76 -4.27 1 -5.16 1.39 -3.67 1.76 -2.52 0.25 2.15 S
-2948.04 3008.42 2.26 -1.65 2.38 -2.52 1.89 -1.39 1.89 -1.26 1.13 -1.5 1.13 -2.15 1.02 -3.15
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-2.02 -0.24 1.76 -0.52 1.52 -0.87 2.26 2.64 -1.76 4.14 -2.28 3.54 -1.76 1.63 -3.77 12.11 S
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--1.63 0.75 -2.02 3.78 -2 3.15 -1.88 1.26 -2.15 4.67 -1.26 -2.52 -1.89 3.14 -1.75 4.28
--1.39 4.8 -0.37 3.38 -1.26 4.3 -0.89 3.52 -2.25 4.79 -1.76 4.41 0.37 2.91 1.88 0.74
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-0 4.03 -1.02 3.28 S
-2961.37 3076.82 -1.62 3.15 -2.52 5.16 -1.76 3.15 -2.02 3.64 -2.25 3.16 -2.41 2.89 -2.76 3.28
--2.52 1.13 -2.39 1.39 -2.14 0.5 -2.62 0.63 -2.41 1.25 -2.52 1.15 -1.63 1.76 -2.12 0.5
--3.14 2.38 -2.02 3.9 -1.65 3.54 -0.74 4.28 -1.65 3.77 -0.99 3.91 -0.63 3.91 -0.63 3.41
--0.26 3.28 0.63 2.26 S
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--2.38 1.52 -1.5 2.88 -0.39 3.41 0.13 3.28 -0.87 3.91 0 2.89 -0.63 3.41 -2.65 3.54
-2.13 0 -2.63 3.9 2.52 -0.12 -2.14 4.14 0.13 2.4 -0.26 3.02 -0.24 3.02 -1.39 3.91 S
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--1.63 3.15 -2.14 3.14 -2.65 3.54 -2.13 2.13 -2.52 1.88 0.37 1.26 -2.25 3.41 -2.88 3.41
--2.65 3.41 -2.39 2.88 -0.26 1.76 -1.76 2.02 -1.52 0.89 -3.39 3.28 -0.26 1.26 -3.77 3.14
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--1 2.41 -2.02 1 -2.15 -1 -0.63 2.89 -2.52 1.02 -1.63 -0.63 -0.76 -0.89 -2.62 1.26
--2.52 0.99 -2.52 0.89 -3.14 1.13 -1.02 -1.63 -1 -1.76 -3.02 2.89 -2.39 2.38 -2.78 3.67
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--1.26 -0.63 1.76 -2.91 2.02 -2.25 2.02 -2.02 0.37 -1.89 -1.13 -0.89 -2.78 1.02 -1.13 -1.26
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--2.28 3.02 -1.76 2.65 -3.25 3.03 -2.91 2.76 S
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--1.12 2.14 -2.39 3.02 -2.76 2.54 -2.02 3.02 -2.02 2.65 -1.5 2.76 0.11 2.15 -0.24 1.52
-0.5 1.13 3.91 -2.64 3.14 -1.89 3.26 -2.52 1.76 1.39 -2 3.77 S
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-2.91 -0.5 -3.54 4.15 -2.26 3.27 -2.25 4.04 -3.15 3.64 -3.4 2.52 -3.02 1.65 -3.52 1.5
--3.14 1.02 -3.02 0.63 -2.15 -0.5 -1.49 -0.63 -2.28 0 -1.26 -1.02 -0.63 -1.5 -2.63 1.5
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--4.77 3.14 -2.65 2.9 -2.63 1.26 -1.02 1.37 -3.64 2.15 -2.39 1.39 -1.63 2.38 2.13 -0.49
--0.5 2.64 -3.02 3.02 -4.14 2.91 -3.78 3.02 -4.91 2.64 -3.41 1 -4.91 3.04 -5.27 2.64
--4.8 2.52 -4.14 1.76 S
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--3.52 -0.11 -2.78 -0.39 -3.41 0 -3.39 0.63 -3.64 0.76 -2.89 0.5 -0.63 -0.87 -2.52 -0.26
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--3.02 0.75 -2.65 -0.13 2.26 -1.62 3.77 -1.02 -2.52 -0.11 -2.63 -0.26 S
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--4.77 1.13 -3.39 1.02 -3.91 1.26 -3.14 1.13 -2.89 0.39 -3.28 0.63 -3.4 1.13 -2.76 0.24
--3.41 1.15 -3.52 2.02 -3.02 2.13 -2.89 1.89 S
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--2.02 0.75 -1.52 1.5 -1.89 1.39 -2.13 0.76 -0.13 1.13 3.28 -0.5 0.24 1.13 -2.38 1.15
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--4.03 0.24 -3.78 -0.37 -3.64 -0.26 -4.14 0.76 -3.65 1.02 -1.89 1.26 -3.54 0.5 3.77 1.13
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--4.78 0.52 -0.75 0.87 3.14 0.26 1.89 1.52 2.26 1.63 1.89 0.89 3.78 -0.39 3.64 -0.13
-2.38 0.76 4.04 0.39 S
-2559.94 3404.86 4.77 0.11 3.02 0.65 4.28 0.24 4.67 0 4.01 -0.5 2.78 -1.02 0.5 1.15
-3.15 0.5 3.39 -0.76 6.29 1.52 2.91 1.13 1.37 1.13 1.39 1.52 1.02 1.25 1.75 1.63
-2.13 1.39 0.89 2.02 1.76 1.26 1.76 0.89 0.63 1 -4.77 0.76 -4.77 0.39 -4.8 -0.39
--3.14 -1 -4.28 0.24 -3.64 1.39 -1.12 -1.26 -2.26 -1.13 -3.66 0 -4.14 0.76 S
-2575.79 3419.73 -2.13 1 -2.78 0 0.5 -1.76 -1.26 -1.65 -2.88 -0.63 -2.89 0.26 -1.15 1.26
--2.39 0.13 -0.74 -1.76 1.37 -1.02 -1.26 -1.26 -3.52 -0.63 1.76 -1.52 2.78 -0.11 -0.63 -1.39
--3.02 -0.76 -3.77 -0.5 S
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--3.78 -0.76 -3.28 -0.24 -3.52 0 -3.64 1 -2.26 1.26 -1.52 1.52 -2.38 -1.52 -3.91 -0.37
--3.89 -0.76 -3.53 -0.89 -3.39 -0.87 -3.14 0 -3.28 -1.02 -3.91 -0.37 -3.02 -0.76 -4.64 0.13
--3.28 1 -2.64 -1.5 1.52 -1.28 1.5 -1.89 0.89 -1.89 0.89 -1.26 3.02 -0.11 -0.26 -1.65
--4.14 0.5 -3.28 -0.87 -1.52 -0.52 S
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--2.25 -0.63 -3.52 0.37 -0.89 1.65 -2.88 0.75 -4.15 0.88 -3.77 0.26 -0.39 -1.65 S
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-4.92 0 4.28 0.39 1.89 -1.52 2.75 -1.12 3.52 -1.13 3.91 -0.89 2.78 -1.26 2.63 -1.26 S
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-2.38 -0.89 2.78 -0.76 S
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-1.76 -2.28 2.12 -1.75 2.02 -1.65 2.38 -2 0.89 1.37 2.38 -1.63 2.02 0.13 1.13 1.13
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--1.37 -2.38 0.87 -2.28 0.63 -2.89 1.89 -2.28 2.25 0.13 1.65 1 1.76 -1.63 1.39 -2.78
-0.13 -2.15 -2.78 0 1.13 -1.89 -0.13 -1.75 1.25 -1.39 1.89 -1.49 -3.38 -1.26 S
-2582.21 3308.12 -2.65 0.5 0.26 -1.52 S
-2579.82 3307.09 1.37 -0.63 1.02 1.65 S
-2582.21 3308.12 2.64 0.37 0.63 -1.39 -0.63 -1.13 -0.63 -1.25 2 -0.89 1.39 0.89 1.76 -1.76
-1.65 -1.78 0.5 -1.5 -3.15 1 -1.63 1.65 -3.41 1.75 -2.89 1.63 -3.64 1.78 -2.91 1.26
--3.52 -0.13 -2.52 -0.63 -1.62 -1.26 -0.63 -1.52 0.24 -1.63 0.5 -1.52 1.89 -0.37 0.52 -1.52
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-0.26 -2.25 2.25 0.24 1.39 -3.15 -2.26 0.63 1.76 -2.78 0 -1.63 2.13 -1.64 1.02 -2
-1.39 -2.64 1.99 -1.89 1.89 -1.65 2.28 -0.76 2.89 -0.12 0 -2.26 0.5 -2.28 S
-2587.61 3270.05 -0.13 -2.38 -0.24 -2.13 3.88 -0.76 3.28 -1.25 1.76 1.37 3.02 0 0.39 -2.13
--3.15 -0.39 -2.26 -0.74 -0.52 -1.26 -2.12 -0.39 1.13 -1.63 2.88 0.87 0.76 -1.26 -2.13 -0.37
-0.38 -1.52 3.02 -0.5 2.52 1.25 1.89 0 -2.15 -1.62 -2.12 -1.78 -3.14 1.39 -2.26 1.76
--3.27 1.02 -2.65 -0.26 0.63 -0.87 2.26 0.37 2.15 -0.75 1.63 -1.63 0.39 -1.65 2.52 -2.13
-2.52 -0.13 2.89 -0.63 2.15 -1.88 2.75 -1.78 3.78 -1.37 1.89 2 0.63 -2.13 2.88 -1.65
-3.78 -1.39 1.65 -2.52 2 -2.13 0.76 -2.78 0.37 -2.28 -3.64 -0.11 -0.37 3.15 -1.13 2.02
--1.76 2.39 -2.41 1.39 S
-2614.65 3240.84 -2 1.88 -3.53 -0.12 -2.89 1.63 -3.28 1.91 S
-2602.95 3246.14 -3.02 1.63 -3.02 1.52 -3.14 0.11 -2.02 2.02 -2.12 1.78 -2.02 0.87 -2.76 -0.99
--1.15 1.13 -2.38 0.37 0.13 -1.75 3.91 -3.91 2.63 -1.76 2.02 -1.88 0.63 -2.65 2.15 -1.63
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--1.5 -0.63 -2.91 2.29 -0.5 -1.79 0.39 -2.38 S
-2592.91 3220.68 -2.02 -0.89 -1.13 -1.5 1 -1.78 -2.89 0.39 -2.38 2.02 -0.39 -2.14 -0.24 -2.02
--1.02 -1.89 -0.37 -2.02 -0.75 -2.13 -1 -1.78 2.52 -2.52 -0.52 -2.02 -1.88 -1 -2.26 1
--2.38 -0.24 -0.63 2.38 1.89 1.63 -2.52 1.39 -2.02 0.5 -2.02 -1.12 -3.02 -0.37 3.27 -1.02
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--1.13 -2.15 -0.63 -2.25 2.52 -1.52 2.78 -1.88 -2.91 -0.76 -2.38 0 -2.76 0.37 -2.14 -0.37
-0.13 -2.02 3.02 -1.26 1.63 0.63 1.65 -2.38 -2.91 -1.14 -3.65 1.14 -3.14 0.24 -1.5 2.54
--1.25 1.99 -1.52 2.41 S
-2560.8 3186.68 -3.38 1.26 -2.65 0.5 -2.64 2.02 3.02 -1.02 2.91 0.13 2.89 -0.37 S
-2560.94 3189.2 2.26 0.37 2.41 0.5 2.88 0.13 2.13 1.39 1.39 2.28 0.13 2.13 -1.75 2.28
--2.15 1.63 -2.88 0.76 -2.89 0.26 -3.02 0.74 -3.04 0.76 -3.12 0.26 -3.04 -0.26 -3.02 -0.63
--1 1.65 -2.38 0.13 -1.13 -1.39 -2.65 -0.39 -3.28 0.89 2.65 0.24 1.25 2.41 -2.52 0.63
--2.78 0.5 -2.88 0 -0.26 -3.28 -1.5 1.89 -1.13 -2.15 -1.26 2.91 -1.12 -1.26 -0.39 -1.89
--2.39 0.76 -1.39 -1.65 -0.75 -2.52 -2.39 -1.39 -2.52 -0.5 -0.87 -2.88 -2.02 -1.15 0.5 -1.76
-1.39 -0.13 -1.52 -2.02 -0.64 1.65 S
-2514.25 3191.08 -1.12 -1.52 -0.13 2.65 -1.37 -2.02 -1.65 -1.49 1.65 -1.15 -2.78 -1.26 -1.13 -2.39
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--0.5 -2.39 -0.52 -2.64 -1.76 -2.02 -1.12 -3.14 -1.26 -2.39 -1.13 -2.28 -1.75 1.13 -0.89 -2.25
--1.13 -1.89 -2.64 -0.5 -1.63 -2.41 -1.62 -1.76 -2.02 -2.02 1.13 -1.63 -1.13 -1.78 0.63 -2.26
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-2.78 -1.15 2.63 -0.24 2.52 1.5 1.26 1.89 2.02 2.41 1.52 0.13 0.74 1.89 1.75 -1.26
-1.26 -3.04 1.52 -2.52 S
-2514.52 3132.12 1.63 -2.88 1.52 -2.65 2.25 -2.02 -0.5 -1.89 1.52 -2.02 0.37 -1.76 2.15 0.24
-2 0.13 S
-2525.46 3119.27 -0.63 1.75 1.15 2.52 2.13 0.26 1.88 0.26 0.63 3.28 -0.26 3.14 0 2.26
--0.62 2.64 0.13 1.89 1.76 2.15 1.89 1.63 -1.25 0.75 1.39 1.52 0.39 1.49 -1.26 1.65
--2.41 1.39 -2.39 1.39 -0.87 2.13 -0.26 2.78 -0.5 2.65 0.63 1.39 1 2.88 1.52 2.15
-1.25 1.52 1.76 1.76 0.25 1.88 1 2.02 -2.15 1 0.63 1.89 -0.63 1.26 1.15 1.15
-0.38 1.89 1.89 0 1.63 0.37 1.39 0.76 2.64 -1.13 1.13 -2.52 -1.25 -1.26 -0.37 -2.91
--1.25 -2.52 S
-2538.93 3168.4 -1.15 -3.01 -1.37 -2.65 -0.26 -2.78 1.13 -2.52 2.02 -2.39 0 -2.78 0.5 -1.75
-2.65 -0.89 1.76 -1 3.02 -0.26 2.39 1 2.28 1.52 2.25 1.52 2.15 1.39 3.26 0.87
-3.02 -1.5 1.65 1 2.13 -1.89 -3.14 0.13 -1.63 -2.41 -0.63 -1.5 -3.02 -0.89 -3.02 0.26
--2.39 -1.12 -2.28 -0.89 -1.5 -1.75 0.87 -2.29 1.52 -2.02 1.89 0 0.87 -2.64 1.02 -2.52
--1.13 -1.75 -1.89 0.13 -1.65 1.5 -1.99 1.02 -2.15 -0.89 -0.13 -2.88 -0.5 -1.89 0.89 -3.14
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--2.52 -1.39 -1.89 -2.02 S
-2532.64 3113.84 -2.78 -0.87 -2.52 -1.65 -1.89 0.26 -2.13 0.63 1.26 1 -1.52 1.78 -1.13 -1.52
--2.15 -0.76 -1.23 -1 -1.52 -1.52 S
-2517.04 3110.2 -2.02 -0.24 0.26 1.89 -3.28 0.99 -0.26 1.39 -2.13 1.13 0.76 2.78 1 2.88
-2.02 1.15 -0.26 1.76 -1.89 -0.26 -0.24 1.78 0.5 2.39 -0.26 1.76 -2.12 -0.63 -1.02 -1.89
--2.39 -0.76 -1.13 -1.39 -0.37 -1.75 0.24 -2.78 0.63 -2.12 1.75 -1.26 0.39 -2.78 1.39 -1.64
--1.02 -1 1.26 -1.26 -1.26 -1.52 -0.13 -1.76 -1.89 0.76 -2.26 -0.13 -1 -1.39 -3.28 -0.13
--2.02 -1.12 0.26 -2.26 1.5 -0.39 0.13 -1.26 -1.39 -1.5 -1.63 0.87 -0.13 2.78 S
-2495.77 3103.28 -1.12 -0.63 -0.5 -2.15 -0.76 -1.89 -1.13 -1.89 -1.52 -1.89 -2 -0.89 -2.41 -1.5
--2.13 -0.89 -0.63 -1.88 -0.26 -2.28 -1.5 -0.87 -1.89 -0.5 -1.65 -0.89 -0.63 -2.28 -2.12 0.39
--2.02 -0.39 -0.87 2.28 -2.28 0 1.26 -2.64 0.63 -3.28 -2.26 0 -2.65 -0.37 -1.13 1.89
--2.65 -0.39 -2.02 -0.87 -2.25 -0.39 0.13 -2.76 1.63 -1.02 2.02 0 2.14 -1.5 2.63 -0.52
-0.63 -0.87 1.65 -1.89 -0.39 -1.39 1.02 -1.39 1.89 -1.39 1 -2.38 -0.37 -3.15 -0.39 -3.17
--0.37 -2.39 -0.76 -3.14 -1 -1.39 -2.14 -0.5 -2.39 0.5 -3.52 0.63 -3.54 -0.87 -2.76 1
--3.14 0.63 -3.14 -0.26 S
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-0.26 -1.91 0.37 -2.76 -0.5 -2.41 -1 -2.62 -0.75 -3.28 S
-2438.29 3031.1 -1.52 -1.79 -0.63 -2.75 0.89 -1.89 1.89 -0.13 -0.62 -2.78 -0.26 -2.78 -1 -2.39
-2.78 0.39 2.25 -0.66 1.89 0.89 1.89 -0.13 2.13 -1.5 2.15 -4.3 2.26 -1.13 2.38 2.28
-2.29 0.87 2.75 0.39 2.64 0 2.65 -0.13 2.64 0 1.63 2.26 2.26 2.78 2.28 0
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-2.14 1.02 2.52 0.86 2.39 1.89 2.15 1.52 S
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--3.54 -0.5 -2.75 1.13 -2.28 1.15 -1.26 1.26 -0.74 2.39 -1.39 2.14 -2.25 1.13 S
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--2.02 -0.76 -2 0.87 -0.63 2.28 1.5 1.52 1.76 1.99 0.89 2.54 -0.62 2.26 -1.63 0.76
--1.02 3.28 1.39 1 S
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-2.39 1.37 2.76 0.89 2.41 0.5 2.38 1.39 3.26 1.75 3.78 0.13 1.39 1.88 3.41 0.89
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-3.39 -1.78 2.78 0.13 2.89 0.49 2.78 0.63 2.89 0.13 S
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--0.39 -3.28 -0.99 -2.38 -1.39 -2.39 1.89 -0.76 -1.39 -2.52 0.13 -2.78 S
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-0.74 2.91 -2.76 -0.26 -3.14 0.26 -0.13 1.89 -1.52 1.76 -2.75 0.26 -1.76 -1.02 S
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--1.52 3.14 -0.5 3.78 -1.39 -4.04 1 -2.76 -0.86 -2.91 1.49 -3.15 -0.5 -2.52 S
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--0.26 3.77 -1.63 2.13 -0.39 3.28 0.13 3.41 1.13 3.41 -1.76 3.14 -0.37 2.89 -0.39 3.66
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-2592.51 3057.79 2.39 -1.89 1.39 -2.12 2.52 -1.39 2.78 -0.26 S
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--2.14 -1.02 0.5 -2.76 -1.13 -2.28 S
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--2.76 -1.39 -1.75 -2.65 -2.52 -1.37 -1.89 -2.02 -0.76 -2.41 -1.75 -1.49 S
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-2.25 -0.76 S
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-0.63 -2.02 -1.63 -0.62 2 -3.15 1.65 -2.52 1.76 -2.64 2.26 0 2.78 0.63 1.39 -1.15
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--2.38 -0.13 -0.5 1.52 S
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-0.37 -2.52 0.39 -3.15 0.11 -2.78 S
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--0.13 3.66 -1.89 2.65 0.89 1.26 0 1.88 -2.25 1 -3.04 1.13 -1 1.26 -0.76 2.78
--0.37 2.39 -0.89 -2.63 -1.37 0.37 -1.26 -2.14 1.37 -1.63 -1.63 0.13 0.89 -2.52 S
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-2.52 1.39 0.26 1.89 S
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-2738.32 3164.5 -1.52 -0.76 -1.89 -1.5 -1.37 -2.41 -1.52 -0.87 0.39 -3.04 0 -2.38 2.13 -3.41 S
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--3.65 3.28 -3.53 2.39 -3.39 1.25 -4.03 1.76 -3.52 1.78 -0.89 -0.89 1.78 -1.26 2.25 -0.89
-3.02 -1.89 2.89 -1.89 2.91 -1.89 S
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-1.02 -3.28 S
-2562.83 3158.57 2.38 -1.26 2.02 -1.89 1.39 -1.89 1.13 0.37 0.13 1.52 2 0.63 0 1.89
--0.87 1.65 -1.75 1.5 -2.15 0.26 -1.76 0.89 -1.76 -0.52 -0.89 -1.75 0.13 -1.39 S
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--1.52 1.39 -1.13 2.13 -2.15 0.76 -2.25 0.13 1.5 -1.02 1.52 0.13 0.89 -1.62 -1.65 -0.63
-0.76 -2.15 S
-2714.93 2701.41 -0.39 -2.39 0 -2.78 0.89 -2.26 -0.13 -3.91 -0.24 -3.28 1.63 -2.65 1.76 -1.63
-1.89 -1.15 S
-2720.33 2681.38 2.65 0.76 2.38 1.65 2.75 1.39 2.02 -0.39 2.28 3.14 1.24 2.65 1.39 3.02
-1.25 2.02 0.89 2.52 0.87 2.65 0.89 2.4 1.13 2.65 1.39 2.62 1.13 2.52 0.89 2.64
-1.26 2.65 1.13 3.04 1.39 3.14 1.63 3.78 0.87 3.02 0.89 3.54 0.26 2.52 1.37 1.76
-0.76 2.64 0 4.91 1.89 -2.13 2.02 3.39 -0.13 2.91 -0.5 4.4 -1 3.28 -0.26 3.41
--1.12 2.89 -1.65 2.64 -2.25 -3.02 -0.13 -3.01 -0.63 -2.55 -2.26 -1.37 -2.65 -1.02 0.26 -2.89
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--2.29 -0.37 -1.75 -4.67 S
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--1.13 -2.52 -2.14 -2.65 -2.25 -3.67 S
-2776.82 2716.04 0.5 -1.89 2.02 0.37 0.63 1 -1.02 1.39 -2.13 -0.87 S
-2788.02 2721.07 2.13 0.37 0.39 2.02 -1.13 0.89 -1.39 -3.28 S
-2759.59 2919.86 1.88 -0.37 1.89 0.63 2 2.39 -2 -0.26 -2.52 -0.24 -1.26 -2.15 S
-2764 2550.76 -0.76 -2.65 -2.78 -2.39 2.64 0.87 0.37 -1 1.78 1.39 1.37 -0.13 2.15 2.02
--2.39 -0.39 -1.52 -0.37 0 1.5 0.39 2.02 -1.25 -0.87 S
-2916.08 3024.42 2.02 -5.43 1.63 -5.79 S
-2952.45 2957.4 2.63 -0.76 S
-2959.61 2950.58 1.76 -1.62 2.15 -1.88 S
-2963.52 2947.07 -0.76 3.27 -2.65 2.39 -0.5 -2.15 S
-2968.55 2936.74 1.13 -3.91 1.13 -1.25 1 1.75 -2.52 4.8 -0.74 -1.39 S
-2883 2948.83 1.14 -3.91 0.99 -2.65 1.89 -4.04 1.75 -2.25 1.65 1.13 2 2.64 1.02 3.41
--0.26 3.91 -1.13 3.9 -2.02 2.02 -2.02 2.75 -2.26 2.41 -2.39 2.52 -2.89 0.63 1.5 -2.28
--0.13 -3.52 0.63 -3.54 0.52 -3.14 S
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--1.39 3.77 -1.63 2.15 -0.52 -2.28 -0.62 -2.39 0 -2.39 1.02 -4.54 0.63 -3.54 S
-2909.92 3211.24 3.02 -2.91 3.41 -2.65 0.87 0.89 2.41 -1.65 -3.54 4.43 S
-2916.08 3209.36 -2.65 4.14 -3.13 3.91 -3.66 4.16 -3.26 4.15 -3.02 2.64 -0.89 -0.89 1.89 -4.01
-2.75 -4.04 2.65 -3.64 3.14 -4.54 S
-2834.31 3304.71 2.78 -0.39 -1.02 2.15 -2.39 1.52 1.63 0.23 2.91 -1.5 2.52 -2.65 2.75 -1.39
-2.91 -1.64 -0.26 2.54 -3.78 4.27 -3.78 2.25 -4.14 3.04 -3.52 2.65 -2.14 0.11 -2.65 0.89
-1.26 -2.52 -1.26 -0.13 1.89 -2.78 3.41 -3.25 2.89 -3.41 S
-2825.89 3319.45 3.02 -0.76 -0.26 2.15 -2.75 1.89 -2.28 1.63 -2.75 3.04 0.76 0.99 -3.15 2.29
--2.78 2.38 -2.12 0.5 0.5 -2.02 2.13 -2.76 3.14 -2.28 0.89 -2.39 2.76 -1.76 2.91 -2.91 S
-2823.37 3315.54 2.76 -1.39 S
-2826.13 3314.15 -2.13 3.28 -0.75 2.28 -3.28 2.64 -2.25 3.25 -3.02 3.41 -1.76 2.38 -3.64 3.54
--0.76 1.89 -2.02 3.02 4.02 -2.75 2.91 -1.15 2.02 0.13 -0.52 1.52 -5.04 3.51 -4.91 4.04
--1.49 -0.5 -3.15 2.02 1 1.63 -3.14 4.16 -5.77 4.04 2.88 -0.26 -5.66 2.65 -2.02 2.52
--2.76 1.75 4.28 -1.49 -4.14 3.38 -2.65 1.02 -3.14 2.02 -2.15 -0.13 -4.38 1.39 -2.78 1.63
--4.14 1.13 -3.02 0.39 -2.41 1 -1.88 1.88 -2.76 0.52 -3.64 1.89 -4.27 1 -2.52 -0.37
--1.26 -1.02 -2.39 0 -2.52 0.63 1.26 -2.39 2.52 -0.63 -1.39 1.39 1.63 -0.13 1.75 -1.76
--0.24 -1.25 4.64 -1.89 S
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-3.78 -1.89 3.28 -2.39 3.38 -3.14 3.91 -3.28 -2.28 0.75 -3.51 1.52 3.27 -2.41 3.15 -1.26
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-1.5 -2.52 4.04 -3.28 3.77 -3.41 2.89 -2.78 2.52 -3.02 S
-2737.33 3372.35 2.52 -0.5 0.63 0.75 3.88 -0.52 -3.77 2.28 -3.39 2.52 0.13 -1.39 0.5 -1.63
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--3.76 1.52 -4.29 2.02 -2.13 2.14 -4.28 2.26 -3.91 1.89 S
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--2.78 1.78 -2.26 1.89 -1.39 2.26 -1.13 2.28 S
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--1.25 -0.11 -0.5 -2.02 -1 0.74 -1.52 0.13 -0.24 -2.64 S
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-2.78 3.04 2.75 3.14 2.91 3.28 3.02 3.52 3.02 3.54 2.52 2.89 2.65 2.9 S
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-1.52 1.89 1.5 2.02 S
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-1.5 2.02 1.39 1.99 1.52 2.15 1.38 2.02 1.64 2.39 1.5 2.4 1.65 2.26 1.89 3.02
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-3.52 9.34 1.75 4.77 1.26 3.28 1.13 3.4 1.25 3.28 S
-3075.84 2713.89 1.52 4.9 1.63 5.06 1.52 4.9 1 3.54 1.02 3.65 1 3.64 1.13 4.3
-1.13 4.41 1.02 4.28 1 4.27 1.02 4.17 0.88 4.17 0.25 1.5 0.13 1.52 0.11 1.52
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-0 2.41 -0.13 2.39 S
-3100.89 2854.73 -0.13 3.14 0 3.28 0.13 4.03 0 4.02 -0.26 0.39 -0.37 0.37 -0.26 2.78
--0.24 2.78 0.13 3.28 0.11 3.27 0 3.02 -0.11 3.15 0.24 5.16 0.26 5.3 0 4.9
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--0.37 0.63 S
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--0.12 3.17 -0.26 3.78 -0.24 3.77 0.5 1.26 0.5 1.13 -0.13 4.04 -0.24 3.91 0 3.91
--0.12 3.78 -0.63 1.52 -0.63 1.39 0 -9.33 -1 5.04 -0.39 -2.52 -0.37 -2.38 -0.63 0
--0.62 -0.13 S
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--0.39 -3.91 -0.5 -3.91 0 -3.28 -0.13 -3.28 0.26 -2.52 0.24 -2.39 S
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--1.37 2.28 -0.52 -0.5 -0.37 -0.52 S
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--0.76 1.89 -0.39 1.15 -0.5 1.26 -0.37 1.37 -1.65 3.54 -1.63 3.54 -1.63 3.52 -0.26 -0.26
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--1 1.89 -1.13 1.78 1 -2.41 0.89 -2.52 0.86 -2.39 S
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--0.5 2.13 -1.02 2.91 -0.87 2.89 -0.89 2.78 -0.87 2.65 -0.89 2.64 S
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-0.13 2.28 0.11 2.25 0.13 2.29 0.13 2.12 0 2.15 0.13 2.15 0.13 2.02 S
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-4.27 -0.5 4.15 -0.52 4.27 -0.5 S
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--8.81 6.04 -4.4 2.9 -4.54 3.02 -4.52 2.89 -2.15 1.28 S
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--5.9 0.89 -5.93 0.76 -6.03 0.87 -5.9 0.63 -6.05 0.76 -6.04 0.63 S
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-6.92 -0.39 6.92 -0.63 7.04 -0.63 7.05 -0.62 S
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-2.13 2.91 2.02 3.02 2.13 2.91 2.14 2.88 2.26 3.02 2.14 3.04 2.26 3.02 2.38 3.02
-2.28 3.04 2.39 3.02 S
-1972.18 3321.33 1.63 2.02 1.65 2.02 1.63 2.02 1.63 1.89 1.65 2.02 1.5 1.89 6.55 7.81
-3.26 3.78 3.4 3.91 3.52 4.01 3.54 3.91 3.64 4.03 S
-1850.02 2917.96 0 -2.02 0.13 -2.02 0 -2.15 0.14 -1.12 0.11 -1 0.13 -1.13 0 3.52
--0.13 3.64 -0.11 0.76 -0.26 1.52 S
-2217.62 3456.51 -0.13 -0.39 -0.13 -0.24 -0.36 -0.13 -0.26 0 0.52 0.37 S
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-2.29 1.26 2.25 1.26 0.63 0.63 0.63 0.52 1.13 0.74 1.13 0.76 S
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-3.36 -3.69 3.93 5.17 3.39 -3.6 3.47 -3.52 3.84 5.12 3.5 -3.45 3.86 5.08 3.5 -3.37
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--2.06 1.39 p
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-2.21 -0.45 1.82 4.6 2.08 -0.43 1.73 4.6 1.76 4.58 1.78 4.56 1.8 4.53 1.82 4.5
-1.52 -0.3 1.73 4.49 1.41 -0.26 1.63 4.49 1.28 -0.21 1.3 -0.22 1.32 -0.17 1.26 4.51
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-2.38 1.57 1.59 0.97 0.87 0.54 2.5 1.48 2.56 1.45 2.61 1.41 2.67 1.35 2.71 1.32
-2.78 1.28 2.79 1.24 3.71 -2.95 0.26 0.11 2.45 1 2.76 1.08 2.8 1.02 2.82 0.98
-2.88 0.93 p
-2.91 0.89 -1.23 1.47 -1.56 1.84 2.71 0.79 0.39 0.11 3.15 0.84 0.99 0.26 2.17 0.52
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-10.79 1.32 13.2 1.63 13.17 1.08 13.2 1.09 13.17 0.54 13.19 0.54 26.37 0 13.2 -0.54
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-0.42 -5.84 P
--3.85 5.8 -3.82 5.95 -3.66 6.01 -4.67 0.02 -3.65 6.08 -3.54 6.14 -3.41 6.16 -3.3 6.18
--3.19 6.25 -3.08 6.25 5.03 -0.37 -2.91 6.25 -2.8 6.25 5.2 -0.48 -2.64 6.23 -2.54 6.25
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--0.02 6.77 0.09 6.77 0.2 6.75 -5.45 2.45 0.3 6.79 p f*
-0 155 255 rG
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-0.29 -0.26 0.3 0.09 -0.32 0.22 0 3.15 5.75 -3.87 1.15 -1.45 0.78 -6.43 -1.02 -1.41
--1.78 2.2 -4.49 3.78 -6.08 4.8 -0.84 1.08 f*
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-539.87 1158.92 -0.29 0.26 0.26 0.04 0.32 -0.22 -0.3 -0.09 f*
-255 0 r6
-544.71 1431.38 -3.89 3.84 3.3 5.75 3.84 -3.84 3.93 -3.75 4.01 -3.69 4.11 -3.62 -3.06 -5.73
--4.17 3.61 -4.08 3.69 -3.99 3.75 f*
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-559.87 1401.8 -4.44 3.43 2.84 5.82 4.38 -3.47 4.47 -3.39 -2.73 -5.77 -4.52 3.38 f*
-0 155 255 rG
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--3.93 2.52 -0.11 -0.07 -2.56 3.37 0.52 5.27 1.02 5.51 -1.7 3.91 1.8 5.88 6.04 7.23
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-3.28 -2.82 P
-3.99 -2 4.95 0.41 1.54 0.67 6.29 0.93 0.13 0.02 3.41 -2.46 3.56 -2.45 -1.93 -2.52
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--5.79 -2.71 -5.21 -6.1 -2.76 1.54 1.61 6.21 1.5 1.71 -1.59 -0.95 p f*
-567.05 1055.75 -4.7 6.54 1.56 3.14 3.88 -3.99 -0.58 -4.54 -0.16 -1.15 f*
-2 239 204 rG
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-2.39 2.32 3.84 4.3 6.32 5.93 0.65 0.52 4.12 6.68 -0.52 4.23 2.84 5.84 1.91 2.25
-4.95 5.23 2.78 3.1 5.77 0.68 0.11 -0.16 5.69 0.76 6.18 1.89 6.45 2.62 2.23 2.43
--1.11 1.21 -0.29 2.3 0.46 4.14 4.04 5.04 0.33 0.33 7.16 4.03 3.17 2.73 3.69 4.78
-3.73 2.71 3.75 2.78 5.75 4.08 1.32 1.04 7.51 4.06 3.75 1.37 4.23 1.98 7.84 2.87
-0.26 0.15 8.45 3.64 1.34 0.57 7.66 3.28 1.23 0.52 8.1 3.3 0.37 0.15 6.96 3.21
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--0.75 -0.87 -5.02 -4.69 -5.58 -6.96 -1.21 -1.64 1.32 0.13 5.9 1.45 5.73 3.95 5.71 4.82
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-4.79 5.63 2.07 4.52 1.64 1.37 4.84 3.32 6.36 3.2 3.43 3.6 3.65 2.95 6.18 1.61
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--3.28 1.35 -1.06 0.39 -3.36 2.8 -1.3 3.08 0.87 2.71 2.11 3.63 -1.04 3.47 -2.91 1.43
--1.69 0 -3.15 2.84 0.22 3.41 -0.06 2.49 -2.93 2.95 -1.37 1.11 -1.95 1.52 -0.79 2.95
--0.43 1.5 0.13 5.5 -3.04 2.82 -0.11 0.13 -2.52 2.99 -0.43 4.84 1.2 5.99 0.41 1.22
-0.34 4.32 -1.45 3.84 0.41 5.1 1.32 5.6 0.2 0.37 2.48 5.92 0.47 4.82 0.66 4.62
-0.04 0.24 2.63 5.86 2.59 3.93 1.04 2.3 1.63 5.02 1.87 5.05 0.52 4.34 -0.65 3.78
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--5.86 -2.7 P
--5.79 -3.32 -5.73 -3.56 -0.68 0.13 -5.25 -1.66 p f*
-0 155 255 rG
-567.29 1049.59 -0.08 5.73 4.29 -6.29 0.93 -2.11 0 -6.14 1.15 -3.86 2.23 -6.19 1.68 -6.09
-2.75 -6.17 3.02 -3.52 0.07 3.26 -2.58 6.12 -3.62 6.27 -2.76 6.2 -1.93 3.97 0 6.14
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--3.04 6.18 -2.65 6.19 -2.14 6.14 -2.39 6.23 -2.11 6.2 -1.7 6.19 f*
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--2.3 -5.77 -4.99 3 -4.93 3.06 f*
-7 193 59 rG
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-6.12 5.79 1.48 1.61 4.82 4.95 6.3 5.01 1.41 1.36 1.78 5.36 -0.45 4.23 2.75 5.66
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-0.7 0.5 6.53 4.84 2.89 2.07 3.71 2.93 5.55 2.99 6.96 2.54 0.65 0.3 8 3.19
-2.72 1.28 6.01 2.63 3.73 1.54 5.16 2.19 3.59 1.54 5.73 2.32 2.47 1.08 7.29 2.87
-0.82 0.24 7.25 2.89 1.17 -0.13 0.89 0.89 3.78 2.04 3.93 2.95 0.93 -0.13 -3.82 -2.95
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--1.19 -4.19 -4.62 -5.56 -5.75 -4.58 -3.23 -4.11 3.43 0.74 5.75 4.02 4.04 4.27 1.61 4.04
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-6.25 6.25 1.78 2.11 0.65 4.56 4.88 5.64 2.82 1.93 4.3 5.42 0.37 0.57 6.79 5.64
-5.95 0.63 6.12 1.37 6.8 3.75 3.86 2.7 3.36 2.11 6.75 2.91 1.37 0.8 0 -20.03
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-0.28 5.47 P
--2.34 3.23 -1.04 4.23 -2 3.47 -1.32 3.93 0.78 4.43 0.04 1.02 0.41 5.03 0.44 4.92
-0.95 3.28 0.91 2.5 -0.75 3.96 1.32 5.21 1.29 4.21 0.41 1.08 0.08 4.3 0.67 4.56
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-2 239 204 rG
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--2.75 6.17 -1.68 6.09 -2.23 6.19 f*
-110 210 9 rG
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-6.14 6.57 0.11 0.09 6.25 5.13 5.88 5.73 0.76 4.77 -1.12 3.86 3.52 5.6 0.58 0.63
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-6.4 1.96 3.89 1.75 2.82 1.09 7.34 4.32 1.11 1.11 1.65 3.88 6.55 3.63 3.25 1.84
--0.15 3.41 -0.57 0.17 0 6.1 0.54 0.67 3.11 3.95 -2.84 1.28 0 2.67 2.5 1.28
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--5.6 -2 4.17 -1.21 4.88 2.65 -3.45 0.56 0 10.85 5.32 -0.58 6.64 1.13 6.23 2.11
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-3.32 -2.17 4.16 -1.22 3.13 -2.4 3.77 -1.41 0.2 0 6.4 1.54 1.02 0.43 5.18 3.65
-3.19 4.94 P
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--1.28 0.73 0 11.41 4.12 3.37 -0.15 3.43 0.33 3.58 1.19 1.11 2.76 3.71 2.21 4.11
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--4.04 -4.27 -5.75 -4.02 p f*
-255 0 r6
-589.3 1640.39 -5.58 -8.06 4.93 1 4.73 4.63 -3.95 2.49 -0.07 0 -0.07 -0.06 f*
-2 239 204 rG
-587.7 1660.59 -0.29 2.32 1.22 1.11 5.16 2.02 -6.1 -5.45 f*
-255 0 r6
-591.62 1660.35 -3.43 -6.42 1.17 0.13 2.32 0.26 4.91 2.41 1.3 0.63 4.32 3.58 1.37 5.14
--3.3 0.76 -6.66 -4.45 -2 -2.04 f*
-2 239 204 rG
-595.92 1646.86 -2.87 0.3 3.54 3.75 2.02 -0.84 -2.69 -3.21 f*
-255 0 r6
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-0 155 255 rG
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--2.93 -2.17 -1.91 -3.84 3.76 -2.73 0 -2.96 0.06 -0.17 1.72 -5.95 3.6 -5.84 0.5 -2.11
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--0.06 1.67 -1.02 4.36 -1.75 5.95 0.06 0 -0.06 0.11 -0.42 5.84 -3.95 5.92 f*
-2 239 204 rG
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--3.73 -0.52 -5 5.55 -4.88 5.62 -4.77 5.71 -4.64 5.75 -4.53 5.8 -4.41 5.86 f*
-2 239 204 rG
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--3.64 5.82 -1.43 3.86 -0.5 2.11 -3.6 5.84 -1.72 5.95 f*
-7 193 59 rG
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--1.95 -0.52 -4.04 -1.06 f*
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-110 210 9 rG
-622 929.14 -1.48 2.78 1.24 3.28 -0.84 1.78 1.63 -1.71 0.67 -1.26 2.08 -4.55 -0.61 -2.67
--2.69 2.37 f*
-255 0 r6
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-0 255 r6
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-0 -4.04 -2.5 -0.76 1.97 -0.56 0.63 1.19 -0.11 0.13 0 4.04 2.23 1.24 6.92 2.5
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--7.34 -4.32 -2.82 -1.09 -3.89 -1.75 -6.4 -1.96 f*
-255 0 r6
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-0 255 r6
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-0.17 -0.21 0.69 0.36 0.43 1.57 0 2.02 0.24 0.24 1.65 0.89 6.58 1.32 6.36 3.41
-2.3 0.93 7.53 3.54 1.24 0.54 8.44 3.5 0.21 0.08 8.25 3.52 1.02 0.41 6.66 2.91
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--4.41 -2.88 -5.88 -2.82 -0.8 -0.22 -8.29 -2.17 -1.06 -0.43 -6.53 -3.28 -3.02 -1.52 -4.29 -2
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-0.24 3.19 4.52 3.34 3.97 3.21 4.64 2.7 1.26 0.39 6.81 1.75 3 -2.25 -1.15 -3
--3.29 -2.91 -1.96 -2.97 0.22 -0.83 5.58 -0.89 6.75 0.67 6.46 0.15 0.79 0.2 7.16 2.17
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-1.56 -2.95 -4.42 -2.95 -1.24 3.26 -2.41 2.47 -1.8 2.54 -0.13 0.24 0.02 0.02 2.12 5.21
-1.43 3.1 0.59 1.89 1.39 4.49 1.65 2.97 1.15 2.13 1.91 4.49 -2.06 2.48 0.35 3.64
--0.3 3.28 1.08 3.86 0.22 0.39 3.61 4.49 -1.41 2.73 0.07 3.3 3.36 3.52 1 1.23
--0.89 2.34 -0.2 0.48 0.23 0.29 6.49 4.16 1.29 1.15 4.03 4.16 1.96 3.47 0.02 0.02
-3.47 3.75 2.32 1.5 0 -30.04 -0.39 -0.02 -1.22 -0.57 1.26 0.22 0.35 0.36 0 30.04
-1.58 1.02 2.32 1.69 1.65 3.15 4.38 3.54 0 2.8 1.15 2.95 1.26 0.65 6.01 2.93
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--1.91 -1 -5.05 -3.6 -1.32 -0.93 -7.08 -3.73 -5.87 -2.35 f*
-255 203 0 rG
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-679.95 1633.25 -4.16 -3.36 4.44 1.34 1 1.29 -1.28 0.73 f*
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--0.54 -0.21 -7.9 -3.45 f*
-255 203 0 rG
-679.1 1709.75 -0.17 0.21 1.3 1.71 -0.43 -1.57 -0.69 -0.36 f*
-255 G
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-5.19 3.78 1.91 -2.8 5.16 3.73 5.21 3.67 5.27 3.6 5.29 3.54 5.36 3.45 5.4 3.4
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--5.21 -3.78 f*
-110 210 9 rG
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-7 193 59 rG
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--2.62 -2.02 -4.14 -4.23 f*
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--3.32 2.17 -3.17 2.32 -3.26 2.23 -3.53 1.93 -2.89 0.34 -4.38 -2.14 -2.91 2.64 -2.26 3.26
--0.67 4.69 -0.34 2.3 f*
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-7 193 59 rG
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-0 155 255 rG
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--3.78 2.17 -3.71 2.24 -3.64 2.28 f*
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-0.95 0.61 3.26 -1.91 -3.41 -4.77 -0.32 -0.45 -4.8 0.65 -4.64 0.89 -4.47 1.15 f*
-255 203 0 rG
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-6.53 3.28 1.06 0.43 8.29 2.17 0.8 0.22 5.88 2.82 4.41 2.88 3.64 2.91 0.78 -0.11
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--3.21 0.39 0.84 0.52 3.89 2.34 3.99 2.25 -1.02 0.46 3.14 0.71 4.71 -2 3.38 -0.02
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-3.75 1.37 2 2.2 1.06 2.78 1.29 1.84 0.41 0.67 2.23 2.3 2.61 2.11 3.54 1.54
-2.69 2.15 3.71 1.41 3.38 1.65 3.67 1.46 1.21 1.15 1.31 1.39 3.27 1.93 3.82 1.41
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-0.61 2.48 1.02 2.47 0.63 1.82 0.35 0.67 0.28 0.13 4.43 1.97 3.88 2.09 1.3 2.39
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--3 2.25 -6.81 -1.75 -1.26 -0.39 -4.64 -2.7 -3.97 -3.21 -4.52 -3.34 -0.24 -3.19 -2.65 -1.17
--2.34 0.89 -2.17 1.45 p f*
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--3.62 -4.68 3.58 -2.17 0.35 -0.22 -0.95 -0.61 -5.93 -2.08 -0.78 0.11 -4.02 1.7 f*
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--4.71 -2.04 -6.1 -2.65 -0.65 -0.17 -7.62 -2.5 -1.58 -0.59 -2.84 -1.06 -3.71 -1.37 f*
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-0 26.63 0.52 -0.09 4.77 4.19 3.17 -0.48 3.15 -0.48 -5.02 -4.21 3 -0.52 2.93 -0.54
--5.32 -4.14 2.78 -0.56 2.73 -0.59 1.43 -0.31 0 -14.49 -3.8 -1.34 -0.43 -0.15 -3.14 -0.89
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-1.74 -1.04 1.67 -1.04 1.58 -1.11 1.52 -1.11 1.46 -1.15 1.34 -1.2 1.28 -1.19 1.2 -1.24
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--4.34 -2 P
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--6.03 0.61 -2.97 0.37 3 2.34 -2.69 0.34 -2.67 0.38 -2.64 0.39 -2.61 0.41 -3.99 -2.14
--2.82 0.5 -2.8 0.54 -2.76 0.55 -4.82 -1.89 -2.95 0.67 -2.91 0.67 -2.84 0.72 -2.8 0.74
--2.73 0.76 -2.69 0.78 -6.3 -1.3 -2.82 0.91 -2.78 0.91 -2.71 0.93 -6.99 -0.89 -2.82 1.06
--2.75 1.08 -2.67 1.11 -2.58 1.13 -2.52 1.13 -2.45 1.15 -2.34 1.17 -2.28 1.17 -2.19 1.2
--2.12 1.2 -8.55 0.28 -2.15 1.3 -2.04 1.32 -1.95 1.32 -1.87 1.3 -1.78 1.32 -1.7 1.32
--9.13 1.09 -1.65 1.43 9.2 -1.19 -1.52 1.32 -1.41 1.3 -1.34 1.32 -1.24 1.3 -1.17 1.3
--1.07 1.29 -0.97 1.28 -0.91 1.28 -0.8 1.28 -0.74 1.24 -0.65 1.25 -0.56 1.22 9.39 -1.97
--0.5 1.15 -0.43 1.13 -0.34 1.13 -0.26 1.11 -0.21 1.11 -0.14 1.09 -9.24 2.38 -9.2 2.59
--9.18 2.75 0.07 1.26 0.16 1.21 -9.03 3.06 0.3 1.26 0.39 1.24 0.46 1.19 8.83 -3.19
-0.48 1.15 0.54 1.13 0.63 1.11 0.7 1.09 0.76 1.06 0.84 1.05 0.89 1.02 0.97 1
-8.31 -3.32 0.96 0.96 8.31 -3.19 0.93 0.89 1 0.89 1.04 0.87 1.13 0.84 -7.97 3.32
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--4.88 -1.21 -3.34 0.93 -1.45 3.37 f*
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--6.07 -2.06 0.32 -0.8 -3.04 -1.8 -2.71 -1.02 0.7 -1.47 -5.92 -2.37 0.78 -1.54 f*
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--6.34 0.28 -4.53 0.15 -1.8 0.04 -0.74 -1.71 -0.67 -1.72 -0.29 -0.8 -0.33 -0.93 f*
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--0.37 0.16 f*
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--3.25 3.34 1.21 2.76 0.41 0.59 0 3.39 1.93 0.61 -0.21 2.91 -1.72 3.49 -5.2 1.54
-0 9.14 P
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--3.54 -1.06 -2.88 -4.49 -0.2 -0.2 -3.43 -3.17 -3.08 2.89 -1.24 2.11 -0.76 2.82 p f*
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-939.75 1538.26 -0.11 0.93 1.02 0.06 -0.91 -0.99 f*
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-939.84 1537.21 -0.09 1.05 0.91 0.99 1.09 0.07 -1.91 -2.11 f*
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-939.95 1536.2 -0.11 1.02 1.91 2.11 1.11 0.07 -2.91 -3.19 f*
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--0.24 0.11 0 1.67 3.56 -1.47 0.05 -0.04 -0.02 -0.11 -0.29 -4.94 -0.93 -5.12 -1.08 -0.98
--0.91 0.85 -2.34 4.88 f*
-7 193 59 rG
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-3.52 1.41 3.47 1.46 2.8 1.56 0.43 0.83 2.84 3.71 0.57 1.06 1.7 4.25 0.34 1.15
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-0 21.42 1.41 1.37 2.69 2.3 2.43 2.5 2.95 2.08 0.17 0.07 4.19 1.02 4.43 0.29
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--5.49 3.66 -5.25 4.38 -3.08 3.17 -0.95 4.78 6.29 -1.07 5.84 -2.86 0 -3.59 -1.63 -1.49
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--2.62 5.82 -1.22 2.3 -5.82 4.08 -2.69 2.99 -2.93 4.3 -2.52 2.38 2.67 0.96 0.5 1.48
--0.43 1.13 -4.17 1.02 -1.98 0.09 -2.67 2 -3.45 2.32 -0.11 0.2 -1.84 3.54 0 3.69
-1.63 0.8 3.47 0.89 2.49 -0.15 6.27 -3.12 0.57 -0.54 5.82 -5.8 6.14 -3.15 4.28 1.67
--3.13 5.54 -1.73 2.19 -3.02 3.88 -3.99 5.56 -0.15 0.19 -4.66 5.51 -2.7 2.28 -0.46 0.35
--5.82 4.23 -0.91 1.08 -4.58 4.32 -0.3 3.73 1.09 3.37 0.18 0.37 0.3 3.19 1.61 3.3
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--2.06 0.99 -2.4 1.76 -3.93 2.88 -3.04 4.06 -1.7 3.86 2.91 2.41 2.02 0.8 3.28 -0.15
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-5.73 -2.8 P
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--8.09 5.16 -3.11 1.85 -4.82 2.63 -7.86 4.05 -5.57 0.13 -0.96 -1.99 -2.41 -1.72 -2.75 -1.15
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--0.08 -0.07 -0.24 -0.39 -2 -2.93 -2.34 -3.23 -2.26 -3.37 -2.69 -2.97 -2.58 -3.1 -1.24 -4.52
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--3.78 -1.87 -3.75 -1.93 -3.91 -1.71 -0.48 0.13 -6.08 1.65 -2.11 0.24 -3.55 0.5 -5.05 0
--2.89 -0.43 -1.75 -0.07 -4.47 -0.72 -4.17 -1.08 -4.12 -1.13 -3.3 -2.41 -3.36 -2.34 -5.04 0.33
--1.15 0.3 -5.14 2.23 -2.7 0.48 -2.52 0.39 -5.32 1.15 -4.23 -0.61 -0.56 -0.02 -4.84 4.04
--1.55 5.23 -3.43 1.32 -0.84 -2.91 3.52 -4.5 -1.52 -2.86 -4.69 0.43 -0.41 0.13 -5.1 2.08
--4.55 0.43 -4.08 4.32 -1.54 5.1 -4.91 4.04 -0.15 0.04 -4.77 3.97 -1.41 0.61 -3.56 -0.78
--3.91 0.06 -4.34 1.11 -1.32 0.45 -3.37 1.8 -3.19 -1.45 -2.11 2.9 -3.11 4.56 -1.47 4.91
--2.2 1.58 -3.45 0.05 -2.52 -2.61 -0.48 -0.83 -2.56 -0.48 0.65 -2.1 -1.56 -3.17 -0.96 -0.17
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--1.5 -0.7 -2.04 -0.87 -3.34 -3.56 -1.2 -1.19 -2.34 -1.63 -1.65 1.34 -2.62 2.61 p f*
-2 239 204 rG
-941.5 1520.4 -0.16 1.56 2.63 -2.61 1.65 -1.34 2.34 1.63 1.2 1.19 3.34 3.56 2.04 0.87
-1.5 0.7 3.57 1.17 3.46 1.52 3.38 1.63 1.61 1.71 1.17 2.17 0.34 3.17 1.35 3.99
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--3.73 -0.61 -3.66 -0.98 -2.5 -2.58 -1 -0.09 0.13 -0.98 -3.67 -2.06 -3.14 2.59 -1.12 1.13 f*
-0 155 255 rG
-941.6 1519.23 -0.11 1.17 1.13 -1.12 3.14 -2.59 3.67 2.06 0.3 -2.34 -3.82 -1.02 -4.23 2.73
--0.09 1.11 f*
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--1.89 0.13 f*
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--1.35 -0.37 -1.32 -0.35 -0.04 0 -1.93 0.82 -1.95 1 f*
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--1.78 -0.29 f*
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--1.45 -0.67 0 -1.23 -1.11 -0.24 -0.78 -0.18 -1.84 4.5 -1.58 4.53 0.3 0.07 f*
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-10.85 3.21 10.78 3.41 10.75 3.6 10.65 3.78 10.59 3.97 10.53 4.14 10.46 4.34 10.38 4.52
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-8.62 7.36 8.46 7.51 8.36 7.66 8.2 7.79 8.08 7.95 7.92 8.07 7.79 8.22 7.64 8.36
-7.5 8.49 7.34 8.61 7.2 8.73 7.03 8.87 6.9 8.99 6.73 9.11 6.58 9.22 6.4 9.33
-6.25 9.44 6.07 9.57 5.9 9.66 5.75 9.77 5.57 9.85 5.38 9.96 5.23 10.05 5.05 10.13
-4.86 10.22 4.69 10.31 4.51 10.39 4.34 10.46 4.14 10.55 3.95 10.61 3.8 10.68 3.58 10.74
-3.41 10.81 3.21 10.87 3.02 10.92 2.84 10.95 2.62 11.03 2.46 11.05 2.25 11.11 2.06 11.13
-1.87 11.18 1.67 11.21 1.47 11.22 1.28 11.26 1.09 11.28 0.89 11.29 0.7 11.31 0.5 11.33
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--13.28 -1.63 -13.26 -1.65 -8.14 -0.65 -4.94 -0.41 -30.8 0 f*
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--1.71 -2.86 -0.91 -1.57 -3.16 -1.87 f*
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-0.5 5.06 0.89 0.11 -0.21 -5.04 -0.63 -3.19 -0.39 -1.93 -1.67 -4.62 -0.37 -0.63 -2.25 -3.95
--3.37 -0.83 f*
-0 155 255 rG
-948.07 1447.59 -0.26 5.21 3.93 4.66 4.82 1.04 0.11 0.05 4.56 2.13 0.43 -0.05 0 -3.47
--4.84 -1.11 -4.82 -0.02 -0.13 0 -2.65 -3.17 1.85 -5.12 1.65 -1.2 1.5 1.39 3.17 2.82
-5.19 -1.43 4.77 2.3 2.3 2.75 -2.89 1.54 -5.1 1.24 0 3.47 4.55 -0.63 4.86 0.35
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--0.26 -0.24 -4.43 -4.08 -4.86 3.54 f*
-255 0 r6
-948.48 1549.54 -0.05 0.29 0.22 0.02 -0.17 -0.31 f*
-0 155 255 rG
-948.8 1547.57 -0.32 1.98 0.17 0.31 1.58 0.15 -1.43 -2.43 f*
-2 239 204 rG
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--0.09 -0.24 -2.58 -4.36 f*
-255 203 0 rG
-949.59 1762.52 -0.57 0.07 2.02 1.04 1.47 -1.54 -1.97 0.3 -0.95 0.13 f*
-2 239 204 rG
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-5.04 -0.21 1.41 0.93 -1.59 0.52 -4.91 -0.78 -4.94 1 -0.13 0.02 0 1.43 4.82 0.02
-4.84 1.11 5.1 -1.24 2.89 -1.54 -2.3 -2.75 -4.77 -2.3 -5.19 1.43 -3.17 -2.82 -1.5 -1.39
--1.65 1.2 f*
-255 G
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--0.83 5.04 -0.82 5.02 -3.84 -0.37 -0.41 -0.02 -2.43 -0.21 f*
-0 155 255 rG
-952.73 1520.03 -2.43 -0.21 2.5 2.58 3.66 0.98 3.73 0.61 3.58 1.31 3.73 0.45 1.43 1.23
-1.8 1.21 1.21 4.38 -0.07 5.13 0.02 0.09 0.02 -0.07 1.37 -4.93 3.56 0.59 3.56 0.65
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-5.27 0.09 4.86 0.04 0.61 0.02 1.5 1.65 1.46 1.43 0.73 0.37 3.59 1.09 3.99 1.84
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--5.05 4.49 -0.3 2.04 1.19 0.59 4.3 0.34 -2.63 5.05 -4.58 6.6 -3.25 5.36 -1.17 2.3
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--0.83 -0.74 f*
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-2.82 3.3 -3.25 0.95 p f*
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--2.19 1.71 f*
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--1.87 0.65 1.74 1.47 f*
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--2.52 -0.04 f*
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--0.96 -1.19 -0.98 -1.17 f*
-255 135 0 rG
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--0.13 -0.26 -2.87 -3.14 -0.62 -2.56 0.89 -2.15 -4.14 -2.61 f*
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--0.8 -0.57 -2.84 0.98 -2.45 2.17 f*
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--1.52 -1.78 f*
-0 155 255 rG
-1012.8 1465.93 -0.61 5.29 0.2 1.13 3.52 4.36 5.29 -3.61 2.15 -4.99 0.74 -1.58 1.67 -3.34
--0.22 -1.24 -4.06 -3.41 -5.14 0.21 -2.14 2.02 -1.39 5.14 f*
-255 135 0 rG
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--5.17 0.67 -1.76 0.11 -6.12 2.09 -3.8 1.35 3.19 -2.28 5.12 -3.62 0.76 -1.11 1.61 -3.38
--1.49 -1.67 -3.09 0.26 -1.91 0.17 -0.11 0 -4.8 0.46 -1.45 -1.56 -1.76 1.08 -5.25 3.21
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-0.58 1.49 0.29 0.76 1.13 0.5 -0.55 1.21 0.2 0.59 0.46 1.54 0.41 1.54 -3.15 0.87
-0.63 1.46 2 1.11 1 1.39 0.63 1.5 0.05 0.06 0.74 1.41 0.02 1.63 -0.13 1.65
--1.3 1.82 -1.61 1.82 -0.74 1.67 0.46 1.52 -0.15 1.58 -0.42 1.61 -0.87 1.63 -0.21 1.58
-1.41 1.52 0.63 1.59 -1 1.63 -0.39 1.63 -1.67 1.59 -2.08 1.54 -0.46 1.58 2.46 0.15
--0.81 1.61 -0.87 1.59 -0.93 1.58 -0.98 1.58 6.17 0.7 -1.07 1.67 -1.13 1.65 -1.2 1.65
--1.25 1.63 -1.3 1.61 -5.88 -1.2 -1.3 1.49 -1.34 1.48 f*
-255 203 0 rG
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-1018.18 1720.79 -1.32 1.13 3.73 -0.35 3.3 -1.19 0.71 -1.96 -1.5 -2.19 -1.41 1.39 -1.73 1.59
--1.78 1.58 f*
-1019.1 1713.11 -1.37 1.39 3.61 0.95 -2.23 -2.34 f*
-0 255 r6
-1020.88 1804.19 0.45 0.37 2.04 -0.67 -2.49 0.3 f*
-1027.3 1598.18 -0.05 -2.46 3.59 -0.95 -0.63 2.88 -2.91 0.52 f*
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-1030.54 1652.54 -1.13 -0.5 0.28 0.76 0.3 0.95 0.55 -1.21 f*
-0 255 r6
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-1032.01 1600.29 -0.39 -1.65 2.54 -0.28 0.57 2.52 -2.71 -0.58 f*
-255 135 0 rG
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-0.2 -0.07 0.15 -0.18 -0.41 -0.09 -2.93 -0.35 -5 0.83 -0.11 0.07 f*
-0 255 r6
-1036.71 1602.45 -0.67 -0.58 0.76 0.5 -0.02 0.07 -0.02 -0.02 -0.05 0.04 f*
-255 G
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-5.08 1.26 -1.76 5.17 4.97 1.3 4.95 1.37 0.24 0.07 4.66 1.34 4.88 1.45 2.04 -5.14
-4.9 1.52 4.88 1.59 2.93 0.97 1.91 0.66 1.48 0.5 2.3 0.8 1.02 0.37 -0.41 0.91
--1.82 4.04 -0.08 0.2 -2.34 5.1 -4.67 -1.67 -2.32 5.1 -4.62 -1.61 -2.3 5.08 -4.57 -1.54
--4.62 -1.5 -4.66 -1.43 -4.69 -1.39 -2.02 5.1 -4.67 -1.33 -1.98 5.08 -4.6 -1.25 -4.64 -1.24
-1.85 -5.1 f*
-0 255 r6
-1039.67 1804.23 1.04 0.65 4.6 -1.84 -5.64 1.2 f*
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-1.91 -0.63 6.6 -0.83 2.06 -0.41 7.4 -0.41 -2.93 2.3 -5.36 -1.2 -3.71 2.78 -5.23 -1.41
--3.69 2.63 -3.82 2.54 -3.93 2.5 -4.01 2.43 -4.12 2.39 -4.21 2.3 -0.04 0.02 f*
-1047.46 1802.67 0.82 -0.85 1.41 -3.75 3.34 1.72 4.1 1.99 -6.27 2.7 -3.41 -1.8 f*
-255 135 0 rG
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-189 0 54 rG
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-1.54 -0.84 -1.45 -1.21 -2.55 -0.96 -2.37 0.37 1.93 1.63 2.91 1.02 0 0.43 -3.54 -1.25 f*
-110 210 9 rG
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-255 35 0 rG
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-0.11 -0.24 -0.15 -0.15 -4.14 -0.78 -2.49 0.32 -6.25 2.02 f*
-0 155 255 rG
-1060.35 1436.87 -1.59 0.93 0.93 0.93 3.59 0.28 -2.93 -2.14 f*
-189 0 54 rG
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-1.74 1.69 4.36 1.7 0 0.5 -5.04 -1.96 f*
-255 35 0 rG
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-189 0 54 rG
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--5.6 -3.67 -2.45 -0.85 -2.52 0.39 1.59 1.7 3.02 0.89 5.96 1.55 0 0.87 -0.43 -0.15
--3.14 -0.89 -6.43 -1.91 f*
-255 35 0 rG
-1075.02 822.66 -1.59 -1.7 2.52 -0.39 2.45 0.85 5.6 3.67 -5.96 -1.55 -3.02 -0.89 f*
-0 155 255 rG
-1074.66 1430.77 -0.42 5.62 2.22 1.82 4.44 2.85 4.63 2.3 2.06 3.08 1.91 0.66 1.48 0.5
-1.74 -5.32 5.59 -2.69 1.55 -0.76 1.54 -5.42 5.43 -0.41 3.64 3.69 -3.58 4.68 -2.28 5.04
--0.05 0.15 -2.25 5.18 -2.21 5.19 -2.3 5.17 -4.64 0.89 -0.52 -2.87 0.98 -5.61 -0.64 -2.8
--0.91 2.02 0.05 0.24 -1.09 5.58 1.02 5.71 5.23 0.35 4.38 2.02 4.32 1.02 0 -3.21
--3.02 -0.32 -1.93 -1.69 2.88 -0.18 2.06 2.19 0 3.21 0.52 0.13 4.64 -1.13 -1.24 -5.36
--4.14 -2.69 -1.08 -0.82 1.28 -5.6 3.32 -4.79 2.73 -1.63 3.86 -1.87 0.07 -6.09 4.75 -4.26
--1.52 -3.43 -5.84 0.15 -0.65 0.22 -5.05 -0.32 -5.55 -0.45 -1.13 -0.16 -4.29 -0.56 -4.85 -2.21
--4.99 -1.95 -5.53 -0.48 -3.28 0.67 -3.34 4.8 f*
-255 0 r6
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--12.35 -3.8 f*
-255 G
-1095.07 1361.61 -5.88 -1.43 1.32 -5.36 1.3 -5.4 5.99 1.43 1.33 -5.4 1.28 -5.43 6.05 1.48
-1.29 -5.43 1.25 -5.42 1.22 -5.45 6.16 1.5 1.2 -5.45 1.2 -5.47 6.2 1.54 1.17 -5.49
-1.13 -5.49 1.08 -5.5 6.3 1.57 1.09 -5.53 6.29 1.61 1.09 -5.54 6.3 1.65 6.27 1.7
--1.15 5.55 -1.19 5.55 -1.24 5.54 -6.16 -1.73 -1.24 5.54 -1.31 5.51 -6.09 -1.7 -1.3 5.49
--1.34 5.47 -6.05 -1.65 -1.35 5.47 -6.05 -1.63 -1.34 5.45 -1.37 5.45 -1.43 5.43 -5.95 -1.59
--1.41 5.42 -1.43 5.41 -5.87 -1.54 -1.46 5.38 -5.86 -1.5 f*
-2 239 204 rG
-1092.71 1442.27 -1.74 5.32 2.3 0.8 2.97 -4.04 1.39 -0.34 5.67 -2.93 -1.26 4.51 -1.8 5.36
--1.8 5.34 -1.93 2.04 -2.25 2.39 -0.02 0 0.85 -5.69 -1.2 -5.36 -0.91 2.02 0.64 2.8
--0.98 5.61 0.52 2.87 4.64 -0.89 2.3 -5.17 2.21 -5.19 2.25 -5.18 0.05 -0.15 0 -8.32
-1.02 -3.19 0.39 -0.02 0.26 0.26 -1.67 2.95 0 8.32 2.28 -5.04 3.58 -4.68 -3.64 -3.69
--5.43 0.41 -1.54 5.42 -1.55 0.76 -5.59 2.69 f*
-255 203 0 rG
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-0 -2.39 0.05 -0.37 0.45 -0.67 -0.24 0.76 -0.26 0.28 0 2.39 1.93 -2.04 1.8 -5.34
-1.8 -5.36 1.26 -4.51 -5.67 2.93 -1.39 0.34 f*
-255 G
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-2.28 -4.62 0.26 -0.56 0.46 0.2 4.29 1.91 4.73 2.14 2.63 -5.18 4.73 2.21 4.67 2.28
--2.76 5.17 -2.82 5.14 -2.87 5.12 -2.93 5.1 -2.97 5.05 -3.02 5.03 -3.06 4.99 -4.19 -2.19
--3.05 4.97 -4.17 -2.12 -4.23 -2.08 -2.95 4.97 4.17 2.06 4.08 2.13 4.05 2.17 4 2.23
--3.3 4.88 -3.34 4.84 -0.59 0.86 -2.8 3.95 -2.41 -1.39 -1.37 -0.78 -1.26 1.82 -2.11 2.97
--3.38 -1.91 -0.35 -0.2 -0.19 0.29 -3.14 4.51 -3.73 -2.04 -3.76 -1.97 -3.82 -1.93 0.74 -1.15
-2.36 -3.69 -3.95 -1.91 2.98 -4.88 f*
-189 0 54 rG
-1095.79 839.87 -0.63 -1.43 2.54 -0.65 2.41 0.91 -0.76 0.21 -2.5 0.67 -1.07 0.29 f*
-110 210 9 rG
-1096.55 1455.58 -0.05 0.37 0.26 -0.28 0.24 -0.76 -0.45 0.67 f*
-2 239 204 rG
-1103.91 1463.21 -2.88 0.18 1.93 1.69 3.02 0.32 -2.06 -2.19 f*
-7 193 59 rG
-1105.62 1434.89 -1.02 3.19 1.67 -2.95 -0.26 -0.26 -0.39 0.02 f*
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-1107.96 1731.38 -3.19 3.17 0.76 0.45 1.39 3.08 0.87 1.22 5.41 0.89 5.2 -1.54 1.72 -3.49
-0.21 -2.91 -1.93 -0.61 0 -3.39 -0.41 -0.59 -1.21 -2.76 3.25 -3.34 0.93 -3.3 -0.28 -2.69
--1.89 -0.41 -1.89 -2.58 -0.2 -0.26 -2.58 3.04 -3.06 3.21 -2.71 3.14 -1.52 3.15 0.09 1.23
-5.55 0.76 3.37 1.37 -6.32 2.23 -1.56 0.91 f*
-110 210 9 rG
-1103.8 1768.04 2.88 0.45 2.91 0.43 3.43 -3.75 2.93 -3.8 0.41 -0.61 -1.11 0.54 -7.79 3.13
--3.66 3.6 f*
-255 0 r6
-1110.54 1505.79 -0.19 0.29 0.54 -0.09 -0.35 -0.2 f*
-1117.64 1503.11 -1.26 1.82 2.63 -1.05 -1.37 -0.78 f*
-255 203 0 rG
-1117.82 1708.98 -0.91 3.04 4.69 -3.32 -0.95 -3.02 -0.05 0 -2.78 3.3 f*
-1121.2 1687.63 -1.28 3.15 1.24 0.8 4.66 -1.73 2.8 -2.23 1.91 1.41 -0.55 3.17 -4.27 2.95
--1.04 0.91 0.3 0.76 2.43 1.95 1.67 2.11 7.16 -3.38 0.55 -0.33 4.19 -3.69 1.46 -3.52
--0.87 -3.05 0.98 -3.43 4.12 -4.18 2.87 -1.43 2.45 -3.25 5.12 -4.82 -5.68 -0.5 -6.36 1.69
--4.84 3.52 -0.39 3.26 -3.25 3.69 -0.41 0.29 -6.73 3.52 -6.43 1.17 -1.8 1.23 f*
-110 210 9 rG
-1123.11 1770.57 0.11 0.02 5.62 0.5 5.66 0.39 5.71 0.28 5.14 -4.34 -5.79 -0.16 -5.75 -0.26
--5.71 -0.34 -3.95 -0.33 -1.05 4.23 f*
-0 155 255 rG
-1127.45 1438.24 -3.93 3.58 0.8 2.91 1.8 -1.82 6.27 -2.91 0.26 -0.56 0.46 0.2 0.04 -1.17
--4.14 -0.57 -1.57 0.35 f*
-110 210 9 rG
-1134.31 1551.96 -0.09 0.13 0.17 -0.02 -0.02 -0.13 -0.07 0.02 f*
-0 255 r6
-1148.5 1619.92 -3.88 3.8 1.37 2.82 3.95 -1.5 4 1.13 1.15 3.02 2.61 2.35 -0.7 3.88
-1.5 0.41 2.17 1.5 2.66 -0.79 0 -10.63 -0.48 -0.57 0.29 -0.39 1.07 -0.3 -0.87 1.25
-0 10.63 1.59 -0.45 4.08 1.11 2.5 2.11 0.91 0.07 2.26 0.07 0 -4.86 0.58 -4.08
-1.2 -3.84 2.23 2.15 -0.55 4.12 -0.71 1.43 -2.75 0.21 0 4.86 3.1 0.13 4.41 -4.73
-1.37 -2.26 4.08 -4.36 0.7 -4.41 0.43 -0.54 5.9 -3.21 5.57 -4.84 5.39 -5.4 0.5 -0.42
--0.59 0.02 -5.64 -0.61 -0.95 0.33 -6.1 2.02 -5.9 2.75 -5.93 2.84 -4.32 1.3 0.02 -4.04
--1.79 -3.02 -0.87 -3.55 2.89 -4.36 1.89 -1.43 0 -10.96 -2.02 -2.14 0.41 -1.19 1.76 -0.33
--0.15 3.66 0 10.96 3.49 -2.67 5.3 -4.19 5.08 -3.69 0.28 -0.28 0.43 -0.21 5.13 -3.3
-0.5 -0.65 -2.06 -3.28 -0.17 -0.05 -6.25 0 -1.34 -0.91 -2.74 -0.82 -5.34 -0.74 -6.77 1.11
--2.13 5.34 -0.79 2.97 -0.78 2.5 -1.87 5.51 -0.35 0.91 -5.49 3.67 -4.1 5.62 5.96 -0.91
-1.73 0.31 3.7 1.82 -0.11 4.06 -2.2 3.71 -5.9 2.86 -6.05 1.13 -0.37 -0.15 -4.08 -1.17
--3.04 -0.22 f*
-7 193 59 rG
-1156.23 1762.93 -5.03 4.54 5.9 -0.09 -5.34 4.62 5.86 -0.04 -5.62 4.69 0.71 0 7.79 -4.75
-7.36 -3.97 1.78 -1.09 4.75 -4.92 0 -0.11 -0.13 0.11 -6.05 0.45 -6.01 0.34 -5.97 0.22 f*
-0 255 r6
-1164.17 1701.17 -7.14 3.02 4.14 2.8 4.01 -4.3 -1.02 -1.52 f*
-2 239 204 rG
-1152.71 1776.65 5.1 -0.02 5.71 -4.84 3.71 -0.17 6.96 -4.38 0.85 -0.79 5.34 -5.12 1.5 -0.15
-1.87 -3.23 0.43 -1.61 -4.89 0.56 -4.9 4.91 0 0.11 -4.75 4.92 -1.78 1.09 -7.36 3.97
--7.79 4.75 f*
-255 0 r6
-1166.55 1073.94 -6.45 -0.78 0.96 5.45 0.87 5.47 0.83 5.49 6.53 0.87 0.78 5.53 0.74 5.54
-0.65 5.55 0.63 5.55 0.54 5.56 0.5 5.57 6.6 1.09 0.45 5.62 6.57 1.16 0.39 5.64
-6.55 1.2 0.35 5.71 6.53 1.26 -0.37 -5.73 -0.41 -5.71 -0.5 -5.71 -0.54 -5.7 -0.61 -5.69
--0.67 -5.68 -6.47 -1.09 -0.71 -5.64 -0.79 -5.62 -0.84 -5.62 -6.45 -0.96 -0.89 -5.57 -0.96 -5.56
--1.02 -5.55 -1.06 -5.54 -6.36 -0.8 -6.4 -0.76 1.02 5.47 f*
-7 193 59 rG
-1165.37 1642.01 -2.54 -2.06 2.25 -1.93 1.28 0.37 -0.99 3.62 f*
-255 203 0 rG
-1163.13 1624.96 -0.29 0.39 0.48 0.57 0.88 -1.25 -1.07 0.3 f*
-0 155 255 rG
-1167.23 1771.62 2.25 -0.11 4.71 -4.27 -6.96 4.38 f*
-7 193 59 rG
-1168.38 1749.2 1.73 -0.15 3.54 -3.93 -5.27 4.08 f*
-255 203 0 rG
-1175.24 1630.49 -0.58 4.08 2.75 -0.21 0.71 -1.43 0.55 -4.12 -2.23 -2.15 -1.2 3.84 f*
-1177.21 1587.35 -0.41 1.19 2.02 2.14 0.15 -3.66 -1.76 0.33 f*
-2 239 204 rG
-1182.51 1727.02 -0.02 -0.5 0.7 -0.45 6.27 -1.09 0.17 0.24 -1.41 1.52 -5.7 0.28 f*
-0 155 255 rG
-1181.88 1761.18 1.87 -3.23 0.43 -1.61 1.3 -0.16 6.18 -0.87 6.25 -0.98 6.29 -1.13 6.33 -1.25
-5.06 -5.78 6.4 -1.56 4.8 -5.92 0.07 -0.02 6.42 -1.82 3.28 -4.36 1.11 3.02 -8.81 7.29
--0.84 0.63 -8.81 6.58 -3.84 2.28 -7.55 2.67 -6.25 1.13 -6.64 3.38 -4.08 2.2 1.87 -1.87
--6.19 0.84 -4.64 0.55 f*
-0 255 r6
-1189.3 1655.82 -5.47 4.95 2.91 2.69 1.43 0 0.65 -0.79 4.36 -5.55 2.32 -3.54 1.09 -1.8
-5.55 -6.25 0.17 -0.3 -0.15 -0.04 -0.78 0.48 -5.62 5.25 -2.66 2.34 -3.8 2.56 f*
-255 0 r6
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--4.08 2.2 f*
-2 239 204 rG
-1189.43 1599.66 -2.11 -0.48 1.47 -1.28 5.6 -3.43 0.11 -0.04 6.46 -0.76 1 0.29 -0.46 1.24
--5.08 5.14 -1.34 0.21 0 -2 0.72 -0.11 0.8 -0.91 -1.07 0.11 -0.46 0.91 0 2
--4.03 0.61 -1.63 -1.49 f*
-7 193 59 rG
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-1.25 4.88 -0.84 2.95 -3.28 6.1 -0.5 1.43 2.39 3.45 1.61 -0.35 3.11 -2.17 0 -1.91
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--6.16 0.8 -0.65 0.09 -6.79 1.28 -2.65 6.54 0.33 4.06 0.82 6.59 0.98 1.72 1.58 2.64
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--3.71 -2.99 P
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--4.06 1.5 -2.88 0.67 -4.17 0.67 -5.28 -0.65 -0.3 0 -5.06 -1.34 -4.45 1.23 -4.08 4.71
--3.82 2.78 -1.93 0.52 -4.58 4.3 0.61 2.97 2 5.02 2.25 4.53 0.02 0.02 -2.71 6.08
--4.78 4.12 -3.58 2.78 p f*
-110 210 9 rG
-1192.99 1687.33 -2.32 1.65 1.09 1.52 4.99 -3.34 -3.76 0.17 f*
-0 155 255 rG
-1195.81 1598.44 -0.72 0.11 0.46 -0.91 1.07 -0.11 -0.8 0.91 f*
-255 G
-1209.22 1883.88 -13.39 6.81 23.48 -12.11 11.76 -6.05 7.81 -4.04 -2.87 1.72 -13.41 6.83 -13.39 6.84 f*
-2 239 204 rG
-1198.27 1458.77 -2.34 1.48 0.26 1.82 3.69 3.5 3.95 3.06 2.06 1.39 0 -2.72 -0.89 -0.43
--3.96 -3.06 -0.09 -0.09 0.13 0.02 4.21 2.71 0.61 0.84 0 2.72 2.06 1.39 4.62 1.04
--1.67 -5.43 -3.41 -3.95 -4.32 -2.61 -4.9 -1.7 f*
-110 210 9 rG
-1200 1511.3 -3.21 5.05 2.87 3.47 5.25 -3.58 5.16 -3.78 -0.3 -4.19 0.17 -4.88 3.73 -5.16
-4.02 0.45 5.23 -0.24 1.19 -0.24 6.27 -1.22 0.78 0.02 4.95 1.41 3.54 3.19 2.82 3.99
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--4.91 1.02 -2.02 0.09 -4.32 -2.17 -3.23 1.65 -3.58 5.27 -4.45 -0.3 -2.71 -4.05 -0.63 -2.67
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--5.04 -0.63 -0.73 0.13 -5.67 2.39 -4.49 4.52 -0.06 6.59 0.97 3.87 0.76 1.64 1.26 5.97
-2.8 4.01 0.75 5.58 -0.25 0.98 0.47 6.4 2.56 4.02 0.85 5.68 -5.08 4.09 0 6.53
-0.41 0.52 3.21 -0.62 3.32 0.52 4.82 1.28 0.3 0 4.38 2.02 2.47 3.86 1.78 4.49
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--0.33 -0.34 -1.89 -4.67 -0.09 -1.73 3.6 -8.21 4.28 1.65 2.69 -1.15 1.54 -3.54 -0.59 -6.51
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--3.78 -1.97 -0.35 -3.04 2 0.74 2.13 4.27 0 2.2 2.78 1.37 -1.57 -3.95 -2.69 -4.79
--4.04 -1.43 -2.41 1.87 -4.54 -2.26 -2.19 -0.25 -3.93 0.24 -4.55 -2.24 -2.2 0.02 -5.29 1.89
--1.59 0.21 P
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--3.17 -0.02 -5.27 -1.02 -1.78 0.49 -4.23 4.61 -5.01 3.91 -4.23 4.6 1.2 4.99 2.49 4.3
-1.32 3.62 -3.84 5.05 p f*
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--2.71 -0.54 0.84 2.47 -1.8 6.27 f*
-255 0 r6
-1201.54 1554.08 -1.8 -3.95 0.07 -0.13 0.3 -0.21 4.45 1.56 -0.71 4.6 -2.3 -1.87 f*
-0 255 r6
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-2.02 -0.09 4.91 -1.02 2.54 -0.5 3.93 0.02 4.45 2.08 3.47 3.27 2.82 4 3.45 3.15
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--5.99 -0.06 -4.29 -0.63 -3.06 2.48 -1.65 1.69 -4.73 4.17 f*
-7 193 59 rG
-1201.06 1463.74 -0.13 -0.02 0.09 0.09 3.96 3.06 0.89 0.43 -0.61 -0.84 -4.21 -2.71 f*
-0 155 255 rG
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-3.91 2.75 2.52 -0.43 3.49 0.5 5.23 1.11 3.93 2.71 3.43 3.37 2.82 4.04 2.61 2.24
--1.06 -4.11 -4.06 -2.56 -0.91 -6.53 0.59 -2.61 0.8 -7.23 -6.55 1.43 -0.58 -0.02 -6.45 0.48
--1.61 0.07 -5.43 1.26 -4.36 -2.23 -0.84 -0.13 -3.78 5.01 -5.51 3.47 -3.28 1.43 f*
-7 193 59 rG
-1213.71 1620.57 -2.54 3.41 0.39 4.13 2.73 -0.09 0.65 -1.75 0.05 -4.41 -1.28 -1.29 f*
-1212.02 1544.45 -0.59 -0.24 0.11 0.67 1.17 4.69 1.68 4.17 3.69 2.32 1.02 0.13 0.32 -1.3
--1.02 -4.77 -3.01 -3 -3.37 -2.66 f*
-255 0 r6
-1216.19 1564.28 -1.52 0.2 0.54 -2.04 1 0.74 -0.02 1.11 f*
-0 155 255 rG
-1211.89 1720.14 2.91 -0.79 3.02 -4.84 -5.92 5.63 f*
-2 239 204 rG
-1226.82 1738.67 -0.02 0.02 0.07 -0.02 -0.05 0 f*
-255 0 r6
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-1238.52 1702.95 1.99 -0.74 6.45 -2.45 6.45 -2.61 -3.06 5.88 6.47 -2.63 3.05 -6.01 6.45 -2.88
-6.45 -3.04 2.76 -6.2 2.52 -6.14 -6.4 3.25 -6.39 3.11 -6.42 2.97 -6.4 2.82 2.41 -5.69
--6.4 2.8 -4.25 1.78 1.11 4.11 -2.52 5.54 -4.25 6.14 f*
-1242.93 1866.38 -0.29 0.16 0.17 -0.09 0.11 -0.07 f*
-255 G
-1246.25 1864.52 -3.32 1.87 6.33 -4.1 10.77 -6.45 12.02 -7.18 12.07 -8.79 2.28 -1.65 6.42 -4.16
-11.87 -7.68 -1.57 1.15 -9.2 6.58 -9.31 6.4 -9.44 6.25 -9.53 6.1 -9.66 5.92 -9.74 5.75 f*
-1260.03 1855.84 -10.77 6.45 6.05 -3.93 12.5 -8.09 12.5 -8.12 6.08 -3.93 -2.28 1.65 -12.07 8.79
--12.02 7.18 f*
-255 203 0 rG
-1250.82 1530.84 -1.43 0.63 0.2 0.65 0.34 0.24 0.89 -1.52 f*
-7 193 59 rG
-1250.61 1561.71 -0.63 6.13 1.09 4.66 1.15 4.58 3.54 0.57 0 -1.65 -1.87 -0.29 -1.21 -4.54
--0.89 -4.88 0.16 -1.33 0.84 0.5 2.82 3.25 3.06 3.06 -2.91 4.21 0 1.65 0.52 0.09
-4.93 -5.58 0.91 -3.26 -2.3 -0.97 -1.89 -1.17 -3.34 -2.84 -3.97 -2.2 f*
-110 210 9 rG
-1251.93 1564.97 -0.16 1.33 0.89 4.88 1.21 4.54 1.87 0.29 2.91 -4.21 -3.06 -3.06 -2.82 -3.25
--0.84 -0.5 f*
-0 255 r6
-1256.82 1531.23 -0.92 7.34 5.1 1.3 0.74 0.2 5.19 0.28 2.45 3.95 2.37 3.99 1.86 4.43
-1.91 4.32 1.28 1.82 0.3 -3.28 -0.8 -5.43 -1.17 -5.16 -1.28 -5.12 -2.89 -3.58 -1.5 -5.06
--4.02 -2.45 -2.43 0.32 -6.21 2.13 f*
-0 155 255 rG
-1262.07 1496.81 -3.39 -3.54 0.37 -2.69 1.87 -0.18 6.01 -0.46 0.74 -0.3 4.88 -2.95 4.86 -1.78
-1.95 -0.02 2.78 1.96 3.95 2.93 3.56 3.41 3.08 4 2.84 4.21 0.96 6.46 -0.57 1.15
--2.3 2.3 -1.28 0.35 0 -6.34 1.22 -0.26 -0.11 -1.06 -3.02 -3.97 -2.56 -4.62 -2.82 -3.04
--1.26 8.18 6.27 -0.07 2.28 4.84 0 6.34 -1.98 0.54 -3.84 0.11 -4.08 -0.78 -1.02 -0.59
--4.07 -2.56 -3.47 -3.3 -3.78 -2.95 -3.09 -1.67 -1.17 -0.72 -3.82 -2.93 f*
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--3.67 -2.62 f*
-0 255 r6
-1281.25 1536.09 -0.37 3.16 1.88 4.61 2.61 3.82 0.89 5.44 1.07 5.21 3.12 3.26 0.38 -0.09
-5.32 -4.1 5.79 -0.43 0.46 -0.3 0.41 -0.52 -0.63 -5.8 -0.74 -0.71 -1.72 -1.7 -3.88 2.26
-2.67 -5.75 -0.23 -3.21 -1.19 -0.63 -5.99 1.37 -0.57 -0.67 -2.37 -2.91 -2.99 -3.54 -3.91 1.24 f*
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-255 0 r6
-1290.11 1500.48 -6.27 0.07 1.26 -8.18 2.82 3.04 2.56 4.63 3.02 3.97 0.11 1.06 -1.22 0.26
--2.28 -4.84 f*
-1296.2 1831.08 -9.8 7.14 6.42 -4.16 11.87 -7.68 1.37 -1.02 10.29 -8.46 4.88 -4.02 -0.87 0.63
--12.09 8.79 -12.07 8.79 f*
-0 255 r6
-1294.96 1520.5 -1.69 5.63 1.84 4.93 4.84 -0.09 1.48 0.11 3.19 -0.93 0 -2.58 -0.5 -0.02
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-1.91 1.11 1.02 5.46 -6.38 1.2 -0.7 0.2 0 2.58 1.67 -0.48 3.26 -0.55 3.95 1.52
--0.04 -5.93 -2.13 -4.77 -3.3 -1.87 -1.34 -0.02 -3.86 -2.8 -3.06 -3.78 -1.72 1.17 -1.15 2.22
--1.93 5.64 f*
-255 203 0 rG
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--2.52 -4.28 1.37 -4.43 1.63 0.98 2.71 4.12 5.34 0.16 0.54 0.3 0.28 1.54 -2.02 0.43
--4.17 1.26 0 2.84 0.5 0.02 0.7 -0.2 6.38 -1.2 -1.02 -5.46 -1.91 -1.11 -3.34 -0.06
--3.3 -3.47 -3.26 -1.89 -2.69 8.7 f*
-255 135 0 rG
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-0.29 0.56 0 6.36 3.1 0.09 4.17 -1.26 2.02 -0.43 -0.28 -1.54 -0.54 -0.3 -5.34 -0.16
--2.71 -4.12 -1.63 -0.98 f*
-255 35 0 rG
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-255 0 r6
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--3.97 3.64 -8.47 7.51 -8.59 7.36 -8.72 7.2 -8.86 7.06 -8.98 6.88 f*
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--1.78 6.41 f*
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--11.68 -10.54 f*
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-1360.72 1780.29 -0.91 0.83 0.54 -0.44 0.37 -0.39 f*
-255 G
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--11.33 11.72 -11.33 11.74 f*
-255 0 r6
-1385.16 1568.04 -0.29 6.94 5.43 -6.29 5.34 -6.47 5.25 -6.61 5.16 -6.8 5.08 -6.96 0.05 7.14
--0.18 7.3 5.23 -7.14 5.12 -7.32 5.04 -7.48 4.9 -7.68 0.09 7.4 4.95 -7.88 4.84 -8.09
-4.71 -8.27 -0.5 -7.27 4.45 -8.42 -0.85 -7.03 -4.32 8.33 -4.43 8.18 -2.09 3.63 -2.47 4.36
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--0.39 -6.86 -4.95 6.79 -5.04 6.64 0.18 6.83 -5.23 6.49 -5.32 6.32 f*
-1401.26 901.87 -12.03 -13.05 4.71 7.51 4.1 7.07 3.61 6.68 3.1 6.32 2.67 5.95 2.23 5.6
-1.87 5.27 1.52 4.97 9.42 12.24 9.18 12.65 8.9 13.02 0.39 4.14 0.11 3.87 -8.38 -12.66
-0.11 3.8 8.14 12.43 7.86 12.74 -0.61 3.11 7.33 12.78 7.04 13.04 -1.22 2.39 6.49 13
--1.54 1.91 -1.71 1.74 -1.84 1.56 -1.97 1.39 -2.11 1.26 -5.67 -11.76 -2.08 1.34 -2.21 1.2
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--2.52 1.04 -2.62 0.96 5.29 9.72 -2.82 0.71 4.96 9.66 4.76 9.75 4.53 9.83 4.32 9.92
-4.08 9.96 3.86 10.02 -3.45 -0.35 3.56 9.89 3.36 9.94 3.13 9.98 2.88 10.01 2.7 10.02
-2.45 10.03 2.23 10.05 3.78 1.63 2.04 10.22 3.75 1.8 3.67 1.8 1.84 10.61 3.63 2.04
-3.57 2.02 3.5 2.04 1.63 11.26 3.45 2.28 1.37 11.46 1.11 11.41 0.85 11.37 3.34 3.04
-0.55 11.57 0.3 11.48 3.19 3.58 3.1 3.67 -0.06 11.91 2.97 4 0.13 -12.16 2.95 3.82
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-1.28 -13.7 0.93 -13.87 0.61 -14.02 0.22 -14.15 2.5 4.13 -0.07 -14.67 2.47 3.84 2.41 3.95
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-1.54 6.3 -2.26 16.02 -2.69 15.73 -3.11 15.41 -3.47 15.08 -0.63 -7.88 -0.86 -7.57 -3.35 14.08
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--3.95 10.5 0.61 7.62 0.37 7.86 4.3 -10.76 4.1 -11 0.5 7.82 0.26 8.09 0 8.38
--4.73 11.48 -0.52 8.83 4.95 -11.63 -0.59 8.98 -0.91 9.33 5.25 -12.33 -1 9.51 -1.34 9.87
--1.75 10.29 5.92 -13.29 5.66 -13.71 -1.5 10.29 -1.95 10.77 -2.41 11.26 -2.93 11.79 -3.52 12.37
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--2 7.21 f*
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--3.36 8.03 2.11 5.93 f*
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--3.97 -3.8 f*
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-1476.2 1453.56 -3.82 9.68 0.93 7.21 3.97 -9.81 -1.08 -7.07 f*
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--3.28 -4.26 -0.89 10.18 -3.3 -4.34 f*
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-Q q
-0 72 3400 0 0 4128 ^ Y
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-5.64 0.46 5.62 0.54 5.64 0.55 5.62 0.63 5.6 0.65 5.62 0.74 5.6 0.74 5.6 0.82
-5.57 0.84 11.16 1.87 5.58 1.04 5.55 1.02 5.54 1.13 5.55 1.13 5.51 1.23 5.51 1.21
-5.51 1.32 5.49 1.33 5.49 1.41 5.47 1.43 5.45 1.5 5.45 1.52 10.85 3.21 5.39 1.71
-5.38 1.7 5.38 1.8 5.36 1.8 5.32 1.89 5.34 1.89 5.3 1.97 5.29 2 5.27 2.06
-5.25 2.09 5.23 2.16 5.21 2.17 10.37 4.52 5.17 2.34 5.14 2.34 5.1 2.45 5.1 2.43
-5.05 2.52 5.06 2.54 5.01 2.61 5.04 2.63 4.97 2.69 4.97 2.71 4.9 2.78 4.93 2.8
-4.88 2.87 4.86 2.89 4.84 2.95 4.82 2.95 4.75 3.04 4.77 3.04 4.71 3.14 4.73 3.13
-4.67 3.19 4.64 3.21 4.6 3.3 4.6 3.28 4.56 3.36 4.53 3.39 4.5 3.43 4.49 3.45
-4.43 3.54 4.43 3.52 8.72 7.21 4.3 3.69 4.29 3.67 8.47 7.51 4.19 3.82 4.17 3.82
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-3.82 4.18 3.75 4.23 3.75 4.26 7.34 8.59 3.61 4.38 3.6 4.36 7.04 8.86 6.88 8.98
-6.73 9.11 6.58 9.23 6.4 9.33 6.25 9.45 6.08 9.54 5.9 9.66 5.73 9.76 5.58 9.86
-5.4 9.94 5.21 10.05 5.06 10.13 4.86 10.22 4.69 10.3 4.51 10.39 4.34 10.46 4.14 10.52
-3.95 10.62 P
-3.78 10.68 3.61 10.74 3.39 10.8 3.21 10.86 3.04 10.91 2.82 10.96 2.64 11.02 2.43 11.05
-2.25 11.09 2.06 11.14 1.87 11.17 1.67 11.2 1.47 11.24 1.28 11.25 1.09 11.26 0.89 11.31
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-0.35 2.56 0.32 2.54 0.61 4.99 0.28 2.45 0.48 3.97 0.43 3.95 0.42 3.88 0.39 3.87
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--4.51 10.39 -4.69 10.3 -4.86 10.22 -5.06 10.13 -5.21 10.05 -0.76 1.36 0 -20.86 1.09 -1.82
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-0.58 -2.45 p
--0.48 -1.46 -0.5 -1.43 -0.96 -1.7 -0.97 3.95 -0.85 6.77 -1.06 6.36 -1.52 4.41 -1.09 -2.15
--1.95 6.04 -0.29 5.58 -0.98 5.68 -1.58 5.84 -0.8 4.82 -0.37 4.86 -0.39 1.26 0 -88.39
--1.04 -4.69 -1.76 1.28 1.41 1.7 1.39 1.71 0 88.39 -1.11 3.62 -1.37 5.25 -0.91 3.56
-1.15 3.23 -1.54 6.82 1.34 0.91 1.2 2.02 1.02 1.73 0.61 0.21 0.61 0.24 0.26 3
-0.78 3.04 -0.13 2.56 -0.15 2.54 -0.41 2.52 -0.43 2.52 -0.69 3.82 0 198.66 -2.89 4.55
--6.25 9.44 -6.4 9.33 -6.58 9.22 -6.73 9.12 -6.87 8.98 -7.04 8.86 -3.6 4.36 -3.61 4.38
--7.34 8.59 -3.75 4.26 -3.75 4.23 -3.82 4.19 -3.82 4.16 -3.89 4.1 -3.88 4.13 -7.95 8.07
--3.71 3.64 2.24 -2.21 2.21 -2.22 2.2 -2.21 2.15 -2.19 2.1 -2.19 2.11 -2.17 2.06 -2.17
-2.05 -2.14 1.99 -2.13 1.97 -2.12 1.96 -2.13 1.91 -2.11 1.89 -2.11 1.87 -2.08 1.84 -2.09
-1.82 -2.06 1.78 -2.04 1.76 -2.04 1.74 -2.02 1.71 -2.02 0.95 -1.13 0.93 -1.11 0.91 -1.11
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-0.8 -0.98 1.57 -1.95 0.76 -0.95 1.48 -1.87 0.72 -0.93 1.43 -1.82 0.7 -0.89 -1.04 1.32
-0 -174.91 2.24 -0.06 2.62 -2.26 1.5 -2.45 1.47 -2.49 3 -3.56 1.07 -1.84 1.04 -1.84
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-0.76 -2.17 0.74 -2.2 1.13 -3.21 0.84 -0.74 0.84 -0.76 1.7 -2.08 1.11 -3.21 1.07 -3.23
--0.89 0.57 -0.89 0.58 -0.11 -0.95 -0.11 -0.93 -1.41 -0.11 -1.37 0.37 -2.69 5.14 -1.39 4.3
--1.32 0.76 -1.07 -0.91 1.35 -4.68 0.17 -2.63 -2 3.12 0.13 -2.49 1.71 -4.99 1.72 -4.57
--1.59 2.52 -2.54 5.42 -0.95 3.52 -0.46 4.21 -1.2 3.6 0 -44.05 1.35 -0.87 2.02 -0.34
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-0 -40.26 1.23 -1.33 0.7 -3.86 1.87 0.28 1.3 2.59 1.49 0.78 0.55 -5.04 2.13 4.51
-1.43 -1.13 -0.95 -5.96 -1.3 2.32 -1.3 0.26 0.41 -4.14 -1.28 -0.57 -1.35 0.33 -1.58 -0.02
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-0.71 4.06 0.29 5.27 2.04 0.3 1.11 2.84 1.15 0.24 1.83 -0.69 1.63 0.84 1.21 -3.1
-1.33 0.56 1.52 1.59 1.58 0.86 1.26 1.35 0.39 5.86 1.75 -0.74 1.91 0.34 1.52 0.89
-0 40.26 -0.41 0.52 -1.11 -2.78 -2.15 1 -0.61 -3.95 -1.32 -1.86 -1.05 -3.45 -1.61 6.68
--0.56 -2.8 -1.22 -2.58 -1.78 -1.43 -1.33 5.1 -1.58 4.63 -1.04 4.51 -1.93 3.21 -0.22 0.11
-0 -22.44 p
-0.13 -5.36 -1.34 -0.61 -0.76 5.45 1.97 0.52 0 22.44 -1.84 0.93 -1.11 4.41 -1.45 2.02
--1.56 4.73 -1.02 5.64 0 5.27 1.91 -0.15 1.65 1.63 1.45 1.24 -1.19 6.88 -1.24 5.75
-0.89 2.89 1.07 3.16 0.08 5.04 -0.78 4.73 -0.18 4.73 -0.96 7.34 0.09 4.44 1.24 3.11
--1.45 3.54 -0.82 7.03 -1.29 4.38 -0.45 5.23 -1.15 5.17 0 44.05 -0.19 0.59 -0.61 3.79
-0.99 0.43 2.09 -3.05 -1.5 4.77 -0.21 3.11 -2.46 5.16 0.96 0.54 -1.2 4.04 -3.47 5.12
-0 174.91 -1.58 2.02 -2.63 3.3 -2.62 3.25 -2.65 3.23 -2.62 3.19 -2.61 3.11 0 -172.03
-2.28 -1.76 2.21 -3.23 3.2 -3.66 0 -3.97 2.16 -3.3 2.24 -1.93 0.34 -3.59 -3.02 4.71
--0.45 -1.28 -1.37 2.08 0 -2.52 2.58 -4.01 2.09 -3.32 0.58 2.15 2.11 -3.38 0.3 -3.63
--1.8 1.37 1.61 -4.23 -0.98 -0.46 2.54 -3.24 1.04 -3.95 -1.78 0.91 -2.17 2.06 -1.02 4.34
--2.09 3.4 -0.95 -0.56 0.11 -3.87 -2.02 3.8 -2.47 4.43 -0.72 0.76 0 -16.17 3.69 -5.04
-1.5 -6.01 0.41 -3.06 1.99 -5.36 1.05 -4.88 1.13 -3.97 0.56 -6.1 -1.8 5.36 -0.93 4.82
--1.28 5.99 -1.15 4.36 -1.91 6.21 -3.25 7.68 0 16.17 -1.43 1.56 0.63 2.61 1.3 -1.5
-0.17 3.34 2.95 -5.12 0.59 1.66 2.06 -3.77 -1.17 4.36 -2.06 4.27 0 2.52 -1.73 2.63
-0.5 1.67 -2.26 4.32 -1.32 -0.97 -2.7 2.91 0.42 1.82 -0.5 3.56 0 172.03 -0.02 0.04
--2.65 3.11 -2.64 3.06 -2.63 3.04 -2.64 2.99 -2.63 2.95 -2.65 2.91 -2.62 2.89 -5.26 5.64
--2.62 2.75 -2.63 2.73 -2.61 2.69 -1.58 1.63 0 -182.53 3.37 -4.73 2.86 -3.36 1.87 -0.46
-2.84 -4.41 2.32 -4.71 2.3 -5.29 2.69 -4.45 3.65 -3.47 2.69 -2.78 0.93 1.17 -1.3 3.71
-0 1.93 0.93 1.08 1.32 1.54 0.46 -2.56 1.84 -1.58 2.21 -0.67 0.5 -2.64 -0.93 -1.07
--3.14 2.43 -1.37 -0.98 1.78 -1.96 2.21 -3.17 -1.64 0.84 0 -6.9 1.82 -0.67 2.56 -3.82
-1.49 -4.8 -1.78 1.17 -2.61 2.87 -2.3 1.37 0.17 2.25 0.63 1.63 0 6.9 -1.54 0.76
--1.41 -0.48 1.65 -5.32 -1.08 -1.91 -2.2 3.11 -1.63 4.23 -1.41 0.02 1.72 -2.91 -1.91 -0.32
--2.64 3.19 -2.24 2.56 -3.12 3.6 1.04 1.52 -2.71 3.49 -3.21 4.99 -2.26 1.87 -2.32 3.76
--2.82 4.25 -0.48 2.75 1.34 0.68 0.39 1.8 -1.54 3.93 0 182.53 -1.52 1.54 -6.3 6.29
--3.19 3.11 -1.61 1.54 0 -243.33 1.63 -2.15 1.32 -3.76 2.25 -4.1 1.18 -3.71 0.57 -4
--0.57 -1.93 -1.85 -0.61 -2.08 2.43 -1.93 2.69 -0.67 3.5 -1.02 4.51 0.08 2.45 0.57 2.32
-0.52 2.34 0 243.33 -1.61 1.57 -3.23 3.06 -3.25 3.06 -3.3 3.04 -3.3 3.02 -3.32 3.02
--3.36 2.97 -3.36 2.95 -2 1.71 0 -182.23 3.08 -2.73 3.25 -4.1 3.67 -4.21 3.12 -3.8
-2.68 -4.21 3.54 -4.36 -2.43 1.63 -0.85 -0.87 -3.45 2.63 -2.98 2.88 -3.17 4.58 -2.62 3.63
--2.78 4.05 -1.87 3.99 0.8 0.89 0 182.23 -1.41 1.22 -3.4 2.91 -3.45 2.89 -3.45 2.86
--3.47 2.82 -2.93 2.37 -2.97 2.37 -3 2.36 -3.06 2.37 -3.08 2.39 -3.15 2.37 -3.17 2.38
--3.21 2.37 p
--3.28 2.39 -3.3 2.39 -3.34 2.36 -3.41 2.39 -3.43 2.39 -3.5 2.36 -3.53 2.39 -3.56 2.37
--3.62 2.37 -3.69 2.37 -3.71 2.34 -1.67 1.07 -3.43 2.13 -1.76 1.09 -1.78 1.08 -1.8 1.09
--1.82 1.11 -1.87 1.11 -1.89 1.13 -1.91 1.13 -1.93 1.13 -1.97 1.13 -1.99 1.15 -2.05 1.17
--2.06 1.15 -2.09 1.17 -2.13 1.19 -2.14 1.18 -2.19 1.19 -2.23 1.2 -2.25 1.22 -2.3 1.21
-1.64 -0.85 1.63 -0.86 1.68 -0.89 1.67 -0.91 1.69 -0.92 1.71 -0.93 1.72 -0.96 1.73 -0.96
-1.76 -0.98 1.78 -1 1.78 -1.02 1.83 -1.02 1.82 -1.04 1.84 -1.09 1.87 -1.08 1.5 -0.87
--4.88 2.88 -4.93 2.78 -4.9 2.78 -4.97 2.72 -4.97 2.69 -5.04 2.63 -5.01 2.6 -5.06 2.54
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-1.82 -1.91 2.37 -1.04 3.02 -0.33 4.25 -1.2 2.78 -1.58 4.32 -1.34 2.12 0.11 3.15 -2.06
-2.64 -1.06 4.16 -3.38 -4.32 1.52 2.76 -1.72 2.06 -2.49 5.64 -2.64 -2.82 0.24 5.79 -4.06
-3.17 -4.21 -1.06 -1.54 3.19 -2.06 1.46 0.46 4.95 -4.02 4.95 -3.52 0.57 -1.5 -1.84 -0.13
-0 -2.34 2.06 -0.5 2.84 -2.46 3.11 -2.25 -0.69 -0.98 2.71 -3.1 2.24 -1.65 2.78 -1.87
-0.26 -2.06 -2.98 0.7 -2.95 2.93 -2.75 1.8 -0.93 2.32 -3.06 2.24 -2.12 2.78 -0.5 2.11
-0 2.34 -0.22 -0.02 -2.84 1.11 -4.04 2.78 1.96 -2.93 0.82 -1.91 3.61 -3.61 1.85 -2.34
-2.95 -3.43 2.28 -3.21 3.21 -2.69 0.85 -2.28 2.11 -3.2 1.3 0 -1.34 2.56 2.64 -0.87
-2.22 -0.09 3.53 -2.67 4.13 -3.02 3.69 -2.23 3.84 -4.34 0.29 -2.47 -2.89 1.56 -2.82 1.48
--2.54 2.61 -2.89 1.45 -1.65 -0.15 2.47 -1.54 1.02 -2.17 -2.82 0.46 -2.93 3.39 -3.32 3.21
--1.93 2.84 -2.82 1.28 -2.52 3.04 -2.87 2.8 -3.71 3.45 -4.12 3.23 -1.5 2.47 -2.88 3.93
--2.8 3.54 -2.47 3.06 0.28 1.47 -2.32 2.04 -2.82 0.93 -3.52 2.34 -4.04 2.52 -3.19 1.22
--3.23 2.47 3.5 -1.61 2.28 -0.67 -3.88 3.28 -3.41 3.15 -3.3 2.36 -3.78 1.86 -3.71 2.72
--4.05 1.52 -4.17 2.06 -3.5 1.3 -3.34 0.59 -2.71 0.46 -2.25 0.34 -4.64 1.89 0.24 1.21
--1.72 1.74 -1.62 0.22 1.37 -1.39 -2.5 0.61 -1.34 2.34 2.54 -0.65 2.37 0.04 1.25 1.04
-2.54 0.29 0 130.03 -1.37 0.63 -5.14 2.34 -10.37 4.52 -5.21 2.16 -5.23 2.17 -5.25 2.09
--5.27 2.06 -5.29 2 -5.3 1.98 -5.34 1.89 -5.32 1.89 -5.36 1.8 -5.38 1.8 -5.38 1.7
--5.39 1.71 -10.85 3.21 -5.45 1.52 -5.45 1.5 -5.49 1.43 -5.47 1.41 -5.49 1.32 -5.51 1.33
--5.51 1.21 -5.51 1.24 -5.55 1.13 -5.54 1.13 -5.55 1.02 -5.58 1.04 -11.16 1.87 -5.57 0.85
--5.6 0.82 -5.6 0.74 -5.62 0.74 -5.6 0.65 -5.62 0.63 -5.64 0.55 -5.62 0.54 -5.64 0.46
--5.64 0.43 -11.29 0.69 -5.64 0.26 -5.64 0.24 -5.66 0.15 -2.04 0.04 0 -0.11 2.54 -0.07
-2.52 -0.09 1.04 -0.02 1.21 -0.05 0.26 -0.02 2.5 -0.09 2.13 -0.09 6.09 -0.28 6.08 -0.34
-6.08 -0.39 6.08 -0.46 6.04 -0.5 6.03 -0.58 6.03 -0.61 6 -0.67 5.99 -0.74 5.95 -0.79
-5.95 -0.84 p
-5.9 -0.89 5.9 -0.95 5.86 -1 5.84 -1.05 5.79 -1.08 6.18 -1.23 6.21 -1.28 6.21 -1.34
-6.23 -1.43 6.23 -1.5 6.25 -1.57 6.25 -1.63 6.25 -1.69 6.25 -1.76 6.25 -1.82 6.27 -1.91
-6.25 -1.97 6.25 -2.04 6.23 -2.11 6.23 -2.17 6.23 -2.23 6.21 -2.3 6.18 -2.39 0.33 -0.12
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-0.26 -0.11 0.29 -0.11 0.52 -0.21 0.28 -0.11 0.24 -0.11 0.26 -0.11 -6.01 2.37 -5.62 2.15
-0 -129.8 3.91 -1.89 4.23 -2.23 2.15 -2.23 4.34 -2.02 3.67 -1.45 2.45 -0.45 1.7 -2.91
-0.76 -2.52 2.61 -2.06 2.8 -1.78 -0.09 -0.89 1.36 -1.39 1.96 -0.5 -0.59 1.59 -0.06 1.49
-3.43 -2.52 3.67 -2.3 -3.8 0.5 -0.65 -0.82 -2.5 0.61 -4.53 2.61 -1.81 -0.16 -1.15 1.63
--2.04 1.98 -1.93 0.43 -1.8 -0.15 -2.93 1.36 -2.47 0.46 -3 0.41 -2.15 -0.82 -3.28 1.58
-0.41 1.47 1.21 1.2 0.18 1.21 -0.43 2.13 -1.56 2.19 -1.74 1.87 -5.04 2.43 4.56 -1.2
--0.09 0.96 1.52 0 -3.28 2.19 0 129.8 -0.41 0.17 -6.07 2.23 -6.1 2.21 -6.14 2.13
--6.16 2.06 -1.89 0.64 0 -129.47 5.67 -1.95 5.16 -2.15 4.76 -1.91 -5.82 1.52 -4.34 1.54
--1.55 1.46 -3.88 1.5 0 129.47 -0.56 0.17 0 -146.57 0.86 -1.95 1.95 -1.58 2.8 -0.93
-2.35 -0.16 3.52 -0.65 3.36 -0.12 1.35 0.65 0.2 1.17 1.69 0.34 -0.35 1.2 3.06 0.11
--0.31 -1.52 1.17 -1.47 2.87 -1.16 4.13 -0.89 -3.13 -0.87 -3.58 0.84 -3.58 -0.06 -3.26 0.5
--2.41 -0.69 -0.87 -0.64 -2.67 0.46 -2.86 0.11 -3.02 -0.21 -2.71 -0.5 -3.3 -0.02 -2.21 -0.48
--0.8 -1.2 -2.97 -0.32 -3.53 0.11 -3.15 -0.67 -3.19 1.17 -2.32 0.45 -1.58 -1.06 -1.89 1.04
-1.04 1 2.61 0.69 2.28 0.93 2.91 0.43 3.23 0.15 2.02 1.13 2.28 0.88 2.28 0.84
-1.98 1.11 1.95 1.09 1.83 0.75 0 146.57 -3.71 1.21 -6.23 1.95 -2.02 0.63 0 -128.67
-6.14 -1.66 2.11 -1 -4.8 1.26 -3.45 1.41 0 128.67 -4.21 1.28 -6.25 1.82 -6.25 1.76
--6.29 1.71 -6.3 1.63 -6.32 1.58 -6.32 1.5 -4.95 1.13 0 -132.27 4.25 -1.19 -1.23 -0.52
--3.2 0.91 -3.55 0.29 1.11 0.49 2.63 0.02 0 132.27 -1.37 0.33 -7.25 1.56 -7.25 1.47
--3.6 0.7 -3.62 0.7 -3.61 0.65 -3.6 0.68 -2.56 0.43 0 -136.98 3.71 -1.37 4.23 -0.28
-3.08 1.06 4.88 0.31 4.73 -0.31 4.75 -0.74 -0.57 -1.06 -1.82 -0.89 -1.75 -1.24 -0.87 -1.97
--2.13 -1.43 -1.74 -1.67 -1.04 -1.24 -1.39 -1.47 -1.43 -1.11 -2.82 -1.2 -3.14 -0.74 -3.13 -0.79
--3.49 0.74 -3.04 -0.52 -0.61 -1.13 -2.76 1.09 -4.04 0.5 -4.62 -0.02 -4.2 -0.2 -3.11 -0.67
--4.77 -0.15 -3.95 -0.41 -2.41 -0.65 -3.71 0.07 -3.71 0.39 -1.93 -0.84 -2.24 -1.71 -1.95 -1.5
--3.15 -0.22 0.79 -0.86 4.77 -0.55 2.41 1.05 1.17 1.32 2.78 -0.41 3.21 0.39 3.58 0.26
-4.3 0.02 -0.18 -1.34 -0.78 -1.11 -3.76 -1.17 3.59 -0.49 1.89 -1.31 3.54 -0.93 4.19 -0.82
-3.67 0.32 3.73 0.32 4.04 -0.24 3.54 0.3 3.29 0.73 -2.11 1.29 -0.26 1.2 4.8 -1.72
-2.11 -1.37 p
-2.25 -0.3 4.14 -1.23 2.43 -1.21 -0.26 -1.02 -3.25 0.5 0.06 -1.17 2.13 -0.71 1.91 -1.39
-1.5 -1.61 2.08 -0.75 1.47 0.36 1.13 0.17 1.84 -1.43 2.91 -1.3 2.14 -2.17 3.17 -0.71
-0.24 -0.98 2.86 -1.87 3.11 -2.11 2.78 -1.62 0.67 -0.39 3.38 -1.11 2.84 -0.28 3.41 -1.2
-3.2 -0.57 2.86 -0.39 3.17 -1.13 3.88 -1.32 3.47 -0.96 4.69 -1.09 4.38 -1.47 3.99 -1.61
-4.38 -1.61 0.83 -0.46 2.8 -1.57 1.34 0.3 -0.79 1.96 -2.64 2.06 2.56 0.18 2.6 0.13
--3.8 1.02 -2.25 1.63 2.6 0.19 3.06 -0.84 -3.84 2.59 -4.86 1.36 -2.08 1.87 -0.7 1.19
-0 -5.62 4.05 -1.15 -0.56 -1.02 -2.82 0.5 -0.67 1.67 0 5.62 -0.43 0.76 1.23 0.41
--0.15 1.57 -0.45 1.8 3.36 -0.41 2.46 0.28 0.63 0.87 2.91 -0.52 3.62 -0.78 3.43 -0.59
-3.35 -0.07 2.79 0.41 3.56 0.16 3.23 -0.5 3.69 -0.48 1.15 -0.48 4.41 -1.8 4.95 -1.8
-1.06 -0.46 3.39 -1.43 4.63 -1.11 3.86 -1.41 4.14 -1.78 4.73 -2.47 5.29 -2.69 4.97 -2.98
-0.54 -0.17 2.73 -0.93 4.97 -2.58 3.79 -3.04 4.11 -2.86 3.1 -3.02 0.5 -2.71 -2.23 0.52
-1.63 -2.38 2.38 -1.43 3.75 -2.08 0.91 -1.41 2.67 -1.29 2.71 -2.79 4.66 -3.13 1.47 -0.15
-3.43 -1.07 2.12 -2.19 3.54 -2.97 2.89 -2.8 2.06 -2.24 1.71 -2.45 1.32 0.13 2.63 -1.63
-0.61 1.59 1.3 1.02 2.3 0.02 1.48 0.63 2.06 0.43 3.04 -0.63 3.21 -1.02 3.43 -1.46
-3.11 -1.72 3.41 -2.47 3.06 -3.64 2.28 -4 2.3 -3.38 3.49 -4.06 -2.89 0.5 -3.41 1.72
--3.69 3.43 -3.43 0.67 -3.37 0.31 -1.71 2.97 -2.5 0.48 -1.25 -1.3 1.99 -3.71 -1.71 -1.36
--3.3 2.39 -3.16 2.02 -3.89 2.54 -0.43 -1.06 0.16 -1.55 -0.04 -2.12 1.54 -2.78 1.95 -2.67
-2 -3.04 2.78 -2.54 2.41 -3 1.08 -2.06 -3.49 3.54 -1.74 -0.43 -1.91 1.52 -2.3 2.58
--3.32 2.67 -2.26 -0.21 0.34 -2.56 2.87 -2.78 3.3 -3.02 1.75 -2.67 2.26 -2.93 2.39 -1.82
-1.93 -1.91 1.21 -2.8 -0.71 -1.22 2.48 -2.56 2.32 -1.59 1.84 0.29 1.28 0.89 1.15 1.28
-2.68 -1.13 1.21 0.91 -0.46 1.89 -1.91 2.02 -2.06 2.37 -1.74 2.82 1.24 0.65 -0.02 1.57
--0.7 2.28 -0.11 1.95 3.71 -2.86 -0.67 -0.91 2.34 -3.15 1.98 -3.67 2.91 -2.23 2.21 -3.21
-2.78 -3.61 2.41 -2.43 2.97 -2.82 1.07 1.69 1.04 1.71 3.08 -1.21 2.5 -0.87 2.56 -0.98
-2.65 -1.34 0.67 0.93 1.76 0.61 2.47 -0.97 0.65 -2.87 2.09 1.04 2.06 -1.02 1.02 -2.49
-1.39 -2.37 1.84 -2.39 1.02 -2.88 0.74 0.89 -1.07 3.28 0.74 0.91 0.09 1.71 1.69 -1.56
-3.82 -3.1 0.26 -1.29 3.36 -3.28 1.52 -0.78 1.73 -2.07 0.28 -1.73 2.34 -2.97 2.76 -3.37
-2.8 -3.43 2.26 -3.43 -0.3 -1.26 2.54 -1.8 2.06 -2.19 2.67 -3.56 2.11 -3.08 1.61 -3.14
-2.56 -3.17 0.11 -2.56 1.96 -1.86 1.52 -3.19 1.93 -3.99 1.46 -3.61 1.89 -4.54 1.32 -4
-0.32 -2.99 0.29 -2.95 -0.22 -2.47 2.15 -4.17 -2.54 0.11 2.63 -3.86 -2.02 -0.02 2.63 -3.45
-0.55 -3.45 0.04 -2.89 0.89 -3.93 -0.11 -3.23 0.39 -3.41 1.5 -2.87 2.37 -1.52 0.58 -2.26
--0.37 -1.52 p
--2.28 1.91 -1.33 1.21 -2.02 3.02 -0.37 -1.52 -1.72 -0.34 -0.57 -2.29 0.24 -3.29 0.69 -3.47
-0.55 -3.8 1 -3.91 1.61 -3.8 0.78 -4.32 1.67 -3.45 1.98 -4.02 3.17 -2.36 2.2 -0.48
-1.61 -1.83 2.54 -1.04 2.36 -1.3 2.67 -0.68 2.11 -0.45 2.38 -1.39 2.48 -1.11 2.78 -3.34
-2.43 -2.8 2.24 -3.25 2.09 -3.64 1.71 -3.08 2.54 -5.23 1.65 -3.12 0.98 -3.23 0.02 -4.1
-0.11 -3.71 0.11 -3.66 0.02 -3.7 -1.24 -2.45 2.11 -4.47 0.67 -4.55 -0.84 -2.76 0.15 -4.21
-0.09 -4.23 -1.76 2.46 -1.66 3.79 -1.29 4.47 -1.75 -0.76 -1.72 1.46 -1.39 -2.34 -2.17 0.85
--2.02 2.02 -1.86 2.39 -1.73 1.39 -1.39 -0.09 -2.49 1.37 -1 -1.63 -1.5 -1.37 -2.04 4.13
--1.84 -0.76 -0.43 -2.82 1.8 -4.43 2.28 -4.78 0.91 -3.6 1.2 -4.25 0.41 -3.38 1.37 -4.82
-1.78 -4.26 1.93 -3.1 1.15 2.45 2.23 -4.67 1.89 -1.24 1.91 -3.14 2.09 -3.8 1.67 -0.67
-1.87 1.46 2.06 -1.93 2.11 -1.06 2.06 -1.02 2.04 -1.06 2.29 -2.67 1.3 -3.99 1.26 -4.02
-1.23 -4.01 1.2 -4.06 1.76 -1.56 2.28 -3.56 1.78 -4.19 -2.2 -2.66 -1.52 0.89 -1.8 0.56
--2.04 0.29 -1.71 1.5 -2.23 0.91 -1.41 3.66 -2.22 1.89 -2.19 2.73 -0.96 4.23 -1.56 1.69
--1.76 4.25 -1.06 3.15 -1.08 2.16 -1.22 1.46 -1.84 1.32 -1.84 1.3 -0.26 0.26 0 -22.48
-2.11 -1.08 1.76 -2.38 1.98 -2.13 2.06 -1.13 2.13 -0.26 2.28 -0.87 2.11 -2.84 2.36 -2.56
-1.37 2.37 2.61 -2.32 1.67 1.09 2.32 -2.63 1.43 0.7 0.76 -4.41 1.28 1.45 2.06 -2.02
-0.57 -3.8 0.02 -4.38 1.61 -1.65 1.8 2 1.67 -5.17 1.47 -1 1.17 -3.02 1.52 1.7
-1.58 -1.82 -0.45 3.95 -1.17 1.32 -1.65 -1.02 0.15 3.8 1.34 2.43 1.65 -3.5 1.22 -3.08
-1.13 0.43 0.59 -4.69 -2.8 0.35 1.28 -2.04 0.02 -5.25 0.96 -5.92 0.65 -4.45 0.43 -5.45
-0.33 -4.73 -1.63 0.93 -1.3 -1.26 -0.29 -2.73 -1.24 0.5 -1.91 3.11 -2.02 1.35 -2.78 2.28
--1.87 2.34 -1 2.28 -2.08 1.26 -2.19 3.64 -2.09 2.91 -0.91 3.11 -2.02 3.84 -0.93 3.11
--2.08 2.09 -1.13 2.13 -1.07 0.06 0 -10.8 2.56 -4.82 -1.02 -1.7 -1.21 1.26 -1.02 3.82
-0.7 1.43 0 10.8 -1.26 0.09 -1.78 4.82 -1.76 3.17 -0.62 2.62 -2.3 1.05 -1.43 0.21
-0 -8.18 2.58 -2.34 0.74 -3.34 -2.14 2 -1.7 1.56 0.52 2.13 0 8.18 -0.7 0.11
--1.52 3.39 -2.21 1.8 -1.98 2.15 -1.28 -0.5 -2.7 2.19 -2.28 1.84 -1.73 2.35 -1.43 3.45
-1.91 1.95 2.08 -1.19 1.89 1.98 2.25 1.62 0 22.48 -2.11 2.29 -2.37 1.64 -0.26 -2.17
--1.67 2.52 -1.41 3.69 -0.98 5.17 -1.78 4.32 -1.54 3.63 -0.34 3.32 -1.33 3.02 -2.3 2.67
--1.23 5.06 -2.39 3.45 -1.06 1.08 0 -541.79 -1.93 -2.63 -1.96 -2.63 -3.1 -3.69 -3.17 -3.69
--1 -1.52 -1.04 -1.54 -0.02 -0.58 -0.02 -0.61 -0.47 -1.74 -1.71 -1.91 -1.74 -1.93 -3.14 -2.82
--3.14 -2.8 -3.15 -2.75 -3.14 -2.71 -0.71 -0.48 -0.72 -0.46 -2.21 -1.71 -2.19 -1.68 -2.95 -2.36
--2.95 -2.32 2.47 2.41 2.43 2.41 -1.41 -0.87 -1.41 -0.84 -1.82 -1.17 -1.82 -1.15 1.67 1.91
-1.63 1.89 p
-2.5 2.52 2.45 2.54 2.45 2.32 2.43 2.32 2.82 2.62 2.82 2.65 2.11 1.97 2.13 1.98
-2.9 2.93 2.89 2.93 3.71 3.67 3.69 3.73 2.93 2.86 2.93 2.93 0 541.79 -1.8 1.82
--2.45 3.39 -2.17 2.86 -2.3 3.62 -2.02 3.11 -2.25 2.75 -2.37 1.56 -1.46 -0.08 0.83 -2.93
--0.39 -3.51 -0.19 -3.23 0.28 -3.43 -1.13 -1.52 -1.17 -0.65 -2.23 -0.11 -1.29 3.93 -1.67 4.49
--2.32 3.54 -2.56 3.19 -2.28 2.67 -0.89 -1.21 -2.21 1.8 -0.5 2.23 -2.25 1.78 -0.85 -1.17
--1.91 1.19 -2.69 1.18 -2.43 1.41 -2.07 2.04 -1.82 2.34 -2.06 1.96 -0.63 0.34 0 -118.21
-2.95 -0.65 2.34 -2.46 2.3 -2.5 1.96 -2.73 2.11 -1.98 1.11 -3.96 0.3 -3.87 -1.04 -3.38
--2.02 -2.67 -1.67 -1.08 -1.71 2.21 -1.87 4.05 -1.11 2.65 -1.08 3.93 -0.5 3.05 -0.65 3.61
-0.11 3.5 -1.52 2.28 0 118.21 -1.87 1.09 0 -3.78 0.09 -2.73 0.41 -3.23 -1.04 -2.22
--1.09 -2.19 -1.04 -2.24 -0.89 -1.91 -2.6 3.08 0.74 -2.6 -0.59 -2.45 -0.87 -2.62 0.74 -2.65
-1.4 -1.78 0.72 -3.45 0.42 -3.65 -0.96 -2.66 -1.04 -1.84 -0.2 -3.47 0.28 -2.87 0.31 -3.69
--0.33 -3.4 -0.82 -2.32 -0.37 -2.65 0.13 -3.6 -0.68 -2.87 -0.36 -1.82 0.95 -2.93 -0.15 -2.37
--1.55 -1.97 -0.93 -1.45 0.57 -3.21 -2.3 -1.13 0.2 -3.37 0.8 -2.97 1.83 -3.49 1.8 -3.62
-1.73 -3.59 1.11 -4.02 0.23 -3.99 0.02 -3.45 1.15 -3.32 1.24 -2.56 1.26 -3.86 -1.93 -1.34
--0.24 -4.21 1 -3.34 -1.48 -1.63 -1.15 -2.73 0.46 -4.38 -1.24 -2.73 -1.97 0.11 -2 1.34
--2.12 1.96 -1.8 3.41 -1.8 3.49 -1.69 2.85 -1.71 2.84 -1.84 2.04 -2.21 1.89 -1.91 2.09
--1.93 3.32 -1.75 2.8 -1.8 2.78 -1.46 2.99 -2.52 2.32 -2.48 2.32 -2.19 2.52 -1.68 2.22
--1.75 3.43 -1.57 2.93 -2.12 3.17 -2.2 3.23 -0.22 2.47 -1.32 1.11 -1.93 2.67 -1.06 3.28
--1.33 3.73 -2.11 1.93 -1.49 2.34 -1.13 3.23 -1.15 -0.17 0.61 -2.96 1.3 -3.73 -0.63 -3.06
--1.41 -2.28 -2.26 -1.48 -2.61 0.28 -2.69 1.54 -2.21 1.15 -2.3 2.41 2.23 1.43 1.43 2.25
--0.83 3.41 -1.69 -2.45 -2.19 -1.43 -2.82 0.76 -2.47 1.69 -2.25 0.5 -2.39 -0.19 -1.48 2.21
--1.8 2.11 -1.99 0.67 -1.89 1.35 -0.3 -0.09 0 -299.68 1.08 -0.82 -0.34 -2.09 -2.08 -0.37
-1.34 3.28 0 299.68 -1.84 -0.55 -1.68 -1.69 -1.34 -1.41 -1.71 -1.61 -1.84 -0.48 -2.07 0.06
-0 -301.45 1 -1.34 -0.58 -1.05 -2.09 -0.37 -0.45 1.89 2.12 0.87 0 301.45 -0.04 0
--0.83 -1.73 -2.28 -1.28 -1.78 -1.56 -2.11 -1.8 -2.89 -0.89 -1.89 -0.43 -2.54 -0.74 -2.04 -1.05
--2.26 -0.49 -2.8 -0.29 -2.61 -0.63 -2.97 -0.87 -1.87 2.58 -1.41 2.26 -2.19 1.26 -2.04 -0.98
--1.65 -1.95 -1.34 -1.74 -1.83 -2.54 -2.36 0.65 -1.89 -1.43 -2.17 1.35 -2.3 -0.46 -2.73 1.67
--2.32 0.7 -3.19 -0.26 -2.02 1.95 -1.88 2.56 -2.89 2.15 -2.78 2.71 -2.17 1.37 -1.37 -1.67
--1.95 0.85 -1.96 0.87 -0.28 -3.41 -2.06 -0.8 1.96 -2 -2.11 -1.86 2.15 -0.29 1.8 -2.58
-2.17 -2.45 1.97 -1.98 2.71 -1.65 2.71 -1.71 2.5 -1.2 1.63 -2.15 0.56 -2.56 2.3 -1.8
-1.26 -1.15 p
-0.58 2.93 -0.56 2.59 0.91 0.89 1.8 -1.45 1.45 -2.76 0.7 -3.06 -0.41 -3.47 1.84 0.74
-1.21 -1.2 2.78 0.59 0.92 2.04 2.16 0.91 2.7 0.54 1.63 1.29 0.17 2.86 1.37 2.93
-0.63 2.54 0.68 2.56 1.11 2.23 -0.11 2.3 1.25 -0.02 0.29 -1.61 1.17 -2.91 1.37 -3.39
-2.71 -1.65 2.54 -1.13 2.69 -0.48 2.28 0.54 2.82 0.15 2.04 -1.95 2.39 -1.74 2.3 -0.63
-0.11 -3.49 0.07 -3.47 -0.84 -2.15 -0.35 -2.52 -0.18 -2.95 -1.82 -0.83 -0.22 -2.99 0.68 -3.14
-1.61 -2.17 -1.54 -1.78 -1.67 -1.34 -0.68 -1.48 0 -41.25 -0.19 -0.22 0 -370.7 -0.37 -2.02
-0.02 -1.55 1.48 0.39 2.37 0.39 -2.12 -1.98 -1.39 0.11 -1.74 -1.43 -0.32 1.08 -2.71 -0.84
-2.75 2.39 0.74 2.54 1.31 0.91 0 370.7 -1.82 -2.14 -1.95 -0.71 -1.87 0.45 1.26 2.11
-2.52 0.3 2.06 0.22 0 41.25 -0.3 -0.65 0.2 -3.32 -0.82 -1.43 -1.67 -1.31 -1.97 -1.86
-0.13 -3.32 -1.48 -2.26 -2.02 -0.26 -2.17 -1.37 -1.89 -2.38 -1.11 -1.02 0 -179.21 1.57 -2.69
-1.15 -2.78 0.24 -3.41 1.04 -3.34 0.45 -4.41 0.22 -2.93 -2.04 -3.37 -1.89 2.15 -0.07 -4.93
--0.67 -2.62 -1.45 -1.72 -0.29 -2.54 -0.87 -3.56 -0.78 -3.08 -1.73 -3.69 -1.28 -3.13 -1.24 -3.12
--1.23 -2.65 -0.79 -2.56 -1.25 -2.56 -1.29 -2.62 -1.21 -2.61 -0.89 -2.5 -0.82 -2.54 -0.87 -2.54
--1.21 -2.07 -1.43 -3.03 -1.28 -2.59 -2.32 -3.15 -1.98 0.28 -2.76 -1.3 -2.43 -1.72 -2.62 -0.76
--0.5 0.3 0 -358.03 -5.55 -2.17 -5.56 -2.12 -5.51 -2.04 -5.5 -1.97 -5.09 -1.87 -5.12 -1.82
--5.17 -1.78 -5.21 -1.76 -3.6 -1.12 -3.58 -1.09 -3.58 -1.06 -3.56 -1.04 -2.88 -0.83 -2.89 -0.78
--2.86 -0.78 -2.84 -0.76 -1 -0.22 -1 -0.19 -0.98 -0.22 -0.95 -0.2 -2.78 -0.69 -2.75 -0.7
--5.47 -1.3 -2.19 -0.43 -2.17 -0.43 -2.14 -0.41 -2.11 -0.39 -2.29 -0.57 -2.28 -0.54 -2.3 -0.56
--2.3 -0.52 -2.34 -0.5 -2.32 -0.45 -4.6 -0.91 2.06 0.31 2.11 0.32 2.15 0.33 2.17 0.34
--3.37 -0.73 -3.36 -0.69 -3.34 -0.7 -3.36 -0.67 -1.74 -0.24 -1.7 -0.24 -1.71 -0.21 -1.65 -0.22
--1.98 -0.3 -1.95 -0.26 -1.93 -0.28 -1.91 -0.26 -4.37 -0.74 -4.34 -0.71 -4.36 -0.68 -4.34 -0.65
--4.28 -0.61 -4.27 -0.59 -4.25 -0.54 -4.28 -0.5 -3.14 -0.45 -3.21 -0.43 -3.21 -0.41 -3.25 -0.41
--2.08 -0.28 -2.11 -0.26 -2.13 -0.26 -2.13 -0.24 -3.21 -0.26 -6.37 -0.43 -3.19 -0.2 0.84 0.17
-0.82 0.17 0.8 0.17 0.82 0.18 -0.97 0.2 -0.31 0.08 4.17 0.39 2.08 0.22 2.06 0.21
-0.24 0.09 0.24 0.11 0.22 0.09 0.24 0.11 2.73 0.24 2.73 0.28 2.73 0.26 2.74 0.29
-3.36 0.43 3.34 0.43 3.32 0.45 0.96 0.2 0.93 0.21 0.91 0.2 -1.06 -0.06 -1.08 -0.05
--1.07 -0.04 1.24 0.3 2.38 0.65 1.91 0.39 1.87 0.41 1.84 0.39 2.65 0.61 1.3 0.3
-1.78 0.41 1.74 0.43 1.71 0.41 3.91 0.67 3.86 0.71 3.82 0.72 3.54 0.54 3.56 0.56
-3.55 0.59 -0.84 -0.33 -0.89 -0.32 -0.89 -0.3 0.09 -0.2 0.09 -0.21 0.07 -0.2 2.09 0.28
-2.11 0.3 2.12 0.31 3.61 0.67 3.62 0.69 3.63 0.72 3.71 0.75 3.69 0.79 3.69 0.83
-4.88 1.06 p
-4.9 1.11 4.93 1.15 -1.78 -0.56 -1.79 -0.54 -1.8 -0.55 -3.49 -0.93 -3.54 -0.91 -3.56 -0.91
-0.57 0 0.56 0.02 0.57 0 0.59 0.02 -0.63 -0.26 -0.63 -0.24 -1.3 -0.52 1.56 0.26
-3.17 0.57 1.61 0.28 1.87 0.37 1.89 0.39 3.82 0.82 -1.06 -0.32 -1.05 -0.35 -2.16 -0.65
-7.29 1.82 3.62 0.93 3.63 0.97 2.88 0.7 2.89 0.72 2.93 0.74 2.93 0.76 3.62 0.98
-3.62 1.02 3.67 1.04 3.67 1.06 3.64 1.08 3.64 1.11 3.67 1.15 3.71 1.17 3.49 1.15
-3.5 1.17 3.54 1.21 3.53 1.24 2.15 0.72 4.38 1.48 2.24 0.78 3.41 1.24 3.45 1.28
-3.47 1.33 3.47 1.34 0 358.03 -1.37 0.89 -1.74 1.67 -1.63 2.63 0.2 3.29 0.2 3.82
--0.91 2.28 0.04 2.84 0.37 2.38 2.23 3.65 2.13 2.63 1.17 2.56 2.19 3.18 0.74 2.52
--0.89 3.21 0.28 2.47 -0.91 3.21 -0.07 3.34 2.04 3.21 1.74 4.62 2.21 0.35 2.78 1.91
-2.72 1.43 2.78 1.93 2.28 1.84 2.43 3.38 2.22 0.37 -0.29 2.45 1.89 1.82 -0.26 2.91
-2.64 0.95 2.26 1.43 0.56 2.56 0.17 3.04 2.32 2.95 0 179.21 -0.93 -0.84 -1.93 -2.37
--0.26 -2.25 0.54 -2.04 -2.11 -1.81 -2.11 -1.84 -2.13 -1.84 -2.15 -1.75 -2.54 -1.96 -2.06 -2.28
--1.06 -3.04 -2.22 -1.73 -2.43 -0.76 -1.57 -2.62 -1.35 -2 -2.36 -1.21 -2.58 -0.26 -2.02 -0.59
--0.84 -2.32 -2.28 -1.72 -2.41 -1.17 -2.43 -1.15 -2.2 -0.11 -2.23 2.52 -0.17 3.04 -1.15 1.26
--1.5 3.19 -1.56 3.23 -1.04 2.84 -0.11 2.52 -0.96 2.34 -1.89 2.61 -2.32 2.46 -1.95 1.02
--1.8 2.11 -5.73 7.75 -2.62 1.82 -3.45 0.13 -1.28 1.7 -2.08 1.54 -1.24 3.26 -1 2.32
--0.09 2 -1.13 2.8 -1.93 2.56 -2.32 2.46 -2.5 1.37 -2.75 0.8 -1.93 2.56 -1.56 2.67
--2.32 2.45 -2.06 1.55 -2.37 2.45 -2.32 2.45 -1.8 2.04 -2.17 2.02 -2.32 -0.59 -0.02 3.02
-0 3.06 -0.8 2.82 -0.61 -3.66 -0.24 -3.65 0.63 -2.34 -0.93 -1.26 -2.45 1.41 -2.04 1.56
--1.28 1.69 -1.65 1.59 -1.91 2.58 -1.41 2.19 -0.91 -1.23 1.79 -2.06 1.04 -2.28 1.78 -2.1
-2.13 -1.98 2.06 -1.56 1.02 -2.23 1.39 -1.39 0.28 -0.26 0.97 -2.26 2.29 -2.47 1.4 -2.21
-1.89 -2.58 1.8 -2.11 1.88 -2.59 2.06 -1.49 0.2 -2.52 0.84 -1.8 1.89 -2.58 1.99 -1.02
-2.32 -0.96 1.89 -0.57 0.46 -2 0.33 -1.36 2.17 -2.02 0.43 -1.91 0.28 -3 1.13 -3.25
-0.93 -2.32 1.95 -3.06 2.8 -0.84 3.02 -1.82 1.76 -2.12 1.87 -2.61 1.15 -3.28 0.98 -2.82
-1.76 -2.12 1.76 -0.07 1.82 -2.61 3.26 -0.72 2.71 -0.34 2.65 -2.41 3 -1.73 2.16 -2.04
-2.54 -1.93 2.59 -1.84 1.41 -2.73 -2.26 -2.15 1.93 -1.05 2.04 -1.56 2.14 -1.97 1.93 -1.05
-2.63 0.15 2.34 1.7 2.26 2.19 2.99 0.35 2.43 1.19 2.56 2.82 2.89 0.84 2.28 1.76
-2.56 0.28 2.66 1.84 2.7 1.96 1.45 3.16 3.11 -0.08 0.52 -4.67 0.3 -3.62 -0.71 -2.93
-0.67 -3.49 -1.09 -3.54 -0.78 -2.91 -0.89 -2.39 -0.35 -3.25 -0.84 -2.91 -0.79 -3.41 -0.46 -2.78
--0.3 -3.73 -1.87 -2.58 -1.39 -2.52 -0.89 -3.37 -0.97 -2.8 -1.84 -3.1 -1.48 -2.43 -1.89 -3.08
--1.45 -2.96 p
--1.97 -2.5 -2 -2.52 -2.54 -1.63 -1.95 -2.47 -2 -3.02 -2.11 -2 -2.02 -2.43 -1.12 -2.8
--2.5 -3.06 -1.61 -3.34 -1.65 -2.32 -1.17 -3.23 -2.15 -2.41 -2.08 -2.91 -2.28 0.05 0.13 -3.43
--1.65 -3.73 -1.71 -3.82 -1.3 -2.65 -1.28 -3.17 -0.82 -3.08 -0.87 -3.1 2.3 -2.54 2.23 -2.54
--1.34 -3.17 -0.02 -3.45 0.43 -3.77 1.3 -3.23 0.8 -2.8 1.8 -1.15 1.74 -1.65 -0.09 -2.93
--0.54 -3 0.3 -2.86 -0.11 -2.46 -0.61 -3.45 0.68 -3.25 -0.18 -2.93 0.68 -3.3 -0.63 -2.97
--1.52 -2.58 -2.04 -2.69 -1.91 -2.17 -2.91 -2.8 -1.95 -2.13 -3.65 -1 -2.35 -1.21 -2.78 -1.3
--2.02 -2.62 -2 -2.56 -2.56 -3.1 -2.37 -1.24 -2.02 -2.58 -1.93 -1.61 -2.47 -2.11 -0.74 -2.87
-1.56 -1.67 0.5 -3.23 0.39 -3.62 0.61 -2.28 -0.45 -3.26 -0.76 -2.39 0.02 -2.76 -1.76 -2.93
--1.95 -1.54 -2.8 -1.2 -3.76 -1.71 -1.89 -1.02 -2.8 -1.17 -2.3 -3.34 1.65 -0.8 -0.3 -1.8
--0.37 -2.32 -1.36 -2.79 -1.43 -3.25 -1.32 -2.78 -2.45 -1.55 -2.96 -2.02 -1.71 -2.32 -2.12 -2.39
--1.8 -2.78 -1.74 -2.34 -2.59 -2.32 -2.54 -1.95 -2.04 -1.84 -2.61 -2.37 -2.04 -1.84 -2.4 -1.43
--3.32 -1.89 -2.5 -1.91 -2.65 -0.54 -2.97 -0.13 -1.54 -1.37 -3.43 -0.15 -1.93 -1.39 -2.5 0.3
--2.82 0.76 -2.3 -0.98 -2.91 0.34 -3.12 -0.58 -1.91 -1.35 -3.45 -0.13 -3.06 -0.52 -1.89 -1.35
--3.04 -0.11 -1.86 1.63 -1.93 1.67 -1.82 -0.93 0.28 2.17 -0.59 2.08 -1.8 2.95 1.3 0.07
-1.48 1.32 -0.02 3 -1.39 2.95 -1.54 2.11 -1.09 2.13 -0.52 2.99 -1.11 2.15 -0.61 2.99
--1.56 2.13 -2.54 1.63 -1.15 2.15 -1.69 1.67 -0.22 2.6 -0.7 3.02 -0.67 2.61 -0.33 2.19
-0.17 2.65 -1.15 3.02 -0.3 2.21 0.17 2.67 -0.26 3.06 0.59 2.25 -0.83 2.21 -2.17 2.09
--0.82 2.21 -1.76 2.17 -0.8 3.08 -1.73 2.61 -1.3 2.63 -1.32 2.21 -1.85 1.7 -1.3 3.07
--0.37 2.68 0.07 2.28 0.55 2.71 0.06 2.71 1.5 2.78 0.59 2.73 0.98 2.75 1.04 3.21
-1.04 3.26 1.91 2.32 2.43 1.5 1.48 2.37 0.96 2.34 0.56 3.21 -0.48 3.17 -1.41 1.8
--1.39 2.19 -0.91 2.72 -0.95 1.32 2.43 2.88 -0.96 2.72 -1.43 2.25 -0.46 2.73 -1.43 2.71
--1.43 1.76 -0.52 2.3 -0.93 1.34 0 2.32 -1.45 2.21 -1.95 2.24 -1.46 2.28 -1.91 1.73
--1.91 1.76 -1.97 1.8 -2.89 1.72 -1.91 2.71 -1.93 2.25 -1 2.75 -1.47 2.73 2.84 1.96
-0.44 2.82 -0.05 2.8 1.39 2.41 -1.91 0.8 1.39 2.43 0.93 2.39 0.39 3.28 0.89 3.3
--2 2.28 -1.45 2.3 -2.34 0.34 -0.59 2.78 -0.8 -0.02 0 -4.23 1.43 -0.89 -0.93 -1.89
--1.43 0.39 0.93 2.39 0 4.23 -1.52 -0.06 -2.37 -0.54 -2.84 -0.11 -2.82 -0.61 -2.84 -0.54
--2.85 -0.09 -3.32 1.76 -1.02 3.73 -1.48 3.73 -2.86 2.26 -2.84 0.89 -3.28 -0.06 -3.32 -0.5
--2.85 -0.05 -2.82 -0.52 -3.28 -0.93 -1.41 -1.91 -3.79 -0.02 -3.3 -1.87 -2.39 -1.39 -2.32 -0.43
--2.84 -0.93 -2.41 -1.39 -3.28 1.43 -2.84 0.5 -4.25 1.02 -2.82 0.07 -2.39 -0.42 -3.29 -0.41
--3.37 -0.35 -2.37 -1.8 -3.36 -0.39 -2.86 -1.76 -2.32 0.54 -2.82 1.07 -3.27 2.5 -2.8 1.99
--2.26 1.98 p
--2.73 2.95 -3.71 2.13 -2.3 2.43 -2.76 1.59 -2.73 1.58 -2.69 3.02 -0.78 2.43 -0.41 2.43
--0.3 2.86 -1.71 2.46 -2.21 2.54 -2.23 1.58 -1.26 2.5 -1.67 2.47 -2.25 1.17 -0.2 3.84
--2.34 -0.33 -2.15 1.63 -2.19 1.63 0.24 3.36 0.65 2.8 -0.17 3.34 -1.12 2.97 -2.15 1.65
-2.39 1.2 1.54 2.25 1.97 2.18 0.32 3.82 2.3 5.52 0.67 2.79 0.26 2.84 -0.65 2.93
--1.46 3.01 1.91 1.72 0.26 2.84 -1.89 2.61 -2 2.1 0.71 2.8 0.79 2.78 1.84 1.26
-1.54 2.23 1.7 3.69 1.52 2.2 1.93 2.21 2.39 2.2 1.63 3.17 1.11 2.3 1.11 2.76
-1.39 1.3 2.65 1.17 1.46 1.76 1.13 2.75 1.87 2.23 3.77 0.16 3.45 1.15 1.84 2.25
-3.04 1.2 2.22 2.17 1.84 2.26 1.5 3.19 -1.06 2.02 0.37 4.67 1.71 1.3 1.39 2.3
-0.15 1.84 2.15 1.73 1.73 2.28 2.48 1.26 2.8 0.82 2.91 1.7 1.32 2.32 1.3 2.23
-0.89 2.34 1.3 2.76 2.35 0.35 1.07 -1.89 3.03 -1.98 1.98 0.39 3.06 -0.07 1.97 0.39
-2.67 -1.45 2.34 0.48 3.14 1.37 1.17 1.84 2.32 0.43 2.32 0.5 2.3 1.84 2.28 1.43
-3.45 0.48 3.06 0.55 2.25 0.95 2.28 0.05 1.86 0.54 2.7 0.09 2.67 -0.41 1.56 -0.85
-2.26 0.55 1.85 1.48 3.47 -0.78 1.85 1.07 3.49 -0.76 2.23 0.63 1.73 1.52 2.24 0.61
-2.3 -0.28 1.41 -2.71 2.91 1.63 -0.91 -2.43 -1.39 -1.08 1.04 -3.19 1.67 -0.83 0.61 -2.28
--0.93 -2.45 -1.78 -2 -1.41 -1.52 0.58 -2.32 2.06 -0.82 1.93 0.65 0.98 -2.3 2.95 -1.17
-2.45 -0.76 3.15 0.26 3.6 -0.11 2.84 -0.19 2.91 -1.13 2.89 -0.67 0.05 -0.37 0.32 -2.43
-1.37 -1.3 2.58 -1.13 2.89 -0.13 4.1 -0.5 3.5 -1.47 2.69 -1.61 2.46 -0.13 1.82 1.22
-1.39 1.63 0.37 2.43 -0.76 2.32 -1.13 1.74 0.85 2.08 2.36 2.71 2.52 1.37 2.62 0.85
-3.19 0.06 2.89 -0.52 0.87 -2.26 2.8 -0.04 2.89 -0.44 2.75 0.48 1.67 -2.17 2.6 0.96
-2.78 0.04 2.84 0.07 2.13 -0.58 2.54 -0.5 2.73 0.56 3.04 -0.87 2.17 1 1.95 1.91
-2.3 1.99 2.59 1.06 3.12 0.24 0.16 -2 2.16 -0.45 0.22 2.04 1.93 -1.04 2.52 1.08
-3.26 1.37 0.95 2.23 0.7 3.21 -0.15 3.02 -0.11 3.02 0.22 3.11 0.04 3.54 0.67 2.76
--1.28 2.71 -1.26 3.73 0.11 2.06 -1.35 1.63 0.71 2.28 -0.82 1.3 -1.43 -2.5 -1.39 -0.39
--1 0.19 0 -6.55 -1.75 -2.95 1.13 -1.21 -1.78 -0.46 -0.35 -1.43 -1.97 -1.24 -2.69 -0.12
--1.3 1.66 2.06 1 0.79 1.22 1.67 0.91 1.99 1.06 2.21 1.56 0 6.55 -2.3 0.41
--1.17 -2.3 -1.54 -2.41 -1.73 -0.46 -1.52 -1.41 -2.43 0.39 -1.65 1.58 -3.64 0.61 -2.62 -0.16
--0.05 -2.47 -2.87 -2.15 -2.4 0.41 -3.59 1.69 -0.95 -0.21 0 -1.75 -0.2 -2.24 -1.15 -1.43
--0.78 1.56 2.13 2.11 0 1.75 -1.56 -0.33 0.37 1.54 -4.34 -0.91 0.93 2.14 -2.19 1
--0.11 1.98 -2.04 0.52 -0.5 0.11 0 -16.34 0.35 -1.39 1.99 1.39 0.02 -1.65 -2.95 -0.8
--2.95 -0.72 -1.72 0.74 -2.37 0.09 -2.23 -0.39 -0.16 2.37 2.74 0.02 0.56 -0.89 2.13 0.91
-2.04 -0.33 p
-2.54 0.65 0 16.34 -1.91 0.39 -0.13 1.91 1.82 -1.08 0.93 0.71 -1.11 1.23 -1.22 3.17
-0.3 1.52 -3.38 -1.17 -0.16 3.37 1.22 2.19 2.45 0.52 2.41 0.52 2.78 0.61 2.39 0.56
--0.76 1.31 1.91 0.98 -2.98 1.25 -2.71 -0.62 -2.95 -1.13 -1 -1.67 -1.61 -2.11 -1.22 -2.19
--0.32 1.18 1.21 2.16 -1.98 -0.87 -1.87 1.54 -2.54 0.02 -1.62 -0.84 -2.21 0.08 -0.67 -1.56
--2.11 -0.39 1.39 -1.2 -0.37 -1.52 -2.11 -0.39 -2.67 1.91 0.43 -3.28 1.95 -2.08 1.89 -1.59
-1.11 -1.71 1.8 -1.13 1.99 -0.62 0.83 -1.76 2.02 -0.61 -2.76 0.48 0.79 -3.3 -2.61 1.52
--2.65 0 -1.89 1.58 -3.17 -1 2.39 -0.58 2.49 -1.02 2.13 -2.54 -2.32 0.13 1.23 -2.24
-1.83 -3.04 -2.21 1.52 -1.13 -2.08 -1.5 1.65 -1.83 -0.29 -1.04 1.26 -0.13 2.41 -2.6 1.5
-0.71 2.02 1.97 1.3 -3.36 -0.08 -2.29 2.04 -2.04 2.56 -1.45 1.68 -1.91 2.12 -2.09 1.11
--0.57 2.78 -0.28 3.28 -0.15 2.39 -2.37 1.07 -2.45 1.52 -2.69 1.04 -2.89 1.97 -3.54 1.91
--2.47 0.15 -1.26 1.24 -2.62 1.11 -0.3 1.82 -1.25 1.26 -0.76 2.26 -2.97 1.52 -0.07 -1.87
--1.17 -1.08 -1.24 1.28 -0.61 1.85 0.43 1.43 -2.09 0.24 -1.8 -1.58 -1.63 -0.17 -0.11 -1.84
-1.2 -1.29 -0.39 -1.93 0.58 -1.8 1.98 -1.65 1.91 -1.21 2.26 -1.17 1.41 -2.21 0.72 -2.29
-1.25 -1.28 2.32 -1.15 2.67 -1.11 3.51 0.43 -0.73 -1.96 2.28 -0.7 2.73 -1.06 4.77 -2.22
-2.59 -1.97 -0.37 -1.99 -1.52 0.3 -0.73 1.78 -2.21 0.17 -1.93 0.7 -0.76 -1.96 -0.26 -2.88
-2.4 -1.11 0.42 -2.34 -2.02 -1.24 0.38 -2.28 -1.22 -1.56 -0.54 -1.5 -1.45 -0.17 -0.24 1.41
-0.35 2.36 0.89 1.52 -0.73 2.3 -0.57 0.84 0 -6.59 -1.15 -2.52 -0.28 -2.87 0.98 -1.78
--0.43 -1.91 -3.11 0.11 -1.73 1.69 -2.32 0.29 -3.26 1.54 -1.48 -0.13 -1.82 2.19 1.72 1.59
-2.21 0.22 2 -0.79 2.58 0.29 3.28 0.8 2.82 1.28 0 6.59 -0.91 1.37 -0.63 1.8
--3.06 0.61 -1.43 2.15 -1.5 0.34 -2 1.2 -2.08 1.65 -2.82 -0.28 -2.32 1.17 -2.08 2.17
--2.41 2.08 -2.11 -0.17 -0.57 1.84 -2.36 2.1 -1.3 2.24 -0.7 2.75 -2.15 0.22 0 -5.97
-0.28 -2.78 0.52 -1.8 -0.52 -1.95 -0.02 -0.13 0 -3.1 2.04 -2.21 0.59 -2.26 0.24 -2.34
--0.11 -2.36 -0.54 -2.35 -1.84 -0.13 -1.3 -1.97 -2.02 1.76 0.15 2.82 -0.24 2.8 -1.28 2.21
--0.17 1.89 1.13 -0.43 1.39 0.59 1.97 1.99 0 3.1 -0.39 -2.69 -2.37 2.2 -0.54 1.8
-0.15 2.37 2.02 1.08 0.87 1.91 0 5.97 -0.3 0.04 -1.45 0.82 -2.11 0.3 -1.65 -1
--0.87 -1.95 -2.32 -1.02 -2.37 -1.52 -1.56 -1.98 -2.45 -0.56 -2.54 1.28 -2.82 0.35 -2.48 0.84
--1.71 -1.43 -2.39 -1.46 0.43 -2.75 0.48 -3.21 -0.72 -0.5 0 -10.66 2.26 -1.34 -1.43 -2.28
--1.58 1.26 -2.15 0.39 2.9 1.97 0 10.66 -1.36 -0.93 -2.5 -1.95 -2.5 -0.91 -2.15 -0.98
--2.17 -3.23 -2.17 -2.8 -1.48 -2.34 0.35 -2.34 2.23 -1.84 -2.61 -1.84 -1.54 -1.89 -0.74 -2.3
--2.25 0.02 -2.32 -2.78 -1.61 -2.32 -2.65 0.04 -2.64 0.07 -2.72 0.06 -2.66 -0.37 -2.32 -0.87
--2.43 -2.28 p
--2.24 1.06 -1.35 2.87 -0.69 1.43 -2.2 1.52 -1.91 0.09 -1.93 -0.85 -2.21 0.63 -2.74 -0.32
-0.98 2.3 0.24 2.8 0.61 2.78 -1.84 0.11 -0.93 1.91 0.61 2.78 1.63 1.8 0.7 3.2
-0.96 2.75 0.61 2.3 -0.48 2.84 -0.18 1.84 0.56 2.3 -1.45 3.34 1.2 1.32 2.52 0.29
-1.58 2.24 3 -1.57 2.8 -0.15 3.16 0.29 3.11 -0.57 2.71 -1.04 3.56 0.82 3.47 -0.52
-2.41 -0.54 2.13 0.45 1.07 1.39 0.76 3.19 0.37 2.32 0.39 3.21 0.37 3.19 -0.97 2.32
--1.98 1.41 -0.98 1.39 0.37 1.39 -1.58 1.82 -0.66 0.96 -2.6 0.5 -2.22 1.43 -1.95 0.06
--1.59 1 -0.15 2.75 2.25 0.37 1.98 0.87 2.58 0.37 1.21 -1.84 2.61 0.39 2.24 -0.02
--0.57 3.23 -1.24 2.75 2.24 -0.02 0.93 -2.32 1.91 0.43 2.21 -0.45 0.63 2.32 1.54 0.87
-1.89 0.5 1.57 0.89 0.25 2.3 0.59 1.82 2.13 0.95 2.41 1.43 2.11 0.98 1.43 1.84
-1.11 1.84 0.79 1.87 0.48 2.25 1.13 0.55 0.2 -2.71 1.56 -0.87 1.41 1.43 -0.11 1.37
--1.52 0.35 -0.17 2.28 1.95 1.04 3.23 0.18 1.02 1.41 2.34 0.15 1.85 -0.79 0.07 1.8
-1.28 1.46 -1.28 1.26 0.99 1.02 -1.32 1.7 -0.32 2.69 -1.84 1.21 -0.57 2.23 -0.3 2.7
-0.35 1.8 1.2 1.43 2.34 0.67 1.06 1.89 2.06 0.63 0.28 -1.78 -0.48 -2.32 0.26 -1.76
-1.89 0.18 0.28 -1.76 -1.34 -0.74 0 -2.6 1.74 -0.98 0.09 -1.74 -2.09 -0.2 -1.41 2.17
-1.67 0.74 0 2.6 -0.7 -0.39 -0.99 -2.8 -0.76 -2.78 2.15 -1.17 0.2 -1.37 3.34 -1.06
--0.32 -1.82 2 0.19 1.5 1.52 1.3 1 2.19 0.74 1.16 1.49 1.5 -1.69 -1.28 -1.02
-2.14 -0.69 1.81 -0.22 2.58 1.72 2.74 0.8 1.84 2.09 2.56 1.32 2.64 0.87 1.82 -2.5
-1.96 0.33 1.41 1.2 0.2 2.38 2.08 1.79 0.29 2.86 -1.07 2.59 -0.93 3.08 0.5 1.93
-0.21 2.84 2.13 0.93 1.97 -1 1.63 -1.57 1.93 -0.02 1.09 1.65 -1.91 5.21 -1.89 0.04
--1.52 2.02 -0.8 2.19 1.47 1.74 2.24 0.98 2.47 1.04 2.95 -0.17 3.11 0.82 0.58 1.59
-1.59 2.34 3.19 -0.06 -2.17 1.8 -1.67 -0.93 -3.02 1.52 -3.19 -0.87 -2.19 -1.47 -2.24 -1.5
--2.21 -1.5 -2.47 -1 -1.2 0.13 0 -5.54 1.93 -1 -1.52 -0.93 -0.09 0.11 0 -0.7
-2.71 -0.11 -1.13 -1.35 -1.15 -1.36 -1.43 1 1 1.82 0 0.7 -0.48 0.67 0.16 1.15
-0 5.54 -1.74 0.17 -1.89 1 -2.56 0.87 -0.58 1.71 0.07 2.78 -1.41 1.63 0 -21.66
--0.95 -1.43 0.61 -2.24 -1.28 -1.3 -1.13 2.13 0.67 1.65 2.08 1.19 0 21.66 -0.63 0.74
--1.11 2.54 0.2 2.78 1.41 2.63 1.15 3.02 1.26 2.58 0.41 2.89 1.24 1.25 -1.09 2.5
--2.69 1.17 -1.43 -0.78 -1.56 -0.37 -1.95 0 -0.37 -1.89 -1.09 -1.17 0.68 -1.21 -0.63 -1.96
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-0.48 -2.65 0.26 -2.67 0.83 -2.17 2.41 -1.41 2.39 -1.41 1.24 -1.65 -0.35 -1.43 -1.34 -1.61
-1.21 -0.68 -1.89 -1.69 -1.8 -2.15 -0.07 -1.82 0.65 -2.65 0.02 -2.3 0.2 -3.14 -0.59 -3.28
--1.91 -0.29 p
--2.15 -0.28 -1.17 -2.45 0.61 -1.74 -1.91 -0.22 -2.23 -0.26 -0.33 1.76 -1.48 2.13 0.48 1.87
--1.23 1.08 0 -3.41 0.91 -2.08 -1.15 -1.39 1.02 -0.93 -1.85 -1.02 -0.65 0.07 0 -1.26
-1.75 -0.32 -0.69 -0.93 -1.63 -0.67 -1.32 1.23 1.89 0.7 0 1.26 -1.34 0.13 -1 2.63
-2.04 1.3 2.02 1.3 0 3.41 -1.09 0.93 -1.52 2.56 -1.59 2.97 -1.52 2.56 -1.28 3
--1.74 1.19 -0.73 -1.84 -1.52 -0.16 -2 -2.43 -1.33 -1.87 -2.45 -1.52 -2.69 0.25 -2.74 1.17
--1.43 1.29 0.08 2.25 1.39 1.82 -2.25 -0.54 -0.68 1.73 0.85 1.86 -1.67 2.11 -0.41 2.21
--0.67 2.22 1.09 1.78 -1.09 1.71 1.98 1.89 1.69 1.85 1.61 2.32 2.71 0.63 1.13 1.82
-0.82 2.3 1.74 -1.17 1.21 2.32 1.17 2.3 1.15 3.23 1.8 1.95 0.48 2.71 0.56 2.3
-0.33 2.21 0.67 2.32 1.43 2.41 0.22 2.21 1.93 2.96 -2.52 -0.81 -2.14 -0.74 -2.04 -2.06
-1.21 2.36 2.76 1.3 -1.63 1.09 1.65 1.56 1.34 1.95 0.2 -2.62 1.07 1.49 0.7 -1.63
-1.46 2 -1.37 0.2 -0.54 1.72 2.02 1.19 0.89 2.84 2.54 0.5 2.37 1.43 0.79 2.43
-1.41 1.69 2.34 -0.78 0.35 1.89 1.2 1.26 1.23 -2.91 1.09 2.17 1.52 -1.91 0.26 3.32
-2.91 -0.02 2.71 -0.55 2.58 -0.58 -1.26 -2.34 -2.64 -0.33 3.32 -0.87 2.65 0.39 1.11 1.37
-2.41 -0.13 1 -1.56 2.99 0.58 3.06 0.22 3.06 -0.26 3.06 -0.78 3.04 -0.7 2.8 -0.3
-2.95 -0.7 2.17 -1.65 1.78 -2.3 -0.2 -2.17 -1.37 -2.17 -2.14 -1.48 -2.86 -0.13 -2.39 -0.48
--2.23 -0.33 -2.91 0.42 -2.98 -0.14 -2.95 0.96 2.7 -2 2.54 -0.57 3.43 -1.24 1.5 -2.41
-1.26 -2.04 1.47 -2.43 0.31 -0.02 2.95 -0.29 1.43 -0.43 2.13 -0.65 2.9 1.15 -1.61 2.41
--1.71 -0.7 -2.97 1.3 -0.13 2.02 2.13 0.3 2.87 -0.34 2.36 0 2.87 0.71 -2.8 1.86
--2.49 1.52 0.63 2.34 1.2 2.11 0.13 2.23 2.34 0.57 2.08 0 -0.08 2.11 -1.93 2.25
--1.93 0.11 -1.25 2.61 -2.23 2.61 -3.3 1.02 2.91 0.42 2.11 1.13 2.04 -0.55 2.43 -1.43
--1.8 -1.52 0.56 -2.47 2.34 0.22 2.3 -1.02 1.87 1.06 0.52 2 -2.43 2.58 0.93 1.67
-0.81 2.24 0.3 1.97 1.02 1.89 0.33 2.06 0.3 2.04 2.43 -1.95 2.84 -0.41 -1.02 1.76
-1.15 1.48 1.99 0.97 -0.25 2.39 0.43 1.75 2.91 -2.25 1.52 0.59 -1.71 1.32 0.52 1.13
--0.48 1.67 -2.48 0.54 -2.19 0.89 -2.61 -0.24 -2.06 0.28 -1 1.8 3.56 -0.3 3.73 0.65
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--2.24 2.41 -2.25 -0.17 -3.36 1.04 -1.98 -0.63 -1.82 1.13 -1.91 1.96 -2.84 0.76 -2.19 1.61
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-1.11 1.71 2.3 -0.19 2 -0.15 1.28 1.28 -1.61 1.05 1.69 2.11 2.63 0.73 0 120.86
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-2.95 1.45 1.39 2.07 3.34 1.93 1.82 1.7 1.17 2.34 2.56 1.82 1.37 2.61 1 1.97
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--0.8 -2.76 p
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--0.54 -1.15 -2.84 0.65 -4.19 1.47 -1.34 1.39 -1.46 -0.22 -2.32 1.84 -1.91 -0.28 -1.37 1.41
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-2.56 -1.24 3.11 -0.62 1.89 -0.83 -1.13 2.99 3.1 -2.73 1.41 -0.3 -2.84 2.75 1 1.69
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--2.21 1.91 -1.59 2.57 1.26 -4.82 -3 3.5 -0.24 1.63 -2.02 0.37 -1.82 2.52 -1.75 1.47
--2.41 3.67 -2 2.52 -1.35 2.12 0.96 0.61 4.14 -3.45 -2.38 3.05 -1.67 2.56 -1.32 3.73
--1.67 -0.11 -2.43 0.89 -0.49 -1.67 -1.59 2.13 0.63 2.73 -1.98 1.52 1.3 0.65 -1.7 1.54
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-0.54 -2.11 1.3 -1.05 1.76 -2.06 -1.3 3.16 -1.74 2.07 0.45 1.61 -1.67 1.56 -0.49 2.67
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--1.63 3.3 p
-0.46 1.07 -0.91 3.25 -0.87 3.26 -0.13 3.19 -0.46 3.23 -1.04 3.28 0.11 2.08 -1.75 3.36
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--1.5 2.34 0 3.19 -0.7 3.32 0.07 3.19 -1 3.36 0.21 4.26 -1.84 4.05 0.52 2.02
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--1.93 3.3 -2.52 2.36 -2.58 2.91 -1.61 1.06 -3.34 3.19 -2.61 3.63 -2.34 1.26 -3.34 3.89
--3.43 5.64 -2.19 4.16 0.08 3.43 -1.8 5.28 -0.98 3.84 -1.61 2.87 -0.87 2.71 -1.61 4.12
--0.87 3.86 -2.32 5.6 -0.74 3.88 -0.76 3.89 -0.74 3.91 -1.39 4.21 -2.14 3.4 -0.61 4.51
--1.32 3.67 -1.32 3.06 -2.06 2.82 -1.35 2.52 1.59 1.67 -1.2 4.34 -0.41 3.95 0.24 3.04
-2.38 1.93 2.37 1.28 1.52 0.5 1.09 3.19 0.93 2 -1.74 0.91 -0.78 -3.37 -1.35 4.47
--1.3 1.97 0.86 0.76 0.43 3.56 -0.08 5.16 1.93 0.24 0.52 3.54 2.11 1.37 1.06 4.52
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-1.96 2.08 -0.91 3.04 1.43 3 0.39 3.62 0.76 3.39 0.75 4.73 1.02 2.56 -0.63 3.66
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--1.79 -0.82 -1.97 0.02 -0.33 -2.52 1.02 -3.34 -2.46 -0.39 -1.8 0.56 0.81 4.17 -1.96 1.34
--0.3 2.93 -1.59 2.52 -1.73 1.93 -1.29 -0.41 -0.43 2.41 -1.71 1.95 1.39 3.2 -0.5 3.21
--1.37 3.99 -0.16 2.98 -1.99 -1.28 -0.22 1.58 -1 1.61 0.41 3.3 1.31 2.63 1.02 2.86
--0.63 3.5 -0.56 3.49 -0.35 4.14 -0.22 3.26 0.02 3.9 1.13 -1.06 0.04 3.88 -1.24 -1.17
--1.95 1.87 -1.33 1.32 -0.91 3.3 -1.32 1.37 -0.07 2.52 -0.82 3.34 -1.55 1.65 -1.04 2.78
--0.74 3.38 0.11 3.43 -0.18 3.69 0.18 4.28 0.11 2.56 -0.3 3.13 -0.61 2.58 -0.82 2.11
--1.34 1.8 -2.24 0.13 -2.41 0.46 -0.93 3.21 -0.91 3.36 -1.15 2.74 -0.3 3.6 -0.26 3.61
--0.82 2.55 -0.18 3.65 -0.5 3.04 -0.43 3.14 0.48 5.14 0.48 3.91 -0.5 1.02 -0.82 2.93
--0.21 4.43 1.2 4.17 0.54 4.27 0.11 4.17 1.58 5.02 1.76 4.68 1.69 0.13 0.89 2.35
-2.11 0.73 1.54 2.09 0.7 2.99 2.97 4.91 1.15 3.45 1.52 4.41 1.24 3.45 2.04 4.86
-1.21 3.78 1.32 3.88 2.71 4.86 0.74 4.45 1 3.34 1.34 1.43 1.91 1.11 1.68 3.04
--0.18 1.13 1.65 2.97 2 4.95 2.8 2.73 0.18 3.1 2.64 4.97 2.73 4.93 2.87 3.73
-2.41 3.65 1.95 2.04 2.95 3.62 2.52 2.06 0.97 2.7 1.55 2.71 -0.46 1.17 1.63 3.86
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-1.37 4.29 p
-1.93 4.45 1.52 3.88 1 4.56 2 0.8 2.78 2.84 2.67 4 1.23 3.75 1.76 3.43
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-1.93 3.28 1.95 3.3 2.58 4.49 1.11 3.21 3.55 3.25 0.54 1.56 2.59 2.04 1.65 2.76
-1.56 1.17 2.15 2.73 2.69 2.73 3.32 3.82 3.25 3.02 2.82 2.99 2.46 3.73 0.24 1.54
-2.19 1.8 0.29 1.52 1.54 3.04 1.65 3.41 1.85 4.14 3.28 1.95 3.88 4.23 3.21 3.13
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-0.82 -0.2 1.11 1.78 -1.69 -0.83 1.3 2.52 2.11 0.7 2.32 2.63 2.87 2.56 2.91 1.58
-2.3 1 2.67 2.04 2.25 2.15 1.71 0.67 2.93 0.3 3.26 0.97 3.71 2 2.69 1.89
-3.54 1.54 3.55 0.37 3.65 0.66 3.23 0.78 3.41 1.08 2.56 0.22 1.52 0.63 1.43 0.56
-2.3 0.67 -1.32 -2.82 2.41 3.14 2.45 0.96 2.39 0.91 3.86 1.8 3.3 1.63 2.02 1.04
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-1.49 1.06 1.91 1.36 2.93 2.61 0.26 0.22 2.61 2.67 3.86 2.82 2.22 0.3 3.12 1.65
-3.87 1.17 3.34 2.54 4.29 1.74 0.93 0.39 2.98 1.87 4.27 1.43 0.29 -1.65 2.21 0.8
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-1.2 0.87 1.72 1.22 2.97 2.06 4.36 1.59 4.77 1.34 3.34 0.78 2.58 1.52 3.47 1.15
--3.34 0.96 -0.8 1.97 2.78 1.52 0.67 1.97 1.06 2.11 3.21 1.98 -0.29 -1.65 2.54 0.5
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-0.39 1.91 2.93 2.54 2.3 1.91 -0.11 1.63 3.11 1.82 3.32 2.13 3.73 1.87 1.93 1.56
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--11.16 -1.87 -3.38 -0.63 0 -155.23 -1.48 -2.82 -1.15 -2 -1.32 -2.14 -2.7 -0.19 2.37 2.25
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--2.47 -2.19 p
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-3.88 0.87 2.91 1.54 3.99 0.26 0 180.75 -4.6 -1.54 -5.32 -1.89 -5.34 -1.89 -5.3 -1.98
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-0.97 1.76 2.52 1.82 2.32 2.23 1.54 0.04 3.04 2.58 3.12 2.56 4.64 2.45 0 184.62
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--1.41 -0.84 -1.43 -0.87 -0.65 0.06 -0.67 0.07 2.43 1.48 1.46 0.69 1.48 0.68 0 57.83
--0.63 -0.29 -5.16 -2.34 -5.14 -2.34 -5.1 -2.45 -2.49 -1.17 0 -59.44 -0.98 -0.85 -0.95 -0.87
--2.97 -1.32 -2.97 -1.34 2.17 1.46 2.2 1.47 1.75 0.74 1.76 0.71 0 59.44 -2.61 -1.26
--5.05 -2.52 -5.06 -2.54 -5.04 -2.6 -1.99 -1.04 0 -61.09 -1.15 -0.74 -1.15 -0.76 -0.63 -0.58
--0.63 -0.57 -2.23 -1.26 -2.23 -1.3 0.58 0.63 0.61 0.65 0.87 0.72 0.89 0.74 0.96 0.37
-0.93 0.35 1.61 0.89 1.59 0.87 0 61.09 -3.02 -1.59 -4.97 -2.69 -4.34 -2.37 0 -61.39
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-0.75 2.39 0.13 2.91 -1.52 3.02 -2.12 0.64 -2.15 2.52 0 2.91 -2.26 2.13 -4.54 2.28 S
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-2.39 1.13 -0.37 2.91 S
-696.4 1085.94 0.5 2.76 2.29 2.54 0.49 2.75 S
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-0.5 3.28 -0.63 2.88 -0.26 2.91 -0.63 2.88 0.25 2.91 0.24 3.77 2.65 1.52 2.15 2.12
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--2.63 2.52 -2.64 0.5 -2.78 -0.5 -2.63 0.5 -2.64 2.02 -2.65 0.63 S
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--2.39 0.89 -2.75 1.52 S
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--2.91 0.24 0.39 2.9 -0.39 2.78 1.89 2.63 S
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--1.89 -0.75 -1.63 -1.63 -2.15 0 -1.76 -0.76 -2.65 -0.5 -2.52 2.25 -1.76 -1.62 -1.5 1.63
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-0 7.05 0.5 3.28 1.65 2.41 1.13 3.28 2.15 3.39 1.23 3.41 1.52 3.78 2.02 2.02
-2.02 4.91 S
-520.03 1388.26 0 1.65 -1.02 2.26 -0.24 4.03 -1.15 1.76 -0.87 1.65 -1.89 0.87 -1.39 2.28 S
-513.48 1402.75 -2.12 0.37 -1.89 1.02 -1.39 3.02 -2.64 0.13 -0.5 3.02 -0.76 2.52 2.52 0.52
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--0.87 1.26 0.37 3.41 S
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-1.37 3.26 1.78 1.52 0.37 4.04 1.75 3.77 2.15 1.89 2.13 3.02 2.28 3.04 2.25 3.02
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-0.76 -2.14 1.63 0.49 S
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-1.26 1.89 1.02 3.91 1.5 3.41 1.25 3.54 1.76 3.14 1.78 3.02 2.76 2.02 2.78 2.02 S
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-1.76 3.02 0.13 -1.75 S
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-2.02 -0.49 1.26 -1.13 1.39 -1.26 2 -0.39 S
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--1.25 1.13 1.25 2.54 -0.12 1.63 1.75 0.63 0.89 1.52 2 1 2.4 0.89 0.64 0.87
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--2.41 -1.52 -1.25 -2.52 0.39 -2.28 2.76 0.52 2.78 0.63 2.25 1 S
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--0.62 3.02 2.12 2.41 0 1.26 -2.64 -1.39 -3.02 -1.13 -1.63 -2.15 -1.13 1.52 -2.28 0.37
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-2.38 0.63 S
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-0.5 -1.76 2.41 -1 2.38 -1.78 2.63 0.76 2.41 0.76 2.52 1 S
-726.48 1529.6 3.26 -0.37 2.91 -1.26 3.13 0.37 2.28 0.39 1.76 3.91 2.15 1.63 0.24 3.54
--1.89 1.26 1.52 2.15 -2.02 2.13 3.41 0.13 -0.26 2.02 -1.76 2.02 0.63 2.13 -2.14 2.14
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--2.88 -0.99 -2.52 0.24 -2.26 -0.74 -3.15 0.74 S
-738.17 1578.11 1.76 3.67 -0.63 1.39 1.39 2.63 1.76 1.26 2.76 1.91 1.75 2.13 2.52 1.39
--0.74 1.64 -1.15 1.26 0.26 2.39 2.15 0.76 0.24 2.26 1.02 2.52 0.37 2.28 -2.39 1.5
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-0.76 3.02 1.76 2.54 S
-682.31 1579.25 1 2.64 1.63 2.76 1.39 3.28 3.02 1.52 2.41 1.63 2 2.28 4.67 2.26
-0.37 2.91 -1.26 2.39 -1.13 2.39 1.39 3.91 0 2.52 0.37 2.28 2.02 2.78 1.26 3.26 S
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-3.52 2.65 0.13 1.89 -0.76 1.25 2.52 2.02 3.15 1.25 3.88 1.39 5.55 1 3.52 0.13
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-7.29 -0.26 3.15 1.26 4.91 0 1.75 2.15 1.15 -2.02 -1.26 -1.39 -0.13 -2.78 3.28 -0.73 S
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-1.99 1.13 0.39 2.41 -0.63 1.89 -3.27 -1.15 -3.78 -1.49 -3.64 -1.39 -2.78 1 -2.62 -1
--1.52 0.89 3.41 2.88 3.26 0.89 2.78 0.87 2.88 2.64 -4.77 0.26 3.14 2.25 2.65 1.89
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--3.91 -2.52 -2.64 -3.41 S
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-2.65 -1.63 3.91 2.25 3.38 3.28 -3.38 0.36 -2.28 1.26 -2.89 -3.39 -2.25 0.76 -3.91 -0.76
--0.5 2.13 1.37 3.41 S
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--2.64 0.37 1.75 2.02 2.26 2.02 -0.37 2.39 -0.13 2.52 2.02 2.14 1 2.15 2.02 -0.52
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--2.41 1.13 1.39 1.39 3.77 -0.39 -2.52 1.89 2.02 1.26 3.77 0.26 4.91 1.39 -2.89 1.39 S
-806.36 1716.69 0.24 1.63 3.14 0.13 0.39 2.26 0.24 2.54 -0.5 1.63 2.52 0.89 1.26 1.63
--0.5 1.65 -2.28 0.87 3.78 1.39 3.64 0.89 3.54 1 3.14 1.88 2.63 0.63 3.28 0.63
-2.26 1.52 1.78 1.39 3.25 0.76 2.91 1.5 4.27 0.89 2.89 1.39 2.52 1.13 3.77 -0.26
-4.02 1.65 2.02 -0.39 4.14 0.52 1.26 2.52 3.14 1.26 2.28 2.52 2.63 1 1.65 2.28
--0.39 1.89 0.39 1.63 3.28 1.52 3.02 1 -0.62 1.91 -3.41 0.74 -4.41 0.26 -2.76 1.52
--3.91 0.37 -3.38 0.76 0.37 1.52 4.91 1.25 1.39 -1.39 2.52 0.63 2.89 1.63 2.89 1.65
-2.39 2.13 -2.25 0.26 S
-878.56 1775.26 -3.28 -0.26 0.39 1.39 -1.89 0.89 -5.16 -0.5 -4.02 -1.25 -3.78 -0.39 -1.89 -1.5
--2.52 -1.39 -0.39 1.63 -3.02 0.89 -0.62 1.75 4.16 1.63 1.37 2.02 4.04 0.13 2.02 1.52
--0.26 1.13 1.26 2.38 0.37 2.65 -4.02 0.76 S
-861.33 1788.74 -2.52 1.26 -3.78 1.02 -3.14 0.87 -3.52 -1 -2.15 -2.14 -3.77 1.13 0 1.25
--2.75 0.89 -1.89 -1.26 -5.79 -1.89 -4.41 0.37 0.13 -1.26 -3.02 -0.76 -2.02 -1.12 -1.89 1.75
--1.5 1.79 1.5 2.02 1.26 2.13 2.91 2.41 0.87 2.26 3.91 1.52 3.52 2.02 1.39 2.13
-4.14 2.02 3.78 2.64 -1.63 0.5 -4.41 -2.52 -3.02 -2.15 -3.54 -1.63 S
-829.99 1802.97 -1.87 -1.63 -3.77 -1.78 -3.28 -2.13 -3.14 -1.89 0.13 -1.65 -2.28 -1.89 -3.02 -2.52
--0.37 -1.89 -2.02 -2.65 -2.12 -2.39 -0.52 -1.65 -0.11 -1.88 3.52 0.89 0.5 -1.26 -1.63 -1.89
--0.26 -2.02 1.25 -1.65 -0.37 -1.75 -1.89 -2.39 -2.39 -1.25 0 1.5 2.26 2.02 -2.26 1.52
--0.52 2.02 -2.5 -0.5 0.24 1.63 -3.28 -2.02 -1 -2.02 -0.62 -2.02 -2.78 -1.49 0.76 -2.02
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--3.91 -0.39 -4.28 -1.5 S
-741.55 1742.51 -4.01 -0.52 -4.66 -0.87 4.14 -0.26 4.3 0.39 3.01 -0.39 3.78 1.52 -1.25 -1.26
-2.12 -0.75 -3.38 -0.5 -1.89 0.37 -3.64 -0.37 -2.65 0.24 0.24 -1.37 1.52 -0.89 -2.89 -0.63
--3.14 -1.02 3.14 2.14 -0.89 1.39 -3.52 -0.26 -0.76 -1.26 -2.65 0 S
-728.47 1738.21 -2.76 -0.5 -2.39 -1 -3.14 -1.65 -3.64 -1.13 3.75 0 4.93 1.39 3.76 1
--2.39 -1.26 -1.12 -1.39 -2.02 0.26 -3.39 -0.89 -3.14 -1.26 -3.02 -1.76 -0.39 -1.89 -2.52 0.89
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--2.25 -0.26 -3.91 -2.89 -2.52 -2.64 -3.25 -2.78 S
-673.76 1710.5 -3.41 -2.39 -3.28 -2.52 -2.76 -2.39 0.76 -1.65 -3.4 -0.76 -2.52 -1.89 -3.38 -1.89
--0.76 0.26 -3.41 -1.89 -3.02 -0.13 1.26 0.63 -0.37 1.26 2.13 -0.76 2.65 2.52 1.13 2.4
-3.28 3.39 -1.52 -0.13 -2 -1 -3.41 -1.62 -3.77 -1.79 -2.39 -0.87 -2.52 -1.02 -2.39 -3.14
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--3.67 -1.49 -2.62 -1.89 -3.64 -2.02 -3.28 -1.02 -3.02 -0.24 -1.65 -0.76 -2.25 -2.02 -2.65 -2.15
--2.38 -0.99 -2.89 -1.52 -2.89 -2.64 -2.28 -2.52 -2.13 -0.76 -1.25 -2.52 1.63 0.89 -1 -1.76
--0.89 0.11 -3.14 -2.52 S
-580.41 1667.17 2.25 2.78 -2.89 -1.76 -2.64 -2.28 -0.5 -1.63 -2.76 -1.39 -1.52 -0.5 -2.89 -3.54
--3.14 -3.15 -3.91 -4.14 -3.27 -2.02 -1.89 -4.16 -1.63 -3.41 -1.5 -3.02 -0.26 -1.52 -2.25 -1.75
--0.26 -1.63 -2.39 -3.67 -2.89 -3.02 -3.28 -3.02 -3.28 -3.78 -2.64 -2.78 -2.26 -2.78 -1.52 -1.12 S
-533.09 1613.89 -1.63 -2.78 -2.52 -2.02 -0.63 -1.5 -3.52 -3.28 -1.12 -3.27 -2.52 -4.4 -2.02 -3.41
--1.89 -3.28 -2.52 -2.14 -1.5 0.63 0.5 3.14 -2.02 -4.01 -1.88 -2.65 -0.89 -2.52 -1.37 -3.28
-0.11 -2.02 -1.76 -3.41 -1.25 -3.78 -2.63 -3.91 -2.78 -2.89 -2.02 -0.76 -1 -4.66 -1.52 -3.91
--2 -4.41 -1.25 -4.3 S
-491.47 1545.09 -3.28 -5.53 3.14 0.37 1.89 4.03 2.26 4.93 -0.24 1.89 2 3.64 1.02 0.13
-1.63 3.52 1.76 1.89 2.52 4.43 2.78 3.52 2.52 5.16 2.75 4.17 1.76 3.78 2.91 3.41
-2.39 3.78 2.38 4.14 2.39 3.66 1.52 3.15 2.12 2.88 2.39 1.65 2.65 2.76 2.52 2.41
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--1.26 -3.77 -1.99 -4.93 S
-495.12 1528.97 -1.26 -3.39 -1.52 -4.4 -1.13 -3.54 -3.02 -4.91 -0.63 -2.91 -1.52 -2.15 -2.12 -0.74
--0.89 -2.28 -1.75 -0.13 -1.76 -4.77 -1.52 -4.93 -0.11 -4.14 -0.52 -4.29 -1.26 -4.14 0.26 -4.54
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-0.26 -3.65 0.37 -3.53 S
-479.25 1445.21 1.13 -2.76 0.89 -3.41 0.89 -3.14 2.52 -0.52 2.13 -0.11 1.39 -1.78 0.87 -2.12
-0.52 -2.52 0.37 -3.17 -0.13 -2.63 -0.12 -4.29 0.13 -3.64 -0.12 -3.41 0.75 -3.41 1.02 -2.75
-1.63 -1.65 0.76 -3.41 0 -2.52 1.39 -1.26 0.87 -3.38 1.39 -1.26 1.89 -1.91 1.25 1.15 S
-500.65 1391.3 0 -3.78 -1.12 1 0 -3.91 0.24 -3.27 0.26 -4.14 0.63 -3.41 0.63 -3.54
--1.02 -2.89 -1.37 -2.65 -0.39 -3.27 1.02 -1.62 0.24 -1.52 1.89 1.26 0.26 -3.02 1.39 -4.04
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-1.89 -1.39 -0.76 -4.14 1.76 -0.5 2.52 0.37 -1.13 3.28 0.37 2.52 2.02 0 1.76 0.89
-1.76 2.13 1.39 -0.87 1.13 -2.78 0.13 -3.54 1.39 -0.74 -1.65 -1.65 0 -4.54 0.89 -3.91
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--1.79 -3.41 -2.52 1.39 S
-513.84 1291.91 -1.99 -2.65 -0.14 -3.14 -1.88 0.5 0.26 -3.4 -2.41 -0.5 -3.25 -0.76 -1.02 -4.54 S
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-0.13 2.26 -0.13 2.52 S
-733.9 1696.53 -3.28 -2.65 -0.76 -1.76 0.37 -1.89 -0.99 -1.26 2.14 -0.13 0.5 -1.75 0.5 -1.65
-3.02 -0.37 1.13 -1.64 0 -2.39 1.89 1 -0.62 -2.65 1.65 2.54 0.5 1.63 -0.63 1.75 S
-739.3 1685.3 -1.39 0.52 -2.02 0.74 0 1.52 1.75 1.89 2.02 1.02 1.02 2.63 -1.89 -0.74
--2.91 -1.65 0.26 1.65 -2.26 -0.13 -1.15 1 1.15 2.78 S
-711.87 1679.38 -1.26 -2.52 2.15 -0.37 0.63 -1.65 -0.52 -2.52 0.89 -1.89 1.39 1.78 0.24 1.5
-2.02 1.88 0.26 1.26 -2.52 0.63 -1.39 0.89 -1.89 1 S
-693.12 1652.93 1.52 -1.76 2.89 1.02 2.78 0.99 1.63 -0.89 3.28 2.41 -2.78 0.13 -2.13 0.11
--2.78 -1.89 -2.26 -0.13 -2.14 0 S
-674 1634.18 -2.02 -1.91 -3.14 -2.26 -1.37 -2.28 -2.15 -1 0.39 -2.14 -3.04 -2.02 1.26 -0.87
--2.63 -1.13 -2.64 -1.15 -2.65 -1.5 1.39 -1.15 4.28 1.64 S
-661.68 1618.42 2.38 2.52 3.41 3.27 3.02 2.26 3.01 2.54 3.15 2.26 0.24 1.89 -0.11 1.65
--2.78 -0.63 S
-671.88 1638.96 -3.15 -2.39 1.63 -0.5 -1.39 -2.02 -1.75 0 -3.15 -1.52 -1.39 -2.52 S
-662.67 1630.01 -2.38 -3.28 -2.13 -1.13 -2.02 -2.02 -2.02 -0.89 0.89 -2.02 2.52 2.14 1.37 1.76
-1.89 1.89 2.78 0.89 0.37 1.75 -1.26 0.89 S
-662.67 1630.01 3.67 2.39 1.63 0 2.13 1.02 2.02 2.88 -0.23 2.65 S
-638.29 1589.46 0.63 -1.52 2.13 -1 -1.89 -2.91 2.41 -1.26 2.39 -1.12 3.39 -0.39 0.63 -1.37
--2.75 0.5 -1.89 -1.39 1.37 -1.63 -1.63 -3.04 1 -1.89 2.64 -1.26 1.65 -1.89 -1.26 -1.12 S
-647.09 1568.17 0.73 -1.39 1.89 2.52 2.28 1.52 0.87 2.02 1.88 1.5 -1.13 2.02 1.26 2.52
-2.26 3.04 -1.13 2.26 0.5 3.15 -2.39 -0.37 -2.25 0.76 -2.39 -0.39 -1.89 0.13 -1.76 1.39
--2.52 0 -2.52 0.38 -2.52 0.26 S
-631.99 1568.29 3.02 -0.62 -2.75 -1.15 -1.89 -1.26 -3.4 -2.12 -2.52 -1.39 -2.02 -2.14 -3.14 -2.65
--2 -3.41 0.74 -1.26 1.52 -0.5 2.25 0.89 3.28 2.13 2.52 2.65 1.89 2.41 2.14 1.76
-2.63 1.26 2.52 1.39 2.65 -1.02 3.14 1.26 0.87 -1.37 -0.24 -2.02 0 -2.15 -1.25 -2.14
--3.02 -2.65 -3.54 -0.87 -1.62 -1.65 2.39 0.39 1.76 -0.63 -2 -3.04 -2.02 -3.02 S
-633.88 1545.36 2.52 -0.76 3.02 2.78 3.02 1.63 2.38 1.52 1.39 2.02 -0.99 -3.54 0.36 -3.38
-2.39 0.63 1.89 4.02 1.63 3.67 -0.87 3.28 -0.75 2.13 -1.26 1.78 -0.76 2.26 -0.73 1.39
--1.52 -2.02 -1.39 2.39 -0.24 1.52 -1.26 1.02 -2.52 2.12 -0.39 0.76 -2.25 -0.5 -2.78 -0.89
--2.76 -0.87 S
-646.7 1559.85 0.39 -2.52 0 -2.14 2.52 1.52 -1.52 1.13 -1.39 2.02 S
-625.07 1542.08 0.13 -3.14 1.13 -1.63 1.63 -1.26 2.41 -0.52 2.13 -0.76 2.64 -0.62 2.39 -0.37
-2.52 0.5 -1.39 1.78 -1.49 1.89 -1.89 -0.39 -0.39 1.65 -1.62 1.13 -2.39 -0.62 -2.52 0.75
--1.26 1.63 -2.02 0 S
-640.17 1538.8 0.63 -1.76 2.25 -1 1.26 -1.52 0.89 -2.02 1.75 -1.13 2.25 -0.89 2.15 2.65
-1.99 1.13 -2.12 0.76 -1.89 -0.37 -1.13 2.13 -1.52 1.02 -1.75 1.26 -2.15 0.87 -2.62 -1.13 S
-458.75 1307.01 -1 -3.52 0.89 -2.91 -1.52 -0.87 1 -2.15 1.65 1.52 -0.39 3.91 -0.63 4.02 S
-587.96 976.97 1.39 -3.27 1.37 -2.15 2.15 -4.28 2.52 -0.52 -0.89 2.64 -1.89 2.15 -0.11 2.15
--1.64 2.12 -2.89 1.15 S
-653.88 912.59 -0.89 -0.63 -1.52 0.39 0.52 -1.52 -1.65 -0.13 2.02 -2.89 1.63 -0.89 1.52 1.26
-1.13 -0.89 -1 -1.75 2.75 -2.78 -1.36 0.39 -3.04 2.65 1.15 -2.9 -1.89 0.75 -3.14 0.63 S
-650.11 904.28 -2.65 1.26 -4.14 1.52 -3.28 1.13 -3.41 1.25 1.89 -1.39 2.78 -1.26 2.02 -0.24
-0.37 -1.65 2.78 -1.13 1.37 -1.39 1.89 0.26 2.39 -1.89 1.39 0.24 1.39 -1.39 4.14 -1.5
-2.91 -0.62 0.5 1.13 2.26 -1.75 2.38 -0.63 1.52 0.63 3.28 -1.02 -2.78 2.15 2.52 0.37
-1.25 1.65 2.52 0.37 0.87 0.5 -1 1.39 -2.02 -0.24 -2.39 0.74 -2.52 1.29 -3.26 1.13
--3.54 1.63 -2.12 1.76 -1.89 1.91 -3.64 2.13 S
-675.39 918.88 4.14 -2.12 0.63 1.39 1.52 -0.39 1.63 -1.25 2.02 0.5 0.13 1.39 2 1.15
--1.37 1.75 -2.78 0.76 -1.63 -1.02 -3.14 0.89 -2.52 -0.76 2.52 -1.62 S
-678.54 919.54 0 -1.52 -3.15 0.87 S
-768.1 910.83 3.54 -1.13 3.25 -1.15 3.41 -2 -0.26 1.63 -2.25 1.25 -3.65 1.13 -4.03 0.26 S
-596.89 1304.12 2.76 -1.12 1.52 1 0.74 3.14 -3.25 0.76 0.63 -0.89 -0.63 -2.52 -1.76 -0.37 S
-568.71 1334.36 0.89 -2.52 -0.26 1 -0.62 1.52 S
-546.31 1394.45 1.25 -0.89 0.26 -3.02 1.26 -1.76 1.63 0.24 1 -1.49 1.26 -0.89 0.26 2.52
--1 2.15 -1.65 2.02 -1.49 1.76 -2.02 0.13 -0.76 -0.76 S
-541.54 1430.73 -0.13 -1.39 -0.76 -0.5 0.5 -0.89 1.39 -0.37 0.5 2.13 -0.11 1.75 -1.39 -0.74 S
-536.37 1436.63 2.02 -2.13 1.63 1.63 1.76 -1.89 2.02 0.5 1.89 0.52 S
-545.68 1435.27 1.25 -2.02 1.76 -2.52 -2.13 0.5 0.24 -2.52 1.39 -2.02 2.38 -2.28 0.26 -2.52
-1.13 -1.63 1.13 -2.52 2.02 -0.89 0 -1.52 -1 -2.75 0.74 -3.54 2.65 -2.02 -0.5 -2.65
--1.89 -0.5 -1.62 -0.87 2.39 -1.89 2 -0.76 1.89 -1.39 1.52 -1.88 1.76 -1.39 1.76 0.13
-2.02 -0.76 0.26 1.26 -1.02 0.63 -0.24 2.89 -1.52 1.9 -1.5 0.38 1.5 2.25 -1.26 1.65
--1.39 2.02 -0.74 3.41 -1.02 2.13 -0.63 2.65 -0.87 3.02 -1.26 2.41 -1.65 1.39 0 3.02
--0.74 2.26 -0.89 2.28 -1.52 1.39 -1 2.52 -1.63 1.5 -2.15 0.52 -1.75 1 -1.89 1.02
--2.38 0 -1.89 -0.52 S
-539.65 1438.02 -1.12 -2.02 -2.15 0.63 S
-560.92 1385.11 1.63 -3.77 1 0.63 1.89 -1.39 1.39 -1.5 1.89 -0.52 1.76 -1.89 0.26 -4.14
-2.39 1.76 0.63 1.65 2.39 -0.26 -0.63 -1.52 2.25 -0.76 2.65 -0.37 2.02 -1.13 0.5 -2.91
-2.38 1.78 -0.62 3.65 -2.89 2.88 2.26 0.52 -2.26 1.5 0.13 2.41 -2.02 2 -1.76 1.65
--2.52 1.76 -1.76 -0.24 -1.52 3.02 -2.26 1.52 -1.89 -0.63 1.89 -1.29 0 -2.75 -0.89 -2.02
-0.5 -3.64 -2.26 -0.52 -1.89 1.25 -1.13 2.15 -1.63 1.76 -1.89 -0.64 S
-588.84 1364.97 1.5 -1.39 2.02 -0.52 1.63 -0.87 1.65 1 -0.76 2.28 -2.39 1.26 -2.38 1.39
--1.26 -3.15 S
-607.71 1342.67 -0.24 -2.15 1.23 1.15 S
-608.7 1341.67 1.15 -0.52 -0.26 1.89 -0.89 -1.37 S
-608.7 1341.67 -0.99 1 S
-607.96 1332.59 0.87 -2.78 0 1.13 -0.87 1.65 S
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-0.89 3.64 -0.75 0.76 S
-571.09 1398.85 1.76 -1.26 1.89 2.02 -1.37 -1.02 -1.02 1.39 -1.26 -1.12 S
-571.59 1448.25 0.13 -2.02 2.15 -0.39 1 -0.87 -0.37 -1.52 -0.13 1.26 -3.15 1 0.37 2.54 S
-576.63 1445.07 0.13 -3.64 -2.38 -2.39 1.89 2.75 0.37 3.28 S
-574.61 1434.75 0.76 -3.91 -1.5 -2.76 S
-575.5 1426.82 -0.37 -3.9 S
-573.48 1419.88 -0.87 -6.04 S
-574.24 1412.2 1 -2.88 -2.39 -1.26 S
-577.39 1406.54 1.25 -1.52 S
-577.65 1400.37 2 0.37 1.78 -2.89 S
-555.12 1443.82 2.02 -0.87 S
-612.74 1486.92 1.89 -0.26 1.75 1.39 S
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--1.39 -1.02 S
-706.08 1534.14 0.63 -2.63 -0.37 -1.65 0.75 -2.02 1.39 -1.63 1.5 -1.12 0.5 2.25 -0.63 1.76
--0.73 1.89 -1.26 1.78 -1.78 1.38 S
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--1.02 2.02 1.26 1.76 -1.76 -0.64 S
-739.17 1623.72 1.26 -1.52 3.41 -0.37 0.49 0.24 -0.62 1.26 -1.65 0.89 S
-742.05 1624.21 -2.88 -0.49 S
-743.58 1617.17 -3.52 -1.76 -1.02 -1.64 2.91 0.63 2.5 1.13 -0.87 1.65 S
-708.36 1595.38 1.25 -1.02 -3.27 -0.13 0.89 -1.26 1.89 0.26 -2.41 -1.65 3.64 1.65 1.02 1.52
--3.02 0.63 S
-687.35 1587.43 -0.14 -2.14 0.14 -2.26 1.88 2.26 -0.13 1.39 -1.75 0.76 S
-711.74 1514.75 -1.25 -2.4 2.78 -0.5 2.13 -2.02 2.14 -1.39 2.25 -1.39 1.65 -1.5 -1.15 -1.78
--2.5 -0.37 1.5 -1.52 3.27 1.65 1.63 -0.26 1.13 -1.26 -2.52 -2.12 2.41 0.37 -1.39 -2.15
-1.75 -1 2.26 2.39 2.28 2.28 -1.89 0.37 2.52 2.14 -1.25 0.14 -2.52 -1.52 -0.13 1.26
-1.63 1.39 4.17 1.26 -2.65 0.87 S
-729.99 1507.68 0.5 2.02 3.02 1.39 -0.86 1.65 -1.89 1.13 -2.28 0.76 -0.37 2.64 2.12 0.5
--0.99 1.89 -3.39 -0.39 2.89 1.91 2.13 1.13 3.04 1.63 2.63 2.14 -1.26 0.76 -2.89 0
--2.15 -1.02 -2.38 -1.63 -3.02 -1.76 -3.02 -2.41 -3.28 -1.63 -2.63 -1.39 0.63 -1 -2.65 -0.76
--2.15 -0.5 S
-745.96 1635.05 0.89 -2.65 -3.02 -1.62 1.13 -1.52 3.14 0 2.52 -0.24 0.63 -1.39 -0.89 -2.29
--1.26 -2.64 3.28 -0.37 0.63 2.64 2.13 2.13 1.39 2.41 1.25 3.15 1.89 2.88 2.89 2.02
--3.15 0.63 -2.88 -0.63 -3.78 -1.26 -3.52 -2.12 -3.28 0.87 S
-778.43 1629.12 -2.64 -2.25 1.52 -1.52 2.13 -0.23 S
-779.43 1625.11 2.78 1 1.36 1.76 -1 1.78 -4.14 -0.52 S
-797.55 1658.36 -2.65 -2.25 -3.02 -2.15 -2.39 -2.15 -1.52 -3.14 0.63 -2.15 0.13 -3.38 1 -1.26
--1.63 -3.4 1.63 -0.76 3.78 0.13 -2.13 -2.02 -1.65 -3.91 -4.27 -1.52 3.02 -0.63 -2.39 -2.64
--0.63 -2.89 -2.63 -2.14 -2.02 -1.89 -2.65 -0.13 -3.28 -0.24 -2.76 0.24 -2.02 -3.14 -3.02 0.5
--1.52 2.28 -0.5 3.02 -2.12 -0.76 -1.02 0.76 -2.88 -0.76 -1.89 -2.38 1.63 -2.65 2.28 -0.37
-0.74 -2.15 -0.24 -2.65 0.13 -2.13 -0.26 -2.28 -2.39 -1.52 -0.76 -2.63 0.13 -2.02 0.63 -2.28
--0.89 -1.52 0.13 -2.52 0.5 -2.25 1.26 -1.89 2.02 1.63 S
-762.07 1592.34 0.63 2.52 0.89 3.04 0.74 2.52 1.52 2.26 0.37 -2.88 -0.37 -2.78 0 -3.02
-2.02 -2.02 3.78 2.25 0.99 2.78 2.39 2.15 0.76 2.25 0.75 3.28 1.76 2.78 4.01 2.02
--0.37 -4.3 -2.39 -3.02 0 -3.02 3.02 1.49 2.65 -0.99 2.52 1.25 4.02 1.39 0.5 2.39
-0.39 2.52 0.24 2.78 1.02 2.78 -2.02 2.13 0.76 3.28 2.75 1.78 2.52 -1.15 1.02 2.91
-2.76 0.87 1.89 2.78 0.5 2.91 2.15 3.78 0.38 2.14 -0.76 2.26 3.04 1.52 1.75 1.26
--1.52 1.63 0.49 1.88 0 1.52 -2.75 0.63 -0.63 1.52 -2.52 0.63 3.38 0.63 2.65 2.02
-3.02 0.63 1.39 1.13 S
-814.15 1651.43 -1 1.39 -2.78 1 -3.28 0.76 -3.25 -1.02 -2.78 -0.74 -2.52 -1.26 S
-798.54 1651.56 1.76 2 2.64 1.02 2.78 0.89 2.89 0.24 2.02 -0.13 2.39 -1.39 -0.39 1.91
--0.5 1.89 -1.89 0.87 -3.02 0.75 -5.77 -0.25 -3.91 -1 S
-814.15 1649.79 -2.25 -0.37 -2.65 -1.39 -0.26 -2.02 1.52 -0.86 0.37 -2.28 2.02 0.5 2.26 1.52
-0.63 1.76 -0.37 1.88 -1.26 1.26 S
-818.92 1671.59 -1.25 -1.78 -1 -2.02 3.64 0.63 2.39 1.26 0 1.39 -3.78 0.52 S
-832.9 1672.85 -2.52 -0.13 -2.89 -1.65 0.63 -2.02 -1.64 -1.5 -2.75 -0.89 -2.91 -0.13 -3.38 -0.87
--1.26 -2.78 0 -2.26 0.13 -2.15 S
-816.3 1658.48 0.49 -2.14 2.52 -0.63 -1.02 -2.26 1.89 -1.65 2.91 0.26 2.52 0.76 0.87 2.52
--0.5 1.63 0.13 2.15 -2.15 1.63 0.39 2.52 1.63 2.02 1.39 -0.37 1.13 1.52 1.89 0.86
--0.13 1.89 1.76 1.65 0.89 2.02 S
-853.28 1673.85 -2.02 -1.13 -2.65 -0.89 -2.39 0.13 -3.14 -0.63 -2.39 -1.65 0.26 -2.52 2.65 -0.63
-3.25 -0.11 1.88 -0.89 2.65 0.5 0.5 1.65 2.9 0.11 1.63 0.89 0.37 1.76 2.02 1.15
-3.02 0.74 0 1.15 -3.15 -0.13 -2.39 0.76 -3.02 -0.26 S
-863.58 1671.59 -3.38 -0.89 -2.15 -1.52 0.39 -2.13 1.25 -1.25 0.5 -2.02 1.63 -1.88 -2.39 0.87
--1.75 1.89 -1.76 0.52 S
-855.92 1665.17 0.74 1.89 -3.75 0 -1.02 -1.52 -3.02 -0.63 -2.39 -1.02 -1.13 1.02 -4.17 0.63
--1.25 -2.28 -1.13 2.28 -2.76 -0.63 -1.02 -1.26 -1 1 -2.25 1.02 -2.78 -0.5 -0.24 -2.02
-0.11 -3.04 1.39 -0.86 -0.13 -1.52 1.52 -0.89 -2.02 -1.25 2.52 -1.5 3.15 -0.39 2.14 2.41
-2.75 -0.89 2.02 1 1.39 -1.76 3.51 0.39 3.28 1.13 3.52 0.38 2.52 -1.39 3.64 0
-2.89 0.13 3.14 -0.37 4.04 -0.26 1.5 0.63 2.38 -0.24 2.15 0 1.26 0.63 0 1.26
-0.89 1.37 -0.39 1.78 0.13 1.63 -0.76 1.39 -1.26 0.89 -0.13 1.39 -1.49 1.89 -2.65 0.63
--2.02 1.13 -1.5 0.76 S
-868.25 1669.57 -1.52 -0.26 -0.13 1.52 -3.02 0.76 S
-852.91 1677.5 -1.26 -1.63 3.02 1.13 -1.76 0.5 S
-849.5 1683.29 -1.52 -0.37 -1.5 -1.52 -1.89 0.76 -1.75 -0.76 -1.39 -1.89 -0.26 -1.26 -3.02 -1
-1.02 -1.12 0.24 -1.52 0.13 -1.39 2.02 -0.13 1.76 0.5 2.52 2.28 -2.89 -0.13 -2.64 0.26
-0.37 1 2.52 0.5 2.78 0.13 2.39 1.39 0.37 1.39 1.52 0.99 0.37 1.26 -1.13 0.63 S
-837.3 1674.21 -1.39 -1.99 -0.89 -2.15 1.52 -0.62 1.63 0.37 0.13 2.52 -1 1.88 S
-838.93 1682.92 -3.52 -0.37 -1.02 -1.39 2.52 0.63 2.28 0.13 -0.26 1 S
-831.25 1682.16 -3.02 -0.87 -2.39 -0.39 -3.14 -1.39 1.13 -1.62 S
-823.83 1677.89 -4.02 -1.39 -0.26 -2.78 3.41 -0.13 2.88 0.52 2.65 0.24 2.13 1.89 0.52 1.88
--1.76 0.63 -2.91 -0.11 2.78 1.26 2 1.13 0 1.13 S
-821.2 1681.54 -0.25 -1.39 2.52 0.89 -2.26 0.5 S
-805.6 1678.12 -2.15 -0.99 -2.75 -0.76 -0.13 -1.63 -3.02 -1.78 -3.52 -2 2.13 -1.28 1.13 -1.89
-4.03 0.52 3.78 1.26 1.36 2.13 3.14 -0.87 3.41 1.39 -1.26 1.13 0.63 1.89 -1 1.26
--2.15 0 -3.41 -1.65 0.52 2.14 -0.76 1.13 S
-845.98 1690.47 -0.5 -1.63 -1.26 -0.89 -0.39 -1.39 1.02 -0.74 2 1.63 0.5 2.15 -1.37 0.87 S
-844.73 1692.36 -1.76 -0.5 -0.12 -0.76 2.25 -0.11 -0.37 1.36 S
-842.58 1690.61 -2.26 0 -1.39 -1.52 1 -1.62 2.91 -0.37 0.37 0.99 -0.37 1.26 -0.26 1.26 S
-832.14 1698.68 -1.39 -1.02 1.39 -0.76 2.25 -0.63 -0.63 1.52 -1.62 0.89 S
-840.19 1702.82 -3.38 -0.5 -0.62 -1.39 -1.65 -1.26 1.39 -1.63 1.75 -0.89 -2.25 -1.39 1.89 -1.75
-2.52 0.13 1 -1.26 2.39 1 -1.26 1.13 1.26 1.64 -0.24 1.39 -0.89 1.5 -1.52 1.52
--0.37 1.76 S
-828.62 1697.03 -1.75 -1.63 -1.78 -1.15 1.25 -1.37 -2.75 -1.02 -0.63 1.65 -1.76 -0.52 -1.25 -1.49
-0.13 -1.39 1.24 -1.26 0.89 -1.52 -1.25 -2.52 0.13 -1.52 2.89 -0.11 2.65 -0.39 1.52 1.52
-2.63 1.75 3.54 0.5 -1.26 1.02 S
-833.03 1687.59 -1.89 0.87 -1.39 -0.87 -1.75 0.24 -2.52 -0.63 1.5 2.28 2.65 0.5 2.02 0.76
-2.52 1.63 1.26 1.39 -1.89 1.02 -2.52 1.25 -2.39 1 S
-805.73 1701.2 -2.64 -1.78 -1.89 0.63 -2.78 -1.36 -1.89 -2.52 -0.87 -2.28 -2.78 -2.14 -0.74 2.14
-1.13 2.39 0.76 2.02 -4.54 -0.37 -2.64 -2.15 -1.13 -2.38 -5.04 -1.26 -0.5 -2.41 -0.39 -2.88
-0.89 -2.65 0.5 -2.14 1.89 -1.63 -2.75 -1.76 -2.28 -2.52 0.5 -2.02 1.89 -1.39 2.64 1.13
-0.26 -1.76 3.28 0.24 1.5 2.91 2.26 2.52 2.91 1.76 3.88 0.13 3.91 1.25 2.89 0.64
-3.04 -0.87 2.39 -0.52 2.12 1.25 0.39 2.15 -3.15 0.89 S
-808.75 1684.44 -3.14 0.74 3.02 2.28 -0.37 1.76 2.13 1.39 -1.62 1.88 4.14 0.5 0.89 1.52
--1.25 1.39 -0.39 1.76 -0.74 1.52 -1.89 0.13 -1.02 1.37 -2.76 0.52 S
-815.15 1709.63 -4.15 -1.52 -4.54 -0.63 0.14 -2.15 -0.5 -1.76 2.38 -1.62 3.91 -1.02 1 -2.15
-0.89 -2 1 -2.02 3.14 1.75 3.52 1 1.52 2.28 3.02 1.89 -0.24 2.14 0.63 2.26
--4.3 -0.14 -3.01 0.89 -2.39 1.52 -2.02 1.25 S
-995.45 1807.88 -2.65 2.78 S
-965 1821.75 -2.15 0.89 -2.52 0 2.65 -0.89 2.02 0 S
-911.79 1827.67 -2.52 0.37 1.37 0.76 S
-903.73 1828.17 -3.41 -0.5 2.64 -0.39 0.76 0.89 S
-891.78 1825.91 -2.89 -0.52 S
-888.89 1825.39 -0.63 -0.87 S
-860.44 1819.36 -3.64 -2.28 -1.39 -0.76 0.52 -0.87 2.52 0.87 1.99 3.04 S
-853.64 1815.95 -3.25 -1.39 -2.52 -1.26 0.74 -0.89 3.91 0.89 -0.76 1 1.89 1.65 S
-891.38 1784.07 -0.5 1.26 -3.64 -0.73 -4.02 0.63 -3.27 -1.52 3.91 0.37 2.88 -0.62 4.64 0.63 S
-867.99 1793.64 -3.02 0.39 -3.02 -0.39 -2.26 -1.13 0.63 -0.87 2.52 0.37 2.63 0.76 2.52 0.87 S
-806.23 1785.72 -5.16 -0.26 -1.5 -1.76 0.11 -1.39 -2.52 -2.02 2.52 -0.24 2.29 0.74 -2.29 -2.25
-2.65 0.13 1.39 2.13 1.13 2.02 1.39 2.91 S
-715.78 1736.83 -3.91 -0.24 -2.89 -1.52 -3.91 -0.87 -3.78 -1.52 -4.77 -2.78 4.02 1.25 S
-700.54 1731.16 2.91 1.65 1.76 -0.39 4.01 1.15 2.52 -0.89 1.65 1.89 2.39 2.26 S
-681.42 1720.21 -4.64 -2.39 -3.14 -2.52 -3.02 -2.65 -1.52 0 -2.39 -2.28 -2.52 -1.75 -1 -1.76
--1.65 -0.37 -3.14 -3.17 -2.12 -2.26 0.24 -1.52 3.78 2.52 4.03 3.15 4.02 2.64 4.27 2.41
-2.65 2.76 3.02 3.28 3.28 2.78 -0.13 1.13 S
-845.98 1652.43 -1.13 -1.89 1 -1.12 -1.89 -1.13 -0.36 -2.02 -1.65 1.13 -2.02 0.5 -0.87 -1.5
--0.13 -1.89 -1.89 0.11 -0.76 -1.76 0.13 -2.39 2.14 -0.5 1.76 -1.65 1.5 -1.52 -0.5 -2.62
-0.76 -2.02 -1.76 -1.26 -1.02 -1.88 -1.37 -2.65 -2.52 -1.89 -1.26 -2.28 -1.76 -1.75 S
-832.4 1620.45 -3.4 -1.89 -1.39 -2.02 -2.89 -1.52 -0.62 -1.49 1.63 -1.29 2.52 0.63 -2 -2.88
-0.87 -1.89 -1.76 -2.39 -0.89 2.89 -1.89 1.52 -3.25 -1.89 -3.02 -2.02 -0.13 -2.78 3.15 -1
-3.38 0.87 -1.75 -2.89 -3.78 -2.91 -2.52 1.65 -3.15 -0.76 -3.25 -2.15 -2.78 -2.26 -1.75 -2.52
--2.25 -2.15 -0.26 -3.4 -1.76 -3.02 -2.52 -2.65 -0.13 -2.25 -1.63 -2.02 -1.12 -4.54 -0.89 -1.78
--1.13 -3.38 -0.89 -2.91 0 -4.04 2.78 -2 1.63 -2.02 -0.13 -2.65 1.89 -3.14 2.28 0.11
-2.75 1.91 1.89 2.39 2.25 2.15 2.91 1.75 1.39 3.64 3.25 0.63 3.41 1.65 2.25 2.12
-1.89 2.29 1 3.77 S
-822.57 1571.94 1.89 -1.39 2.15 1.65 3.14 -0.26 3.15 -1.39 4.02 0.5 2.9 0.76 2.89 1.02
-2.25 1.63 2.14 1.63 2.89 1.52 2.52 0.63 2.78 -0.87 3.26 0.37 3.04 0 3.12 0.5
-2.65 0.63 2.91 1.13 2.89 1.15 2.02 1.39 -2.28 1 -2 1.89 -3.15 -0.63 0.63 1.25
-2.76 0.63 0.63 2.64 2.26 0.26 -0.24 -1.78 -0.5 -2.12 S
-873.29 1585.68 1.5 -1.26 2.65 -0.13 1.13 2.39 0.89 2.02 -0.76 2.39 -1.12 2.14 -0.89 2.02
-1.76 -1.52 1.89 -1.62 1.13 1.5 0.63 2.52 -1.36 1.15 1.76 0.63 1.39 0.5 2.25 -0.13
-0.76 1.76 -1.65 1.25 4.27 0.39 1.39 1.89 -1.99 0.37 S
-888.89 1603.93 2.13 2.41 1 2.38 0.13 2.65 -2.02 1 0.89 1.64 2.02 0.88 2.39 -1.37
-1 1.49 0 2.65 -0.37 1.75 1.63 2.28 0.39 2.02 1.76 1.25 1.25 1.76 1.89 1.89
-2.13 1.89 2.15 1.39 3.38 2.28 -1 1.89 -2.64 1.13 -2.25 -1.26 -1 0.76 -1.78 -0.89
--2.13 -0.75 -2.65 -0.13 2.25 1.78 2.15 0.74 1 0.63 0.26 1.39 -1.76 0.25 -0.75 -1.25
--1.63 0 1.13 1.75 -3.78 1.26 1.89 0.39 2.02 -0.89 3.15 -0.26 2.25 0.63 -0.62 1.65
--1.52 1 0.13 1.39 -0.87 1.89 -2.64 1.13 -2.65 1.52 -3.02 0.13 -3.64 0.63 -3.14 -0.37
--2.39 -1.28 -1.76 1.65 S
-883.22 1650.67 -2.78 -1.39 -0.13 2.65 -3.88 1.63 -3.28 0.52 -1.52 -1.39 -2 -0.49 -0.63 1.25
--2.15 0 -3.28 0.11 -3.14 -0.5 1.39 -1.89 -1.63 -1.26 -3.91 -0.75 -2.75 1.89 -2.52 0.52
--2.15 1.26 -2.89 -0.39 S
-861.59 1560.59 1.63 -0.87 2.26 0.37 1.26 -1.13 -2.39 -1.39 -3.52 -0.99 3.39 -0.76 0.5 -2.91
--2.62 -1.76 4.41 -0.89 2.25 -1.89 2.89 -1.37 3.4 1.26 2.52 0 2.88 1.37 3.78 0.76
-2.78 2.28 0.63 3.02 -2.14 1.65 0.5 3.02 -2.26 -0.13 -1.02 1.52 -1.89 -1.39 -2.13 -0.63
--1.39 1.13 -2.52 0 -1.39 -1 -1 1.5 -1 -2.52 -3.02 -0.24 0.87 2.88 -1.13 2.15 S
-868.12 1563.63 -1.52 0.87 -0.5 -1.26 -1.63 0.26 -0.89 -1.63 -1.99 -1.28 S
-903.73 1581.9 2.25 1.5 S
-892.27 1607.07 -0.76 -1.89 1.52 0 -0.76 1.89 S
-975.67 1191 -0.37 -2.91 -2.89 -1.88 1.5 -2.75 1.02 -2.78 1.89 -2.26 1.89 -2.64 2.89 -1.79
-2.02 -1.75 3.77 -3.52 1.5 -2.28 2.02 -2.26 1.39 -2.15 0 -2.39 0.88 -1.25 0.63 -2.41
-1.39 -1.75 1.39 -2.65 0.5 -2.78 1.39 -2.26 1 -2.65 -2.39 -2.91 0.89 -1.37 0.87 -2.65
-1.52 -2.28 1.37 -1.76 0.52 -3.15 -0.63 -3.27 -1.02 -2.29 -1.37 -2.38 -2.4 -1.52 -2 -2.26
--1.02 -3.28 -1 -3.28 -1.02 -2.78 -0.61 -2.62 -1.52 -2.78 S
-989.65 1103.32 0 -2.78 -0.5 -2.65 -0.13 -2.25 0.38 -2.78 1.25 -3.02 1.89 -1.78 1.39 -2.13
-1.26 -2.65 1.75 -2.64 0.76 -3.02 1.76 -2.15 0.89 -2.28 2.13 -2.13 0.76 -2.15 -0.5 -2.25
-0.24 -3.04 -0.24 -2.64 0.37 -2.26 1.13 -3.02 -0.11 -2.64 0.24 -2.15 0.76 -2.64 0.63 -3.02
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-1 -2.14 1.63 -2.13 1.39 -2.91 0 -3.01 -1.5 -1.39 -1.26 0 1.76 -3.02 0.63 -2.02
--0.39 -2.14 1.89 0.89 1.89 -1.65 1.89 -1.63 3.02 0.13 1.89 1.26 3.14 0.63 3.41 0.13
-1.89 1.26 3.15 0.63 S
-1040.61 1009.85 2.88 -0.39 2.39 1.02 2.78 -0.76 2.52 -0.39 1.89 1.39 3.38 0.26 1.65 1.39
-2.89 0.13 2.64 0.5 2.52 1.89 3.25 1.89 2.52 1.39 2.02 1.88 S
-1073.94 1020.05 2.64 2.39 2 1.89 2.52 1.89 2.64 2.28 1.65 2.39 1.87 2.78 2.15 2.38
-1.63 2.28 3.02 2.13 2.41 1.52 1.37 2.78 1.39 3.25 1.39 2.78 0.37 2.28 0.26 1.89
--1.63 0.76 2.26 3.28 2.88 1.26 1.89 0.99 3.65 1.63 2.91 1.28 1.89 1.5 1.76 2.91
-0 2.76 0.76 2.41 0.5 3.27 -0.63 2.26 -0.39 3.64 -0.5 3.28 -1.63 1.65 0.76 2.88
-2.52 2.02 1.87 1.65 2.02 2.65 2.39 1.13 S
-1124.5 1098.16 2.52 3.14 2.02 2.52 2.02 2.64 2.76 1.39 2.41 1.13 3.64 1 1.99 2.15
-2.91 2.78 1.88 2.14 2 2.76 1.52 2.52 0.63 3.04 -0.63 3.28 0.13 2.89 -0.63 3.28
-0.63 3.53 0.13 2.39 -0.39 2.89 0.5 3.04 0.13 2.89 -1.75 1.65 -1.76 1.13 -0.76 2.78
--1.39 3.28 -0.37 3.78 0 3.38 1.39 3.17 -2.28 2.63 -2.25 2.54 0.89 3.02 0.74 3.14
-1.26 3.15 1.39 2.64 1.63 3.78 1.65 3.78 -0.12 3.41 2.25 0 2.15 2.91 2.12 2.39
-1.16 3.28 1.62 2.26 1.63 3.41 2.52 3.02 1.13 2.78 2.02 2.52 2.15 1.89 2.02 3.02
-1.87 2.54 2.52 1.63 S
-1174.07 1228.41 4.04 5.04 1.5 2.91 1.89 3.14 1.39 2.39 1.89 3.02 1.02 2.91 0.87 3.28
-1.39 2.52 1.89 2.65 0.23 3.78 0.52 2.78 0.74 3.41 0.89 2.89 0.26 3.27 S
-1192.58 1272.37 1 2.26 0.75 3.04 1 3.52 -0.62 3.41 0.76 3.02 -0.37 3.54 -0.52 4.67
--3.14 0.11 -1.37 -3.15 -2.78 -1.89 -2.65 -1.88 -2.52 -0.24 -2.26 -1.79 -2.89 -0.87 -2.64 -2.9
--2.39 -1.14 -3.02 -0.36 -2.14 -2.15 -2.39 -1.75 -2.65 -0.13 -1.89 1 -2.26 2.02 -2.02 1.65
--1.89 1 2.28 2.15 -1.39 2.75 -2.64 1.78 -2.52 2.02 -2.13 2 -3.02 1.78 -2.65 2.39
--2.78 0.26 -3.25 0.73 S
-1135.59 1299.2 -1.78 2.65 -1.76 0 -1.76 2.15 -1 2.88 -1.12 3.28 -1.89 2.54 -1.78 2.13
--3.02 1.89 -2.76 0.76 -2.02 3.14 -0.89 2.28 -1.13 3.28 -0.24 3.02 -0.52 1.89 -2.13 2.02
--0.76 3.28 -1.89 0.63 -2.38 1 -1.89 1.02 -1.89 2.52 -0.87 1.88 -0.26 2.39 -2.02 1.52
--1.89 2.64 -1.76 2.13 -1.88 2.54 -1.5 2.25 -2.28 2.39 -0.87 2.28 -1.78 1.63 -1 2.28
--2.02 1.5 -2.12 2.02 -1.76 2.15 -1.15 2.25 -1.76 2.02 1.02 1.26 1.36 -2.13 1.89 -2.65
-1.65 -1.52 1.26 -1.76 2.13 -1.52 2.39 -1.39 0.89 1.26 -0.63 2.28 0.26 3.64 0.63 3.67
-0.74 -2.78 0 -3.02 S
-1091.67 1370.77 0.13 -3.04 2.26 0.5 2.14 -1.99 1.89 -2.02 2.25 -2.41 2.39 -2.52 2.02 -1.5
-2.39 -2.52 1.52 -2.64 2.02 -2.52 2.63 -0.76 2.52 -1.39 2.4 -2.52 1.87 -2.52 1.15 -2.78
-0.11 -2.02 1.02 -2.38 S
-1122.37 1335.75 1.26 -3.15 2.02 -1.65 1.26 -1.63 3.52 -0.13 2.64 -1.89 1.89 -2.52 1.87 -2.65
-1.89 -2.52 1.78 -2.14 1.99 -1 2.29 -2.41 1.88 -2.64 1 -2.39 0.13 -2.52 1 -2.78
-1.65 -3.28 1.37 -3.14 1.26 -1.26 0.13 -3.02 2.26 -2.52 2.15 0.13 2.39 1.13 2.52 1.13
-2.25 1.75 0.76 2.28 2.15 0.63 2.52 0.26 2.38 1.13 1.39 2.02 1.5 2.64 2.39 0.74 S
-1177.84 1304.36 2.28 1.78 1 3.02 2.14 2.26 2.52 2.02 2.13 1.78 2.15 1.76 2.13 1.89
-2.02 1.76 -0.5 2.02 0.24 2.28 2.02 2.39 2.02 1.89 1.89 2.39 2.13 1.39 2.02 0.26
-1.52 2.26 -0.13 3.28 1.88 1.88 1.76 1.26 0.76 1.52 -0.13 3.28 0.89 2.13 1.76 1.28
-1.5 1.89 -1.63 2.13 -0.63 3.15 0.26 3.03 1.75 0.76 0.24 2.89 0.26 2.52 0.87 2.28
--0.11 3.38 0 3.54 -2.39 0.63 -2.41 1.76 -2 1.89 -2.78 -0.13 -2.38 -0.5 -2.65 0.5
--2.52 1.02 -2.76 1.63 -1.26 3.41 -1.26 2.91 -0.26 1.63 -1.26 0 0.13 -2.26 -1.13 -2.28
--1.26 -5.03 S
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--1.26 1.26 -1.89 -0.74 0.37 3.52 -0.63 3.02 -1.49 2.78 -1.76 1.39 -0.89 -0.89 0.5 -2.52
--0.5 -3.02 -1.25 1.25 -2.39 1.76 -0.5 2.52 S
-1165.28 1379.95 -1.65 2.14 -2.52 1.26 -2.62 1.63 -2.78 1.65 -2.02 2.02 -2.12 2.52 -1.76 2.52
--2.15 0.26 2.02 1.89 -1.88 2.02 2.02 0.74 0.24 3.41 2.02 -0.76 2.02 -0.87 1.26 1.63
-2.25 -1.39 2.78 -2.64 2.89 -2.13 1.89 -2.65 2.02 -1.88 3.14 0.24 2.25 -0.74 2.76 -1.65
-2.41 0.5 2.13 -1.39 1.89 1.39 2.39 -0.63 1.75 2.52 1.39 1.78 S
-1187.29 1393.32 1.63 2 2.02 0.89 2.15 -1.25 1.49 -2.26 1.89 -2.54 2.91 0.89 2.63 0.63
-2.78 0.26 2.26 0.5 2.02 0.99 2.64 0.76 1.89 0.5 2.76 0.89 2.15 1.76 1.76 1.52
-2.25 1.26 0.89 1.76 2.13 0 1.78 0.52 1.75 1.49 1.39 1.52 1.63 1.63 2.13 0.63
-1.89 -1.37 2.02 -0.65 1.76 -2.13 1.52 -2.15 2.39 0.13 2.25 -0.5 2.52 -1.65 2.78 -0.76
-2.13 1.39 1.78 2.52 0.74 -3.39 -1.36 -2.28 -2.28 -1.52 2.39 -2.38 2.14 -1.14 2.75 -1.52
-2.52 -0.24 2.28 1.39 1.5 2.25 0.5 3.15 -1.26 3.64 -0.61 3.04 1.13 0.13 1.13 -3.28
-1.5 -2.28 2.15 -1.89 S
-1270.45 1396.2 1.25 -3.77 1.13 -3.28 1.89 -2.65 1.39 -1.13 0.24 -2.52 2.15 -3.14 2.15 -3.28
-1.5 -2.91 1.76 -3.38 1.76 -2.28 2.15 -2.52 2.52 -2.28 2.52 -2.26 1.39 -3.02 1.89 -2.78
-1.75 -2.91 1.89 -3.28 1.89 -2 2.26 -1.89 1.76 -2.15 1.75 -2.78 S
-1307.42 1340.02 1.65 -2.88 1.89 -3.41 1.75 -3.54 2.13 -1.89 2.02 -1.39 2.02 -0.11 1.13 2.75
--0.37 4.43 1.13 2.75 1.5 1.65 -1 3.28 0.26 4.14 1.89 1.39 -1.26 3.91 -1.26 2.52
--1.15 3.28 0 3.54 -0.24 4.02 -1.13 4.03 -1.78 3.54 -1.76 3.64 -1.89 3.41 -0.74 3.02
--0.12 3.41 2.25 1.13 -0.63 3.14 1.02 1.52 S
-1314.73 1391.3 1.5 1.88 0.13 2.39 -0.89 2.91 0.39 1.88 0.64 2.89 -0.14 3.54 0.38 2.64
-0.75 2.39 0.37 3.41 -0.24 3.64 -0.39 2.91 0.25 3.38 1 1.89 1.02 2.65 -0.5 3.67
--0.63 3.38 -1.39 1.89 -0.76 2.65 0.89 2.64 0.5 2.39 -0.76 2.64 2.65 -3.14 0.87 1.89
-1.02 2.28 1.13 2.13 1 2.28 -0.37 3.28 -0.13 2.64 0 3.78 2.52 -1.39 2.02 -2.02
-1.89 -2.25 2.02 -2.02 2.5 -1.39 2.65 -1.26 1.89 -1.13 0.89 1.13 2.25 -1.76 0.5 -2.28
-2.28 -1.75 0.87 1.25 2.28 -2.78 2.5 -3.14 2.41 -3.52 1.63 -4.54 1.26 -3.91 2.26 0.11
-1.13 0.65 1.15 1.5 S
-1359.89 1433.62 -0.26 3.41 0.13 3.28 0.37 3.52 -0.75 2.91 1.39 0.13 2.38 -1.65 2.28 -2.65
-2 -3.14 2.4 -3.64 2.13 -2.78 2.39 -3.41 2.9 -2.88 2.39 -3.54 1.25 -5.04 2.26 -2.65
-1.39 -3.02 0.24 -3.28 1.65 -3.64 1.76 -4.3 1 -5.28 1.39 -3.67 1.65 -2.52 0.24 2.15 S
-1392.47 1391.93 2.38 -1.65 2.39 -2.52 1.78 -1.26 1.89 -1.39 1.24 -1.39 1.02 -2.12 1.13 -3.15
-1.76 -4.29 1.52 -1.76 1 -4.17 2.15 -2.75 2.25 -1.89 1.39 -3.66 2.25 -0.87 1.65 -1.52
-2.13 -0.25 1.76 -0.63 1.52 -0.87 2.25 2.65 -1.89 4.14 -2.25 3.67 -1.76 1.49 -1.15 4.04
--1.23 4.04 -1.26 4.01 S
-1416.38 1379.82 -1.39 4.04 -2.28 2.64 -1.99 1.02 -2.02 1 -2.14 1.13 -2 1.89 -1.89 -1.39
--1.64 0.65 -2.13 3.77 -1.89 3.15 -1.89 1.25 -2.28 4.67 -1.13 -2.41 -1.89 3.04 -1.75 4.27
--1.39 4.79 -0.5 3.39 -1.13 4.29 -0.87 3.52 -2.28 4.8 -1.89 4.54 0.5 2.75 1.78 0.76
-2 -4.14 1.52 1.39 1 1.63 2.52 -1.39 1.39 0.13 1.76 -1.39 1.88 -2.39 2.02 -2.02
-2.12 -0.89 1.39 2.41 1.76 -1.52 1.76 0.76 1.26 -4.41 1.65 -3.78 1.75 -2.54 0 4.29
--0.26 4.14 0.89 2.78 -0.63 4.54 -2.15 4.54 1.26 2.39 0 3.66 -0.11 3.78 -0.12 3.64
-0 4.04 -1.02 3.27 S
-1405.92 1460.33 -1.63 3.15 -2.52 5.3 -1.75 3.02 -2.15 3.64 -2.12 3.28 -2.52 2.78 -2.78 3.41
--2.38 1 -2.39 1.39 -2.13 0.5 -2.65 0.63 -2.38 1.39 -2.52 1.02 -1.65 1.76 -2.13 0.5
--3.28 2.39 -1.89 4.04 -1.75 3.41 -0.76 4.41 -1.63 3.78 -1.02 3.91 -0.5 3.78 -0.63 3.41
--0.24 3.4 0.5 2.26 S
-1361.02 1527.84 1.76 0.26 0.36 1.5 2.02 -3.02 1.26 -1.12 2.25 -1.89 0.39 1.52 -0.5 2.25
--2.39 1.52 -1.52 2.89 -0.37 3.41 0.11 3.15 -0.87 3.91 -0.13 2.88 -0.5 3.54 -2.64 3.41
-2.02 0 -2.65 3.91 2.65 -0.13 -2.15 4.14 0.13 2.54 -0.26 2.89 -0.37 3.01 -1.25 4.04 S
-1358.38 1572.44 -1.89 4.54 -1.5 3.54 -1.88 4.02 -1.52 3.17 -2.02 1.89 -0.11 2.52 -2.52 3.28
--1.65 3.02 -2.02 3.14 -2.76 3.54 -2.02 2.25 -2.52 1.76 0.25 1.26 -2.28 3.41 -2.75 3.41
--2.78 3.4 -2.39 3.02 -0.24 1.75 -1.76 2.02 -1.52 0.75 -3.28 3.28 -0.24 1.26 -3.91 3.14
--1.63 1.52 -0.13 -1.65 -0.75 -1 1.13 -3.28 -0.76 -0.89 -1 2.91 -1.89 2.38 -1.39 2.39
--1 2.52 -2.02 1.02 -2.13 -1.02 -0.63 2.78 -2.52 1.02 -1.76 -0.65 -0.63 -0.87 -2.65 1.26
--2.64 1 -2.39 0.89 -3.15 1.25 -0.99 -1.75 -1.15 -1.65 -2.89 2.78 -2.52 2.52 -2.75 3.54
--2.15 3.28 -2.88 2.12 S
-1271.83 1658.22 -2.02 3.67 -2.38 3.14 0.75 1 -3.77 2.78 0.13 -1.89 0.74 -2.28 0 -1.62
--1.26 -0.63 1.76 -2.78 2.02 -2.38 1.89 -2.02 0.5 -1.89 -1.26 -0.89 -2.62 1.13 -1.15 -1.26
--1.24 -0.87 -1.89 -0.39 -2.28 1.64 -2.52 2.52 0.76 1.25 -1.26 2.78 -1.89 1.89 -2.39 1.89
--2.25 2.88 -1.78 2.65 -3.26 3.04 -2.91 2.76 S
-1242.25 1674.35 -0.37 2.64 2.26 0.13 3.28 -2.65 2.39 -2.52 1.89 -1.52 1.75 0.39 3.41 -3.54
--1 2.02 -2.41 3.02 -2.88 2.52 -1.89 3.04 -2.02 2.64 -1.5 2.75 0 2.15 -0.13 1.65
-0.5 0.99 3.78 -2.52 3.14 -2.02 3.41 -2.39 1.63 1.39 -1.89 3.65 S
-1255.6 1686.2 1.13 1.39 2.52 -0.5 1.75 -3.04 3.41 -0.24 3.38 -0.76 3.64 -3.41 3.41 -1.63
-2.88 -0.52 -3.38 4.04 -2.39 3.4 -2.28 3.91 -3.02 3.64 -3.38 2.52 -3.15 1.78 -3.41 1.37
--3.28 1.02 -3.02 0.63 -2.02 -0.39 -1.5 -0.63 -2.26 0 -1.39 -1.13 -0.5 -1.5 -2.64 1.63
--1.39 -0.13 -1.76 2.39 -2.02 2.28 -2.89 2.78 -3.51 3.02 -2.15 2.15 -3.41 1.13 -1.5 0.13
--4.66 3.15 -2.62 2.78 -2.78 1.26 -0.87 1.36 -3.77 2.15 -2.39 1.39 -1.65 2.39 2.26 -0.5
--0.5 2.78 -3.14 3.02 -4.02 2.78 -3.77 3.02 -5.04 2.64 -3.28 1.13 -4.91 2.91 -5.27 2.75
--4.78 2.41 -4.17 1.76 S
-1166.14 1750.7 -3.91 1.52 -4.51 1 -4.54 1.89 -4.9 1.89 -5.54 2.28 -3.77 0.5 -3.15 0.37
--3.64 -0.11 -2.78 -0.39 -3.26 0.13 -3.54 0.5 -3.64 0.76 -2.88 0.63 -0.63 -0.89 -2.38 -0.37
--3.41 0.5 0.52 -1.89 0.11 -1.52 -1.26 -0.37 1.15 -2.02 2.13 -1.89 4.77 -1.39 3.91 -2.52
--3.14 0.89 -2.52 -0.26 2.28 -1.63 3.75 -1.02 -2.63 -0.13 -2.52 -0.11 S
-1116.21 1747.05 2.65 -2.15 0.73 -1.89 -1.37 -0.26 -3.53 1.89 -4.41 1.65 -4.02 1.63 -4.41 1.52
--4.67 1 -3.52 1.02 -3.91 1.25 -3.14 1.13 -2.89 0.5 -3.14 0.52 -3.39 1.13 -2.78 0.37
--3.38 1.02 -3.54 2.02 -3.02 2.13 -2.89 1.89 S
-1061.61 1763.41 -0.26 1.02 -3.14 0.63 -2.26 2.25 -2.88 1.26 -1.76 1.39 -1.15 -0.13 -1.49 -0.37
--2.15 0.76 -1.39 1.63 -2 1.39 -2.02 0.63 -0.13 1.26 3.28 -0.5 0.24 1 -2.39 1.26
--4.14 1.15 -2.26 0.37 -2.15 1.39 -4.77 1.63 0.24 -1.13 2.14 -1.25 -3.41 -0.76 -3.52 -0.37
--4.01 0.24 -3.65 -0.24 -3.67 -0.39 -4.27 0.89 -3.52 0.89 -1.89 1.26 -3.52 0.5 3.64 1.26
-0.88 1.13 0.13 1.25 -4.27 0 -3.65 -0.24 -3.14 -0.39 -2.75 0.39 -1.26 -1.25 -2.41 -1.15
--4.78 0.63 -0.75 0.76 3.14 0.25 2.02 1.52 2.15 1.75 2 0.76 3.65 -0.39 3.77 0
-2.39 0.63 3.9 0.39 S
-1004.36 1788.37 4.78 0.24 3.14 0.63 4.16 0.13 4.64 0.13 4.04 -0.5 2.76 -1.16 0.63 1.16
-3.02 0.5 3.53 -0.76 6.29 1.52 2.76 1.26 1.52 1.13 1.36 1.39 1.02 1.25 1.76 1.63
-2.13 1.52 0.76 1.89 1.76 1.25 1.89 0.89 0.52 1.13 -4.66 0.76 -4.78 0.24 -4.91 -0.37
--3.02 -1 -4.29 0.24 -3.64 1.39 -1.13 -1.12 -2.26 -1.13 -3.64 -0.13 -4.17 0.87 S
-1020.33 1803.34 -2.12 1.02 -2.89 -0.12 0.63 -1.76 -1.25 -1.52 -2.91 -0.63 -2.89 0.13 -1.13 1.39
--2.52 0 -0.75 -1.65 1.39 -1.13 -1.26 -1.13 -3.54 -0.62 1.89 -1.52 2.65 -0.13 -0.63 -1.5
--3.02 -0.62 -3.77 -0.63 S
-998.2 1792.91 -2.25 -1.02 -1.76 -1.13 -3.91 0.37 -2.02 1.15 -3.28 -0.52 -3.76 0.26 1.37 1.89
--3.77 -0.75 -3.39 -0.24 -3.41 0 -3.64 0.99 -2.39 1.39 -1.5 1.39 -2.28 -1.52 -3.9 -0.37
--3.88 -0.75 -3.54 -0.76 -3.52 -0.89 -3.02 -0.11 -3.41 -0.89 -3.75 -0.37 -3.14 -0.89 -4.67 0.26
--3.14 0.99 -2.75 -1.52 1.63 -1.26 1.52 -2.02 0.87 -1.89 0.76 -1.25 3.02 -0.13 -0.13 -1.5
--4.14 0.37 -3.27 -0.87 -1.5 -0.52 S
-922.22 1780.79 -1.13 -0.5 -1.52 -1.89 2.39 -1.26 -3.14 -1.26 -0.63 1.52 -1.13 1.63 -2.88 0.25
--2.28 -0.75 -3.52 0.37 -0.89 1.65 -2.89 0.76 -4.14 0.87 -3.78 0.39 -0.36 -1.78 S
-896.31 1780.79 -1.65 -1.36 0.63 -1.91 -3.77 -0.5 -1.12 -1.39 -2.13 -1.37 4.01 -1.02 3.28 -1.26
-4.91 -0.13 4.14 0.39 2.02 -1.52 2.76 -1.13 3.53 -1.13 3.78 -0.89 2.76 -1.26 2.78 -1.26 S
-922.22 1765.06 0.63 -0.39 3.15 -1 3.38 -0.76 3.41 -1.12 4.14 -0.26 3.52 -0.63 3.54 -0.76
-3.64 -0.74 0.87 2.26 -0.5 1.75 1.89 0.76 2.65 0 0.13 -1.39 2.52 -1.13 -0.39 -1.26
--2.52 0.37 -1.13 -0.87 2.89 -1.13 2.14 1 2.26 0.63 3.27 -1.39 4.14 -1.25 4.91 -0.89
-4.04 -1 2.26 -1.76 -2.52 -1.13 -0.5 -1.78 1.26 -1.5 2.88 -1.26 3.15 -1.39 3.77 -0.76
-2.39 -0.89 2.65 -0.76 S
-990.15 1744.64 -1.26 -1 0.76 -1.52 1.89 -0.87 0.37 -1.39 -1.76 -1.76 1.89 -1.65 3.15 -1.62
-1.75 -2.28 2.02 -1.63 2.02 -1.64 2.52 -2.13 0.86 1.37 2.28 -1.5 2 0.13 1.25 1.13
-1.26 1.5 2.28 -2 3.64 -2.28 0.37 -1.39 1.76 -0.86 2.28 -0.26 0.37 -1.52 -1 -1.89
-2.88 0.26 2.76 0.38 3.14 -0.5 0.26 -1.52 -1.26 -1.88 -2.14 -1.63 -3.52 0.37 -3.39 -0.37
--1.52 -2.28 0.89 -2.39 0.74 -2.89 1.78 -2.28 2.39 0.13 1.5 0.99 1.89 -1.62 1.26 -2.64
-0.26 -2.15 -2.91 -0.12 1.15 -1.76 -0.12 -1.89 1.25 -1.39 1.89 -1.5 -3.28 -1.26 S
-1026.75 1691.62 -2.64 0.63 0.26 -1.64 S
-1024.37 1690.61 1.39 -0.63 0.99 1.65 S
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-1.63 -1.78 0.37 -1.5 -3.02 1.13 -1.63 1.52 -3.54 1.76 -2.88 1.63 -3.65 1.78 -2.88 1.25
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-1.39 -2.54 1.89 -2 2 -1.65 2.28 -0.63 2.88 -0.13 0 -2.38 0.5 -2.15 S
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--3.14 -0.39 -2.26 -0.86 -0.63 -1.28 -2.02 -0.37 1.13 -1.52 2.91 0.75 0.63 -1.12 -2.02 -0.5
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--1.76 2.41 -2.52 1.39 S
-1059.09 1624.48 -2.02 1.89 -3.38 -0.13 -2.9 1.5 -3.39 2.02 S
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--1.26 1.13 -2.38 0.37 0.11 -1.76 2.02 -1.89 1.88 -1.89 2.78 -1.75 1.89 -2.02 0.63 -2.65
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-1.79 -1.39 -1.52 -0.5 -2.88 2.15 -0.52 -1.65 0.26 -2.52 S
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--1 -1.89 -0.26 -1.89 -0.89 -2.28 -0.87 -1.63 2.38 -2.65 -0.5 -2.02 -1.88 -1 -2.26 1
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--1.15 -2.15 -0.63 -2.26 2.41 -1.52 2.88 -1.89 -2.88 -0.76 -2.41 0 -2.88 0.36 -2.13 -0.23
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--1.12 2.02 -1.5 2.41 S
-1005.38 1570.18 -3.54 1.25 -2.52 0.63 -2.63 1.89 2.89 -0.89 3.02 0.13 2.88 -0.37 S
-1005.49 1572.83 2.28 0.24 2.39 0.5 2.75 0.13 2.28 1.52 1.26 2.15 0.24 2.13 -1.75 2.28
--2.13 1.63 -3.04 0.76 -2.75 0.26 -3.02 0.74 -3.15 0.76 -3.02 0.26 -3.02 -0.26 -3.04 -0.5
--1 1.52 -2.39 0.11 -1.13 -1.26 -2.65 -0.5 -3.27 0.89 2.64 0.36 1.26 2.28 -2.65 0.64
--2.62 0.49 -2.91 0 -0.37 -3.27 -1.52 1.89 -0.99 -2.14 -1.26 2.9 -1.26 -1.25 -0.26 -1.89
--2.39 0.75 -1.39 -1.64 -0.74 -2.39 -2.39 -1.52 -2.52 -0.5 -0.89 -2.78 -2.02 -1.26 0.5 -1.63
-1.39 -0.26 -1.5 -2.02 -0.63 1.65 S
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--0.49 -2.25 -0.5 -2.78 -1.89 -1.89 -1.15 -3.28 -1.13 -2.28 -1.26 -2.38 -1.75 1.25 -0.76 -2.39
--1.13 -1.75 -2.75 -0.63 -1.52 -2.28 -1.75 -1.89 -1.89 -1.89 1 -1.76 -1 -1.78 0.63 -2.13
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-2.64 -1.15 2.78 -0.24 2.39 1.49 1.37 1.89 2.02 2.41 1.52 0.13 0.75 1.89 1.63 -1.15
-1.39 -3.02 1.5 -2.52 S
-959.07 1515.75 1.52 -3.02 1.5 -2.52 2.41 -2.02 -0.52 -1.89 1.52 -2.15 0.26 -1.76 2.26 0.24
-1.89 0.26 S
-969.9 1502.91 -0.62 1.76 1.25 2.39 2.13 0.26 1.89 0.26 0.63 3.28 -0.24 3.15 0 2.38
--0.63 2.65 0 1.75 1.89 2.15 1.89 1.76 -1.26 0.63 1.37 1.64 0.26 1.37 -1.13 1.64
--2.52 1.39 -2.39 1.5 -0.76 2.15 -0.26 2.64 -0.5 2.65 0.5 1.52 1.02 2.89 1.5 2.02
-1.39 1.63 1.63 1.65 0.26 1.89 1.13 2.14 -2.12 0.88 0.63 1.89 -0.62 1.25 1 1.15
-0.37 1.89 2.02 0 1.52 0.37 1.49 0.89 2.65 -1.26 1.13 -2.52 -1.26 -1.26 -0.36 -2.78
--1.26 -2.64 S
-983.48 1551.91 -1.26 -3.02 -1.39 -2.65 -0.13 -2.78 1.02 -2.52 2.13 -2.39 -0.13 -2.78 0.63 -1.64
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-3.02 -1.52 1.63 0.89 2.28 -1.75 -3.28 0 -1.52 -2.28 -0.63 -1.63 -3.14 -0.76 -2.89 0.13
--2.52 -1.02 -2.12 -1 -1.52 -1.75 0.76 -2.15 1.5 -2.02 1.89 -0.13 1.02 -2.52 0.87 -2.64
--1 -1.63 -1.89 0 -1.62 1.63 -2.02 0.89 -2.15 -0.89 -0.24 -2.89 -0.5 -1.89 1 -3.04
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--2.52 -1.26 -1.89 -2.15 S
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--2.13 -0.76 -1.39 -1 -1.52 -1.52 S
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-2.02 1.15 -0.26 1.76 -1.87 -0.26 -0.26 1.89 0.37 2.28 -0.24 1.75 -2.02 -0.63 -1.13 -1.89
--2.28 -0.63 -1.26 -1.52 -0.24 -1.76 0.24 -2.64 0.52 -2.26 1.89 -1.25 0.37 -2.65 1.26 -1.78
--1 -1 1.37 -1.25 -1.37 -1.39 0 -1.89 -1.89 0.89 -2.38 -0.13 -1.02 -1.52 -3.14 -0.13
--2.02 -1 0.13 -2.28 1.65 -0.37 0 -1.39 -1.39 -1.39 -1.52 0.76 -0.24 2.78 S
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--2.15 -1 -0.5 -1.76 -0.23 -2.41 -1.65 -0.87 -1.89 -0.49 -1.5 -0.89 -0.63 -2.28 -2.28 0.52
--1.89 -0.52 -0.87 2.28 -2.28 0.13 1.26 -2.78 0.52 -3.28 -2.28 0 -2.52 -0.36 -1.26 1.88
--2.52 -0.39 -2 -0.87 -2.28 -0.39 0.13 -2.76 1.65 -1.02 1.87 0 2.28 -1.52 2.64 -0.37
-0.63 -1 1.5 -1.88 -0.37 -1.39 1 -1.39 2.02 -1.39 1 -2.26 -0.37 -3.28 -0.39 -3.16
--0.37 -2.26 -0.75 -3.28 -1.13 -1.39 -2.12 -0.5 -2.41 0.63 -3.38 0.49 -3.65 -0.87 -2.64 1.13
--3.15 0.5 -3.14 -0.26 S
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-0.11 -1.78 0.52 -2.89 -0.62 -2.28 -0.89 -2.76 -0.76 -3.17 S
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-2.64 0.24 2.25 -0.62 2.02 0.89 1.89 -0.13 2.14 -1.5 0.74 -1.39 1.26 -2.91 2.28 -1
-2.38 2.25 2.39 0.89 2.65 0.37 2.75 -0.11 2.64 0 2.65 -0.13 1.63 2.38 2.26 2.78
-2.28 0 0.76 2.26 1.5 1.89 2.64 1.79 -2.26 1.88 -0.39 2.39 1.52 2.25 2.13 2.78
-2.15 3.28 2.12 1.02 2.52 0.87 2.52 2.02 2.14 1.39 S
-935.8 1426.06 -0.5 3.28 -0.52 2.65 2.41 1.5 1.76 1.39 2.52 -0.75 2.75 -0.37 2.52 -1.26
-2.52 0.5 1.52 2.02 2.38 1.52 2.39 1 0.76 1.89 1.75 1.02 2.02 -0.26 1.5 -0.89
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--0.37 2.28 1.99 1.26 -0.37 2.39 -2.39 1.15 0.24 2.76 0.76 2.02 1.88 -0.76 2.29 -0.11
-0.73 -1.78 1.52 -0.24 S
-1002.11 1419.77 0.37 1.88 -2.62 2.02 -2.41 1.13 -2.39 1.13 -2.76 1.02 -2.28 0.73 0.76 1.89
--3.52 -0.37 -2.65 1 -2.25 1.25 -1.25 1.29 -0.76 2.25 -1.39 2.15 -2.25 1.25 S
-976.7 1438.41 -1.89 1.13 -2.02 1.63 -0.63 1.91 0.39 1.89 -1.15 1.26 0.13 1.89 1.65 0.14
-1.75 1.63 2 -0.26 -0.37 -1.36 0.63 -1.91 1.25 -1.26 1.13 1.02 0.13 1.89 2.88 -1.52
-0.76 -2.25 1.25 -1.26 0.38 -1.78 2.52 -1.13 1.39 -1.26 2.39 -0.13 3.54 -1.89 2.89 -2.02
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-1.5 -1.76 2.02 -2.52 2.28 -2.02 S
-1015.95 1413.21 3.38 0.13 3.15 0.87 1.89 -1.5 2.64 0 2.63 -1.52 -0.74 3.27 2.75 -0.5
--2.02 0.63 -0.87 1.75 -2.02 0.64 -1.75 1.13 -1.13 1.76 -1.89 1.52 -1.89 2.14 -0.5 3.28
-2.63 -1.89 2.15 0.37 0.37 1.52 -1.37 1.13 2.13 0.37 0.63 1.65 2.25 -0.13 1.65 0.89
-2.52 0 1.89 -1.65 1.89 0.89 -1.15 -2.15 0.26 -1.12 1.26 2.14 1.63 2.13 1.02 1.65
-2.89 1.13 2.78 0.63 2.88 -1.26 -1.89 -1 0.76 -1.28 -2.39 -0.5 -2.78 -0.63 -2.39 -0.63
--2.52 -0.5 -1.13 -2.15 0.13 -3.39 3.38 1.26 -0.24 -1.65 1.13 -3.14 1.13 -1.13 -0.89 -0.76
--1.89 1.13 0.14 -2.02 S
-1038.46 1416.73 2.39 -0.5 2.02 -0.5 0.13 -1.89 2.26 -1.02 -1 -2.13 2.25 0.37 2.15 0.5
--0.39 -1.5 2.52 0.5 3.53 -1.75 2.52 -0.39 2.76 2.14 0.13 2.52 2.65 0.13 3.64 -0.62
-1.63 -1.52 S
-1067.64 1411.07 2.38 -0.5 1.52 1.52 1.75 0.37 1.52 2.39 1.13 2.41 3.38 -0.63 1.39 0.38
-1.39 2.52 0.87 -1.26 -0.74 -2.39 1.37 -1.64 -0.11 -2.02 1.26 -3.77 1.23 -2.65 -0.61 -2.76
--0.13 -3.54 -0.13 -3.14 0 -3.02 0.26 -2.91 -0.76 -3.27 -0.89 -2.26 -3.28 -1.39 -2.52 -1.02
--1.99 1.02 -0.26 -2.02 -2.13 0.37 -0.13 2.02 -3.15 -0.24 -2.52 -1.02 -2.38 -2.02 -1.89 -1.89
--2.15 -1 S
-1061.35 1377.69 -3.02 0.88 -2.75 -0.5 -2.52 0.39 -2.15 0.63 -2.88 0 -2.78 -0.13 -2.63 -0.89
--1.65 2.15 -2.76 -0.5 -2.91 0.37 -2.75 0.13 -0.89 2.25 -2.88 0.52 -3.15 -0.13 -2.64 -0.76
--2.52 -1.39 -2.39 -2.78 -0.89 -2 1.15 -1.78 0.74 -2.26 -0.37 -2.52 -1.39 -1.65 -1.75 -1.12
--2.52 0.13 -2.65 1.63 -3.52 1.39 -4.01 0.5 -2.91 0.13 -2.62 1.13 -1.39 1.26 -0.39 2.91
--2.88 0.63 -2.89 1.13 -2.78 0.13 -3.64 0.13 -3.14 -0.25 -2.52 0.75 -2.88 1.26 -1 2.28
--1.89 -0.62 -2.02 0.73 -0.62 2.41 1.39 1.5 1.76 2.02 1 2.39 -0.63 2.28 -1.63 0.89
--1.13 3.14 1.37 1.13 S
-971.4 1397.59 0.89 2.39 -2.89 -1.62 -1.39 2.78 -2.26 0.24 -2.28 -0.63 -1.76 -1.52 -2.14 -0.62
--3.52 0.76 -1.89 -1 -3.38 0.76 -1.89 -1.52 -2.28 -0.5 -1.5 0.76 -2.78 0.5 -2.63 -0.13
--1.88 -0.5 -2.29 -0.13 -2.25 -0.89 S
-933.29 1396.7 -3.02 -0.63 -3.54 -0.36 -2.26 -1.52 -2.25 -1.75 -2.39 -0.5 -2.28 -0.5 -1.12 -1.78
--3.14 -1.39 -2.39 -0.5 -2.65 1.52 -2 -0.5 -3.04 0.11 -2 -0.37 -3.04 1.88 -1.13 1.89
--2.26 -0.24 -1.39 -2.78 -0.86 -2.38 -1.26 -2.29 -1.26 -2.25 -2.91 -1.65 -2.89 -0.89 -2.39 -1.25
--1.75 -2.26 -2.15 -1.76 -0.24 -1.78 -1.39 -2.39 -1.64 -1.26 -0.37 -4.66 1 -2.02 S
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--2.39 -2.15 -1.88 -2.26 -1.65 -2.14 -1.63 -3.67 -1.52 -2.25 -1.89 -1.26 -0.73 -2.78 -0.76 -2.76
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--1.13 -2.78 -1.13 -2.76 -0.39 -3.8 -1.89 -2.12 -1.63 -2.28 -2.39 -1.26 2.15 -1.62 1.13 -2.91
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-1.75 -2.39 1.26 -2.52 S
-841.95 1250.46 2.15 -1.65 2.25 -2.52 1.75 -2.52 0.26 -2.76 0.37 -2.41 0.89 -2.52 2.64 -3.02
-2.76 -1.52 2.78 -1.62 2.25 -2.41 3.65 -2.12 2.78 -3.04 2.25 -1.89 2.78 -2.02 3.26 -2.52
-2.9 -1 2.26 -0.63 2.88 1.76 3.41 0.39 2.39 1.89 S
-888.63 1218.34 3.28 0.24 3.25 0.5 2.41 0.39 2.89 0 4.28 -1.12 2.75 -0.39 3.28 -1.5
-2.38 1.37 2.91 0.89 2.38 0.5 2.39 1.39 3.28 1.89 3.78 0 1.36 1.89 3.27 0.89
-2.89 0.63 2.78 0 3.38 0.5 3.28 0 2.78 -0.87 2.89 -2.15 1.52 -3.78 1 -3.77
-3.28 -1.79 2.88 0.13 2.78 0.5 2.89 0.63 2.75 0.13 S
-967.62 1215.43 2.41 0.5 2.39 0.13 0.5 -2.78 2.39 -0.37 1.52 -2.25 1.89 -2.28 -0.89 -3.28
--0.37 -3.28 -0.89 -2.39 -1.39 -2.52 1.89 -0.76 -1.39 -2.39 0 -2.78 S
-993.79 1271.62 1.52 -1.76 1.13 -2.38 1.89 -1.26 0.63 -1.78 1.39 -1.39 2.13 1.65 2.65 1.13
-0.76 3.02 -2.65 -0.24 -3.28 0.13 -0.11 1.89 -1.52 1.89 -2.64 0.24 -1.89 -1.13 S
-1102.13 1191 0.99 -3.78 2.26 2.78 2.78 -0.63 3.64 0.63 2.13 2.25 -3.13 0 1.76 2.15
-1.75 2.76 0.63 3.54 0.88 2.02 -1.5 2.65 -2.78 0.63 -2.75 -0.5 -3.14 -0.89 -3.15 -2.52
--0.76 -3.54 1 -2.25 -0.37 -2.39 -0.24 -2.9 S
-1089.15 1166.69 1.39 -2.78 1.89 -2.65 2.78 -2.02 1.36 -3.52 -0.5 -2.91 3.28 -0.62 -0.5 2.78
--1.39 2.78 -1.39 3.02 0.5 2.02 -2.25 1.63 -2.39 1.65 1.39 2.52 -1.02 3.14 -0.86 3.28
--1.52 3.14 -0.63 3.78 -1.25 -4.03 1.02 -2.65 -0.89 -3.02 1.39 -3.14 -0.39 -2.39 S
-1115.32 1134.81 0.39 -2.39 0.87 -2.28 -0.13 -2.39 1.78 -1.65 0.24 -2.25 1.89 0.63 1.13 -2.14
--0.13 3.77 -1.76 2.15 -0.24 3.28 0.13 3.28 1 3.53 -1.63 3.15 -0.39 2.75 -0.36 3.79
--2.28 1.63 -0.5 -1.52 1.26 -5.54 0 -1.02 0.76 -4.14 -2.02 -2.64 S
-1037.07 1441.43 2.41 -2.02 1.26 -2.02 2.63 -1.39 2.64 -0.37 S
-1046 1435.63 2.89 0.13 2.52 1.13 2.52 0.13 1.65 1.89 1.49 1.89 1.52 1.89 2.26 1.64
-2.52 0.24 2.65 0.76 1.76 1 2.02 -1.37 2.63 0.74 2.15 -1.89 1.63 0.52 2.52 -0.75
-1.52 0.87 2.26 -0.24 2.14 1.26 2 1.13 2.52 0.37 2.02 1.15 1.39 2.65 1.26 2.13
--0.5 1.88 -1.76 1.39 -1.64 2.02 -1.39 0.63 -3.13 0.5 -2.41 0.63 -1.89 1.02 -2.89 1.5
--2.39 0.76 -2.14 -0.11 -1.5 0.37 -2.02 0.5 -1.62 1.39 -1.26 -0.37 -2.02 -1.15 -2.02 -0.11
--1.26 -1.91 -1.75 -1 -0.63 -1.76 -1.5 -1.39 -1.89 0.89 -0.26 2.52 -1.63 0.5 -2.52 0.24
-0.74 2.78 2.02 1.65 S
-1054.55 1466.25 -2.64 0.74 -1.76 -1.63 -3.38 0.63 0.24 2.02 -2.39 -0.63 -2.26 -0.63 0 -2.39
--0.89 -2.28 -2 -1.39 1.37 -2.65 0 -2.02 -1.63 -1.37 -0.76 -2.15 0.76 -2.28 0.5 -2.75
--2.12 -1.02 0.63 -2.88 -1.15 -2.15 S
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-0.76 2.91 -1.52 0.5 -1.5 1.02 1.75 0.63 1.13 2.52 1.89 1.13 -1.63 0.5 -1.75 -1.13
--2.78 -1.52 -1.89 -2.64 -2.52 -1.26 -1.76 -2.13 -0.76 -2.28 -1.76 -1.52 S
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-2.14 -0.63 S
-1119.36 1464.37 2.39 -1.78 1.89 -1.89 3.02 -1.5 2.52 0.11 -1.52 -1.37 -0.24 -2.28 0.76 -3.02
-0.61 -1.89 -1.5 -0.76 1.89 -3.04 1.75 -2.63 1.63 -2.54 2.41 -0.11 2.75 0.63 1.26 -1.15
-3.51 -0.63 2.65 0.13 2.65 2.41 2.25 2.25 3.14 0.89 -0.75 2.02 -2.89 3.14 -2.02 3.64
--0.87 3.64 -1.76 -0.23 -1.89 1.88 -1.02 2.39 -2.65 -1.39 -1.26 1.65 -0.62 3.14 2.52 0.24
-2.28 1.15 0.87 2.89 -2.39 1.02 -2.52 1 -2.25 1.76 -2.02 -1.62 0 -2.39 1.52 -2.02
--2.65 2.02 -1.63 2.13 -0.13 2.78 -1.39 1 -2.26 -1.13 -2.78 0.89 -2.13 2.39 -3.02 2.02
--2.41 -0.12 -0.63 1.39 S
-1116.45 1481.49 2.28 1.13 1.89 0.39 -2.39 2.26 0.74 2.64 2.15 1.76 2.75 -0.24 1.65 1.39
-1.75 1 -1.89 0.76 -1.76 2.02 -2.15 2.26 -3.02 1.25 -3.02 0.76 -1.52 -0.89 -2.13 -1
--1.75 -0.37 -1.02 -3.41 -1.89 -1.52 -1.37 -1.75 1 -1.26 -1.39 -1.13 0.26 -2.15 -2.78 -0.26
-0.49 -2.52 0.39 -3.14 0.13 -2.78 S
-1140.37 1497.75 1.88 -2.52 1.39 -1.02 2.13 -3.02 2.02 1.26 2.12 1.39 1.02 -0.63 1.5 2.26
--0.24 3.8 -1.89 2.52 1 1.26 0 2.02 -2.26 1 -3.14 1 -1 1.26 -0.62 2.91
--0.39 2.25 -0.87 -2.62 -1.39 0.37 -1.25 -2.15 1.25 -1.62 -1.52 0.13 0.75 -2.52 S
-1140.86 1505.05 -1.39 -1.02 -0.63 -1 1.26 -2.28 0.26 -3.02 S
-1179.1 1533.64 2.52 -0.5 2.15 -1 -3.14 4.02 -1.76 1.39 0.5 2.28 -0.26 2.13 1.02 2.78
-2.52 1.39 0.24 2.02 S
-1182.88 1548.13 2.65 0.5 1 2.39 -0.74 2.78 -0.89 -1.26 0 -1.89 -1.52 -0.89 -0.5 -1.63 S
-1182.88 1548.13 -1.5 -0.89 -2.02 -1.5 -1.39 -2.41 -1.39 -0.87 0.26 -2.91 0.13 -2.39 2.13 -3.53 S
-1182.51 1641.73 1.63 2.13 -1.14 2.78 -1.25 2.52 -3.28 2.41 -2.39 3.15 -1.39 2.88 -2.38 2.41
--3.52 3.14 -3.64 2.39 -3.41 1.39 -3.88 1.63 -3.54 1.78 -0.99 -0.89 1.89 -1.13 2.25 -1.02
-2.91 -1.89 3.02 -1.88 2.89 -1.89 S
-1166.28 1661.63 3.02 -2.65 3.02 -2.78 2.28 -2.13 1.75 -2.14 2.26 -2.15 2.26 -2.26 0.52 -2.52
-1.13 -3.28 S
-1007.38 1542.08 2.39 -1.26 1.89 -1.76 1.52 -2.02 1.13 0.37 0 1.52 2.15 0.63 0 1.89
--0.89 1.76 -1.76 1.39 -2.26 0.26 -1.65 0.89 -1.75 -0.52 -1 -1.76 0.24 -1.39 S
-1017.32 1549.26 1.52 -1 2.25 -0.13 1.13 -2.15 1.39 0.5 0.5 1.26 -1 1.65 -1.75 0.87
--1.65 1.39 -1 2.15 -2.13 0.63 -2.28 0.13 1.52 -0.89 1.37 0 1.02 -1.63 -1.63 -0.5
-0.74 -2.28 S
-1159.48 1085.05 -0.37 -2.39 0 -2.91 0.87 -2.25 -0.24 -3.77 -0.14 -3.28 1.63 -2.65 1.63 -1.75
-1.89 -1.15 S
-1164.75 1064.89 2.65 0.75 2.52 1.76 2.64 1.25 2.02 -0.24 2.38 3.15 1.26 2.52 1.37 3.02
-1.26 2.15 0.89 2.52 0.76 2.52 0.87 2.52 1.25 2.52 2.52 5.3 0.75 2.52 1.26 2.65
-1.26 3.14 1.26 3.17 1.76 3.64 0.76 3.02 0.89 3.67 0.24 2.52 1.52 1.63 0.63 2.65
-0.11 4.9 1.89 -2.12 2.02 3.38 -0.24 2.91 -0.39 4.41 -1.13 3.41 -0.26 3.41 -1.12 2.75
--1.5 2.65 -2.39 -2.89 -0.13 -3.04 -0.49 -2.64 -2.29 -1.37 -2.64 -1.02 0.26 -2.89 -1.89 -1.78
-0.26 -2.52 -2.28 -0.37 -2.39 -3.28 -2.26 -1.89 -2.78 -1.89 -2.75 -1.52 -2.78 -1.89 -2.13 -0.37
--1.76 -4.66 S
-1168.42 1114.91 -2.14 -3.15 0.13 -3.28 0.87 -3.27 -0.24 -2.52 0.87 -3.14 -0.74 -2.52 -2.15 -3.17
--1.12 -2.62 -2.15 -2.54 -2.25 -3.64 S
-1221.38 1099.66 0.39 -2 2.13 0.37 0.5 1.13 -1 1.25 -2.02 -0.75 S
-1232.57 1104.58 2.15 0.37 0.24 2.14 -1 0.76 -1.39 -3.28 S
-1204.14 1303.5 1.75 -0.5 2.02 0.74 2.02 2.41 -2.02 -0.26 -2.52 -0.37 -1.26 -2.02 S
-1208.42 934.27 -0.76 -2.52 -2.75 -2.41 2.75 0.89 0.39 -1.12 1.63 1.39 1.39 -0.13 2.13 2.02
--2.39 -0.39 -1.39 -0.37 0 1.5 0.26 2.02 -1.26 -0.87 S
-1360.53 1408.05 2 -5.55 1.78 -5.66 S
-1397 1340.91 2.52 -0.63 S
-1404.17 1334.09 1.65 -1.5 2.13 -2.02 S
-1407.95 1330.58 -0.76 3.28 -2.52 2.38 -0.5 -2.14 S
-1413.11 1320.25 1 -3.78 1.26 -1.26 1.02 1.63 -2.52 4.8 -0.76 -1.39 S
-1327.43 1332.46 1.13 -3.9 1.13 -2.65 1.89 -4.16 1.64 -2.13 1.76 1 2.02 2.78 1 3.28
--0.26 3.91 -1.13 4.03 -2.12 1.89 -2.02 2.75 -2.25 2.52 -2.28 2.41 -3.02 0.63 1.52 -2.28
--0.13 -3.39 0.76 -3.66 0.37 -3.02 S
-1372.09 1511.35 1.88 -2.78 2.13 -2.39 1.79 0.63 0.63 1.88 -0.52 4.04 -1.26 3.64 -2.26 4.17
--1.25 3.78 -1.63 2.13 -0.63 -2.39 -0.5 -2.25 -0.13 -2.54 1.13 -4.41 0.63 -3.52 S
-1354.47 1594.75 2.91 -2.91 3.52 -2.52 0.76 0.89 2.52 -1.65 -3.54 4.3 S
-1360.63 1592.86 -2.75 4.27 -3.02 3.78 -3.64 4.17 -3.28 4.14 -3.15 2.78 -0.75 -1.02 1.89 -3.91
-2.78 -4.14 2.63 -3.54 3.15 -4.64 S
-1278.86 1688.34 2.78 -0.52 -1 2.14 -2.52 1.65 1.63 0.11 2.89 -1.5 2.65 -2.52 2.78 -1.52
-2.88 -1.52 -0.26 2.41 -3.88 4.41 -3.66 2.13 -4.14 3.04 -3.52 2.76 -2.25 0 -2.65 0.89
-1.39 -2.52 -1.25 0 1.88 -2.91 3.25 -3.14 3.02 -3.39 S
-1270.45 1702.95 3.02 -0.63 -0.24 2.02 -2.78 1.89 -2.26 1.63 -2.78 3.14 0.76 0.89 -3.14 2.28
--2.89 2.52 -2.02 0.5 0.5 -2.15 2.15 -2.75 3.01 -2.28 1 -2.25 2.78 -1.91 2.89 -2.89 S
-1267.79 1699.04 2.91 -1.25 S
-1270.71 1697.79 -2.15 3.14 -0.89 2.28 -3.13 2.75 -2.41 3.15 -2.89 3.41 -1.89 2.39 -3.52 3.54
--0.89 2.02 -1.89 2.89 4.04 -2.76 2.75 -1.15 2.15 0.13 -0.62 1.52 -4.91 3.52 -4.91 4.04
--1.52 -0.5 -3.14 2.15 1.02 1.5 -3.15 4.17 -5.8 4.14 2.76 -0.24 -5.64 2.64 -2.02 2.52
--2.78 1.63 4.41 -1.5 -4.27 3.38 -2.65 1.02 -3.14 2.13 -2.13 -0.11 -4.27 1.39 -2.78 1.5
--4.28 1.25 -3.02 0.26 -2.39 1 -1.76 2.02 -2.78 0.5 -3.64 1.78 -4.28 1 -2.64 -0.26
--1.26 -1.13 -2.39 0 -2.52 0.63 1.39 -2.26 2.52 -0.62 -1.39 1.39 1.65 -0.26 1.76 -1.76
--0.26 -1.15 4.54 -1.88 S
-1193.71 1754.97 2.25 -0.37 2.78 -0.5 3.39 -0.5 3.41 -1.39 4.28 -2.02 4.01 -1.52 3.65 -2.78
-3.77 -1.76 3.28 -2.39 3.52 -3.15 3.78 -3.28 -2.26 0.63 -3.41 1.63 3.14 -2.52 3.28 -1.25
-4.04 -2.39 3.52 -2.38 2.75 -1.02 2.41 -2.02 -0.39 -1.39 2.52 -3.15 2.78 -3.52 2.89 -3.91
-1.52 -2.52 4.14 -3.14 3.64 -3.54 2.89 -2.78 2.52 -3.02 S
-1181.88 1755.99 2.52 -0.63 0.63 0.76 3.77 -0.52 -3.64 2.4 -3.41 2.52 0 -1.52 0.63 -1.62
--2.02 0.5 -1.36 1.39 0.11 0.87 -2.76 1.79 -2.64 2.12 -0.76 2.52 -1.62 2.91 -2.52 0.37
--3.64 1.52 -4.28 2.02 -2.28 2.26 -4.14 2.28 -3.91 1.76 S
-1150.54 1779.67 3.28 -2.15 -1.5 0 0.11 -0.87 -4.64 1.13 5.03 -2.39 1.76 -1.89 1.5 -2.28
-0.52 -2.02 -0.14 -1.26 -1.25 -1.26 -0.39 -1.39 3.28 -1.63 2.15 0.89 2.88 -0.52 2.52 -0.37
-3.02 -1.39 1.76 0.13 1.89 -0.39 2.02 -2 1.25 -1.65 1.76 0.13 4.54 -2.52 S
-1331.08 1649.02 -2.39 2.15 -1.75 2.65 -1.76 1.64 S
-1313.98 1667.69 -2.52 2.88 S
-1149.54 1778.41 -3.02 1.26 -3.14 1.13 S
-1139.34 1783.45 -4.77 2.02 -5.17 2.15 -5.64 1.89 3.89 -1.52 1.52 -1.39 4.28 -1.63 5.9 -1.52 S
-1119.49 1791.64 -2.15 1 -6.16 1.63 3.52 -1.37 4.79 -1.26 S
-1101.73 1797.44 -3.91 0.87 S
-1067.41 1801.34 1.23 0.5 -4.27 1.26 S
-1064.37 1803.11 -2.63 0 -1.15 -0.5 3.54 -0.39 3.28 -0.87 S
-1112.93 1748.54 0.63 1.02 -4.01 1.13 0.63 -1.63 2.75 -0.52 S
-997.96 1794.92 -5.79 0 0 -1.02 2.88 -0.12 2.91 1.15 S
-1107.77 1761.92 3.15 0.73 3.54 -0.11 3.02 0.37 0.75 1.13 2.26 0.52 3.27 0 2.63 0.5
-3.14 0.24 2.78 -0.11 2.65 -0.52 0.87 0.63 2.39 0.76 3.28 -0.5 3.64 0 3.52 -0.89
-3.14 0.89 -4.14 0.89 -2.76 1.26 -1.26 1.39 0.37 1.49 -3.15 0 0.38 -1.26 -1.63 -0.37
--0.26 -1.15 -1.37 -0.63 -3.28 0.13 -3.52 0.63 -2.41 0.13 -2.75 1.02 -2.02 1.49 -0.87 2.02
--1.78 -0.75 -2 -1.13 -1.88 -1.13 S
-1117.47 1769.59 -2.29 -0.89 -2.38 -0.76 -1.89 -1.13 -3.26 -0.26 -2.91 -0.37 -2.38 -0.89 -2.52 -0.74
--1.13 -1.02 2.02 -1 1.5 1 2.39 -0.37 3.14 -1.25 S
-922.22 1755.23 3.38 1.63 -0.37 1.15 -3.02 -0.62 S
-922.22 1757.38 -2.15 0.37 -4.53 -1.13 2.28 -1.39 4.41 0 S
-1000.21 1725.37 -0.26 1.65 -2.76 2.13 -1.65 -0.87 0 -2.28 2.41 -1 2.25 0.37 S
-997.07 1723.11 1.39 1 -1.39 0.5 -1.26 -0.74 1.26 -0.76 S
-981.34 1724.87 1.02 2.14 -1.89 2.65 -2.02 0.87 -2.52 -1 2.15 -1.76 2.63 -1.78 0.63 -1.13 S
-995.95 1717.82 1.49 2.02 -1.26 1.39 -2.52 0.76 -3.02 0.87 -0.37 1.26 -3.02 0.26 -3.02 -0.13 S
-984.25 1724.24 -1.13 -0.75 0.74 -1.26 1.02 -0.63 0.11 -2.02 3.41 0.39 0.5 -2.91 3.14 -0.62
-3.91 1.39 S
-1005.12 1676.63 -2.02 1.75 -0.37 2.02 -1.52 1.75 -3.52 0 -2.02 -1 -1.39 -1.39 1.39 -0.89
-3.02 -0.76 3.54 -0.87 2.89 -0.62 S
-990.54 1670.83 2.88 0.13 1.13 1.63 2.88 0.37 1.02 1.78 1 1.39 -0.63 1.37 -2.88 -0.24
--3.02 0.76 -2.15 -0.76 -1 -1.25 -2.15 -0.39 -1.76 0.52 -1.75 -0.76 -1.63 -0.52 2.38 -1.89
-2.89 -0.63 2.78 -1.5 S
-1014.7 1610.61 3.51 -0.5 3.02 -0.39 2.89 0.89 2.52 1.39 0.26 1.52 -3.52 -0.13 -2.78 1
--2.78 1.65 -2.39 2 -1.36 2.15 -1.02 2.38 S
-1013.04 1622.57 -1.26 2.29 -1.26 2.38 -1 2.52 -1.39 2.29 -0.37 2.52 -0.49 2.52 0.37 2.15
--0.13 2.39 -0.37 2.15 -2.78 1.63 -1.89 -0.63 0.26 -2.39 1.26 -1.65 -0.64 -2.39 -1.64 -1.76
-0.13 -2.78 0.76 -2.15 0.63 -1.37 -0.5 -2.54 1.63 -1.13 2.02 -2.88 0.76 -2.65 2.25 -0.76
--0.13 -1.89 1.39 -2.78 2.02 -1 -0.26 -2.02 2.29 -2.02 S
-1022.75 1595.88 1.36 2.02 -1 1.76 -3.28 0.13 0.39 -2.02 2.52 -1.89 S
-976.82 1645.5 1.13 1.14 -0.75 1.88 S
-977.2 1648.52 1.88 1.15 -0.26 0.87 -2.62 1.26 S
-976.2 1651.8 1.37 0.76 -0.37 1.26 -2.76 0.76 0.61 -1.76 1.15 -1.02 S
-976.2 1651.8 -0.63 -2.02 S
-975.57 1649.79 1.63 -1.26 S
-977.2 1648.52 -1.26 -1.13 0.89 -1.89 S
-972.03 1646.77 2.28 0.63 0.37 1.76 -1.63 0.26 -1.12 1.63 -2.52 1.15 0.74 -2.15 2.02 -1.26
--1 -0.89 0.87 -1.13 S
-974.04 1644.25 1.13 1.25 -1.75 0.14 0.63 -1.39 S
-966 1640.84 1.52 0 1.13 0.76 1.13 -1 1.75 0.37 0.89 1.13 -1.39 1.02 -0.5 1.5
--1.13 0 -0.62 -2.02 -0.89 0.63 -1.52 0.13 -0.36 -2.52 S
-934.92 1626.48 0.5 -2 1.52 -2.91 2.52 -2.15 2.52 0.39 -1.52 -1.64 1.13 -2.02 2.41 -2.13
-3.38 -2.14 -0.37 2.52 0.13 2.64 0.11 2.78 -0.74 1.89 1.13 1.39 1.5 -2.02 1.76 -1.02
-0 -2.64 2.91 -0.24 S
-953.8 1617.17 1.49 3.14 -2.88 1 -2.02 1.25 -1.63 1.79 -3.64 0.86 -1.39 2.52 3.28 -1.26
-3.64 0.13 1.39 1.75 0.24 2.41 -0.87 1.39 -2.41 -0.26 -2.38 0.26 -1.37 -1.65 -1.79 1.26
--1.62 -1.63 0.63 -1.52 -2.02 0.13 -0.37 -1.89 -2.15 0.5 -3.02 -0.89 S
-901.21 1536.16 1.37 -0.5 1.78 1.89 -2.52 -0.24 -0.63 -1.15 S
-917.55 1525.71 0.89 1 0 -2.28 S
-912.16 1520.16 1.52 -1.26 S
-899.07 1512.21 2.78 2.15 1 2.64 -2.78 -1.62 -0.11 -1.79 -0.89 -1.39 S
-954.93 1501.52 1.39 -2.14 2.13 0.26 -0.13 1.76 -1.76 0.89 -1.62 -0.76 S
-959.2 1503.14 1 -2.52 1.89 -0.24 1.89 1 -1 1.02 1.13 1.37 S
-964.11 1503.78 -0.87 2.02 -2.02 -1.26 -2.02 -1.39 S
-959.57 1498.5 1.39 -1.25 1.65 0.74 0.63 0.89 -1.78 0.39 -1.89 -0.76 S
-979.71 1515.75 1.13 -2.15 1.25 1.26 -0.63 2.28 0.89 1.39 -2.02 -1.15 -0.63 -1.63 S
-989.91 1522.18 1.37 -1 1.13 1.37 1.15 1.39 -2.78 0 -0.87 -1.76 S
-990.41 1525.33 0.5 -0.76 1.5 1.02 -1.87 0.88 -0.13 -1.13 S
-901.21 1471.42 1.89 -0.52 2.25 1.65 3.02 -0.89 0.76 2.15 2.52 0.5 2.75 -1 2.52 1.26
-2.78 -0.39 2.75 0 3.14 0.89 1.76 2.25 -3.02 0.39 1.52 2.39 2.02 1.39 0.86 2.28
--0.86 1.76 -2.15 0.87 -1.52 0 -1.12 -1.37 -0.87 0.87 1.13 1.39 S
-923.35 1487.29 -0.5 1.89 -0.89 1.26 -0.63 1.76 -0.87 2.41 -2.28 0.87 -1.13 2.28 -0.5 2.64
--1.02 1.76 -2.25 1 -2.13 0 1.63 1.39 1.52 1.78 1.13 2.13 0.88 1.78 -0.24 1.89
--2.65 0 -2.15 0.11 -2.38 -0.36 1.13 2.15 2.78 1.75 -0.5 1.26 -2.91 -0.26 -2.89 0
--1.13 -2.12 -1.52 -1.65 -0.37 -1.75 -1.52 0.89 -1.14 -0.76 1.14 -1.39 2.14 -0.13 -1.52 -2.65
--0.11 -1.89 1.89 0.89 -0.39 -2.28 -2.39 -1.63 2.02 -0.13 -0.26 -1.76 1.88 2.13 1.26 -1.89
--1.63 -3.02 1 -1.89 2.64 0.89 2.65 0.73 -1.26 -2.26 1.37 -1.75 1.65 0 -1.25 -2.28
-0 -2.26 -2.15 -0.39 S
-909.5 1488.41 -3.14 0.52 0.5 -1.39 -1.37 -1.78 2.13 0 -0.13 -2.76 -1.87 -0.89 -2.15 -1.26
-0.5 -1.39 2.39 0.39 1.89 -0.52 1.76 -1.39 2.41 1.29 -1.25 -2.28 -1.89 0.13 -2.15 0
--1.63 -2.15 -2.02 -1.75 -2.26 -1.76 S
-884.98 1483.88 0.63 -2.26 1.63 -1.52 3.02 0.13 2.91 0.76 2.88 1.63 3.28 0.26 0.74 2.25
-0.89 2.28 -0.14 2.65 -0.36 2.39 2.52 1.65 -0.39 2.75 -1 1.75 -2.25 0.65 -2.52 0.63
--2.52 -0.76 -1.76 -2.15 1.63 -1 -1.25 -1.26 -2.02 0.11 -2.25 0.13 -1.13 -1.62 1.63 -1.15
--2.02 -1.12 1.52 -2.02 1.76 -0.11 -2.02 -2.54 -1.26 -2.63 -2.12 0.11 S
-958.94 1430.34 -0.11 -2.39 0.5 -1.75 2.38 -2.15 0.38 2.78 0.63 1.89 -0.5 1.89 -0.36 2.78
--0.89 -1.91 -2.02 -1.12 S
-957.68 1421.4 0.13 -1.89 1.26 -2.15 0.26 -2.89 -0.13 -2.78 2.02 -1.76 1.25 2.02 1.89 0.13
-0.5 2.25 0.13 2.39 -0.26 2.41 -0.5 2.26 -2.14 2.14 -1.89 -2.02 -1.37 -0.5 -1.15 0.37 S
-977.69 1406.04 1.76 -2.15 1.52 0.13 3.28 -1.52 2.39 -0.24 1.63 -1.78 3.14 -0.11 0.5 1.89
--1 1.76 0.26 2.91 1.13 2.52 -2.78 -1.25 -3.28 -0.76 -2.62 -0.26 -2.02 0.76 -2.15 -0.26
--1.76 -1.62 S
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--1.89 -2.02 -2.13 1.26 -1.89 -2.02 S
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-1.25 2.02 1.76 1.76 1.39 0.63 1.75 -0.89 1.52 0.89 1.63 0.63 1.39 1.63 S
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--1.49 -0.74 -1.39 -2.52 -1.89 -0.39 -0.63 3.91 -1.26 1.39 -1.5 -1.02 -1.88 -0.24 -1.76 0.63
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-0.5 1.39 0.63 1.39 S
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--0.24 -3.8 S
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--0.5 -1.76 -0.52 -2.28 -0.49 -2.25 S
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--1.52 0.13 -1 -3.28 0.26 -5.42 S
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--0.63 -1.39 S
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-0.37 3.03 0.39 2 0.37 2.02 0.5 1.89 0.39 2.02 0.24 2.52 0.39 2.52 0 5.55
--0.52 -1.02 -0.5 -1.13 -0.37 -1.62 -0.5 -1.52 -0.52 -1.76 S
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--0.39 -1.65 0 -2.52 -0.11 -2.39 0.11 -4.17 0.26 -4.14 S
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-0.63 -3.41 S
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-0.5 -3.28 0.76 -3.78 0.76 -3.67 1 -3.78 0.89 -3.91 S
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--1.65 3.52 -1.37 -2.39 -0.13 -3.91 S
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-1445.81 1337.76 -2.02 -0.52 0.76 -5.53 S
-1465.56 1313.32 1.39 1.63 1.39 1.76 -1.02 -4.67 -1.75 1.28 S
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-1.26 -5.03 1.76 1.39 1.26 2.52 0.52 2.91 1.63 -6.81 0.99 3.53 1.39 1.89 0.63 3.91
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--0.74 7.95 -2.02 3.41 -0.13 5.79 0.13 5.04 -0.63 5.04 -1.52 5.92 -0.99 5.53 -0.5 4.17
-0.87 2.39 0.89 3.54 -1.75 1.5 -1.76 1.15 -2.14 2.02 -0.63 4.14 -2.02 2.28 -2.12 3.38
--0.89 5.3 -1.89 5.66 S
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--1.89 4.27 -2.02 0.39 -1.39 0.87 1.13 -5.17 0.52 -5.27 1.26 -4.43 0.87 -6.92 1.39 -3.52
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-1.13 -5.69 1.26 -6.92 -1.5 -1.26 -1.65 -1.62 -1.88 0.23 0 -5.29 1.02 -5.66 S
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-0.5 1.52 0.39 1.39 -0.52 2.39 -0.64 2.52 -0.49 2.78 -0.37 2.78 -0.63 2.64 -0.5 2.65
--1.13 5.17 -1.65 4.27 0 5.3 S
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-0.86 -0.26 0.76 -0.24 1.26 -6.55 0.5 0 0.63 0.13 0.13 1.99 0 2.02 0.89 -4.02
-0.87 -4.04 0.63 -1.13 0.76 -1.02 0.13 2.9 0.13 2.89 -1.26 6.29 -0.89 1.52 -0.87 1.52
--0.89 2.02 -1 1.89 -0.76 0.73 -0.89 0.76 -0.14 2.52 0 2.52 -0.86 1.65 -0.76 1.63
--0.76 1.15 -0.62 1.13 -1.14 1.52 -0.99 1.63 0.13 2.64 0.11 2.65 -0.11 2.64 -0.13 2.76
--0.26 3.17 -0.37 3.14 0.5 1.39 0.5 1.37 -0.87 1.02 -0.76 0.87 -0.26 -2.39 S
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--0.13 -1.5 -1.25 -0.52 -1 -1.76 -1.13 -2.02 -1.39 -0.87 1.5 -6.82 -1.13 -3.28 0.89 -3.51 S
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-1.02 -1.25 0.87 -0.37 0.89 -0.39 -1.13 1.52 -1.12 1.5 -0.89 1.91 -0.89 2 -0.99 2.91
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-0.87 -2.41 0.89 -2.25 0.76 -2.65 0.74 -2.64 S
-1487.2 1405.77 0.89 -1.5 0.88 -1.52 0.63 0.37 0.63 0.39 S
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--0.39 -1.39 -0.63 0.26 -0.63 0.24 -0.24 -2 -0.13 -2.02 -0.5 -1.78 -0.39 -1.76 0.39 -2.78
-0.37 -2.75 S
-1480.27 1414.34 0.63 1.89 0.52 1.89 S
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-1481.04 1462.98 0.63 -0.13 0.76 -0.13 -0.26 2.39 -0.24 2.41 -0.63 -0.13 S
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-0 -2.02 S
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-0.76 -0.26 0.26 3.04 0 3.91 -0.26 2.75 -0.24 2.91 1.13 -3.54 1 -3.41 -0.24 -1.75
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-0.26 1.26 -0.76 4.3 -0.87 4.28 S
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-0.5 0.76 0.37 0.87 0.76 0.13 0.63 0.26 0.5 0.63 0.5 0.76 0.52 0 0.63 -0.14
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-0.39 0.89 0.24 1 0.26 3.04 0.5 0.5 S
-1523.8 1419.64 0.5 0.5 -0.74 7.81 -0.52 2.52 -0.49 2.65 -0.87 2.78 -0.89 2.75 -0.37 2.65
--0.39 2.64 -0.49 2.91 -0.64 2.88 -0.99 4.54 -1.02 4.54 0 1.75 -0.11 1.89 0.37 -0.11
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-0.89 -2.28 -0.37 3.14 -0.52 3.28 -1.13 4.67 -1.26 4.79 0 -3.14 -0.37 -0.13 -0.26 -0.26 S
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--1.25 4.41 0.5 -3.38 0.49 -3.54 -1.25 3.14 -1.24 3.02 -1.65 4.8 -1.62 4.66 -0.5 0
--0.52 0.13 -1.26 2.13 -1.13 2.02 -1.13 2.78 -1.13 2.65 -1 4.77 -0.52 2.41 -0.5 2.39
--1.63 4.16 -1.52 3.88 -0.76 1.02 -0.87 0.89 0.76 -3.28 0.63 -3.14 -0.63 0.11 -0.63 0.26
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--0.76 0.26 -0.63 0.26 -1 -0.52 -0.36 -0.24 -0.5 -0.39 0 -2.62 -0.39 -0.63 S
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--0.99 -1 0.13 -1.64 0.14 -1.5 -0.26 -0.89 -0.37 -0.76 -0.26 -0.76 -0.37 -0.75 S
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-0.26 -2.26 0.11 -2.15 1.02 -3.91 0.87 -3.91 0.76 -2.89 0.75 -2.91 0.88 -3.28 0.89 -3.38
--0.26 -2.52 -0.74 0.74 -0.76 0.63 -1.12 2.54 -1.13 2.52 -0.52 -0.26 -0.37 -0.37 -1.12 2.52
--1.13 2.39 -1.15 3.41 -1 3.52 -1.63 2.91 -1.52 3.02 -0.13 -2.15 0 -2.12 -0.87 0.63 S
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-0.87 -4.02 0.89 -4.04 S
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-2.25 -3.17 1.02 1.89 -1.63 5.29 1.37 0.5 3.27 -1.63 -2.26 3.14 -1.78 2.02 1.39 1
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--2.88 4.27 -1.89 0.5 -2.78 3.41 -3.39 4.66 1.5 -3.9 -0.37 -1.78 -1.39 -0.64 0.5 -2.75 S
-1384.42 1565.64 2.89 -4.29 2.28 -3.78 2.26 -1.89 3.28 -4.9 2.65 -3.54 -1.02 -1.5 S
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-3.25 -7.68 1.89 -6.19 1.13 -4.4 1.26 -5.93 1.02 -4.91 1.76 -5.29 S
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--0.26 -2.15 S
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--0.39 3.64 -2.25 1.89 -2.13 3.28 0 4.03 -3.28 3.65 -2.15 3.27 -2.26 1.79 0.5 -3.67
--0.5 -1.76 S
-1427.06 1514 -0.13 3.91 1.02 0.49 S
-1427.95 1518.4 2.13 -3.4 1.02 -4.27 2.12 -2.15 1.78 -0.89 -1.02 3.91 -2.52 3.28 0.89 0.52
--1.52 4.14 1.75 -1.39 -0.37 3.67 -2.02 3.38 -0.63 -2.13 -2.02 3.28 -2.63 4.02 2.13 -4.28
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-2.41 -4.41 2 -3.77 S
-1442.79 1486.52 1.63 -2.52 -1.75 4.67 -1.76 4.91 -0.13 2.52 2.02 -3.02 -0.12 2.52 -1.39 4.8
-1.15 0.87 1.25 -0.74 1.37 -4.3 2.65 -5.16 1.39 -0.37 1.49 0.13 0.13 0.87 0 1.02
-0.89 -0.63 0.87 -0.52 -1 3.17 -1.13 3.26 -0.75 1.02 -0.89 1 -0.87 0.76 -0.89 0.75 S
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--1.13 2.78 -1.26 2.64 -0.87 2.65 -1.15 2.64 -1 1.76 -1 1.88 -1.52 1.76 -1.5 1.78
--3.04 5.03 -2.62 2.26 -2.15 0 3.41 -5.16 1.26 -4.04 -1.02 -0.5 2.52 -5.17 0.13 -3.14
-1.52 -4.78 -2.02 3.15 -1.02 -0.52 0.63 -3.78 1.39 -4.14 0.39 -4.3 1 -3.39 2.52 -5.55 S
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--0.24 1.64 -0.5 2.39 -0.52 2.39 -0.63 2.41 -0.63 2.39 -1.5 4.54 -1.64 4.54 -2.12 5.53
--2.26 5.56 S
-1493.88 1553.93 -0.76 2.15 -0.63 2.13 -2.52 5.16 -2.52 5.03 -2.02 4.43 -2.02 4.41 -3.78 6.03
-1.52 -3.91 1.39 -4.02 2.75 -4.92 2.91 -5.03 0.63 -2.15 0.74 -2.13 2.91 -6.68 2.89 -6.8
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-0.37 -2.02 0.26 -2.02 S
-1480.79 1558.7 -0.62 2.29 -0.63 2.25 S
-1471.72 1591.84 0.63 0.13 1.89 0 -0.37 1.13 -0.39 1.13 S
-1473.48 1594.23 2.28 -3.14 2.25 -3.28 2.39 -3.78 2.38 -3.91 -2.62 5.3 -2.78 5.43 -1.5 2.12
--1.52 2.29 -0.37 -0.5 -0.52 -0.52 S
-1473.48 1594.23 -0.37 0.13 S
-1473.11 1594.36 -0.36 0.13 -0.39 -0.5 -0.24 -0.63 -0.25 -0.76 -0.13 -0.76 S
-1480.67 1590.08 1.62 -2.65 1.65 -2.64 1.5 -2.78 1.13 -1.63 1.02 -1.52 1.13 -1.62 0.5 -0.76
-0.63 -0.63 0.5 -0.75 -1.5 3.53 -1.65 3.39 -1.5 3.53 -0.76 0.76 -0.62 0.74 -0.63 0.76
--1.39 2.02 -1.39 1.89 -1.36 1.78 0.37 -1.15 0.37 -1.13 0.39 -1.13 S
-1484.05 1589.58 0.39 -0.12 0.38 -0.14 0.49 -0.26 0.13 0.26 0.26 0.26 S
-1493.88 1573.96 0.74 -1.02 0.76 -0.87 0.89 -1.02 S
-1481.92 1599.91 0.24 -0.12 0.26 -0.13 0.26 -0.26 0.24 0.13 0.5 0 0.26 -0.13 0.26 -0.11
-0.24 -0.13 S
-1477.39 1613.52 1.75 -2.78 1.65 -2.78 1.76 -2.89 0.76 -1.26 0.87 -1.28 0.89 -1.37 1.13 -1.65
-2.26 -3.52 S
-1495.75 1576.84 1.02 -2.13 1.13 -2.28 1 -2.25 0.89 -1.39 1.52 -2.78 -0.63 1.89 -1.52 3.77
--0.37 1.26 -0.52 1.26 -0.37 1.26 -1.63 3.54 -1.75 3.53 -1.65 3.52 -0.5 -0.5 1.13 -2.9
-1.13 -2.89 1.13 -2.91 S
-1496.38 1580.25 1.02 -1.63 1.13 -1.65 1 -1.63 -0.87 2.13 -0.89 2.28 -0.87 2.39 -1.15 1.89
--1.13 1.76 -1 1.91 0.89 -2.54 0.99 -2.52 0.88 -2.39 S
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-1.45 8.86 P
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-7.73 2 3.12 -4.82 7.68 2.11 8.64 3.49 4.73 1.41 11.11 4.34 2.13 0.7 1 1.72
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--2.75 -3.04 -3.15 -0.15 3.64 3.91 0 2.86 f*
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-2.61 -2.21 4.62 5.46 -3.25 2.09 0 5.16 1.52 1.37 3.36 0.48 6.55 -5.62 -11.44 -13.48
--2.21 -2.08 -13.3 -11.24 f*
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-6.92 6.62 -4.28 0.91 0 1.89 1 0.63 7.86 -1.76 -12.71 -12.15 -11.61 0.08 f*
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-0 1.91 0.93 0.63 4.28 -0.91 -6.92 -6.62 f*
-2 239 204 rG
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-110 210 9 rG
-2171.48 1679.58 -1.04 0.2 1.43 0.93 0.65 -0.13 -1.04 -1 f*
-0 255 r6
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-110 210 9 rG
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--7.25 -8.03 P
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-8.64 9.46 1.76 0.54 -0.22 -1.71 2.84 -6.73 6.23 0.25 1.86 8.9 1.09 4.41 -0.93 6.27
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-8.27 10.59 12.87 3.25 2.5 -5.12 3.23 0.87 3.13 3.93 4.51 6.83 4.32 0.59 0 -1.02
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-5.96 5.97 1.93 1.48 2 4.38 6.21 4.34 10.15 1.48 3.73 0.48 7.33 0.52 7.25 0.2
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--11.04 8.79 3.64 1.75 -1.11 1 -9.05 9.22 -0.89 1.09 -7.5 9.37 5.14 1.54 -0.69 1.07 p f*
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-6.55 -0.71 P
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--8.03 8.14 -1.8 2.17 -6.55 8.14 4.93 1.66 -1.39 2.15 p f*
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-7.68 4.71 6.77 4.67 6.05 4.64 5.38 4.58 4.67 4.47 4.27 4.44 2.95 4.13 3.41 4.36
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-6.39 -0.93 P
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-0.46 2.47 0.78 2.41 1.26 2.23 1.54 2.18 1.73 2.13 2.2 1.93 2.16 2 3.5 1.43
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-4.66 1.8 -2.06 3.2 p f*
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-7.72 4.66 6.75 4.62 6.04 4.59 5.38 4.53 4.62 4.43 4.3 4.4 2.8 4.06 3.54 4.32
-2.28 3.99 2.04 3.97 1.63 3.89 0.91 3.64 0.16 3.41 0.24 3.47 9.18 6.36 6.68 4.64
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-7.27 1.19 P
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--3.61 4.34 -4.6 5.67 4.45 1.93 -2.78 4.25 p f*
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--1.7 0.19 -1.2 1.02 1.63 0 0 1.28 f*
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--5.39 -5.73 -10.76 -3.97 5.55 5.55 5.29 2.08 5.3 2.06 0 0.63 -11.48 -4.54 f*
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-1.85 1.87 3.56 1.37 0 1.24 -5.29 -2.08 f*
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--4.75 5.64 f*
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-0 -5.99 1.25 -0.97 -0.5 -0.63 -1.69 0.91 0.93 0.69 0 5.99 -3.71 1.11 -6.62 -0.91 f*
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--3.02 0.89 0 1.04 6.23 -1.87 9.29 -2.75 0.43 -7.45 -17.92 5.47 f*
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--2.97 0.89 0 1.08 9.75 -2.93 0.37 -5.14 -12.46 3.78 f*
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--11.69 3.43 -2.67 0.87 -0.56 2.13 0.98 8.77 0 3.89 -3.37 1.23 f*
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--6.62 3.64 f*
-255 203 0 rG
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-0 255 r6
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--1.09 1.7 f*
-2 239 204 rG
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--6.27 -4.82 -1.48 0.02 -14.32 2.32 f*
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--2.5 2.26 1.65 0.61 0 3 -1.2 0.78 f*
-255 0 r6
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-2 239 204 rG
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--4.27 1.19 f*
-110 210 9 rG
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--3.71 1.48 -13.41 5.57 -0.43 0.13 f*
-0 255 r6
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--6.4 -0.48 -11.48 1.97 -2.52 0.54 -13.8 2.39 -0.35 0.13 f*
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--0.09 6.12 -4.8 0.3 -10.74 3.28 -5.34 3.34 -2.34 1.43 0 1.48 8.64 -5.34 8.57 -2.61
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--10.91 1.87 f*
-2 239 204 rG
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--2.15 4.77 -2.93 13.93 6.55 6.08 1.08 11.15 0.24 4.04 -4.53 11.26 -1.8 9.38 -6.32 7.81
--3.54 5.93 -2.58 -1.41 -4.93 -6.49 -4.43 -6.86 f*
-255 135 0 rG
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--0.05 2.71 -2.12 0.15 -12.93 3.95 -2.09 1.32 -2.3 1.46 0 1.47 5.34 -3.34 10.74 -3.28
-4.8 -0.3 0.09 -6.12 -5.45 0.91 -8.73 1.82 -7.64 1.28 f*
-255 35 0 rG
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-0 1.49 2.09 -1.32 12.93 -3.95 2.13 -0.15 0.05 -2.71 -2.43 0.39 -11.83 2.43 -4.38 0.74 f*
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-7 193 59 rG
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--11.75 -1 -5.12 -8.46 -5.71 -8.01 -3.71 -0.54 -4.53 3.5 -6.3 4.84 -7.42 13.11 f*
-110 210 9 rG
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-1.93 -8.77 7.77 -0.69 6.68 -1.24 12.09 -4.94 -7.21 15.34 -7.36 -0.62 -7.73 0.33 -5 0.47
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-1.04 -4.88 1.13 -3.97 0.57 -6.1 -1.8 5.36 -0.93 4.82 -1.29 5.99 -1.15 4.36 -1.91 6.21
--3.26 7.68 0 16.17 -1.43 1.56 0.63 2.61 1.3 -1.5 0.17 3.34 2.96 -5.12 0.58 1.66
-2.06 -3.77 -1.15 4.36 -2.08 4.27 0 2.52 -1.73 2.63 0.5 1.67 -2.26 4.32 -1.32 -0.97
--2.69 2.91 0.41 1.82 -0.5 3.56 0 172.03 -0.02 0.04 -2.64 3.11 -2.65 3.06 -2.63 3.04
--2.64 2.99 -2.62 2.95 -2.62 2.91 -2.65 2.89 -5.25 5.64 -2.63 2.75 -2.61 2.73 -2.62 2.69
--1.59 1.63 0 -182.53 3.37 -4.73 2.87 -3.36 1.86 -0.46 2.84 -4.41 2.32 -4.71 2.3 -5.29
-2.69 -4.45 3.64 -3.47 2.69 -2.78 0.93 1.17 -1.3 3.71 0 1.93 0.93 1.08 1.32 1.54
-0.48 -2.56 1.82 -1.58 2.22 -0.67 0.49 -2.64 -0.93 -1.07 -3.12 2.43 -1.39 -0.98 1.78 -1.96
-2.24 -3.17 -1.67 0.84 0 -6.9 1.8 -0.67 2.59 -3.82 1.49 -4.8 -1.78 1.17 -2.61 2.87
--2.3 1.37 0.18 2.25 0.63 1.63 0 6.9 -1.55 0.76 -1.41 -0.48 1.64 -5.32 -1.08 -1.91
--2.19 3.11 -1.63 4.23 -1.41 0.02 1.71 -2.91 -1.91 -0.32 -2.65 3.19 -2.23 2.56 -3.13 3.6
-1.05 1.52 -2.72 3.49 -3.21 4.99 -2.25 1.87 -2.32 3.76 -2.82 4.25 -0.48 2.75 1.34 0.68
-0.39 1.8 -1.54 3.93 0 182.53 -1.52 1.54 -6.3 6.29 -3.19 3.11 -1.61 1.54 0 -243.33
-1.65 -2.15 1.3 -3.76 2.26 -4.1 1.19 -3.71 0.55 -4 -0.55 -1.93 -1.86 -0.61 -2.09 2.43
--1.93 2.69 -0.67 3.5 -1.02 4.51 0.09 2.45 0.56 2.32 0.52 2.34 0 243.33 -1.61 1.57
--3.23 3.06 -3.25 3.06 -3.3 3.04 -3.3 3.02 -3.32 3.02 -3.37 2.97 -3.36 2.95 -2 1.71
-0 -182.23 3.11 -2.73 3.23 -4.1 3.66 -4.21 3.13 -3.8 2.67 -4.21 3.54 -4.36 -2.43 1.63
--0.82 -0.87 -3.47 2.63 -2.97 2.88 -3.17 4.58 -2.62 3.63 -2.78 4.05 -1.87 3.99 0.8 0.89
-0 182.23 -1.41 1.22 -3.41 2.91 -3.45 2.89 -3.45 2.86 -3.47 2.82 -2.93 2.37 -2.97 2.37
--3 2.36 p
--3.05 2.37 -3.08 2.39 -3.14 2.37 -3.18 2.38 -3.21 2.37 -3.28 2.39 -3.29 2.39 -3.34 2.36
--3.41 2.39 -3.43 2.39 -3.49 2.36 -3.54 2.39 -3.56 2.37 -3.64 2.37 -3.66 2.37 -3.71 2.34
--1.68 1.07 -3.43 2.13 -1.75 1.09 -1.79 1.08 -1.8 1.09 -1.82 1.11 -1.87 1.11 -1.87 1.13
--3.86 2.25 -1.98 1.13 -1.99 1.15 -2.02 1.17 -2.07 1.15 -2.1 1.17 -2.13 1.19 -2.15 1.18
--2.19 1.19 -2.24 1.2 -2.25 1.22 -2.28 1.21 1.63 -0.85 1.63 -0.86 1.67 -0.89 1.67 -0.91
-1.7 -0.92 1.71 -0.93 1.71 -0.96 1.74 -0.96 1.76 -0.98 1.78 -1 3.61 -2.04 1.82 -1.04
-1.84 -1.09 1.87 -1.08 1.5 -0.87 -4.88 2.88 -4.92 2.78 -4.91 2.78 -4.97 2.72 -4.97 2.69
--5.01 2.63 -5.04 2.6 -5.06 2.54 -5.05 2.52 -5.1 2.45 -5.1 2.43 -3.78 1.71 0 -130.03
-4.28 -0.98 3.64 -1.82 2.8 -0.5 1.82 -1.91 2.37 -1.04 3.02 -0.33 4.26 -1.2 2.78 -1.58
-4.32 -1.34 2.13 0.11 3.14 -2.06 2.65 -1.06 4.17 -3.38 -4.32 1.52 2.76 -1.72 2.07 -2.49
-5.64 -2.64 -2.82 0.24 5.79 -4.06 3.17 -4.21 -1.07 -1.54 3.19 -2.06 1.45 0.46 4.95 -4.02
-4.95 -3.52 0.57 -1.5 -1.84 -0.13 0 -2.34 2.06 -0.5 2.84 -2.46 3.1 -2.25 -0.72 -0.98
-2.74 -3.1 2.23 -1.65 2.78 -1.87 0.26 -2.06 -2.97 0.7 -2.93 2.93 -2.78 1.8 -0.93 2.32
--3.05 2.24 -2.13 2.78 -0.5 2.11 0 2.34 -0.21 -0.02 -2.85 1.11 -4.03 2.78 1.95 -2.93
-0.83 -1.91 3.6 -3.61 1.84 -2.34 2.95 -3.43 2.28 -3.21 3.22 -2.69 0.84 -2.28 2.11 -3.2
-1.3 0 -1.35 2.56 2.65 -0.87 2.21 -0.09 3.54 -2.67 4.12 -3.02 3.69 -2.23 3.84 -4.34
-0.29 -2.47 -2.88 1.56 -2.82 1.48 -2.54 2.61 -2.89 1.45 -1.65 -0.15 2.48 -1.54 1.02 -2.17
--2.82 0.46 -2.93 3.39 -3.32 3.21 -1.93 2.84 -2.82 1.28 -2.52 3.04 -2.87 2.8 -3.71 3.45
--4.12 3.23 -1.5 2.47 -2.89 3.93 -2.8 3.54 -2.47 3.06 0.29 1.47 -2.32 2.04 -2.82 0.93
--3.52 2.34 -4.04 2.52 -3.16 1.22 -3.26 2.47 3.5 -1.61 2.28 -0.67 -3.88 3.28 -3.41 3.15
--3.3 2.36 -3.78 1.86 -3.71 2.72 -4.05 1.52 -4.17 2.06 -3.49 1.3 -3.35 0.59 -2.73 0.46
--2.23 0.34 -4.64 1.89 0.24 1.21 -1.7 1.74 -1.65 0.22 1.37 -1.39 -2.5 0.61 -1.34 2.34
-2.54 -0.65 2.37 0.04 1.25 1.04 2.56 0.29 0 130.03 -1.39 0.63 -5.14 2.34 -10.38 4.52
--5.21 2.16 -5.23 2.17 -5.25 2.09 -5.27 2.06 -5.29 2 -5.3 1.98 -5.34 1.89 -5.32 1.89
--10.72 3.6 -5.41 1.7 -5.38 1.71 -10.85 3.21 -5.45 1.52 -5.45 1.5 -5.49 1.43 -5.47 1.41
--10.98 2.65 -5.54 1.21 -5.51 1.24 -5.55 1.13 -5.53 1.13 -5.56 1.02 -5.55 1.04 -11.16 1.87
--5.6 0.85 -5.59 0.82 -11.2 1.48 -5.62 0.65 -5.62 0.63 -5.64 0.55 -5.62 0.54 -5.64 0.46
--5.64 0.43 -11.28 0.69 -5.64 0.26 -5.64 0.24 -5.66 0.15 -2.04 0.04 0 -0.11 2.54 -0.07
-2.52 -0.09 1.04 -0.02 1.21 -0.05 0.26 -0.02 2.5 -0.09 2.13 -0.09 6.1 -0.28 6.07 -0.34
-6.07 -0.39 6.08 -0.46 6.06 -0.5 6.01 -0.58 6.04 -0.61 5.99 -0.67 5.99 -0.74 5.95 -0.79
-5.95 -0.84 p
-5.92 -0.89 5.88 -0.95 5.86 -1 5.84 -1.05 5.8 -1.08 6.18 -1.23 6.2 -1.28 6.21 -1.34
-6.23 -1.43 6.23 -1.5 6.25 -1.57 6.25 -1.63 6.25 -1.69 6.25 -1.76 6.25 -1.82 6.27 -1.91
-6.25 -1.97 6.25 -2.04 6.23 -2.11 6.23 -2.17 6.23 -2.23 6.21 -2.3 6.19 -2.39 0.32 -0.12
-0.3 -0.11 0.61 -0.26 0.3 -0.11 0.29 -0.13 0.3 -0.11 0.28 -0.13 0.57 -0.22 0.28 -0.12
-0.29 -0.11 1.57 -0.65 -6.02 2.37 -5.62 2.15 0 -129.8 3.91 -1.89 4.23 -2.23 2.14 -2.23
-4.35 -2.02 3.66 -1.45 2.45 -0.45 1.72 -2.91 0.74 -2.52 2.6 -2.06 2.8 -1.78 -0.09 -0.89
-1.37 -1.39 1.95 -0.5 -0.58 1.59 -0.07 1.49 3.43 -2.52 3.67 -2.3 -3.82 0.5 -0.63 -0.82
--2.5 0.61 -4.53 2.61 -1.8 -0.16 -1.15 1.63 -2.04 1.98 -1.93 0.43 -1.8 -0.15 -2.93 1.36
--2.47 0.46 -3 0.41 -2.15 -0.82 -3.28 1.58 0.42 1.47 1.21 1.2 0.18 1.21 -0.44 2.13
--1.56 2.19 -1.73 1.87 -5.04 2.43 4.59 -1.2 -0.11 0.96 1.52 0 -3.28 2.19 0 129.8
--0.41 0.17 -6.08 2.23 -6.1 2.21 -6.14 2.13 -6.14 2.06 -1.91 0.64 0 -129.47 5.67 -1.95
-5.17 -2.15 4.75 -1.91 -5.82 1.52 -4.34 1.54 -1.54 1.46 -3.89 1.5 0 129.47 -0.56 0.17
-0 -146.57 0.87 -1.95 1.95 -1.58 2.8 -0.93 2.34 -0.16 3.52 -0.65 3.37 -0.12 1.34 0.65
-0.22 1.17 1.67 0.34 -0.35 1.2 3.06 0.11 -0.29 -1.52 1.15 -1.47 2.89 -1.16 4.1 -0.89
--3.12 -0.87 -3.58 0.84 -3.58 -0.06 -3.25 0.5 -2.41 -0.69 -0.87 -0.64 -2.67 0.46 -2.84 0.11
--3.04 -0.21 -2.72 -0.5 -3.29 -0.02 -2.21 -0.48 -0.78 -1.2 -2.99 -0.32 -3.54 0.11 -3.15 -0.67
--3.19 1.17 -2.32 0.45 -1.59 -1.06 -1.89 1.04 1.04 1 2.61 0.69 2.28 0.93 2.91 0.43
-3.26 0.15 1.99 1.13 2.29 0.88 2.3 0.84 1.95 1.11 1.95 1.09 1.82 0.75 0 146.57
--3.71 1.21 -6.21 1.95 -2.04 0.63 0 -128.67 6.14 -1.66 2.11 -1 -4.8 1.26 -3.45 1.41
-0 128.67 -4.19 1.28 -6.25 1.82 -6.27 1.76 -6.29 1.71 -6.3 1.63 -6.32 1.58 -6.31 1.5
--4.95 1.13 0 -132.27 4.26 -1.19 -1.24 -0.52 -3.19 0.91 -3.56 0.29 1.11 0.49 2.63 0.02
-0 132.27 -1.36 0.33 -7.25 1.56 -7.25 1.47 -7.23 1.39 -7.21 1.33 -2.56 0.43 0 -136.98
-3.71 -1.37 4.23 -0.28 3.08 1.06 4.88 0.31 4.73 -0.31 4.75 -0.74 -0.56 -1.06 -1.82 -0.89
--1.76 -1.24 -0.87 -1.97 -2.13 -1.43 -1.73 -1.67 -1.05 -1.24 -1.39 -1.47 -1.43 -1.11 -2.82 -1.2
--3.15 -0.74 -3.12 -0.79 -3.5 0.74 -3.04 -0.52 -0.59 -1.13 -2.78 1.09 -4.04 0.5 -4.62 -0.02
--4.21 -0.2 -3.11 -0.67 -4.77 -0.15 -3.95 -0.41 -2.41 -0.65 -3.69 0.07 -3.73 0.39 -1.93 -0.84
--2.24 -1.71 -1.93 -1.5 -3.16 -0.22 0.78 -0.86 4.78 -0.55 2.41 1.05 1.17 1.32 2.8 -0.41
-3.19 0.39 3.58 0.26 4.3 0.02 -0.17 -1.34 -0.79 -1.11 -3.75 -1.17 3.58 -0.49 1.89 -1.31
-3.54 -0.93 4.18 -0.82 3.67 0.32 3.73 0.32 4.04 -0.24 3.54 0.3 3.3 0.73 -2.11 1.29
--0.26 1.2 4.79 -1.72 2.11 -1.37 2.25 -0.3 4.14 -1.23 2.43 -1.21 -0.26 -1.02 -3.26 0.5
-0.07 -1.17 p
-2.13 -0.71 1.91 -1.39 1.5 -1.61 2.08 -0.75 1.47 0.36 1.13 0.17 1.84 -1.43 2.91 -1.3
-2.15 -2.17 3.17 -0.71 0.24 -0.98 2.87 -1.87 3.1 -2.11 2.78 -1.62 0.67 -0.39 3.39 -1.11
-2.84 -0.28 3.41 -1.2 3.19 -0.57 2.87 -0.39 3.16 -1.13 3.89 -1.32 3.47 -0.96 4.69 -1.09
-4.41 -1.47 3.97 -1.61 4.39 -1.61 0.82 -0.46 2.8 -1.57 1.34 0.3 -0.78 1.96 -2.63 2.06
-2.54 0.18 2.63 0.13 -3.82 1.02 -2.25 1.63 2.61 0.19 3.05 -0.84 -3.84 2.59 -4.86 1.36
--2.08 1.87 -0.7 1.19 0 -5.62 4.06 -1.15 -0.57 -1.02 -2.82 0.5 -0.67 1.67 0 5.62
--0.43 0.76 1.24 0.41 -0.16 1.57 -0.45 1.8 3.37 -0.41 2.45 0.28 0.63 0.87 2.91 -0.52
-3.62 -0.78 3.43 -0.59 3.34 -0.07 2.8 0.41 3.57 0.16 3.21 -0.5 3.69 -0.48 1.15 -0.48
-4.4 -1.8 4.95 -1.8 1.07 -0.46 3.38 -1.43 4.63 -1.11 3.86 -1.41 4.14 -1.78 4.73 -2.47
-5.29 -2.69 4.97 -2.98 0.54 -0.17 2.73 -0.93 4.97 -2.58 3.8 -3.04 4.1 -2.86 3.1 -3.02
-0.5 -2.71 -2.23 0.52 1.63 -2.38 2.39 -1.43 3.75 -2.08 0.91 -1.41 2.67 -1.29 2.71 -2.79
-4.66 -3.13 1.48 -0.15 3.43 -1.07 2.13 -2.19 3.53 -2.97 2.89 -2.8 2.06 -2.24 1.71 -2.45
-1.34 0.13 2.63 -1.63 0.59 1.59 1.3 1.02 2.3 0.02 1.48 0.63 2.06 0.43 3.04 -0.63
-3.21 -1.02 3.43 -1.46 3.11 -1.72 3.41 -2.47 3.06 -3.64 2.28 -4 2.3 -3.38 3.49 -4.06
--2.89 0.5 -3.41 1.72 -3.69 3.43 -3.43 0.67 -3.37 0.31 -1.71 2.97 -2.49 0.48 -1.26 -1.3
-1.99 -3.71 -1.71 -1.36 -3.3 2.39 -3.16 2.02 -3.88 2.54 -0.44 -1.06 0.16 -1.55 -0.04 -2.12
-1.54 -2.78 1.95 -2.67 2 -3.04 2.78 -2.54 2.41 -3 1.09 -2.06 -3.5 3.54 -1.73 -0.43
--1.91 1.52 -2.3 2.58 -3.32 2.67 -2.26 -0.21 0.35 -2.56 2.86 -2.78 3.3 -3.02 1.76 -2.67
-2.26 -2.93 2.39 -1.82 1.93 -1.91 1.21 -2.8 -0.71 -1.22 2.47 -2.56 2.32 -1.59 1.87 0.29
-1.26 0.89 1.15 1.28 2.67 -1.13 1.21 0.91 -0.45 1.89 -1.93 2.02 -2.04 2.37 -1.74 2.82
-1.24 0.65 -0.02 1.57 -0.7 2.28 -0.11 1.95 3.71 -2.86 -0.67 -0.91 2.34 -3.15 1.98 -3.67
-2.91 -2.23 2.21 -3.21 2.78 -3.61 2.4 -2.43 2.97 -2.82 1.07 1.69 1.04 1.71 3.09 -1.21
-2.49 -0.87 2.56 -0.98 2.65 -1.34 0.67 0.93 1.76 0.61 2.5 -0.97 0.63 -2.87 2.09 1.04
-2.06 -1.02 1.04 -2.49 1.37 -2.37 1.85 -2.39 1.04 -2.88 0.71 0.89 -1.06 3.28 0.75 0.91
-0.07 1.71 1.7 -1.56 3.82 -3.1 0.26 -1.29 3.36 -3.28 1.52 -0.78 1.73 -2.07 0.28 -1.73
-2.34 -2.97 2.76 -3.37 2.8 -3.43 2.25 -3.43 -0.3 -1.26 2.54 -1.8 2.06 -2.19 2.67 -3.56
-2.11 -3.08 1.61 -3.14 2.56 -3.17 0.11 -2.56 1.95 -1.86 1.52 -3.19 1.93 -3.99 1.43 -3.61
-1.91 -4.54 1.32 -4 0.3 -2.99 0.3 -2.95 -0.22 -2.47 2.15 -4.17 -2.54 0.11 2.63 -3.86
--2.02 -0.02 2.62 -3.45 0.55 -3.45 0.04 -2.89 0.89 -3.93 -0.11 -3.23 0.39 -3.41 1.5 -2.87
-2.37 -1.52 0.58 -2.26 -0.37 -1.52 -2.28 1.91 -1.32 1.21 -2.02 3.02 -0.37 -1.52 -1.71 -0.34
--0.56 -2.29 p
-0.24 -3.29 0.7 -3.47 0.54 -3.8 1 -3.91 1.63 -3.8 0.76 -4.32 1.67 -3.45 1.98 -4.02
-3.17 -2.36 2.2 -0.48 1.61 -1.83 2.54 -1.04 2.37 -1.3 2.66 -0.68 2.11 -0.45 2.39 -1.39
-2.47 -1.11 2.8 -3.34 2.41 -2.8 2.23 -3.25 2.08 -3.64 1.73 -3.08 2.52 -5.23 1.64 -3.12
-1 -3.23 0 -4.1 0.11 -3.71 0.11 -3.66 0.02 -3.7 -1.24 -2.45 2.11 -4.47 0.67 -4.55
--0.84 -2.76 0.15 -4.21 0.09 -4.23 -1.75 2.46 -1.65 3.79 -1.31 4.47 -1.75 -0.76 -1.72 1.46
--1.39 -2.34 -2.17 0.85 -2 2.02 -1.88 2.39 -1.74 1.39 -1.39 -0.09 -2.49 1.37 -1 -1.63
--1.5 -1.37 -2.04 4.13 -1.82 -0.76 -0.45 -2.82 1.8 -4.43 2.28 -4.78 0.91 -3.6 1.2 -4.25
-0.41 -3.38 1.37 -4.82 1.78 -4.26 1.93 -3.1 1.17 2.45 2.21 -4.67 1.89 -1.24 1.91 -3.14
-2.11 -3.8 1.65 -0.67 1.86 1.46 2.07 -1.93 2.1 -1.06 2.07 -1.02 2.04 -1.06 2.25 -2.67
-1.32 -3.99 1.26 -4.02 1.24 -4.01 1.19 -4.06 1.76 -1.56 2.28 -3.56 1.78 -4.19 -2.19 -2.66
--1.52 0.89 -1.8 0.56 -2.04 0.29 -1.71 1.5 -2.23 0.91 -1.41 3.66 -2.21 1.89 -2.2 2.73
--0.96 4.23 -1.56 1.69 -1.76 4.25 -1.07 3.15 -1.08 2.16 -1.2 1.46 -1.87 1.32 -1.84 1.3
--0.24 0.26 0 -22.48 2.08 -1.08 1.76 -2.38 2 -2.13 2.04 -1.13 2.13 -0.26 2.28 -0.87
-2.11 -2.84 2.36 -2.56 1.37 2.37 2.61 -2.32 1.67 1.09 2.32 -2.63 1.43 0.7 0.76 -4.41
-1.28 1.45 2.06 -2.02 0.57 -3.8 0.02 -4.38 1.61 -1.65 1.8 2 1.68 -5.17 1.48 -1
-1.17 -3.02 1.52 1.7 1.59 -1.82 -0.46 3.95 -1.17 1.32 -1.65 -1.02 0.15 3.8 1.35 2.43
-1.65 -3.5 1.21 -3.08 1.13 0.43 0.59 -4.69 -2.8 0.35 1.28 -2.04 0.02 -5.25 0.96 -5.92
-0.65 -4.45 0.44 -5.45 0.32 -4.73 -1.61 0.93 -1.32 -1.26 -0.29 -2.73 -1.24 0.5 -1.91 3.11
--2.02 1.35 -2.78 2.28 -1.86 2.34 -1 2.28 -2.08 1.26 -2.2 3.64 -2.08 2.91 -0.91 3.11
--2.02 3.84 -0.93 3.11 -2.08 2.09 -1.13 2.13 -1.07 0.06 0 -10.8 2.56 -4.82 -1.02 -1.7
--1.21 1.26 -1.02 3.82 0.7 1.43 0 10.8 -1.25 0.09 -1.78 4.82 -1.76 3.17 -0.63 2.62
--2.3 1.05 -1.43 0.21 0 -8.18 2.59 -2.34 0.74 -3.34 -2.13 2 -1.71 1.56 0.52 2.13
-0 8.18 -0.7 0.11 -1.52 3.39 -2.21 1.8 -1.97 2.15 -1.29 -0.5 -2.69 2.19 -2.28 1.84
--1.74 2.35 -1.43 3.45 1.91 1.95 2.08 -1.19 1.89 1.98 2.28 1.62 0 22.48 -2.13 2.29
--2.37 1.64 -0.25 -2.17 -1.67 2.52 -1.41 3.69 -0.98 5.17 -1.78 4.32 -1.54 3.63 -0.32 3.32
--1.34 3.02 -2.28 2.67 -1.23 5.06 -2.41 3.45 -1.06 1.08 0 -541.79 -1.93 -2.63 -1.95 -2.63
--3.11 -3.69 -3.17 -3.69 -1 -1.52 -1.04 -1.54 -0.02 -0.58 -0.02 -0.61 -0.48 -1.74 -1.72 -1.91
--1.73 -1.93 -3.15 -2.82 -3.14 -2.8 -3.15 -2.75 -3.14 -2.71 -0.72 -0.48 -0.71 -0.46 -2.21 -1.71
--2.2 -1.68 -2.95 -2.36 -2.95 -2.32 2.47 2.41 2.45 2.41 -1.43 -0.87 -1.41 -0.84 -1.82 -1.17
--1.82 -1.15 1.66 1.91 1.63 1.89 2.5 2.52 2.45 2.54 2.45 2.32 2.43 2.32 2.82 2.62
-2.82 2.65 p
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-0.57 0 p
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--2.02 -2.43 p
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--0.33 2.19 0.18 2.65 -1.15 3.02 -0.31 2.21 0.17 2.67 -0.26 3.06 0.59 2.25 -0.83 2.21
--2.16 2.09 -0.83 2.21 -1.73 2.17 -0.83 3.08 -1.73 2.61 -1.28 2.63 -1.32 2.21 -1.86 1.7
--1.3 3.07 -0.37 2.68 0.07 2.28 0.54 2.71 0.07 2.71 1.5 2.78 0.59 2.73 0.97 2.75
-1.05 3.21 1.04 3.26 1.91 2.32 2.43 1.5 1.47 2.37 0.95 2.34 0.57 3.21 -0.48 3.17
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--1.43 2.71 -1.43 1.76 -0.52 2.3 -0.93 1.34 0 2.32 -1.45 2.21 -1.95 2.24 -1.46 2.28
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--0.78 2.43 p
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-2.63 0.85 3.19 0.06 2.88 -0.52 0.87 -2.26 2.8 -0.04 2.89 -0.44 2.75 0.48 1.67 -2.17
-2.61 0.96 2.78 0.04 2.84 0.07 2.13 -0.58 2.54 -0.5 2.73 0.56 3.04 -0.87 2.18 1
-1.95 1.91 2.3 1.99 2.58 1.06 3.13 0.24 0.15 -2 2.17 -0.45 0.22 2.04 1.93 -1.04
-2.52 1.08 3.25 1.37 0.95 2.23 0.7 3.21 -0.15 3.02 -0.11 3.02 0.22 3.11 0.06 3.54
-0.65 2.76 -1.28 2.71 -1.26 3.73 0.11 2.06 -1.34 1.63 0.71 2.28 -0.83 1.3 -1.43 -2.5
--1.39 -0.39 -1 0.19 0 -6.55 -1.76 -2.95 1.13 -1.21 -1.76 -0.46 -0.36 -1.43 -1.98 -1.24
--2.69 -0.12 -1.3 1.66 2.07 1 0.78 1.22 3.67 1.97 2.21 1.56 0 6.55 -2.3 0.41
--1.17 -2.3 -1.52 -2.41 -1.75 -0.46 -1.52 -1.41 -2.43 0.39 -1.65 1.58 -3.64 0.61 -2.62 -0.16
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--0.79 1.56 2.13 2.11 0 1.75 -1.56 -0.33 0.37 1.54 -4.34 -0.91 0.93 2.14 -2.2 1
--0.11 1.98 -2.05 0.52 -0.48 0.11 0 -16.34 0.33 -1.39 2 1.39 0.02 -1.65 -2.93 -0.8
--2.97 -0.72 -1.72 0.74 -2.36 0.09 -2.23 -0.39 -0.15 2.37 2.73 0.02 0.56 -0.89 2.13 0.91
-2.04 -0.33 2.56 0.65 0 16.34 -1.93 0.39 -0.14 1.91 1.82 -1.08 0.93 0.71 -1.11 1.23
--1.22 3.17 p
-0.31 1.52 -3.39 -1.17 -0.15 3.37 1.21 2.19 2.46 0.52 2.41 0.52 2.78 0.61 2.39 0.56
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--2.64 0 -1.89 1.58 -3.17 -1 2.39 -0.58 2.49 -1.02 2.13 -2.54 -2.3 0.13 1.22 -2.24
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-0.69 2.02 1.97 1.3 -3.36 -0.08 -2.28 2.04 -2.04 2.56 -1.46 1.68 -1.91 2.12 -2.08 1.11
--0.56 2.78 -0.29 3.28 -0.15 2.39 -2.36 1.07 -2.46 1.52 -2.69 1.04 -2.89 1.97 -3.54 1.91
--2.48 0.15 -1.26 1.24 -2.62 1.11 -0.31 1.82 -1.25 1.26 -0.76 2.26 -2.95 1.52 -0.07 -1.87
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-1.25 -1.28 2.32 -1.15 2.67 -1.11 3.52 0.43 -0.74 -1.96 2.28 -0.7 2.75 -1.06 2.37 -1.11
-2.39 -1.11 2.58 -1.97 -0.37 -1.99 -1.52 0.3 -0.74 1.78 -2.21 0.17 -1.93 0.7 -0.76 -1.96
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-0.98 -1.78 -0.43 -1.91 -3.1 0.11 -1.74 1.69 -2.32 0.29 -3.26 1.54 -1.48 -0.13 -1.82 2.19
-1.71 1.59 2.21 0.22 2 -0.79 2.58 0.29 3.27 0.8 2.82 1.28 0 6.59 -0.91 1.37
--0.62 1.8 -3.06 0.61 -1.43 2.15 -1.5 0.34 -2 1.2 -2.09 1.65 -2.79 -0.28 -2.34 1.17
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-0 -5.97 0.28 -2.78 0.54 -1.8 -0.54 -1.95 -0.02 -0.13 0 -3.1 2.04 -2.21 0.59 -2.26
-0.24 -2.34 -0.11 -2.36 -0.55 -2.35 -1.84 -0.13 -1.3 -1.97 -2.02 1.76 0.16 2.82 -0.24 2.8
--1.28 2.21 -0.17 1.89 1.13 -0.43 1.39 0.59 1.98 1.99 0 3.1 -0.39 -2.69 -2.36 2.2
--0.54 1.8 0.15 2.37 2.02 1.08 0.88 1.91 0 5.97 -0.31 0.04 -1.45 0.82 -2.11 0.3
--1.64 -1 -0.87 -1.95 -2.32 -1.02 -2.36 -1.52 -1.57 -1.98 -2.45 -0.56 -2.54 1.28 -2.82 0.35
--2.47 0.84 -1.72 -1.43 -2.39 -1.46 0.44 -2.75 0.5 -3.21 -0.73 -0.5 0 -10.66 2.25 -1.34
--1.43 -2.28 -1.59 1.26 -2.15 0.39 2.91 1.97 0 10.66 -1.37 -0.93 -2.5 -1.95 -2.49 -0.91
--2.15 -0.98 -2.16 -3.23 -2.18 -2.8 -1.48 -2.34 0.35 -2.34 2.23 -1.84 -2.6 -1.84 -1.55 -1.89
--0.74 -2.3 -2.25 0.02 -2.32 -2.78 -1.61 -2.32 -2.64 0.04 -2.65 0.07 -2.71 0.06 -2.67 -0.37
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--2.21 0.63 p
--2.73 -0.32 0.97 2.3 0.24 2.8 0.61 2.78 -1.82 0.11 -0.95 1.91 0.61 2.78 1.65 1.8
-0.67 3.2 0.96 2.75 0.61 2.3 -0.48 2.84 -0.17 1.84 0.57 2.3 -1.46 3.34 1.2 1.32
-2.52 0.29 1.58 2.24 3 -1.57 2.8 -0.15 3.16 0.29 3.11 -0.57 2.71 -1.04 3.56 0.82
-3.47 -0.52 2.41 -0.54 2.13 0.45 1.07 1.39 0.75 3.19 0.37 2.32 0.39 3.21 0.37 3.19
--0.98 2.32 -1.98 1.41 -0.97 1.39 0.37 1.39 -1.59 1.82 -0.65 0.96 -2.61 0.5 -2.22 1.43
--1.95 0.06 -1.58 1 -0.16 2.75 2.26 0.37 1.97 0.87 2.58 0.37 1.22 -1.84 2.6 0.39
-2.24 -0.02 -0.57 3.23 -1.21 2.75 2.23 -0.02 0.91 -2.32 1.91 0.43 2.21 -0.45 0.63 2.32
-1.55 0.87 1.89 0.5 1.56 0.89 0.26 2.3 0.58 1.82 2.13 0.95 2.43 1.43 2.08 0.98
-1.43 1.84 1.11 1.84 0.79 1.87 0.48 2.25 1.13 0.55 0.2 -2.71 1.57 -0.87 1.41 1.43
--0.11 1.37 -1.52 0.35 -0.18 2.28 1.98 1.04 3.21 0.18 1.02 1.41 2.35 0.15 1.84 -0.79
-0.07 1.8 1.28 1.46 -1.28 1.26 1.02 1.02 -1.35 1.7 -0.32 2.69 -1.84 1.21 -0.57 2.23
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-0.26 -1.76 1.89 0.18 0.29 -1.76 -1.34 -0.74 0 -2.6 1.73 -0.98 0.09 -1.74 -2.08 -0.2
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-3.35 -1.06 -0.33 -1.82 1.99 0.19 1.5 1.52 1.3 1 2.2 0.74 1.15 1.49 1.5 -1.69
--1.28 -1.02 2.15 -0.69 1.8 -0.22 2.58 1.72 2.73 0.8 1.84 2.09 2.56 1.32 2.64 0.87
-1.82 -2.5 1.96 0.33 1.41 1.2 0.2 2.38 2.08 1.79 0.29 2.86 -1.07 2.59 -0.93 3.08
-0.5 1.93 0.21 2.84 2.13 0.93 1.98 -1 1.63 -1.57 1.93 -0.02 1.09 1.65 -1.91 5.21
--1.89 0.04 -1.52 2.02 -0.78 2.19 1.45 1.74 2.23 0.98 2.47 1.04 2.95 -0.17 3.1 0.82
-0.59 1.59 1.58 2.34 3.19 -0.06 -2.18 1.8 -1.66 -0.93 -3.02 1.52 -3.19 -0.87 -2.19 -1.47
--2.21 -1.5 -2.23 -1.5 -2.47 -1 -1.2 0.13 0 -5.54 1.93 -1 -1.52 -0.93 -0.09 0.11
-0 -0.7 2.71 -0.11 -1.12 -1.35 -1.15 -1.36 -1.43 1 1 1.82 0 0.7 -0.48 0.67
-0.15 1.15 0 5.54 -1.74 0.17 -1.88 1 -2.56 0.87 -0.59 1.71 0.07 2.78 -1.41 1.63
-0 -21.66 -0.96 -1.43 0.61 -2.24 -1.28 -1.3 -1.11 2.13 0.65 1.65 2.09 1.19 0 21.66
--0.63 0.74 -1.11 2.54 0.2 2.78 1.41 2.63 1.15 3.02 1.26 2.58 0.41 2.89 1.24 1.25
--1.08 2.5 -2.7 1.17 -1.43 -0.78 -1.57 -0.37 -1.95 0 -0.37 -1.89 -1.08 -1.17 0.67 -1.21
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--1.47 2.13 p
-0.48 1.87 -1.24 1.08 0 -3.41 0.91 -2.08 -1.15 -1.39 1.02 -0.93 -1.84 -1.02 -0.66 0.07
-0 -1.26 1.76 -0.32 -0.7 -0.93 -1.61 -0.67 -1.35 1.23 1.89 0.7 0 1.26 -1.34 0.13
--1 2.63 2.04 1.3 2.02 1.3 0 3.41 -1.09 0.93 -1.52 2.56 -1.59 2.97 -1.5 2.56
--1.3 3 -1.73 1.19 -0.74 -1.84 -1.52 -0.16 -2 -2.43 -1.32 -1.87 -2.46 -1.52 -2.69 0.25
--2.73 1.17 -1.43 1.29 0.09 2.25 1.39 1.82 -2.26 -0.54 -0.67 1.73 0.85 1.86 -1.67 2.11
--0.41 2.21 -0.66 2.22 1.07 1.78 -1.09 1.71 1.98 1.89 1.69 1.85 1.61 2.32 2.71 0.63
-1.13 1.82 0.82 2.3 1.74 -1.17 1.21 2.32 1.17 2.3 1.15 3.23 1.8 1.95 0.48 2.71
-0.56 2.3 0.33 2.21 0.67 2.32 1.43 2.41 0.21 2.21 1.93 2.96 -2.52 -0.81 -2.13 -0.74
--2.04 -2.06 1.19 2.36 2.76 1.3 -1.63 1.09 1.65 1.56 1.35 1.95 0.2 -2.62 1.06 1.49
-0.7 -1.63 1.46 2 -1.37 0.2 -0.54 1.72 2.02 1.19 0.89 2.84 2.54 0.5 2.36 1.43
-0.79 2.43 1.41 1.69 2.34 -0.78 0.34 1.89 1.2 1.26 1.24 -2.91 1.09 2.17 1.52 -1.91
-0.26 3.32 2.91 -0.02 2.71 -0.55 2.58 -0.58 -1.26 -2.34 -2.64 -0.33 3.32 -0.87 2.65 0.39
-1.11 1.37 2.41 -0.13 1 -1.56 3 0.58 3.05 0.22 3.06 -0.26 3.06 -0.78 3.04 -0.7
-2.8 -0.3 2.95 -0.7 2.17 -1.65 1.78 -2.3 -0.2 -2.17 -1.37 -2.17 -2.15 -1.48 -2.87 -0.13
--2.38 -0.48 -2.24 -0.33 -2.9 0.42 -2.97 -0.14 -2.96 0.96 2.7 -2 2.54 -0.57 3.43 -1.24
-1.52 -2.41 1.24 -2.04 1.48 -2.43 0.3 -0.02 2.95 -0.29 1.43 -0.43 2.13 -0.65 2.91 1.15
--1.61 2.41 -1.72 -0.7 -2.97 1.3 -0.14 2.02 2.13 0.3 2.87 -0.34 2.37 0 2.86 0.71
--2.8 1.86 -2.5 1.52 0.63 2.34 1.19 2.11 0.14 2.23 2.34 0.57 2.08 0 -0.09 2.11
--1.93 2.25 -1.93 0.11 -1.26 2.61 -2.23 2.61 -3.3 1.02 2.93 0.42 2.08 1.13 2.05 -0.55
-2.45 -1.43 -1.82 -1.52 0.56 -2.47 2.34 0.22 2.3 -1.02 1.87 1.06 0.52 2 -2.43 2.58
-0.93 1.67 0.8 2.24 0.3 1.97 1.02 1.89 0.33 2.06 0.3 2.04 2.43 -1.95 2.84 -0.41
--1.02 1.76 1.15 1.48 2.02 0.97 -0.29 2.39 0.43 1.75 2.91 -2.25 1.52 0.59 -1.71 1.32
-0.52 1.13 -0.48 1.67 -2.47 0.54 -2.19 0.89 -2.61 -0.24 -2.06 0.28 -1 1.8 3.56 -0.3
-3.73 0.65 2 1.26 3.17 0.11 1.65 1 2.47 0.33 0.52 0.2 1.69 0.65 2.61 -0.24
-2.37 0.28 -2.23 2.41 -2.26 -0.17 -3.36 1.04 -1.98 -0.63 -1.82 1.13 -1.9 1.96 -2.85 0.76
--2.19 1.61 -0.63 2.61 -1.93 1.95 -2.75 1.78 -1.93 1.98 -1.93 1.91 -0.15 1.73 2.36 -0.37
-1.24 -1.13 2.69 1.06 2.04 -1 2.12 -1.71 2 -2 3.23 -0.2 2.97 -1.49 2.97 -1.55
-3.32 -1.93 2.95 -1.59 3.45 0.11 2 -1.91 2.45 -1.37 1.75 -2.39 1.15 -2.12 0.35 -3.15
-3.64 0.2 -0.36 2.3 -0.81 2.67 -1.93 2.15 -1.65 2.63 -3.78 1.32 -2.89 1.67 -0.67 2.11
--1.91 -2.04 -3.73 1.46 -2.84 1.75 -2.04 1.91 -2.95 0.57 -2.52 0.11 -2.54 2.21 -0.32 1.65
--1.65 1.57 p
--2.17 0.82 -2.17 -0.43 -0.76 0.84 2.73 0.33 3.26 -1.07 2.28 -1.69 3.06 -1.41 4.34 3.38
--1.91 -0.02 -2.54 -1.21 -2.95 0.48 -0.41 1.52 2.13 0.43 -0.69 1.21 -2.93 -0.86 -1.09 1.61
-2.04 0.32 0.61 1.3 2.21 0.8 3.17 0.37 -0.39 2.09 -3.04 0.06 -1.78 -1.36 -3.21 1.17
--3.97 0.74 0.28 2.23 0.15 2.39 -0.48 2.19 -0.06 2.37 -2.87 0.11 -2.23 0.71 -1.98 1.65
--1.96 1.9 -1.39 2.56 -0.97 2.04 -2.17 1.61 0.04 1.69 -1.8 2.73 2.3 -0.65 -1.43 3.26
--2.21 -0.29 -0.3 2.21 -3.43 0.2 -3.19 1.72 -2.64 1.63 1.69 2.02 2.86 -1.91 -0.52 1.85
-0.05 1.58 3.8 -1.13 -0.5 1.54 -1.84 0.33 -0.57 1.52 -0.17 1.71 0.54 1.43 1.63 1.34
-2.61 0.59 3.43 0.08 2.88 -1.28 3.64 -1.74 2.89 -1.65 3.5 -1.75 1.65 -1.58 3.06 -1.02
--0.44 1.48 -1.64 1.73 -1.81 1.82 -1.36 -0.89 -2.04 0.87 0.63 1.32 0.63 1.11 -0.59 1.32
--2.67 -0.32 -0.98 -1.65 -1.41 0.59 -0.17 1.58 2.56 -0.52 3.38 1.25 -1.89 1.48 -1.28 1.37
-0.13 1.82 -1.11 1.84 2.82 0.07 -0.17 2.13 -1.35 2.73 -1.82 1.65 -1.58 -1 -2.34 -0.15
--1.8 2.28 -0.7 2.9 -0.86 2.3 1.47 2.32 3.41 0.37 3.49 -0.37 2.17 1.63 1.21 1.87
--0.28 1.55 -3.04 0.49 -2.84 -0.34 -2.91 -0.3 1.08 1.93 -0.41 1.52 -2.3 0.26 -1.78 0.87
--0.39 1.41 -3.55 2.17 -2.28 2.08 -1.33 -1.56 -1.17 -1.15 -2 -0.13 -2.32 1.59 -0.87 -1.37
--2.34 1.93 0 -46.89 1.56 -1.76 0.43 -2.08 1.98 -1.71 -0.79 0.18 0 -31.4 2.82 -1.63
-0.37 -2.21 0.13 -2.41 -0.45 -2.06 0.54 -2.58 0.41 -2.5 1.37 -2.3 0.98 -2.56 1.25 -2.3
-1.24 -2.34 1.09 -2.34 1.36 -2.17 2.37 -2 2.78 -1.67 2.82 -1.02 3.43 0.19 -0.17 -1.49
--2.61 -1.37 -2.87 -0.93 -1.34 0.15 0 -10.07 3.3 -0.21 0.91 -1.74 -1.34 -2.02 -2.56 1.89
--0.3 2.08 0 10.07 -1.65 0.2 -3.54 0.5 -2.3 2.02 0.28 2.02 -1.93 1.11 -1.43 2.64
-0.11 1.98 -2.21 0.8 -0.8 2.56 -1.97 2.91 -1.67 1.2 0.5 2.43 -0.65 1.48 -0.79 2.11
--0.08 2.78 1.66 1.75 0.61 2.32 -1.29 1.74 -0.26 2.3 1.89 0.71 0 31.4 -2.11 0.48
--3.55 0.84 -3 0.7 -1.37 0.93 1.37 1.39 2.06 1 3.41 0.05 0 46.89 -0.13 0.13
--2.04 1.65 -1.82 1.5 0 -3.17 2.75 -2.15 0.33 -1.65 -2.32 -0.41 -0.84 0.34 0 -0.78
-1.41 -0.46 -1.46 -1 -1.21 0.8 1.26 0.66 0 0.78 -1.55 0.63 0.05 2.34 1.58 0.89
-0 3.17 -0.24 0.2 -1.73 2.25 -3.15 1.61 -1.88 1.71 1.75 1.68 -0.35 1.39 -1.88 0.84
--0.8 1.56 1.32 1.07 -2.71 0.71 -0.18 0.06 0 -21.09 2.93 -0.3 0.39 -1.21 3 -0.91
-2.57 -0.78 1.22 -1.32 -1.43 -2.08 -3.04 -1.02 0 -38.75 3 -0.67 2.84 0.17 0.74 -1.41
--1.04 -1.34 -1.02 -1.74 -2.87 -0.43 -1.21 -1.54 -2.84 -0.17 -2.84 1.5 -2.88 0.67 -2.32 1.91
-1.67 0.5 1.65 0.72 1.76 -0.46 2.23 0.32 1 1.3 2.14 0.67 0 38.75 -0.91 -0.3
--3.19 0.69 -0.5 2.82 -3.4 -0.33 -0.09 1.97 -1.04 0.61 -0.72 1.28 1.15 0.74 3.06 0.15
-0 21.09 p
--2.24 0.87 -3.75 0.67 -2.91 1.35 0 -17.77 2.08 -0.96 1.82 -2.58 -1.02 -2.13 -0.57 1.13
--2.62 1.74 -2.2 1.78 2.5 1.02 0 17.77 -0.24 0.11 -2.84 1.28 -0.91 1.11 0 -96.24
-2.82 -0.74 0.28 -1.35 -1.32 -0.67 2.61 -1.3 0.3 -0.93 -1.84 -1.13 0.69 -1.89 -1.19 -1.06
--0.89 1.87 1.39 1.08 -1.76 1.35 0.7 2.02 -1.17 1.02 -0.61 1.74 0 96.24 -0.33 0.39
-0.46 1.71 2.52 1.09 -2.23 1.76 -4.11 1.13 -1.3 0.22 0 -105.01 2.52 -1.09 1.15 -1.69
-1.61 -0.16 -0.43 -1.8 -0.87 -0.24 0 -1.54 1.84 -0.16 -1.15 -1.17 -0.7 1.33 0 1.54
--1.39 -0.39 -0.85 1.09 1.06 0.93 -1.67 1 0 -5.14 0.46 -1.59 1.37 -1.02 -0.89 -1.11
--1.71 -0.33 -1.15 0.95 -1.07 -0.67 -1.52 -0.09 0.34 2.54 1.46 -0.04 0.93 -0.74 0.63 2.04
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--2.3 -0.61 -2.16 -0.98 -2.61 1.06 0 -127.67 0.84 -1.37 -0.2 -2.48 -1.41 -1.73 -3.69 -0.09
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-0 2.63 -1.82 0.93 -1.46 2.02 -1.13 -1.32 0.67 -1.89 -0.11 -2.76 -0.11 -2.62 0.39 -2.5
--3.45 2.08 -2.34 2.09 -1.08 2.13 1.43 1.59 -2.46 -0.37 -2.54 2.08 -1.56 2.95 -0.48 2.04
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-2.28 -0.29 2.43 0.3 0 127.67 -0.22 0.09 1.09 0.84 2.49 -0.41 0.39 1.3 -2.49 1.11
--0.18 1.37 -2.52 0.04 -2.02 -0.73 0.58 -1.79 -0.84 -2.25 -3.71 0.79 -3.52 0.69 -3.57 0.67
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--4.95 0.09 p
--3.28 1.24 -3.91 1.09 2.09 1.3 1.19 1.46 3.69 0.48 -0.65 1.87 1.63 1.45 0.41 1.67
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-4.64 -0.17 3.1 0.78 3.82 0.39 3.32 0.98 3.13 0 3.45 0.93 3.52 0.82 3.93 0.74
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-4.17 -0.78 3.64 0.05 2.28 1.13 1.08 1.2 0 136.98 -4.62 0.78 -7.16 1.13 -7.14 1.04
--7.12 0.95 -7.07 0.89 -0.39 0.04 0 -151.78 -2.89 -1.15 -2.93 0.11 -0.04 0.98 5.86 0.07
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--2.5 0.09 -0.26 0.02 -2.25 0.07 -5.05 0.15 0 0.11 -2.35 0.06 -25.15 0 -4.38 -0.11
--1.47 -0.05 0 -122.91 -0.85 -0.89 -2.6 0.41 3.45 0.48 0 122.91 -4.19 -0.11 -5.64 -0.24
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--4.51 -0.43 0 -129.08 -2.02 -3.02 -2.52 -0.8 -0.56 0.78 1.41 0.85 3.69 2.19 0 129.08
--0.39 -0.04 -5.64 -0.55 -0.85 -0.08 0 -131.84 -1.84 -1.61 0.8 -1.02 -3.91 -0.89 -0.78 0.91
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--2.61 -0.63 p
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--2.14 1.79 -4.49 0.95 2.71 1.73 -0.5 2.87 -3.49 0.8 3.54 1 2.5 1.32 -1.3 1.17
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-0.76 0.89 p
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-1.39 2.07 3.34 1.93 1.84 1.7 1.15 2.34 2.56 1.82 1.37 2.61 1 1.97 1.85 1.24
--0.76 1.97 0.43 2.63 -1.45 1.56 -1.76 1.61 -2.17 0.54 -0.18 2.43 0.83 1.68 1.82 -0.09
-0.21 1.93 0.79 1.43 2.11 -0.43 1.58 -1.13 0.41 2 1.89 1.19 -1.04 1.02 1.17 1.88
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--0.33 2.04 2.11 1.61 3.41 0.78 0 74.74 -2.97 -0.41 -2.06 0.43 -2.21 -0.91 0 -71.27
-2.38 -0.76 3.08 0.15 0.02 -1.13 -3.08 -0.82 -2 -1.07 -0.37 -1.8 -1.61 -0.93 -2.91 -0.11
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-1.78 -0.48 -3.02 -1.09 1.23 1.56 0 67.27 -2.17 0.15 -1.24 -0.57 0 -61.07 1.04 -0.61
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--2.95 0.35 p
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-0.29 -0.91 -1.89 -0.16 0 -7.62 1.02 -1.87 -0.17 -2.47 -1.56 -0.41 -1.54 0.63 0.8 2.13
-1.45 2 0 7.62 -0.35 -0.02 -2.56 -0.65 1.07 1.41 3.45 0.33 0 11.24 -1.65 -0.07
--1.91 1.78 2.28 1.3 -1.71 0.96 -1.37 1.54 1.65 1.35 0.65 1.3 3.3 0.61 0 38.13
--1.91 -1.04 -3.28 -0.67 -1.8 -1.5 -1.04 -0.65 0 -38.45 1.63 -0.96 0.67 -1.49 -2.23 0.71
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-2.45 0.21 0 13.52 -1.61 -0.25 0 -4 0.07 -1.09 -2.04 -1.17 -2.78 -1.26 2.88 0.09
-1.78 -0.63 -0.48 -1.91 -2.17 -1.83 -2.61 -0.28 -2.9 -0.52 -3.45 0.17 0.28 2.73 4.04 1.43
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--2.63 0.33 -2.8 0.13 0 -1.69 2.26 -0.5 -2.52 -0.91 0.26 1.41 0 1.69 -0.15 0
--0.09 1.52 1.23 2.54 -0.8 1.45 -1.3 1.3 -0.13 1.37 1.28 1.54 1.79 0.5 0.58 -1.61
-2.8 1.04 -1.24 1.34 1.78 1.17 1.76 1.57 0 38.93 -1.04 -0.23 -2.7 -0.59 -3.08 -1.91
--3.58 -1.06 -3.06 -0.67 0 -21.86 2 -1.28 2.3 -1.41 3.04 -0.93 4.32 0.13 -0.61 -2.32
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-0 -47.16 1.15 -1.33 0.48 -1.82 -0.63 -1.8 -2.35 -1.46 -1.97 -0.58 -0.31 2.26 -1.54 0.89
-0.24 2.04 2.65 1.46 2.28 0.35 0 47.16 -0.76 1.8 -1.02 2.15 -3.95 1.04 -2.41 1.65
-0.59 1.78 -0.2 2.15 4.58 0.55 4.19 1.54 0 21.86 -0.54 -0.14 -3.84 -1.47 2.26 -0.87
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--0.63 1.63 -1.37 1.74 1.32 0.06 4.45 -1.97 4.97 -0.81 3.91 0.52 -1 2.34 -3.26 1.7
--4.88 0.78 -4.91 0.83 -3.66 1.39 3.04 -0.22 4.75 -0.54 4.66 -0.37 1.02 1.15 -5.04 1.21
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-0.37 1.3 2.37 0.93 2.38 0.96 3.09 -0.24 -3.64 1.41 -2.65 1.98 3 0.39 3.75 0.04
-2.54 0 p
-3.39 -2.13 1.13 1.2 1.15 1.24 0.7 1.47 1.34 1.17 -0.43 1.5 -2.89 2.19 -3.58 1.96
--3.12 1.02 -4.1 2.32 -4.34 1.73 -3.8 1.46 -4.06 2.4 2.02 0.68 -1.15 1.8 -2.89 0.7
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-0 1.61 3.02 -1.73 0.78 0.73 3.49 -1.09 -3.25 2.24 0.11 1.56 -2.78 1.3 -0.33 1.93
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-3.04 1.07 p
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--1.15 -2.04 p
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--2.99 0.26 p
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--2.52 0.89 -2.65 1.52 S
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--1.24 1.13 1.37 2.54 -0.24 1.63 1.76 0.63 0.87 1.52 2.15 1 2.25 0.89 0.76 0.87
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--2.39 -1.52 -1.13 -2.52 0.38 -2.28 2.64 0.52 2.91 0.63 2.25 1 S
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-0.63 -1.76 2.25 -1 2.39 -1.78 2.64 0.76 2.52 0.76 2.39 1 S
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--1.89 1.26 1.49 2.15 -2.12 2.13 3.38 0.13 -0.13 2.02 -1.86 2.02 0.63 2.13 -2.15 2.14
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--2.91 -0.99 -2.62 0.24 -2.28 -0.74 -3.02 0.74 S
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--0.76 1.64 -1.13 1.26 0.26 2.39 2.13 0.76 0.39 2.26 0.87 2.52 0.5 2.28 -2.5 1.5
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-0.63 3.02 1.78 2.54 S
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-0.38 2.91 -1.26 2.39 -1.13 2.39 1.39 3.91 0.11 2.52 0.39 2.28 1.99 2.78 1.15 3.26 S
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-3.54 2.65 0.24 1.89 -0.87 1.25 2.52 2.02 3.25 1.25 3.78 1.39 2.78 0.5 2.88 0.5
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--0.11 -2.78 3.25 -0.73 S
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--4.02 -2.52 -2.52 -3.41 S
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--0.62 2.13 1.39 3.41 S
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--2.75 0.37 1.76 2.02 2.26 2.02 -0.24 2.39 -0.13 2.52 1.88 2.14 1 2.15 2.15 -0.52
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--2.38 1.13 1.26 1.39 3.78 -0.39 -2.52 1.89 2.14 1.26 3.75 0.26 4.8 1.39 -2.91 1.39 S
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--0.63 1.65 -2.26 0.87 3.77 1.39 3.64 0.89 3.65 1 3.02 1.88 2.64 0.63 3.28 0.63
-2.25 1.52 1.89 1.39 3.28 0.76 2.75 1.5 4.28 0.89 2.9 1.39 2.52 1.13 3.78 -0.26
-4.02 1.65 2.14 -0.39 4.02 0.52 1.26 2.52 3.28 1.26 2.13 2.52 2.65 1 1.65 2.28
--0.39 1.89 0.39 1.63 3.26 1.52 3.01 1 -0.5 1.91 -3.52 0.74 -4.41 0.26 -2.65 1.52
--3.89 0.37 -3.4 0.76 0.26 1.52 4.9 1.25 1.37 -1.39 2.64 0.63 2.78 1.63 2.89 1.65
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--2.52 -1.39 -0.5 1.63 -2.88 0.89 -0.76 1.75 4.14 1.63 1.52 2.02 3.91 0.13 2.13 1.52
--0.24 1.13 1.26 2.38 0.24 2.65 -3.91 0.76 S
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--2.64 0.89 -1.89 -1.26 -5.77 -1.89 -4.54 0.37 0.13 -1.26 -2.89 -0.76 -2.02 -1.12 -2.02 1.75
--1.52 1.79 1.52 2.02 1.39 2.13 2.76 2.41 0.89 2.26 4.01 1.52 3.41 2.02 1.52 2.13
-4.02 2.02 3.78 2.64 -1.52 0.5 -4.4 -2.52 -3.12 -2.15 -3.41 -1.63 S
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--3.91 -0.39 -4.41 -1.5 S
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--3.02 -1.02 3.02 2.14 -0.87 1.39 -3.52 -0.26 -0.76 -1.26 -2.52 0 S
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--2.26 -1.26 -1.26 -1.39 -1.88 0.26 -3.52 -0.89 -3.15 -1.26 -3.02 -1.76 -0.39 -1.89 -2.52 0.89
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--2.25 -0.26 -3.78 -2.89 -2.64 -2.64 -3.15 -2.78 S
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--3.51 -1.49 -2.78 -1.89 -3.65 -2.02 -3.26 -1.02 -2.9 -0.24 -1.76 -0.76 -2.26 -2.02 -2.64 -2.15
--2.26 -0.99 -2.91 -1.52 -2.89 -2.64 -2.38 -2.52 -2.02 -0.76 -1.39 -2.52 1.78 0.89 -1.15 -1.76
--0.87 0.11 -3.15 -2.52 S
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--0.24 -1.63 -2.52 -3.67 -2.78 -3.02 -3.28 -3.02 -3.39 -3.78 -2.65 -2.78 -2.13 -2.78 -1.52 -1.12 S
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--1.89 -3.28 -2.52 -2.14 -1.52 0.63 0.5 3.14 -1.89 -4.01 -1.87 -2.65 -1.02 -2.52 -1.39 -3.28
-0.13 -2.02 -1.76 -3.41 -1.26 -3.78 -2.64 -3.91 -2.75 -2.89 -2.02 -0.76 -0.99 -4.66 -1.52 -3.91
--1.89 -4.41 -1.39 -4.3 S
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-1.65 3.52 1.75 1.89 2.65 4.43 2.63 3.52 2.64 5.16 2.65 4.17 1.75 3.78 2.89 3.41
-2.4 3.78 2.39 4.14 2.52 3.66 1.5 3.15 2.02 2.88 2.52 1.65 2.52 2.76 2.65 2.41
-2 1.25 -1.63 -3.9 0.37 -1.13 -1.49 -2.78 -1.02 -2.64 -2.52 -2.02 -2.88 -3.64 -2.02 -2.02
--2.38 -3.65 -2.89 -3.8 -2.64 -4.91 -2.65 -5.03 -0.24 -3.04 -2.78 -2.76 -2 -4.93 -1.65 -3.02
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--1.13 -3.77 -2.14 -4.93 S
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--0.89 -2.28 -1.62 -0.13 -1.79 -4.77 -1.62 -4.93 -0.13 -4.14 -0.5 -4.29 -1.26 -4.14 0.26 -4.54
-0.87 -2.91 0.5 -1 -0.5 -3.91 -0.5 -5.16 0.5 -3.14 0.5 -3.02 0.13 -3.66 0.89 -2.52
-0.24 -3.65 0.26 -3.53 S
-2034.7 1445.21 1.13 -2.76 0.89 -3.41 1 -3.14 2.39 -0.52 2.28 -0.11 1.26 -1.78 0.87 -2.12
-0.63 -2.52 0.26 -3.17 -0.13 -2.63 -0.12 -4.29 0.13 -3.64 0 -3.41 0.63 -3.41 1.13 -2.75
-1.52 -1.65 0.76 -3.41 0.11 -2.52 1.39 -1.26 0.89 -3.38 1.25 -1.26 2 -1.91 1.26 1.15 S
-2056.21 1391.3 -0.11 -3.78 -1.15 1 0 -3.91 0.26 -3.27 0.37 -4.14 0.52 -3.41 0.63 -3.54
--1.02 -2.89 -1.26 -2.65 -0.5 -3.27 1 -1.62 0.26 -1.52 2.02 1.26 0.13 -3.02 1.37 -4.04
-0.5 -3.14 -1.37 -3.15 1.75 -2.02 0.38 -2.41 1.25 0.39 1.76 -1.89 1.52 -2.52 0.38 -2.91
-1.89 -1.39 -0.74 -4.14 1.75 -0.5 2.52 0.37 -1.02 3.28 0.26 2.52 2.02 0 1.76 0.89
-1.89 2.13 1.26 -0.87 1.13 -2.78 0.24 -3.54 1.26 -0.74 -1.63 -1.65 0 -4.54 1 -3.91
-0.63 -3.65 -1 -2.52 -0.76 -4.8 -0.87 -3.41 -0.39 -3.52 -1.37 -3.02 0.87 -3.04 -1.88 -2.13
--1.89 -3.41 -2.39 1.39 S
-2069.42 1291.91 -2.15 -2.65 -0.11 -3.14 -1.89 0.5 0.24 -3.4 -2.39 -0.5 -3.14 -0.76 -1.13 -4.54 S
-2332.23 1714.41 -1.62 -2.89 -1.26 -3.04 -2.91 -1.88 -0.5 2.02 -0.13 1.52 -3.12 1.13 -1.89 -3.02
-1.89 -0.39 1.13 -1.89 -2.39 -0.24 -2.78 1 1.63 -3.41 3.78 1.39 -2.75 -3.15 2.39 -0.63
-1.89 -0.76 0.87 2.65 2.15 2.78 0.89 -1.52 0.74 -1.5 2.14 2 -0.63 2.54 0.5 2.52
-0.26 2.26 -0.26 2.52 S
-2289.46 1696.53 -3.39 -2.65 -0.76 -1.76 0.38 -1.89 -0.87 -1.26 1.99 -0.13 0.52 -1.75 0.5 -1.65
-3.14 -0.37 1.13 -1.64 -0.13 -2.39 1.89 1 -0.63 -2.65 1.63 2.54 0.52 1.63 -0.52 1.75 S
-2294.86 1685.3 -1.5 0.52 -1.89 0.74 -0.13 1.52 1.89 1.89 1.89 1.02 1.13 2.63 -2.02 -0.74
--2.75 -1.65 0.13 1.65 -2.14 -0.13 -1.26 1 1.26 2.78 S
-2267.32 1679.38 -1.13 -2.52 2.13 -0.37 0.63 -1.65 -0.5 -2.52 0.76 -1.89 1.39 1.78 0.24 1.5
-2.02 1.88 0.37 1.26 -2.63 0.63 -1.39 0.89 -1.89 1 S
-2248.57 1652.93 1.63 -1.76 2.78 1.02 2.75 0.99 1.65 -0.89 3.39 2.41 -2.76 0.13 -2.28 0.11
--2.75 -1.89 -2.15 -0.13 -2.26 0 S
-2229.45 1634.18 -2.02 -1.91 -3.15 -2.26 -1.39 -2.28 -2 -1 0.37 -2.14 -3.14 -2.02 1.26 -0.87
--2.64 -1.13 -2.63 -1.15 -2.65 -1.5 1.5 -1.15 4.29 1.64 S
-2217.25 1618.42 2.26 2.52 3.52 3.27 3.02 2.26 3.04 2.54 3.02 2.26 0.24 1.89 -0.12 1.65
--2.76 -0.63 S
-2227.3 1638.96 -3.14 -2.39 1.78 -0.5 -1.52 -2.02 -1.63 0 -3.28 -1.52 -1.39 -2.52 S
-2218.12 1630.01 -2.39 -3.28 -2.15 -1.13 -1.87 -2.02 -2.14 -0.89 0.89 -2.02 2.5 2.14 1.39 1.76
-2.02 1.89 2.78 0.89 0.24 1.75 -1.26 0.89 S
-2218.12 1630.01 3.64 2.39 1.76 0 2.15 1.02 1.89 2.88 -0.26 2.65 S
-2193.73 1589.46 0.63 -1.52 2.26 -1 -1.89 -2.91 2.26 -1.26 2.39 -1.12 3.41 -0.39 0.76 -1.37
--2.91 0.5 -1.89 -1.39 1.39 -1.63 -1.63 -3.04 1 -1.89 2.65 -1.26 1.76 -1.89 -1.39 -1.12 S
-2202.52 1568.17 0.76 -1.39 1.89 2.52 2.38 1.52 0.89 2.02 1.75 1.5 -1.13 2.02 1.26 2.52
-2.26 3.04 -1.13 2.26 0.5 3.15 -2.26 -0.37 -2.28 0.76 -2.39 -0.39 -2 0.13 -1.65 1.39
--2.52 0 -2.65 0.38 -2.5 0.26 S
-2187.43 1568.29 3.02 -0.62 -2.64 -1.15 -1.89 -1.26 -3.52 -2.12 -2.39 -1.39 -2.14 -2.14 -3.02 -2.65
--2.15 -3.41 0.76 -1.26 1.52 -0.5 2.26 0.89 3.28 2.13 2.52 2.65 1.89 2.41 2.25 1.76
-2.65 1.26 2.52 1.39 2.52 -1.02 3.25 1.26 0.76 -1.37 -0.13 -2.02 0 -2.15 -1.25 -2.14
--3.02 -2.65 -3.52 -0.87 -1.75 -1.65 2.52 0.39 1.75 -0.63 -2.14 -3.04 -2 -3.02 S
-2189.32 1545.36 2.63 -0.76 2.91 2.78 3.02 1.63 2.39 1.52 1.39 2.02 -1.02 -3.54 0.52 -3.38
-2.26 0.63 2.02 4.02 1.49 3.67 -0.87 3.28 -0.76 2.13 -1.12 1.78 -0.76 2.26 -0.89 1.39
--1.37 -2.02 -1.52 2.39 -0.26 1.52 -1.12 1.02 -2.52 2.12 -0.37 0.76 -2.25 -0.5 -2.91 -0.89
--2.75 -0.87 S
-2202.15 1559.85 0.37 -2.52 0.13 -2.14 2.39 1.52 -1.5 1.13 -1.39 2.02 S
-2180.51 1542.08 0.13 -3.14 1.25 -1.63 1.5 -1.26 2.52 -0.52 2.02 -0.76 2.65 -0.62 2.52 -0.37
-2.49 0.5 -1.49 1.78 -1.39 1.89 -1.89 -0.39 -0.5 1.65 -1.62 1.13 -2.28 -0.62 -2.63 0.75
--1.15 1.63 -2.13 0 S
-2195.59 1538.8 0.63 -1.76 2.28 -1 1.26 -1.52 0.87 -2.02 1.78 -1.13 2.26 -0.89 2.25 2.65
-1.89 1.13 -2.02 0.76 -2 -0.37 -1.12 2.13 -1.39 1.02 -1.89 1.26 -2.02 0.87 -2.78 -1.13 S
-2014.2 1307.01 -1 -3.52 0.87 -2.91 -1.5 -0.87 1 -2.15 1.76 1.52 -0.37 3.91 -0.75 4.02 S
-2143.54 976.97 1.36 -3.27 1.39 -2.15 2.02 -4.28 2.52 -0.52 -0.76 2.64 -2.02 2.15 -0.12 2.15
--1.63 2.12 -2.75 1.15 S
-2209.31 912.59 -0.87 -0.63 -1.52 0.39 0.5 -1.52 -1.5 -0.13 2.02 -2.89 1.63 -0.89 1.39 1.26
-1.13 -0.89 -1 -1.75 2.89 -2.78 -1.39 0.39 -3.15 2.65 1.13 -2.9 -1.89 0.75 -3.14 0.63 S
-2205.54 904.28 -2.5 1.26 -4.3 1.52 -3.25 1.13 -3.28 1.25 1.89 -1.39 2.75 -1.26 1.88 -0.24
-0.39 -1.65 2.76 -1.13 1.39 -1.39 1.89 0.26 2.38 -1.89 1.39 0.24 1.39 -1.39 4.14 -1.5
-2.89 -0.62 0.52 1.13 2.26 -1.75 2.39 -0.63 1.52 0.63 3.26 -1.02 -2.63 2.15 2.39 0.37
-1.26 1.65 2.52 0.37 0.99 0.5 -0.99 1.39 -2.15 -0.24 -2.25 0.74 -2.65 1.29 -3.28 1.13
--3.38 1.63 -2.28 1.76 -1.89 1.91 -3.64 2.13 S
-2230.95 918.88 4.04 -2.12 0.76 1.39 1.49 -0.39 1.65 -1.25 1.89 0.5 0.11 1.39 2.02 1.15
--1.26 1.75 -2.75 0.76 -1.76 -1.02 -3.04 0.89 -2.52 -0.76 2.52 -1.62 S
-2234.09 919.54 -0.11 -1.52 -3.04 0.87 S
-2323.54 910.83 3.65 -1.13 3.27 -1.15 3.28 -2 -0.26 1.63 -2.26 1.25 -3.54 1.13 -4.14 0.26 S
-2152.45 1304.12 2.65 -1.12 1.5 1 0.75 3.14 -3.14 0.76 0.63 -0.89 -0.63 -2.52 -1.76 -0.37 S
-2124.16 1334.36 0.87 -2.52 -0.11 1 -0.75 1.52 S
-2101.89 1394.45 1.13 -0.89 0.24 -3.02 1.26 -1.76 1.78 0.24 1 -1.49 1.13 -0.89 0.39 2.52
--1.15 2.15 -1.5 2.02 -1.65 1.76 -2 0.13 -0.62 -0.76 S
-2097.09 1430.73 -0.24 -1.39 -0.76 -0.5 0.63 -0.89 1.39 -0.37 0.5 2.13 -0.26 1.75 -1.26 -0.74 S
-2091.82 1436.63 2.02 -2.13 1.75 1.63 1.76 -1.89 1.89 0.5 1.89 0.52 S
-2101.13 1435.27 1.26 -2.02 1.89 -2.52 -2.15 0.5 0.13 -2.52 1.39 -2.02 2.39 -2.28 0.36 -2.52
-1.15 -1.63 1.13 -2.52 1.89 -0.89 0.11 -1.52 -1.13 -2.75 0.75 -3.54 2.65 -2.02 -0.39 -2.65
--2 -0.5 -1.65 -0.87 2.39 -1.89 2.15 -0.76 1.75 -1.39 1.52 -1.88 1.89 -1.39 1.63 0.13
-2.14 -0.76 0.11 1.26 -0.86 0.63 -0.26 2.89 -1.63 1.9 -1.39 0.38 1.52 2.25 -1.26 1.65
--1.52 2.02 -0.76 3.41 -1 2.13 -0.63 2.65 -0.89 3.02 -1.13 2.41 -1.63 1.39 0 3.02
--0.89 2.26 -0.74 2.28 -1.65 1.39 -1 2.52 -1.52 1.5 -2.26 0.52 -1.75 1 -1.89 1.02
--2.39 0 -1.89 -0.52 S
-2095.09 1438.02 -1.15 -2.02 -2.13 0.63 S
-2116.34 1385.11 1.65 -3.77 1.13 0.63 1.89 -1.39 1.39 -1.5 1.76 -0.52 1.75 -1.89 0.37 -4.14
-2.39 1.76 0.63 1.65 2.41 -0.26 -0.63 -1.52 2.13 -0.76 2.78 -0.37 1.99 -1.13 0.52 -2.91
-2.38 1.78 -0.75 3.65 -2.89 2.88 2.26 0.52 -2.26 1.5 0.11 2.41 -2 2 -1.76 1.65
--2.52 1.76 -1.65 -0.24 -1.63 3.02 -2.15 1.52 -1.89 -0.63 1.78 -1.29 0.11 -2.75 -0.86 -2.02
-0.5 -3.64 -2.26 -0.52 -1.89 1.25 -1.26 2.15 -1.65 1.76 -1.89 -0.64 S
-2144.4 1364.97 1.52 -1.39 1.88 -0.52 1.76 -0.87 1.5 1 -0.73 2.28 -2.41 1.26 -2.39 1.39
--1.13 -3.15 S
-2163.29 1342.67 -0.39 -2.15 1.26 1.15 S
-2164.15 1341.67 1.13 -0.52 -0.24 1.89 -0.89 -1.37 S
-2164.15 1341.67 -0.86 1 S
-2163.39 1332.59 0.89 -2.78 0 1.13 -0.89 1.65 S
-2124.02 1437.02 -0.89 -2.28 -1.63 -0.74 0.26 -3.9 -0.89 -3.67 1.75 1.52 0.26 2.65 1.13 2.02
-0.89 3.64 -0.89 0.76 S
-2126.54 1398.85 1.89 -1.26 1.76 2.02 -1.39 -1.02 -0.87 1.39 -1.39 -1.12 S
-2127.04 1448.25 0.26 -2.02 1.99 -0.39 1.02 -0.87 -0.26 -1.52 -0.24 1.26 -3.04 1 0.26 2.54 S
-2132.21 1445.07 0 -3.64 -2.28 -2.39 1.89 2.75 0.39 3.28 S
-2130.19 1434.75 0.76 -3.91 -1.52 -2.76 S
-2130.95 1426.82 -0.39 -3.9 S
-2128.93 1419.88 -0.76 -6.04 S
-2129.82 1412.2 1 -2.88 -2.39 -1.26 S
-2132.83 1406.54 1.26 -1.52 S
-2133.07 1400.37 2.15 0.37 1.63 -2.89 S
-2110.68 1443.82 2.02 -0.87 S
-2168.18 1486.92 1.89 -0.26 1.76 1.39 S
-2196.86 1510.46 2.14 -1.26 2.02 -1.25 2.88 -0.37 -0.13 1.63 -2.13 0.39 -1.65 0.87 -1.89 1.02
--1.25 -1.02 S
-2261.66 1534.14 0.5 -2.63 -0.37 -1.65 0.76 -2.02 1.37 -1.63 1.52 -1.12 0.63 2.25 -0.63 1.76
--0.76 1.89 -1.39 1.78 -1.63 1.38 S
-2248.57 1518.4 -0.13 -2.02 0.63 -2.38 1.26 -3.04 1.39 1.65 2.39 0.23 -2.39 1.16 -1.62 1.25
--1.02 2.02 1.26 1.76 -1.76 -0.64 S
-2294.75 1623.72 1.25 -1.52 3.39 -0.37 0.37 0.24 -0.5 1.26 -1.76 0.89 S
-2297.5 1624.21 -2.75 -0.49 S
-2299.13 1617.17 -3.52 -1.76 -1.13 -1.64 3.02 0.63 2.52 1.13 -0.89 1.65 S
-2263.78 1595.38 1.26 -1.02 -3.12 -0.13 0.73 -1.26 1.89 0.26 -2.38 -1.65 3.64 1.65 1.02 1.52
--3.04 0.63 S
-2242.77 1587.43 -0.11 -2.14 0.11 -2.26 1.89 2.26 -0.11 1.39 -1.78 0.76 S
-2267.19 1514.75 -1.12 -2.4 2.75 -0.5 2.02 -2.02 2.26 -1.39 2.15 -1.39 1.63 -1.5 -1.13 -1.78
--2.39 -0.37 1.39 -1.52 3.38 1.65 1.52 -0.26 1.25 -1.26 -2.64 -2.12 2.52 0.37 -1.5 -2.15
-1.86 -1 2.15 2.39 2.25 2.28 -1.75 0.37 2.52 2.14 -1.25 0.14 -2.52 -1.52 -0.24 1.26
-1.76 1.39 4.02 1.26 -2.52 0.87 S
-2285.54 1507.68 0.39 2.02 3.02 1.39 -0.76 1.65 -2.02 1.13 -2.26 0.76 -0.37 2.64 2.13 0.5
--1 1.89 -3.41 -0.39 2.91 1.91 2.13 1.13 3.15 1.63 2.64 2.14 -1.39 0.76 -2.75 0
--2.28 -1.02 -2.26 -1.63 -3.15 -1.76 -2.88 -2.41 -3.41 -1.63 -2.52 -1.39 0.5 -1 -2.63 -0.76
--2.14 -0.5 S
-2301.41 1635.05 0.87 -2.65 -3.02 -1.62 1.13 -1.52 3.15 0 2.52 -0.24 0.63 -1.39 -0.87 -2.29
--1.26 -2.64 3.39 -0.37 0.63 2.64 2.15 2.13 1.39 2.41 1.26 3.15 1.76 2.88 3.02 2.02
--3.28 0.63 -2.76 -0.63 -3.78 -1.26 -3.64 -2.12 -3.28 0.87 S
-2333.86 1629.12 -2.63 -2.25 1.63 -1.52 2.15 -0.23 S
-2335 1625.11 2.63 1 1.52 1.76 -1.12 1.78 -4.17 -0.52 S
-2353 1658.36 -2.52 -2.25 -3.14 -2.15 -2.28 -2.15 -1.63 -3.14 0.63 -2.15 0.13 -3.38 1.13 -1.26
--1.63 -3.4 1.63 -0.76 3.78 0.13 -2.26 -2.02 -1.65 -3.91 -4.28 -1.52 3.02 -0.63 -2.25 -2.64
--0.76 -2.89 -2.64 -2.14 -2 -1.89 -2.64 -0.13 -3.28 -0.24 -2.76 0.24 -1.89 -3.14 -3.14 0.5
--1.39 2.28 -0.5 3.02 -2.15 -0.76 -1.13 0.76 -2.78 -0.76 -1.87 -2.38 1.5 -2.65 2.26 -0.37
-0.75 -2.15 -0.24 -2.65 0.24 -2.13 -0.37 -2.28 -2.39 -1.52 -0.63 -2.63 0.13 -2.02 0.5 -2.28
--0.76 -1.52 0 -2.52 0.63 -2.25 1.13 -1.89 2.15 1.63 S
-2317.64 1592.34 0.5 2.52 0.87 3.04 0.76 2.52 1.64 2.26 0.37 -2.88 -0.37 -2.78 -0.13 -3.02
-2 -2.02 3.78 2.25 1.02 2.78 2.52 2.15 0.76 2.25 0.61 3.28 1.89 2.78 3.91 2.02
--0.37 -4.3 -2.39 -3.02 0 -3.02 3.14 1.49 2.63 -0.99 2.39 1.25 4.03 1.39 0.63 2.39
-0.26 2.52 0.37 2.78 0.87 2.78 -1.87 2.13 0.63 3.28 2.89 1.78 2.38 -1.15 1 2.91
-2.78 0.87 2.02 2.78 0.5 2.91 2.02 3.78 0.49 2.14 -0.89 2.26 3.02 1.52 1.76 1.26
--1.37 1.63 0.49 1.88 0 1.52 -2.88 0.63 -0.62 1.52 -2.52 0.63 3.39 0.63 2.64 2.02
-3.02 0.63 1.39 1.13 S
-2369.59 1651.43 -1.02 1.39 -2.76 1 -3.15 0.76 -3.41 -1.02 -2.75 -0.74 -2.52 -1.26 S
-2354 1651.56 1.75 2 2.78 1.02 2.63 0.89 2.91 0.24 2.13 -0.13 2.28 -1.39 -0.26 1.91
--0.5 1.89 -2.02 0.87 -3.02 0.75 -2.88 -0.12 -2.91 -0.13 -3.88 -1 S
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-0.63 1.76 -0.5 1.88 -1.13 1.26 S
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--1.15 -2.78 -0.11 -2.26 0.11 -2.15 S
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--0.63 1.63 0.13 2.15 -2.15 1.63 0.37 2.52 1.65 2.02 1.39 -0.37 1.24 1.52 1.78 0.86
--0.13 1.89 1.89 1.65 0.75 2.02 S
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-3.15 0.74 -0.13 1.15 -3.02 -0.13 -2.38 0.76 -3.15 -0.26 S
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--1.76 1.89 -1.78 0.52 S
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--1.26 -2.28 -1.13 2.28 -2.78 -0.63 -0.87 -1.26 -1 1 -2.28 1.02 -2.76 -0.5 -0.39 -2.02
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--2.02 1.13 -1.5 0.76 S
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-0.5 1 2.39 0.5 2.75 0.13 2.52 1.39 0.26 1.39 1.52 0.99 0.37 1.26 -1 0.63 S
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--1.88 0.63 -2.76 -0.11 2.76 1.26 2.02 1.13 -0.13 1.13 S
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-4.04 0.52 3.88 1.26 1.26 2.13 3.14 -0.87 3.52 1.39 -1.37 1.13 0.73 1.89 -1 1.26
--2.25 0 -3.41 -1.65 0.63 2.14 -0.87 1.13 S
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-2400.29 1692.36 -1.89 -0.5 0 -0.76 2.28 -0.11 -0.39 1.36 S
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-2387.59 1698.68 -1.39 -1.02 1.52 -0.76 2.26 -0.63 -0.76 1.52 -1.62 0.89 S
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-2.65 0.13 1.02 -1.26 2.39 1 -1.26 1.13 1.26 1.64 -0.39 1.39 -0.87 1.5 -1.52 1.52
--0.36 1.76 S
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-2.78 1.75 3.38 0.5 -1.13 1.02 S
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-2.52 1.63 1.15 1.39 -1.78 1.02 -2.52 1.25 -2.39 1 S
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-0.37 -1.76 3.14 0.24 1.52 2.91 2.26 2.52 2.91 1.76 3.88 0.13 3.91 1.25 3.02 0.64
-2.88 -0.87 2.41 -0.52 2.13 1.25 0.37 2.15 -3.02 0.89 S
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--1.26 1.39 -0.23 1.76 -0.89 1.52 -1.88 0.13 -1 1.37 -2.65 0.52 S
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-0.76 -2 1 -2.02 3.28 1.75 3.52 1 1.39 2.28 3.15 1.89 -0.26 2.14 0.5 2.26
--4.27 -0.14 -3.02 0.89 -2.25 1.52 -2.02 1.25 S
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-2520.42 1821.75 -2.13 0.89 -2.39 0 2.52 -0.89 2 0 S
-2467.34 1827.67 -2.64 0.37 1.52 0.76 S
-2459.29 1828.17 -3.52 -0.5 2.65 -0.39 0.87 0.89 S
-2447.22 1825.91 -2.78 -0.52 S
-2444.45 1825.39 -0.63 -0.87 S
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-2409.09 1815.95 -3.15 -1.39 -2.64 -1.26 0.89 -0.89 3.91 0.89 -0.89 1 1.89 1.65 S
-2446.83 1784.07 -0.5 1.26 -3.52 -0.73 -4.04 0.63 -3.27 -1.52 3.77 0.37 2.91 -0.62 4.64 0.63 S
-2423.57 1793.64 -3.02 0.39 -3.04 -0.39 -2.38 -1.13 0.63 -0.87 2.52 0.37 2.65 0.76 2.64 0.87 S
-2361.79 1785.72 -5.14 -0.26 -1.65 -1.76 0.13 -1.39 -2.39 -2.02 2.39 -0.24 2.39 0.74 -2.39 -2.25
-2.64 0.13 1.39 2.13 1.13 2.02 1.5 2.91 S
-2271.33 1736.83 -4.02 -0.24 -2.91 -1.52 -3.88 -0.87 -3.78 -1.52 -4.78 -2.78 4.15 1.25 S
-2256.12 1731.16 2.76 1.65 1.78 -0.39 4.14 1.15 2.39 -0.89 1.63 1.89 2.52 2.26 S
-2236.87 1720.21 -4.66 -2.39 -3.13 -2.52 -3.04 -2.65 -1.5 0 -2.39 -2.28 -2.52 -1.75 -0.89 -1.76
--1.75 -0.37 -3.02 -3.17 -2.26 -2.26 0.24 -1.52 3.78 2.52 4.14 3.15 3.91 2.64 4.4 2.41
-2.65 2.76 2.88 3.28 3.28 2.78 -0.13 1.13 S
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-0.76 -2.02 -1.89 -1.26 -1.02 -1.88 -1.39 -2.65 -2.5 -1.89 -1.15 -2.28 -1.88 -1.75 S
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-0.89 -1.89 -1.76 -2.39 -1.02 2.89 -1.89 1.52 -3.14 -1.89 -3.15 -2.02 0 -2.78 3.02 -1
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--1.02 -3.38 -0.87 -2.91 0 -4.04 2.76 -2 1.52 -2.02 -0.13 -2.65 1.89 -3.14 2.25 0.11
-2.78 1.91 1.89 2.39 2.39 2.15 2.89 1.75 1.25 3.64 3.28 0.63 3.52 1.65 2.28 2.12
-1.75 2.29 1.13 3.77 S
-2378.14 1571.94 1.76 -1.39 2.15 1.65 3.14 -0.26 3.26 -1.39 3.9 0.5 3.02 0.76 2.78 1.02
-2.25 1.63 2.15 1.63 3.02 1.52 2.39 0.63 2.76 -0.87 3.28 0.37 3.01 0 3.28 0.5
-2.65 0.63 2.76 1.13 2.91 1.15 2.13 1.39 -2.38 1 -2.02 1.89 -3.02 -0.63 0.63 1.25
-2.64 0.63 0.76 2.64 2.26 0.26 -0.37 -1.78 -0.39 -2.12 S
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-1.76 -1.52 2.02 -1.62 1.13 1.5 0.63 2.52 -1.52 1.15 1.89 0.63 1.39 0.5 2.28 -0.13
-0.63 1.76 -1.65 1.25 4.28 0.39 1.52 1.89 -2.02 0.37 S
-2444.45 1603.93 2.02 2.41 1 2.38 0.13 2.65 -2.02 1 1.02 1.64 2 0.88 2.28 -1.37
-1 1.49 0 2.65 -0.37 1.75 1.62 2.28 0.38 2.02 1.78 1.25 1.26 1.76 1.89 1.89
-2.26 1.89 2.02 1.39 3.52 2.28 -1 1.89 -2.78 1.13 -2.25 -1.26 -1.02 0.76 -1.63 -0.89
--2.25 -0.75 -2.64 -0.13 2.25 1.78 2.15 0.74 0.99 0.63 0.39 1.39 -1.89 0.25 -0.64 -1.25
--1.64 0 1.02 1.75 -3.67 1.26 1.78 0.39 2.13 -0.89 3.02 -0.26 2.39 0.63 -0.74 1.65
--1.39 1 0 1.39 -0.89 1.89 -2.62 1.13 -2.52 1.52 -3.02 0.13 -3.67 0.63 -3.25 -0.37
--2.39 -1.28 -1.65 1.65 S
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--2.12 0 -3.15 0.11 -3.28 -0.5 1.39 -1.89 -1.63 -1.26 -3.91 -0.75 -2.78 1.89 -2.52 0.52
--2 1.26 -2.91 -0.39 S
-2417.01 1560.59 1.65 -0.87 2.26 0.37 1.39 -1.13 -2.52 -1.39 -3.51 -0.99 3.51 -0.76 0.5 -2.91
--2.78 -1.76 4.54 -0.89 2.14 -1.89 3.02 -1.37 3.28 1.26 2.52 0 2.89 1.37 3.78 0.76
-2.76 2.28 0.75 3.02 -2.25 1.65 0.63 3.02 -2.38 -0.13 -1.02 1.52 -1.89 -1.39 -2.02 -0.63
--1.37 1.13 -2.52 0 -1.52 -1 -0.87 1.5 -1.15 -2.52 -2.89 -0.24 0.89 2.88 -1.13 2.15 S
-2423.7 1563.63 -1.65 0.87 -0.5 -1.26 -1.52 0.26 -0.87 -1.63 -2.15 -1.28 S
-2459.29 1581.9 2.25 1.5 S
-2447.85 1607.07 -0.76 -1.89 1.5 0 -0.74 1.89 S
-2531.25 1191 -0.5 -2.91 -2.78 -1.88 1.39 -2.75 1 -2.78 2.02 -2.26 1.89 -2.64 2.89 -1.79
-1.88 -1.75 2.02 -1.76 1.88 -1.76 1.39 -2.28 2.02 -2.26 1.37 -2.15 0.13 -2.39 0.89 -1.25
-0.5 -2.41 1.39 -1.75 1.5 -2.65 0.39 -2.78 1.5 -2.26 0.89 -2.65 -2.39 -2.91 1 -1.37
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--1.89 -2.26 -1.13 -3.28 -0.99 -3.28 -1.02 -2.78 -0.5 -2.62 -1.52 -2.78 S
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-0.24 -3.04 -0.13 -2.64 0.26 -2.26 1.13 -3.02 -0.13 -2.64 0.39 -2.15 0.63 -2.64 0.63 -3.02
-0.24 -2.65 1.76 -1.65 1.15 -2.12 2.52 -1.65 1.5 -2.12 0.63 -3.04 1.13 -2.13 0.5 -2.91
-1.15 -2.14 1.5 -2.13 1.39 -2.91 0 -3.01 -1.39 -1.39 -1.39 0 1.78 -3.02 0.63 -2.02
--0.26 -2.14 1.76 0.89 2.02 -1.65 1.75 -1.63 3.15 0.13 1.89 1.26 3.02 0.63 3.41 0.13
-2 1.26 3.02 0.63 S
-2596.03 1009.85 3.04 -0.39 2.26 1.02 2.78 -0.76 2.5 -0.39 1.88 1.39 3.54 0.26 1.5 1.39
-3.02 0.13 2.64 0.5 2.39 1.89 3.41 1.89 2.39 1.39 2.02 1.88 S
-2629.38 1020.05 2.63 2.39 2.02 1.89 2.52 1.89 2.65 2.28 1.75 2.39 1.76 2.78 2.14 2.38
-1.76 2.28 2.88 2.13 2.39 1.52 1.39 2.78 1.39 3.25 1.39 2.78 0.37 2.28 0.37 1.89
--1.76 0.76 2.39 3.28 2.78 1.26 1.89 0.99 3.77 1.63 2.76 1.28 2.02 1.5 1.75 2.91
--0.11 2.76 0.87 2.41 0.37 3.27 -0.61 2.26 -0.39 3.64 -0.5 3.28 -1.52 1.65 0.76 2.88
-2.39 2.02 2.02 1.65 2.02 2.65 2.39 1.13 S
-2680.08 1098.16 2.52 3.14 2.02 2.52 2 2.64 2.78 1.39 2.39 1.13 3.64 1 1.89 2.15
-2.88 2.78 1.89 2.14 2.02 2.76 1.65 2.52 0.63 3.04 -0.76 3.28 0.24 2.89 -0.74 3.28
-0.63 3.53 0.11 2.39 -0.24 2.89 0.5 3.04 0.13 2.89 -1.75 1.65 -1.89 1.13 -0.76 2.78
--1.26 3.28 -0.49 3.78 0 3.38 1.37 3.17 -2.26 2.63 -2.26 2.54 0.87 3.02 0.89 3.14
-1.26 3.15 1.26 2.64 1.76 3.78 1.63 3.78 -0.11 3.41 2.25 0 2.02 2.91 2.13 2.39
-1.26 3.28 1.64 2.26 1.63 3.41 2.39 3.02 1.26 2.78 2.02 2.52 2.02 1.89 2 3.02
-2.02 2.54 2.52 1.63 S
-2729.64 1228.41 2.02 2.52 1.89 2.52 1.5 2.91 1.88 3.14 1.52 2.39 1.75 3.02 1 2.91
-0.89 3.28 1.39 2.52 1.89 2.65 0.24 3.78 0.5 2.78 0.76 3.41 0.89 2.89 0.37 3.27 S
-2748.13 1272.37 0.89 2.26 0.74 3.04 1.15 3.52 -0.76 3.41 0.76 3.02 -0.26 3.54 -0.62 4.67
--3.02 0.11 -1.52 -3.15 -2.63 -1.89 -2.65 -1.88 -2.64 -0.24 -2.26 -1.79 -2.88 -0.87 -2.52 -2.9
--2.41 -1.14 -3.02 -0.36 -2.25 -2.15 -2.39 -1.75 -2.64 -0.13 -1.89 1 -2.13 2.02 -2.02 1.65
--2.02 1 2.25 2.15 -1.37 2.75 -2.52 1.78 -2.65 2.02 -2.15 2 -3.02 1.78 -2.62 2.39
--2.65 0.26 -3.28 0.73 S
-2691.14 1299.2 -1.89 2.65 -1.75 0 -1.75 2.15 -0.89 2.88 -1.26 3.28 -1.76 2.54 -1.75 2.13
--3.02 1.89 -2.78 0.76 -2 3.14 -0.89 2.28 -1.26 3.28 -0.26 3.02 -0.37 1.89 -2.15 2.02
--0.86 3.28 -1.89 0.63 -2.25 1 -2.02 1.02 -1.88 2.52 -0.89 1.88 -0.13 2.39 -2.13 1.52
--1.89 2.64 -1.76 2.13 -1.89 2.54 -1.39 2.25 -2.25 2.39 -1.02 2.28 -1.63 1.63 -0.99 2.28
--2.15 1.5 -2.12 2.02 -1.78 2.15 -1 2.25 -1.76 2.02 0.87 1.26 1.39 -2.13 1.89 -2.65
-1.63 -1.52 1.39 -1.76 2.02 -1.52 2.39 -1.39 1.02 1.26 -0.63 2.28 0.24 3.64 0.5 3.67
-0.89 -2.78 0 -3.02 S
-2647.25 1370.77 0 -3.04 2.25 0.5 2.28 -1.99 1.76 -2.02 2.38 -2.41 2.26 -2.52 2.14 -1.5
-2.26 -2.52 1.64 -2.64 1.87 -2.52 2.78 -0.76 2.52 -1.39 2.26 -2.52 2.02 -2.52 1 -2.78
-0.13 -2.02 1.02 -2.38 S
-2677.82 1335.75 1.26 -3.15 2.13 -1.65 1.26 -1.63 3.41 -0.13 2.63 -1.89 1.89 -2.52 1.88 -2.65
-1.89 -2.52 1.89 -2.14 1.89 -1 2.39 -2.41 1.88 -2.64 0.89 -2.39 0.13 -2.52 1 -2.78
-1.63 -3.28 1.52 -3.14 1.13 -1.26 0.14 -3.02 2.25 -2.52 2.28 0.13 4.77 2.26 2.26 1.75
-0.89 2.28 2.02 0.63 2.5 0.26 2.41 1.13 1.37 2.02 1.52 2.64 2.52 0.74 S
-2733.42 1304.36 2.12 1.78 1.15 3.02 2 2.26 2.52 2.02 2.15 1.78 2.13 1.76 2.14 1.89
-2.13 1.76 -0.5 2.02 0.26 2.28 1.89 2.39 2.02 1.89 1.89 2.39 2.13 1.39 2.02 0.26
-1.5 2.26 -0.11 3.28 1.99 1.88 1.65 1.26 0.87 1.52 -0.24 3.28 0.99 2.13 1.63 1.28
-1.52 1.89 -1.52 2.13 -0.74 3.15 0.24 3.03 1.76 0.76 0.26 2.89 0.37 2.52 0.76 2.28
-0 3.38 -0.13 3.54 -2.25 0.63 -2.39 1.76 -2.02 1.89 -2.88 -0.13 -2.28 -0.5 -2.63 0.5
--2.65 1.02 -2.64 1.63 -1.37 3.41 -1.15 2.91 -0.37 1.63 -1.25 0 0.13 -2.26 -1.12 -2.28
--1.26 -5.03 S
-2744.12 1380.84 -1.39 -2.91 -0.12 -2.89 -1.63 -1.26 -2.78 -0.63 -2.13 -0.89 -0.89 -2.02 -2.76 -0.63
--1.26 1.26 -1.78 -0.74 0.39 3.52 -0.76 3.02 -1.39 2.78 -1.89 1.39 -0.87 -0.89 0.63 -2.52
--0.63 -3.02 -1.26 1.25 -2.28 1.76 -0.62 2.52 S
-2720.71 1379.95 -1.63 2.14 -2.39 1.26 -2.78 1.63 -2.75 1.65 -1.89 2.02 -2.25 2.52 -1.79 2.52
--2.12 0.26 2.12 1.89 -1.99 2.02 2.13 0.74 0.26 3.41 1.89 -0.76 1.99 -0.87 1.39 1.63
-2.15 -1.39 2.76 -2.64 2.91 -2.13 1.89 -2.65 2 -1.88 3.28 0.24 2.25 -0.74 2.78 -1.65
-2.26 0.5 2.14 -1.39 1.89 1.39 2.39 -0.63 1.76 2.52 1.39 1.78 S
-2742.73 1393.32 1.63 2 2.15 0.89 2.13 -1.25 1.39 -2.26 1.89 -2.54 3.02 0.89 2.52 0.63
-2.88 0.26 2.28 0.5 2.02 0.99 2.49 0.76 1.89 0.5 2.91 0.89 2.13 1.76 1.76 1.52
-2.28 1.26 0.76 1.76 2.13 0 1.89 0.52 1.63 1.49 1.39 1.52 1.65 1.63 2.13 0.63
-1.89 -1.37 2.02 -0.65 1.89 -2.13 1.49 -2.15 2.28 0.13 2.26 -0.5 2.52 -1.65 2.78 -0.76
-2.25 1.39 1.63 2.52 0.89 -3.39 -1.39 -2.28 -2.26 -1.52 2.26 -2.38 2.25 -1.14 2.65 -1.52
-2.65 -0.24 2.25 1.39 1.39 2.25 0.63 3.15 -1.26 3.64 -0.63 3.04 1.13 0.13 1.13 -3.28
-1.52 -2.28 2.02 -1.89 S
-2825.89 1396.2 1.36 -3.77 1.02 -3.28 2.02 -2.65 1.26 -1.13 0.24 -2.52 2.14 -3.14 2.13 -3.28
-1.65 -2.91 1.76 -3.38 1.63 -2.28 2.15 -2.52 2.52 -2.28 2.52 -2.26 1.5 -3.02 1.75 -2.78
-1.76 -2.91 1.89 -3.28 1.89 -2 2.28 -1.89 1.88 -2.15 1.63 -2.78 S
-2862.87 1340.02 1.76 -2.88 1.75 -3.41 1.89 -3.54 2.02 -1.89 2.02 -1.39 2.02 -0.11 1.25 2.75
--0.52 4.43 1.15 2.75 1.5 1.65 -1 3.28 0.24 4.14 1.88 1.39 -1.26 3.91 -1.26 2.52
--1.12 3.28 0 3.54 -0.24 4.02 -1.15 4.03 -1.62 3.54 -1.89 3.64 -1.75 3.41 -0.76 3.02
--0.24 3.41 2.25 1.13 -0.5 3.14 0.87 1.52 S
-2870.16 1391.3 1.52 1.88 0.24 2.39 -1 2.91 0.37 1.88 0.63 2.89 -0.11 3.54 0.37 2.64
-0.89 2.39 0.24 3.41 -0.24 3.64 -0.26 2.91 0.13 3.38 1 1.89 1.02 2.65 -0.39 3.67
--0.76 3.38 -1.37 1.89 -0.76 2.65 0.88 2.64 0.63 2.39 -0.74 2.64 2.52 -3.14 0.87 1.89
-1.13 2.28 1.02 2.13 1.13 2.28 -0.5 3.28 0 6.42 2.52 -1.39 2 -2.02 1.89 -2.25
-2.02 -2.02 2.39 -1.39 2.78 -1.26 1.89 -1.13 0.87 1.13 2.15 -1.76 0.5 -2.28 2.26 -1.75
-0.89 1.25 2.26 -2.78 2.65 -3.14 2.25 -3.52 1.65 -4.54 1.25 -3.91 2.26 0.11 1.13 0.65
-1.13 1.5 S
-2915.32 1433.62 -0.24 3.41 0.24 3.28 0.39 3.52 -0.89 2.91 1.52 0.13 2.39 -1.65 2.26 -2.65
-2.02 -3.14 2.26 -3.64 2.15 -2.78 2.52 -3.41 2.75 -2.88 2.52 -3.54 1.15 -5.04 2.39 -2.65
-1.26 -3.02 0.37 -3.28 1.52 -3.64 1.76 -4.3 1 -5.28 1.39 -3.67 1.76 -2.52 0.25 2.15 S
-2948.04 1391.93 2.26 -1.65 2.38 -2.52 1.89 -1.26 1.89 -1.39 1.13 -1.39 1.13 -2.12 1.02 -3.15
-1.75 -4.29 1.63 -1.76 0.89 -4.17 2.26 -2.75 2.14 -1.89 1.39 -3.66 2.26 -0.87 1.75 -1.52
-2.02 -0.25 1.76 -0.63 1.52 -0.87 2.26 2.65 -1.76 4.14 -2.28 3.67 -1.76 1.49 -2.52 8.08
--1.25 4.01 S
-2971.81 1379.82 -1.26 4.04 -2.26 2.64 -2.02 1.02 -2.13 1 -2.02 1.13 -2.15 1.89 -1.89 -1.39
--1.63 0.65 -2.02 3.77 -2 3.15 -1.88 1.25 -2.15 4.67 -1.26 -2.41 -1.89 3.04 -1.75 4.27
--1.39 4.79 -0.37 3.39 -1.26 4.29 -0.89 3.52 -2.25 4.8 -1.76 4.54 0.37 2.75 1.88 0.76
-2.02 -4.14 1.49 1.39 1.02 1.63 2.52 -1.39 1.37 0.13 1.65 -1.39 1.89 -2.39 2.02 -2.02
-2.26 -0.89 1.26 2.41 1.75 -1.52 1.76 0.76 1.25 -4.41 1.76 -3.78 1.76 -2.54 -0.11 4.29
--0.13 4.14 0.76 2.78 -0.62 4.54 -2.15 4.54 1.26 2.39 0 3.66 -0.13 3.78 -0.11 3.64
-0 4.04 -1.02 3.27 S
-2961.37 1460.33 -1.62 3.15 -2.52 5.3 -1.76 3.02 -2.02 3.64 -2.25 3.28 -2.41 2.78 -2.76 3.41
--2.52 1 -2.39 1.39 -2.14 0.5 -2.62 0.63 -2.41 1.39 -2.52 1.02 -1.63 1.76 -2.12 0.5
--3.14 2.39 -2.02 4.04 -1.65 3.41 -0.74 4.41 -1.65 3.78 -0.99 3.91 -0.63 3.78 -0.63 3.41
--0.26 3.4 0.63 2.26 S
-2916.58 1527.84 1.65 0.26 0.38 1.5 2.02 -3.02 1.39 -1.12 2.26 -1.89 0.37 1.52 -0.63 2.25
--2.38 1.52 -1.5 2.89 -0.39 3.41 0.13 3.15 -0.87 3.91 0 2.88 -0.63 3.54 -2.65 3.41
-2.13 0 -2.63 3.91 2.52 -0.13 -2.14 4.14 0.13 2.54 -0.26 2.89 -0.24 3.01 -1.39 4.04 S
-2913.82 1572.44 -1.89 4.54 -1.39 3.54 -2.02 4.02 -1.49 3.17 -1.89 1.89 -0.13 2.52 -2.52 3.28
--1.63 3.02 -2.14 3.14 -2.65 3.54 -2.13 2.25 -2.52 1.76 0.37 1.26 -2.25 3.41 -2.88 3.41
--2.65 3.4 -2.39 3.02 -0.26 1.75 -1.76 2.02 -1.52 0.75 -3.39 3.28 -0.26 1.26 -3.77 3.14
--1.76 1.52 0 -1.65 -0.73 -1 0.99 -3.28 -0.76 -0.89 -0.99 2.91 -1.89 2.38 -1.39 2.39
--1 2.52 -2.02 1.02 -2.15 -1.02 -0.63 2.78 -2.52 1.02 -1.63 -0.65 -0.76 -0.87 -2.62 1.26
--2.52 1 -2.52 0.89 -3.14 1.25 -1.02 -1.75 -1 -1.65 -3.02 2.78 -2.39 2.52 -2.78 3.54
--2.25 3.28 -2.91 2.12 S
-2827.25 1658.22 -1.99 3.67 -2.28 3.14 0.63 1 -3.64 2.78 0.13 -1.89 0.63 -2.28 0 -1.62
--1.26 -0.63 1.76 -2.78 2.02 -2.38 2.02 -2.02 0.37 -1.89 -1.13 -0.89 -2.78 1.13 -1.13 -1.26
--1.26 -0.87 -1.88 -0.39 -2.26 1.64 -2.52 2.52 0.76 1.25 -1.26 2.78 -1.88 1.89 -2.39 1.89
--2.28 2.88 -1.76 2.65 -3.25 3.04 -2.91 2.76 S
-2797.7 1674.35 -0.37 2.64 2.26 0.13 3.41 -2.65 2.25 -2.52 1.89 -1.52 1.76 0.39 3.51 -3.54
--1.12 2.02 -2.39 3.02 -2.76 2.52 -2.02 3.04 -2.02 2.64 -1.5 2.75 0.11 2.15 -0.24 1.65
-0.5 0.99 3.91 -2.52 3.14 -2.02 3.26 -2.39 1.76 1.39 -2 3.65 S
-2811.04 1686.2 1.26 1.39 2.52 -0.5 1.63 -3.04 3.38 -0.24 3.41 -0.76 3.77 -3.41 3.39 -1.63
-2.91 -0.52 -3.54 4.04 -2.26 3.4 -2.25 3.91 -3.15 3.64 -3.4 2.52 -3.02 1.78 -3.52 1.37
--3.14 1.02 -3.02 0.63 -2.15 -0.39 -1.49 -0.63 -2.28 0 -1.26 -1.13 -0.63 -1.5 -2.63 1.63
--1.25 -0.13 -1.76 2.39 -2.02 2.28 -2.91 2.78 -3.51 3.02 -2.13 2.15 -3.54 1.13 -1.39 0.13
--4.77 3.15 -2.65 2.78 -2.63 1.26 -1.02 1.36 -3.64 2.15 -2.39 1.39 -1.63 2.39 2.13 -0.5
--0.5 2.78 -3.02 3.02 -4.14 2.78 -3.78 3.02 -4.91 2.64 -3.41 1.13 -4.91 2.91 -5.27 2.75
--4.8 2.41 -4.14 1.76 S
-2721.59 1750.7 -3.78 1.52 -4.64 1 -4.41 1.89 -5.03 1.89 -5.54 2.28 -3.64 0.5 -3.28 0.37
--3.52 -0.11 -2.78 -0.39 -3.41 0.13 -3.39 0.5 -3.64 0.76 -2.89 0.63 -0.63 -0.89 -2.52 -0.37
--3.28 0.5 0.37 -1.89 0.13 -1.52 -1.13 -0.37 1 -2.02 2.14 -1.89 4.91 -1.39 3.78 -2.52
--3.02 0.89 -2.65 -0.26 2.26 -1.63 3.77 -1.02 -2.52 -0.13 -2.63 -0.11 S
-2671.66 1747.05 2.63 -2.15 0.89 -1.89 -1.39 -0.26 -3.64 1.89 -4.41 1.65 -3.91 1.63 -4.41 1.52
--4.77 1 -3.39 1.02 -3.91 1.25 -3.14 1.13 -2.89 0.5 -3.28 0.52 -3.4 1.13 -2.76 0.37
--3.41 1.02 -3.52 2.02 -3.02 2.13 -2.89 1.89 S
-2617.05 1763.41 -0.26 1.02 -3.14 0.63 -2.12 2.25 -2.91 1.26 -1.89 1.39 -1.12 -0.13 -1.5 -0.37
--2.02 0.76 -1.52 1.63 -1.89 1.39 -2.13 0.63 -0.13 1.26 3.28 -0.5 0.24 1 -2.38 1.26
--4.15 1.15 -2.28 0.37 -2.12 1.39 -4.78 1.63 0.24 -1.13 2.15 -1.25 -3.28 -0.76 -3.52 -0.37
--4.03 0.24 -3.78 -0.24 -3.64 -0.39 -4.14 0.89 -3.65 0.89 -1.89 1.26 -3.54 0.5 3.77 1.26
-0.76 1.13 0.13 1.25 -4.28 0 -3.52 -0.24 -3.28 -0.39 -2.78 0.39 -1.13 -1.25 -2.38 -1.15
--4.78 0.63 -0.75 0.76 3.14 0.25 1.89 1.52 2.26 1.75 1.89 0.76 3.78 -0.39 3.64 0
-2.38 0.63 4.04 0.39 S
-2559.94 1788.37 4.77 0.24 3.02 0.63 4.28 0.13 4.67 0.13 4.01 -0.5 2.78 -1.16 0.5 1.16
-3.15 0.5 3.39 -0.76 6.29 1.52 2.91 1.26 1.37 1.13 1.39 1.39 1.02 1.25 1.75 1.63
-2.13 1.52 0.89 1.89 1.76 1.25 1.76 0.89 0.63 1.13 -4.77 0.76 -4.77 0.24 -4.8 -0.37
--3.14 -1 -4.28 0.24 -3.64 1.39 -1.12 -1.12 -2.26 -1.13 -3.66 -0.13 -4.14 0.87 S
-2575.79 1803.34 -2.13 1.02 -2.78 -0.12 0.5 -1.76 -1.26 -1.52 -2.88 -0.63 -2.89 0.13 -1.15 1.39
--2.39 0 -0.74 -1.65 1.37 -1.13 -1.26 -1.13 -3.52 -0.62 1.76 -1.52 2.78 -0.13 -0.63 -1.5
--3.02 -0.62 -3.77 -0.63 S
-2553.78 1792.91 -2.28 -1.02 -1.89 -1.13 -3.89 0.37 -1.88 1.15 -3.28 -0.52 -3.91 0.26 1.39 1.89
--3.78 -0.75 -3.28 -0.24 -3.52 0 -3.64 0.99 -2.26 1.39 -1.52 1.39 -2.38 -1.52 -3.91 -0.37
--3.89 -0.75 -3.53 -0.76 -3.39 -0.89 -3.14 -0.11 -3.28 -0.89 -3.91 -0.37 -3.02 -0.89 -4.64 0.26
--3.28 0.99 -2.64 -1.52 1.52 -1.26 1.5 -2.02 0.89 -1.89 0.89 -1.25 3.02 -0.13 -0.26 -1.5
--4.14 0.37 -3.28 -0.87 -1.52 -0.52 S
-2477.65 1780.79 -1.13 -0.5 -1.37 -1.89 2.26 -1.26 -3.02 -1.26 -0.63 1.52 -1.26 1.63 -2.91 0.25
--2.25 -0.75 -3.52 0.37 -0.89 1.65 -2.88 0.76 -4.15 0.87 -3.77 0.39 -0.39 -1.78 S
-2451.73 1780.79 -1.62 -1.36 0.63 -1.91 -3.64 -0.5 -1.26 -1.39 -2.02 -1.37 3.91 -1.02 3.25 -1.26
-4.92 -0.13 4.28 0.39 1.89 -1.52 2.75 -1.13 3.52 -1.13 3.91 -0.89 2.78 -1.26 2.63 -1.26 S
-2477.65 1765.06 0.76 -0.39 3.02 -1 3.54 -0.76 3.25 -1.12 4.17 -0.26 3.52 -0.63 3.52 -0.76
-3.77 -0.74 0.76 2.26 -0.5 1.75 2.02 0.76 2.52 0 0.11 -1.39 2.52 -1.13 -0.36 -1.26
--2.52 0.37 -1 -0.87 2.76 -1.13 2.15 1 2.26 0.63 3.28 -1.39 4.27 -1.25 4.78 -0.89
-4.14 -1 2.15 -1.76 -2.52 -1.13 -0.37 -1.78 1.26 -1.5 2.76 -1.26 3.14 -1.39 3.78 -0.76
-2.38 -0.89 2.78 -0.76 S
-2545.72 1744.64 -1.39 -1 0.88 -1.52 1.89 -0.87 0.26 -1.39 -1.76 -1.76 1.89 -1.65 3.14 -1.62
-1.76 -2.28 2.12 -1.63 2.02 -1.64 2.38 -2.13 0.89 1.37 2.38 -1.5 2.02 0.13 1.13 1.13
-1.39 1.5 2.25 -2 3.52 -2.28 0.39 -1.39 1.76 -0.86 2.38 -0.26 0.39 -1.52 -1.16 -1.89
-2.91 0.26 2.89 0.38 3.02 -0.5 0.26 -1.52 -1.13 -1.88 -2.28 -1.63 -3.38 0.37 -3.54 -0.37
--1.37 -2.28 0.87 -2.39 0.63 -2.89 1.89 -2.28 2.25 0.13 1.65 0.99 1.76 -1.62 1.39 -2.64
-0.13 -2.15 -2.78 -0.12 1.13 -1.76 -0.13 -1.89 1.25 -1.39 1.89 -1.5 -3.38 -1.26 S
-2582.21 1691.62 -2.65 0.63 0.26 -1.64 S
-2579.82 1690.61 1.37 -0.63 1.02 1.65 S
-2582.21 1691.62 2.64 0.38 0.63 -1.26 -0.63 -1.13 -0.63 -1.39 2 -0.89 1.39 0.89 1.76 -1.76
-1.65 -1.78 0.5 -1.5 -3.15 1.13 -1.63 1.52 -3.41 1.76 -2.89 1.63 -3.64 1.78 -2.91 1.25
--3.52 -0.13 -2.52 -0.5 -1.62 -1.39 -0.63 -1.39 0.24 -1.75 0.5 -1.52 1.89 -0.39 0.52 -1.5
--3.78 1.13 -0.13 -1.52 0.63 -1.89 -2.91 1.89 -1.76 -2 2.65 -1.65 3.28 -1.63 3.38 -0.26
-0.26 -2.15 2.25 0.26 1.39 -3.28 -2.26 0.63 1.76 -2.78 0 -1.63 2.13 -1.65 1.02 -2
-1.39 -2.54 1.99 -2 1.89 -1.65 2.28 -0.63 2.89 -0.13 0 -2.38 0.5 -2.15 S
-2587.61 1653.69 -0.13 -2.39 -0.24 -2.28 3.88 -0.74 3.28 -1.15 1.76 1.39 3.02 -0.13 0.39 -2
--3.15 -0.39 -2.26 -0.86 -0.52 -1.28 -2.12 -0.37 1.13 -1.52 2.88 0.75 0.76 -1.12 -2.13 -0.5
-0.38 -1.52 3.02 -0.5 2.52 1.26 1.89 0 -2.15 -1.65 -2.12 -1.63 -3.14 1.39 -2.26 1.63
--3.27 1.02 -2.65 -0.26 0.63 -0.87 2.26 0.5 2.15 -0.89 1.63 -1.52 0.39 -1.63 2.52 -2.26
-2.52 -0.13 2.89 -0.52 2.15 -1.89 2.75 -1.76 3.78 -1.52 1.89 2.02 0.63 -2.02 2.88 -1.75
-3.78 -1.26 1.65 -2.64 2 -2.13 0.76 -2.64 0.37 -2.28 -3.64 -0.24 -0.37 3.15 -1.13 2.13
--1.76 2.41 -2.41 1.39 S
-2614.65 1624.48 -2 1.89 -3.53 -0.13 -2.89 1.5 -3.28 2.02 S
-2602.95 1629.75 -6.03 3.04 -3.14 0.11 -2.02 2.02 -2.12 1.78 -2.02 1 -2.76 -1.13 -1.15 1.13
--2.38 0.37 0.13 -1.76 1.89 -1.89 2.02 -1.89 2.63 -1.75 2.02 -2.02 0.63 -2.65 2.15 -1.52
-2.89 -0.74 1.89 -2.02 1.88 -1.15 1.89 0.63 3.39 -1 2.28 0.13 2.26 -2.41 -2.39 -0.24
--2.64 0.24 -2.25 -0.87 -2.39 -0.39 -1.65 -0.87 -3.13 -0.13 -2.02 -1.26 -3.77 -0.75 -3.52 0.39
-0.99 -1.78 2.02 -0.37 2.62 0.24 2.15 -0.87 2.52 -0.5 0.5 -1.65 -0.5 -1.13 1.63 -1.39
--1.5 -0.5 -2.91 2.15 -0.5 -1.65 0.39 -2.52 S
-2592.91 1604.19 -2.02 -0.89 -1.13 -1.5 1 -1.78 -2.89 0.39 -2.38 2.02 -0.39 -2.02 -0.24 -2.14
--1.02 -1.89 -0.37 -1.89 -0.75 -2.28 -1 -1.63 2.52 -2.65 -0.52 -2.02 -1.88 -1 -2.26 1
--2.38 -0.24 -0.63 2.52 1.89 1.5 -2.52 1.39 -2.02 0.63 -2.02 -1.13 -3.02 -0.5 3.27 -1.02
-2.26 -2.52 1.25 -2.64 2.02 -0.11 1.89 -2.28 0.13 -2.02 -2.15 -0.14 -2.25 -0.5 -0.26 -2.25
--1.13 -2.15 -0.63 -2.26 2.52 -1.52 2.78 -1.89 -2.91 -0.76 -2.38 0 -2.76 0.36 -2.14 -0.23
-0.13 -2.02 3.02 -1.39 1.63 0.76 1.65 -2.39 -2.91 -1.15 -3.65 1.02 -3.14 0.37 -1.5 2.39
--1.25 2.02 -1.52 2.41 S
-2560.8 1570.18 -3.38 1.25 -2.65 0.63 -2.64 1.89 3.02 -0.89 2.91 0.13 2.89 -0.37 S
-2560.94 1572.83 2.26 0.24 2.41 0.5 2.88 0.13 2.13 1.52 1.39 2.15 0.13 2.13 -1.75 2.28
--2.15 1.63 -2.88 0.76 -2.89 0.26 -3.02 0.74 -3.04 0.76 -3.12 0.26 -3.04 -0.26 -3.02 -0.5
--1 1.52 -2.38 0.11 -1.13 -1.26 -2.65 -0.5 -3.28 0.89 2.65 0.36 1.25 2.28 -2.52 0.64
--2.78 0.49 -2.88 0 -0.26 -3.27 -1.5 1.89 -1.13 -2.14 -1.26 2.9 -1.12 -1.25 -0.39 -1.89
--2.39 0.75 -1.39 -1.64 -0.75 -2.39 -2.39 -1.52 -2.52 -0.5 -0.87 -2.78 -2.02 -1.26 0.5 -1.63
-1.39 -0.26 -1.52 -2.02 -0.64 1.65 S
-2514.25 1574.59 -1.12 -1.52 -0.13 2.65 -1.37 -1.89 -1.65 -1.63 1.65 -1.02 -2.78 -1.39 -1.13 -2.25
-2.02 2.02 2.13 0.73 2.52 0.76 -2.02 -2.88 -0.11 -2.29 -1.52 -2.38 -0.64 -2.28 -0.36 -2.26
--0.5 -2.25 -0.52 -2.78 -1.76 -1.89 -1.12 -3.28 -1.26 -2.28 -1.13 -2.38 -1.75 1.25 -0.89 -2.39
--1.13 -1.75 -2.64 -0.63 -1.63 -2.28 -1.62 -1.89 -2.02 -1.89 1.13 -1.76 -1.13 -1.78 0.63 -2.13
-0.5 -2.28 1.63 -2.15 -0.87 -1.88 0.63 -1.63 2.25 0.5 -1.39 -1.88 0 -2.15 1.39 -1.37
-2.78 -1.15 2.63 -0.24 2.52 1.49 1.26 1.89 2.02 2.41 1.52 0.13 0.74 1.89 1.75 -1.15
-1.26 -3.02 1.52 -2.52 S
-2514.52 1515.75 1.63 -3.02 1.52 -2.52 2.25 -2.02 -0.5 -1.89 1.52 -2.15 0.37 -1.76 2.15 0.24
-2 0.26 S
-2525.46 1502.91 -0.63 1.76 1.15 2.39 2.13 0.26 1.88 0.26 0.63 3.28 -0.26 3.15 0 2.38
--0.62 2.65 0.13 1.75 1.76 2.15 1.89 1.76 -1.25 0.63 1.39 1.64 0.39 1.37 -1.26 1.64
--2.41 1.39 -2.39 1.5 -0.87 2.15 -0.26 2.64 -0.5 2.65 0.63 1.52 1 2.89 1.52 2.02
-1.25 1.63 1.76 1.65 0.25 1.89 1 2.14 -2.15 0.88 0.63 1.89 -0.63 1.25 1.15 1.15
-0.38 1.89 1.89 0 1.63 0.37 1.39 0.89 2.64 -1.26 1.13 -2.52 -1.25 -1.26 -0.37 -2.78
--1.25 -2.64 S
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-2.13 3.28 2.14 1.02 2.52 0.87 2.39 2.02 2.15 1.39 S
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-2.39 0.5 1.63 2.02 2.28 1.52 2.38 1 0.87 1.89 1.65 1.02 2.12 -0.26 1.39 -0.89
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--0.39 2.28 2.15 1.26 -0.5 2.39 -2.39 1.15 0.24 2.76 0.76 2.02 2.02 -0.76 2.13 -0.11
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--2.75 1 -2.28 1.25 -1.26 1.29 -0.74 2.25 -1.39 2.15 -2.25 1.25 S
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-1.76 1.63 2.15 -0.26 -0.5 -1.36 0.63 -1.91 1.26 -1.26 1.13 1.02 0.13 1.89 3.02 -1.52
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-1.39 -1.76 2.15 -2.52 2.25 -2.02 S
-2571.5 1413.21 3.41 0.13 3.15 0.87 1.87 -1.5 2.64 0 2.65 -1.52 -0.89 3.27 2.78 -0.5
--2.02 0.63 -0.76 1.75 -2 0.64 -1.89 1.13 -1.02 1.76 -1.89 1.52 -2 2.14 -0.39 3.28
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--2.39 -0.5 -1.26 -2.15 0.11 -3.39 3.41 1.26 -0.26 -1.65 1.25 -3.14 1.02 -1.13 -0.89 -0.76
--1.89 1.13 0.26 -2.02 S
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--0.39 -1.5 2.52 0.5 3.64 -1.75 2.39 -0.39 2.91 2.14 0 2.52 2.63 0.13 3.67 -0.62
-1.63 -1.52 S
-2623.09 1411.07 2.39 -0.5 1.52 1.52 1.76 0.37 1.5 2.39 1.26 2.41 3.28 -0.63 1.39 0.38
-1.39 2.52 0.87 -1.26 -0.76 -2.39 1.39 -1.64 -0.13 -2.02 1.25 -3.77 1.26 -2.65 -0.63 -2.76
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--2.15 -1 S
-2616.79 1377.69 -3.02 0.88 -2.78 -0.5 -2.52 0.39 -2.12 0.63 -2.78 0 -2.89 -0.13 -2.52 -0.89
--1.76 2.15 -2.64 -0.5 -2.89 0.37 -2.91 0.13 -0.87 2.25 -2.89 0.52 -3.14 -0.13 -2.65 -0.76
--2.52 -1.39 -2.39 -2.78 -0.76 -2 1.13 -1.78 0.76 -2.26 -0.37 -2.52 -1.39 -1.65 -1.89 -1.12
--2.38 0.13 -2.78 1.63 -3.39 1.39 -4.17 0.5 -2.88 0.13 -2.52 1.13 -1.39 1.26 -0.37 2.91
--2.88 0.63 -2.91 1.13 -2.88 0.13 -3.65 0.13 -3.14 -0.25 -2.39 0.75 -2.91 1.26 -1 2.28
--2.02 -0.62 -2 0.73 -0.63 2.41 1.5 1.5 1.76 2.02 0.89 2.39 -0.62 2.28 -1.63 0.89
--1.02 3.14 1.39 1.13 S
-2526.97 1397.59 0.89 2.39 -2.91 -1.62 -1.39 2.78 -2.39 0.24 -2.12 -0.63 -1.76 -1.52 -2.28 -0.62
--3.52 0.76 -1.75 -1 -3.54 0.76 -1.89 -1.52 -2.25 -0.5 -1.5 0.76 -2.65 0.5 -2.78 -0.13
--1.76 -0.5 -2.39 -0.13 -2.26 -0.89 S
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--3.15 -1.39 -2.39 -0.5 -2.64 1.52 -1.89 -0.5 -3.14 0.11 -2.02 -0.37 -3.02 1.88 -0.99 1.89
--2.39 -0.24 -1.26 -2.78 -0.89 -2.38 -1.39 -2.29 -1.25 -2.25 -2.89 -1.65 -2.75 -0.89 -2.52 -1.25
--1.78 -2.26 -2.12 -1.76 -0.13 -1.78 -1.39 -2.39 -1.75 -1.26 -0.37 -4.66 1.13 -2.02 S
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--2.39 -2.15 -1.89 -2.26 -1.49 -2.14 -1.76 -3.67 -1.52 -2.25 -1.89 -1.26 -0.76 -2.78 -0.62 -2.76
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-1.63 -2.39 1.25 -2.52 S
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-2.78 -1.52 2.75 -1.62 2.28 -2.41 3.78 -2.12 2.63 -3.04 2.28 -1.89 2.89 -2.02 3.28 -2.52
-2.76 -1 2.39 -0.63 2.78 1.76 3.4 0.39 2.39 1.89 S
-2444.08 1218.34 3.38 0.24 3.28 0.5 2.38 0.39 2.78 0 4.28 -1.12 2.89 -0.39 3.27 -1.5
-2.39 1.37 2.76 0.89 2.41 0.5 2.38 1.39 3.26 1.89 3.78 0 1.39 1.89 3.41 0.89
-2.75 0.63 2.91 0 3.25 0.5 3.28 0 2.88 -0.87 2.78 -2.15 1.5 -3.78 1.02 -3.77
-3.39 -1.79 2.78 0.13 2.89 0.5 2.78 0.63 2.89 0.13 S
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--0.39 -3.28 -0.99 -2.39 -1.39 -2.52 1.89 -0.76 -1.39 -2.39 0.13 -2.78 S
-2549.37 1271.62 1.5 -1.76 1.02 -2.38 1.89 -1.26 0.63 -1.78 1.49 -1.39 2.15 1.65 2.65 1.13
-0.74 3.02 -2.76 -0.24 -3.14 0.13 -0.13 1.89 -1.52 1.89 -2.75 0.24 -1.76 -1.13 S
-2657.55 1191 1.02 -3.78 2.26 2.78 2.78 -0.63 3.64 0.63 2.26 2.25 -3.28 0 1.75 2.15
-1.79 2.76 0.73 3.54 0.76 2.02 -1.49 2.65 -2.78 0.63 -2.76 -0.5 -3.14 -0.89 -3.14 -2.52
--0.63 -3.54 0.87 -2.25 -0.24 -2.39 -0.39 -2.9 S
-2644.59 1166.69 1.39 -2.78 1.89 -2.65 2.76 -2.02 1.39 -3.52 -0.5 -2.91 3.28 -0.62 -0.39 2.78
--1.37 2.78 -1.39 3.02 0.37 2.02 -2.25 1.63 -2.39 1.65 1.37 2.52 -0.99 3.14 -0.87 3.28
--1.52 3.14 -0.5 3.78 -1.39 -4.03 1 -2.65 -0.86 -3.02 1.49 -3.14 -0.5 -2.39 S
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--0.26 3.77 -1.63 2.15 -0.39 3.28 0.13 3.28 1.13 3.53 -1.76 3.15 -0.37 2.75 -0.39 3.79
--2.26 1.63 -0.5 -1.52 1.26 -5.54 0 -1.02 0.76 -4.14 -1.89 -2.64 S
-2592.51 1441.43 2.39 -2.02 1.39 -2.02 2.52 -1.39 2.78 -0.37 S
-2601.58 1435.63 2.76 0.13 2.65 1.13 2.52 0.13 1.5 1.89 1.52 1.89 1.49 1.89 2.41 1.64
-2.39 0.24 2.64 0.76 1.76 1 1.99 -1.37 2.65 0.74 2.14 -1.89 1.76 0.52 2.38 -0.75
-1.52 0.87 2.25 -0.24 2.13 1.26 2.02 1.13 2.52 0.37 2.02 1.15 1.39 2.65 1.26 2.13
--0.39 1.88 -1.76 1.39 -1.75 2.02 -1.39 0.63 -3.02 0.5 -2.52 0.63 -1.89 1.02 -2.75 1.5
--2.52 0.76 -2.02 -0.11 -1.62 0.37 -1.89 0.5 -1.78 1.39 -1.26 -0.37 -1.87 -1.15 -2.15 -0.11
--1.25 -1.91 -1.63 -1 -0.76 -1.76 -1.52 -1.39 -1.76 0.89 -0.37 2.52 -1.52 0.5 -2.52 0.24
-0.63 2.78 2.14 1.65 S
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--0.89 -2.28 -1.89 -1.39 1.26 -2.65 0 -2.02 -1.63 -1.37 -0.62 -2.15 0.75 -2.28 0.5 -2.75
--2.14 -1.02 0.5 -2.88 -1.13 -2.15 S
-2612.52 1467 1.63 -0.64 1.65 -1.49 2.25 -0.26 1.76 1.52 2.15 0.76 2.63 0.24 0.39 3.14
-0.76 2.91 -1.65 0.5 -1.5 1.02 1.76 0.63 1.25 2.52 1.76 1.13 -1.52 0.5 -1.89 -1.13
--2.76 -1.52 -1.75 -2.64 -2.52 -1.26 -1.89 -2.13 -0.76 -2.28 -1.75 -1.52 S
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-2.25 -0.63 S
-2674.91 1464.37 2.39 -1.78 1.78 -1.89 3.02 -1.5 2.63 0.11 -1.63 -1.37 -0.26 -2.28 0.89 -3.02
-0.63 -1.89 -1.63 -0.76 2 -3.04 1.65 -2.63 1.76 -2.54 2.26 -0.11 2.78 0.63 1.39 -1.15
-3.38 -0.63 2.64 0.13 2.76 2.41 2.28 2.25 3.02 0.89 -0.76 2.02 -2.89 3.14 -2.02 3.64
--0.89 3.64 -1.75 -0.23 -1.76 1.88 -1 2.39 -2.64 -1.39 -1.39 1.65 -0.63 3.14 2.52 0.24
-2.28 1.15 1 2.89 -2.52 1.02 -2.52 1 -2.14 1.76 -2 -1.62 -0.12 -2.39 1.63 -2.02
--2.75 2.02 -1.65 2.13 -0.11 2.78 -1.39 1 -2.28 -1.13 -2.75 0.89 -2.15 2.39 -3.02 2.02
--2.38 -0.12 -0.5 1.39 S
-2672.03 1481.49 2.26 1.13 1.89 0.39 -2.52 2.26 0.89 2.64 2.13 1.76 2.64 -0.24 1.65 1.39
-1.87 1 -1.87 0.76 -1.78 2.02 -2.25 2.26 -3.02 1.25 -2.89 0.76 -1.65 -0.89 -2.02 -1
--1.89 -0.37 -1 -3.41 -1.88 -1.52 -1.39 -1.75 1.15 -1.26 -1.39 -1.13 0.13 -2.15 -2.64 -0.26
-0.37 -2.52 0.39 -3.14 0.11 -2.78 S
-2695.92 1497.75 1.78 -2.52 1.37 -1.02 2.15 -3.02 2.13 1.26 2.02 1.39 1.13 -0.63 1.39 2.26
--0.13 3.8 -1.89 2.52 0.89 1.26 0 2.02 -2.25 1 -3.04 1 -1 1.26 -0.76 2.91
--0.37 2.25 -0.89 -2.62 -1.37 0.37 -1.26 -2.15 1.37 -1.62 -1.63 0.13 0.89 -2.52 S
-2696.44 1505.05 -1.52 -1.02 -0.63 -1 1.26 -2.28 0.37 -3.02 S
-2734.55 1533.64 2.52 -0.5 2.15 -1 -3.15 4.02 -1.78 1.39 0.52 2.28 -0.26 2.13 0.99 2.78
-2.52 1.39 0.26 2.02 S
-2738.32 1548.13 2.65 0.5 1 2.39 -0.63 2.78 -1 -1.26 0 -1.89 -1.39 -0.89 -0.63 -1.63 S
-2738.32 1548.13 -1.52 -0.89 -1.89 -1.5 -1.37 -2.41 -1.52 -0.87 0.39 -2.91 0 -2.39 2.13 -3.53 S
-2737.96 1641.73 1.63 2.13 -1.12 2.78 -1.13 2.52 -3.41 2.41 -2.26 3.15 -1.39 2.88 -2.38 2.41
--3.65 3.14 -3.53 2.39 -3.39 1.39 -4.03 1.63 -3.52 1.78 -0.89 -0.89 1.78 -1.13 2.25 -1.02
-3.02 -1.89 2.89 -1.88 2.91 -1.89 S
-2721.72 1661.63 3.02 -2.65 3.02 -2.78 2.26 -2.13 1.78 -2.14 2.26 -2.15 2.25 -2.26 0.63 -2.52
-1.02 -3.28 S
-2562.83 1542.08 2.38 -1.26 2.02 -1.76 1.39 -2.02 1.13 0.37 0.13 1.52 2 0.63 0 1.89
--0.87 1.76 -1.75 1.39 -2.15 0.26 -1.76 0.89 -1.76 -0.52 -0.89 -1.76 0.13 -1.39 S
-2572.77 1549.26 1.63 -1 2.14 -0.13 1.26 -2.15 1.25 0.5 0.63 1.26 -1 1.65 -1.89 0.87
--1.52 1.39 -1.13 2.15 -2.15 0.63 -2.25 0.13 1.5 -0.89 1.52 0 0.89 -1.63 -1.65 -0.5
-0.76 -2.28 S
-2714.93 1085.05 -0.39 -2.39 0 -2.91 0.89 -2.25 -0.13 -3.77 -0.24 -3.28 1.63 -2.65 1.76 -1.75
-1.89 -1.15 S
-2720.33 1064.89 2.65 0.75 2.38 1.76 2.75 1.25 2.02 -0.24 2.28 3.15 1.24 2.52 1.39 3.02
-1.25 2.15 0.89 2.52 0.87 2.52 0.89 2.52 1.13 2.52 1.39 2.65 1.13 2.64 0.89 2.52
-1.26 2.65 1.13 3.14 1.39 3.17 1.63 3.64 0.87 3.02 0.89 3.67 0.26 2.52 1.37 1.63
-0.76 2.65 0 4.9 1.89 -2.12 2.02 3.38 -0.13 2.91 -0.5 4.41 -1 3.41 -0.26 3.41
--1.12 2.75 -1.65 2.65 -2.25 -2.89 -0.13 -3.04 -0.63 -2.64 -2.26 -1.37 -2.65 -1.02 0.26 -2.89
--1.89 -1.78 0.24 -2.52 -2.12 -0.37 -2.52 -3.28 -2.26 -1.89 -2.78 -1.89 -2.64 -1.52 -2.75 -1.89
--2.29 -0.37 -1.75 -4.66 S
-2723.85 1114.91 -2 -3.15 0 -3.28 1 -3.27 -0.37 -2.52 0.87 -3.14 -0.63 -2.52 -2.26 -3.17
--1.13 -2.62 -2.14 -2.54 -2.25 -3.64 S
-2776.82 1099.66 0.5 -2 2.02 0.37 0.63 1.13 -1.02 1.25 -2.13 -0.75 S
-2788.02 1104.58 2.13 0.37 0.39 2.14 -1.13 0.76 -1.39 -3.28 S
-2759.59 1303.5 1.88 -0.5 1.89 0.74 2 2.41 -2 -0.26 -2.52 -0.37 -1.26 -2.02 S
-2764 934.27 -0.76 -2.52 -2.78 -2.41 2.64 0.89 0.37 -1.12 1.78 1.39 1.37 -0.13 2.15 2.02
--2.39 -0.39 -1.52 -0.37 0 1.5 0.39 2.02 -1.25 -0.87 S
-2916.08 1408.05 2.02 -5.55 1.63 -5.66 S
-2952.45 1340.91 2.63 -0.63 S
-2959.61 1334.09 1.76 -1.5 2.15 -2.02 S
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--1.39 3.78 -1.63 2.13 -0.52 -2.39 -0.62 -2.25 0 -2.54 1.02 -4.41 0.63 -3.52 S
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--2.78 2.52 -2.12 0.5 0.5 -2.15 2.13 -2.75 3.14 -2.28 0.89 -2.25 2.76 -1.91 2.91 -2.89 S
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--1.89 0.5 -1.39 1.39 0.13 0.87 -2.89 1.79 -2.52 2.12 -0.76 2.52 -1.76 2.91 -2.4 0.37
--3.76 1.52 -4.29 2.02 -2.13 2.26 -4.28 2.28 -3.91 1.76 S
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--1 -1.02 1.87 -1 1.65 1 2.25 -0.37 3.15 -1.25 S
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-4.02 1.39 S
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-3.02 -0.76 3.52 -0.87 2.91 -0.62 S
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--2.91 0.76 -2.13 -0.76 -1.02 -1.25 -2.25 -0.39 -1.76 0.52 -1.65 -0.76 -1.63 -0.52 2.26 -1.89
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--2.78 1.65 -2.26 2 -1.39 2.15 -1.13 2.38 S
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--1.02 -0.89 0.76 -1.13 S
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--1.25 0 -0.5 -2.02 -1 0.63 -1.52 0.13 -0.24 -2.52 S
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-0 -2.64 2.78 -0.24 S
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--0.89 1.76 -2.13 0.87 -1.39 0 -1.25 -1.37 -0.89 0.87 1.15 1.39 S
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--1.65 -2.15 -1.99 -1.75 -2.28 -1.76 S
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--1.89 -1.12 1.5 -2.02 1.78 -0.11 -2.14 -2.54 -1.26 -2.63 -2.02 0.11 S
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--0.87 -1.91 -2.02 -1.12 S
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-0.63 2.25 0 2.39 -0.11 2.41 -0.63 2.26 -2.02 2.14 -2.02 -2.02 -1.39 -0.5 -1.12 0.37 S
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--1 1.76 0.24 2.91 1.26 2.52 -2.89 -1.25 -3.28 -0.76 -2.52 -0.26 -2.02 0.76 -2.26 -0.26
--1.75 -1.62 S
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--2.02 -1.39 -0.76 -2.02 S
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--0.24 1.52 -2.52 -0.76 -2.14 0.39 -2.02 -0.89 -0.63 0.89 -2.75 0 0.13 -2.41 S
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--2.15 -1.62 -2.02 -1.02 -1.75 -1 -0.76 -1.12 -2 -1.02 S
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-0.63 -0.11 0.5 -0.26 0.63 -0.26 0.63 -0.24 0.63 -0.13 S
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-1.63 2.13 0.52 0.26 0.63 0.37 0.87 0.26 0.89 0.24 0.63 -0.24 0.5 -0.26 0.63 -0.24
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-2.12 3.4 -1.75 -3.54 -1.75 -3.4 -1.52 -2.52 -1.5 -2.65 -1.76 -2.63 -1.89 -2.64 -1.13 -1.26
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--0.87 -1.49 -0.76 -1.39 -1.76 -2.52 -1.75 -2.64 -1.26 -1.89 -1.39 -2.02 1.39 0.99 S
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-0.74 -0.26 -2.63 -2.88 -2.52 -2.91 -2.02 -2.78 -2.02 -2.64 -2.02 -2.76 -2.12 -2.64 2.38 2.13
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--0.37 -1.02 -1.13 -2 -1.25 -2.02 0.63 0.24 0.63 0.26 2.5 2.52 2.41 2.64 2.63 3.02
-2.78 3.14 2.75 3.15 2.91 3.17 3.02 3.52 3.02 3.54 2.52 2.88 2.65 2.91 S
-2979.62 927.84 3.26 3.77 3.28 4.04 3.28 4.02 1.89 2.28 1.76 2.26 1.89 2.41 1.52 1.99
-1.5 2.02 S
-2997.98 950.63 1.52 2.02 1.37 1.76 1.39 1.78 1.52 1.89 1.89 1.89 1.49 2.02 1.52 2.02
-1.5 2.12 1.39 2.02 1.52 2.02 1.38 2.15 1.64 2.25 1.5 2.41 1.65 2.39 1.89 2.89
-1.89 3.04 1.88 3.02 1.63 2.78 1.63 2.88 1.65 2.78 2.13 3.52 2.02 3.54 2.15 3.53
-1.89 3.39 1.75 3.41 1.89 3.41 1.89 3.52 1.75 3.41 1.76 3.54 1.13 2.13 2.25 4.3
-1.89 4.14 1.78 4.04 1.89 4.04 2 4.77 2.02 4.8 2.02 4.9 1.63 4.04 1.65 4.17
-1.63 4.14 3.52 9.33 1.75 4.64 1.26 3.41 1.13 3.27 1.25 3.41 S
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--0.39 -1.76 S
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--1.37 2.29 -0.52 -0.5 -0.37 -0.52 S
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--0.76 1.89 -0.39 1.26 -0.5 1.26 -0.37 1.26 -1.65 3.54 -1.63 3.53 -1.63 3.52 -0.26 -0.12
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--1 1.76 -1.13 1.91 1 -2.54 0.89 -2.52 0.86 -2.39 S
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--0.87 3.14 -1 3.17 -1.02 3.25 -1 3.28 -1.39 3.8 -1.26 3.78 -1.39 3.77 -1.39 3.64
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--1.26 3.27 -1.25 3.15 -1.13 3.14 S
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--1 4.3 -0.5 2.13 -1.02 2.91 -0.87 2.88 -0.89 2.78 -0.87 2.78 -0.89 2.65 S
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-0.26 2 1 6.81 0.37 3.41 0.52 3.27 0.36 3.26 0.5 4.16 S
-3116.36 1222.61 0.39 4.17 0.5 4.02 0.74 8.07 0.13 2.39 0.13 2.28 0.13 2.39 0.13 2.26
-0.11 2.15 0.13 2.28 0.13 2.13 0 2.14 0.13 2.15 0.13 2.13 S
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-4.27 -0.63 4.15 -0.52 4.27 -0.37 S
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--0.74 1.02 -0.75 0.99 -0.89 1.02 -0.76 1 -0.86 1.02 -0.76 1 -0.87 1 -0.89 1.02
--0.89 1.13 -0.87 1.02 -0.89 1.13 -0.87 1.13 -1.02 1 -0.87 1.15 S
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--2.02 2.02 -1.89 2.12 -2 2.15 -2.02 2.15 -2.15 2.25 -2.13 2.15 -2.02 2.15 -2.15 2.26
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--4.54 2.91 -4.52 2.89 -2.15 1.28 S
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--1.89 1.13 -1.75 1.13 -1.89 1.02 -1.89 1.13 -1.76 1 -1.75 1.02 -1.76 1 -1.75 0.89
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-1.76 -1.13 1.76 -1 1.63 -1.12 1.78 -1.02 7.29 -4.77 3.65 -2.41 S
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--6.27 1.39 -6.16 1.37 -6.18 1.26 -6.17 1.28 -5.77 1 -5.92 1.13 -5.77 0.89 -5.93 1
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--0.13 3.51 -0.11 0.76 -0.26 1.52 S
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-0.52 3.02 f*
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-960.051 345.273 138.777 85.8047 re
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-K
-960.051 345.273 138.777 85.8047 re
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-1098.83 345.273 138.777 85.8047 re
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-1098.83 345.273 138.777 85.8047 re
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-f*
-K
-1237.61 345.273 138.781 85.8047 re
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-7 193 59 rG
-1376.39 345.273 138.777 85.8047 re
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-1515.17 345.273 138.797 85.8047 re
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-1653.97 345.273 138.777 85.8047 re
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-2209.12 345.273 138.777 85.8047 re
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-2347.89 345.273 138.777 85.8047 re
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--2.15 -0.46 -1.89 -0.78 -1.62 -1.23 -1.35 -1.7 -1.04 -2.23 -0.69 -2.82 -0.35 -3.47 f*
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-0.37 5.64 1.06 5.53 1.71 5.23 1.09 2.43 1.24 2.28 1.37 2.11 1.52 1.91 1.63 1.67
-1.76 1.43 1.86 1.15 2 0.87 2.08 0.52 2.19 0.2 f*
-1436.07 279.449 20.3125 6.20703 re
-f*
-1490.39 319.27 5.32 0 0 -38.93 9.27 0 0 -7.07 ^ 0 -14.15 -7.51 0
-^ -25.17 0 0 7.07 ^ 0 26.11 -18.55 -26.11 -6.62 0 0 0.89
-27.37 38.05 f*
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-0.37 5.64 1.07 5.53 1.71 5.23 1.09 2.43 1.23 2.28 1.37 2.11 1.52 1.91 1.63 1.67
-1.75 1.43 1.87 1.15 1.99 0.87 2.09 0.52 2.2 0.2 f*
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--0.93 2.3 -0.79 2.48 -0.62 2.64 -0.8 5.66 -0.26 6.12 0.08 3.64 0.29 3.46 0.45 3.27
-0.63 3.06 0.8 2.87 0.98 2.67 1.15 2.43 1.3 2.21 1.48 1.98 1.61 1.73 1.78 1.48
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-2.45 -1.91 2.02 -2.3 1.58 -2.62 1.08 -2.89 0.61 -3.08 f*
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-1.74 1.43 1.89 1.15 1.97 0.87 2.11 0.52 2.17 0.2 f*
-1852.21 279.449 20.3125 6.20703 re
-f*
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-2.93 5.6 3.45 5.9 9.13 14.39 -32.68 0 0 7.08 f*
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-0.37 5.64 1.06 5.53 1.71 5.23 1.09 2.43 1.24 2.28 1.39 2.11 1.49 1.91 1.63 1.67
-1.75 1.43 1.89 1.15 1.98 0.87 2.08 0.52 2.19 0.2 f*
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-1.07 1.54 1.23 1.41 1.39 1.32 1.52 1.15 1.65 1.02 1.8 0.87 1.91 0.7 2.04 0.5
-2.16 0.32 2.26 0.11 f*
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-1.76 1.43 1.87 1.15 1.99 0.87 2.09 0.52 2.2 0.2 f*
-2218.21 279.449 20.3086 6.20703 re
-f*
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-1.06 1.54 1.24 1.41 1.37 1.32 1.54 1.15 1.65 1.02 1.8 0.87 1.91 0.7 2.04 0.5
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-2299.04 319.27 31.36 0 0 -7.08 -25.2 0 -2.2 -17.25 2.17 1.54 2.56 1.28 3.08 0.84
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--1.52 -0.26 -1.39 -0.43 -1.3 -0.61 -2.61 -1.8 -2.97 -2.56 -6.62 0 4.43 32.73 f*
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-2.47 1.34 2.71 0.87 2.91 0.3 f*
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--9.42 0 0 59.54 f*
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--17.08 -59.54 -10.59 0 -12.37 44.81 -11.2 -44.81 -10.59 0 -17.08 59.54 f*
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--9.45 0 0 59.54 f*
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--9.44 0 0 59.54 f*
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-910.94 3091 24.17 -1.76 11.77 -0.84 S
-964.82 3087.07 18.23 -1.32 17.69 -1.29 S
-1018.71 3083.14 12.28 -0.89 23.63 -1.72 S
-1072.59 3079.21 6.34 -0.46 29.57 -2.15 S
-1126.48 3075.3 0.39 -0.04 35.52 -2.59 S
-1180.36 3071.38 35.92 -2.63 S
-1234.22 3067.45 35.94 -2.62 S
-1288.11 3063.52 30.52 -2.24 5.4 -0.39 S
-1342 3059.59 24.56 -1.8 11.35 -0.82 S
-1395.88 3055.67 18.62 -1.37 17.3 -1.25 S
-1449.76 3051.73 12.67 -0.93 23.25 -1.7 S
-1503.64 3047.8 6.73 -0.47 29.19 -2.12 S
-1557.51 3043.88 0.8 -0.04 35.13 -2.56 S
-1611.39 3039.95 35.94 -2.6 S
-1665.28 3036.02 35.92 -2.6 S
-1719.16 3032.12 30.93 -2.26 4.99 -0.36 S
-1773.04 3028.19 24.98 -1.82 10.93 -0.8 S
-1826.93 3024.26 19.03 -1.39 16.88 -1.23 S
-1880.79 3020.33 13.11 -0.95 22.84 -1.67 S
-1934.68 3016.41 7.16 -0.52 28.78 -2.11 S
-1988.56 3012.48 1.21 -0.09 34.7 -2.54 S
-2042.45 3008.55 35.91 -2.63 S
-2096.33 3004.62 35.92 -2.61 S
-2150.21 3000.7 31.32 -2.28 4.6 -0.33 S
-2204.1 2996.77 25.37 -1.84 10.54 -0.76 S
-2257.96 2992.84 19.45 -1.41 16.49 -1.19 S
-2311.85 2988.91 13.49 -0.98 22.42 -1.63 S
-2365.73 2985 7.55 -0.57 28.36 -2.06 S
-2419.62 2981.08 1.61 -0.13 34.31 -2.5 S
-2473.5 2977.15 35.92 -2.62 S
-2527.39 2973.22 35.91 -2.63 S
-2581.25 2969.29 31.73 -2.32 4.21 -0.3 S
-2635.13 2965.37 25.79 -1.89 10.13 -0.74 S
-2689.02 2961.44 19.84 -1.45 16.08 -1.17 S
-2742.91 2957.51 13.89 -1 22.03 -1.61 S
-2796.79 2953.58 7.95 -0.57 27.97 -2.04 S
-2850.67 2949.66 2 -0.13 33.92 -2.47 S
-2904.54 2945.72 35.94 -2.6 S
-2958.42 2941.82 35.93 -2.62 S
-3012.3 2937.89 32.12 -2.35 S
-255 0 r6
-695.42 3155.51 35.79 -4.04 S
-749.11 3149.46 35.79 -4.04 S
-802.78 3143.4 35.8 -4.03 S
-856.46 3137.35 30.71 -3.47 5.08 -0.57 S
-910.16 3131.29 24.95 -2.82 10.84 -1.22 S
-963.84 3125.24 19.21 -2.17 16.58 -1.87 S
-1017.51 3119.18 13.48 -1.52 22.34 -2.52 S
-1071.2 3113.13 7.73 -0.87 28.06 -3.17 S
-1124.89 3107.07 1.98 -0.22 33.81 -3.82 S
-1178.58 3101.02 35.79 -4.04 S
-1232.25 3094.96 35.8 -4.04 S
-1285.94 3088.91 32.68 -3.69 3.1 -0.35 S
-1339.63 3082.86 26.93 -3.04 8.86 -1 S
-1393.32 3076.8 21.18 -2.38 14.61 -1.65 S
-1446.98 3070.75 15.45 -1.76 20.33 -2.28 S
-1500.67 3064.7 9.7 -1.11 26.09 -2.93 S
-1554.36 3058.64 3.95 -0.46 31.84 -3.58 S
-1608.05 3052.58 35.79 -4.04 S
-1661.71 3046.53 35.79 -4.04 S
-1715.41 3040.47 34.68 -3.93 1.11 -0.11 S
-1769.1 3034.42 28.93 -3.28 6.86 -0.76 S
-1822.77 3028.36 23.2 -2.62 12.61 -1.41 S
-1876.46 3022.31 17.44 -1.98 18.34 -2.08 S
-1930.14 3016.23 11.7 -1.3 24.09 -2.74 S
-1983.83 3010.18 5.95 -0.65 29.84 -3.39 S
-2037.5 3004.12 0.21 -0.02 35.59 -4.01 S
-2091.19 2998.07 35.79 -4.03 S
-2144.88 2992.01 35.79 -4.04 S
-2198.57 2985.96 30.91 -3.47 4.88 -0.57 S
-2252.23 2979.91 25.18 -2.82 10.63 -1.21 S
-2305.92 2973.85 19.42 -2.2 16.37 -1.84 S
-2359.61 2967.79 13.68 -1.54 22.11 -2.49 S
-2413.3 2961.74 7.92 -0.89 27.87 -3.14 S
-2466.97 2955.68 2.19 -0.24 33.59 -3.8 S
-2520.66 2949.63 35.79 -4.04 S
-2574.35 2943.58 35.78 -4.04 S
-2628.04 2937.52 32.88 -3.71 2.91 -0.33 S
-2681.71 2931.46 27.15 -3.06 8.63 -0.97 S
-2735.39 2925.41 21.4 -2.41 14.39 -1.62 S
-2789.08 2919.36 15.65 -1.75 20.14 -2.28 S
-2842.75 2913.3 9.92 -1.11 25.89 -2.93 S
-2896.44 2907.25 4.17 -0.48 31.62 -3.56 S
-2950.13 2901.2 35.79 -4.04 S
-3003.82 2895.14 35.79 -4.04 S
-255 0 r5
-695.42 3145.27 35.83 -3.75 S
-749.16 3139.65 35.83 -3.73 S
-802.89 3134.05 35.82 -3.76 S
-856.62 3128.43 30.55 -3.19 5.28 -0.54 S
-910.35 3122.83 24.76 -2.6 11.07 -1.15 S
-964.08 3117.21 18.97 -1.98 16.84 -1.76 S
-1017.82 3111.61 13.17 -1.39 22.63 -2.37 S
-1071.55 3105.99 7.38 -0.76 28.43 -2.97 S
-1125.29 3100.39 1.58 -0.18 34.22 -3.57 S
-1179.02 3094.77 35.8 -3.73 S
-1232.75 3089.17 35.8 -3.75 S
-1286.48 3083.55 32.14 -3.36 3.67 -0.37 S
-1340.21 3077.95 26.34 -2.75 9.47 -1 S
-1393.95 3072.33 20.55 -2.15 15.25 -1.58 S
-1447.68 3066.73 14.75 -1.57 21.05 -2.19 S
-1501.39 3061.11 8.98 -0.93 26.84 -2.8 S
-1555.12 3055.49 3.19 -0.32 32.64 -3.41 S
-1608.86 3049.89 35.83 -3.73 S
-1662.59 3044.27 35.83 -3.73 S
-1716.32 3038.67 33.77 -3.52 2.06 -0.22 S
-1770.05 3033.05 27.98 -2.91 7.86 -0.83 S
-1823.79 3027.45 22.18 -2.32 13.65 -1.41 S
-1877.52 3021.83 16.38 -1.69 19.45 -2.04 S
-1931.25 3016.23 10.59 -1.11 25.24 -2.63 S
-1984.98 3010.61 4.79 -0.5 31.04 -3.23 S
-2038.71 3005.01 35.83 -3.73 S
-2092.45 2999.39 35.83 -3.73 S
-2146.18 2993.79 35.36 -3.69 0.48 -0.04 S
-2199.91 2988.17 29.56 -3.08 6.27 -0.65 S
-2253.64 2982.57 23.77 -2.47 12.06 -1.26 S
-2307.38 2976.96 17.96 -1.87 17.86 -1.87 S
-2361.11 2971.36 12.18 -1.29 23.65 -2.45 S
-2414.84 2965.73 6.38 -0.65 29.45 -3.08 S
-2468.58 2960.13 0.58 -0.07 35.22 -3.67 S
-2522.31 2954.51 35.8 -3.73 S
-2576.04 2948.92 35.81 -3.73 S
-2629.77 2943.29 31.14 -3.25 4.66 -0.48 S
-2683.5 2937.7 25.35 -2.64 10.46 -1.11 S
-2737.24 2932.07 19.55 -2.04 16.25 -1.69 S
-2790.97 2926.48 13.76 -1.43 22.04 -2.32 S
-2844.71 2920.86 7.96 -0.83 27.84 -2.91 S
-2898.44 2915.25 2.17 -0.24 33.64 -3.52 S
-2952.17 2909.63 35.8 -3.73 S
-3005.88 2904.04 35.83 -3.75 S
-128 0 255 rG
-695.42 3086.66 35.96 -2.11 S
-749.35 3083.48 35.95 -2.11 S
-803.28 3080.32 35.96 -2.11 S
-857.21 3077.15 29.96 -1.76 6 -0.35 S
-911.16 3073.98 23.95 -1.41 11.98 -0.69 S
-965.08 3070.81 17.97 -1.06 17.97 -1.04 S
-1019.01 3067.64 11.98 -0.71 23.98 -1.41 S
-1072.94 3064.47 5.99 -0.34 29.97 -1.78 S
-1126.87 3061.3 35.96 -2.13 S
-1180.79 3058.14 35.96 -2.13 S
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-1342.6 3048.61 23.95 -1.39 11.98 -0.72 S
-1396.53 3045.45 17.97 -1.05 17.99 -1.06 S
-1450.46 3042.27 11.98 -0.7 23.98 -1.41 S
-1504.38 3039.11 5.99 -0.34 29.97 -1.76 S
-1558.31 3035.94 35.96 -2.11 S
-1612.24 3032.77 35.96 -2.1 S
-1666.17 3029.6 35.96 -2.11 S
-1720.12 3026.43 29.97 -1.76 5.96 -0.34 S
-1774.04 3023.27 23.98 -1.41 11.96 -0.7 S
-1827.97 3020.09 17.99 -1.06 17.97 -1.05 S
-1881.9 3016.93 12 -0.72 23.96 -1.39 S
-1935.83 3013.76 6.01 -0.35 29.95 -1.78 S
-1989.75 3010.59 0.02 0 35.94 -2.13 S
-2043.68 3007.42 35.96 -2.13 S
-2097.61 3004.25 35.96 -2.12 S
-2151.56 3001.08 29.97 -1.78 5.96 -0.35 S
-2205.49 2997.92 23.98 -1.41 11.98 -0.71 S
-2259.42 2994.73 17.99 -1.04 17.97 -1.06 S
-2313.34 2991.55 12 -0.7 23.96 -1.4 S
-2367.27 2988.39 6.01 -0.35 29.95 -1.76 S
-2421.2 2985.22 0.02 0 35.94 -2.11 S
-2475.13 2982.05 35.96 -2.11 S
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-2583 2975.72 29.97 -1.76 5.97 -0.35 S
-2636.93 2972.55 23.98 -1.41 11.98 -0.7 S
-2690.86 2969.38 18 -1.06 17.96 -1.04 S
-2744.79 2966.21 12 -0.71 23.96 -1.39 S
-2798.72 2963.04 6.01 -0.35 29.95 -1.76 S
-2852.65 2959.87 0.02 0 35.94 -2.12 S
-2906.6 2956.71 35.93 -2.13 S
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-3014.46 2950.37 29.96 -1.78 S
-11.1111 w
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-47.94 -85.13 47.94 -28.17 47.94 48 47.94 -68.27 47.94 13.57 47.93 17.64 47.94 -51.41 47.94 -45.18
-47.94 27.59 47.94 34.13 S
-255 0 r6
-695.42 3127.91 47.94 -138.06 47.94 72.7 47.93 -9.83 47.94 163.39 47.94 -83.59 47.94 -143.47 47.94 35.63
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-47.94 77.73 47.94 -101.43 47.94 -36.09 47.94 52.36 47.94 -81.51 47.93 77.3 47.94 -198.03 47.94 173
-47.94 37.91 47.94 -25.13 S
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-47.94 -43.39 47.94 -101.82 47.94 -14.5 47.94 88.93 47.94 -48.7 47.93 -152.13 47.94 2.22 47.94 -28.82
-47.94 68.3 47.94 -9.68 S
-128 0 255 rG
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-47.94 50.72 47.94 -2.87 47.94 -19.79 47.94 -11.83 47.94 -3.21 47.94 2.45 47.93 23.72 47.94 -24.13
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-47.94 -47.87 47.94 -12.7 47.94 11.91 47.94 -0.62 47.94 -24.46 47.93 -12.3 47.94 44.45 47.94 -39.35
-47.94 31.64 47.94 -19.33 S
-K
-1766.21 2210.39 10.39 0 21.31 -35.35 20.79 35.35 10.41 0 -26.52 -44.73 0 -28.06 -9.36 0
-^ -27.04 44.73 f*
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--1.41 1.9 -1.22 2.06 -1.04 2.24 -0.84 2.38 -0.67 2.56 -0.48 2.7 -0.28 2.82 -0.11 2.97
-0.17 4.25 0.52 3.87 0.8 3.45 1.09 3.06 1.3 2.71 1.52 2.37 1.7 2.06 1.8 1.76
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--0.74 -1.62 -0.61 -1.76 -0.43 -1.91 -0.3 -2.06 30.68 0 -0.11 2.15 -0.33 1.98 -0.52 1.8
--0.67 1.65 -0.82 1.47 -0.96 1.3 -1.04 1.17 -1.15 1.02 -2.43 1.63 -2.49 1.11 -2.41 0.65
--2.15 0.2 0.52 7.79 1.8 -0.07 1.87 -0.2 1.91 -0.39 1.96 -0.57 1.93 -0.75 1.89 -1.02
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-2.25 0.2 2.13 0.57 1.95 0.91 1.78 1.26 1.63 1.57 1.43 1.87 1.28 2.14 1.07 2.41
-8.31 0 f*
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-1.32 1.15 1.52 1.06 1.69 0.93 1.91 0.8 2.08 0.63 2.3 0.48 2.49 0.3 2.71 0.09
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--2.26 0.06 -1.78 0.2 -1.35 0.37 -1.07 0.61 -0.82 0.87 -0.72 1.2 -1.39 3.45 -4.43 -3.23
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--1.91 0.39 -1.74 0.55 -1.52 0.65 -1.36 0.78 -1.2 0.87 -1.02 1 -0.87 1.06 -0.74 1.13
--0.61 1.21 -0.46 1.24 -0.59 2.64 -0.2 2.72 7.81 0 0.17 -1.55 0.57 -1.43 0.93 -1.32
-1.24 -1.17 1.58 -0.96 1.87 -0.73 2.14 -0.48 2.41 -0.18 3.47 0.45 3.04 0.89 2.61 1.26
-2.13 1.5 1.66 1.66 1.2 1.76 0.72 1.76 0.24 1.63 0 10.42 -3.91 -1.45 -3.23 -0.76
--9.48 -1.43 -2.8 -0.84 -2.17 -1 -1.65 -1.11 -1.17 -1.22 -0.8 -1.3 -0.48 -1.41 -0.24 -1.48
--0.04 -1.52 -7.81 0 0.21 3.88 0.65 3.17 0.5 1.32 0.59 1.2 0.7 1.07 0.8 0.93
-0.91 0.82 1 0.72 2.32 1.21 2.71 0.98 3.13 0.8 13.52 2.09 3.25 0.87 1.17 0.5
-0.91 0.52 0.65 0.55 0.43 0.56 0.26 0.59 0.07 0.58 0 4.67 -0.13 0.89 -0.48 1.06
--0.8 1.11 -1.17 1.11 -1.56 1.02 -2 0.83 -2.41 0.54 -2.89 0.22 -3.06 -0.24 -2.61 -0.65
--2.15 -0.98 -1.73 -1.26 -1.3 -1.46 -0.91 -1.56 -0.54 -1.63 -0.18 -1.58 -8.31 0 f*
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-2.06 0.57 1.8 0.05 1.54 -0.33 1.28 -0.55 0 -7.79 -4.14 -0.43 -1.82 -0.39 -1.67 -0.52
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--0.41 -1.5 -0.29 -1.61 -0.21 -3.52 0 -29.1 -8.34 0 0 52.5 f*
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-1.19 2.19 1.02 2.3 6.25 23.39 1.02 2.7 1.13 2.21 1.21 1.8 1.32 1.41 1.41 1.04
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-0 -8.34 -52.49 0 f*
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--0.72 2.25 -0.43 2.37 -0.15 2.41 f*
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--0.72 2.28 -0.43 2.34 -0.15 2.41 f*
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--0.72 2.28 -0.43 2.35 -0.15 2.41 f*
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-f*
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--53.02 -17.67 f*
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--5.95 -2.84 -6.27 -2.45 -6.42 -2 -6.29 -1.52 -5.99 -0.96 -2.78 -0.24 -2.63 -0.09 -3.32 0.09
--3.26 0.24 -3.25 0.41 -3.21 0.55 -6.29 1.52 -6.14 2 -5.95 2.45 -5.73 2.84 -5.47 3.15
--5.21 3.38 f*
-201.63 3404.36 0.09 1.74 0.28 1.69 0.41 1.63 0.59 1.57 0.74 1.49 0.87 1.41 0.98 1.32
-1.13 1.24 1.21 1.11 1.32 1 1.41 0.87 1.5 0.74 1.58 0.56 1.63 0.44 1.69 0.26
-1.74 0.09 1.73 -0.09 1.7 -0.26 1.63 -0.44 1.56 -0.56 1.5 -0.74 1.41 -0.87 1.32 -1
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--1.73 -0.09 0 7.29 1.91 0.2 1.82 0.61 1.67 0.96 1.48 1.21 1.24 1.5 0.93 1.67
-0.61 1.82 0.22 1.91 -0.22 1.91 -0.61 1.82 -0.93 1.67 -1.24 1.47 -1.48 1.24 -1.67 0.96
--1.82 0.58 -1.91 0.22 -1.93 -0.22 -1.8 -0.58 -1.7 -0.96 -1.47 -1.24 -1.24 -1.47 -0.93 -1.67
--0.61 -1.82 -0.2 -1.91 0.2 -1.91 0.61 -1.82 0.93 -1.67 1.24 -1.5 1.47 -1.21 1.7 -0.96
-1.8 -0.61 1.93 -0.2 0 -7.29 -1.74 0.09 -1.69 0.28 -1.63 0.41 -1.58 0.59 -1.5 0.74
--1.41 0.87 -1.32 1 -1.21 1.11 -1.13 1.21 -0.98 1.32 -0.87 1.41 -0.74 1.5 -0.59 1.58
--0.41 1.63 -0.28 1.7 -0.09 1.73 f*
-199.02 3444.9 0 6.77 72.79 -39.52 0 -6.75 -72.79 39.49 f*
-237.5 3453.23 0.09 1.74 0.25 1.67 0.44 1.65 0.58 1.56 0.74 1.5 0.87 1.41 0.98 1.32
-1.13 1.24 1.21 1.11 1.32 1 1.41 0.86 1.5 0.72 1.58 0.58 1.63 0.43 1.69 0.26
-1.74 0.09 1.73 -0.09 1.67 -0.26 1.65 -0.43 1.56 -0.58 1.5 -0.72 1.41 -0.86 1.32 -1
-1.24 -1.11 1.11 -1.24 1 -1.32 0.87 -1.41 0.72 -1.5 0.58 -1.56 0.43 -1.65 0.26 -1.67
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--1.73 -0.09 0 7.29 1.91 0.2 1.82 0.61 1.67 0.93 1.48 1.24 1.24 1.47 0.93 1.7
-0.61 1.8 0.22 1.93 -0.22 1.91 -0.61 1.82 -0.93 1.67 -1.24 1.47 -1.48 1.24 -1.67 0.93
--1.82 0.61 -1.91 0.21 -1.93 -0.21 -1.8 -0.61 -1.7 -0.93 -1.47 -1.24 -1.24 -1.47 -0.93 -1.67
--0.61 -1.82 -0.2 -1.91 0.2 -1.93 0.61 -1.8 0.93 -1.7 1.24 -1.47 1.47 -1.24 1.7 -0.93
-1.8 -0.61 1.93 -0.2 0 -7.29 -1.74 0.09 -1.69 0.26 -1.63 0.43 -1.58 0.58 -1.5 0.74
--1.41 0.87 -1.32 0.98 -1.21 1.13 -1.13 1.21 -0.98 1.32 -0.87 1.41 -0.74 1.5 -0.58 1.59
--0.44 1.63 -0.25 1.7 -0.09 1.73 f*
-196.96 3477.15 0 5.18 6.1 4 6.18 3.43 6.23 2.87 6.18 2.32 6.08 1.78 5.93 1.26
-5.71 0.74 5.42 0.25 5.43 -0.25 5.75 -0.8 5.93 -1.32 6.04 -1.84 6.01 -2.34 5.95 -2.87
-5.73 -3.34 2.76 -1.87 2.7 -2 0 -5.18 -5.47 3.1 -5.49 2.74 -5.56 2.32 -5.64 1.91
--5.77 1.5 -5.92 1.06 -6.1 0.65 -6.32 0.24 -6.16 -0.22 -5.99 -0.58 -5.93 -1.02 -5.84 -1.43
--5.86 -1.88 -5.9 -2.32 -6.01 -2.8 -6.14 -3.26 f*
-819.18 2340.52 4.58 0 0 -56.58 -7.07 0 0 40.35 -12.48 0 0 4.99 5.04 0.58
-2.25 0.48 2.06 0.82 0.95 0.57 0.88 0.7 0.82 0.87 0.74 1.02 0.67 1.21 0.61 1.43
-0.52 1.65 0.43 1.91 f*
-862.43 2340.52 2.06 -0.09 1.95 -0.28 1.89 -0.45 1.75 -0.68 1.67 -0.84 1.54 -1.08 1.43 -1.3
-1.3 -1.52 1.19 -1.75 1.04 -2 0.93 -2.23 0.76 -2.49 0.63 -2.78 0.48 -3.04 0.32 -3.3
-0.16 -3.6 -0.11 -4.47 -0.37 -4.04 -0.59 -3.64 -0.78 -3.25 -0.96 -2.88 -1.15 -2.54 -1.29 -2.22
--1.41 -1.91 -1.54 -1.61 -1.65 -1.34 -1.71 -1.09 -1.79 -0.85 -1.84 -0.61 -1.87 -0.43 -1.87 -0.24
--1.88 -0.09 -2.89 0.22 -2.69 0.68 -2.48 1.11 -2.23 1.61 -1.98 2.08 -1.64 2.56 -1.35 3.1
--0.95 3.63 7.07 0 0.67 -2.04 0.8 -1.78 0.95 -1.5 1.09 -1.21 1.25 -0.96 1.41 -0.7
-1.58 -0.41 1.79 -0.13 1.58 0.11 1.47 0.33 1.39 0.52 1.26 0.71 1.15 0.91 1.07 1.07
-0.95 1.21 0.85 1.37 0.76 1.52 0.66 1.63 0.97 3.6 0.59 3.97 0.2 4.26 -1.96 -1.93
--1.86 -1.5 -1.76 -1.09 -1.65 -0.78 -1.54 -0.5 -1.46 -0.28 -2.66 -0.15 -2.2 0.17 -2.04 0.35
--1.89 0.54 -1.75 0.7 -1.59 0.84 -1.48 0.98 -1.3 1.11 -1.17 1.24 -1.02 1.35 -0.87 1.43
--0.72 1.52 -0.59 1.59 -0.43 1.66 -0.28 1.7 -0.15 1.76 0 1.78 7.08 0 0.21 -2.2
-0.61 -2.21 1 -2.11 1.34 -1.91 1.7 -1.63 2 -1.3 1.08 -0.48 1.17 -0.35 1.24 -0.21
-1.3 -0.08 1.3 0.08 1.21 0.21 1.17 0.35 1.11 0.48 1.99 1.3 1.67 1.63 1.37 1.91
-0.98 2.11 0.63 2.21 0.2 2.2 -0.2 2.21 -0.62 2.2 -0.98 2.11 -1.37 1.91 -1.67 1.64
--1.99 1.29 -1.11 0.48 -1.17 0.37 -1.21 0.21 -1.3 0.07 -1.3 -0.07 -1.24 -0.21 -1.17 -0.37
--1.08 -0.48 -2 -1.29 -1.7 -1.64 -1.34 -1.91 -1 -2.11 -0.61 -2.2 -0.21 -2.21 -7.08 0
-0.02 1.87 0.2 1.8 0.37 1.78 0.54 1.7 0.7 1.63 0.85 1.54 1.02 1.46 1.15 1.34
-1.31 1.21 1.43 1.11 1.57 0.96 1.69 0.83 1.8 0.65 1.93 0.48 2.02 0.28 2.14 0.11 f*
-924.83 2325.96 -7.08 0 -0.48 1.91 -0.72 1.67 -0.97 1.43 -1.17 1.18 -1.3 0.93 -1.45 0.65
--1.5 0.42 -1.56 0.13 -1.52 -0.09 -1.4 -0.28 -1.35 -0.44 -1.23 -0.63 -1.17 -0.8 -1.04 -0.96
--0.98 -1.13 -0.87 -1.28 -0.76 -1.46 -0.68 -1.58 -1.04 -3.64 -0.63 -4.19 -0.21 -4.73 1.69 1.82
-1.67 1.43 1.67 1.09 1.67 0.8 1.69 0.54 1.71 0.33 3.6 0.21 2.78 -0.26 2.87 -0.85
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--1.43 1.88 -1.74 1.61 -1.97 1.21 -2.17 0.81 -1.13 0.21 -1.15 0.07 -1.17 -0.07 -1.13 -0.21
--2.16 -0.81 -1.98 -1.21 -1.73 -1.61 -1.43 -1.88 -1.11 -2.11 -0.7 -2.26 -0.24 -2.32 0.24 -2.32
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-1.15 0.07 1.13 0.22 2.17 0.78 1.97 1.23 1.74 1.61 1.43 1.89 1.11 2.11 0.7 2.26
-0.24 2.32 7.07 0.42 -0.28 -3.32 -0.35 -1.7 -0.48 -1.65 -0.63 -1.64 -0.79 -1.59 -0.93 -1.52
--1.06 -1.43 -1.24 -1.32 -1.37 -1.22 -1.54 -1.06 -1.7 -0.91 -1.84 -0.76 -2.02 -0.55 -2.17 -0.34
--2.32 -0.13 -2.56 0.16 -2.32 0.43 -2.14 0.67 -1.93 0.95 -1.75 1.18 -1.57 1.41 -1.39 1.61
--1.21 1.82 -1.04 2 -0.89 2.17 -0.74 2.34 -0.59 2.47 -0.44 2.61 -0.32 2.73 -0.24 5.75
-0.09 3.43 0.26 3.23 0.44 3.08 0.58 2.89 0.76 2.69 0.93 2.5 1.06 2.3 1.24 2.08
-1.37 1.84 1.54 1.63 1.67 1.41 1.82 1.15 1.96 0.93 2.08 0.65 2.23 0.39 2.34 0.15
-1.7 -0.09 1.61 -0.22 1.52 -0.37 1.46 -0.5 1.39 -0.63 1.28 -0.74 2.3 -1.78 1.89 -2.17
-1.5 -2.47 1.04 -2.71 0.57 -2.88 f*
-951.43 2340.52 2.06 -0.17 1.97 -0.5 1.87 -0.8 1.76 -1.08 1.65 -1.35 1.54 -1.58 1.43 -1.78
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--2.06 -0.2 -2.06 0.2 -1.98 0.5 -1.87 0.83 -1.75 1.11 -1.65 1.39 -1.54 1.61 -1.43 1.82
--1.28 2.02 -1.17 2.19 -1.02 2.32 -0.89 2.45 -0.72 2.54 -0.59 2.61 -0.43 2.65 -0.24 2.67
--0.09 2.65 7.48 0 0.26 -5.05 0.71 -4.54 1.15 -4 1.45 -3.36 1.71 -2.69 0.93 -1.09
-0.96 -0.91 1 -0.71 1 -0.52 1.02 -0.31 1.02 -0.11 1.02 0.11 1.02 0.31 1 0.52
-0.99 0.71 0.96 0.91 0.93 1.09 1.71 2.69 1.46 3.36 1.15 4 0.71 4.54 0.26 5.05
--0.26 5.05 -0.71 4.5 -1.15 3.91 -1.46 3.29 -1.71 2.63 -0.93 1.04 -0.96 0.87 -0.99 0.7
--1 0.5 -1.02 0.3 -1.02 0.09 -1.02 -0.09 -1.02 -0.3 -1 -0.5 -1 -0.7 -0.96 -0.87
--0.93 -1.04 -1.71 -2.63 -1.45 -3.29 -1.15 -3.91 -0.71 -4.5 -0.26 -5.05 -7.48 0 0.09 2.67
-0.24 2.65 0.43 2.62 0.59 2.59 0.72 2.5 0.89 2.41 1.02 2.28 1.17 2.15 1.28 2
-1.43 1.78 1.54 1.58 1.65 1.35 1.75 1.08 1.87 0.8 1.98 0.5 2.06 0.17 f*
-1298.57 2340.52 4.58 0 0 -56.58 -7.07 0 0 40.35 -12.48 0 0 4.99 5.04 0.58
-2.25 0.48 2.06 0.82 0.95 0.57 0.88 0.7 0.82 0.87 0.76 1.02 0.67 1.21 0.58 1.43
-0.52 1.65 0.43 1.91 f*
-1341.82 2340.52 2.06 -0.09 1.98 -0.28 1.87 -0.45 1.75 -0.68 1.67 -0.84 1.54 -1.08 1.43 -1.3
-1.32 -1.52 1.17 -1.75 1.07 -2 0.91 -2.23 0.79 -2.49 0.63 -2.78 0.46 -3.04 0.32 -3.3
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--1.89 -0.09 -2.86 0.22 -2.71 0.68 -2.48 1.11 -2.23 1.61 -1.95 2.08 -1.67 2.56 -1.33 3.1
--0.97 3.63 7.07 0 0.67 -2.04 0.83 -1.78 0.93 -1.5 1.11 -1.21 1.23 -0.96 1.41 -0.7
-1.61 -0.41 1.78 -0.13 1.59 0.11 1.47 0.33 1.37 0.52 1.25 0.71 1.17 0.91 1.05 1.07
-0.95 1.21 0.87 1.37 0.74 1.52 0.65 1.63 0.97 3.6 0.61 3.97 0.2 4.26 -1.97 -1.93
--1.87 -1.5 -1.74 -1.09 -1.65 -0.78 -1.56 -0.5 -1.46 -0.28 -2.64 -0.15 -2.19 0.17 -2.04 0.35
--1.91 0.54 -1.73 0.7 -1.61 0.84 -1.46 0.98 -1.32 1.11 -1.15 1.24 -1.02 1.35 -0.89 1.43
--0.72 1.52 -0.59 1.59 -0.43 1.66 -0.28 1.7 -0.16 1.76 0.02 1.78 7.06 0 0.21 -2.2
-0.61 -2.21 1 -2.11 1.37 -1.91 1.67 -1.63 2 -1.3 1.11 -0.48 1.15 -0.35 1.24 -0.21
-1.3 -0.08 1.3 0.08 1.23 0.21 1.17 0.35 1.09 0.48 1.99 1.3 1.7 1.63 1.34 1.91
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--1.99 1.29 -1.09 0.48 -1.17 0.37 -1.23 0.21 -1.3 0.07 -1.3 -0.07 -1.24 -0.21 -1.15 -0.37
--1.11 -0.48 -2 -1.29 -1.67 -1.64 -1.37 -1.91 -1 -2.11 -0.61 -2.2 -0.21 -2.21 -7.06 0
-0 1.87 0.2 1.8 0.38 1.78 0.54 1.7 0.7 1.63 0.88 1.54 0.99 1.46 1.15 1.34
-1.3 1.21 1.43 1.11 1.56 0.96 1.69 0.83 1.83 0.65 1.9 0.48 2.05 0.28 2.12 0.11 f*
-1368.01 2340.52 37.85 0 0 -5.84 -5.36 -8.05 -4.34 -6.95 -3.49 -6.14 -2.76 -5.62 -2.2 -5.47
--1.8 -5.59 -1.52 -6.08 -1.41 -6.84 -7.49 0 2.13 7.86 2.04 6.63 2.15 5.77 2.36 5.34
-2.75 5.25 3.25 5.55 8.62 13.52 -30.79 0 0 6.66 f*
-1430.82 2340.52 2.06 -0.17 1.97 -0.5 1.86 -0.8 1.76 -1.08 1.67 -1.35 1.54 -1.58 1.41 -1.78
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--1.15 -2.19 -1.3 -2.02 -1.41 -1.82 -1.54 -1.61 -1.67 -1.39 -1.76 -1.11 -1.86 -0.83 -1.97 -0.5
--2.06 -0.2 -2.06 0.2 -1.95 0.5 -1.87 0.83 -1.78 1.11 -1.65 1.39 -1.54 1.61 -1.41 1.82
--1.3 2.02 -1.15 2.19 -1.04 2.32 -0.87 2.45 -0.74 2.54 -0.59 2.61 -0.41 2.65 -0.26 2.67
--0.09 2.65 7.48 0 0.26 -5.05 0.74 -4.54 1.13 -4 1.46 -3.36 1.71 -2.69 0.93 -1.09
-0.95 -0.91 1 -0.71 1.02 -0.52 0.99 -0.31 1.02 -0.11 1.02 0.11 1.02 0.31 1.02 0.52
-0.97 0.71 0.98 0.91 0.93 1.09 1.7 2.69 1.48 3.36 1.13 4 0.73 4.54 0.26 5.05
--0.26 5.05 -0.73 4.5 -1.13 3.91 -1.48 3.29 -1.7 2.63 -0.93 1.04 -0.98 0.87 -0.97 0.7
--1.02 0.5 -1.02 0.3 -1.02 0.09 -1.02 -0.09 -0.99 -0.3 -1.02 -0.5 -1 -0.7 -0.95 -0.87
--0.93 -1.04 -1.71 -2.63 -1.46 -3.29 -1.13 -3.91 -0.74 -4.5 -0.26 -5.05 -7.48 0 0.09 2.67
-0.26 2.65 0.41 2.62 0.59 2.59 0.74 2.5 0.87 2.41 1.04 2.28 1.15 2.15 1.3 2
-1.41 1.78 1.54 1.58 1.65 1.35 1.78 1.08 1.87 0.8 1.95 0.5 2.06 0.17 f*
-1777.95 2340.52 4.58 0 0 -56.58 -7.07 0 0 40.35 -12.48 0 0 4.99 5.04 0.58
-2.25 0.48 2.07 0.82 0.95 0.57 0.89 0.7 0.8 0.87 0.76 1.02 0.67 1.21 0.59 1.43
-0.52 1.65 0.43 1.91 f*
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-1.3 -1.52 1.17 -1.75 1.07 -2 0.91 -2.23 0.79 -2.49 0.63 -2.78 0.48 -3.04 0.32 -3.3
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--1.86 -0.09 -2.89 0.22 -2.69 0.68 -2.5 1.11 -2.23 1.61 -1.96 2.08 -1.67 2.56 -1.33 3.1
--0.97 3.63 7.07 0 0.7 -2.04 0.8 -1.78 0.95 -1.5 1.09 -1.21 1.23 -0.96 1.43 -0.7
-1.58 -0.41 1.78 -0.13 1.59 0.11 1.48 0.33 1.37 0.52 1.25 0.71 1.17 0.91 1.07 1.07
-0.95 1.21 0.85 1.37 0.74 1.52 0.65 1.63 1 3.6 0.59 3.97 0.2 4.26 -1.97 -1.93
--1.84 -1.5 -1.76 -1.09 -1.65 -0.78 -1.56 -0.5 -1.46 -0.28 -2.64 -0.15 -2.19 0.17 -2.04 0.35
--1.89 0.54 -1.75 0.7 -1.61 0.84 -1.46 0.98 -1.32 1.11 -1.15 1.24 -1.02 1.35 -0.87 1.43
--0.74 1.52 -0.59 1.59 -0.44 1.66 -0.28 1.7 -0.13 1.76 0 1.78 7.07 0 0.2 -2.2
-0.63 -2.21 1 -2.11 1.34 -1.91 1.67 -1.63 2 -1.3 1.11 -0.48 1.17 -0.35 1.24 -0.21
-1.28 -0.08 1.3 0.08 1.23 0.21 1.17 0.35 1.11 0.48 1.97 1.3 1.69 1.63 1.35 1.91
-1 2.11 0.61 2.21 0.21 2.2 -0.21 2.21 -0.61 2.2 -1 2.11 -1.35 1.91 -1.69 1.64
--1.97 1.29 -1.11 0.48 -1.17 0.37 -1.23 0.21 -1.3 0.07 -1.28 -0.07 -1.24 -0.21 -1.17 -0.37
--1.11 -0.48 -2 -1.29 -1.67 -1.64 -1.34 -1.91 -1 -2.11 -0.63 -2.2 -0.2 -2.21 -7.07 0
-0.02 1.87 0.17 1.8 0.38 1.78 0.54 1.7 0.69 1.63 0.88 1.54 0.99 1.46 1.17 1.34
-1.31 1.21 1.43 1.11 1.57 0.96 1.67 0.83 1.82 0.65 1.91 0.48 2.04 0.28 2.12 0.11 f*
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--2 0.55 -1.87 0.71 -1.7 0.91 -1.52 1.02 -1.39 1.17 -1.21 1.26 -1.08 1.34 -0.91 1.41
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--1.74 -1.37 -1.45 -1.67 -1.09 -1.89 -0.7 -2.13 -0.26 -2.28 -7.48 0 0.18 2.28 0.5 2.17
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--0.93 1.5 -1.23 1.24 -1.48 1.02 -1.69 0.71 -1.87 0.46 -1.98 0.15 -1.97 -0.15 -1.87 -0.46
--1.69 -0.71 -1.48 -1.02 -1.23 -1.24 -0.93 -1.5 -0.59 -1.71 -0.22 -1.93 -7.07 0 0.08 1.73
-0.26 1.65 0.42 1.54 0.56 1.46 0.72 1.32 0.84 1.24 0.96 1.11 1.11 1.02 1.19 0.89
-1.33 0.8 1.39 0.65 1.49 0.56 3.23 0.74 3.47 0.26 f*
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--2.04 -0.2 -2.06 0.2 -1.98 0.5 -1.87 0.83 -1.78 1.11 -1.65 1.39 -1.54 1.61 -1.41 1.82
--1.3 2.02 -1.15 2.19 -1.02 2.32 -0.89 2.45 -0.74 2.54 -0.59 2.61 -0.41 2.65 -0.26 2.67
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-0.97 -0.91 0.98 -0.71 1.02 -0.52 1.02 -0.31 1.02 -0.11 1 0.11 1.02 0.31 1.02 0.52
-0.97 0.71 0.98 0.91 0.93 1.09 1.71 2.69 1.46 3.36 1.13 4 0.73 4.54 0.26 5.05
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--1.02 0.5 -1.02 0.3 -1 0.09 -1.02 -0.09 -1.02 -0.3 -1.02 -0.5 -0.98 -0.7 -0.97 -0.87
--0.93 -1.04 -1.71 -2.63 -1.46 -3.29 -1.13 -3.91 -0.74 -4.5 -0.26 -5.05 -7.48 0 0.08 2.67
-0.26 2.65 0.41 2.62 0.59 2.59 0.74 2.5 0.89 2.41 1.02 2.28 1.15 2.15 1.3 2
-1.41 1.78 1.54 1.58 1.65 1.35 1.78 1.08 1.87 0.8 1.98 0.5 2.06 0.17 f*
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-2.28 0.48 2.06 0.82 0.93 0.57 0.89 0.7 0.82 0.87 0.74 1.02 0.67 1.21 0.61 1.43
-0.5 1.65 0.43 1.91 f*
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--1.87 -0.09 -2.89 0.22 -2.69 0.68 -2.48 1.11 -2.23 1.61 -1.97 2.08 -1.68 2.56 -1.32 3.1
--0.97 3.63 7.07 0 0.7 -2.04 0.8 -1.78 0.96 -1.5 1.08 -1.21 1.26 -0.96 1.41 -0.7
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--1.89 0.54 -1.75 0.7 -1.61 0.84 -1.46 0.98 -1.3 1.11 -1.17 1.24 -1.02 1.35 -0.87 1.43
--0.74 1.52 -0.56 1.59 -0.44 1.66 -0.3 1.7 -0.13 1.76 0 1.78 7.08 0 0.21 -2.2
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--1.99 1.29 -1.11 0.48 -1.17 0.37 -1.23 0.21 -1.29 0.07 -1.3 -0.07 -1.24 -0.21 -1.17 -0.37
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-0.02 1.87 0.2 1.8 0.37 1.78 0.52 1.7 0.71 1.63 0.85 1.54 1.02 1.46 1.15 1.34
-1.31 1.21 1.43 1.11 1.56 0.96 1.7 0.83 1.8 0.65 1.93 0.48 2.02 0.28 2.14 0.11 f*
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--1.87 -0.09 -2.88 0.22 -2.7 0.68 -2.5 1.11 -2.23 1.61 -1.96 2.08 -1.67 2.56 -1.32 3.1
--0.98 3.63 7.08 0 0.67 -2.04 0.82 -1.78 0.93 -1.5 1.11 -1.21 1.23 -0.96 1.43 -0.7
-1.58 -0.41 1.78 -0.13 1.59 0.11 1.47 0.33 1.37 0.52 1.26 0.71 1.17 0.91 1.06 1.07
-0.93 1.21 0.87 1.37 0.73 1.52 0.66 1.63 0.99 3.6 0.59 3.97 0.2 4.26 -1.98 -1.93
--1.87 -1.5 -1.73 -1.09 -1.65 -0.78 -1.56 -0.5 -1.46 -0.28 -2.64 -0.15 -2.19 0.17 -2.04 0.35
--1.91 0.54 -1.73 0.7 -1.61 0.84 -1.46 0.98 -1.32 1.11 -1.16 1.24 -1.02 1.35 -0.89 1.43
--0.72 1.52 -0.59 1.59 -0.43 1.66 -0.29 1.7 -0.12 1.76 0 1.78 7.07 0 0.2 -2.2
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-1.3 -0.08 1.3 0.08 1.23 0.21 1.17 0.35 1.09 0.48 2 1.3 1.69 1.63 1.35 1.91
-0.99 2.11 0.61 2.21 0.21 2.2 -0.21 2.21 -0.61 2.2 -0.99 2.11 -1.35 1.91 -1.69 1.64
--2 1.29 -1.09 0.48 -1.17 0.37 -1.23 0.21 -1.3 0.07 -1.3 -0.07 -1.21 -0.21 -1.17 -0.37
--1.11 -0.48 -2 -1.29 -1.67 -1.64 -1.37 -1.91 -0.98 -2.11 -0.63 -2.2 -0.2 -2.21 -7.07 0
-0 1.87 0.19 1.8 0.38 1.78 0.54 1.7 0.69 1.63 0.87 1.54 1 1.46 1.17 1.34
-1.29 1.21 1.43 1.11 1.59 0.96 1.67 0.83 1.82 0.65 1.91 0.48 2.04 0.28 2.13 0.11 f*
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--1.28 2.02 -1.17 2.19 -1.02 2.32 -0.89 2.45 -0.74 2.54 -0.57 2.61 -0.43 2.65 -0.26 2.67
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-0.97 -0.91 1 -0.71 1 -0.52 1.02 -0.31 1.02 -0.11 1.02 0.11 1.02 0.31 1 0.52
-1 0.71 0.95 0.91 0.93 1.09 1.72 2.69 1.45 3.36 1.13 4 0.74 4.54 0.26 5.05
--0.26 5.05 -0.74 4.5 -1.13 3.91 -1.45 3.29 -1.72 2.63 -0.93 1.04 -0.95 0.87 -1 0.7
--1 0.5 -1.02 0.3 -1.02 0.09 -1.02 -0.09 -1.02 -0.3 -1 -0.5 -1 -0.7 -0.97 -0.87
--0.91 -1.04 -1.71 -2.63 -1.48 -3.29 -1.13 -3.91 -0.74 -4.5 -0.26 -5.05 -7.48 0 0.08 2.67
-0.26 2.65 0.43 2.62 0.57 2.59 0.74 2.5 0.89 2.41 1.02 2.28 1.17 2.15 1.28 2
-1.43 1.78 1.52 1.58 1.67 1.35 1.75 1.08 1.87 0.8 1.98 0.5 2.06 0.17 f*
-2720.31 2320.96 7.05 0 0.2 2.84 0.52 2.56 0.89 2.28 1.25 1.93 1.63 1.56 2.02 1.17
-2.36 0.71 2.78 0.24 2.15 -0.2 2 -0.54 1.84 -0.93 1.61 -1.23 1.32 -1.57 1.02 -1.84
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--0.78 -1.59 -0.63 -1.64 -0.5 -1.68 -0.61 -3.54 -0.2 -3.78 37.84 0 0 6.67 -29.94 0
-0.75 2.56 1.02 2.12 1.32 1.8 1.7 1.63 2.06 1.54 2.52 1.56 6.45 3.75 3.71 1.84
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--0.28 1.69 -0.46 1.61 -0.63 1.52 -0.78 1.43 -0.91 1.33 -1.06 1.23 -1.2 1.13 -1.3 1.02
--1.41 0.89 -1.52 0.78 -1.59 0.65 -1.67 0.52 -1.75 0.37 -1.81 0.22 -1.84 0.09 -1.99 -0.09
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--1.06 -1.45 -0.91 -1.59 -0.76 -1.78 -0.58 -1.91 -0.46 -2.08 -0.26 -2.26 -0.09 -2.41 f*
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--2.06 -0.2 -2.06 0.2 -1.95 0.5 -1.87 0.83 -1.78 1.11 -1.65 1.39 -1.54 1.61 -1.41 1.82
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-0.97 0.71 0.98 0.91 0.93 1.09 1.71 2.69 1.45 3.36 1.14 4 0.73 4.54 0.26 5.05
--0.26 5.05 -0.73 4.5 -1.14 3.91 -1.45 3.29 -1.71 2.63 -0.93 1.04 -0.98 0.87 -0.97 0.7
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--0.93 -1.04 -1.71 -2.63 -1.45 -3.29 -1.13 -3.91 -0.74 -4.5 -0.26 -5.05 -7.48 0 0.09 2.67
-0.26 2.65 0.41 2.62 0.59 2.59 0.74 2.5 0.87 2.41 1.04 2.28 1.15 2.15 1.3 2
-1.41 1.78 1.54 1.58 1.65 1.35 1.78 1.08 1.87 0.8 1.95 0.5 2.06 0.17 f*
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--2.06 -0.2 -2.07 0.2 -1.97 0.5 -1.87 0.83 -1.75 1.11 -1.65 1.39 -1.54 1.61 -1.43 1.82
--1.28 2.02 -1.17 2.19 -1.02 2.32 -0.89 2.45 -0.71 2.54 -0.59 2.61 -0.43 2.65 -0.24 2.67
--0.09 2.65 7.49 0 0.26 -5.05 0.71 -4.54 1.15 -4 1.45 -3.36 1.71 -2.69 0.93 -1.09
-0.96 -0.91 1 -0.71 0.99 -0.52 1.02 -0.31 1.02 -0.11 1.02 0.11 1.02 0.31 0.99 0.52
-1 0.71 0.96 0.91 0.93 1.09 1.71 2.69 1.45 3.36 1.15 4 0.71 4.54 0.26 5.05
--0.26 5.05 -0.71 4.5 -1.15 3.91 -1.45 3.29 -1.71 2.63 -0.93 1.04 -0.96 0.87 -1 0.7
--0.99 0.5 -1.02 0.3 -1.02 0.09 -1.02 -0.09 -1.02 -0.3 -0.99 -0.5 -1 -0.7 -0.96 -0.87
--0.93 -1.04 -1.71 -2.63 -1.45 -3.29 -1.15 -3.91 -0.71 -4.5 -0.26 -5.05 -7.49 0 0.09 2.67
-0.24 2.65 0.43 2.62 0.59 2.59 0.71 2.5 0.89 2.41 1.02 2.28 1.17 2.15 1.28 2
-1.43 1.78 1.54 1.58 1.65 1.35 1.75 1.08 1.87 0.8 1.97 0.5 2.07 0.17 f*
-2871.7 2340.52 2.06 -0.17 1.96 -0.5 1.86 -0.8 1.78 -1.08 1.65 -1.35 1.54 -1.58 1.41 -1.78
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-0.98 -0.91 0.97 -0.71 1.02 -0.52 1.02 -0.31 1.02 -0.11 1 0.11 1.02 0.31 1.02 0.52
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--0.26 5.05 -0.74 4.5 -1.13 3.91 -1.45 3.29 -1.71 2.63 -0.93 1.04 -0.96 0.87 -1 0.7
--1.02 0.5 -1.02 0.3 -1 0.09 -1.02 -0.09 -1.02 -0.3 -1.02 -0.5 -0.97 -0.7 -0.98 -0.87
--0.93 -1.04 -1.71 -2.63 -1.45 -3.29 -1.13 -3.91 -0.73 -4.5 -0.26 -5.05 -7.49 0 0.09 2.67
-0.26 2.65 0.41 2.62 0.58 2.59 0.74 2.5 0.89 2.41 1.02 2.28 1.15 2.15 1.3 2
-1.41 1.78 1.54 1.58 1.67 1.35 1.76 1.08 1.87 0.8 1.97 0.5 2.06 0.17 f*
-352.906 2463.58 19.1367 5.83984 re
-f*
-404.08 2501.02 4.99 0 0 -36.59 8.72 0 0 -6.67 ^ 0 -13.3 -7.07 0
-^ -23.72 0 0 6.67 ^ 0 24.54 -17.47 -24.54 -6.25 0 0 0.82
-25.8 35.77 f*
-427.367 2444.46 8.3125 8.3125 re
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-8.32 0 f*
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--8.31 0 0 52.52 f*
-996.199 3492.14 8.3125 72.7891 re
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-8.32 0 f*
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--8.31 0 0 52.52 f*
-996.199 3492.14 8.3125 72.7891 re
-f*
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-Y*
-222 176 255 rG
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-1773.61 1464.8 24.42 -1.59 11.52 -0.76 S
-1827.52 1461.29 18.45 -1.2 17.5 -1.13 S
-1881.42 1457.79 12.48 -0.82 23.48 -1.52 S
-1935.35 1454.28 6.49 -0.44 29.45 -1.91 S
-1989.25 1450.76 0.52 -0.05 35.42 -2.3 S
-2043.17 1447.25 35.93 -2.35 S
-2097.07 1443.73 35.93 -2.34 S
-2150.98 1440.23 30.56 -2 5.38 -0.35 S
-2204.88 1436.71 24.59 -1.61 11.37 -0.73 S
-2258.81 1433.21 18.6 -1.22 17.34 -1.13 S
-2312.71 1429.69 12.63 -0.83 23.31 -1.52 S
-2366.62 1426.17 6.66 -0.43 29.28 -1.91 S
-2420.53 1422.66 0.7 -0.05 35.24 -2.28 S
-2474.43 1419.16 35.94 -2.34 S
-2528.34 1415.64 35.93 -2.34 S
-2582.27 1412.13 30.7 -2 5.23 -0.34 S
-2636.18 1408.62 24.74 -1.61 11.19 -0.74 S
-2690.08 1405.1 18.77 -1.22 17.17 -1.13 S
-2743.99 1401.61 12.8 -0.84 23.14 -1.5 S
-2797.89 1398.09 6.84 -0.46 29.1 -1.89 S
-2851.8 1394.57 0.87 -0.06 35.07 -2.28 S
-2905.71 1391.06 35.96 -2.35 S
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-3013.54 1384.03 30.88 -1.99 S
-128 0 255 rG
-695.42 1379.34 35.94 2.32 S
-749.33 1382.83 35.94 2.32 S
-803.23 1386.33 35.96 2.32 S
-857.16 1389.8 30.01 1.95 5.93 0.39 S
-911.07 1393.29 24.04 1.56 11.89 0.79 S
-964.97 1396.79 18.08 1.17 17.86 1.17 S
-1018.88 1400.29 12.11 0.78 23.83 1.54 S
-1072.8 1403.78 6.13 0.39 29.82 1.93 S
-1126.71 1407.27 0.15 0 35.78 2.32 S
-1180.62 1410.77 35.93 2.32 S
-1234.53 1414.25 35.94 2.32 S
-1288.43 1417.75 30.19 1.96 5.77 0.37 S
-1342.36 1421.25 24.2 1.56 11.75 0.76 S
-1396.27 1424.74 18.23 1.17 17.71 1.15 S
-1450.17 1428.21 12.26 0.8 23.68 1.54 S
-1504.08 1431.71 6.29 0.41 29.64 1.93 S
-1557.99 1435.2 0.32 0.02 35.63 2.32 S
-1611.92 1438.7 35.93 2.32 S
-1665.82 1442.19 35.93 2.32 S
-1719.73 1445.68 30.36 1.97 5.58 0.35 S
-1773.63 1449.18 24.39 1.59 11.54 0.74 S
-1827.56 1452.67 18.4 1.19 17.54 1.13 S
-1881.46 1456.16 12.43 0.8 23.51 1.52 S
-1935.37 1459.66 6.47 0.41 29.47 1.91 S
-1989.28 1463.15 0.5 0.02 35.44 2.3 S
-2043.18 1466.62 35.96 2.34 S
-2097.11 1470.12 35.94 2.34 S
-2151.02 1473.61 30.51 1.97 5.42 0.38 S
-2204.93 1477.11 24.54 1.58 11.39 0.74 S
-2258.83 1480.6 18.58 1.19 17.36 1.13 S
-2312.76 1484.09 12.58 0.82 23.36 1.5 S
-2366.67 1487.59 6.62 0.43 29.32 1.89 S
-2420.57 1491.08 0.65 0.04 35.29 2.28 S
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-2636.22 1505.04 24.7 1.61 11.24 0.74 S
-2690.13 1508.53 18.73 1.22 17.21 1.13 S
-2744.04 1512.02 12.76 0.82 23.18 1.52 S
-2797.94 1515.52 6.8 0.43 29.16 1.89 S
-2851.87 1519.01 0.8 0.04 35.14 2.28 S
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-11.1111 w
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-1766.21 750.8 10.39 0 21.31 -35.36 20.79 35.36 10.41 0 -26.52 -44.7 0 -28.09 -9.36 0
-^ -27.04 44.7 f*
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-1.54 0.09 0 9.35 f*
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-0 -8.31 -52.49 0 f*
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--0.72 2.28 -0.43 2.35 -0.15 2.4 f*
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-52.49 -15.08 0 -9.36 -39.5 -10.92 39.5 -9.87 0 -9.38 -52.49 -15.06 f*
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-1.16 1.13 1.29 1 1.39 0.89 1.5 0.74 1.61 0.59 1.71 0.45 1.8 0.26 0 9.37 f*
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--0.72 2.28 -0.43 2.34 -0.15 2.41 f*
-217.23 1310 0 9.88 41.58 14.04 -41.58 14.04 0 9.87 52.49 -18.7 0 -10.39 -52.49 -18.73 f*
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--0.2 2.26 -0.57 2.13 -0.91 1.95 -1.26 1.78 -1.56 1.63 -1.87 1.43 -2.15 1.26 -2.41 1.08
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-217.23 1421.27 0 7.27 9.87 0 -4.23 3.17 -3.1 2.89 -2.09 2.6 -0.71 1.2 -0.52 1.13
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--62.37 22.87 0 9.36 32.75 -11.95 0 23.39 -32.75 -11.43 0 -9.36 -10.39 3.65 f*
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-0 -8.31 -52.49 0 f*
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--0.72 2.29 -0.43 2.34 -0.15 2.43 f*
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-0 -8.31 -52.49 0 f*
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-f*
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--53.02 -17.68 f*
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--5.21 3.41 f*
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--1.41 0.87 -1.32 1 -1.21 1.11 -1.13 1.23 -0.98 1.33 -0.87 1.41 -0.74 1.49 -0.59 1.56
--0.41 1.65 -0.28 1.68 -0.09 1.74 f*
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--1.41 0.87 -1.32 1 -1.21 1.11 -1.13 1.23 -0.98 1.33 -0.87 1.41 -0.74 1.5 -0.58 1.56
--0.44 1.63 -0.25 1.7 -0.09 1.73 f*
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--5.86 -1.86 -5.9 -2.35 -6.01 -2.78 -6.14 -3.28 f*
-819.18 880.92 4.58 0 0 -56.55 -7.07 0 0 40.34 -12.48 0 0 5 5.04 0.58
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-0.52 1.67 0.43 1.88 f*
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--1.89 0.52 -1.75 0.7 -1.59 0.84 -1.48 0.98 -1.3 1.13 -1.17 1.22 -1.02 1.34 -0.87 1.43
--0.72 1.52 -0.59 1.61 -0.43 1.65 -0.28 1.71 -0.15 1.76 0 1.78 7.08 0 0.21 -2.21
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--1.99 1.3 -1.11 0.48 -1.17 0.35 -1.21 0.21 -1.3 0.09 -1.3 -0.09 -1.24 -0.21 -1.17 -0.35
--1.08 -0.48 -2 -1.3 -1.7 -1.62 -1.34 -1.91 -1 -2.11 -0.61 -2.21 -0.21 -2.2 -7.08 0
-0.02 1.85 0.2 1.82 0.37 1.76 0.54 1.69 0.7 1.65 0.85 1.54 1.02 1.43 1.15 1.35
-1.31 1.23 1.43 1.11 1.57 0.95 1.69 0.8 1.8 0.65 1.93 0.48 2.02 0.28 2.14 0.11 f*
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--0.98 -1.13 -0.87 -1.28 -0.76 -1.46 -0.68 -1.58 -1.04 -3.63 -0.63 -4.2 -0.21 -4.73 1.69 1.82
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-1.15 0.09 1.13 0.2 2.17 0.8 1.97 1.21 1.74 1.61 1.43 1.89 1.11 2.11 0.7 2.25
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--2.32 -0.11 -2.56 0.15 -2.32 0.41 -2.14 0.69 -1.93 0.93 -1.75 1.17 -1.57 1.41 -1.39 1.63
--1.21 1.8 -1.04 2.02 -0.89 2.17 -0.74 2.32 -0.59 2.47 -0.44 2.61 -0.32 2.73 -0.24 5.75
-0.09 3.43 0.26 3.25 0.44 3.05 0.58 2.91 0.76 2.69 0.93 2.49 1.06 2.29 1.24 2.08
-1.37 1.87 1.54 1.63 1.67 1.39 1.82 1.17 1.96 0.91 2.08 0.65 2.23 0.41 2.34 0.13
-1.7 -0.06 1.61 -0.24 1.52 -0.37 1.46 -0.48 1.39 -0.63 1.28 -0.74 2.3 -1.8 1.89 -2.15
-1.5 -2.47 1.04 -2.71 0.57 -2.91 f*
-951.43 880.92 2.06 -0.17 1.97 -0.5 1.87 -0.8 1.76 -1.09 1.65 -1.34 1.54 -1.58 1.43 -1.78
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--2.06 -0.17 -2.06 0.17 -1.98 0.52 -1.87 0.82 -1.75 1.11 -1.65 1.37 -1.54 1.63 -1.43 1.83
--1.28 2.02 -1.17 2.19 -1.02 2.32 -0.89 2.43 -0.72 2.54 -0.59 2.61 -0.43 2.64 -0.24 2.67
--0.09 2.66 7.48 0 0.26 -5.07 0.71 -4.54 1.15 -3.97 1.45 -3.37 1.71 -2.71 0.93 -1.08
-0.96 -0.91 1 -0.7 1 -0.52 1.02 -0.33 1.02 -0.11 1.02 0.11 1.02 0.33 1 0.52
-0.99 0.7 0.96 0.91 0.93 1.08 1.71 2.71 1.46 3.37 1.15 3.97 0.71 4.54 0.26 5.07
--0.26 5.04 -0.71 4.5 -1.15 3.9 -1.46 3.3 -1.71 2.63 -0.93 1.04 -0.96 0.89 -0.99 0.68
--1 0.5 -1.02 0.3 -1.02 0.11 -1.02 -0.11 -1.02 -0.3 -1 -0.5 -1 -0.68 -0.96 -0.89
--0.93 -1.04 -1.71 -2.62 -1.45 -3.3 -1.15 -3.9 -0.71 -4.5 -0.26 -5.04 -7.48 0 0.09 2.65
-0.24 2.64 0.43 2.63 0.59 2.58 0.72 2.49 0.89 2.41 1.02 2.3 1.17 2.14 1.28 1.98
-1.43 1.78 1.54 1.58 1.65 1.34 1.75 1.09 1.87 0.8 1.98 0.5 2.06 0.17 f*
-1298.57 880.92 4.58 0 0 -56.55 -7.07 0 0 40.34 -12.48 0 0 5 5.04 0.58
-2.25 0.48 2.06 0.8 0.95 0.56 0.88 0.72 0.82 0.85 0.76 1.02 0.67 1.24 0.58 1.41
-0.52 1.67 0.43 1.88 f*
-1341.82 880.92 2.06 -0.08 1.98 -0.29 1.87 -0.45 1.75 -0.65 1.67 -0.87 1.54 -1.09 1.43 -1.28
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--1.89 -0.06 -2.86 0.21 -2.71 0.65 -2.48 1.13 -2.23 1.58 -1.95 2.08 -1.67 2.59 -1.33 3.11
--0.97 3.62 7.07 0 0.67 -2.06 0.83 -1.75 0.93 -1.5 1.11 -1.24 1.23 -0.96 1.41 -0.67
-1.61 -0.41 1.78 -0.15 1.59 0.11 1.47 0.33 1.37 0.55 1.25 0.71 1.17 0.89 1.05 1.06
-0.95 1.24 0.87 1.37 0.74 1.5 0.65 1.65 0.97 3.61 0.61 3.97 0.2 4.25 -1.97 -1.95
--1.87 -1.48 -1.74 -1.11 -1.65 -0.79 -1.56 -0.48 -1.46 -0.3 -2.64 -0.15 -2.19 0.17 -2.04 0.38
--1.91 0.52 -1.73 0.7 -1.61 0.84 -1.46 0.98 -1.32 1.13 -1.15 1.22 -1.02 1.34 -0.89 1.43
--0.72 1.52 -0.59 1.61 -0.43 1.65 -0.28 1.71 -0.16 1.76 0.02 1.78 7.06 0 0.21 -2.21
-0.61 -2.19 1 -2.11 1.37 -1.91 1.67 -1.65 2 -1.28 1.11 -0.48 1.15 -0.37 1.24 -0.22
-1.3 -0.07 1.3 0.07 1.23 0.22 1.17 0.37 1.09 0.48 1.99 1.28 1.7 1.65 1.34 1.91
-1 2.11 0.61 2.19 0.22 2.21 -0.22 2.2 -0.61 2.21 -1 2.11 -1.34 1.91 -1.7 1.63
--1.99 1.3 -1.09 0.48 -1.17 0.35 -1.23 0.21 -1.3 0.09 -1.3 -0.09 -1.24 -0.21 -1.15 -0.35
--1.11 -0.48 -2 -1.3 -1.67 -1.62 -1.37 -1.91 -1 -2.11 -0.61 -2.21 -0.21 -2.2 -7.06 0
-0 1.85 0.2 1.82 0.38 1.76 0.54 1.69 0.7 1.65 0.88 1.54 0.99 1.43 1.15 1.35
-1.3 1.23 1.43 1.11 1.56 0.95 1.69 0.8 1.83 0.65 1.9 0.48 2.05 0.28 2.12 0.11 f*
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--1.8 -5.6 -1.52 -6.05 -1.41 -6.84 -7.49 0 2.13 7.84 2.04 6.61 2.15 5.8 2.36 5.32
-2.75 5.25 3.25 5.56 8.62 13.52 -30.79 0 0 6.66 f*
-1430.82 880.92 2.06 -0.17 1.97 -0.5 1.86 -0.8 1.76 -1.09 1.67 -1.34 1.54 -1.58 1.41 -1.78
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--2.06 -0.17 -2.06 0.17 -1.95 0.52 -1.87 0.82 -1.78 1.11 -1.65 1.37 -1.54 1.63 -1.41 1.83
--1.3 2.02 -1.15 2.19 -1.04 2.32 -0.87 2.43 -0.74 2.54 -0.59 2.61 -0.41 2.64 -0.26 2.67
--0.09 2.66 7.48 0 0.26 -5.07 0.74 -4.54 1.13 -3.97 1.46 -3.37 1.71 -2.71 0.93 -1.08
-0.95 -0.91 1 -0.7 1.02 -0.52 0.99 -0.33 1.02 -0.11 1.02 0.11 1.02 0.33 1.02 0.52
-0.97 0.7 0.98 0.91 0.93 1.08 1.7 2.71 1.48 3.37 1.13 3.97 0.73 4.54 0.26 5.07
--0.26 5.04 -0.73 4.5 -1.13 3.9 -1.48 3.3 -1.7 2.63 -0.93 1.04 -0.98 0.89 -0.97 0.68
--1.02 0.5 -1.02 0.3 -1.02 0.11 -1.02 -0.11 -0.99 -0.3 -1.02 -0.5 -1 -0.68 -0.95 -0.89
--0.93 -1.04 -1.71 -2.62 -1.46 -3.3 -1.13 -3.9 -0.74 -4.5 -0.26 -5.04 -7.48 0 0.09 2.65
-0.26 2.64 0.41 2.63 0.59 2.58 0.74 2.49 0.87 2.41 1.04 2.3 1.15 2.14 1.3 1.98
-1.41 1.78 1.54 1.58 1.65 1.34 1.78 1.09 1.87 0.8 1.95 0.5 2.06 0.17 f*
-1777.95 880.92 4.58 0 0 -56.55 -7.07 0 0 40.34 -12.48 0 0 5 5.04 0.58
-2.25 0.48 2.07 0.8 0.95 0.56 0.89 0.72 0.8 0.85 0.76 1.02 0.67 1.24 0.59 1.41
-0.52 1.67 0.43 1.88 f*
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-1.3 -1.52 1.17 -1.76 1.07 -1.99 0.91 -2.26 0.79 -2.5 0.63 -2.75 0.48 -3.04 0.32 -3.32
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--1.86 -0.06 -2.89 0.21 -2.69 0.65 -2.5 1.13 -2.23 1.58 -1.96 2.08 -1.67 2.59 -1.33 3.11
--0.97 3.62 7.07 0 0.7 -2.06 0.8 -1.75 0.95 -1.5 1.09 -1.24 1.23 -0.96 1.43 -0.67
-1.58 -0.41 1.78 -0.15 1.59 0.11 1.48 0.33 1.37 0.55 1.25 0.71 1.17 0.89 1.07 1.06
-0.95 1.24 0.85 1.37 0.74 1.5 0.65 1.65 1 3.61 0.59 3.97 0.2 4.25 -1.97 -1.95
--1.84 -1.48 -1.76 -1.11 -1.65 -0.79 -1.56 -0.48 -1.46 -0.3 -2.64 -0.15 -2.19 0.17 -2.04 0.38
--1.89 0.52 -1.75 0.7 -1.61 0.84 -1.46 0.98 -1.32 1.13 -1.15 1.22 -1.02 1.34 -0.87 1.43
--0.74 1.52 -0.59 1.61 -0.44 1.65 -0.28 1.71 -0.13 1.76 0 1.78 7.07 0 0.2 -2.21
-0.63 -2.19 1 -2.11 1.34 -1.91 1.67 -1.65 2 -1.28 1.11 -0.48 1.17 -0.37 1.24 -0.22
-1.28 -0.07 1.3 0.07 1.23 0.22 1.17 0.37 1.11 0.48 1.97 1.28 1.69 1.65 1.35 1.91
-1 2.11 0.61 2.19 0.21 2.21 -0.21 2.2 -0.61 2.21 -1 2.11 -1.35 1.91 -1.69 1.63
--1.97 1.3 -1.11 0.48 -1.17 0.35 -1.23 0.21 -1.3 0.09 -1.28 -0.09 -1.24 -0.21 -1.17 -0.35
--1.11 -0.48 -2 -1.3 -1.67 -1.62 -1.34 -1.91 -1 -2.11 -0.63 -2.21 -0.2 -2.2 -7.07 0
-0.02 1.85 0.17 1.82 0.38 1.76 0.54 1.69 0.69 1.65 0.88 1.54 0.99 1.43 1.17 1.35
-1.31 1.23 1.43 1.11 1.57 0.95 1.67 0.8 1.82 0.65 1.91 0.48 2.04 0.28 2.12 0.11 f*
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--1.61 -1.05 -1.76 -0.89 -1.91 -0.74 -2.05 -0.54 -2.19 -0.35 -2.34 -0.11 -2.34 0.11 -2.17 0.35
--2 0.54 -1.87 0.74 -1.7 0.89 -1.52 1.05 -1.39 1.15 -1.21 1.25 -1.08 1.35 -0.91 1.41
--0.78 1.45 -0.63 1.48 -0.84 2.93 -0.29 2.78 7.48 0 0.26 -2.28 0.7 -2.11 1.09 -1.91
-1.45 -1.67 1.74 -1.36 1.97 -1.02 2.15 -0.65 2.3 -0.24 2.3 0.24 2.15 0.65 1.97 1.02
-1.74 1.36 1.46 1.67 1.08 1.91 0.7 2.11 0.26 2.28 -0.26 2.28 -0.7 2.11 -1.08 1.91
--1.46 1.65 -1.74 1.37 -1.97 1.04 -2.15 0.65 -2.3 0.21 -2.3 -0.21 -2.15 -0.65 -1.97 -1.04
--1.74 -1.37 -1.45 -1.65 -1.09 -1.91 -0.7 -2.11 -0.26 -2.28 -7.48 0 0.18 2.28 0.5 2.15
-0.82 2.02 1.11 1.87 1.39 1.72 1.63 1.54 1.86 1.39 2.09 1.17 -2.56 1.79 -1.26 1.08
--1.17 1.3 -1 1.52 -0.78 1.8 -0.52 2.13 -0.2 2.45 7.07 0 0.22 -1.93 0.59 -1.71
-0.93 -1.5 1.23 -1.23 1.48 -1.02 1.69 -0.72 1.87 -0.45 1.97 -0.15 1.98 0.15 1.87 0.45
-1.69 0.72 1.48 1.02 1.23 1.23 0.93 1.5 0.59 1.71 0.22 1.93 -0.22 1.93 -0.59 1.71
--0.93 1.5 -1.23 1.26 -1.48 1 -1.69 0.74 -1.87 0.45 -1.98 0.15 -1.97 -0.15 -1.87 -0.45
--1.69 -0.74 -1.48 -1 -1.23 -1.26 -0.93 -1.5 -0.59 -1.71 -0.22 -1.93 -7.07 0 0.08 1.76
-0.26 1.62 0.42 1.57 0.56 1.43 0.72 1.35 0.84 1.21 0.96 1.13 1.11 0.99 1.19 0.91
-1.33 0.78 1.39 0.67 1.49 0.55 3.23 0.75 3.47 0.24 f*
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--2.04 -0.17 -2.06 0.17 -1.98 0.52 -1.87 0.82 -1.78 1.11 -1.65 1.37 -1.54 1.63 -1.41 1.83
--1.3 2.02 -1.15 2.19 -1.02 2.32 -0.89 2.43 -0.74 2.54 -0.59 2.61 -0.41 2.64 -0.26 2.67
--0.08 2.66 7.48 0 0.26 -5.07 0.74 -4.54 1.13 -3.97 1.46 -3.37 1.71 -2.71 0.93 -1.08
-0.97 -0.91 0.98 -0.7 1.02 -0.52 1.02 -0.33 1.02 -0.11 1 0.11 1.02 0.33 1.02 0.52
-0.97 0.7 0.98 0.91 0.93 1.08 1.71 2.71 1.46 3.37 1.13 3.97 0.73 4.54 0.26 5.07
--0.26 5.04 -0.73 4.5 -1.13 3.9 -1.46 3.3 -1.71 2.63 -0.93 1.04 -0.98 0.89 -0.97 0.68
--1.02 0.5 -1.02 0.3 -1 0.11 -1.02 -0.11 -1.02 -0.3 -1.02 -0.5 -0.98 -0.68 -0.97 -0.89
--0.93 -1.04 -1.71 -2.62 -1.46 -3.3 -1.13 -3.9 -0.74 -4.5 -0.26 -5.04 -7.48 0 0.08 2.65
-0.26 2.64 0.41 2.63 0.59 2.58 0.74 2.49 0.89 2.41 1.02 2.3 1.15 2.14 1.3 1.98
-1.41 1.78 1.54 1.58 1.65 1.34 1.78 1.09 1.87 0.8 1.98 0.5 2.06 0.17 f*
-2257.33 880.92 4.59 0 0 -56.55 -7.08 0 0 40.34 -12.46 0 0 5 5.01 0.58
-2.28 0.48 2.06 0.8 0.93 0.56 0.89 0.72 0.82 0.85 0.74 1.02 0.67 1.24 0.61 1.41
-0.5 1.67 0.43 1.88 f*
-2300.61 880.92 2.06 -0.08 1.95 -0.29 1.87 -0.45 1.78 -0.65 1.65 -0.87 1.56 -1.09 1.43 -1.28
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--1.87 -0.06 -2.89 0.21 -2.69 0.65 -2.48 1.13 -2.23 1.58 -1.97 2.08 -1.68 2.59 -1.32 3.11
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-0.02 1.85 0.2 1.82 0.37 1.76 0.52 1.69 0.71 1.65 0.85 1.54 1.02 1.43 1.15 1.35
-1.31 1.23 1.43 1.11 1.56 0.95 1.7 0.8 1.8 0.65 1.93 0.48 2.02 0.28 2.14 0.11 f*
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--1.11 -0.48 -2 -1.3 -1.67 -1.62 -1.37 -1.91 -0.98 -2.11 -0.63 -2.21 -0.2 -2.2 -7.07 0
-0 1.85 0.19 1.82 0.38 1.76 0.54 1.69 0.69 1.65 0.87 1.54 1 1.43 1.17 1.35
-1.29 1.23 1.43 1.11 1.59 0.95 1.67 0.8 1.82 0.65 1.91 0.48 2.04 0.28 2.13 0.11 f*
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--0.26 5.04 -0.74 4.5 -1.13 3.9 -1.45 3.3 -1.72 2.63 -0.93 1.04 -0.95 0.89 -1 0.68
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-0.26 2.64 0.43 2.63 0.57 2.58 0.74 2.49 0.89 2.41 1.02 2.3 1.17 2.14 1.28 1.98
-1.43 1.78 1.52 1.58 1.67 1.34 1.75 1.09 1.87 0.8 1.98 0.5 2.06 0.17 f*
-2720.31 861.37 7.05 0 0.2 2.84 0.52 2.58 0.89 2.26 1.25 1.95 1.63 1.56 2.02 1.16
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--1.41 0.91 -1.52 0.78 -1.59 0.63 -1.67 0.52 -1.75 0.37 -1.81 0.24 -1.84 0.06 -1.99 -0.06
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--1.06 -1.43 -0.91 -1.61 -0.76 -1.76 -0.58 -1.93 -0.46 -2.08 -0.26 -2.24 -0.09 -2.43 f*
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--0.93 -1.04 -1.71 -2.62 -1.45 -3.3 -1.13 -3.9 -0.74 -4.5 -0.26 -5.04 -7.48 0 0.09 2.65
-0.26 2.64 0.41 2.63 0.59 2.58 0.74 2.49 0.87 2.41 1.04 2.3 1.15 2.14 1.3 1.98
-1.41 1.78 1.54 1.58 1.65 1.34 1.78 1.09 1.87 0.8 1.95 0.5 2.06 0.17 f*
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-1 0.7 0.96 0.91 0.93 1.08 1.71 2.71 1.45 3.37 1.15 3.97 0.71 4.54 0.26 5.07
--0.26 5.04 -0.71 4.5 -1.15 3.9 -1.45 3.3 -1.71 2.63 -0.93 1.04 -0.96 0.89 -1 0.68
--0.99 0.5 -1.02 0.3 -1.02 0.11 -1.02 -0.11 -1.02 -0.3 -0.99 -0.5 -1 -0.68 -0.96 -0.89
--0.93 -1.04 -1.71 -2.62 -1.45 -3.3 -1.15 -3.9 -0.71 -4.5 -0.26 -5.04 -7.49 0 0.09 2.65
-0.24 2.64 0.43 2.63 0.59 2.58 0.71 2.49 0.89 2.41 1.02 2.3 1.17 2.14 1.28 1.98
-1.43 1.78 1.54 1.58 1.65 1.34 1.75 1.09 1.87 0.8 1.97 0.5 2.07 0.17 f*
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-1 0.7 0.96 0.91 0.93 1.08 1.71 2.71 1.45 3.37 1.13 3.97 0.74 4.54 0.26 5.07
--0.26 5.04 -0.74 4.5 -1.13 3.9 -1.45 3.3 -1.71 2.63 -0.93 1.04 -0.96 0.89 -1 0.68
--1.02 0.5 -1.02 0.3 -1 0.11 -1.02 -0.11 -1.02 -0.3 -1.02 -0.5 -0.97 -0.68 -0.98 -0.89
--0.93 -1.04 -1.71 -2.62 -1.45 -3.3 -1.13 -3.9 -0.73 -4.5 -0.26 -5.04 -7.49 0 0.09 2.65
-0.26 2.64 0.41 2.63 0.58 2.58 0.74 2.49 0.89 2.41 1.02 2.3 1.15 2.14 1.3 1.98
-1.41 1.78 1.54 1.58 1.67 1.34 1.76 1.09 1.87 0.8 1.97 0.5 2.06 0.17 f*
-352.906 1071.66 19.1367 5.83984 re
-f*
-415.71 1094.54 -7.07 0 -0.46 1.9 -0.74 1.67 -0.96 1.43 -1.17 1.17 -1.32 0.93 -1.43 0.67
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--0.95 -1.13 -0.87 -1.28 -0.76 -1.46 -0.67 -1.58 -1.04 -3.62 -0.65 -4.21 -0.2 -4.73 1.7 1.82
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--2.34 -0.11 -2.54 0.13 -2.35 0.44 -2.12 0.69 -1.93 0.93 -1.76 1.17 -1.56 1.41 -1.39 1.63
--1.21 1.8 -1.05 2.02 -0.89 2.16 -0.74 2.32 -0.59 2.48 -0.45 2.61 -0.31 2.73 -0.24 5.75
-0.09 3.43 0.26 3.26 0.41 3.06 0.61 2.88 0.76 2.72 0.91 2.49 1.09 2.28 1.21 2.08
-1.39 1.87 1.54 1.63 1.67 1.39 1.8 1.17 1.98 0.91 2.08 0.65 2.21 0.41 2.37 0.13
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-1.5 -2.48 1.02 -2.71 0.56 -2.9 f*
-427.367 1052.54 8.3125 8.3125 re
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-0.97 0.71 0.98 0.91 0.93 1.08 1.71 2.71 1.46 3.36 1.13 3.97 0.73 4.53 0.26 5.06
--0.26 5.05 -0.73 4.49 -1.12 3.91 -1.46 3.3 -1.71 2.63 -0.93 1.04 -0.98 0.87 -0.97 0.7
--1.02 0.49 -1.02 0.3 -1.02 0.11 -1 -0.11 -1.02 -0.3 -1.02 -0.49 -0.98 -0.7 -0.97 -0.87
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-1.41 1.78 1.54 1.59 1.65 1.35 1.78 1.08 1.87 0.8 1.98 0.5 2.04 0.18 f*
-352.906 1259.48 19.1367 5.81641 re
-f*
-386.61 1278.6 -7.07 0 0.15 2.21 0.29 2.04 0.43 1.93 0.58 1.78 0.7 1.63 0.84 1.5
-0.96 1.37 1.09 1.21 1.21 1.09 1.32 0.93 1.45 0.8 1.57 0.65 1.66 0.5 1.76 0.37
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--2.13 0.24 -1.95 0.44 -1.8 0.56 -1.65 0.72 -1.49 0.87 -1.34 1 -1.2 1.13 -1.07 1.26
--0.91 1.34 -0.78 1.47 -0.64 1.59 -0.48 1.67 -0.34 1.76 -0.2 1.85 -0.07 1.91 7.05 0
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--9.98 -29.19 -4.73 0 -9.74 29.19 0 -29.19 -4.23 0 0 34.95 f*
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-f*
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-f*
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--0.21 -2.15 -0.09 -2.21 -8.31 0 0 47.83 f*
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--1.87 5.86 -2.32 5.9 -2.8 6.01 -3.28 6.14 f*
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-0 8.31 f*
-778.383 2094.95 8.3125 10.3945 re
-f*
-778.383 2032.57 8.3125 52.4961 re
-f*
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-8.31 0 f*
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--0.55 1.41 -0.19 1.63 0 41.08 -7.27 0 0 6.75 ^ 0 14.04 f*
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--0.11 -2.34 0 -39 -10.76 0 0 67.93 f*
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-1.58 3.06 1.78 2.84 2.02 2.65 2.21 2.39 2.39 2.14 2.54 1.87 2.71 1.58 2.82 1.26
-2.95 0.91 3.04 0.57 3.13 0.2 f*
-1021.57 3694.1 12.11 0 13.45 -51.79 13.46 51.79 12.11 0 13.46 -51.79 13.45 51.79 12.09 0
--19.48 -67.93 -12.11 0 -14.13 51.11 -12.79 -51.11 -12.11 0 -19.51 67.93 f*
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-29.6 80.71 12.11 0 -15.47 -42.38 30.25 0 -14.78 42.38 -12.11 0 4.71 13.45 f*
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--0.11 -2.34 0 -39 -10.77 0 0 67.93 f*
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--0.97 1.39 -0.81 1.45 -0.65 1.47 -0.46 1.52 -0.28 1.52 -0.09 1.52 0 54.47 f*
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--1.2 -2.04 -0.67 -2.08 -0.24 -2.08 -10.76 0 f*
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-f*
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-0 10.76 f*
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--0.11 -2.34 0 -39 -10.77 0 0 67.93 f*
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--1.55 1.63 -1.99 1.43 -2.39 1.22 -2.78 1.06 -3.19 0.92 -8.53 1.8 -1.8 0.7 -1.39 0.71
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-1.19 -0.87 0.93 -1.06 0.68 -1.22 0.45 -1.37 0.24 -1.47 7.64 0 -7.64 0 f*
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--1.71 -0.58 -1.71 -0.96 -1.65 -1.28 -1.43 -1.59 -1.17 -1.84 -0.76 -2.06 -0.28 -2.28 0 -29.69
--7.18 0 0 45.45 f*
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-2.45 0.52 2.23 0.87 1.98 1.37 1.69 2.04 1.37 2.87 1.02 3.84 f*
-1719.33 1196.98 20.6641 6.31641 re
-f*
-1769.21 1237.48 4.95 0 0 -61.18 -7.64 0 0 43.64 -13.5 0 0 5.4 5.45 0.63
-2.46 0.52 2.21 0.87 1.98 1.37 1.69 2.04 1.39 2.87 1.02 3.84 f*
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--1.63 1.17 -1.75 0.97 -1.87 0.83 -2 0.67 -4.34 0.87 -4.82 0.26 -3.28 -0.15 -3.1 -0.48
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--0.69 2.23 -0.91 4.86 -0.3 5.23 0.11 2.95 0.31 2.8 0.49 2.63 0.7 2.47 0.85 2.28
-1.02 2.11 1.17 1.93 1.33 1.73 1.45 1.54 1.58 1.37 1.7 1.15 1.82 0.96 1.91 0.76
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-1.63 -2.32 1.15 -2.67 0.63 -3.04 8.09 0 f*
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--1.62 1.17 -1.76 0.97 -1.87 0.83 -1.99 0.67 -4.34 0.87 -4.82 0.26 -3.28 -0.15 -3.1 -0.48
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--0.7 2.23 -0.91 4.86 -0.3 5.23 0.11 2.95 0.3 2.8 0.5 2.63 0.7 2.47 0.84 2.28
-1.02 2.11 1.17 1.93 1.33 1.73 1.45 1.54 1.59 1.37 1.69 1.15 1.82 0.96 1.91 0.76
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-1.63 -2.32 1.15 -2.67 0.63 -3.04 8.09 0 f*
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--1.52 1.28 -1.67 1.13 -1.8 0.98 -3.97 1.5 -4.34 0.89 -4.62 0.29 -5.34 -0.34 -2.39 -0.42
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--1.17 0.84 -0.87 0.91 -0.59 0.98 -0.34 1.11 -0.24 2.87 0.29 2.37 0.82 2.08 1.29 1.78
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-2.23 -1.49 1.74 -1.87 1.23 -2.13 0.76 -2.41 0.24 -2.6 8.09 0 f*
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--17.96 -52.65 -8.53 0 -17.54 52.65 0 -52.65 -7.64 0 0 63 f*
-1631.71 1338.04 5.4 0 0 -39.58 9.42 0 0 -7.21 ^ 0 -14.41 -7.64 0
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-27.85 38.69 f*
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--0.69 2.26 -0.91 4.84 -0.3 5.23 0.11 2.95 0.31 2.8 0.49 2.62 0.7 2.48 0.85 2.28
-1.02 2.11 1.17 1.93 1.33 1.74 1.45 1.54 1.58 1.37 1.7 1.15 1.82 0.95 1.91 0.76
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-1.63 -2.32 1.15 -2.67 0.63 -3.04 8.09 0 f*
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--1.24 2.45 -1.61 2.15 -1.9 1.82 -2.13 1.5 -2.26 1.16 -2.36 0.85 -20.21 5.4 -3.52 1.84
--1.2 0.85 -0.84 0.91 -0.61 0.98 -0.35 1.11 -0.24 2.86 0.28 2.39 0.82 2.06 1.28 1.79
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-2.21 -1.5 1.74 -1.84 1.24 -2.14 0.76 -2.41 0.26 -2.61 8.07 0 f*
-1531.05 1441.3 11.24 0 18.43 -54.88 18.42 54.88 11.22 0 0 -62.98 -7.64 0 0 52.62
--17.97 -52.62 -8.53 0 -17.53 52.62 0 -52.62 -7.64 0 0 62.98 f*
-1621.38 1439.5 4.94 0 0 -61.17 -7.64 0 0 43.64 -13.47 0 0 5.38 5.42 0.65
-2.45 0.52 2.24 0.87 1.97 1.37 1.67 2.04 1.39 2.87 1.02 3.84 f*
-1648.33 1399 20.6836 6.31641 re
-f*
-1730.55 1421.5 -1.28 5.14 -0.85 2.28 -0.98 2.08 -1.11 1.87 -1.23 1.69 -1.37 1.52 -1.49 1.32
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--0.7 2.26 -0.91 4.84 -0.3 5.23 0.11 2.95 0.3 2.8 0.5 2.62 0.67 2.48 0.87 2.28
-1 2.11 1.19 1.93 1.3 1.74 1.48 1.54 1.58 1.37 1.7 1.15 1.82 0.95 1.91 0.76
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-1.63 -2.32 1.15 -2.67 0.63 -3.04 8.07 0 f*
-1759.77 1441.3 10.33 0 22.03 -62.98 -8.98 0 -6.3 18.44 -24.71 0 -6.3 -18.44 -8.98 0
-19.77 53.96 8.09 0 -10.33 -28.34 20.21 0 -9.88 28.34 -8.09 0 3.15 9.01 f*
-1799.76 1441.3 11.22 0 18.42 -54.88 18.42 54.88 11.24 0 0 -62.98 -7.64 0 0 52.62
--17.97 -52.62 -8.55 0 -17.51 52.62 0 -52.62 -7.64 0 0 62.98 f*
-1874.35 1439.5 31.9 0 0 -7.21 -25.61 0 -2.26 -17.54 2.22 1.59 2.62 1.28 3.13 0.87
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-0.97 -2.02 1.22 -1.78 1.41 -1.5 1.61 -1.19 1.84 -0.87 2.04 -0.56 2.26 -0.18 3.03 0.24
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--0.59 2.54 -1 2.43 -1.43 2.19 -1.86 1.91 -2.32 1.48 -2.8 0.95 -3.27 0.35 -1.74 -0.09
--1.54 -0.26 -1.41 -0.45 -1.32 -0.61 -2.65 -1.82 -3.04 -2.62 -6.73 0 4.5 33.29 f*
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--2.23 -2.58 -2.8 -2.2 -1.59 -0.91 -1.71 -0.76 -1.82 -0.58 -1.93 -0.43 -2.06 -0.21 -2.12 -0.02
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-0 -50.33 -13.87 0 0 87.65 f*
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--25.13 -87.65 -15.61 0 -18.21 65.95 -16.45 -65.95 -15.61 0 -25.12 87.65 f*
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-38.13 104.12 15.6 0 -19.92 -54.66 38.98 0 -19.05 54.66 -15.6 0 6.07 17.36 f*
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-2938.39 2725.82 12.13 0 0 -13.02 3.45 4.14 3.3 3.41 3.19 2.71 3.17 2.11 3.19 1.5
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-1.43 2.34 1.68 2.21 1.84 2.04 2.04 1.87 2.21 1.64 2.34 1.46 2.49 1.21 2.63 0.98
-2.73 0.72 2.8 0.43 2.91 0.15 f*
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--3.13 9.76 -3.88 9.86 -4.64 10.03 -5.45 10.26 f*
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--2.93 -0.72 -2.45 -1.13 -1.96 -1.41 -1.48 -1.65 -1.02 -1.78 -0.61 -1.84 -0.2 -1.81 -9.41 0 f*
-833.25 879.14 8.83 0 0 -9.42 2.46 3.02 2.49 2.45 2.5 1.95 2.49 1.5 2.46 1.07
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--0.11 -2.04 0 -34.18 -9.42 0 0 59.5 f*
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--23.52 -68.94 -11.18 0 -22.96 68.94 0 -68.94 -10 0 0 82.49 f*
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-3.66 0.98 2.37 1.15 0.74 0.63 0.5 0.65 0.29 0.65 0.08 0.66 0 5.32 -0.17 1
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--2.93 -0.72 -2.45 -1.13 -1.95 -1.41 -1.48 -1.65 -1.02 -1.78 -0.61 -1.84 -0.19 -1.81 -9.42 0 f*
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--9.42 0 0 59.5 f*
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-25.89 70.7 10.59 0 -13.54 -37.11 26.48 0 -12.93 37.11 -10.59 0 4.1 11.79 f*
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--9.4 0 0 59.5 f*
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--23.55 -68.94 -11.17 0 -22.94 68.94 0 -68.94 -10 0 0 82.49 f*
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-3.61 -0.67 1.76 -0.06 1.71 0.24 1.58 0.56 1.46 1.02 1.23 1.52 1.02 2.13 3.52 10
--19.99 60.09 f*
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-0 -60.09 -8.83 0 0 8.25 -1.8 -2.32 -1.89 -2.06 -2.04 -1.82 -2.22 -1.52 -2.43 -1.23
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--1.56 2.49 -0.95 2.61 -0.33 2.67 0 47.72 f*
-2182.83 879.14 8.81 0 0 -9.42 2.46 3.02 2.49 2.45 2.5 1.95 2.49 1.5 2.46 1.07
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--2.89 -0.32 -2.84 -0.93 -2.67 -1.56 -2.43 -2.11 -2.06 -2.63 -1.61 -3.12 -1.04 -3.58 -0.26 -1.95
--0.11 -2.04 0 -34.18 -9.4 0 0 59.5 f*
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-1.63 2.13 1.43 2.43 1.2 2.73 9.42 0 f*
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--1.56 2.49 -0.96 2.61 -0.32 2.67 0 47.72 f*
-2479.93 819.641 9.41406 82.4883 re
-f*
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-3.61 -0.67 1.76 -0.06 1.71 0.24 1.58 0.56 1.45 1.02 1.24 1.52 1.02 2.13 3.54 10
--20 60.09 f*
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-25.89 70.7 10.59 0 -13.55 -37.11 26.48 0 -12.93 37.11 -10.59 0 4.1 11.79 f*
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--1.56 2.49 -0.98 2.61 -0.33 2.67 0 47.72 f*
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--0.13 -2.89 -9.98 0 0.29 4.62 0.63 4.21 0.93 3.78 1.2 3.38 1.43 3 1.65 2.65
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--0.76 1.28 -0.48 1.46 -0.24 1.71 -0.07 2.02 0.09 1.63 0.29 1.5 0.46 1.41 0.61 1.32
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--1.65 -1.37 -1.76 -1.17 -1.87 -1.02 -4.01 -1.5 -4.3 -0.89 -4.54 -0.29 -3.11 0.26 -2.93 0.5
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-1.63 2.13 1.43 2.43 1.21 2.73 9.42 0 f*
-3033.22 877.97 8.83 0 0 -8.83 2.48 2.99 2.54 2.39 2.54 1.84 2.52 1.39 2.43 0.96
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--2.21 -3.34 -1.74 -3.93 -0.63 -2.15 -0.48 -2.28 -0.28 -2.39 -0.11 -2.49 -9.42 0 0 30.05 f*
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--0.61 1.59 -0.22 1.84 0 46.55 -8.24 0 0 7.66 ^ 0 15.91 f*
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-2.65 1.13 2.78 0.71 2.91 0.24 f*
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-b(75)p eop end
-%%Page: 280 286
-TeXDict begin 280 285 bop 150 -116 a FE(280)2582 b FD(NCO)30
-b FE(4.4.8)j(User)d(Guide)150 299 y FC(Y)150 419 y Ft(Y)-6
-b(oric)n(k)17 b Ff(:)c(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h
-(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)
-g(:)g(:)g(:)g(:)g(:)h(:)44 b Ft(15,)26 b(24)2025 299
-y FC(Z)2025 496 y Fs(zlib)d Ff(:)13 b(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g
-(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)
-g(:)h(:)f(:)g(:)g(:)g(:)g(:)g(:)g(:)h(:)f(:)g(:)g(:)g(:)g(:)49
-b Ft(78)p eop end
-%%Trailer
-
-userdict /end-hook known{end-hook}if
-%%EOF
diff --git a/doc/nco.texi b/doc/nco.texi
index 6260429..4910067 100644
--- a/doc/nco.texi
+++ b/doc/nco.texi
@@ -7,7 +7,7 @@
@ignore
-$Header: /cvsroot/nco/nco/doc/nco.texi,v 1.1088 2015/02/16 23:36:50 zender Exp $
+$Header$
Purpose: TeXInfo documentation for netCDF Operators (NCO)
@@ -56,7 +56,7 @@ cd ~/nco/doc;/usr/bin/scp index.shtml nco_news.shtml ChangeLog TODO README VERSI
cd ~/nco/doc; scp -p index.shtml nco_news.shtml ChangeLog TODO README VERSION nco.dvi nco.html nco.info* nco.pdf nco.ps nco.texi nco.txt nco.xml ../data/ncap.in ../data/ncap2.in dust.ess.uci.edu:/var/www/html/nco;cd -
# 20130806 Copy CMIP5 images (takes additional time)
cd ~/nco/doc/xmp;/usr/bin/scp fgr*.png fgr*.eps zender,nco at web.sf.net:/home/project-web/nco/htdocs/xmp;cd -
-cd ~/nco/doc/xmp;/usr/bin/scp fgr*.png fgr*.eps dust.ess.uci.edu:/var/www/html/nco/xmp;cd -
+cd ~/nco/doc/xmp;/usr/bin/scp fgr*.png fgr*.eps dust.ess.uci.edu:/var/www/html/nco/xmp;cd -
# 20120203 Copy all nco.html PNG images (takes additional time)
cd ~/nco/doc;/usr/bin/scp nco_*.png zender,nco at web.sf.net:/home/project-web/nco/htdocs;cd -
cd ~/nco/doc;scp -p nco_*.png dust.ess.uci.edu:/var/www/html/nco;cd -
@@ -114,12 +114,12 @@ Octave TeXInfo manual shows clean TeXInfo structure
@setfilename nco.info
@c Define edition, date, ...
- at set nco-edition 4.4.8
- at set doc-edition 4.4.8
+ at set nco-edition 4.5.0
+ at set doc-edition 4.5.0
@set copyright-years 1995--2015
@set update-year 2015
- at set update-date 16 February 2015
- at set update-month February 2015
+ at set update-date 21 May 2015
+ at set update-month May 2015
@settitle @acronym{NCO} @value{nco-edition} User Guide
@@ -299,7 +299,7 @@ ncflint, ncks, ncra, ncrcat, ncrename, ncwa">
@subtitle @value{update-month}
@author by Charlie Zender
- at author Department of Earth System Science
+ at author Departments of Earth System Science and of Computer Science
@author University of California, Irvine
@html
<p>WWW readers: Having trouble finding the section you want?</p>
@@ -1507,9 +1507,11 @@ Run the operator with @samp{-r} and then run the command with
It is very important that your report contain the exact error messages
and compile-time environment.
Include a copy of your sample input file, or place one on a
-publically accessible location, of the file(s).
-Post the full bug report to the
- at uref{http://sf.net/bugs/?group_id=3331, NCO Project buglist}.
+publicly accessible location, of the file(s).
+If you are sure it is a bug, post the full report to the
+ at uref{http://sf.net/p/nco/bugs, NCO Project buglist}.
+Otherwise post all the information to
+ at uref{http://sf.net/p/nco/discussion/9830, NCO Help forum}.
@cindex installation
@cindex @command{autoconf}
@@ -2879,6 +2881,7 @@ They produce identical answers.
@example
ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
ncra 8[56789].nc 8589.nc
+ncra 8?.nc 8589.nc
ncra -p @var{input-path} 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
ncra -n 5,2,1 85.nc 8589.nc
@end example
@@ -2891,8 +2894,11 @@ regular expansion) to @command{ncra}.
In this case @command{ncra} never knows that a regular expression was
used, because the shell intercepts and expands and matches the regular
expression before @command{ncra} is actually invoked.
-The third method uses the @samp{-p @var{input-path}} argument to specify
-the directory where all the input files reside.
+The third method is uses globbing with a different regular expression
+that is less safe (it will also match unwanted files such as
+ at file{81.nc} and @file{8Z.nc} if present).
+The fourth method uses the @samp{-p @var{input-path}} argument to
+specify the directory where all the input files reside.
@acronym{NCO} prepends @var{input-path} (e.g.,
@file{/data/username/model}) to all @var{input-files} (though not to
@var{output-file}).
@@ -4391,6 +4397,9 @@ convention described in @ref{CF Conventions}.
As of @acronym{NCO} version 4.0.8 (April, 2011)
both @samp{-c} and @samp{-C} honor the @acronym{CF} @code{bounds}
convention described in @ref{CF Conventions}.
+As of @acronym{NCO} version 4.4.9 (May, 2015)
+both @samp{-c} and @samp{-C} honor the @acronym{CF} @code{climatology}
+convention described in @ref{CF Conventions}.
As of @acronym{NCO} version 3.9.6 (January, 2009)
both @samp{-c} and @samp{-C} honor the @acronym{CF} @code{coordinates}
convention described in @ref{CF Conventions}.
@@ -6137,8 +6146,11 @@ time = 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, \
@end example
As of @acronym{NCO} version 4.2.1 (August, 2012), @acronym{NCO}
automatically rebases not only the record coordinate (@code{time}, here)
-but also any bounds associated with the record coordinate (e.g.,
- at code{time_bnds}) (@pxref{CF Conventions}).
+but also any cell boundaries associated with the record coordinate
+(e.g., @code{time_bnds}) (@pxref{CF Conventions}).
+As of @acronym{NCO} version 4.4.9 (May, 2015), @acronym{NCO}
+also rebases any climatology boundaries associated with the record
+coordinate (e.g., @code{climatology_bounds}) (@pxref{CF Conventions}).
@html
<a name="mrd"></a> <!-- http://nco.sf.net/nco.html#mrd -->
@@ -6587,7 +6599,7 @@ Eight chunking maps are currently implemented:@*
@cindex @samp{map_nc4}
@cindex Chris Barker
@table @dfn
- at item Chunksize Equals Dimension Size [@emph{default}]
+ at item Chunksize Equals Dimension Size
Definition: Chunksize defaults to dimension size.
Explicitly specify chunksizes for particular dimensions with
@samp{--cnk_dmn} option.@*
@@ -6615,6 +6627,7 @@ dimensions), the chunksize in each non-degenerate dimension is the
@var{cnk_map} key values: @samp{prd}, @samp{cnk_prd}, @samp{map_prd}@*
Mnemonic: @emph{PR}o at emph{D}uct@*
@item Chunksize Lefter Product Matches Scalar Size Specified
+[@emph{default for netCDF3 input}]
Definition: The product of the chunksizes for each variable
(approximately) equals the size specified with the @samp{--cnk_scl}
option.
@@ -6634,7 +6647,7 @@ Variables not chunked in the input file will be chunked with
default mappings.@*
@var{cnk_map} key values: @samp{xst}, @samp{cnk_xst}, @samp{map_xst}@*
Mnemonic: E at emph{X}i at emph{ST}@*
- at item Chunksize Balances 1D and (N-1)-D Access to N-D Variable
+ at item Chunksize Balances 1D and (N-1)-D Access to N-D Variable [@emph{default for netCDF4 input}]
Definition: Chunksizes are chosen so that 1-D and (@var{(N-1)})-D
hyperslabs of @var{3}-D variables (e.g., point-timeseries orn
latitude/longitude surfaces of 3-D fields) both require approximately
@@ -6655,14 +6668,14 @@ This map can be used to reset (portions of) previously chunked files to
default chunking values.@*
@var{cnk_map} key values: @samp{nc4}, @samp{cnk_nc4}, @samp{map_nc4}@*
Mnemonic: @emph{N}et at emph{C}DF at emph{4}@*
- at item Chunksizes use @acronym{NCO} recommendations
+ at item Chunksizes use @acronym{NCO} recommendations [@emph{default for netCDF3 input}]
Definition: Chunksizes are determined by the currently recommended
@acronym{NCO} map.
This is a virtual option that ensures the chunking map is (in the
subjective opinion of the authors) the best map for typical usage.
-As of @acronym{NCO} version 4.4.8 (February, 2015), this virtual map
-calls @samp{map_rew} for 3-D variables and @samp{map_lfp} for all
-others.@*
+As of @acronym{NCO} version 4.4.9 (May, 2015), this virtual map
+calls @samp{map_lfp}.@*
+ at c for 3-D variables and @samp{map_lfp} for all others.@*
@var{cnk_map} key values: @samp{nco}, @samp{cnk_nco}, @samp{map_nco}@*
Mnemonic: @emph{N}et at emph{C}DF at emph{O}perator@*
@@ -6815,7 +6828,7 @@ sacrificing no (lossless) or a tolerable amount (lossy) of precision.
First, @acronym{NCO} can access the lossless @acronym{DEFLATE} algorithm,
a combination of Lempel-Ziv encoding and Huffman coding, algorithm on
any netCDF4 dataset (@pxref{Deflation}).
-Because it is lossless, this algorithm can inflate deflated data to
+Because it is lossless, this algorithm re-inflates deflated data to
their full original precision.
This algorithm is accessed via the @acronym{HDF5} library layer
(which itself calls the @command{zlib} library also used by
@@ -6824,10 +6837,28 @@ This algorithm is accessed via the @acronym{HDF5} library layer
The three lossy compression algorithms are Packing
(@pxref{Packed data}), and two precision-preserving algorithms.
Packing quantizes data of a higher precision type into a lower precision
-type (often @code{NC_SHORT}) and thus stores a fewer (though constant)
+type (often @code{NC_SHORT}) that thus stores a fewer (though constant)
number of bytes per value.
-As shown in the examples, packed data can (and should) be deflated for
-additional space savings.
+Packed data almost unpacks into a (much) smaller dynamic range than
+the floating-point data can represent.
+The type-conversion and reduced dynamic range of the data allows packing
+to eliminate bits typically used to store an exponent, thus improving
+its packing efficiency.
+Packed data also can also be deflated for additional space savings.
+
+A limitation of packing is that unpacking data stored as integers
+into the linear range defined by @code{scale_factor} and
+ at code{add_offset} rapidly loses precision outside of a narrow range of
+floating point values.
+Variables packed as @code{NC_SHORT}, for example, can represent only
+about 64000 discrete values in the range
+ at math{-32768*scale_factor+add_offset} to
+ at math{32767*scale_factor+add_offset}.
+The precision of packed data equals the value of @code{scale_factor},
+and @code{scale_factor} is usually chosen to span the range of valid
+data, not to represent the intrinsic precision of the variable.
+In other words, the precision of packed data cannot be specified in
+advance because it depends on the range of values to quantize.
@cindex @acronym{PPC}
@cindex @acronym{LSD}
@@ -6903,13 +6934,15 @@ respectively.
@cindex @acronym{CF} conventions
@cindex @code{coordinates} attribute
+ at cindex @code{climatology} attribute
@cindex @code{bounds} attribute
Setting @var{var} to @code{default} has the special meaning of applying
the associated @acronym{NSD} or @acronym{DSD} algorithm to all floating
point variables except coordinate variables.
Variables @emph{not affected} by @code{default} include integer and
non-numeric atomic types, coordinates, and variables mentioned in
-the @code{coordinates} or @code{bounds} attribute of any variable.
+the @code{bounds}, @code{climatology}, or @code{coordinates} attribute
+of any variable.
@acronym{NCO} applies @acronym{PPC} to coordinate variables only if
those variables are explicitly specified (i.e., not with the
@samp{default=@var{prc}} mechanism.
@@ -7418,6 +7451,9 @@ precision.
Model results are often computed as @code{NC_DOUBLE} then archived
as @code{NC_FLOAT} to save space.
@ignore
+# Unidata Compression Blog:
+# http://www.unidata.ucar.edu/blogs/developer/en/entry/netcdf_compression
+
# Table entries
fl=${DATA}/dstmch90/dstmch90_clm.nc
fl=${DATA}/hdf/b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
@@ -7442,6 +7478,7 @@ sz_new=`ncks -O -7 -L 1 --ppc default=5 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d '
sz_new=`ncks -O -7 -L 1 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
sz_new=`ncks -O -7 -L 1 --ppc default=3 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
sz_new=`ncks -O -7 -L 1 --ppc default=2 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
+sz_new=`ncks -O -7 -L 1 --ppc default=1 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
sz_new=`ncpdq -O -7 -L 1 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
sz_new=`ncpdq -O -7 -L 9 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
sz_new=`ncpdq -O -3 --ppc default=4 ${fl} ~/foo.nc;bzip2 -1 -f ~/foo.nc;ls -l ~/foo.nc.bz2 | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
@@ -7463,7 +7500,7 @@ The columns are
@item Type
File-type:
@kbd{N3} for netCDF @code{CLASSIC},
- at kbd{N4} for @code{NETCDF4}),
+ at kbd{N4} for @code{NETCDF4},
@kbd{N7} for @code{NETCDF4_CLASSIC} (which comprises netCDF3
data types and structures with netCDF4 storage features like
compression),
@@ -7482,8 +7519,6 @@ compression @acronym{NSD} algorithm.
@item Pck
@kbd{Y} if the default @command{ncpdq} packing algorithm (convert
floating point types to @code{NC_SHORT}) was employed.
-A dash (@kbd{-}) indicates the associated compression feature
-was not employed.
@item Size
Resulting filesize in @acronym{MB}.
@item %
@@ -7493,6 +7528,25 @@ In some cases the original files is already losslessly compressed.
The compression ratios reported are relative to the size of the original
file as distributed, not as optimally losslessly compressed.
@end table
+A dash (@kbd{-}) indicates the associated compression feature
+was not employed.
+ at ignore
+# Lines trimmed from table as redundant/misleading
+ N7 1 4 Y 7.9 22.9 ncpdq --ppc default=4
+ N7 9 4 Y 7.7 22.1 ncpdq -L 9 --ppc default=4
+ N3 B1 4 Y 6.3 18.1 ncpdq --ppc default=4 bzip2 -1
+
+ N7 1 4 Y 26.3 21.9 ncpdq --ppc default=4
+ N7 9 4 Y 25.6 21.4 ncpdq -L 9 --ppc default=4
+ N3 B1 4 Y 20.9 17.4 ncpdq --ppc default=4 bzip2 -1
+
+N4/7 1 4 Y 133.6 54.7 ncpdq -L 1 --ppc default=4
+N4/7 9 4 Y 127.0 52.0 ncpdq -L 9 --ppc default=4
+ N3 B1 4 Y 114.0 46.7 ncpdq --ppc default=4 bzip2 -1
+
+ N4 1 4 Y 13.0 44.0 ncpdq -L 1 --ppc default=4
+ N4 9 4 Y 12.5 42.5 ncpdq -L 9 --ppc default=4
+ at end ignore
@example
# dstmch90_clm.nc
Type LLC PPC Pck Size % Flags and Notes
@@ -7509,10 +7563,8 @@ Type LLC PPC Pck Size % Flags and Notes
N7 1 5 - 25.9 74.6 --ppc default=5
N7 1 4 - 22.3 64.3 --ppc default=4
N7 1 3 - 18.9 54.6 --ppc default=3
- N7 1 3 - 14.5 43.2 --ppc default=2
- N7 1 4 Y 7.9 22.9 ncpdq --ppc default=4
- N7 9 4 Y 7.7 22.1 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 6.3 18.1 ncpdq --ppc default=4 bzip2 -1
+ N7 1 2 - 14.5 43.2 --ppc default=2
+ N7 1 1 - 10.0 29.0 --ppc default=1
# b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
Type LLC PPC Pck Size % Flags and Notes
@@ -7530,9 +7582,7 @@ Type LLC PPC Pck Size % Flags and Notes
N7 1 4 - 69.0 57.6 --ppc default=4
N7 1 3 - 59.3 49.5 --ppc default=3
N7 1 2 - 49.5 41.3 --ppc default=2
- N7 1 4 Y 26.3 21.9 ncpdq --ppc default=4
- N7 9 4 Y 25.6 21.4 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 20.9 17.4 ncpdq --ppc default=4 bzip2 -1
+ N7 1 1 - 38.2 31.9 --ppc default=1
# MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.hdf
Type LLC PPC Pck Size % Flags and Notes
@@ -7554,9 +7604,7 @@ N4/7 1 5 - 221.4 90.6 --ppc default=5
N4/7 1 4 - 201.4 82.4 --ppc default=4
N4/7 1 3 - 185.3 75.9 --ppc default=3
N4/7 1 2 - 150.0 61.4 --ppc default=2
-N4/7 1 4 Y 133.6 54.7 ncpdq -L 1 --ppc default=4
-N4/7 9 4 Y 127.0 52.0 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 114.0 46.7 ncpdq --ppc default=4 bzip2 -1
+N4/7 1 1 - 100.8 41.3 --ppc default=1
# OMI-Aura_L2-OMIAuraSO2_2012m1222-o44888_v01-00-2014m0107t114720.h5
Type LLC PPC Pck Size % Flags and Notes
@@ -7576,8 +7624,7 @@ Type LLC PPC Pck Size % Flags and Notes
N4 1 4 - 23.8 80.7 --ppc default=4
N4 1 3 - 20.3 69.0 --ppc default=3
N4 1 2 - 15.1 51.2 --ppc default=2
- N4 1 4 Y 13.0 44.0 ncpdq -L 1 --ppc default=4
- N4 9 4 Y 12.5 42.5 ncpdq -L 9 --ppc default=4
+ N4 1 1 - 9.9 33.6 --ppc default=1
@end example
@cindex @acronym{NCAR}
@@ -9413,45 +9460,48 @@ Short options: None@*
@acronym{NCO} recognizes some Climate and Forecast (@acronym{CF})
metadata conventions, and applies special rules to such data.
@acronym{NCO} was contemporaneous with @acronym{COARDS} and still
-contains some rules to handle older @acronym{NCAR} model datasets, such as
- at acronym{CCM} and early @acronym{CCSM} datasets, that pre-date
- at acronym{CF}.
+contains some rules to handle older model datasets that pre-date
+ at acronym{CF}, such as @acronym{NCAR} @acronym{CCM} and early
+ at acronym{CCSM} datasets.
Such datasets may not contain an explicit @code{Conventions} attribute
(e.g., @samp{CF-1.0}).
-Nevertheless, we refer to all such metadata collectively as @acronym{CF}
+Nevertheless, we refer to all such metadata collectively as @acronym{CF}
metadata.
Skip this section if you never work with @acronym{CF} metadata.
The latest @acronym{CF} netCDF conventions are described
@uref{http://cfconventions.org/1.6.html, here}.
-Most @acronym{CF} netCDF conventions are transparent to @acronym{NCO}
- at footnote{
-The exception is appending/altering the attributes @code{x_op},
- at code{y_op}, @code{z_op}, and @code{t_op} for variables which have been
-averaged across space and time dimensions.
-This feature is scheduled for future inclusion in @acronym{NCO}.
-}.
+Most @acronym{CF} netCDF conventions are transparent to @acronym{NCO}.
There are no known pitfalls associated with using any @acronym{NCO}
-operator on files adhering to these conventions
- at footnote{
-The @acronym{CF} conventions recommend @code{time} be stored in the
-format @var{time} since @var{base_time}, e.g., the @code{units}
-attribute of @code{time} might be
- at samp{days since 1992-10-8 15:15:42.5 -6:00}.
- at w{A problem} with this format occurs when using @command{ncrcat} to
-concatenate multiple files, each with a different @var{base_time}.
-That is, any @code{time} values from files following the first file to
-be concatenated should be corrected to the @var{base_time} offset
-specified in the @code{units} attribute of @code{time} from the first
-file.
-The analogous problem has been fixed in @acronym{ARM} files
-(@pxref{ARM Conventions}) and could be fixed for @acronym{CF} files if
-there is sufficient lobbying.
-}.
-However, to facilitate maximum user friendliness, @acronym{NCO} applies
-special rules to certain variables in @acronym{CF} files.
-The special functions are not required by the @acronym{CF} netCDF
-conventions, yet experience shows that they simplify data analysis.
+operator on files adhering to these conventions.
+To increase user friendliness, @acronym{NCO} applies special rules to
+certain variables in @acronym{CF} files.
+Rules not required by @acronym{CF} are because experience shows that
+they simplify data analysis.
+
+Here is a general sense of @acronym{NCO}'s @acronym{CF}-support:
+Understanding and implementing @acronym{NUG} recommendations such
+as the history attribute, packing conventions, and attention to units.
+Special handling of variables designated as coordinates, bounds, or
+ancillary variables, so that users subsetting a certain variable
+automatically obtain all related variables.
+Special handling and prevention of meaningless operations
+(e.g., the root-mean-square of latitude) so that coordinates and bounds
+preserve meaningful information even as normal fields are statistically
+transformed.
+Understanding units and certain calendars so that hyperslabs
+may be specified in physical units, and so that user needs not manually
+decode per-file time specifications.
+Understanding auxiliary coordinates so that irregular hyperslabs may be
+specified on complex geometric grids.
+Checking for CF-compliance on netCDF3 and netCDF4 and @acronym{HDF}
+files.
+Converting netCDF4 and @acronym{HDF} files to netCDF3 for strict
+ at acronym{CF}-compliance.
+Finally, a main use of @acronym{NCO} is to ``produce @acronym{CF}'',
+i.e., to improve @acronym{CF}-compliance by annotating metadata,
+renaming objects (attributes, variables, and dimensions), permuting and
+inverting dimensions, recomputing values, and data compression.
@html
<a name="prc_xcp"></a> <!-- http://nco.sf.net/nco.html#prc_xcp -->
@@ -9490,14 +9540,14 @@ pack, etc.) the following variables:
@code{lat_bnds},
@code{lon_bnds},
@code{msk_*}.
-These variables represent the Gaussian weights, the orography field,
+These variables represent Gaussian weights, land/sea masks,
time fields, hybrid pressure coefficients, and latititude/longitude
boundaries.
We call these fields non-coordinate @dfn{grid properties}.
Coordinate grid properties are easy to identify because they are
coordinate variables such as @code{latitude} and @code{longitude}.
-Users usually want @emph{all} grid properties to remain unaltered in the
+Users usually want @emph{all} grid properties to remain unaltered in the
output file.
To be treated as a grid property, the variable name must @emph{exactly}
match a name in the above list, or be a coordinate variable.
@@ -9513,11 +9563,12 @@ or alter the @code{Conventions} attribute.
@html
<a name="cnv_CF_bnd"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_bnd -->
<a name="bnd"></a> <!-- http://nco.sf.net/nco.html#bnd -->
+<a name="bounds"></a> <!-- http://nco.sf.net/nco.html#bounds -->
@end html
@cindex @code{bounds} attribute
@cindex bounds convention
As of @acronym{NCO} version 4.0.8 (April, 2011), @acronym{NCO}
-supports the @acronym{CF} @code{bounds} convention for cell boundaries
+supports the @acronym{CF} @code{bounds} convention for cell boundaries
described
@uref{http://cfconventions.org/1.6.html#cell-boundaries, here}.
This convention allows coordinate variables (including multidimensional
@@ -9534,8 +9585,35 @@ Bounds are subject to the user-specified override switches
@ref{Subsetting Coordinate Variables}.
@html
+<a name="cnv_CF_clm"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_clm -->
+<a name="clm"></a> <!-- http://nco.sf.net/nco.html#clm -->
+<a name="climatology"></a> <!-- http://nco.sf.net/nco.html#climatology -->
+ at end html
+ at cindex @code{climatology} attribute
+ at cindex climatology convention
+As of @acronym{NCO} version 4.4.9 (May, 2015), @acronym{NCO}
+supports the @acronym{CF} @code{climatology} convention for climatology
+statistics described
+ at uref{http://cfconventions.org/Data/cf-conventions/cf-conventions-1.7/build/cf-conventions.html#climatological-statistics, here}.
+This convention allows coordinate variables (including multidimensional
+coordinates) to describe the (possibly nested) periods and statistical
+methods of their associated statistics.
+This is done by naming the variable which contains the periods and
+methods in the @code{climatology} attribute.
+Note that coordinates of rank @math{N} have climatology bounds of rank
+ at math{N+1}.
+NCO-generated subsets of @acronym{CF}-compliant files with @code{climatology}
+attributes will include the variables specified by the @code{climatology}
+attribute, if any.
+Hence the subsets will themselves be @acronym{CF}-compliant.
+Climatology variables are subject to the user-specified override switches
+(including @samp{-c} and @samp{-C}) described in
+ at ref{Subsetting Coordinate Variables}.
+
+ at html
<a name="cnv_CF_ncl"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_ncl -->
<a name="ncl"></a> <!-- http://nco.sf.net/nco.html#ncl -->
+<a name="ancillary"></a> <!-- http://nco.sf.net/nco.html#ancillary -->
@end html
@cindex @code{ancillary_variables} attribute
@cindex ancillary variables convention
@@ -9554,6 +9632,7 @@ Ancillary variables are subject to the user-specified override switches
@html
<a name="cnv_CF_crd"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_crd -->
+<a name="coordinates"></a> <!-- http://nco.sf.net/nco.html#coordinates -->
@end html
@cindex @code{coordinates}
@cindex coordinates convention
@@ -9570,14 +9649,28 @@ As of @acronym{NCO} version 3.9.6 (January, 2009), @acronym{NCO}
supports the @acronym{CF} @code{coordinates} convention described
@uref{http://cfconventions.org/1.6.html#coordinate-system, here}.
This convention allows variables to specify additional coordinates
-(including multidimensional coordinates) in a space-separated string
+(including mult-idimensional coordinates) in a space-separated string
attribute named @code{coordinates}.
@acronym{NCO} attaches any such coordinates to the extraction list along
-with variable and its usual (one-dimensional) coordinates, if any.
+with the variable and its usual (one-dimensional) coordinates, if any.
These auxiliary coordinates are subject to the user-specified override
switches (including @samp{-c} and @samp{-C}) described in
@ref{Subsetting Coordinate Variables}.
+Elimination of reduced dimensions from the @code{coordinates} attribute
+helps ensure that rank-reduced variables become completely independent
+from their former dimensions.
+As of @acronym{NCO} version 4.4.9 (May, 2015), @acronym{NCO}
+may modify the @code{coordinates} attribute to assist this.
+In particular, @command{ncwa} eliminates from the @code{coordinates}
+attribute any dimension that it collapses, e.g., by averaging.
+The former presence of this dimension will usually be indicated by the
+ at acronym{CF} @code{cell_methods} convention described
+ at uref{http://cfconventions.org/1.6.html#cell-methods, here}.
+Hence the @acronym{CF} @code{cell_methods} and @code{coordinates}
+conventions can be said to work in tandem to characterize the state and
+history of a variable's analysis.
+
@html
<a name="cnv_CF_cll_mth"></a> <!-- http://nco.sf.net/nco.html#cnv_CF_cll_mth -->
<a name="cll_mth"></a> <!-- http://nco.sf.net/nco.html#cll_mth -->
@@ -9621,6 +9714,8 @@ These options are only available in the operators @command{ncwa} and
@html
<a name="cnv_ARM"></a> <!-- http://nco.sf.net/nco.html#cnv_ARM -->
+<a name="ARM"></a> <!-- http://nco.sf.net/nco.html#ARM -->
+<a name="arm"></a> <!-- http://nco.sf.net/nco.html#arm -->
@end html
@node ARM Conventions, Operator Version, CF Conventions, Shared features
@section @acronym{ARM} Conventions
@@ -9641,10 +9736,13 @@ section.
@acronym{ARM} data files store time information in two variables, a
scalar, @code{base_time}, and a record variable, @code{time_offset}.
Subtle but serious problems can arise when these type of files are
-just blindly concatenated.
-Therefore @command{ncrcat} has been specially programmed to be able to
-chain together consecutive @acronym{ARM} @var{input-files} and produce
-and an @var{output-file} which contains the correct time information.
+blindly concatenated without @acronym{CF} or @acronym{ARM} support.
+ at command{NCO} implements rebasing (@pxref{Rebasing Time Coordinate})
+as necessary on both @acronym{CF} and @acronym{ARM} files.
+Rebasing chains together consecutive @var{input-files} and produces an
+ at var{output-file} which contains the correct time information.
+For @acronym{ARM} files this is expecially complex because the time
+coordinates are often stored as type @code{NC_CHAR}.
Currently, @command{ncrcat} determines whether a datafile is an
@acronym{ARM} datafile simply by testing for the existence of the
variables @code{base_time}, @code{time_offset}, and the dimension
@@ -10476,7 +10574,15 @@ a1($time.size-1)=a1 at max;
@end verbatim
@end example
-A @emph{value list} can be used on the RHS of an assign...
+ at html
+<a name="nst"></a> <!-- http://nco.sf.net/nco.html#nst -->
+<a name="instantiate"></a> <!-- http://nco.sf.net/nco.html#instantiate -->
+<a name="instantiation"></a> <!-- http://nco.sf.net/nco.html#instantiation -->
+ at end html
+ at cindex instantiate
+ at cindex instantiation
+A @emph{value list} can be used on the RHS of an assignment statement
+to @dfn{instantiate} a variable:
@cindex value list
@example
@verbatim
@@ -10484,6 +10590,7 @@ a1 at trip1={1,2,3} ;
a1 at triplet={a1 at min,(a1 at min+a1@max)/2,a1 at max};
@end verbatim
@end example
+
The netCDF specification allows all attribute types to have a size
greater than one.
The maximum is defined by @code{NC_MAX_ATTRS}.
@@ -10508,6 +10615,8 @@ sng_arr[$sng_len]=a1 at long_name; // sng_arr now contains "Kelvin"
Attributes defined in a script are stored in memory and are written to Output after script completion.
To stop the attribute being written use the ram_delete() method or use a bogus variable name.
+
+
@noindent @strong{Attribute Propagation and Inheritance}
@cindex attribute propagation
@cindex attribute inheritance
@@ -10533,40 +10642,78 @@ If the attribute name contains non-regular characters use ID quoting. See @pxref
@html
<a name="ncap_num"></a> <!-- http://nco.sf.net/nco.html#ncap_num -->
+<a name="ncap_string"></a> <!-- http://nco.sf.net/nco.html#ncap_string -->
@end html
@node Number literals, if statement, Attributes, ncap2 netCDF Arithmetic Processor
@subsection Number literals
@cindex number literals @command{ncap2}
The table below lists the postfix character(s) to add to a number
-literal for type cohesion.
-To use the new netCDF4 types @acronym{NCO} must be compiled/linked to
-the netCDF4 library and the output file must be @acronym{HDF5}.
-
+literal (aka, a naked constant) for explicit type specification.
+The same type-specification rules are used for variables and
+attributes.
+A floating point number without a postfix defaults to @code{NC_DOUBLE},
+while an integer without a postfix defaults to type @code{NC_INT}:
@example
@verbatim
-n1[$time]=1UL; // n1 will now by type @code{NC_UINT}
-n2[$lon]=4b; // n2 will be of type @code{NC_BYTE}
-n3[$lat]=5ull; // n3 will be of type @code{NC_UINT64}
-n3 at a1=6.0d; // attribute will be type @code{NC_DOUBLE}
-n3 at a2=-666L; // attribute will be type @code{NC_INT}
+var[$rlev]=0.1; // Variable will be type @code{NC_DOUBLE}
+var[$lon_grd]=2.0; // Variable will be type @code{NC_DOUBLE}
+var[$gds_crd]=2e3; // Variable will be type @code{NC_DOUBLE}
+var[$gds_crd]=2.0f; // Variable will be type @code{NC_FLOAT} (note "f")
+var[$gds_crd]=2e3f; // Variable will be type @code{NC_FLOAT} (note "f")
+var[$gds_crd]=2; // Variable will be type @code{NC_INT}
+var[$gds_crd]=-3; // Variable will be type @code{NC_INT}
+var[$gds_crd]=2s; // Variable will be type @code{NC_SHORT}
+var[$gds_crd]=-3s; // Variable will be type @code{NC_SHORT}
+var at att=41.; // Attribute will be type @code{NC_DOUBLE}
+var at att=41.f; // Attribute will be type @code{NC_FLOAT}
+var at att=41; // Attribute will be type @code{NC_INT}
+var at att=-21s; // Attribute will be type @code{NC_SHORT}
+var at units="kelvin"; // Attribute will be type @code{NC_CHAR}
@end verbatim
- at end example
+ at end example
+There is no postfix for characters, use a quoted string instead for
+ at code{NC_CHAR}.
+ at command{ncap2} interprets a standard double-quoted string as a value
+of type @code{NC_CHAR}.
+In this case, any receiving variable must be dimensioned as an array
+of @code{NC_CHAR} long enough to hold the value.
-A floating point number without a postfix will default to
- at code{NC_DOUBLE}.
-An integer without a postfix will default to type @code{NC_INT}.
-There is no postfix for characters, use a quoted string instead.
+To use the newer netCDF4 types @acronym{NCO} must be compiled/linked to
+the netCDF4 library and the output file must be of type @code{NETCDF4}:
@example
@verbatim
-n4[$rlev]=0.1 // n4 will be of type @code{NC_DOUBLE}
-n5[$lon_grd]=2.0 // n5 will be of type @code{NC_DOUBLE}
-n6[$gds_crd]=2e3; // n6 will be of type @code{NC_DOUBLE}
-n7[$gds_crd]=2e3f; // n7 will be of type @code{NC_FLOAT}
-n6 at a1=41; // attribute will be type @code{NC_INT}
-n6 at a2=-21; // attribute will be type @code{NC_INT}
-n6 at units="kelvin" // attribute will be type @code{NC_CHAR}
+var[$time]=1UL; // Variable will be type @code{NC_UINT}
+var[$lon]=4b; // Variable will be type @code{NC_BYTE}
+var[$lat]=5ull; // Variable will be type @code{NC_UINT64}
+var[$lat]=5ll; // Variable will be type @code{NC_INT64}
+var at att=6.0d; // Attribute will be type @code{NC_DOUBLE}
+var at att=-666L; // Attribute will be type @code{NC_INT}
+var at att="kelvin"s; // Attribute will be type @code{NC_STRING} (note the "s")
+ at end verbatim
+ at end example
+ at cindex @code{NC_CHAR}
+ at cindex @code{NC_STRING}
+Use a post-quote @samp{s} for @code{NC_STRING}.
+Place the letter @samp{s} immediately following the double-quoted string
+to indicate that the value is of type @code{NC_STRING}.
+In this case, the receiving variable need not have any memory allocated
+to hold the string because netCDF4 handles that memory allocation.
+
+Suppose one creates a file containing an ensemble of model results, and
+wishes to label the record coordinate with the name of each model.
+The @code{NC_STRING} type is well-suited to this because it facilitates
+storing arrays of strings of arbitrary length.
+This is sophisticated, though easy with @command{ncap2}:
+ at example
+ at verbatim
+% ncecat -O -u model cesm.nc ecmwf.nc giss.nc out.nc
+% ncap2 -4 -O -s 'model[$model]={"cesm"s,"ecmwf"s,"giss"s}' out.nc out.nc
@end verbatim
@end example
+The key here to place an @samp{s} character after each double-quoted
+string value to indicate an @code{NC_STRING} type.
+The @samp{-4} ensures the output filetype is netCDF4 in case the input
+filetype is not.
@table @asis
@item @strong{netCDF3/4 Types}
@@ -10593,6 +10740,8 @@ n6 at units="kelvin" // attribute will be type @code{NC_CHAR}
@code{NC_INT64}, a signed 8-byte integer
@item ull|ULL
@code{NC_UINT64}, an unsigned 8-byte integer
+ at item s
+ @code{NC_STRING}, a string of arbitrary length
@end table
@html
@@ -12779,8 +12928,8 @@ This is because shell globbing tries to @dfn{interpolate} the value of
@example
ncap2 -s 'uavg=u.avg($time)' in.nc foo.nc # Correct (recommended)
ncap2 -s uavg=u.avg('$time') in.nc foo.nc # Correct (and dangerous)
-ncap2 -s uavg=u.avg($time) in.nc foo.nc # Fails ($time = '')
-ncap2 -s "uavg=u.avg($time)" in.nc foo.nc # Fails ($time = '')
+ncap2 -s uavg=u.avg($time) in.nc foo.nc # Wrong ($time = '')
+ncap2 -s "uavg=u.avg($time)" in.nc foo.nc # Wrong ($time = '')
@end example
Without the single quotes, the shell replaces @code{$time} with an
empty string.
@@ -14457,7 +14606,7 @@ must be the same size after hyperslabbing
hyperslabs resolve to the same size.
The fixed (i.e., non-record) dimensions should be the same size in
all ensemble members both before and after hyperslabbing, although
-the hypserslabs may (and usually do) change the size of the dimensions
+the hyperslabs may (and usually do) change the size of the dimensions
from the input to the output files.
Prior to this, @command{nces} was only guaranteed to work on hyperslabs
in the record dimension that resolved to the same size.}
@@ -15917,6 +16066,7 @@ include an NcML formatting characters (e.g., commas, angles, quotes).
@html
<a name="ncattget"></a> <!-- http://nco.sf.net/nco.html#ncattget -->
<a name="nclist"></a> <!-- http://nco.sf.net/nco.html#nclist -->
+<a name="ncdmnlist"></a> <!-- http://nco.sf.net/nco.html#ncdmnlist -->
<a name="ncdmnsz"></a> <!-- http://nco.sf.net/nco.html#ncdmnsz -->
<a name="ncrecsz"></a> <!-- http://nco.sf.net/nco.html#ncrecsz -->
<a name="ncmax"></a> <!-- http://nco.sf.net/nco.html#ncmax -->
@@ -15938,6 +16088,7 @@ include an NcML formatting characters (e.g., commas, angles, quotes).
@cindex @acronym{UNIX}
@cindex @command{ncattget}
@cindex @command{ncavg}
+ at cindex @command{ncdmnlist}
@cindex @command{ncdmnsz}
@cindex @command{nclist}
@cindex @command{ncmax}
@@ -16032,6 +16183,8 @@ function ncunits { ncks -M -m ${2} | grep -E -i " attribute [0-9]+: units.+ ${1}
function ncavg { ncwa -y avg -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
# ncavg $var_nm $fl_nm : What is mean of variable?
function ncavg { ncap2 -O -C -v -s "foo=${1}.avg();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
+# ncdmnlist $fl_nm : What dimensions are in file?
+ncdmnlist { ncks --cdl -m ${1} | cut -d ':' -f 1 | cut -d '=' -s -f 1 ; }
# ncdmnsz $dmn_nm $fl_nm : What is dimension size?
function ncdmnsz { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
# nclist $fl_nm : What variables are in file?
@@ -16110,8 +16263,8 @@ Copy all global attributes (and no variables) from @file{in.nc} to
@example
ncks -A -x ~/nco/data/in.nc ~/out.nc
@end example
-The @samp{-x} switch tells @acronym{NCO} to use the complement of the extraction
-list (@pxref{Subsetting Files}).
+The @samp{-x} switch tells @acronym{NCO} to use the complement of the
+extraction list (@pxref{Subsetting Files}).
Since no extraction list is explicitly specified (with @samp{-v}),
the default is to extract all variables.
The complement of all variables is no variables.
@@ -16242,11 +16395,16 @@ ncks -s '%c' -v fl_nm_arr in.nc
Using the @code{%s} format code on strings which are not NUL-terminated
(and thus not technically strings) is likely to result in a core dump.
+ at html
+<a name="xmp_xtr_xcl"></a> <!-- http://nco.sf.net/nco.html#xmp_xtr_xcl -->
+ at end html
@cindex subsetting
@cindex exclusion
@cindex extraction
+ at cindex @code{-x}
@cindex @acronym{CF} conventions
@cindex @code{coordinates} attribute
+ at cindex @code{climatology} attribute
@cindex @code{bounds} attribute
@cindex @code{ancillary_variables} attribute
Create netCDF @file{out.nc} containing all variables, and any associated
@@ -16257,14 +16415,15 @@ ncks -x -v time in.nc out.nc
As a special case of this, consider how to remove a
variable such as @code{time_bounds} that is identified in a
@acronym{CF} Convention (@pxref{CF Conventions}) compliant
- at code{ancillary_variables}, @code{bounds}, or @code{coordinates}
-attribute.
+ at code{ancillary_variables}, @code{bounds}, @code{climatology}, or
+ at code{coordinates} attribute.
@acronym{NCO} subsetting assumes the user wants all ancillary variables,
axes, bounds and coordinates associated with all extracted variables
(@pxref{Subsetting Coordinate Variables}).
-Hence to exclude a @code{ancillary_variables}, @code{bounds}, or
- at code{coordinates} variable while retaining the ``parent'' variable
-(here @code{time}), one must use the @samp{-C} switch:
+Hence to exclude a @code{ancillary_variables}, @code{bounds},
+ at code{climatology}, or @code{coordinates} variable while retaining the
+``parent'' variable (here @code{time}), one must use the @samp{-C}
+switch:
@example
ncks -C -x -v time_bounds in.nc out.nc
@end example
@@ -16939,7 +17098,7 @@ ncra [-3] [-4] [-6] [-7] [-A] [-C] [-c]
[-G @var{gpe_dsc}] [-g @var{grp}[, at dots{}]] [-h] [--hdf] [--hdr_pad @var{nbr}]
[-L @var{dfl_lvl}] [-l @var{path}] [--mro] [-n @var{loop}] [--no_tmp_fl]
[-O] [-o @var{output-file}] [-p @var{path}] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [--rth_dbl|flt]
-[-t @var{thr_nbr}] [--unn] [-v @var{var}[, at dots{}]] [-X ...] [-x] [-y @var{op_typ}]
+[-t @var{thr_nbr}] [--unn] [-v @var{var}[, at dots{}]] [-w wgt] [-X ...] [-x] [-y @var{op_typ}]
[@var{input-files}] [@var{output-file}]
@end example
@@ -16972,16 +17131,43 @@ work correctly.
@command{ncra} supports the @var{stride} argument to the @samp{-d}
hyperslab option (@pxref{Hyperslabs}) for the record dimension only,
@var{stride} is not supported for non-record dimensions.
-
- at command{ncra} weights each record (e.g., time slice) in the
- at var{input-files} equally.
+ at cindex operation types
+ at command{ncra} @emph{always averages} coordinate variables (e.g.,
+ at code{time}) regardless of the arithmetic operation type performed on
+non-coordinate variables (@pxref{Operation Types}).
+
+As of @acronym{NCO} @w{version 4.4.9}, released in May, 2015,
+ at command{ncra} accepts user-specified weights with the @samp{-w}
+(or long-option equivalent @samp{--wgt}, @samp{--wgt_var},
+or @samp{--weight}) switch.
+When no weight is specified, @command{ncra} weights each record (e.g.,
+time slice) in the @var{input-files} equally.
@command{ncra} does not attempt to see if, say, the @code{time}
coordinate is irregularly spaced and thus would require a weighted
average in order to be a true time average.
- at cindex operation types
- at command{ncra} @emph{always averages} coordinate variables regardless of
-the arithmetic operation type performed on the non-coordinate variables.
-(@pxref{Operation Types}).
+
+Weights specified with @samp{-w wgt} may take one of two forms.
+In the first form, the @samp{wgt} argument is a comma-separated list of
+values by which to weight each @emph{file}.
+Thus the number of values must equal the number of files specified
+in the input file list, or else the program will exit.
+In the second form, the @samp{wgt} argument is the name of a weighting
+variable present in every input file.
+The variable may be a scalar or a one-dimensional record variable.
+Scalar weights are applied uniformly to the entire file (i.e., a
+per-file weight).
+One-dimensional weights apply to each corresponding record (i.e.,
+per-record weights), and are suitable for dynamically changing
+timesteps.
+
+Bear these two exceptions in mind when weighting input:
+First, @command{ncra} only applies weights if the arithmetic operation
+type is averaging (@pxref{Operation Types}), i.e., for timeseries mean
+and for timeseries mean absolute value.
+Second, weights are never applied for minimization, square-roots, etc.
+ at command{ncra} @emph{never weights} coordinate variables (e.g.,
+ at code{time}) regardless of the weighting performed on non-coordinate
+variables.
@noindent
@html
@@ -17034,6 +17220,17 @@ averages June, 1985--June, 1989:
ncra -d time,6.,54. ??.nc 8506_8906.nc
@end example
+The @samp{-w wgt} option weights input data @emph{per-file} or
+ at emph{per-timestep}:
+ at example
+ncra -w 31,31,28 dec.nc jan.nc feb.nc out.nc
+ncra -w delta_t in1.nc in2.nc in3.nc out.nc
+ at end example
+The first example weights the input differently per-file to produce
+correctly weighted winter season mean statistics.
+The second example weights the input per-timestep to produce correctly
+weighted mean statistics.
+
@page
@html
<a name="ncrcat"></a> <!-- http://nco.sf.net/nco.html#ncrcat -->
@@ -17415,13 +17612,13 @@ Unforunately while this bug and the related coordinate renaming bug
were fixed in 4.3.1-rc5 (released in December, 2013), a new and related
bug was discovered in October 2014.
-The final known netCDF bug that causes unintended side-effects with
- at command{ncrename} affects (at least) versions 4.3.1--4.3.2 of the
-netCDF4 library (and snapshots at least until October, 2014):
-This bug corrupts values or renamed netCDF4 coordinate variables
-(i.e., variables with underlying dimensions of the same name) and
-other (non-coordinate) variables that include an underlying dimension
-that was renamed.
+Another netCDF bug that causes unintended side-effects with
+ at command{ncrename} affects (at least) versions 4.3.1--4.3.2 and all
+snapshots of the netCDF4 library until January, 2015.
+This bug (fixed in 4.3.3 in February, 2015) corrupts values or renamed
+netCDF4 coordinate variables (i.e., variables with underlying dimensions
+of the same name) and other (non-coordinate) variables that include an
+underlying dimension that was renamed.
In other words, @emph{renaming} coordinate variables and dimensions
succeeds yet it corrupts the values contained by the affected array
variables.
@@ -17436,10 +17633,26 @@ ncrename -O -d lat,tal -v lat,tal ~/bug.nc ~/foo.nc # Broken too
ncks --cdl ~/foo.nc
@end example
To avoid this faulty behavior, either build @acronym{NCO} with netCDF
-version 4.3.3 (TBD) or later, or convert the file to netCDF3 first, then
-rename as intended, then convert back.
+version 4.3.3 or later, or convert the file to netCDF3 first, then
+rename as intended, then convert back.
This bug does not affect renaming of groups or of attributes.
+The final netCDF bug that causes unintended side-effects with
+ at command{ncrename} affects only snapshots from January--February, 2015,
+and released version 4.3.3 (February, 2015).
+It was fixed in netCDF version 4.3.3.1 (March, 2015).
+This bug causes renamed attributes of coordinate variables in netCDF4
+to files to disappear:
+ at example
+ at verbatim
+# Demonstate bug in netCDF4/HDF5 library netCDF-4.3.3
+ncrename -O -h -a /g1/lon at units,new_units ~/nco/data/in_grp.nc ~/foo.nc
+ncks -v /g1/lon ~/foo.nc # Shows units and new_units are both gone
+ at end verbatim
+ at end example
+As of netCDF version 4.3.3.1 (March, 2015) there are no known renaming
+bugs.
+
@cindex global attributes
@cindex group attributes
@cindex attributes, global
@@ -17551,7 +17764,7 @@ these dimensions in a comma-separated list following @samp{-a}, e.g.,
@cindex hyperslab
@cindex @code{-d @var{dim},[@var{min}][,[@var{max}]]}
As with all arithmetic operators, the operation may be restricted to
-an arbitrary hypserslab by employing the @samp{-d} option
+an arbitrary hyperslab by employing the @samp{-d} option
(@pxref{Hyperslabs}).
@command{ncwa} also handles values matching the variable's
@code{_FillValue} attribute correctly.
@@ -18173,8 +18386,9 @@ Excellent bug reports and feature requests.
@cindex Barry deFreese
@cindex Aleksandar Jelenak
@cindex Francesco Lovergine
+ at cindex Bas Couwenberg
@cindex Matej Vela
- at item Daniel Baumann, Nick Bower, Luk Claebs, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela
+ at item Daniel Baumann, Nick Bower, Luk Claebs, Bas Couwenberg, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela
Debian packaging
@cindex Patrice Dumas
@cindex Ed Hill
@@ -18188,9 +18402,11 @@ Gentoo packaging
@cindex Filipe Fernandes
@item Filipe Fernandes
OpenSuse packaging
- at cindex Alexander Hansen
@cindex Takeshi Enomoto
- at item Takeshi Enomoto, Alexander Hansen
+ at cindex Alexander Hansen
+ at cindex Ian Lancaster
+ at cindex Alejandro Soto
+ at item Takeshi Enomoto, Alexander Hansen, Ian Lancaster, Alejandro Soto
Mac OS packaging
@cindex Eric Blake
@item Eric Blake
diff --git a/doc/nco.txt b/doc/nco.txt
deleted file mode 100644
index 80b706e..0000000
--- a/doc/nco.txt
+++ /dev/null
@@ -1,16295 +0,0 @@
-This file documents NCO, a collection of utilities to manipulate and
-analyze netCDF files.
-
- Copyright (C) 1995-2015 Charlie Zender
-
- This is the first edition of the 'NCO User Guide',
-and is consistent with version 2 of 'texinfo.tex'.
-
- Permission is granted to copy, distribute and/or modify this document
-under the terms of the GNU Free Documentation License, Version 1.3 or
-any later version published by the Free Software Foundation; with no
-Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. The
-license is available online at <http://www.gnu.org/copyleft/fdl.html>
-
- The original author of this software, Charlie Zender, wants to
-improve it with the help of your suggestions, improvements, bug-reports,
-and patches.
-Charlie Zender <surname at uci dot edu> (yes, my surname is zender)
-3200 Croul Hall
-Department of Earth System Science
-University of California, Irvine
-Irvine, CA 92697-3100
-
-NCO User Guide
-Foreword
-Summary
-1 Introduction
- 1.1 Availability
- 1.2 How to Use This Guide
- 1.3 Operating systems compatible with NCO
- 1.3.1 Compiling NCO for Microsoft Windows OS
- 1.4 Symbolic Links
- 1.5 Libraries
- 1.6 netCDF2/3/4 and HDF4/5 Support
- 1.7 Help Requests and Bug Reports
-2 Operator Strategies
- 2.1 Philosophy
- 2.2 Climate Model Paradigm
- 2.3 Temporary Output Files
- 2.4 Appending Variables
- 2.5 Simple Arithmetic and Interpolation
- 2.6 Statistics vs. Concatenation
- 2.6.1 Concatenators 'ncrcat' and 'ncecat'
- 2.6.2 Averagers 'nces', 'ncra', and 'ncwa'
- 2.6.3 Interpolator 'ncflint'
- 2.7 Large Numbers of Files
- 2.8 Large Datasets
- 2.9 Memory Requirements
- 2.9.1 Single and Multi-file Operators
- 2.9.2 Memory for 'ncap2'
- 2.10 Performance
-3 Shared Features
- 3.1 Internationalization
- 3.2 Metadata Optimization
- 3.3 OpenMP Threading
- 3.4 Command Line Options
- 3.5 Specifying Input Files
- 3.6 Specifying Output Files
- 3.7 Accessing Remote Files
- 3.7.1 OPeNDAP
- 3.8 Retaining Retrieved Files
- 3.9 File Formats and Conversion
- 3.9.1 File Formats
- 3.9.2 Determining File Format
- 3.9.3 File Conversion
- 3.9.4 Autoconversion
- 3.10 Large File Support
- 3.11 Subsetting Files
- 3.12 Subsetting Coordinate Variables
- 3.13 Group Path Editing
- 3.13.1 Deletion, Truncation, and Flattening of Groups
- 3.13.2 Moving Groups
- 3.13.3 Dismembering Files
- 3.13.4 Checking CF-compliance
- 3.14 C and Fortran Index conventions
- 3.15 Hyperslabs
- 3.16 Stride
- 3.17 Record Appending
- 3.18 Subcycle
- 3.19 Multislabs
- 3.20 Wrapped Coordinates
- 3.21 Auxiliary Coordinates
- 3.22 UDUnits Support
- 3.23 Rebasing Time Coordinate
- 3.24 Multiple Record Dimensions
- 3.25 Missing values
- 3.26 Chunking
- 3.27 Compression
- 3.28 Deflation
- 3.29 MD5 digests
- 3.30 Buffer sizes
- 3.31 RAM disks
- 3.32 Packed data
- Packing Algorithm
- Unpacking Algorithm
- Default Handling of Packed Data
- Default Handling of Packed Data
- 3.33 Operation Types
- 3.34 Type Conversion
- 3.34.1 Automatic type conversion
- 3.34.2 Promoting Single-precision to Double
- 3.34.3 Manual type conversion
- 3.35 Batch Mode
- 3.36 History Attribute
- 3.37 File List Attributes
- 3.38 CF Conventions
- 3.39 ARM Conventions
- 3.40 Operator Version
-4 Reference Manual
- 4.1 'ncap2' netCDF Arithmetic Processor
- 4.1.1 Syntax of 'ncap2' statements
- 4.1.2 Expressions
- 4.1.3 Dimensions
- 4.1.4 Left hand casting
- 4.1.5 Arrays and hyperslabs
- 4.1.6 Attributes
- 4.1.7 Number literals
- 4.1.8 if statement
- 4.1.9 print statement
- 4.1.10 Missing values ncap2
- 4.1.11 Methods and functions
- 4.1.12 RAM variables
- 4.1.13 Where statement
- 4.1.14 Loops
- 4.1.15 Include files
- 4.1.16 'sort' methods
- 4.1.17 Irregular Grids
- 4.1.18 Bilinear interpolation
- 4.1.19 GSL special functions
- 4.1.20 GSL interpolation
- 4.1.21 GSL least-squares fitting
- 4.1.22 GSL statistics
- 4.1.23 GSL random number generation
- 4.1.24 Examples ncap2
- 4.1.25 Intrinsic mathematical methods
- 4.1.26 Operator precedence and associativity
- 4.1.27 ID Quoting
- 4.2 'ncatted' netCDF Attribute Editor
- 4.3 'ncbo' netCDF Binary Operator
- 4.4 'nces' netCDF Ensemble Statistics
- 4.5 'ncecat' netCDF Ensemble Concatenator
- 4.6 'ncflint' netCDF File Interpolator
- 4.7 'ncks' netCDF Kitchen Sink
- Options specific to 'ncks'
- 4.7.1 Filters for 'ncks'
- 4.8 'ncpdq' netCDF Permute Dimensions Quickly
- Packing and Unpacking Functions
- Dimension Permutation
- 4.9 'ncra' netCDF Record Averager
- 4.10 'ncrcat' netCDF Record Concatenator
- 4.11 'ncrename' netCDF Renamer
- 4.12 'ncwa' netCDF Weighted Averager
- 4.12.1 Mask condition
- 4.12.2 Normalization and Integration
-5 Contributing
- 5.1 Contributors
- 5.2 Citation
- 5.3 Proposals for Institutional Funding
-6 Quick Start
- 6.1 Daily data in one file
- 6.2 Monthly data in one file
- 6.3 One time point one file
- 6.4 Multiple files with multiple time points
-7 CMIP5 Example
- 7.1 Combine Files
- 7.2 Global Distribution of Long-term Average
- 7.3 Annual Average over Regions
- 7.4 Monthly Cycle
- 7.5 Regrid MODIS Data
- 7.6 Add Coordinates to MODIS Data
- 7.7 Permute MODIS Coordinates
-8 Parallel
-9 CCSM Example
-10 References
-General Index
-NCO User Guide
-**************
-
-_Note to readers of the NCO User Guide in Info format_: _The NCO User
-Guide in PDF format (./nco.pdf) (also on SourceForge
-(http://nco.sf.net/nco.pdf)) contains the complete NCO documentation._
-This Info documentation is equivalent except it refers you to the
-printed (i.e., DVI, PostScript, and PDF) documentation for description
-of complex mathematical expressions. Also, images appear only in the
-PDF document due to SourceForge limitations.
-
- The netCDF Operators, or NCO, are a suite of programs known as
-operators. The operators facilitate manipulation and analysis of data
-stored in the self-describing netCDF format, available from
-(<http://www.unidata.ucar.edu/packages/netcdf>). Each NCO operator
-(e.g., ncks) takes netCDF input file(s), performs an operation (e.g.,
-averaging, hyperslabbing, or renaming), and outputs a processed netCDF
-file. Although most users of netCDF data are involved in scientific
-research, these data formats, and thus NCO, are generic and are equally
-useful in fields from agriculture to zoology. The NCO User Guide
-illustrates NCO use with examples from the field of climate modeling and
-analysis. The NCO homepage is <http://nco.sf.net>, and there is a
-mirror at <http://dust.ess.uci.edu/nco>.
-
- This documentation is for NCO version 4.4.8. It was last updated 17
-February 2015. Corrections, additions, and rewrites of this
-documentation are very welcome.
-
- Enjoy,
-Charlie Zender
-
-Foreword
-********
-
-NCO is the result of software needs that arose while I worked on
-projects funded by NCAR, NASA, and ARM. Thinking they might prove
-useful as tools or templates to others, it is my pleasure to provide
-them freely to the scientific community. Many users (most of whom I
-have never met) have encouraged the development of NCO. Thanks
-espcially to Jan Polcher, Keith Lindsay, Arlindo da Silva, John Sheldon,
-and William Weibel for stimulating suggestions and correspondence. Your
-encouragment motivated me to complete the 'NCO User Guide'. So if you
-like NCO, send me a note! I should mention that NCO is not connected to
-or officially endorsed by Unidata, ACD, ASP, CGD, or Nike.
-
-Charlie Zender
-May 1997
-Boulder, Colorado
-
-
-
- Major feature improvements entitle me to write another Foreword. In
-the last five years a lot of work has been done to refine NCO. NCO is
-now an open source project and appears to be much healthier for it. The
-list of illustrious institutions that do not endorse NCO continues to
-grow, and now includes UCI.
-
-Charlie Zender
-October 2000
-Irvine, California
-
-
-
- The most remarkable advances in NCO capabilities in the last few
-years are due to contributions from the Open Source community.
-Especially noteworthy are the contributions of Henry Butowsky and Rorik
-Peterson.
-
-Charlie Zender
-January 2003
-Irvine, California
-
-
-
- NCO was generously supported from 2004-2008 by US National Science
-Foundation (NSF) grant IIS-0431203
-(http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0431203). This
-support allowed me to maintain and extend core NCO code, and others to
-advance NCO in new directions: Gayathri Venkitachalam helped implement
-MPI; Harry Mangalam improved regression testing and benchmarking; Daniel
-Wang developed the server-side capability, SWAMP; and Henry Butowsky, a
-long-time contributor, developed 'ncap2'. This support also led NCO to
-debut in professional journals and meetings. The personal and
-professional contacts made during this evolution have been immensely
-rewarding.
-
-Charlie Zender
-March 2008
-Grenoble, France
-
-
-
- The end of the NSF SEI grant in August, 2008 curtailed NCO
-development. Fortunately we could justify supporting Henry Butowsky on
-other research grants until May, 2010 while he developed the key 'ncap2'
-features used in our climate research. And recently the NASA ACCESS
-program commenced funding us to support netCDF4 group functionality.
-Thus NCO will grow and evade bit-rot for the foreseeable future.
-
- I continue to receive with gratitude the thanks of NCO users at
-nearly every scientific meeting I attend. People introduce themselves,
-shake my hand and extol NCO, often effusively, while I grin in stupid
-embarassment. These exchanges lighten me like anti-gravity. Sometimes
-I daydream how many hours NCO has turned from grunt work to productive
-research for researchers world-wide, or from research into early
-happy-hours. It's a cool feeling.
-
-
-Charlie Zender
-April, 2012
-Irvine, California
-
-Summary
-*******
-
-This manual describes NCO, which stands for netCDF Operators. NCO is a
-suite of programs known as "operators". Each operator is a standalone,
-command line program executed at the shell-level like, e.g., 'ls' or
-'mkdir'. The operators take netCDF files (including HDF5 files
-constructed using the netCDF API) as input, perform an operation (e.g.,
-averaging or hyperslabbing), and produce a netCDF file as output. The
-operators are primarily designed to aid manipulation and analysis of
-data. The examples in this documentation are typical applications of
-the operators for processing climate model output. This stems from
-their origin, though the operators are as general as netCDF itself.
-
-1 Introduction
-**************
-
-1.1 Availability
-================
-
-The complete NCO source distribution is currently distributed as a
-"compressed tarfile" from <http://sf.net/projects/nco> and from
-<http://dust.ess.uci.edu/nco/nco.tar.gz>. The compressed tarfile must
-be uncompressed and untarred before building NCO. Uncompress the file
-with 'gunzip nco.tar.gz'. Extract the source files from the resulting
-tarfile with 'tar -xvf nco.tar'. GNU 'tar' lets you perform both
-operations in one step with 'tar -xvzf nco.tar.gz'.
-
- The documentation for NCO is called the 'NCO User Guide'. The 'User
-Guide' is available in PDF, Postscript, HTML, DVI, TeXinfo, and Info
-formats. These formats are included in the source distribution in the
-files 'nco.pdf', 'nco.ps', 'nco.html', 'nco.dvi', 'nco.texi', and
-'nco.info*', respectively. All the documentation descends from a single
-source file, 'nco.texi' (1). Hence the documentation in every format is
-very similar. However, some of the complex mathematical expressions
-needed to describe 'ncwa' can only be displayed in DVI, Postscript, and
-PDF formats.
-
- A complete list of papers and publications on/about NCO is available
-on the NCO homepage. Most of these are freely available. The primary
-refereed publications are ZeM06 and Zen08. These contain copyright
-restrictions which limit their redistribution, but they are freely
-available in preprint form from the NCO.
-
- If you want to quickly see what the latest improvements in NCO are
-(without downloading the entire source distribution), visit the NCO
-homepage at <http://nco.sf.net>. The HTML version of the 'User Guide'
-is also available online through the World Wide Web at URL
-<http://nco.sf.net/nco.html>. To build and use NCO, you must have
-netCDF installed. The netCDF homepage is
-<http://www.unidata.ucar.edu/packages/netcdf>.
-
- New NCO releases are announced on the netCDF list and on the
-'nco-announce' mailing list
-<http://lists.sf.net/mailman/listinfo/nco-announce>.
-
- ---------- Footnotes ----------
-
- (1) To produce these formats, 'nco.texi' was simply run through the
-freely available programs 'texi2dvi', 'dvips', 'texi2html', and
-'makeinfo'. Due to a bug in TeX, the resulting Postscript file,
-'nco.ps', contains the Table of Contents as the final pages. Thus if
-you print 'nco.ps', remember to insert the Table of Contents after the
-cover sheet before you staple the manual.
-
-1.2 How to Use This Guide
-=========================
-
-Detailed instructions about how to download the newest version
-(http://nco.sf.net/#Source), and how to complie source code
-(http://nco.sf.net/#bld), as well as a FAQ (http://nco.sf.net/#FAQ) and
-descriptions of Known Problems (http://nco.sf.net/#bug) etc. are on our
-homepage (<http://nco.sf.net/>).
-
- There are twelve operators in the current version (4.4.8). The
-function of each is explained in *note Reference Manual: Reference
-Manual. Many of the tasks that NCO can accomplish are described during
-the explanation of common NCO Features (*note Shared features::). More
-specific use examples for each operator can be seen by visiting the
-operator-specific examples in the *note Reference Manual::. These can
-be found directly by prepending the operator name with the 'xmp_' tag,
-e.g., <http://nco.sf.net/nco.html#xmp_ncks>. Also, users can type the
-operator name on the shell command line to see all the available
-options, or type, e.g., 'man ncks' to see a help man-page.
-
- NCO is a command-line language. You may either use an operator after
-the prompt (e.g., '$' here), like,
- $ operator [options] input [output]
- or write all commands lines into a shell script, as in the CMIP5
-Example (*note CMIP5 Example::).
-
- If you are new to NCO, the Quick Start (*note Quick Start::) shows
-simple examples about how to use NCO on different kinds of data files.
-More detailed "real-world" examples are in the *note CMIP5 Example:
-CMIP5 Example. The *note Index: General Index. is presents multiple
-keyword entries for the same subject. If these resources do not help
-enough, please *note Help Requests and Bug Reports::.
-
-1.3 Operating systems compatible with NCO
-=========================================
-
-In its time on Earth, NCO has been successfully ported and tested on so
-many 32- and 64-bit platforms that if we did not write them down here we
-would forget their names: IBM AIX 4.x, 5.x, FreeBSD 4.x, GNU/Linux 2.x,
-LinuxPPC, LinuxAlpha, LinuxARM, LinuxSparc64, LinuxAMD64, SGI IRIX 5.x
-and 6.x, MacOS X 10.x, DEC OSF, NEC Super-UX 10.x, Sun SunOS 4.1.x,
-Solaris 2.x, Cray UNICOS 8.x-10.x, and Microsoft Windows (95, 98, NT,
-2000, XP, Vista, 7, 8, 10). If you port the code to a new operating
-system, please send me a note and any patches you required.
-
- The major prerequisite for installing NCO on a particular platform is
-the successful, prior installation of the netCDF library (and, as of
-2003, the UDUnits library). Unidata has shown a commitment to
-maintaining netCDF and UDUnits on all popular UNIX platforms, and is
-moving towards full support for the Microsoft Windows operating system
-(OS). Given this, the only difficulty in implementing NCO on a
-particular platform is standardization of various C-language API system
-calls. NCO code is tested for ANSI compliance by compiling with C99 compilers
-including those from GNU ('gcc -std=c99 -pedantic -D_BSD_SOURCE
--D_POSIX_SOURCE' -Wall) (1), Comeau Computing ('como --c99'), Cray
-('cc'), HP/Compaq/DEC ('cc'), IBM ('xlc -c -qlanglvl=extc99'), Intel
-('icc -std=c99'), LLVM ('clang'), NEC ('cc'), PathScale (QLogic)
-('pathcc -std=c99'), PGI ('pgcc -c9x'), SGI ('cc -c99'), and Sun ('cc').
-NCO (all commands and the 'libnco' library) and the C++ interface to
-netCDF (called 'libnco_c++') comply with the ISO C++ standards as
-implemented by Comeau Computing ('como'), Cray ('CC'), GNU ('g++
--Wall'), HP/Compaq/DEC ('cxx'), IBM ('xlC'), Intel ('icc'), Microsoft
-('MVS'), NEC ('c++'), PathScale (Qlogic) ('pathCC'), PGI ('pgCC'), SGI
-('CC -LANG:std'), and Sun ('CC -LANG:std'). See 'nco/bld/Makefile' and
-'nco/src/nco_c++/Makefile.old' for more details and exact settings.
-
- Until recently (and not even yet), ANSI-compliant has meant
-compliance with the 1989 ISO C-standard, usually called C89 (with minor
-revisions made in 1994 and 1995). C89 lacks variable-size arrays,
-restricted pointers, some useful 'printf' formats, and many mathematical
-special functions. These are valuable features of C99, the 1999 ISO
-C-standard. NCO is C99-compliant where possible and C89-compliant where
-necessary. Certain branches in the code are required to satisfy the
-native SGI and SunOS C compilers, which are strictly ANSI C89 compliant,
-and cannot benefit from C99 features. However, C99 features are fully
-supported by modern AIX, GNU, Intel, NEC, Solaris, and UNICOS compilers.
-NCO requires a C99-compliant compiler as of NCO version 2.9.8, released
-in August, 2004.
-
- The most time-intensive portion of NCO execution is spent in
-arithmetic operations, e.g., multiplication, averaging, subtraction.
-These operations were performed in Fortran by default until August,
-1999. This was a design decision based on the relative speed of
-Fortran-based object code vs. C-based object code in late 1994. C compiler
-vectorization capabilities have dramatically improved since 1994. We
-have accordingly replaced all Fortran subroutines with C functions.
-This greatly simplifies the task of building NCO on nominally
-unsupported platforms. As of August 1999, NCO built entirely in C by
-default. This allowed NCO to compile on any machine with an ANSI
-C compiler. In August 2004, the first C99 feature, the 'restrict' type
-qualifier, entered NCO in version 2.9.8. C compilers can obtain better
-performance with C99 restricted pointers since they inform the compiler
-when it may make Fortran-like assumptions regarding pointer contents
-alteration. Subsequently, NCO requires a C99 compiler to build
-correctly (2).
-
- In January 2009, NCO version 3.9.6 was the first to link to the GNU
-Scientific Library (GSL). GSL must be version 1.4 or later. NCO, in
-particular 'ncap2', uses the GSL special function library to evaluate
-geoscience-relevant mathematics such as Bessel functions, Legendre
-polynomials, and incomplete gamma functions (*note GSL special
-functions::).
-
- In June 2005, NCO version 3.0.1 began to take advantage of C99
-mathematical special functions. These include the standarized gamma
-function (called 'tgamma()' for "true gamma"). NCO automagically takes
-advantage of some GNU Compiler Collection (GCC) extensions to ANSI C.
-
- As of July 2000 and NCO version 1.2, NCO no longer performs
-arithmetic operations in Fortran. We decided to sacrifice executable
-speed for code maintainability. Since no objective statistics were ever
-performed to quantify the difference in speed between the Fortran and
-C code, the performance penalty incurred by this decision is unknown.
-Supporting Fortran involves maintaining two sets of routines for every
-arithmetic operation. The 'USE_FORTRAN_ARITHMETIC' flag is still
-retained in the 'Makefile'. The file containing the Fortran code,
-'nco_fortran.F', has been deprecated but a volunteer (Dr. Frankenstein?)
-could resurrect it. If you would like to volunteer to maintain
-'nco_fortran.F' please contact me.
-
- ---------- Footnotes ----------
-
- (1) The '_BSD_SOURCE' token is required on some Linux platforms where
-'gcc' dislikes the network header files like 'netinet/in.h').
-
- (2) NCO may still build with an ANSI or ISO C89 or C94/95-compliant
-compiler if the C pre-processor undefines the 'restrict' type qualifier,
-e.g., by invoking the compiler with '-Drestrict='''.
-
-1.3.1 Compiling NCO for Microsoft Windows OS
---------------------------------------------
-
-NCO has been successfully ported and tested on most Microsoft Windows
-operating systems including: XP SP2/Vista/7. Support is provided for
-compiling either native Windows executables, using the Microsoft Visual
-Studio 2010 Compiler, or with Cygwin, the UNIX-emulating compatibility
-layer with the GNU toolchain. The switches necessary to accomplish both
-are included in the standard distribution of NCO.
-
- Using Microsoft Visual Studio (MVS), one must build NCO with the C++
-compiler since MVS does not support C99. Qt, a convenient integrated
-development environment, was used to convert the project files to MVS
-format. The Qt files themselves are distributed in the 'nco/qt'
-directory.
-
- Using the freely available Cygwin (formerly gnu-win32) development
-environment (1), the compilation process is very similar to installing
-NCO on a UNIX system. Set the 'PVM_ARCH' preprocessor token to 'WIN32'.
-Note that defining 'WIN32' has the side effect of disabling Internet
-features of NCO (see below). NCO should now build like it does on UNIX.
-
- The least portable section of the code is the use of standard UNIX
-and Internet protocols (e.g., 'ftp', 'rcp', 'scp', 'sftp', 'getuid',
-'gethostname', and header files '<arpa/nameser.h>' and '<resolv.h>').
-Fortunately, these UNIX-y calls are only invoked by the single NCO
-subroutine which is responsible for retrieving files stored on remote
-systems (*note Remote storage::). In order to support NCO on the
-Microsoft Windows platforms, this single feature was disabled (on
-Windows OS only). This was required by Cygwin 18.x--newer versions of
-Cygwin may support these protocols (let me know if this is the case).
-The NCO operators should behave identically on Windows and UNIX
-platforms in all other respects.
-
- ---------- Footnotes ----------
-
- (1) The Cygwin package is available from
-'http://sourceware.redhat.com/cygwin'
-Currently, Cygwin 20.x comes with the GNU C/C++ compilers ('gcc', 'g++'.
-These GNU compilers may be used to build the netCDF distribution itself.
-
-1.4 Symbolic Links
-==================
-
-NCO relies on a common set of underlying algorithms. To minimize
-duplication of source code, multiple operators sometimes share the same
-underlying source. This is accomplished by symbolic links from a single
-underlying executable program to one or more invoked executable names.
-For example, 'nces' and 'ncrcat' are symbolically linked to the 'ncra'
-executable. The 'ncra' executable behaves slightly differently based on
-its invocation name (i.e., 'argv[0]'), which can be 'nces', 'ncra', or
-'ncrcat'. Logically, these are three different operators that happen to
-share the same executable.
-
- For historical reasons, and to be more user friendly, multiple
-synonyms (or pseudonyms) may refer to the same operator invoked with
-different switches. For example, 'ncdiff' is the same as 'ncbo' and
-'ncpack' is the same as 'ncpdq'. We implement the symbolic links and
-synonyms by the executing the following UNIX commands in the directory
-where the NCO executables are installed.
- ln -s -f ncbo ncdiff # ncbo --op_typ='+'
- ln -s -f ncra nces # ncra --pseudonym='nces'
- ln -s -f ncra ncrcat # ncra --pseudonym='ncrcat'
- ln -s -f ncbo ncadd # ncbo --op_typ='+'
- ln -s -f ncbo ncsubtract # ncbo --op_typ='-'
- ln -s -f ncbo ncmultiply # ncbo --op_typ='*'
- ln -s -f ncbo ncdivide # ncbo --op_typ='/'
- ln -s -f ncpdq ncpack # ncpdq
- ln -s -f ncpdq ncunpack # ncpdq --unpack
- # NB: Windows/Cygwin executable/link names have '.exe' suffix, e.g.,
- ln -s -f ncbo.exe ncdiff.exe
- ...
- The imputed command called by the link is given after the comment.
-As can be seen, some these links impute the passing of a command line
-argument to further modify the behavior of the underlying executable.
-For example, 'ncdivide' is a pseudonym for 'ncbo --op_typ='/''.
-
-1.5 Libraries
-=============
-
-Like all executables, the NCO operators can be built using dynamic
-linking. This reduces the size of the executable and can result in
-significant performance enhancements on multiuser systems.
-Unfortunately, if your library search path (usually the
-'LD_LIBRARY_PATH' environment variable) is not set correctly, or if the
-system libraries have been moved, renamed, or deleted since NCO was
-installed, it is possible NCO operators will fail with a message that
-they cannot find a dynamically loaded (aka "shared object" or '.so')
-library. This will produce a distinctive error message, such as
-'ld.so.1: /usr/local/bin/nces: fatal: libsunmath.so.1: can't open file:
-errno=2'. If you received an error message like this, ask your system
-administrator to diagnose whether the library is truly missing (1), or
-whether you simply need to alter your library search path. As a final
-remedy, you may re-compile and install NCO with all operators statically
-linked.
-
- ---------- Footnotes ----------
-
- (1) The 'ldd' command, if it is available on your system, will tell
-you where the executable is looking for each dynamically loaded library.
-Use, e.g., 'ldd `which nces`'.
-
-1.6 netCDF2/3/4 and HDF4/5 Support
-==================================
-
-netCDF version 2 was released in 1993. NCO (specifically 'ncks') began
-soon after this in 1994. netCDF 3.0 was released in 1996, and we were
-not exactly eager to convert all code to the newer, less tested netCDF
-implementation. One netCDF3 interface call ('nc_inq_libvers') was added
-to NCO in January, 1998, to aid in maintainance and debugging. In
-March, 2001, the final NCO conversion to netCDF3 was completed
-(coincidentally on the same day netCDF 3.5 was released). NCO versions 2.0
-and higher are built with the '-DNO_NETCDF_2' flag to ensure no netCDF2
-interface calls are used.
-
- However, the ability to compile NCO with only netCDF2 calls is worth
-maintaining because HDF version 4, aka HDF4 or simply HDF, (1)
-(available from HDF (http://hdfgroup.org)) supports only the netCDF2
-library calls (see
-<http://hdfgroup.org/UG41r3_html/SDS_SD.fm12.html#47784>). There are
-two versions of HDF. Currently HDF version 4.x supports the full netCDF2
-API and thus NCO version 1.2.x. If NCO version 1.2.x (or earlier) is
-built with only netCDF2 calls then all NCO operators should work with
-HDF4 files as well as netCDF files (2). The preprocessor token
-'NETCDF2_ONLY' exists in NCO version 1.2.x to eliminate all netCDF3
-calls. Only versions of NCO numbered 1.2.x and earlier have this
-capability.
-
- HDF version 5 became available in 1999, but did not support netCDF
-(or, for that matter, Fortran) as of December 1999. By early 2001, HDF5
-did support Fortran90. Thanks to an NSF-funded "harmonization"
-partnership, HDF began to fully support the netCDF3 read interface
-(which is employed by NCO 2.x and later). In 2004, Unidata and THG
-began a project to implement the HDF5 features necessary to support the
-netCDF API. NCO version 3.0.3 added support for reading/writing
-netCDF4-formatted HDF5 files in October, 2005. See *note File Formats
-and Conversion:: for more details.
-
- HDF support for netCDF was completed with HDF5 version version 1.8 in
-2007. The netCDF front-end that uses this HDF5 back-end was completed
-and released soon after as netCDF version 4. Download it from the
-netCDF4 (http://my.unidata.ucar.edu/content/software/netcdf/netcdf-4)
-website.
-
- NCO version 3.9.0, released in May, 2007, added support for all
-netCDF4 atomic data types except 'NC_STRING'. Support for 'NC_STRING',
-including ragged arrays of strings, was finally added in version 3.9.9,
-released in June, 2009. Support for additional netCDF4 features has
-been incremental. We add one netCDF4 feature at a time. You must build
-NCO with netCDF4 to obtain this support.
-
- NCO supports many netCDF4 features including atomic data types,
-Lempel-Ziv compression (deflation), chunking, and groups. The new
-atomic data types are 'NC_UBYTE', 'NC_USHORT', 'NC_UINT', 'NC_INT64',
-and 'NC_UINT64'. Eight-byte integer support is an especially useful
-improvement from netCDF3. All NCO operators support these types, e.g.,
-'ncks' copies and prints them, 'ncra' averages them, and 'ncap2'
-processes algebraic scripts with them. 'ncks' prints compression
-information, if any, to screen.
-
- NCO version 3.9.1 (June, 2007) added support for netCDF4 Lempel-Ziv
-deflation. Lempel-Ziv deflation is a lossless compression technique.
-See *note Deflation:: for more details.
-
- NCO version 3.9.9 (June, 2009) added support for netCDF4 chunking in
-'ncks' and 'ncecat'. NCO version 4.0.4 (September, 2010) completed
-support for netCDF4 chunking in the remaining operators. See *note
-Chunking:: for more details.
-
- NCO version 4.2.2 (October, 2012) added support for netCDF4 groups in
-'ncks' and 'ncecat'. Group support for these operators was complete
-(e.g., regular expressions to select groups and Group Path Editing) as
-of NCO version 4.2.6 (March, 2013). See *note Group Path Editing:: for
-more details. Group support for all other operators was finished in the
-NCO version 4.3.x series completed in December, 2013.
-
- Support for netCDF4 in the first arithmetic operator, 'ncbo', was
-introduced in NCO version 4.3.0 (March, 2013). NCO version 4.3.1 (May,
-2013) completed this support and introduced the first example of
-automatic group broadcasting. See *note ncbo netCDF Binary Operator::
-for more details.
-
- netCDF4-enabled NCO handles netCDF3 files without change. In
-addition, it automagically handles netCDF4 (HDF5) files: If you feed NCO
-netCDF3 files, it produces netCDF3 output. If you feed NCO netCDF4
-files, it produces netCDF4 output. Use the handy-dandy '-4' switch to
-request netCDF4 output from netCDF3 input, i.e., to convert netCDF3 to
-netCDF4. See *note File Formats and Conversion:: for more details.
-
- When linked to a netCDF library that was built with HDF4 support (3),
-NCO automatically supports reading HDF4 files and writing them as
-netCDF3/netCDF4/HDF5 files. NCO can only write through the netCDF API,
-which can only write netCDF3/netCDF4/HDF5 files. So NCO can _read_ HDF4
-files, perform manipulations and calculations, and then it must _write_
-the results in netCDF format.
-
- NCO support for HDF4 has been quite functional since December, 2013.
-For best results install NCO versions 4.4.0 or later on top of netCDF
-versions 4.3.1 or later. Getting to this point has been an iterative
-effort where Unidata improved netCDF library capabilities in response to
-our requests. NCO versions 4.3.6 and earlier do not explicitly support
-HDF4, yet should work with HDF4 if compiled with a version of netCDF
-(4.3.2 or later?) that does not unexpectedly die when probing HDF4
-files with standard netCDF calls. NCO versions 4.3.7-4.3.9
-(October-December, 2013) use a special flag to workaround netCDF HDF4
-issues. The user must tell these versions of NCO that an input file is
-HDF4 format by using the '--hdf4' switch.
-
- When compiled with netCDF version 4.3.1 (20140116) or later, NCO
-versions 4.4.0 (January, 2014) and later more gracefully handle HDF4
-files. In particular, the '--hdf4' switch is obsolete. Current
-versions of NCO use netCDF to determine automatically whether the
-underlying file is HDF4, and then take appropriate precautions to avoid
-netCDF4 API calls that fail when applied to HDF4 files (e.g.,
-'nc_inq_var_chunking()', 'nc_inq_var_deflate()'). When compiled with
-netCDF version 4.3.2 (20140423) or earlier, NCO will report that
-chunking and deflation properties of HDF4 files as 'HDF4_UNKNOWN',
-because determining those properties was impossible. When compiled with
-netCDF version 4.3.3-rc2 (20140925) or later, NCO versions 4.4.6
-(October, 2014) and later fully support chunking and deflation features
-of HDF4 files. The '--hdf4' switch is supported (for backwards
-compatibility) yet redundant (i.e., does no harm) with current versions
-of NCO and netCDF.
-
- Converting HDF4 files to netCDF: Since NCO reads HDF4 files natively,
-it is now easy to convert HDF4 files to netCDF files directly, e.g.,
- ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
- ncks --hdf4 fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.3.7-4.3.9)
- The most efficient and accurate way to convert HDF4 data to netCDF
-format is to convert to netCDF4 using NCO as above. Many HDF4 producers
-(NASA!) love to use netCDF4 types, e.g., unsigned bytes, so this
-procedure is the most typical. Conversion of HDF4 to netCDF4 as above
-suffices when the data will only be processed by NCO and other
-netCDF4-aware tools.
-
- However, many tools are not fully netCDF4-aware, and so conversion to
-netCDF3 may be desirable. Obtaining any netCDF file from an HDF4 is
-easy:
- ncks -3 fl.hdf fl.nc # HDF4->netCDF3 (NCO 4.4.0+, netCDF 4.3.1+)
- ncks -4 fl.hdf fl.nc # HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
- ncks -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (NCO 4.4.0+, ...)
- ncks -7 -L 1 fl.hdf fl.nc # HDF4->netCDF4 classic (NCO 4.4.0+, ...)
- ncks --hdf4 -3 fl.hdf fl.nc # HDF4->netCDF3 (netCDF 4.3.0-)
- ncks --hdf4 -4 fl.hdf fl.nc # HDF4->netCDF4 (netCDF 4.3.0-)
- ncks --hdf4 -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (netCDF 4.3.0-)
- ncks --hdf4 -7 fl.hdf fl.nc # HDF4->netCDF4 classic (netCDF 4.3.0-)
- As of NCO version 4.4.0 (January, 2014), these commands work even
-when the HDF4 file contains netCDF4 atomic types (e.g., unsigned bytes,
-64-bit integers) because NCO can autoconvert everything to atomic types
-supported by netCDF3 (4).
-
- As of NCO version 4.4.4 (May, 2014) both 'ncl_convert2nc' and NCO
-have built-in, automatic workarounds to handle element names that
-contain characters that are legal in HDF though are illegal in netCDF.
-For example, slashes and leading special characters are are legal in HDF
-and illegal in netCDF element (i.e., group, variable, dimension, and
-attribute) names. NCO converts these forbidden characters to
-underscores, and retains the original names of variables in
-automatically produced attributes named 'hdf_name' (5).
-
- Finally, in February 2014, we learned that the HDF group has a
-project called H4CF (described here
-(http://hdfeos.org/software/h4cflib.php)) whose goal is to make HDF4
-files accessible to CF tools and conventions. Their project includes a
-tool named 'h4tonccf' that converts HDF4 files to netCDF3 or netCDF4
-files. We are not yet sure what advantages or features 'h4tonccf' has
-that are not in NCO, though we suspect both methods have their own
-advantages. Corrections welcome.
-
- As of 2012, netCDF4 is relatively stable software. Problems with
-netCDF4 and HDF libraries have mainly been fixed. Binary NCO
-distributions shipped as RPMs and as debs have used the netCDF4 library
-since 2010 and 2011, respectively.
-
- One must often build NCO from source to obtain netCDF4 support.
-Typically, one specifies the root of the netCDF4 installation directory.
-Do this with the 'NETCDF4_ROOT' variable. Then use your preferred NCO
-build mechanism, e.g.,
- export NETCDF4_ROOT=/usr/local/netcdf4 # Set netCDF4 location
- cd ~/nco;./configure --enable-netcdf4 # Configure mechanism -or-
- cd ~/nco/bld;./make NETCDF4=Y allinone # Old Makefile mechanism
-
- We carefully track the netCDF4 releases, and keep the netCDF4 atomic
-type support and other features working. Our long term goal is to
-utilize more of the extensive new netCDF4 feature set. The next major
-netCDF4 feature we are likely to utilize is parallel I/O. We will enable
-this in the MPI netCDF operators.
-
- ---------- Footnotes ----------
-
- (1) The Hierarchical Data Format, or HDF, is another self-describing
-data format similar to, but more elaborate than, netCDF. HDF comes in
-two flavors, HDF4 and HDF5. Often people use the shorthand HDF to refer
-to the older format HDF4. People almost always use HDF5 to refer to
-HDF5.
-
- (2) One must link the NCO code to the HDF4 MFHDF library instead of
-the usual netCDF library. Apparently 'MF' stands for Multi-file not for
-Mike Folk. In any case, until about 2007 the MFHDF library only
-supported netCDF2 calls. Most people will never again install NCO 1.2.x
-and so will never use NCO to write HDF4 files. It is simply too much
-trouble.
-
- (3) The procedure for doing this is documented at
-<http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html>.
-
- (4) Prior to NCO version 4.4.0 (January, 2014), we recommended the
-'ncl_convert2nc' tool to convert HDF to netCDF3 when both these are
-true: 1. You must have netCDF3 and 2. the HDF file contains netCDF4
-atomic types. More recent versions of NCO handle this problem fine, and
-include other advantages so we no longer recommend 'ncl_convert2nc'
-because 'ncks' is faster and more space-efficient. Both automatically
-convert netCDF4 types to netCDF3 types, yet 'ncl_convert2nc' cannot
-produce full netCDF4 files. In contrast, 'ncks' will happily convert
-HDF straight to netCDF4 files with netCDF4 types. Hence 'ncks' can and
-does preserve the variable types. Unsigned bytes stay unsigned bytes.
-64-bit integers stay 64-bit integers. Strings stay strings. Hence,
-'ncks' conversions often result in smaller files than 'ncl_convert2nc'
-conversions. A tool useful for converting netCDF3 to netCDF4 files is
-the Python script 'nc3tonc4' by Jeff Whitaker.
-
- (5) Two real-world examples: NCO translates the NASA CERES dimension
-'(FOV) Footprints' to '_FOV_ Footprints', and 'Cloud & Aerosol, Cloud
-Only, Clear Sky w/Aerosol, and Clear Sky' (yes, the dimension name
-includes whitespace and special characters) to 'Cloud & Aerosol, Cloud
-Only, Clear Sky w_Aerosol, and Clear Sky' 'ncl_convert2nc' makes the
-element name netCDF-safe in a slightly different manner, and also stores
-the original name in the 'hdf_name' attribute.
-
-1.7 Help Requests and Bug Reports
-=================================
-
-We generally receive three categories of mail from users: help requests,
-bug reports, and feature requests. Notes saying the equivalent of "Hey,
-NCO continues to work great and it saves me more time everyday than it
-took to write this note" are a distant fourth.
-
- There is a different protocol for each type of request. The
-preferred etiquette for all communications is via NCO Project Forums.
-Do not contact project members via personal e-mail unless your request
-comes with money or you have damaging information about our personal
-lives. _Please use the Forums_--they preserve a record of the questions
-and answers so that others can learn from our exchange. Also, since NCO
-is government-funded, this record helps us provide program officers with
-information they need to evaluate our project.
-
- Before posting to the NCO forums described below, you might first
-register (https://sf.net/account/register.php) your name and email
-address with SourceForge.net or else all of your postings will be
-attributed to _nobody_. Once registered you may choose to _monitor_ any
-forum and to receive (or not) email when there are any postings
-including responses to your questions. We usually reply to the forum
-message, not to the original poster.
-
- If you want us to include a new feature in NCO, check first to see if
-that feature is already on the TODO (file:./TODO) list. If it is, why
-not implement that feature yourself and send us the patch? If the
-feature is not yet on the list, then send a note to the NCO Discussion
-forum (http://sf.net/p/nco/discussion/9829).
-
- Read the manual before reporting a bug or posting a help request.
-Sending questions whose answers are not in the manual is the best way to
-motivate us to write more documentation. We would also like to
-accentuate the contrapositive of this statement. If you think you have
-found a real bug _the most helpful thing you can do is simplify the
-problem to a manageable size and then report it_. The first thing to do
-is to make sure you are running the latest publicly released version of
-NCO.
-
- Once you have read the manual, if you are still unable to get NCO to
-perform a documented function, submit a help request. Follow the same
-procedure as described below for reporting bugs (after all, it might be
-a bug). That is, describe what you are trying to do, and include the
-complete commands (run with '-D 5'), error messages, and version of NCO
-(with '-r'). Post your help request to the NCO Help forum
-(http://sf.net/p/nco/discussion/9830).
-
- If you think you used the right command when NCO misbehaves, then you
-might have found a bug. Incorrect numerical answers are the highest
-priority. We usually fix those within one or two days. Core dumps and
-sementation violations receive lower priority. They are always fixed,
-eventually.
-
- How do you simplify a problem that reveal a bug? Cut out extraneous
-variables, dimensions, and metadata from the offending files and re-run
-the command until it no longer breaks. Then back up one step and report
-the problem. Usually the file(s) will be very small, i.e., one variable
-with one or two small dimensions ought to suffice. Run the operator
-with '-r' and then run the command with '-D 5' to increase the verbosity
-of the debugging output. It is very important that your report contain
-the exact error messages and compile-time environment. Include a copy
-of your sample input file, or place one on a publically accessible
-location, of the file(s). Post the full bug report to the NCO Project
-buglist (http://sf.net/bugs/?group_id=3331).
-
- Build failures count as bugs. Our limited machine access means we
-cannot fix all build failures. The information we need to diagnose, and
-often fix, build failures are the three files output by GNU build tools,
-'nco.config.log.${GNU_TRP}.foo', 'nco.configure.${GNU_TRP}.foo', and
-'nco.make.${GNU_TRP}.foo'. The file 'configure.eg' shows how to produce
-these files. Here '${GNU_TRP}' is the "GNU architecture triplet", the
-CHIP-VENDOR-OS string returned by 'config.guess'. Please send us your
-improvements to the examples supplied in 'configure.eg'. The
-regressions archive at <http://dust.ess.uci.edu/nco/rgr> contains the
-build output from our standard test systems. You may find you can solve
-the build problem yourself by examining the differences between these
-files and your own.
-
-2 Operator Strategies
-*********************
-
-2.1 Philosophy
-==============
-
-The main design goal is command line operators which perform useful,
-scriptable operations on netCDF files. Many scientists work with models
-and observations which produce too much data to analyze in tabular
-format. Thus, it is often natural to reduce and massage this raw or
-primary level data into summary, or second level data, e.g., temporal or
-spatial averages. These second level data may become the inputs to
-graphical and statistical packages, and are often more suitable for
-archival and dissemination to the scientific community. NCO performs a
-suite of operations useful in manipulating data from the primary to the
-second level state. Higher level interpretive languages (e.g., IDL,
-Yorick, Matlab, NCL, Perl, Python), and lower level compiled languages
-(e.g., C, Fortran) can always perform any task performed by NCO, but
-often with more overhead. NCO, on the other hand, is limited to a much
-smaller set of arithmetic and metadata operations than these full blown
-languages.
-
- Another goal has been to implement enough command line switches so
-that frequently used sequences of these operators can be executed from a
-shell script or batch file. Finally, NCO was written to consume the
-absolute minimum amount of system memory required to perform a given
-job. The arithmetic operators are extremely efficient; their exact
-memory usage is detailed in *note Memory Requirements::.
-
-2.2 Climate Model Paradigm
-==========================
-
-NCO was developed at NCAR to aid analysis and manipulation of datasets
-produced by General Circulation Models (GCMs). GCM datasets share many
-features with other gridded scientific datasets and so provide a useful
-paradigm for the explication of the NCO operator set. Examples in this
-manual use a GCM paradigm because latitude, longitude, time, temperature
-and other fields related to our natural environment are as easy to
-visualize for the layman as the expert.
-
-2.3 Temporary Output Files
-==========================
-
-NCO operators are designed to be reasonably fault tolerant, so that a
-system failure or user-abort of the operation (e.g., with 'C-c') does
-not cause loss of data. The user-specified OUTPUT-FILE is only created
-upon successful completion of the operation (1). This is accomplished
-by performing all operations in a temporary copy of OUTPUT-FILE. The
-name of the temporary output file is constructed by appending
-'.pid<PROCESS ID>.<OPERATOR NAME>.tmp' to the user-specified OUTPUT-FILE
-name. When the operator completes its task with no fatal errors, the
-temporary output file is moved to the user-specified OUTPUT-FILE. This
-imbues the process with fault-tolerance since fatal error (e.g., disk
-space fills up) affect only the temporary output file, leaving the final
-output file not created if it did not already exist. Note the
-construction of a temporary output file uses more disk space than just
-overwriting existing files "in place" (because there may be two copies
-of the same file on disk until the NCO operation successfully concludes
-and the temporary output file overwrites the existing OUTPUT-FILE).
-Also, note this feature increases the execution time of the operator by
-approximately the time it takes to copy the OUTPUT-FILE (2). Finally,
-note this fault-tolerant feature allows the OUTPUT-FILE to be the same
-as the INPUT-FILE without any danger of "overlap".
-
- Over time many "power users" have requested a way to turn-off the
-fault-tolerance safety feature of automatically creating a temporary
-file. Often these users build and execute production data analysis
-scripts that are repeated frequently on large datasets. Obviating an
-extra file write can then conserve significant disk space and time. For
-this purpose NCO has, since version 4.2.1 in August, 2012, made
-configurable the controls over temporary file creation. The
-'--wrt_tmp_fl' and equivalent '--write_tmp_fl' switches ensure NCO
-writes output to an intermediate temporary file. This is and has always
-been the default behavior so there is currently no need to specify these
-switches. However, the default may change some day, especially since
-writing to RAM disks (*note RAM disks::) may some day become the
-default. The '--no_tmp_fl' switch causes NCO to write directly to the
-final output file instead of to an intermediate temporary file. "Power
-users" may wish to invoke this switch to increase performance (i.e.,
-reduce wallclock time) when manipulating large files. When eschewing
-temporary files, users may forsake the ability to have the same name for
-both OUTPUT-FILE and INPUT-FILE since, as described above, the temporary
-file prevented overlap issues. However, if the user creates the output
-file in RAM (*note RAM disks::) then it is still possible to have the
-same name for both OUTPUT-FILE and INPUT-FILE.
- ncks in.nc out.nc # Default: create out.pid.tmp.nc then move to out.nc
- ncks --wrt_tmp_fl in.nc out.nc # Same as default
- ncks --no_tmp_fl in.nc out.nc # Create out.nc directly on disk
- ncks --no_tmp_fl in.nc in.nc # ERROR-prone! Overwrite in.nc with itself
- ncks --create_ram --no_tmp_fl in.nc in.nc # Create in RAM, write to disk
- ncks --open_ram --no_tmp_fl in.nc in.nc # Read into RAM, write to disk
-There is no reason to expect the fourth example to work. The behavior
-of overwriting a file while reading from the same file is undefined,
-much as is the shell command 'cat foo > foo'. Although it may "work" in
-some cases, it is unreliable. One way around this is to use
-'--create_ram' so that the output file is not written to disk until the
-input file is closed, *Note RAM disks::. However, as of 20130328, the
-behavior of the '--create_ram' and '--open_ram' examples has not been
-thoroughly tested.
-
- The NCO authors have seen compelling use cases for utilizing the RAM
-switches, though not (yet) for combining them with '--no_tmp_fl'. NCO
-implements both options because they are largely independent of
-eachother. It is up to "power users" to discover which best fit their
-needs. We welcome accounts of your experiences posted to the forums.
-
- Other safeguards exist to protect the user from inadvertently
-overwriting data. If the OUTPUT-FILE specified for a command is a
-pre-existing file, then the operator will prompt the user whether to
-overwrite (erase) the existing OUTPUT-FILE, attempt to append to it, or
-abort the operation. However, in processing large amounts of data, too
-many interactive questions slows productivity. Therefore NCO also
-implements two ways to override its own safety features, the '-O' and
-'-A' switches. Specifying '-O' tells the operator to overwrite any
-existing OUTPUT-FILE without prompting the user interactively.
-Specifying '-A' tells the operator to attempt to append to any existing
-OUTPUT-FILE without prompting the user interactively. These switches
-are useful in batch environments because they suppress interactive
-keyboard input.
-
- ---------- Footnotes ----------
-
- (1) The 'ncrename' and 'ncatted' operators are exceptions to this
-rule. *Note ncrename netCDF Renamer::.
-
- (2) The OS-specific system move command is used. This is 'mv' for
-UNIX, and 'move' for Windows.
-
-2.4 Appending Variables
-=======================
-
-Adding variables from one file to another is often desirable. This is
-referred to as "appending", although some prefer the terminology
-"merging" (1) or "pasting". Appending is often confused with what NCO
-calls "concatenation". In NCO, concatenation refers to splicing a
-variable along the record dimension. The length along the record
-dimension of the output is the sum of the lengths of the input files.
-Appending, on the other hand, refers to copying a variable from one file
-to another file which may or may not already contain the variable (2).
-NCO can append or concatenate just one variable, or all the variables in
-a file at the same time.
-
- In this sense, 'ncks' can append variables from one file to another
-file. This capability is invoked by naming two files on the command
-line, INPUT-FILE and OUTPUT-FILE. When OUTPUT-FILE already exists, the
-user is prompted whether to "overwrite", "append/replace", or "exit"
-from the command. Selecting "overwrite" tells the operator to erase the
-existing OUTPUT-FILE and replace it with the results of the operation.
-Selecting "exit" causes the operator to exit--the OUTPUT-FILE will not
-be touched in this case. Selecting "append/replace" causes the operator
-to attempt to place the results of the operation in the existing
-OUTPUT-FILE, *Note ncks netCDF Kitchen Sink::.
-
- The simplest way to create the union of two files is
- ncks -A fl_1.nc fl_2.nc
- This puts the contents of 'fl_1.nc' into 'fl_2.nc'. The '-A' is
-optional. On output, 'fl_2.nc' is the union of the input files,
-regardless of whether they share dimensions and variables, or are
-completely disjoint. The append fails if the input files have
-differently named record dimensions (since netCDF supports only one), or
-have dimensions of the same name but different sizes.
-
- ---------- Footnotes ----------
-
- (1) The terminology "merging" is reserved for an (unwritten) operator
-which replaces hyperslabs of a variable in one file with hyperslabs of
-the same variable from another file
-
- (2) Yes, the terminology is confusing. By all means mail me if you
-think of a better nomenclature. Should NCO use "paste" instead of
-"append"?
-
-2.5 Simple Arithmetic and Interpolation
-=======================================
-
-Users comfortable with NCO semantics may find it easier to perform some
-simple mathematical operations in NCO rather than higher level
-languages. 'ncbo' (*note ncbo netCDF Binary Operator::) does file
-addition, subtraction, multiplication, division, and broadcasting. It
-even does group broadcasting. 'ncflint' (*note ncflint netCDF File
-Interpolator::) does file addition, subtraction, multiplication and
-interpolation. Sequences of these commands can accomplish simple yet
-powerful operations from the command line.
-
-2.6 Statistics vs. Concatenation
-================================
-
-The most frequently used operators of NCO are probably the
-"statisticians" (i.e., tools that do statistics) and concatenators.
-Because there are so many types of statistics like averaging (e.g.,
-across files, within a file, over the record dimension, over other
-dimensions, with or without weights and masks) and of concatenating
-(across files, along the record dimension, along other dimensions),
-there are currently no fewer than five operators which tackle these two
-purposes: 'ncra', 'nces', 'ncwa', 'ncrcat', and 'ncecat'. These
-operators do share many capabilities (1), though each has its unique
-specialty. Two of these operators, 'ncrcat' and 'ncecat', concatenate
-hyperslabs across files. The other two operators, 'ncra' and 'nces',
-compute statistics across (and/or within) files (2). First, let's
-describe the concatenators, then the statistics tools.
-
- ---------- Footnotes ----------
-
- (1) Currently 'nces' and 'ncrcat' are symbolically linked to the
-'ncra' executable, which behaves slightly differently based on its
-invocation name (i.e., 'argv[0]'). These three operators share the same
-source code, and merely have different inner loops.
-
- (2) The third averaging operator, 'ncwa', is the most sophisticated
-averager in NCO. However, 'ncwa' is in a different class than 'ncra'
-and 'nces' because it operates on a single file per invocation (as
-opposed to multiple files). On that single file, however, 'ncwa'
-provides a richer set of averaging options--including weighting,
-masking, and broadcasting.
-
-2.6.1 Concatenators 'ncrcat' and 'ncecat'
------------------------------------------
-
-Joining together independent files along a common record dimension is
-called "concatenation". 'ncrcat' is designed for concatenating record
-variables, while 'ncecat' is designed for concatenating fixed length
-variables. Consider five files, '85.nc', '86.nc', ... '89.nc' each
-containing a year's worth of data. Say you wish to create from them a
-single file, '8589.nc' containing all the data, i.e., spanning all five
-years. If the annual files make use of the same record variable, then
-'ncrcat' will do the job nicely with, e.g., 'ncrcat 8?.nc 8589.nc'. The
-number of records in the input files is arbitrary and can vary from file
-to file. *Note ncrcat netCDF Record Concatenator::, for a complete
-description of 'ncrcat'.
-
- However, suppose the annual files have no record variable, and thus
-their data are all fixed length. For example, the files may not be
-conceptually sequential, but rather members of the same group, or
-"ensemble". Members of an ensemble may have no reason to contain a
-record dimension. 'ncecat' will create a new record dimension (named
-RECORD by default) with which to glue together the individual files into
-the single ensemble file. If 'ncecat' is used on files which contain an
-existing record dimension, that record dimension is converted to a
-fixed-length dimension of the same name and a new record dimension
-(named 'record') is created. Consider five realizations, '85a.nc',
-'85b.nc', ... '85e.nc' of 1985 predictions from the same climate model.
-Then 'ncecat 85?.nc 85_ens.nc' glues together the individual
-realizations into the single file, '85_ens.nc'. If an input variable
-was dimensioned ['lat','lon'], it will have dimensions
-['record','lat','lon'] in the output file. A restriction of 'ncecat' is
-that the hyperslabs of the processed variables must be the same from
-file to file. Normally this means all the input files are the same
-size, and contain data on different realizations of the same variables.
-*Note ncecat netCDF Ensemble Concatenator::, for a complete description
-of 'ncecat'.
-
- 'ncpdq' makes it possible to concatenate files along any dimension,
-not just the record dimension. First, use 'ncpdq' to convert the
-dimension to be concatenated (i.e., extended with data from other files)
-into the record dimension. Second, use 'ncrcat' to concatenate these
-files. Finally, if desirable, use 'ncpdq' to revert to the original
-dimensionality. As a concrete example, say that files 'x_01.nc',
-'x_02.nc', ... 'x_10.nc' contain time-evolving datasets from spatially
-adjacent regions. The time and spatial coordinates are 'time' and 'x',
-respectively. Initially the record dimension is 'time'. Our goal is to
-create a single file that contains joins all the spatially adjacent
-regions into one single time-evolving dataset.
- for idx in 01 02 03 04 05 06 07 08 09 10; do # Bourne Shell
- ncpdq -a x,time x_${idx}.nc foo_${idx}.nc # Make x record dimension
- done
- ncrcat foo_??.nc out.nc # Concatenate along x
- ncpdq -a time,x out.nc out.nc # Revert to time as record dimension
-
- Note that 'ncrcat' will not concatenate fixed-length variables,
-whereas 'ncecat' concatenates both fixed-length and record variables
-along a new record variable. To conserve system memory, use 'ncrcat'
-where possible.
-
-2.6.2 Averagers 'nces', 'ncra', and 'ncwa'
-------------------------------------------
-
-The differences between the averagers 'ncra' and 'nces' are analogous to
-the differences between the concatenators. 'ncra' is designed for
-averaging record variables from at least one file, while 'nces' is
-designed for averaging fixed length variables from multiple files.
-'ncra' performs a simple arithmetic average over the record dimension of
-all the input files, with each record having an equal weight in the
-average. 'nces' performs a simple arithmetic average of all the input
-files, with each file having an equal weight in the average. Note that
-'ncra' cannot average fixed-length variables, but 'nces' can average
-both fixed-length and record variables. To conserve system memory, use
-'ncra' rather than 'nces' where possible (e.g., if each INPUT-FILE is
-one record long). The file output from 'nces' will have the same
-dimensions (meaning dimension names as well as sizes) as the input
-hyperslabs (*note nces netCDF Ensemble Statistics::, for a complete
-description of 'nces'). The file output from 'ncra' will have the same
-dimensions as the input hyperslabs except for the record dimension,
-which will have a size of 1 (*note ncra netCDF Record Averager::, for a
-complete description of 'ncra').
-
-2.6.3 Interpolator 'ncflint'
-----------------------------
-
-'ncflint' can interpolate data between or two files. Since no other
-operators have this ability, the description of interpolation is given
-fully on the 'ncflint' reference page (*note ncflint netCDF File
-Interpolator::). Note that this capability also allows 'ncflint' to
-linearly rescale any data in a netCDF file, e.g., to convert between
-differing units.
-
-2.7 Large Numbers of Files
-==========================
-
-Occasionally one desires to digest (i.e., concatenate or average)
-hundreds or thousands of input files. Unfortunately, data archives
-(e.g., NASA EOSDIS) may not name netCDF files in a format understood by
-the '-n LOOP' switch (*note Specifying Input Files::) that automagically
-generates arbitrary numbers of input filenames. The '-n LOOP' switch
-has the virtue of being concise, and of minimizing the command line.
-This helps keeps output file small since the command line is stored as
-metadata in the 'history' attribute (*note History Attribute::).
-However, the '-n LOOP' switch is useless when there is no simple,
-arithmetic pattern to the input filenames (e.g., 'h00001.nc',
-'h00002.nc', ... 'h90210.nc'). Moreover, filename globbing does not
-work when the input files are too numerous or their names are too
-lengthy (when strung together as a single argument) to be passed by the
-calling shell to the NCO operator (1). When this occurs, the ANSI
-C-standard 'argc'-'argv' method of passing arguments from the calling
-shell to a C-program (i.e., an NCO operator) breaks down. There are (at
-least) three alternative methods of specifying the input filenames to
-NCO in environment-limited situations.
-
- The recommended method for sending very large numbers (hundreds or
-more, typically) of input filenames to the multi-file operators is to
-pass the filenames with the UNIX "standard input" feature, aka 'stdin':
- # Pipe large numbers of filenames to stdin
- /bin/ls | grep ${CASEID}_'......'.nc | ncecat -o foo.nc
- This method avoids all constraints on command line size imposed by
-the operating system. A drawback to this method is that the 'history'
-attribute (*note History Attribute::) does not record the name of any
-input files since the names were not passed on the command line. This
-makes determining the data provenance at a later date difficult. To
-remedy this situation, multi-file operators store the number of input
-files in the 'nco_input_file_number' global attribute and the input file
-list itself in the 'nco_input_file_list' global attribute (*note File
-List Attributes::). Although this does not preserve the exact command
-used to generate the file, it does retains all the information required
-to reconstruct the command and determine the data provenance.
-
- A second option is to use the UNIX 'xargs' command. This simple
-example selects as input to 'xargs' all the filenames in the current
-directory that match a given pattern. For illustration, consider a user
-trying to average millions of files which each have a six character
-filename. If the shell buffer cannot hold the results of the
-corresponding globbing operator, '??????.nc', then the filename globbing
-technique will fail. Instead we express the filename pattern as an
-extended regular expression, '......\.nc' (*note Subsetting Files::).
-We use 'grep' to filter the directory listing for this pattern and to
-pipe the results to 'xargs' which, in turn, passes the matching
-filenames to an NCO multi-file operator, e.g., 'ncecat'.
- # Use xargs to transfer filenames on the command line
- /bin/ls | grep ${CASEID}_'......'.nc | xargs -x ncecat -o foo.nc
- The single quotes protect the only sensitive parts of the extended
-regular expression (the 'grep' argument), and allow shell interpolation
-(the '${CASEID}' variable substitution) to proceed unhindered on the
-rest of the command. 'xargs' uses the UNIX pipe feature to append the
-suitably filtered input file list to the end of the 'ncecat' command
-options. The '-o foo.nc' switch ensures that the input files supplied
-by 'xargs' are not confused with the output file name. 'xargs' does,
-unfortunately, have its own limit (usually about 20,000 characters) on
-the size of command lines it can pass. Give 'xargs' the '-x' switch to
-ensure it dies if it reaches this internal limit. When this occurs, use
-either the 'stdin' method above, or the symbolic link presented next.
-
- Even when its internal limits have not been reached, the 'xargs'
-technique may not be sophisticated enough to handle all situations. A
-full scripting language like Perl can handle any level of complexity of
-filtering input filenames, and any number of filenames. The technique
-of last resort is to write a script that creates symbolic links between
-the irregular input filenames and a set of regular, arithmetic filenames
-that the '-n LOOP' switch understands. For example, the following Perl
-script creates a monotonically enumerated symbolic link to up to one
-million '.nc' files in a directory. If there are 999,999 netCDF files
-present, the links are named '000001.nc' to '999999.nc':
- # Create enumerated symbolic links
- /bin/ls | grep \.nc | perl -e \
- '$idx=1;while(<STDIN>){chop;symlink $_,sprintf("%06d.nc",$idx++);}'
- ncecat -n 999999,6,1 000001.nc foo.nc
- # Remove symbolic links when finished
- /bin/rm ??????.nc
- The '-n LOOP' option tells the NCO operator to automatically generate
-the filnames of the symbolic links. This circumvents any OS and shell
-limits on command line size. The symbolic links are easily removed once
-NCO is finished. One drawback to this method is that the 'history'
-attribute (*note History Attribute::) retains the filename list of the
-symbolic links, rather than the data files themselves. This makes it
-difficult to determine the data provenance at a later date.
-
- ---------- Footnotes ----------
-
- (1) The exact length which exceeds the operating system internal
-limit for command line lengths varies from OS to OS and from shell to
-shell. GNU 'bash' may not have any arbitrary fixed limits to the size
-of command line arguments. Many OSs cannot handle command line
-arguments (including results of file globbing) exceeding 4096
-characters.
-
-2.8 Large Datasets
-==================
-
-"Large datasets" are those files that are comparable in size to the
-amount of random access memory (RAM) in your computer. Many users of
-NCO work with files larger than 100 MB. Files this large not only push
-the current edge of storage technology, they present special problems
-for programs which attempt to access the entire file at once, such as
-'nces' and 'ncecat'. If you work with a 300 MB files on a machine with
-only 32 MB of memory then you will need large amounts of swap space
-(virtual memory on disk) and NCO will work slowly, or even fail. There
-is no easy solution for this. The best strategy is to work on a machine
-with sufficient amounts of memory and swap space. Since about 2004,
-many users have begun to produce or analyze files exceeding 2 GB in
-size. These users should familiarize themselves with NCO's Large File
-Support (LFS) capabilities (*note Large File Support::). The next
-section will increase your familiarity with NCO's memory requirements.
-With this knowledge you may re-design your data reduction approach to
-divide the problem into pieces solvable in memory-limited situations.
-
- If your local machine has problems working with large files, try
-running NCO from a more powerful machine, such as a network server. If
-you get a memory-related core dump (e.g., 'Error exit (core dumped)') on
-a GNU/Linux system, or the operation ends before the entire output file
-is written, try increasing the process-available memory with 'ulimit':
- ulimit -f unlimited
- This may solve constraints on clusters where sufficient hardware
-resources exist yet where system administrators felt it wise to prevent
-any individual user from consuming too much of resource. Certain
-machine architectures, e.g., Cray UNICOS, have special commands which
-allow one to increase the amount of interactive memory. On Cray
-systems, try to increase the available memory with the 'ilimit' command.
-
- The speed of the NCO operators also depends on file size. When
-processing large files the operators may appear to hang, or do nothing,
-for large periods of time. In order to see what the operator is
-actually doing, it is useful to activate a more verbose output mode.
-This is accomplished by supplying a number greater than 0 to the '-D
-DEBUG-LEVEL' (or '--debug-level', or '--dbg_lvl') switch. When the
-DEBUG-LEVEL is nonzero, the operators report their current status to the
-terminal through the STDERR facility. Using '-D' does not slow the
-operators down. Choose a DEBUG-LEVEL between 1 and 3 for most
-situations, e.g., 'nces -D 2 85.nc 86.nc 8586.nc'. A full description
-of how to estimate the actual amount of memory the multi-file NCO
-operators consume is given in *note Memory Requirements::.
-
-2.9 Memory Requirements
-=======================
-
-Many people use NCO on gargantuan files which dwarf the memory available
-(free RAM plus swap space) even on today's powerful machines. These
-users want NCO to consume the least memory possible so that their
-scripts do not have to tediously cut files into smaller pieces that fit
-into memory. We commend these greedy users for pushing NCO to its
-limits!
-
- This section describes the memory NCO requires during operation. The
-required memory is based on the underlying algorithms. The description
-below is the memory usage per thread. Users with shared memory machines
-may use the threaded NCO operators (*note OpenMP Threading::). The peak
-and sustained memory usage will scale accordingly, i.e., by the number
-of threads. Memory consumption patterns of all operators are similar,
-with the exception of 'ncap2'.
-
-2.9.1 Single and Multi-file Operators
--------------------------------------
-
-The multi-file operators currently comprise the record operators, 'ncra'
-and 'ncrcat', and the ensemble operators, 'nces' and 'ncecat'. The
-record operators require _much less_ memory than the ensemble operators.
-This is because the record operators operate on one single record (i.e.,
-time-slice) at a time, whereas the ensemble operators retrieve the
-entire variable into memory. Let MS be the peak sustained memory demand
-of an operator, FT be the memory required to store the entire contents
-of all the variables to be processed in an input file, FR be the memory
-required to store the entire contents of a single record of each of the
-variables to be processed in an input file, VR be the memory required to
-store a single record of the largest record variable to be processed in
-an input file, VT be the memory required to store the largest variable
-to be processed in an input file, VI be the memory required to store the
-largest variable which is not processed, but is copied from the initial
-file to the output file. All operators require MI = VI during the
-initial copying of variables from the first input file to the output
-file. This is the _initial_ (and transient) memory demand. The
-_sustained_ memory demand is that memory required by the operators
-during the processing (i.e., averaging, concatenation) phase which lasts
-until all the input files have been processed. The operators have the
-following memory requirements: 'ncrcat' requires MS <= VR. 'ncecat'
-requires MS <= VT. 'ncra' requires MS = 2FR + VR. 'nces' requires MS =
-2FT + VT. 'ncbo' requires MS <= 3VT (both input variables and the
-output variable). 'ncflint' requires MS <= 3VT (both input variables
-and the output variable). 'ncpdq' requires MS <= 2VT (one input
-variable and the output variable). 'ncwa' requires MS <= 8VT (see
-below). Note that only variables that are processed, e.g., averaged,
-concatenated, or differenced, contribute to MS. Variables which do not
-appear in the output file (*note Subsetting Files::) are never read and
-contribute nothing to the memory requirements.
-
- Further note that some operators perform internal type-promotion on
-some variables prior to arithmetic (*note Type Conversion::). For
-example, 'ncra' and 'nces' both promote integer types to
-double-precision floating point prior to arithmetic, then perform the
-arithmetic, then demote back to the original integer type after
-arithmetic. This preserves the on-disk storage type while obtaining the
-accuracy advantages of floating point arithmetic. Since version 4.3.6
-(released in September, 2013), NCO also by default converts
-single-precision floating point to double-precision prior to arithmetic,
-which incurs the same RAM penalty. Hence, the sustained memory required
-for integer variables and single-precision floats are two or four-times
-their on-disk, uncompressed, unpacked sizes if they meet the rules for
-automatic internal promotion. Put another way, disabling auto-promotion
-of single-precision variables (with '--flt') considerably reduces the
-RAM footprint of arithmetic operators.
-
- The '--open_ram' switch (and switches that invoke it like '--ram_all'
-and '--diskless_all') incurs a RAM penalty. These switches cause each
-input file to be copied to RAM upon opening. Hence any operator
-invoking these switches utilizes an additional FT of RAM (i.e., MS +=
-FT). See *note RAM disks:: for further details.
-
- 'ncwa' consumes between two and seven times the memory of a variable
-in order to process it. Peak consumption occurs when storing
-simultaneously in memory one input variable, one tally array, one input
-weight, one conformed/working weight, one weight tally, one input mask,
-one conformed/working mask, and one output variable. When invoked, the
-weighting and masking features contribute up to three-sevenths and
-two-sevenths of these requirements apiece. If weights and masks are
-_not_ specified (i.e., no '-w' or '-a' options) then 'ncwa' requirements
-drop to MS <= 3VT (one input variable, one tally array, and the output
-variable).
-
- The above memory requirements must be multiplied by the number of
-threads THR_NBR (*note OpenMP Threading::). If this causes problems
-then reduce (with '-t THR_NBR') the number of threads.
-
-2.9.2 Memory for 'ncap2'
-------------------------
-
-'ncap2' has unique memory requirements due its ability to process
-arbitrarily long scripts of any complexity. All scripts acceptable to
-'ncap2' are ultimately processed as a sequence of binary or unary
-operations. 'ncap2' requires MS <= 2VT under most conditions. An
-exception to this is when left hand casting (*note Left hand casting::)
-is used to stretch the size of derived variables beyond the size of any
-input variables. Let VC be the memory required to store the largest
-variable defined by left hand casting. In this case, MS <= 2VC.
-
- 'ncap2' scripts are complete dynamic and may be of arbitrary length.
-A script that contains many thousands of operations, may uncover a slow
-memory leak even though each single operation consumes little additional
-memory. Memory leaks are usually identifiable by their memory usage
-signature. Leaks cause peak memory usage to increase monotonically with
-time regardless of script complexity. Slow leaks are very difficult to
-find. Sometimes a 'malloc()' (or 'new[]') failure is the only
-noticeable clue to their existance. If you have good reasons to believe
-that a memory allocation failure is ultimately due to an NCO memory leak
-(rather than inadequate RAM on your system), then we would be very
-interested in receiving a detailed bug report.
-
-2.10 Performance
-================
-
-An overview of NCO capabilities as of about 2006 is in Zender, C. S.
-(2008), "Analysis of Self-describing Gridded Geoscience Data with netCDF
-Operators (NCO)", Environ. Modell. Softw.,
-doi:10.1016/j.envsoft.2008.03.004. This paper is also available at
-<http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf>.
-
- NCO performance and scaling for arithmetic operations is described in
-Zender, C. S., and H. J. Mangalam (2007), "Scaling Properties of Common
-Statistical Operators for Gridded Datasets", Int. J. High Perform.
-Comput. Appl., 21(4), 485-498, doi:10.1177/1094342007083802. This
-paper is also available at <http://dust.ess.uci.edu/ppr/ppr_ZeM07.pdf>.
-
- It is helpful to be aware of the aspects of NCO design that can limit
-its performance:
- 1. No data buffering is performed during 'nc_get_var' and 'nc_put_var'
- operations. Hyperslabs too large too hold in core memory will
- suffer substantial performance penalties because of this.
-
- 2. Since coordinate variables are assumed to be monotonic, the search
- for bracketing the user-specified limits should employ a quicker
- algorithm, like bisection, than the two-sided incremental search
- currently implemented.
-
- 3. C_FORMAT, FORTRAN_FORMAT, SIGNEDNESS, SCALE_FORMAT and ADD_OFFSET
- attributes are ignored by 'ncks' when printing variables to screen.
-
- 4. In the late 1990s it was discovered that some random access
- operations on large files on certain architectures (e.g., UNICOS)
- were much slower with NCO than with similar operations performed
- using languages that bypass the netCDF interface (e.g., Yorick).
- This may have been a penalty of unnecessary byte-swapping in the
- netCDF interface. It is unclear whether such problems exist in
- present day (2007) netCDF/NCO environments, where unnecessary
- byte-swapping has been reduced or eliminated.
-
-3 Shared Features
-*****************
-
-Many features have been implemented in more than one operator and are
-described here for brevity. The description of each feature is preceded
-by a box listing the operators for which the feature is implemented.
-Command line switches for a given feature are consistent across all
-operators wherever possible. If no "key switches" are listed for a
-feature, then that particular feature is automatic and cannot be
-controlled by the user.
-
-3.1 Internationalization
-========================
-
-Availability: All operators
- NCO support for "internationalization" of textual input and output
-(e.g., Warning messages) is nascent. We introduced the first foreign
-language string catalogues (French and Spanish) in 2004, yet did not
-activate these in distributions because the catalogues were nearly
-empty. We seek volunteers to populate our templates with translations
-for their favorite languages.
-
-3.2 Metadata Optimization
-=========================
-
-Availability: All operators
-Short options: None
-Long options: '--hdr_pad', '--header_pad'
- NCO supports padding headers to improve the speed of future metadata
-operations. Use the '--hdr_pad' and '--header_pad' switches to request
-that HDR_PAD bytes be inserted into the metadata section of the output
-file. Future metadata expansions will not incur the netCDF3 performance
-penalty of copying the entire output file unless the expansion exceeds
-the amount of header padding exceeded. This can be beneficial when it
-is known that some metadata will be added at a future date. The
-operators which benefit most from judicious use of header padding are
-'ncatted' and 'ncrename', since they only alter metadata.
-
- This optimization exploits the netCDF library 'nc__enddef()'
-function, which behaves differently with different versions of netCDF.
-It will improve speed of future metadata expansion with 'CLASSIC' and
-'64bit' netCDF files, though not necessarily with 'NETCDF4' files, i.e.,
-those created by the netCDF interface to the HDF5 library (*note File
-Formats and Conversion::).
-
-3.3 OpenMP Threading
-====================
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-t'
-Long options: '--thr_nbr', '--threads', '--omp_num_threads'
- NCO supports shared memory parallelism (SMP) when compiled with an
-OpenMP-enabled compiler. Threads requests and allocations occur in two
-stages. First, users may request a specific number of threads THR_NBR
-with the '-t' switch (or its long option equivalents, '--thr_nbr',
-'--threads', and '--omp_num_threads'). If not user-specified, OpenMP
-obtains THR_NBR from the 'OMP_NUM_THREADS' environment variable, if
-present, or from the OS, if not.
-
- Caveat: Unfortunately, threading does not improve NCO throughput
-(i.e., wallclock time) because nearly all NCO operations are I/O-bound.
-This means that NCO spends negligible time doing anything compared to
-reading and writing. We have seen some and can imagine other use cases
-where 'ncwa', 'ncpdq', and 'ncap2' (with long scripts) will complete
-faster due to threading. The main benefits of threading so far have
-been to isolate the serial from parallel portions of code. This
-parallelism is now exploited by OpenMP but then runs into the I/O
-bottleneck during output. The bottleneck will be ameliorated for large
-files by the use of MPI-enabled calls in the netCDF4 library when the
-underlying filesystem is parallel (e.g., PVFS or JFS). Implementation
-of the parallel output calls in NCO is not a goal of our current funding
-and would require new volunteers or funding.
-
- NCO may modify THR_NBR according to its own internal settings before
-it requests any threads from the system. Certain operators contain
-hard-code limits to the number of threads they request. We base these
-limits on our experience and common sense, and to reduce potentially
-wasteful system usage by inexperienced users. For example, 'ncrcat' is
-extremely I/O-intensive so we restrict THR_NBR <= 2 for 'ncrcat'. This
-is based on the notion that the best performance that can be expected
-from an operator which does no arithmetic is to have one thread reading
-and one thread writing simultaneously. In the future (perhaps with
-netCDF4), we hope to demonstrate significant threading improvements with
-operators like 'ncrcat' by performing multiple simultaneous writes.
-
- Compute-intensive operators ('ncap2', 'ncwa' and 'ncpdq') benefit
-most from threading. The greatest increases in throughput due to
-threading occur on large datasets where each thread performs millions,
-at least, of floating point operations. Otherwise, the system overhead
-of setting up threads probably outweighs the speed enhancements due to
-SMP parallelism. However, we have not yet demonstrated that the SMP
-parallelism scales beyond four threads for these operators. Hence we
-restrict THR_NBR <= 4 for all operators. We encourage users to play
-with these limits (edit file 'nco_omp.c') and send us their feedback.
-
- Once the initial THR_NBR has been modified for any operator-specific
-limits, NCO requests the system to allocate a team of THR_NBR threads
-for the body of the code. The operating system then decides how many
-threads to allocate based on this request. Users may keep track of this
-information by running the operator with DBG_LVL > 0.
-
- By default, threaded operators attach one global attribute,
-'nco_openmp_thread_number', to any file they create or modify. This
-attribute contains the number of threads the operator used to process
-the input files. This information helps to verify that the answers with
-threaded and non-threaded operators are equal to within machine
-precision. This information is also useful for benchmarking.
-
-3.4 Command Line Options
-========================
-
-Availability: All operators
- NCO achieves flexibility by using "command line options". These
-options are implemented in all traditional UNIX commands as single
-letter "switches", e.g., 'ls -l'. For many years NCO used only single
-letter option names. In late 2002, we implemented GNU/POSIX extended or
-long option names for all options. This was done in a backward
-compatible way such that the full functionality of NCO is still
-available through the familiar single letter options. In the future,
-however, some features of NCO may require the use of long options,
-simply because we have nearly run out of single letter options. More
-importantly, mnemonics for single letter options are often non-intuitive
-so that long options provide a more natural way of expressing intent.
-
- Extended options, also called long options, are implemented using the
-system-supplied 'getopt.h' header file, if possible. This provides the
-'getopt_long' function to NCO (1).
-
- The syntax of "short options" (single letter options) is '-KEY VALUE'
-(dash-key-space-value). Here, KEY is the single letter option name,
-e.g., '-D 2'.
-
- The syntax of "long options" (multi-letter options) is '--LONG_NAME
-VALUE' (dash-dash-key-space-value), e.g., '--dbg_lvl 2' or
-'--LONG_NAME=VALUE' (dash-dash-key-equal-value), e.g., '--dbg_lvl=2'.
-Thus the following are all valid for the '-D' (short version) or
-'--dbg_lvl' (long version) command line option.
- ncks -D 3 in.nc # Short option
- ncks --dbg_lvl=3 in.nc # Long option, preferred form
- ncks --dbg_lvl 3 in.nc # Long option, alternate form
-The last example is preferred for two reasons. First, '--dbg_lvl' is
-more specific and less ambiguous than '-D'. The long option form makes
-scripts more self documenting and less error prone. Often long options
-are named after the source code variable whose value they carry.
-Second, the equals sign '=' joins the key (i.e., LONG_NAME) to the value
-in an uninterruptible text block. Experience shows that users are less
-likely to mis-parse commands when restricted to this form.
-
- GNU implements a superset of the POSIX standard which allows any
-unambiguous truncation of a valid option to be used.
- ncks -D 3 in.nc # Short option
- ncks --dbg_lvl=3 in.nc # Long option, full form
- ncks --dbg=3 in.nc # Long option, unambiguous truncation
- ncks --db=3 in.nc # Long option, unambiguous truncation
- ncks --d=3 in.nc # Long option, ambiguous truncation
-The first four examples are equivalent and will work as expected. The
-final example will exit with an error since 'ncks' cannot disambiguate
-whether '--d' is intended as a truncation of '--dbg_lvl', of
-'--dimension', or of some other long option.
-
- NCO provides many long options for common switches. For example, the
-debugging level may be set in all operators with any of the switches
-'-D', '--debug-level', or '--dbg_lvl'. This flexibility allows users to
-choose their favorite mnemonic. For some, it will be '--debug' (an
-unambiguous truncation of '--debug-level', and other will prefer
-'--dbg'. Interactive users usually prefer the minimal amount of typing,
-i.e., '-D'. We recommend that scripts which are re-usable employ some
-form of the long options for future maintainability.
-
- This manual generally uses the short option syntax in examples. This
-is for historical reasons and to conserve space in printed output.
-Users are expected to pick the unambiguous truncation of each option
-name that most suits their taste.
-
- ---------- Footnotes ----------
-
- (1) If a 'getopt_long' function cannot be found on the system, NCO
-will use the 'getopt_long' from the 'my_getopt' package by Benjamin
-Sittler <bsittler at iname.com>. This is BSD-licensed software available
-from <http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt>.
-
-3.5 Specifying Input Files
-==========================
-
-Availability ('-n'): 'nces', 'ncecat', 'ncra', 'ncrcat'
-Availability ('-p'): All operators
-Short options: '-n', '-p'
-Long options: '--nintap', '--pth', '--path'
- It is important that users be able to specify multiple input files
-without typing every filename in full, often a tedious task even by
-graduate student standards. There are four different ways of specifying
-input files to NCO: explicitly typing each, using UNIX shell wildcards,
-and using the NCO '-n' and '-p' switches (or their long option
-equivalents, '--nintap' or '--pth' and '--path', respectively).
-Techniques to augment these methods to specify arbitrary numbers (e.g.,
-thousands) and patterns of filenames are discussed separately (*note
-Large Numbers of Files::).
-
- To illustrate these methods, consider the simple problem of using
-'ncra' to average five input files, '85.nc', '86.nc', ... '89.nc', and
-store the results in '8589.nc'. Here are the four methods in order.
-They produce identical answers.
- ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
- ncra 8[56789].nc 8589.nc
- ncra -p INPUT-PATH 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
- ncra -n 5,2,1 85.nc 8589.nc
- The first method (explicitly specifying all filenames) works by brute
-force. The second method relies on the operating system shell to "glob"
-(expand) the "regular expression" '8[56789].nc'. The shell then passes
-the valid filenames (those which match the regular expansion) to 'ncra'.
-In this case 'ncra' never knows that a regular expression was used,
-because the shell intercepts and expands and matches the regular
-expression before 'ncra' is actually invoked. The third method uses the
-'-p INPUT-PATH' argument to specify the directory where all the input
-files reside. NCO prepends INPUT-PATH (e.g., '/data/username/model') to
-all INPUT-FILES (though not to OUTPUT-FILE). Thus, using '-p', the path
-to any number of input files need only be specified once. Note
-INPUT-PATH need not end with '/'; the '/' is automatically generated if
-necessary.
-
- The last method passes (with '-n') syntax concisely describing the
-entire set of filenames (1). This option is only available with the
-"multi-file operators": 'ncra', 'ncrcat', 'nces', and 'ncecat'. By
-definition, multi-file operators are able to process an arbitrary number
-of INPUT-FILES. This option is very useful for abbreviating lists of
-filenames representable as
-ALPHANUMERIC_PREFIX+NUMERIC_SUFFIX+'.'+FILETYPE where
-ALPHANUMERIC_PREFIX is a string of arbitrary length and composition,
-NUMERIC_SUFFIX is a fixed width field of digits, and FILETYPE is a
-standard filetype indicator. For example, in the file 'ccm3_h0001.nc',
-we have ALPHANUMERIC_PREFIX = 'ccm3_h', NUMERIC_SUFFIX = '0001', and
-FILETYPE = 'nc'.
-
- NCO decodes lists of such filenames encoded using the '-n' syntax.
-The simpler (3-argument) '-n' usage takes the form '-n
-FILE_NUMBER,DIGIT_NUMBER,NUMERIC_INCREMENT' where FILE_NUMBER is the
-number of files, DIGIT_NUMBER is the fixed number of numeric digits
-comprising the NUMERIC_SUFFIX, and NUMERIC_INCREMENT is the constant,
-integer-valued difference between the NUMERIC_SUFFIX of any two
-consecutive files. The value of ALPHANUMERIC_PREFIX is taken from the
-input file, which serves as a template for decoding the filenames. In
-the example above, the encoding '-n 5,2,1' along with the input file
-name '85.nc' tells NCO to construct five (5) filenames identical to the
-template '85.nc' except that the final two (2) digits are a numeric
-suffix to be incremented by one (1) for each successive file. Currently
-FILETYPE may be either be empty, 'nc', 'cdf', 'hdf', or 'hd5'. If
-present, these FILETYPE suffixes (and the preceding '.') are ignored by
-NCO as it uses the '-n' arguments to locate, evaluate, and compute the
-NUMERIC_SUFFIX component of filenames.
-
- Recently the '-n' option has been extended to allow convenient
-specification of filenames with "circular" characteristics. This means
-it is now possible for NCO to automatically generate filenames which
-increment regularly until a specified maximum value, and then wrap back
-to begin again at a specified minimum value. The corresponding '-n'
-usage becomes more complex, taking one or two additional arguments for a
-total of four or five, respectively: '-n
-FILE_NUMBER,DIGIT_NUMBER,NUMERIC_INCREMENT[,NUMERIC_MAX[,NUMERIC_MIN]]'
-where NUMERIC_MAX, if present, is the maximum integer-value of
-NUMERIC_SUFFIX and NUMERIC_MIN, if present, is the minimum integer-value
-of NUMERIC_SUFFIX. Consider, for example, the problem of specifying
-non-consecutive input files where the filename suffixes end with the
-month index. In climate modeling it is common to create summertime and
-wintertime averages which contain the averages of the months
-June-July-August, and December-January-February, respectively:
- ncra -n 3,2,1 85_06.nc 85_0608.nc
- ncra -n 3,2,1,12 85_12.nc 85_1202.nc
- ncra -n 3,2,1,12,1 85_12.nc 85_1202.nc
- The first example shows that three arguments to the '-n' option
-suffice to specify consecutive months ('06, 07, 08') which do not "wrap"
-back to a minimum value. The second example shows how to use the
-optional fourth and fifth elements of the '-n' option to specify a wrap
-value. The fourth argument to '-n', when present, specifies the maximum
-integer value of NUMERIC_SUFFIX. In the example the maximum value is 12,
-and will be formatted as '12' in the filename string. The fifth
-argument to '-n', when present, specifies the minimum integer value of
-NUMERIC_SUFFIX. The default minimum filename suffix is 1, which is
-formatted as '01' in this case. Thus the second and third examples have
-the same effect, that is, they automatically generate, in order, the
-filenames '85_12.nc', '85_01.nc', and '85_02.nc' as input to NCO.
-
- ---------- Footnotes ----------
-
- (1) The '-n' option is a backward-compatible superset of the 'NINTAP'
-option from the NCAR CCM Processor. The CCM Processor was
-custom-written Fortran code maintained for many years by Lawrence Buja
-at NCAR, and phased-out in the late 1990s. NCO stole some ideas, like
-'NINTAP'-functionality, from the CCM Processor capabilities.
-
-3.6 Specifying Output Files
-===========================
-
-Availability: All operators
-Short options: '-o'
-Long options: '--fl_out', '--output'
- NCO commands produce no more than one output file, FL_OUT.
-Traditionally, users specify FL_OUT as the final argument to the
-operator, following all input file names. This is the "positional
-argument" method of specifying input and ouput file names. The
-positional argument method works well in most applications. NCO also
-supports specifying FL_OUT using the command line switch argument
-method, '-o FL_OUT'.
-
- Specifying FL_OUT with a switch, rather than as a positional
-argument, allows FL_OUT to precede input files in the argument list.
-This is particularly useful with multi-file operators for three reasons.
-Multi-file operators may be invoked with hundreds (or more) filenames.
-Visual or automatic location of FL_OUT in such a list is difficult when
-the only syntactic distinction between input and output files is their
-position. Second, specification of a long list of input files may be
-difficult (*note Large Numbers of Files::). Making the input file list
-the final argument to an operator facilitates using 'xargs' for this
-purpose. Some alternatives to 'xargs' are heinous and undesirable.
-Finally, many users are more comfortable specifying output files with
-'-o FL_OUT' near the beginning of an argument list. Compilers and
-linkers are usually invoked this way.
-
- Users should specify FL_OUT using either (not both) method. If
-FL_OUT is specified twice (once with the switch and once as the last
-positional argument), then the positional argument takes precedence.
-
-3.7 Accessing Remote Files
-==========================
-
-Availability: All operators
-Short options: '-p', '-l'
-Long options: '--pth', '--path', '--lcl', '--local'
- All NCO operators can retrieve files from remote sites as well as
-from the local file system. A remote site can be an anonymous FTP
-server, a machine on which the user has 'rcp', 'scp', or 'sftp'
-privileges, NCAR's Mass Storage System (MSS), or an OPeNDAP server.
-Examples of each are given below, following a brief description of the
-particular access protocol.
-
- To access a file via an anonymous FTP server, simply supply the
-remote file's URL. Anonymous FTP usually requires no further
-credentials, e.g., no '.netrc' file is necessary. FTP is an
-intrinsically insecure protocol because it transfers passwords in plain
-text format. Users should access sites using anonymous FTP, or better
-yet, secure FTP (SFTP, see below) when possible. Some FTP servers
-require a login/password combination for a valid user account. NCO
-allows transactions that require additional credentials so long as the
-required information is stored in the '.netrc' file. Usually this
-information is the remote machine name, login, and password, in plain
-text, separated by those very keywords, e.g.,
- machine dust.ess.uci.edu login zender password bushlied
- Eschew using valuable passwords for FTP transactions, since '.netrc'
-passwords are potentially exposed to eavesdropping software (1).
-
- SFTP, i.e., secure FTP, uses SSH-based security protocols that solve
-the security issues associated with plain FTP. NCO supports SFTP
-protocol access to files specified with a homebrew syntax of the form
- sftp://machine.domain.tld:/path/to/filename
- Note the second colon following the top-level-domain, 'tld'. This
-syntax is a hybrid between an FTP URL and standard remote file syntax.
-
- To access a file using 'rcp' or 'scp', specify the Internet address
-of the remote file. Of course in this case you must have 'rcp' or 'scp'
-privileges which allow transparent (no password entry required) access
-to the remote machine. This means that '~/.rhosts' or
-'~/ssh/authorized_keys' must be set accordingly on both local and remote
-machines.
-
- To access a file on a High Performance Storage System (HPSS) (such as
-that at NCAR, ECMWF, LANL, DKRZ, LLNL) specify the full HPSS pathname of
-the remote file. NCO will attempt to detect whether the local machine
-has direct (synchronous) HPSS access. In this case, NCO attempts to use
-the Hierarchical Storage Interface (HSI) command 'hsi get' (2).
-
- The following examples show how one might analyze files stored on
-remote systems.
- ncks -l . ftp://dust.ess.uci.edu/pub/zender/nco/in.nc
- ncks -l . sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco/in.nc
- ncks -l . dust.ess.uci.edu:/home/zender/nco/data/in.nc
- ncks -l . /ZENDER/nco/in.nc
- ncks -l . /home/zender/nco/in.nc
- ncks -l . http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
-The first example works verbatim if your system is connected to the
-Internet and is not behind a firewall. The second example works if you
-have 'sftp' access to the machine 'dust.ess.uci.edu'. The third example
-works if you have 'rcp' or 'scp' access to the machine
-'dust.ess.uci.edu'. The fourth and fifth examples work on NCAR
-computers with local access to the HPSS 'hsi get' command (3). The
-sixth command works if your local version of NCO is OPeNDAP-enabled
-(this is fully described in *note OPeNDAP::), or if the remote file is
-accessible via 'wget'. The above commands can be rewritten using the
-'-p INPUT-PATH' option as follows:
- ncks -p ftp://dust.ess.uci.edu/pub/zender/nco -l . in.nc
- ncks -p sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco -l . in.nc
- ncks -p dust.ess.uci.edu:/home/zender/nco -l . in.nc
- ncks -p /ZENDER/nco -l . in.nc
- ncks -p /home/zender/nco -l . in.nc # HPSS
- ncks -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l . in.nc
-Using '-p' is recommended because it clearly separates the INPUT-PATH
-from the filename itself, sometimes called the "stub". When INPUT-PATH
-is not explicitly specified using '-p', NCO internally generates an
-INPUT-PATH from the first input filename. The automatically generated
-INPUT-PATH is constructed by stripping the input filename of everything
-following the final '/' character (i.e., removing the stub). The '-l
-OUTPUT-PATH' option tells NCO where to store the remotely retrieved
-file. It has no effect on locally-retrieved files, or on the output
-file. Often the path to a remotely retrieved file is quite different
-than the path on the local machine where you would like to store the
-file. If '-l' is not specified then NCO internally generates an
-OUTPUT-PATH by simply setting OUTPUT-PATH equal to INPUT-PATH stripped
-of any machine names. If '-l' is not specified and the remote file
-resides on the NCAR HPSS system, then the leading character of
-INPUT-PATH, '/', is also stripped from OUTPUT-PATH. Specifying
-OUTPUT-PATH as '-l ./' tells NCO to store the remotely retrieved file
-and the output file in the current directory. Note that '-l .' is
-equivalent to '-l ./' though the latter is syntactically more clear.
-
- ---------- Footnotes ----------
-
- (1) NCO does not implement command line options to specify FTP logins
-and passwords because copying those data into the 'history' global
-attribute in the output file (done by default) poses an unacceptable
-security risk.
-
- (2) The 'hsi' command must be in the user's path in one of the
-following directories: '/usr/local/bin', '/opt/hpss/bin', or
-'/ncar/opt/hpss/hsi'. Tell us if the HPSS installation at your site
-places the 'hsi' command in a different location, and we will add that
-location to the list of acceptable paths to search for 'hsi'.
-
- (3) NCO supported the old NCAR Mass Storage System (MSS) until
-version 4.0.7 in April, 2011. NCO supported MSS-retrievals via a
-variety of mechanisms including the 'msread', 'msrcp', and 'nrnet'
-commands invoked either automatically or with sentinels like 'ncks -p
-mss:/ZENDER/nco -l . in.nc'. Once the MSS was decommissioned in March,
-2011, support for these retrieval mechanisms was replaced by support for
-HPSS in NCO.
-
-3.7.1 OPeNDAP
--------------
-
-The Distributed Oceanographic Data System (DODS) provides useful
-replacements for common data interface libraries like netCDF. The DODS
-versions of these libraries implement network transparent access to data
-via a client-server data access protocol that uses the HTTP protocol for
-communication. Although DODS-technology originated with oceanography
-data, it applyies to virtually all scientific data. In recognition of
-this, the data access protocol underlying DODS (which is what NCO cares
-about) has been renamed the Open-source Project for a Network Data
-Access Protocol, OPeNDAP. We use the terms DODS and OPeNDAP
-interchangeably, and often write OPeNDAP/DODS for now. In the future we
-will deprecate DODS in favor of DAP or OPeNDAP, as appropriate (1).
-
- NCO may be DAP-enabled by linking NCO to the OPeNDAP libraries. This
-is described in the OPeNDAP documentation and automagically implemented
-in NCO build mechanisms (2). The './configure' mechanism automatically
-enables NCO as OPeNDAP clients if it can find the required OPeNDAP
-libraries (3). in the usual locations. The '$DODS_ROOT' environment
-variable may be used to override the default OPeNDAP library location at
-NCO compile-time. Building NCO with 'bld/Makefile' and the command
-'make DODS=Y' adds the (non-intuitive) commands to link to the OPeNDAP
-libraries installed in the '$DODS_ROOT' directory. The file
-'doc/opendap.sh' contains a generic script intended to help users
-install OPeNDAP before building NCO. The documentation at the OPeNDAP
-Homepage (http://www.opendap.org) is voluminous. Check there and on the
-DODS mail lists
-(http://www.unidata.ucar.edu/packages/dods/home/mailLists/). to learn
-more about the extensive capabilities of OPeNDAP (4).
-
- Once NCO is DAP-enabled the operators are OPeNDAP clients. All
-OPeNDAP clients have network transparent access to any files controlled
-by a OPeNDAP server. Simply specify the input file path(s) in URL
-notation and all NCO operations may be performed on remote files made
-accessible by a OPeNDAP server. This command tests the basic
-functionality of OPeNDAP-enabled NCO clients:
- % ncks -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
- % ncks -H -v one ~/foo.nc
- one = 1
- The 'one = 1' outputs confirm (first) that 'ncks' correctly retrieved
-data via the OPeNDAP protocol and (second) that 'ncks' created a valid
-local copy of the subsetted remote file. With minor changes to the
-above command, netCDF4 can be used as both the input and output file
-format:
- % ncks -4 -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
- % ncks -H -v one ~/foo.nc
- one = 1
- And, of course, OPeNDAP-enabled NCO clients continue to support
-orthogonal features such as UDUnits (*note UDUnits Support::):
- % ncks -u -C -H -v wvl -d wvl,'0.4 micron','0.7 micron' \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
- % wvl[0]=5e-07 meter
-
- The next command is a more advanced example which demonstrates the
-real power of OPeNDAP-enabled NCO clients. The 'ncwa' client requests
-an equatorial hyperslab from remotely stored NCEP reanalyses data of the
-year 1969. The NOAA OPeNDAP server (hopefully!) serves these data.
-The local 'ncwa' client then computes and stores (locally) the regional
-mean surface pressure (in Pa).
- ncwa -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
- http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc ~/foo.nc
-All with one command! The data in this particular input file also
-happen to be packed (*note Methods and functions::), although this
-complication is transparent to the user since NCO automatically unpacks
-data before attempting arithmetic.
-
- NCO obtains remote files from the OPeNDAP server (e.g.,
-'www.cdc.noaa.gov') rather than the local machine. Input files are
-first copied to the local machine, then processed. The OPeNDAP server
-performs data access, hyperslabbing, and transfer to the local machine.
-This allows the I/O to appear to NCO as if the input files were local.
-The local machine performs all arithmetic operations. Only the
-hyperslabbed output data are transferred over the network (to the local
-machine) for the number-crunching to begin. The advantages of this are
-obvious if you are examining small parts of large files stored at remote
-locations.
-
- Natually there are many versions of OPeNDAP servers supplying data
-and bugs in the server can appear to be bugs in NCO. However, with very
-few exceptions (5) an NCO command that works on a local file must work
-across an OPeNDAP connection or else there is a bug in the server. This
-is because NCO does nothing special to handle files served by OPeNDAP,
-the whole process is (supposed to be) completely transparent to the
-client NCO software. Therefore it is often useful to try NCO commands
-on various OPeNDAP servers in order to isolate whether a problem may be
-due to a bug in the OPeNDAP server on a particular machine. For this
-purpose, one might try variations of the following commands that access
-files on public OPeNDAP servers:
- # Strided access to HDF5 file
- ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/opendap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5
- # Strided access to netCDF3 file
- ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u_velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtofs_glo_2ds_forecast_daily_prog ~/foo.nc
-These servers were operational at the time of writing, March 2014.
-Unfortunately, administrators often move or rename path directories.
-Recommendations for additional public OPeNDAP servers on which to test
-NCO are welcome.
-
- ---------- Footnotes ----------
-
- (1) DODS is being deprecated because it is ambiguous, referring both
-to a protocol and to a collection of (oceanography) data. It is
-superceded by two terms. DAP is the discipline-neutral Data Access
-Protocol at the heart of DODS. The National Virtual Ocean Data System
-(NVODS) refers to the collection of oceanography data and oceanographic
-extensions to DAP. In other words, NVODS is implemented with OPeNDAP.
-OPeNDAP is _also_ the open source project which maintains, develops, and
-promulgates the DAP standard. OPeNDAP and DAP really are
-interchangeable. Got it yet?
-
- (2) Automagic support for DODS version 3.2.x was deprecated in
-December, 2003 after NCO version 2.8.4. NCO support for OPeNDAP
-versions 3.4.x commenced in December, 2003, with NCO version 2.8.5. NCO
-support for OPeNDAP versions 3.5.x commenced in June, 2005, with NCO
-version 3.0.1. NCO support for OPeNDAP versions 3.6.x commenced in
-June, 2006, with NCO version 3.1.3. NCO support for OPeNDAP versions
-3.7.x commenced in January, 2007, with NCO version 3.1.9.
-
- (3) The minimal set of libraries required to build NCO as OPeNDAP
-clients, where OPeNDAP is supplied as a separate library apart from
-'libnetcdf.a', are, in link order, 'libnc-dap.a', 'libdap.a', and
-'libxml2' and 'libcurl.a'.
-
- (4) We are most familiar with the OPeNDAP ability to enable
-network-transparent data access. OPeNDAP has many other features,
-including sophisticated hyperslabbing and server-side processing via
-"constraint expressions". If you know more about this, please consider
-writing a section on "OPeNDAP Capabilities of Interest to NCO Users" for
-incorporation in the 'NCO User Guide'.
-
- (5) For example, DAP servers do not like variables with periods (".")
-in their names even though this is perfectly legal with netCDF. Such
-names may cause the DAP service to fail because DAP interprets the
-period as structure delimiter in an HTTP query string.
-
-3.8 Retaining Retrieved Files
-=============================
-
-Availability: All operators
-Short options: '-R'
-Long options: '--rtn', '--retain'
- In order to conserve local file system space, files retrieved from
-remote locations are automatically deleted from the local file system
-once they have been processed. Many NCO operators were constructed to
-work with numerous large (e.g., 200 MB) files. Retrieval of multiple
-files from remote locations is done serially. Each file is retrieved,
-processed, then deleted before the cycle repeats. In cases where it is
-useful to keep the remotely-retrieved files on the local file system
-after processing, the automatic removal feature may be disabled by
-specifying '-R' on the command line.
-
- Invoking '-R' disables the default printing behavior of 'ncks'. This
-allows 'ncks' to retrieve remote files without automatically trying to
-print them. See *note ncks netCDF Kitchen Sink::, for more details.
-
- Note that the remote retrieval features of NCO can always be used to
-retrieve _any_ file, including non-netCDF files, via 'SSH', anonymous
-FTP, or 'msrcp'. Often this method is quicker than using a browser, or
-running an FTP session from a shell window yourself. For example, say
-you want to obtain a JPEG file from a weather server.
- ncks -R -p ftp://weather.edu/pub/pix/jpeg -l . storm.jpg
-In this example, 'ncks' automatically performs an anonymous FTP login to
-the remote machine and retrieves the specified file. When 'ncks'
-attempts to read the local copy of 'storm.jpg' as a netCDF file, it
-fails and exits, leaving 'storm.jpg' in the current directory.
-
- If your NCO is DAP-enabled (*note OPeNDAP::), then you may use NCO to
-retrieve any files (including netCDF, HDF, etc.) served by an OPeNDAP
-server to your local machine. For example,
- ncks -R -l . -p \
- http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc
- It may occasionally be useful to use NCO to transfer files when your
-other preferred methods are not available locally.
-
-3.9 File Formats and Conversion
-===============================
-
-Availability: 'ncap2', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-3', '-4', '-6', '-7'
-Long options: '--3', '--4', '--6', '--64bit', '--7', '--fl_fmt',
-'--netcdf4'
- All NCO operators support (read and write) all three (or four,
-depending on how one counts) file formats supported by netCDF4. The
-default output file format for all operators is the input file format.
-The operators listed under "Availability" above allow the user to
-specify the output file format independent of the input file format.
-These operators allow the user to convert between the various file
-formats. (The operators 'ncatted' and 'ncrename' do not support these
-switches so they always write the output netCDF file in the same format
-as the input netCDF file.)
-
-3.9.1 File Formats
-------------------
-
-netCDF supports four types of files: 'CLASSIC', '64BIT', 'NETCDF4', and
-'NETCDF4_CLASSIC', The 'CLASSIC' format is the traditional 32-bit offset
-written by netCDF2 and netCDF3. As of 2005, nearly all netCDF datasets
-were in 'CLASSIC' format. The '64BIT' format was added in Fall, 2004.
-As of 2010, many netCDF datasets were in '64BIT' format. As of 2013, an
-increasing number of netCDF datasets were in 'NETCDF4_CLASSIC' format.
-
- The 'NETCDF4' format uses HDF5 as the file storage layer. The files
-are (usually) created, accessed, and manipulated using the traditional
-netCDF3 API (with numerous extensions). The 'NETCDF4_CLASSIC' format
-refers to netCDF4 files created with the 'NC_CLASSIC_MODEL' mask. Such
-files use HDF5 as the back-end storage format (unlike netCDF3), though
-they incorporate only netCDF3 features. Hence 'NETCDF4_CLASSIC' files
-are entirely readable by applications that use only the netCDF3 API
-(though the applications must be linked with the netCDF4 library). NCO
-must be built with netCDF4 to write files in the new 'NETCDF4' and
-'NETCDF4_CLASSIC' formats, and to read files in these formats. Datasets
-in the default 'CLASSIC' or the newer '64BIT' formats have maximum
-backwards-compatibility with older applications. NCO has deep support
-for 'NETCDF4' formats. If performance or disk-space as important as
-backwards compatibility, then use 'NETCDF4_CLASSIC' instead of 'CLASSIC'
-format files. As of 2014, NCO support for the 'NETCDF4' format is
-nearly complete and the most powerful and disk/RAM efficient workflows
-will utilize this format.
-
- As mentioned above, all operators write use the input file format for
-output files unless told otherwise. Toggling the short option '-6' or
-the long option '--6' or '--64bit' (or their KEY-VALUE equivalent
-'--fl_fmt=64bit') produces the netCDF3 64-bit offset format named
-'64BIT'. NCO must be built with netCDF 3.6 or higher to produce a
-'64BIT' file. Using the '-4' switch (or its long option equivalents
-'--4' or '--netcdf4'), or setting its KEY-VALUE equivalent
-'--fl_fmt=netcdf4' produces a 'NETCDF4' file (i.e., with all supported
-HDF5 features). Using the '-7' switch (or its long option equivalent
-'--7' (1), or setting its KEY-VALUE equivalent
-'--fl_fmt=netcdf4_classic' produces a 'NETCDF4_CLASSIC' file (i.e., with
-all supported HDF5 features like compression and chunking but without
-groups or new atomic types). Operators given the '-3' (or '--3') switch
-without arguments will (attempt to) produce netCDF3 'CLASSIC' output,
-even from netCDF4 input files.
-
- Note that 'NETCDF4' and 'NETCDF4_CLASSIC' are the same binary format.
-The latter simply causes a writing application to fail if it attempts to
-write a 'NETCDF4' file that cannot be completely read by the netCDF3
-library. Conversely, 'NETCDF4_CLASSIC' indicates to a reading
-application that all of the file contents are readable with the netCDF3
-library. NCO has supported reading/writing basic 'NETCDF4' and
-'NETCDF4_CLASSIC' files since October, 2005.
-
- ---------- Footnotes ----------
-
- (1) The reason (and mnemonic) for '-7' is that 'NETCDF4_CLASSIC'
-files include great features of both netCDF3 (compatibility) and netCDF4
-(compression, chunking) and, well, 3+4=7.
-
-3.9.2 Determining File Format
------------------------------
-
-Input files often end with the generic '.nc' suffix that leaves (perhaps
-by intention) the internal file format ambiguous. There are at least
-three ways to discover the internal format of a netCDF-supported file.
-These methods determine whether it is a classic (32-bit offset) or newer
-64-bit offset netCDF3 format, or is a netCDF4 format. Each method
-returns the information using slightly different terminology that
-becomes easier to understand with practice.
-
- First, examine the first line of global metadata output by 'ncks -M':
- % ncks -M foo_3c.nc
- Summary of foo_3c.nc: filetype = NC_FORMAT_CLASSIC, 0 groups ...
- % ncks -M foo_364.nc
- Summary of foo_364.nc: filetype = NC_FORMAT_64BIT, 0 groups ...
- % ncks -M foo_4c.nc
- Summary of foo_4c.nc: filetype = NC_FORMAT_NETCDF4_CLASSIC, 0 groups ...
- % ncks -M foo_4.nc
- Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4, 0 groups ...
- This method requires a netCDF4-enabled NCO version 3.9.0+ (i.e., from
-2007 or later). As of NCO version 4.4.0 (January, 2014), 'ncks' will
-also print the extended or underlying format of the input file. The
-extended filetype will be one of the six underlying formats that are
-accessible through the netCDF API. These formats are 'NC_FORMAT_NC3'
-(classic and 64-bit versions of netCDF3 formats), 'NC_FORMAT_NC_HDF5'
-(classic and extended versions of netCDF4, and "pure" HDF5 format),
-'NC_FORMAT_NC_HDF4' (HDF4 format), 'NC_FORMAT_PNETCDF' (PnetCDF format),
-'NC_FORMAT_DAP2' (accessed via DAP2 protocol), and 'NC_FORMAT_DAP4'
-(accessed via DAP2 protocol). For example,
- % ncks -D 2 -M hdf.hdf
- Summary of hdf.hdf: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF4), 0 groups ...
- % ncks -D 2 -M http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
- Summary of http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc: \
- filetype = NC_FORMAT_CLASSIC (representation of extended/underlying \
- filetype NC_FORMAT_DAP2), 0 groups
- % ncks -D 2 -M foo_4.nc
- Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF5), 0 groups
- The extended filetype determines some of the capabilities that netCDF
-has to alter the file.
-
- Second, query the file with 'ncdump -k':
- % ncdump -k foo_3c.nc
- classic
- % ncdump -k foo_364.nc
- 64-bit-offset
- % ncdump -k foo_4c.nc
- netCDF-4 classic model
- % ncdump -k foo_4.nc
- netCDF-4
- This method requires a netCDF4-enabled netCDF 3.6.2+ (i.e., from 2007
-or later).
-
- The third option uses the POSIX-standard 'od' (octal dump) command:
- % od -An -c -N4 foo_3c.nc
- C D F 001
- % od -An -c -N4 foo_364.nc
- C D F 002
- % od -An -c -N4 foo_4c.nc
- 211 H D F
- % od -An -c -N4 foo_4.nc
- 211 H D F
- This option works without NCO and 'ncdump'. Values of 'C D F 001'
-and 'C D F 002' indicate 32-bit (classic) and 64-bit netCDF3 formats,
-respectively, while values of '211 H D F' indicate either of the newer
-netCDF4 file formats.
-
-3.9.3 File Conversion
----------------------
-
-Let us demonstrate converting a file from any netCDF-supported input
-format into any netCDF output format (subject to limits of the output
-format). Here the input file 'in.nc' may be in any of these formats:
-netCDF3 (classic and 64bit), netCDF4 (classic and extended), HDF4, HDF5,
-HDF-EOS (version 2 or 5), and DAP. The switch determines the output
-format written in the comment: (1)
- ncks --fl_fmt=classic in.nc foo_3c.nc # netCDF3 classic
- ncks --fl_fmt=64bit in.nc foo_364.nc # netCDF3 64bit
- ncks --fl_fmt=netcdf4_classic in.nc foo_4c.nc # netCDF4 classic
- ncks --fl_fmt=netcdf4 in.nc foo_4.nc # netCDF4
- ncks -3 in.nc foo_3c.nc # netCDF3 classic
- ncks --3 in.nc foo_3c.nc # netCDF3 classic
- ncks -6 in.nc foo_364.nc # netCDF3 64bit
- ncks --64 in.nc foo_364.nc # netCDF3 64bit
- ncks -4 in.nc foo_4.nc # netCDF4
- ncks --4 in.nc foo_4.nc # netCDF4
- ncks -7 in.nc foo_4c.nc # netCDF4 classic
- ncks --7 in.nc foo_4c.nc # netCDF4 classic
- Of course since most operators support these switches, the
-"conversions" can be done at the output stage of arithmetic or metadata
-processing rather than requiring a separate step. Producing (netCDF3)
-'CLASSIC' or '64BIT' files from 'NETCDF4_CLASSIC' files will always
-work.
-
- ---------- Footnotes ----------
-
- (1) The switches '-5', '--5', and 'pnetcdf' are reserved for PnetCDF
-files, i.e., 'NC_FORMAT_PNETCDF'. Such files are similar to netCDF3
-classic files, yet also support 64-bit offsets and the additional
-netCDF4 atomic types.
-
-3.9.4 Autoconversion
---------------------
-
-Because of the dearth of support for netCDF4 amongst tools and user
-communities (including the CF conventions), it is often useful to
-convert netCDF4 to netCDF3 for certain applications. Until NCO version
-4.4.0 (January, 2014), producing netCDF3 files from netCDF4 files only
-worked if the input files contained no netCDF4-specific features (e.g.,
-atomic types, multiple record dimensions, or groups). As of NCO version
-4.4.0, 'ncks' supports "autoconversion" of many netCDF4 features to
-their closest netCDF3-compatible representations. Since converting
-netCDF4 to netCDF3 results in loss of features, "automatic
-down-conversion" may be a more precise description of what we term
-autoconversion.
-
- NCO employs three algorithms to downconvert netCDF4 to netCDF3:
- 1. Autoconversion of atomic types: Autoconversion automatically
- promotes 'NC_UBYTE' to 'NC_SHORT', and 'NC_USHORT' to 'NC_INT'. It
- automatically demotes the three types 'NC_UINT', 'NC_UINT64', and
- 'NC_INT64' to 'NC_INT'. And it converts 'NC_STRING' to 'NC_CHAR'.
- All numeric conversions work for attributes and variables of any
- rank. Two numeric types ('NC_UBYTE' and 'NC_USHORT') are
- _promoted_ to types with greater range (and greater storage). This
- extra range is often not used so promotion perhaps conveys the
- wrong impression. However, promotion never truncates values or
- loses data (this perhaps justifies the extra storage). Three
- numeric types ('NC_UINT', 'NC_UINT64' and 'NC_INT64') are
- _demoted_. Since the input range is larger than the output range,
- demotion can result in numeric truncation and thus loss of data.
- In such cases, it would possible to convert the data to floating
- point values instead. If this feature interests you, please be the
- squeaky wheel and let us know.
-
- String conversions (to 'NC_CHAR') work for all attributes, but not
- for variables. This is because attributes are at most
- one-dimensional and may be of any size whereas variables require
- gridded dimensions that usually do not fit the ragged sizes of text
- strings. Hence scalar 'NC_STRING' attributes are correctly
- converted to and stored as 'NC_CHAR' attributes in the netCDF3
- output file, but 'NC_STRING' variables are not correctly converted.
- If this limitation annoys or enrages you, please let us know by
- being the squeaky wheel.
-
- 2. Convert multiple record dimensions to fixed-size dimensions. Many
- netCDF4 and HDF5 datasets have multiple unlimited dimensions.
- Since a netCDF3 file may have at most one unlimited dimension, all
- but possibly one unlimited dimension from the input file must be
- converted to fixed-length dimensions prior to storing netCDF4 input
- as netCDF3 output. By invoking '--fix_rec_dmn all' the user
- ensures the output file will adhere to netCDF3 conventions and the
- user need not know the names of the specific record dimensions to
- fix. See *note ncks netCDF Kitchen Sink:: for a description of the
- '--fix_rec_dmn' option.
-
- 3. Flattening (removal) of groups. Many netCDF4 and HDF5 datasets
- have group hierarchies. Since a netCDF3 file may not have any
- groups, groups in the input file must be removed. This is also
- called "flattening" the hierarchical file. See *note Group Path
- Editing:: for a description of the GPE option '-G :' to flatten
- files.
-
- Putting the three algorithms together, one sees that the recipe to
-convert netCDF4 to netCDF4 becomes increasingly complex as the netCDF4
-features in the input file become more elaborate:
- # Convert file with netCDF4 atomic types
- ncks -3 in.nc4 out.nc3
- # Convert file with multiple record dimensions + netCDF4 atomic types
- ncks -3 --fix_rec_dmn=all in.nc4 out.nc3
- # Convert file with groups, multiple record dimensions + netCDF4 atomic types
- ncks -3 -G : --fix_rec_dmn=all in.nc4 out.nc3
- Future versions of NCO may automatically invoke the record dimension
-fixation and group flattening when converting to netCDF3 (rather than
-requiring it be specified manually). If this feature would interest
-you, please let us know.
-
-3.10 Large File Support
-=======================
-
-Availability: All operators
-Short options: none
-Long options: none
- NCO has Large File Support (LFS), meaning that NCO can write files
-larger than 2 GB on some 32-bit operating systems with netCDF libraries
-earlier than version 3.6. If desired, LFS support must be configured
-when both netCDF and NCO are installed. netCDF versions 3.6 and higher
-support 64-bit file addresses as part of the netCDF standard. We
-recommend that users ignore LFS support which is difficult to configure
-and is implemented in NCO only to support netCDF versions prior to 3.6.
-This obviates the need for configuring explicit LFS support in
-applications (such as NCO) that now support 64-bit files directly
-through the netCDF interface. See *note File Formats and Conversion::
-for instructions on accessing the different file formats, including
-64-bit files, supported by the modern netCDF interface.
-
- If you are still interested in explicit LFS support for netCDF
-versions prior to 3.6, know that LFS support depends on a complex,
-interlocking set of operating system (1) and netCDF support issues. The
-netCDF LFS FAQ
-(http://my.unidata.ucar.edu/content/software/netcdf/faq-lfs.html)
-describes the various file size limitations imposed by different
-versions of the netCDF standard. NCO and netCDF automatically attempt
-to configure LFS at build time.
-
- ---------- Footnotes ----------
-
- (1) Linux and AIX do support LFS.
-
-3.11 Subsetting Files
-=====================
-
-Options '-g GRP'
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-g'
-Long options: '--grp' and '--group'
-Options '-v VAR' and '-x'
-Availability: ('ncap2'), 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks',
-'ncpdq', 'ncra', 'ncrcat', 'ncwa'
-Short options: '-v', '-x'
-Long options: '--variable', '--exclude' or '--xcl'
-Options '--unn'
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options:
-Long options: '--unn' and '--union'
-Options '--grp_xtr_var_xcl'
-Availability: 'ncks'
-Short options:
-Long options: '--gxvx' and '--grp_xtr_var_xcl'
- Subsetting variables refers to explicitly specifying variables and
-groups to be included or excluded from operator actions. Subsetting is
-controlled by the '-v VAR[,...]' and '-x' options for directly
-specifying variables. Specifying groups, whether in addition to or
-instead of variables, is quite similar and is controlled by the '-g
-GRP[,...]' and '-x' options. A list of variables or groups to extract
-is specified following the '-v' and '-g' options, e.g., '-v
-time,lat,lon' or '-g grp1,grp2'. Both options may be specified
-simultaneously and NCO will extract the intersection of the lists, i.e.,
-only variables of the specified names found in groups of the specified
-names. The '--unn' option causes NCO to extract the union, rather than
-the intersection, of the specified groups and variables. Not using the
-'-v' or '-g' option is equivalent to specifying all variables or groupp,
-respectively. The '-x' option causes the list of variables specified
-with '-v' to be _excluded_ rather than _extracted_. Thus '-x' saves
-typing when you only want to extract fewer than half of the variables in
-a file.
-
- Variables or groups explicitly specified for extraction with '-v
-VAR[,...]' or '-g GRP[,...]' _must_ be present in the input file or an
-error will result. Variables explicitly specified for _exclusion_ with
-'-x -v VAR[,...]' need not be present in the input file. To accord with
-the sophistication of the underlying hierarchy, group subsetting is
-controlled by a few powerful yet subtle syntactical distinctions. When
-learning this syntax it is helpful to keep in mind the similarity
-between group hierarchies and directory structures.
-
- As of NCO 4.4.4 (June, 2014), 'ncks' (alone) supports an option to
-include specified groups yet exclude specified variables. The
-'--grp_xtr_var_xcl' switch (with long option equivalent '--gxvx')
-extracts all contents of groups given as arguments to '-g GRP[,...]',
-except for variables given as arguments to '-v VAR[,...]'. Use this
-when one or a few variables in hierarchical files are not to be
-extracted, and all other variables are. This is useful when coercing
-netCDF4 files into netCDF3 files such as with converting, flattening, or
-dismembering files (see *note Flattening Groups::).
- ncks --grp_xtr_var_xcl -g g1 -v v1 # Extract all of group g1 except v1
-
- Two properties of subsetting, recursion and anchoring, are best
-illustrated by reminding the user of their UNIX equivalents. The UNIX
-command 'mv src dst' moves 'src' _and all its subdirectories_ (and all
-their subdirectories etc.) to 'dst'. In other words 'mv' is, by
-default, _recursive_. In contrast, the UNIX command 'cp src dst' moves
-'src', and only 'src', to 'dst', If 'src' is a directory, not a file,
-then that command fails. One must explicitly request to copy
-directories recursively, i.e., with 'cp -r src dst'. In NCO recursive
-extraction (and copying) of groups is the default (like with 'mv', not
-with 'cp'). Recursion is turned off by appending a trailing slash to
-the path.
-
- These UNIX commands also illustrate a property we call _anchoring_.
-The command 'mv src dst' moves (recursively) the source directory 'src'
-to the destination directory 'dst'. If 'src' begins with the slash
-character then the specified path is relative to the root directory,
-otherwise the path is relative to the current working directory. In
-other words, an initial slash character anchors the subsequent path to
-the root directory. In NCO an initial slash anchors the path at the
-root group. Paths that begin and end with slash characters (e.g., '//',
-'/g1/', and '/g1/g2/') are both anchored and non-recursive.
-
- Consider the following commands, all of which may be assumed to end
-with 'in.nc out.nc':
- ncks -g g1 # Extract, recursively, all groups with a g1 component
- ncks -g g1/ # Extract, non-recursively, all groups terminating in g1
- ncks -g /g1 # Extract, recursively, root group g1
- ncks -g /g1/ # Extract, non-recursively root group g1
- ncks -g // # Extract, non-recursively the root group
- The first command is probably the most useful and common. It would
-extract these groups, if present, and all their direct ancestors and
-children: '/g1', '/g2/g1', and '/g3/g1/g2'. In other words, the
-simplest form of '-g grp' grabs all groups that (and their direct
-ancestors and children, recursively) that have 'grp' as a complete
-component of their path. A simple string match is insufficient, GRP
-must be a complete component (i.e., group name) in the path. The option
-'-g g1' would not extract these groups because 'g1' is not a complete
-component of the path: '/g12', '/fg1', and '/g1g1'. The second command
-above shows how a terminating slash character '/' cancels the recursive
-copying of groups. An argument to '-g' which terminates with a slash
-character extracts the group and its direct ancestors, but none of its
-children. The third command above shows how an initial slash character
-'/' anchors the argument to the root group. The third command would not
-extract the group '/g2/g1' because the 'g1' group is not at the root
-level, but it would extract, any group '/g1' at the root level and all
-its children, recursively. The fourth command is the non-recursive
-version of the third command. The fifth command is a special case of
-the fourth command.
-
- As mentioned above, both '-v' and '-g' options may be specified
-simultaneously and NCO will, by default, extract the intersection of the
-lists, i.e., the specified variables found in the specified groups (1).
-The '--unn' option causes NCO to extract the union, rather than the
-intersection, of the specified groups and variables. Consider the
-following commands (which may be assumed to end with 'in.nc out.nc'):
- # Intersection-mode subsetting (default)
- ncks -g g1 -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1
- ncks -g /g1 -v v1 # Yes: /g1/v1, /g1/g2/v1. No: /v1, /g2/v1, /g2/g1/v1
- ncks -g g1/ -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
- ncks -v g1/v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
- ncks -g /g1/ -v v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
- ncks -v /g1/v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
-
- # Union-mode subsetting (invoke with --unn or --union)
- ncks -g g1 -v v1 --unn # All variables in g1 or progeny, or named v1
- ncks -g /g1 -v v1 --unn # All variables in /g1 or progeny, or named v1
- ncks -g g1/ -v v1 --unn # All variables in g1 or named v1
- ncks -g /g1/ -v v1 --unn # All variables in /g1 or named v1
- The first command ('-g g1 -v v1') extracts the variable 'v1' from any
-group named 'g1' or descendent 'g1'. The second command extracts 'v1'
-from any root group named 'g1' and any descendent groups as well. The
-third and fourth commands are equivalent ways of extracting 'v1' only
-from the root group named 'g1' (not its descendents). The fifth and
-sixth commands are equivalent ways of extracting the variable 'v1' only
-from the root group named 'g1'. Subsetting in union-mode (with '--unn')
-causes all variables to be extracted which meet either one or both of
-the specifications of the variable and group specifications. Union-mode
-subsetting is simply the logical "OR" of intersection-mode subsetting.
-As discussed below, the group and variable specifications may be comma
-separated lists of regular expressions for added control over
-subsetting.
-
- Remember, if averaging or concatenating large files stresses your
-systems memory or disk resources, then the easiest solution is often to
-subset (with '-g' and/or '-v') to retain only the most important
-variables (*note Memory Requirements::).
- ncks in.nc out.nc # Extract all groups and variables
- ncks -v scl # Extract variable scl from all groups
- ncks -g g1 # Extract group g1 and descendents
- ncks -x -g g1 # Extract all groups except g1 and descendents
- ncks -g g2,g3 -v scl # Extract scl from groups g2 and g3
- Overwriting and appending work as expected:
- # Replace scl in group g2 in out.nc with scl from group g2 from in.nc
- ncks -A -g g2 -v scl in.nc out.nc
-
- Due to its special capabilities, 'ncap2' interprets the '-v' switch
-differently (*note ncap2 netCDF Arithmetic Processor::). For 'ncap2',
-the '-v' switch takes no arguments and indicates that _only_
-user-defined variables should be output. 'ncap2' neither accepts nor
-understands the -X and -G switches.
-
- Regular expressions the syntax that NCO use pattern-match object
-names in netCDF file against user requests. The user can select all
-variables beginning with the string 'DST' from an input file by
-supplying the regular expression '^DST' to the '-v' switch, i.e., '-v
-'^DST''. The meta-characters used to express pattern matching
-operations are '^$+?.*[]{}|'. If the regular expression pattern matches
-_any_ part of a variable name then that variable is selected. This
-capability is also called "wildcarding", and is very useful for
-sub-setting large data files.
-
- Extended regular expressions are defined by the POSIX 'grep -E' (aka
-'egrep') command. As of NCO 2.8.1 (August, 2003), variable name
-arguments to the '-v' switch may contain "extended regular expressions".
-As of NCO 3.9.6 (January, 2009), variable names arguments to 'ncatted'
-may contain "extended regular expressions". As of NCO 4.2.4 (November,
-2012), group name arguments to the '-g' switch may contain "extended
-regular expressions".
-
- Because of its wide availability, NCO uses the POSIX regular
-expression library 'regex'. Regular expressions of arbitary complexity
-may be used. Since netCDF variable names are relatively simple
-constructs, only a few varieties of variable wildcards are likely to be
-useful. For convenience, we define the most useful pattern matching
-operators here:
-'^'
- Matches the beginning of a string
-'$'
- Matches the end of a string
-'.'
- Matches any single character
-The most useful repetition and combination operators are
-'?'
- The preceding regular expression is optional and matched at most
- once
-'*'
- The preceding regular expression will be matched zero or more times
-'+'
- The preceding regular expression will be matched one or more times
-'|'
- The preceding regular expression will be joined to the following
- regular expression. The resulting regular expression matches any
- string matching either subexpression.
-
- To illustrate the use of these operators in extracting variables and
-groups, consider file 'in_grp.nc' with groups 'g0'-'g9', and subgroups
-'s0'-'s9', in each of those groups, and file 'in.nc' with variables 'Q',
-'Q01'-'Q99', 'Q100', 'QAA'-'QZZ', 'Q_H2O', 'X_H2O', 'Q_CO2', 'X_CO2'.
- ncks -v '.+' in.nc # All variables (default)
- ncks -v 'Q.?' in.nc # Variables that contain Q
- ncks -v '^Q.?' in.nc # Variables that start with Q
- ncks -v '^Q+.?.' in.nc # Q, Q0--Q9, Q01--Q99, QAA--QZZ, etc.
- ncks -v '^Q..' in.nc # Q01--Q99, QAA--QZZ, etc.
- ncks -v '^Q[0-9][0-9]' in.nc # Q01--Q99, Q100
- ncks -v '^Q[[:digit:]]{2}' in.nc # Q01--Q99
- ncks -v 'H2O$' in.nc # Q_H2O, X_H2O
- ncks -v 'H2O$|CO2$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
- ncks -v '^Q[0-9][0-9]$' in.nc # Q01--Q99
- ncks -v '^Q[0-6][0-9]|7[0-3]' in.nc # Q01--Q73, Q100
- ncks -v '(Q[0-6][0-9]|7[0-3])$' in.nc # Q01--Q73
- ncks -v '^[a-z]_[a-z]{3}$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
- ncks -g 'g.' in_grp.nc # 10 Groups g0-g9
- ncks -g 's.' in_grp.nc # 100 sub-groups g0/s0, g0/s1, ... g9/s9
- ncks -g 'g.' -v 'v.' in_grp.nc # All variables 'v.' in groups 'g.'
- Beware--two of the most frequently used repetition pattern matching
-operators, '*' and '?', are also valid pattern matching operators for
-filename expansion (globbing) at the shell-level. Confusingly, their
-meanings in extended regular expressions and in shell-level filename
-expansion are significantly different. In an extended regular
-expression, '*' matches zero or more occurences of the preceding regular
-expression. Thus 'Q*' selects all variables, and 'Q+.*' selects all
-variables containing 'Q' (the '+' ensures the preceding item matches at
-least once). To match zero or one occurence of the preceding regular
-expression, use '?'. Documentation for the UNIX 'egrep' command details
-the extended regular expressions which NCO supports.
-
- One must be careful to protect any special characters in the regular
-expression specification from being interpreted (globbed) by the shell.
-This is accomplish by enclosing special characters within single or
-double quotes
- ncra -v Q?? in.nc out.nc # Error: Shell attempts to glob wildcards
- ncra -v '^Q+..' in.nc out.nc # Correct: NCO interprets wildcards
- ncra -v '^Q+..' in*.nc out.nc # Correct: NCO interprets, Shell globs
- The final example shows that commands may use a combination of
-variable wildcarding and shell filename expansion (globbing). For
-globbing, '*' and '?' _have nothing to do_ with the preceding regular
-expression! In shell-level filename expansion, '*' matches any string,
-including the null string and '?' matches any single character.
-Documentation for 'bash' and 'csh' describe the rules of filename
-expansion (globbing).
-
- ---------- Footnotes ----------
-
- (1) Intersection-mode can also be explicitly invoked with the '--nsx'
-or '--intersection' switches. These switches are supplied for clarity
-and consistency and do absolutely nothing since intersection-mode is the
-default.
-
-3.12 Subsetting Coordinate Variables
-====================================
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks',
-'ncpdq', 'ncra', 'ncrcat', 'ncwa'
-Short options: '-C', '-c'
-Long options: '--no-coords', '--no-crd', '--crd', '--coords'
- By default, coordinates variables associated with any variable
-appearing in the INPUT-FILE will be placed in the OUTPUT-FILE, even if
-they are not explicitly specified, e.g., with the '-v' switch. Thus
-variables with a latitude coordinate 'lat' always carry the values of
-'lat' with them into the OUTPUT-FILE. This feature can be disabled with
-'-C', which causes NCO to not automatically add coordinates to the
-variables appearing in the OUTPUT-FILE. However, using '-C' does not
-preclude the user from including some coordinates in the output files
-simply by explicitly selecting the coordinates with the -V option. The
-'-c' option, on the other hand, is a shorthand way of automatically
-specifying that _all_ coordinate variables in the INPUT-FILES should
-appear in the OUTPUT-FILE. Thus '-c' allows the user to select all the
-coordinate variables without having to know their names. As of NCO
-version 4.4.5 (July, 2014) both '-c' and '-C' honor the CF
-'ancillary_variables' convention described in *note CF Conventions::.
-As of NCO version 4.0.8 (April, 2011) both '-c' and '-C' honor the CF
-'bounds' convention described in *note CF Conventions::. As of NCO
-version 3.9.6 (January, 2009) both '-c' and '-C' honor the CF
-'coordinates' convention described in *note CF Conventions::.
-
-3.13 Group Path Editing
-=======================
-
-Options '-G GPE_DSC'
-Availability: 'ncbo', 'ncecat', 'nces', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-G'
-Long options: '--gpe'
-
- "Group Path Editing", or GPE, allows the user to restructure (i.e.,
-add, remove, and rename groups) in the output file relative to the input
-file based on the instructions they provide. As of NCO 4.2.3 (November,
-2012), all operators that accept netCDF4 files with groups accept the
-'-G' switch, or its long-option equivalent '--gpe'. To master GPE one
-must understand the meaning of the required GPE_DSC structure/argument
-that specifies the transformation of input-to-output group paths.
-
- Each GPE_DSC contains up to three elements (two are optional) in the
-following order:
-GPE_DSC = GRP_PTH:LVL_NBR or GRP_PTH at LVL_NBR
-
-GRP_PTH
- Group Path. This (optional) component specifies the output group
- path that should be appended after any editing (i.e., deletion or
- truncation) of the input path is performed.
-LVL_NBR
- The number of levels to delete (from the head) or truncate (from
- the tail) of the input path.
-If both components of the argument are present, then a single character,
-either the colon or at-sign (':' or '@'), must separate them. If only
-GRP_PTH is specifed, the separator character may be omitted, e.g., '-G
-g1'. If only LVL_NBR is specifed, the separator character is still
-required to indicate it is a LVL_NBR arugment and not a GRP_PTH, e.g.,
-'-G :-1' or '-G @1'.
-
- If the at-sign separator character '@' is used instead of the colon
-separator character ':', then the following LVL_NBR arugment must be
-positive and it will be assumed to refer to Truncation-Mode. Hence, '-G
-:-1' is the same as '-G @1'. This is simply a way of making the LVL_NBR
-argument positive-definite.
-
-3.13.1 Deletion, Truncation, and Flattening of Groups
------------------------------------------------------
-
-GPE has three editing modes: Delete, Truncate, and Flatten. Select one
-of GPE's three editing modes by supplying a LVL_NBR that is positive,
-negative, or zero for Delete-, Truncate- and Flatten-mode, respectively.
-
- In Delete-mode, LVL_NBR is a positive integer which specifies the
-maximum number of group path components (i.e., groups) that GPE will try
-to delete from the head of GRP_PTH. For example LVL_NBR = 3 changes the
-input path '/g1/g2/g3/g4/g5' to the output path '/g4/g5'. Input paths
-with LVL_NBR or fewer components (groups) are completely erased and the
-output path commences from the root level.
-
- In other words, GPE is tolerant of specifying too many group
-components to delete. It deletes as many as possible, without
-complaint, and then begins to flatten the file (which will fail if
-namespace conflicts arise).
-
- In Truncate-mode, LVL_NBR is a negative integer which specifies the
-maximum number of group path components (i.e., groups) that GPE will try
-to truncate from the tail of GRP_PTH. For example LVL_NBR = -3 changes
-the input path '/g1/g2/g3/g4/g5' to the output path '/g1/g2'. Input
-paths with LVL_NBR or fewer components (groups) are completely erased
-and the output path commences from the root level.
-
- In Flatten-mode, indicated by the separator character alone or with
-LVL_NBR = 0, GPE removes the entire group path from the input file and
-constructs the output path beginning at the root level. For example '-G
-:0' and '-G :' are identical and change the input path '/g1/g2/g3/g4/g5'
-to the output path '/' whereas '-G g1:0' and '-G g1:' are identical and
-result in the output path '/g1' for all variables.
-
- Subsequent to the alteration of the input path by the specified
-editing mode, if any, GPE prepends (in Delete Mode) or Appends (in
-Truncate-mode) any specifed GRP_PTH to the output path. For example '-G
-g2' changes the input paths '/' and '/g1' to '/g2' and '/g1/g2',
-respectively. Likewise, '-G g2/g3' changes the input paths '/' and
-'/g1' to '/g2/g3' and '/g1/g2/g3', respectively. When GRP_PTH and
-LVL_NBR are both specified, the editing actions are taken in sequence so
-that, e.g., '-G g1/g2:2' changes the input paths '/' and '/h1/h2/h3/h4'
-to '/g1/g2' and '/g1/g2/h3/h4', respectively. Likewise, '-G g1/g2:-2'
-changes the input paths '/' and '/h1/h2/h3/h4' to '/g1/g2' and
-'/h1/h2/g1/g2', respectively.
-
- Combining GPE with subsetting (*note Subsetting Files::) yields
-powerful control over the extracted (or excluded) variables and groups
-and their placement in the output file as shown by the following
-commands. All commands below may be assumed to end with 'in.nc out.nc'.
- # Prepending paths without editing:
- ncks # /g?/v? -> /g?/v?
- ncks -v v1 # /g?/v1 -> /g?/v1
- ncks -g g1 # /g1/v? -> /g1/v?
- ncks -G o1 # /g?/v? -> /o1/g?/v?
- ncks -G o1 -g g1 # /g1/v? -> /o1/g1/v?
- ncks -g g1 -v v1 # /g1/v1 -> /g1/v1
- ncks -G o1 -v v1 # /g?/v1 -> /o1/g?/v1
- ncks -G o1 -g g1 -v v1 # /g1/v1 -> /o1/g1/v1
- ncks -G g1 -g / -v v1 # /v1 -> /g1/v1
- ncks -G g1/g2 -v v1 # /g?/v1 -> /g1/g2/g?/v1
- # Delete-mode: Delete from and Prepend to path head
- # Syntax: -G [ppn]:lvl_nbr = # of levels to delete
- ncks -G :1 -g g1 -v v1 # /g1/v1 -> /v1
- ncks -G :1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g1/v1
- ncks -G :2 -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
- ncks -G :2 -g g1 -v v1 # /g1/v1 -> /v1
- ncks -G g2:1 -g g1 -v v1 # /g1/v1 -> /g2/v1
- ncks -G g2:2 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
- ncks -G g2:1 -g / -v v1 # /v1 -> /g2/v1
- ncks -G g2:1 -v v1 # /v1 -> /g2/v1
- ncks -G g2:1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/g1/v1
- # Flatten-mode: Remove all input path components
- # Syntax: -G [apn]: colon without numerical argument
- ncks -G : -v v1 # /g?/v1 -> /v1
- ncks -G : -g g1 -v v1 # /g1/v1 -> /v1
- ncks -G : -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
- ncks -G g2: -v v1 # /g?/v1 -> /g2/v1
- ncks -G g2: # /g?/v? -> /g2/v?
- ncks -G g2: -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
- # Truncate-mode: Truncate from and Append to path tail
- # Syntax: -G [apn]:-lvl_nbr = # of levels to truncate
- # NB: -G [apn]:-lvl_nbr is equivalent to -G [apn]@lvl_nbr
- ncks -G :-1 -g g1 -v v1 # /g1/v1 -> /v1
- ncks -G :-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/v1
- ncks -G :-2 -g g1/g2 -v v1 # /g1/g2/v1 -> /v1
- ncks -G :-2 -g g1 -v v1 # /g1/v1 -> /v1
- ncks -G g2:-1 -v v1 # /g?/v1 -> /g2/v1
- ncks -G g2:-1 -g g1 -v v1 # /g1/v1 -> /g2/v1
- ncks -G g1:-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/g1/v1
-
-3.13.2 Moving Groups
---------------------
-
-Until fall 2013 (netCDF version 4.3.1-pre1), netCDF contained no library
-function for renaming groups, and therefore 'ncrename' cannot rename
-groups. However, NCO built on earlier versions of netCDF than 4.3.1 can
-use a GPE-based workaround mechanism to "rename" groups. The GPE
-mechanism actually _moves_ (i.e., copies to a new location) groups, a
-more arduous procedure than simply renaming them. GPE applies to all
-selected groups, so, in the general case, one must move only the desired
-group to a new file, and then merge that new file with the original to
-obtain a file where the desired group has been "renamed" and all else is
-unchanged. Here is how to "rename" group '/g4' to group '/f4' with GPE
-instead of 'ncrename'
- ncks -O -G f4:1 -g g4 ~/nco/data/in_grp.nc ~/tmp.nc # Move /g4 to /f4
- ncks -O -x -g g4 ~/nco/data/in_grp.nc ~/out.nc # Excise /g4
- ncks -A ~/tmp.nc ~/out.nc # Add /f4 to new file
- If the original group 'g4' is not excised from 'out.nc' (step two
-above), then the final output file would contain both 'g4' and a copy
-named 'f4'. Thus GPE can be used to both "rename" and copy groups. The
-recommended way to rename groups when when netCDF version 4.3.1 is
-availale is to use 'ncrename' (*note ncrename netCDF Renamer::).
-
- One may wish to flatten hierarchical group files for many reasons.
-These include 1. Obtaining flat netCDF3 files for use with tools that do
-not work with netCDF4 files, 2. Splitting apart hierarchies to
-re-assemble into different hierarchies, and 3. Providing a subset of a
-hierarchical file with the simplest possible storage structure.
- ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /cesm to /
- The '-3' switch (1) specifies the output dataset should be in netCDF3
-format, the '-G :' option flattens all extracted groups, and the '-g
-cesm' option extracts only the 'cesm' group and leaves all other groups
-(e.g., 'ecmwf', 'giss').
-
- ---------- Footnotes ----------
-
- (1) Note that the '-3' switch should appear _after_ the '-G' and '-g'
-switches. This is due to an artifact of the GPE implementation which we
-wish to remove in the future.
-
-3.13.3 Dismembering Files
--------------------------
-
-Let us show how to completely disaggregate (or, more memorably)
-_dismember_ a hierarchical dataset. For now we take this to mean: store
-each group as a standalone flat dataset in netCDF3 format. This can be
-accomplished by looping the previous example over all groups. This
-script 'ncdismember' dismembers the input file FL_IN specified in the
-first argument and places the resulting files in the directory DRC_OUT
-specified by the second argument:
- cat > ~/ncdismember << 'EOF'
- # Purpose: Dismember netCDF4/HDF5 hierarchical files. CF-check them.
- # Place each input file group in separate netCDF3 output file
- # Described in NCO User Guide at http://nco.sf.net/nco.html#dismember
- # Requirements: NCO 4.3.x+, UNIX shell utilities awk, grep, sed
- # Optional: CFchecker command https://bitbucket.org/mde_/cfchecker
-
- # Usage:
- # ncdismember <fl_in> <drc_out> [flg_cf] [cf_vrs] [opt]
- # where fl_in is input file/URL to dismember, drc_out is output directory,
- # CF-compliance check is performed when optional third argument is 'cf',
- # Optional fourth argument cf_vrs is CF version to check
- # Optional fifth argument opt passes straight through to ncks
- # chmod a+x ~/sh/ncdismember
- # ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
- # ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
- # ncdismember http://dust.ess.uci.edu/nco/mdl_1.nc /data/zender/nco/tmp
- # ncdismember http://thredds-test.ucar.edu/thredds/dodsC/testdods/foo.nc /data/zender/nco/tmp
- # ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
- # ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.3
- # ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.5 --fix_rec_dmn=all
-
- # Command line argument defaults
- fl_in="${HOME}/nco/data/mdl_1.nc" # [sng] Input file to dismember/check
- drc_out="${DATA}/nco/tmp" # [sng] Output directory
- flg_cf='0' # [flg] Perform CF-compliance check
- cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
- opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
- # Use single quotes to pass multiple arguments to opt=${5}
- # Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
-
- # Command line argument option parsing
- if [ -n "${1}" ]; then fl_in=${1}; fi
- if [ -n "${2}" ]; then drc_out=${2}; fi
- if [ -n "${3}" ]; then flg_cf=${3}; fi
- if [ -n "${4}" ]; then cf_vrs=${4}; fi
- if [ -n "${5}" ]; then opt=${5}; fi
-
- # Prepare output directory
- echo "NCO dismembering file ${fl_in}"
- fl_stb=$(basename ${fl_in})
- drc_out=${drc_out}/${fl_stb}
- mkdir -p ${drc_out}
- cd ${drc_out}
- # Obtain group list
- grp_lst=`ncks --cdl -m ${fl_in} | grep '// group' | awk '{$1=$2=$3="";sub(/^ */,"",$0);print}'`
- IFS=$'\n' # Change Internal-Field-Separator from <Space><Tab><Newline> to <Newline>
- for grp_in in ${grp_lst} ; do
- # Replace slashes by dots for output group filenames
- grp_out=`echo ${grp_in} | sed 's/\///' | sed 's/\//./g'`
- if [ "${grp_out}" = '' ]; then grp_out='root' ; fi
- # Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
- hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
- # Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
- # Use eval in case ${opt} contains multiple arguments separated by whitespace
- eval ${cmd}
- if [ ${flg_cf} = 'cf' ]; then
- # cfchecker needs Conventions <= 1.5
- no_bck_sls=`echo ${drc_out}/${grp_out} | sed 's/\\\ / /g'`
- ncatted -h -a Conventions,global,o,c,CF-${cf_vrs} ${no_bck_sls}.nc
- else # !flg_cf
- echo ${drc_out}/${grp_out}.nc
- fi # !flg_cf
- done
- if [ ${flg_cf} = 'cf' ]; then
- echo "CFchecker reports CF-compliance of each group in flat netCDF3 format"
- cfchecker -c ${cf_vrs} *.nc
- fi # !flg_cf
- EOF
- chmod 755 ~/ncdismember # Make command executable
- /bin/mv -f ~/ncdismember ~/sh # Store in location on $PATH, e.g., /usr/local/bin
-
- zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp
- NCO dismembering file /home/zender/nco/data/mdl_1.nc
- /data/zender/nco/tmp/mdl_1.nc/cesm.cesm_01.nc
- /data/zender/nco/tmp/mdl_1.nc/cesm.cesm_02.nc
- /data/zender/nco/tmp/mdl_1.nc/cesm.nc
- /data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_01.nc
- /data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_02.nc
- /data/zender/nco/tmp/mdl_1.nc/ecmwf.nc
- /data/zender/nco/tmp/mdl_1.nc/root.nc
- A (potentially more portable) binary executable could be written to
-dismember all groups with a single invocation, yet dismembering without
-loss of information is possible now with this simple script on all
-platforms with UNIXy utilities. Note that all dimensions inherited by
-groups in the input file are correctly placed by 'ncdismember' into the
-flat files. Moreover, each output file preserves the group metadata of
-all ancestor groups, including the global metadata from the input file.
-As written, the script could fail on groups that contain advanced
-netCDF4 features because the user requests (with the '-3' switch) that
-output be netCDF3 classic format. However, 'ncks' detects many format
-incompatibilities in advance and works around them. For example, 'ncks'
-autoconverts netCDF4-only atomic-types (such as 'NC_STRING' and
-'NC_UBYTE') to corresponding netCDF3 atomic types ('NC_CHAR' and
-'NC_SHORT') when the output format is netCDF3.
-
-3.13.4 Checking CF-compliance
------------------------------
-
-One application of dismembering is to check the CF-compliance of each
-group in a file. When invoked with the optional third argumnt 'cf',
-'ncdismember' passes each file it generates to the freely available (1)
-'cfchecker' command.
- zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
- NCO dismembering file /home/zender/nco/data/mdl_1.nc
- CFchecker reports CF-compliance of each group in flat netCDF3 format
- WARNING: Using the default (non-CF) Udunits database
- cesm.cesm_01.nc:
- INFO: INIT: running CFchecker version 1.5.15
- INFO: INIT: checking compliance with convention CF-1.5
- INFO: INIT: using standard name table version: 25, last modified: 2013-07-05T05:40:30Z
- INFO: INIT: using area type table version: 2, date: 10 July 2013
- INFO: 2.4: no axis information found in dimension variables, not checking dimension order
- WARNING: 3: variable "tas1" contains neither long_name nor standard_name attribute
- WARNING: 3: variable "tas2" contains neither long_name nor standard_name attribute
- INFO: 3.1: variable "tas1" does not contain units attribute
- INFO: 3.1: variable "tas2" does not contain units attribute
- --------------------------------------------------
- cesm.cesm_02.nc:
- ...
- By default the CF version checked is determined automatically by
-'cfchecker'. The user can override this default by supplying a
-supported CF version, e.g., '1.3', as an optional fourth argument to
-'ncdismember'. Current valid CF options are '1.0', '1.1', '1.2', '1.3',
-'1.4', and '1.5'.
-
- Our development and testing of 'ncdismember' is funded by our
-involvement in NASA's Dataset Interoperability Working Group (DIWG
-(https://wiki.earthdata.nasa.gov/display/ESDSWG/Dataset+Interoperability+Working+Group)),
-though our interest extends beyond NASA datasets. Taken together, NCO's
-features (autoconversion to netCDF3 atomic types, fixing multiple record
-dimensions, autosensing HDF4 input, scoping rules for CF conventions)
-make 'ncdismember' reliable and friendly for both dismembering
-hierarchical files and for CF-compliance checks. Most HDF4 and HDF5
-datasets can be checked for CF-compliance with a one-line command.
-Example compliance checks of common NASA datasets are at
-<http://dust.ess.uci.edu/diwg>. Our long-term goal is to enrich the
-hierarchical data model with the expressivity and syntactic power of CF
-conventions.
-
- NASA asked the DIWG to prepare a one-page summary of the procedure
-necessary to check HDF files for CF-compliance:
- cat > ~/ncdismember.txt << 'EOF'
- Preparing an RPM-based OS to Test HDF & netCDF Files for CF-Compliance
-
- By Charlie Zender, UCI & NASA Dataset Interoperability Working Group (DIWG)
-
- Installation Summary:
- 1. HDF4 [with internal netCDF support _disabled_]
- 2. HDF5
- 3. netCDF [with external HDF4 support _enabled_]
- 4. NCO
- 5. numpy
- 6. netcdf4-python
- 7. python-lxml
- 8. CFunits-python
- 9. CFChecker
- 10. ncdismember
-
- All 10 packages can use default installs _except_ HDF4 and netCDF.
- Following instructions for Fedora Core 20 (FC20), an RPM-based Linux OS
- Feedback and changes for other Linux-based OS's welcome to zender at uci.edu
- ${H4DIR}, ${H5DIR}, ${NETCDFDIR}, ${NCODIR}, may all be different
- For simplicity CZ sets them all to /usr/local
-
- # 1. HDF4. Build in non-default manner. Turn-off its own netCDF support.
- # Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
- # HDF4 support not necessary though it makes ncdismember more comprehensive
- wget -c http://www.hdfgroup.org/ftp/HDF/HDF_Current/src/hdf-4.2.9.tar.gz
- tar xvzf hdf-4.2.9.tar.gz
- cd hdf-4.2.9
- ./configure --enable-shared --disable-netcdf --disable-fortran --prefix=${H4DIR}
- make && make check && make install
-
- # 2. HDF5. Build normally. RPM may work too. Please let me know if so.
- # HDF5 is a necessary pre-requisite for netCDF4
- wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.11.tar.gz
- tar xvzf hdf5-1.8.11.tar.gz
- cd hdf5-1.8.11
- ./configure --enable-shared --prefix=${H5DIR}
- make && make check && make install
-
- # 3. netCDF version 4.3.1 or later. Build in non-default manner with HDF4.
- # Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
- # Earlier versions of netCDF may fail checking some HDF4 files
- wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.2.tar.gz
- tar xvzf netcdf-4.3.2.tar.gz
- cd netcdf-4.3.2
- CPPFLAGS="-I${H5DIR}/include -I${H4DIR}/include" \
- LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
- ./configure --enable-hdf4 --enable-hdf4-file-tests
- make && make check && make install
-
- # 4. NCO version 4.4.0 or later. Some RPMs available. Or install by hand.
- # Later versions of NCO have much better support for ncdismember
- wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
- tar xvzf nco-4.4.4.tar.gz
- cd nco-4.4.4
- ./configure --prefix=${NCODIR}
- make && make install
-
- # 5. numpy
- sudo yum install numpy -y
-
- # 6. netcdf4-python
- sudo yum install netcdf4-python -y
-
- # 7. python-lxml
- sudo yum install python-lxml -y
-
- # 8. CFunits-python. No RPM available. Must install by hand.
- # http://code.google.com/p/cfunits-python/
- wget http://cfunits-python.googlecode.com/files/cfunits-0.9.6.tar.gz .
- tar xvzf cfunits-0.9.6.tar.gz
- cd cfunits-0.9.6
- sudo python setup.py install
-
- # 9. CFChecker. No RPM available. Must install by hand.
- # https://bitbucket.org/mde_/cfchecker
- wget https://bitbucket.org/mde_/cfchecker/downloads/CFchecker-1.5.15.tar.bz2 .
- tar xvjf CFchecker-1.5.15.tar.bz2
- cd CFchecker
- sudo python setup.py install
-
- # 10. ncdismember. Copy script from http://nco.sf.net/nco.html#ncdismember
- # Store dismembered files somewhere, e.g., ${DATA}/nco/tmp/hdf
- mkdir -p ${DATA}/nco/tmp/hdf
- # Many datasets work with a simpler command...
- ncdismember ~/nco/data/in.nc ${DATA}/nco/tmp/hdf cf 1.5
- ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp/hdf cf 1.5
- ncdismember ${DATA}/hdf/AMSR_E_L2_Rain_V10_200905312326_A.hdf \
- ${DATA}/nco/tmp/hdf cf 1.5
- ncdismember ${DATA}/hdf/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5
- ncdismember ${DATA}/hdf/HIRDLS-Aura_L3ZAD_v06-00-00-c02_2005d022-2008d077.he5 ${DATA}/nco/tmp/hdf cf 1.5
- # Some datasets, typically .h5, require the --fix_rec_dmn=all argument
- ncdismember_${DATA}/hdf/GATMO_npp_d20100906_t1935191_e1935505_b00012_c20110707155932065809_noaa_ops.h5 ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
- ncdismember ${DATA}/hdf/mabel_l2_20130927t201800_008_1.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
- EOF
- A PDF version of these instructions is available here
-(http://dust.ess.uci.edu/diwg/ncdismember.pdf).
-
- ---------- Footnotes ----------
-
- (1) CFchecker is developed by Michael Decker and Martin Schultz at
-Forschungszentrum Ju"lich and distributed at
-<https://bitbucket.org/mde_/cfchecker>.
-
-3.14 C and Fortran Index conventions
-====================================
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-F'
-Long options: '--fortran'
- The '-F' switch changes NCO to read and write with the Fortran index
-convention. By default, NCO uses C-style (0-based) indices for all I/O.
-In C, indices count from 0 (rather than 1), and dimensions are ordered
-from slowest (inner-most) to fastest (outer-most) varying. In Fortran,
-indices count from 1 (rather than 0), and dimensions are ordered from
-fastest (inner-most) to slowest (outer-most) varying. Hence C and
-Fortran data storage conventions represent mathematical transposes of
-eachother. Note that record variables contain the record dimension as
-the most slowly varying dimension. See *note ncpdq netCDF Permute
-Dimensions Quickly:: for techniques to re-order (including transpose)
-dimensions and to reverse data storage order.
-
- Consider a file '85.nc' containing 12 months of data in the record
-dimension 'time'. The following hyperslab operations produce identical
-results, a June-July-August average of the data:
- ncra -d time,5,7 85.nc 85_JJA.nc
- ncra -F -d time,6,8 85.nc 85_JJA.nc
-
- Printing variable THREE_DMN_VAR in file 'in.nc' first with the C indexing
-convention, then with Fortran indexing convention results in the
-following output formats:
- % ncks -v three_dmn_var in.nc
- lat[0]=-90 lev[0]=1000 lon[0]=-180 three_dmn_var[0]=0
- ...
- % ncks -F -v three_dmn_var in.nc
- lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
- ...
-
-3.15 Hyperslabs
-===============
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'
-Long options: '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]',
-'--dmn DIM,[MIN][,[MAX][,[STRIDE]]]'
- A "hyperslab" is a subset of a variable's data. The coordinates of a
-hyperslab are specified with the '-d DIM,[MIN][,[MAX][,[STRIDE]]]' short
-option (or with the same arguments to the '--dimension' or '--dmn' long
-options). At least one hyperslab argument (MIN, MAX, or STRIDE) must be
-present. The bounds of the hyperslab to be extracted are specified by
-the associated MIN and MAX values. A half-open range is specified by
-omitting either the MIN or MAX parameter. The separating comma must be
-present to indicate the omission of one of these arguments. The
-unspecified limit is interpreted as the maximum or minimum value in the
-unspecified direction. A cross-section at a specific coordinate is
-extracted by specifying only the MIN limit and omitting a trailing
-comma. Dimensions not mentioned are passed with no reduction in range.
-The dimensionality of variables is not reduced (in the case of a
-cross-section, the size of the constant dimension will be one).
- # First and second longitudes
- ncks -F -d lon,1,2 in.nc out.nc
- # Second and third longitudes
- ncks -d lon,1,2 in.nc out.nc
-
- As of version 4.2.1 (August, 2012), NCO allows one to extract the
-last N elements of a hyperslab. Negative integers as MIN or MAX
-elements of a hyperslab specification indicate offsets from the end
-(Python also uses this convention). Consistent with this convention,
-the value '-1' (negative one) indicates the last element of a dimension,
-and negative zero is algebraically equivalent to zero and so indicates
-the first element of a dimension. Previously, for example, '-d
-time,-2,-1' caused a domain error. Now it means select the penultimate
-and last timesteps, independent of the size of the 'time' dimension.
-Select only the first and last timesteps, respectively, with '-d time,0'
-and '-d time,-1'. Negative integers work for MIN and MAX indices,
-though not for STRIDE.
- # Second through penultimate longitudes
- ncks -d lon,1,-2 in.nc out.nc
- # Second through last longitude
- ncks -d lon,1,-1 in.nc out.nc
- # Second-to-last to last longitude
- ncks -d lon,-3,-1 in.nc out.nc
- # Second-to-last to last longitude
- ncks -d lon,-3, in.nc out.nc
-The '-F' argument, if any, applies the Fortran index convention only to
-indices specified as positive integers:
- # First through penultimate longitudes
- ncks -F -d lon,1,-2 in.nc out.nc (-F affects only start index)
- # First through last longitude
- ncks -F -d lon,1,-1 in.nc out.nc
- # Second-to-last to penultimate longitude (-F has no effect)
- ncks -F -d lon,-3,-1 in.nc out.nc
- # Second-to-last to last longitude (-F has no effect)
- ncks -F -d lon,-3, in.nc out.nc
-
- Coordinate values should be specified using real notation with a
-decimal point required in the value, whereas dimension indices are
-specified using integer notation without a decimal point. This
-convention serves only to differentiate coordinate values from dimension
-indices. It is independent of the type of any netCDF coordinate
-variables. For a given dimension, the specified limits must both be
-coordinate values (with decimal points) or dimension indices (no decimal
-points).
-
- If values of a coordinate-variable are used to specify a range or
-cross-section, then the coordinate variable must be monotonic (values
-either increasing or decreasing). In this case, command-line values
-need not exactly match coordinate values for the specified dimension.
-Ranges are determined by seeking the first coordinate value to occur in
-the closed range [MIN,MAX] and including all subsequent values until one
-falls outside the range. The coordinate value for a cross-section is
-the coordinate-variable value closest to the specified value and must
-lie within the range or coordinate-variable values. The STRIDE
-argument, if any, must be a dimension index, not a coordinate value.
-*Note Stride::, for more information on the STRIDE option.
- # All longitude values between 1 and 2 degrees
- ncks -d lon,1.0,2.0 in.nc out.nc
- # All longitude values between 1 and 2 degrees
- ncks -F -d lon,1.0,2.0 in.nc out.nc
- # Every other longitude value between 0 and 90 degrees
- ncks -F -d lon,0.0,90.0,2 in.nc out.nc
- As shown, we recommend using a full floating point suffix of '.0'
-instead of simply '.' in order to make obvious the selection of
-hyperslab elements based on coordinate value rather than index.
-
- User-specified coordinate limits are promoted to double-precision
-values while searching for the indices which bracket the range. Thus,
-hyperslabs on coordinates of type 'NC_CHAR' are computed numerically
-rather than lexically, so the results are unpredictable.
-
- The relative magnitude of MIN and MAX indicate to the operator
-whether to expect a "wrapped coordinate" (*note Wrapped Coordinates::),
-such as longitude. If MIN > MAX, the NCO expects the coordinate to be
-wrapped, and a warning message will be printed. When this occurs, NCO
-selects all values outside the domain [MAX < MIN], i.e., all the values
-exclusive of the values which would have been selected if MIN and MAX
-were swapped. If this seems confusing, test your command on just the
-coordinate variables with 'ncks', and then examine the output to ensure
-NCO selected the hyperslab you expected (coordinate wrapping is
-currently only supported by 'ncks').
-
- Because of the way wrapped coordinates are interpreted, it is very
-important to make sure you always specify hyperslabs in the
-monotonically increasing sense, i.e., MIN < MAX (even if the underlying
-coordinate variable is monotonically decreasing). The only exception to
-this is when you are indeed specifying a wrapped coordinate. The
-distinction is crucial to understand because the points selected by,
-e.g., '-d longitude,50.,340.', are exactly the complement of the points
-selected by '-d longitude,340.,50.'.
-
- Not specifying any hyperslab option is equivalent to specifying full
-ranges of all dimensions. This option may be specified more than once
-in a single command (each hyperslabbed dimension requires its own '-d'
-option).
-
-3.16 Stride
-===========
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'
-Long options: '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]',
-'--dmn DIM,[MIN][,[MAX][,[STRIDE]]]'
- All data operators support specifying a "stride" for any and all
-dimensions at the same time. The STRIDE is the spacing between
-consecutive points in a hyperslab. A STRIDE of 1 picks all the elements
-of the hyperslab, and a STRIDE of 2 skips every other element, etc..
-'ncks' multislabs support strides, and are more powerful than the
-regular hyperslabs supported by the other operators (*note
-Multislabs::). Using the STRIDE option for the record dimension with
-'ncra' and 'ncrcat' makes it possible, for instance, to average or
-concatenate regular intervals across multi-file input data sets.
-
- The STRIDE is specified as the optional fourth argument to the '-d'
-hyperslab specification: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'. Specify
-STRIDE as an integer (i.e., no decimal point) following the third comma
-in the '-d' argument. There is no default value for STRIDE. Thus using
-'-d time,,,2' is valid but '-d time,,,2.0' and '-d time,,,' are not.
-When STRIDE is specified but MIN is not, there is an ambiguity as to
-whether the extracted hyperslab should begin with (using C-style,
-0-based indexes) element 0 or element 'stride-1'. NCO must resolve this
-ambiguity and it chooses element 0 as the first element of the hyperslab
-when MIN is not specified. Thus '-d time,,,STRIDE' is syntactically
-equivalent to '-d time,0,,STRIDE'. This means, for example, that
-specifying the operation '-d time,,,2' on the array '1,2,3,4,5' selects
-the hyperslab '1,3,5'. To obtain the hyperslab '2,4' instead, simply
-explicitly specify the starting index as 1, i.e., '-d time,1,,2'.
-
- For example, consider a file '8501_8912.nc' which contains 60
-consecutive months of data. Say you wish to obtain just the March data
-from this file. Using 0-based subscripts (*note C and Fortran Index
-Conventions::) these data are stored in records 2, 14, ... 50 so the
-desired STRIDE is 12. Without the STRIDE option, the procedure is very
-awkward. One could use 'ncks' five times and then use 'ncrcat' to
-concatenate the resulting files together:
- for idx in 02 14 26 38 50; do # Bourne Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
- done
- foreach idx (02 14 26 38 50) # C Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
- end
- ncrcat foo.?? 8589_03.nc
- rm foo.??
- With the STRIDE option, 'ncks' performs this hyperslab extraction in
-one operation:
- ncks -d time,2,,12 8501_8912.nc 8589_03.nc
- *Note ncks netCDF Kitchen Sink::, for more information on 'ncks'.
-
- Applying the STRIDE option to the record dimension in 'ncra' and
-'ncrcat' makes it possible, for instance, to average or concatenate
-regular intervals across multi-file input data sets.
- ncra -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8589_03.nc
- ncrcat -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8503_8903.nc
-
-3.17 Record Appending
-=====================
-
-Availability: 'ncra', 'ncrcat'
-Short options: None
-Long options: '--rec_apn', '--record_append'
- As of version 4.2.6 (March, 2013), NCO allows both Multi-File,
-Multi-Record operators ('ncra' and 'ncrcat') to append their output
-directly to the end of an existing file. This feature may be used to
-augment a target file, rather than construct it from scratch. This
-helps, for example, when a timeseries is concatenated from input data
-that becomes available in stages rather than all at once. In such cases
-this switch significantly speeds writing.
-
- Consider the use case where one wishes to preserve the contents of
-'fl_1.nc', and add to them new records contained in 'fl_2.nc'.
-Previously the output had to be placed in a third file, 'fl_3.nc' (which
-could also safely be named 'fl_2.nc'), via
- ncrcat -O fl_1.nc fl_2.nc fl_3.nc
- Under the hood this operation copies all information in 'fl_1.nc' and
-'fl_2.nc' not once but twice. The first copy is performed through the
-netCDF interface, as all data from 'fl_1.nc' and 'fl_2.nc' are extracted
-and placed in the output file. The second copy occurs (usually much)
-more quickly as the (by default) temporary output file is copied
-(sometimes a quick re-link suffices) to the final output file (*note
-Temporary Output Files::). All this copying is expensive for large
-files.
-
- The '--record_append' switch appends all records in 'fl_2.nc' to the
-end (after the last record) of 'fl_1.nc':
- ncrcat --rec_apn fl_2.nc fl_1.nc
- The ordering of the filename arguments may seem non-intuitive. If
-the record variable represents time in these files, then the values in
-'fl_1.nc' precede those in 'fl_2.nc', so why do the files appear in the
-reverse order on the command line? 'fl_1.nc' is the last file named
-because it is the pre-existing output file to which we will append all
-the other input files listed (in this case only 'fl_2.nc'). The
-contents of 'fl_1.nc' are completely preserved, and only values in
-'fl_2.nc' (and any other input files) are copied. This switch avoids
-the necessity of copying all of 'fl_1.nc' through the netCDF interface
-to a new output file. The '--rec_apn' switch automatically puts NCO
-into append mode (*note Appending Variables::), so specifying '-A' is
-redundant, and simultaneously specifying overwrite mode with '-O' causes
-an error. By default, NCO works in an intermediate temporary file.
-Power users may combine '--rec_apn' with the '--no_tmp_fl' switch (*note
-Temporary Output Files::):
- ncrcat --rec_apn --no_tmp_fl fl_2.nc fl_1.nc
- This avoids creating an intermediate file, and copies only the
-minimal amount of data (i.e., all of 'fl_2.nc'). Hence, it is fast. We
-recommend users try to understand the safety trade-offs involved.
-
-3.18 Subcycle
-=============
-
-Availability: 'ncra', 'ncrcat'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE][,[SUBCYCLE]]]]'
-Long options: '--mro' '--dimension
-DIM,[MIN][,[MAX][,[STRIDE][,[SUBCYCLE]]]]'
-'--dmn DIM,[MIN][,[MAX][,[STRIDE][,[SUBCYCLE]]]]'
- As of version 4.2.1 (August, 2012), NCO allows both Multi-File,
-Multi-Record operators, 'ncra' and 'ncrcat', to extract and operate on
-multiple groups of records. These groups may be connected to physical
-_sub-cycles_ of a periodic nature, e.g., months of a year, or hours of a
-day. Or they may be thought of as groups of a specifed duration. The
-feature and the terminology to describe it are new. For now, we call
-this the "subcycle feature", sometimes abbreviated SSC (1).
-
- The subcycle feature allows processing of groups of records separated
-by regular intervals of records. It is perhaps best illustrated by an
-extended example which describes how to solve the same problem both with
-and without the SSC feature.
-
- The first task in climate data processing is often creating seasonal
-cycles. Suppose a 150-year climate simulation produces 150 output
-files, each comprising 12 records, each record a monthly mean:
-'1850.nc', '1851.nc', ... '1999.nc'. Our goal is to create a single
-file containing the summertime (June, July, and August, aka JJA) mean.
-Traditionally, we would first compute the climatological monthly mean
-for each month of summer. Each of these is a 150-year mean, i.e.,
- # Step 1: Create climatological monthly files clm06.nc..clm08.nc
- for mth in {6..8}; do
- mm=`printf "%02d" $mth`
- ncra -O -F -d time,${mm},,12 -n 150,4,1 1850.nc clm${mm}.nc
- done
- # Step 2: Average climatological monthly files into summertime mean
- ncra -O clm06 clm07.nc clm08.nc clm_JJA.nc
-So far, nothing is unusual and this task can be performed by any NCO
-version. The SSC feature makes obsolete the need for the shell loop
-used in Step 1 above.
-
- The new SSC option aggregates more than one input record at a time
-before performing arithmetic operations, and, with an additional switch,
-allows us to archive those results in multiple record output (MRO)
-files. This reduces the task of producing the climatological summertime
-mean to one step:
- # Step 1: Compute climatological summertime mean
- ncra -O -F -d time,6,,12,3 -n 150,4,1 1850.nc clm_JJA.nc
-The SSC option instructs 'ncra' (or 'ncrcat') to process files in groups
-of three records. To better understand the meaning of each argument to
-the '-d' hyperslab option, read it this way: "for the time dimension
-start with the sixth record, continue without end, repeat the process
-every twelfth record, and define a sub-cycle as three consecutive
-records".
-
- A separate option, '--mro', instructs 'ncra' to output its results
-from each sub-group, and to produce a "Multi-Record Output" (MRO) file
-rather than a "Single-Record Output" (SRO) file. Unless '--mro' is
-specified, 'ncra' collects together all the sub-groups, operates on
-their ensemble, and produces a single output record. The addition of
-'--mro' to the above example causes 'ncra' to archive all (150) annual
-summertime means to one file:
- # Step 1: Archive all 150 summertime means in one file
- ncra --mro -O -F -d time,6,,12,3 -n 150,4,1 1850.nc 1850_2009_JJA.nc
- # ...or all (150) annual means...
- ncra --mro -O -d time,,,12,12 -n 150,4,1 1850.nc 1850_2009.nc
-These operations generate and require no intermediate files. This
-contrasts to previous NCO methods, which require generating, averaging,
-then catenating 150 files. The '--mro' option has no effect on, or
-rather is redundant for, 'ncrcat' since 'ncrcat' always outputs all
-selected records.
-
- ---------- Footnotes ----------
-
- (1) When originally released in 2012 this was called the "duration
-feature", and was abbreviated DRN.
-
-3.19 Multislabs
-===============
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'
-Long options: '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]',
-'--dmn DIM,[MIN][,[MAX][,[STRIDE]]]'
-'--msa_usr_rdr', '--msa_user_order'
- A multislab is a union of one or more hyperslabs. One defines
-multislabs by chaining together hyperslab commands, i.e., '-d' options
-(*note Hyperslabs::). Support for specifying a "multi-hyperslab" or
-"multislab" for any variable was first added to 'ncks' in late 2002.
-The other operators received these capabilities in April 2008.
-Multi-slabbing is often referred to by the acronym MSA, which stands for
-"Multi-Slabbing Algorithm". As explained below, the user may
-additionally request that the multislabs be returned in the
-user-specified order, rather than the on-disk storage order. Although
-MSA user-ordering has been available in all operators since 2008, most
-users were unaware of it since the documentation (below, and in the man
-pages) was not written until July 2013.
-
- Multislabs overcome many restraints that limit simple hyperslabs. A single
-'-d' option can only specify a contiguous and/or a regularly spaced
-multi-dimensional data array. Multislabs are constructed from multiple
-'-d' options and may therefore have non-regularly spaced arrays. For
-example, suppose it is desired to operate on all longitudes from 10.0 to
-20.0 and from 80.0 to 90.0 degrees. The combined range of longitudes is
-not selectable in a single hyperslab specfication of the form '-d
-DIMENSION,MIN,MAX' or '-d DIMENSION,MIN,MAX,STRIDE' because its elements
-are irregularly spaced in coordinate space (and presumably in index
-space too). The multislab specification for obtaining these values is
-simply the union of the hyperslabs specifications that comprise the
-multislab, i.e.,
- ncks -d lon,10.,20. -d lon,80.,90. in.nc out.nc
- ncks -d lon,10.,15. -d lon,15.,20. -d lon,80.,90. in.nc out.nc
-Any number of hyperslabs specifications may be chained together to
-specify the multislab. MSA creates an output dimension equal in size to
-the sum of the sizes of the multislabs. This can be used to extend and
-or pad coordinate grids.
-
- Users may specify redundant ranges of indices in a multislab, e.g.,
- ncks -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-This command retrieves the first five longitudes, and then every other
-longitude value up to the tenth. Elements 0, 2, and 4 are specified by
-both hyperslab arguments (hence this is redundant) but will count only
-once if an arithmetic operation is being performed. This example uses
-index-based (not coordinate-based) multislabs because the STRIDE option
-only supports index-based hyper-slabbing. *Note Stride::, for more
-information on the STRIDE option.
-
- Multislabs are more efficient than the alternative of sequentially
-performing hyperslab operations and concatenating the results. This is
-because NCO employs a novel multislab algorithm to minimize the number
-of I/O operations when retrieving irregularly spaced data from disk.
-The NCO multislab algorithm retrieves each element from disk once and
-only once. Thus users may take some shortcuts in specifying multislabs
-and the algorithm will obtain the intended values. Specifying redundant
-ranges is not encouraged, but may be useful on occasion and will not
-result in unintended consequences.
-
- Suppose the Q variable contains three dimensional arrays of distinct
-chemical constituents in no particular order. We are interested in the
-NOy species in a certain geographic range. Say that NO, NO2, and N2O5
-are elements 0, 1, and 5 of the SPECIES dimension of Q. The multislab
-specification might look something like
- ncks -d species,0,1 -d species,5 -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-Multislabs are powerful because they may be specified for every
-dimension at the same time. Thus multislabs obsolete the need to
-execute multiple 'ncks' commands to gather the desired range of data.
-
- The MSA user-order switch '--msa_usr_rdr' (or '--msa_user_order',
-both of which shorten to '--msa') requests that the multislabs be output
-in the user-specified order from the command-line, rather than in the
-input-file on-disk storage order. This allows the user to perform
-complex data re-ordering in one operation that would otherwise require
-cumbersome steps of hyperslabbing, concatenating, and permuting.
-Consider the recent example of a user who needed to convert datasets
-stored with the longitude coordinate 'Lon' ranging from [-180,180) to
-datasets that follow the [0,360) convention.
- % ncks -H -v Lon in.nc
- Lon[0]=-180
- Lon[1]=-90
- Lon[2]=0
- Lon[3]=90
-Although simple in theory, this task requires both mathematics to change
-the numerical value of the longitude coordinate, data hyperslabbing to
-split the input on-disk arrays at Greenwich, and data re-ordering within
-to stitch the western hemisphere onto the eastern hemisphere at the
-date-line. The '--msa' user-order switch overrides the default that
-data are output in the same order in which they are stored on-disk in
-the input file, and instead stores them in the same order as the
-multi-slabs are given to the command line. This default is intuitive
-and is not important in most uses. However, the MSA user-order switch
-allows users to meet their output order needs by specifying multi-slabs
-in a certain order. Compare the results of default ordering to
-user-ordering for longitude:
- % ncks -O -H -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
- Lon[0]=-180
- Lon[1]=-90
- Lon[2]=0
- Lon[3]=90
- % ncks -O -H --msa -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
- Lon[0]=0
- Lon[1]=90
- Lon[2]=-180
- Lon[3]=-90
-The two multi-slabs are the same but they can be presented to screen, or
-to an output file, in either order. The second example shows how to
-place the western hemisphere after the eastern hemisphere, although they
-are stored in the opposite order in the input file.
-
- With this background, one sees that the following commands suffice to
-rotate the input file by 180 degrees longitude:
- % ncks -O -v LatLon --msa -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc out.nc
- % ncap2 -O -s 'where(Lon < 0) Lon=Lon+360' out.nc out.nc
- % ncks -C -H -v LatLon ~/nco/data/in.nc
- Lat[0]=-45 Lon[0]=-180 LatLon[0]=0
- Lat[0]=-45 Lon[1]=-90 LatLon[1]=1
- Lat[0]=-45 Lon[2]=0 LatLon[2]=2
- Lat[0]=-45 Lon[3]=90 LatLon[3]=3
- Lat[1]=45 Lon[0]=-180 LatLon[4]=4
- Lat[1]=45 Lon[1]=-90 LatLon[5]=5
- Lat[1]=45 Lon[2]=0 LatLon[6]=6
- Lat[1]=45 Lon[3]=90 LatLon[7]=7
- % ncks -C -H -v LatLon ~/out.nc
- Lat[0]=-45 Lon[0]=0 LatLon[0]=2
- Lat[0]=-45 Lon[1]=90 LatLon[1]=3
- Lat[0]=-45 Lon[2]=180 LatLon[2]=0
- Lat[0]=-45 Lon[3]=270 LatLon[3]=1
- Lat[1]=45 Lon[0]=0 LatLon[4]=6
- Lat[1]=45 Lon[1]=90 LatLon[5]=7
- Lat[1]=45 Lon[2]=180 LatLon[6]=4
- Lat[1]=45 Lon[3]=270 LatLon[7]=5
-There are other workable, valid methods to accomplish this rotation, yet
-none are simpler nor more efficient than utilizing MSA user-ordering.
-Some final comments on applying this algorithm: Be careful to specify
-hemispheres that do not overlap, e.g., by inadvertently specifying
-coordinate ranges that both include Greenwich. Some users will find
-using index-based rather than coordinate-based hyperslabs makes this
-clearer.
-
-3.20 Wrapped Coordinates
-========================
-
-Availability: 'ncks'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'
-Long options: '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]',
-'--dmn DIM,[MIN][,[MAX][,[STRIDE]]]'
- A "wrapped coordinate" is a coordinate whose values increase or
-decrease monotonically (nothing unusual so far), but which represents a
-dimension that ends where it begins (i.e., wraps around on itself).
-Longitude (i.e., degrees on a circle) is a familiar example of a wrapped
-coordinate. Longitude increases to the East of Greenwich, England,
-where it is defined to be zero. Halfway around the globe, the longitude
-is 180 degrees East (or West). Continuing eastward, longitude increases
-to 360 degrees East at Greenwich. The longitude values of most
-geophysical data are either in the range [0,360), or [-180,180). In
-either case, the Westernmost and Easternmost longitudes are numerically
-separated by 360 degrees, but represent contiguous regions on the globe.
-For example, the Saharan desert stretches from roughly 340 to 50 degrees
-East. Extracting the hyperslab of data representing the Sahara from a
-global dataset presents special problems when the global dataset is
-stored consecutively in longitude from 0 to 360 degrees. This is
-because the data for the Sahara will not be contiguous in the INPUT-FILE
-but is expected by the user to be contiguous in the OUTPUT-FILE. In
-this case, 'ncks' must invoke special software routines to assemble the
-desired output hyperslab from multiple reads of the INPUT-FILE.
-
- Assume the domain of the monotonically increasing longitude
-coordinate 'lon' is 0 < LON < 360. 'ncks' will extract a hyperslab
-which crosses the Greenwich meridian simply by specifying the
-westernmost longitude as MIN and the easternmost longitude as MAX. The
-following commands extract a hyperslab containing the Saharan desert:
- ncks -d lon,340.,50. in.nc out.nc
- ncks -d lon,340.,50. -d lat,10.,35. in.nc out.nc
-The first example selects data in the same longitude range as the
-Sahara. The second example further constrains the data to having the
-same latitude as the Sahara. The coordinate 'lon' in the OUTPUT-FILE,
-'out.nc', will no longer be monotonic! The values of 'lon' will be,
-e.g., '340, 350, 0, 10, 20, 30, 40, 50'. This can have serious
-implications should you run 'out.nc' through another operation which
-expects the 'lon' coordinate to be monotonically increasing.
-Fortunately, the chances of this happening are slim, since 'lon' has
-already been hyperslabbed, there should be no reason to hyperslab 'lon'
-again. Should you need to hyperslab 'lon' again, be sure to give
-dimensional indices as the hyperslab arguments, rather than coordinate
-values (*note Hyperslabs::).
-
-3.21 Auxiliary Coordinates
-==========================
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat'
-Short options: '-X LON_MIN,LON_MAX,LAT_MIN,LAT_MAX'
-Long options: '--auxiliary LON_MIN,LON_MAX,LAT_MIN,LAT_MAX'
- Utilize auxiliary coordinates specified in values of the coordinate
-variable's 'standard_name' attributes, if any, when interpreting
-hyperslab and multi-slab options. Also '--auxiliary'. This switch
-supports hyperslabbing cell-based grids over coordinate ranges. This
-works on datasets that associate coordinate variables to grid-mappings
-using the CF-convention (*note CF Conventions::) 'coordinates' and
-'standard_name' attributes described here
-(http://cfconventions.org/1.6.html#coordinate-system). Currently, NCO
-understands auxiliary coordinate variables pointed to by the
-'standard_name' attributes for LATITUDE and LONGITUDE. Cells that
-contain a value within the user-specified range
-[LON_MIN,LON_MAX,LAT_MIN,LAT_MAX] are included in the output hyperslab.
-
- A cell-based grid collapses the horizontal spatial information
-(latitude and longitude) and stores it along a one-dimensional
-coordinate that has a one-to-one mapping to both latitude and longitude
-coordinates. Rectangular (in longitude and latitude) horizontal
-hyperslabs cannot be selected using the typical procedure (*note
-Hyperslabs::) of separately specifying '-d' arguments for longitude and
-latitude. Instead, when the '-X' is used, NCO learns the names of the
-latitude and longitude coordinates by searching the 'standard_name'
-attribute of all variables until it finds the two variables whose
-'standard_name''s are "latitude" and "longitude", respectively. This
-'standard_name' attribute for latitude and longitude coordinates follows
-the CF-convention (*note CF Conventions::).
-
- Putting it all together, consider a variable GDS_3DVAR output from
-simulations on a cell-based geodesic grid. Although the variable
-contains three dimensions of data (time, latitude, and longitude), it is
-stored in the netCDF file with only two dimensions, 'time' and
-'gds_crd'.
- % ncks -m -C -v gds_3dvar ~/nco/data/in.nc
- gds_3dvar: type NC_FLOAT, 2 dimensions, 4 attributes, chunked? no, \
- compressed? no, packed? no, ID = 41
- gds_3dvar RAM size is 10*8*sizeof(NC_FLOAT) = 80*4 = 320 bytes
- gds_3dvar dimension 0: time, size = 10 NC_DOUBLE, dim. ID = 20 \
- (CRD)(REC)
- gds_3dvar dimension 1: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
- gds_3dvar attribute 0: long_name, size = 17 NC_CHAR, value = \
- Geodesic variable
- gds_3dvar attribute 1: units, size = 5 NC_CHAR, value = meter
- gds_3dvar attribute 2: coordinates, size = 15 NC_CHAR, value = \
- lat_gds lon_gds
- gds_3dvar attribute 3: purpose, size = 64 NC_CHAR, value = \
- Test auxiliary coordinates like those that define geodesic grids
- The 'coordinates' attribute lists the names of the latitude and
-longitude coordinates, 'lat_gds' and 'lon_gds', respectively. The
-'coordinates' attribute is recommended though optional. With it, the
-user can immediately identify which variables contain the latitude and
-longitude coordinates. Without a 'coordinates' attribute it would be
-unclear at first glance whether a variable resides on a cell-based grid.
-In this example, 'time' is a normal record dimension and 'gds_crd' is
-the cell-based dimension.
-
- The cell-based grid file must contain two variables whose
-'standard_name' attributes are "latitude", and "longitude":
- % ncks -m -C -v lat_gds,lon_gds ~/nco/data/in.nc
- lat_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 37
- lat_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
- lat_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
- lat_gds attribute 0: long_name, size = 8 NC_CHAR, value = Latitude
- lat_gds attribute 1: standard_name, size = 8 NC_CHAR, value = latitude
- lat_gds attribute 2: units, size = 6 NC_CHAR, value = degree
- lat_gds attribute 3: purpose, size = 62 NC_CHAR, value = \
- 1-D latitude coordinate referred to by geodesic grid variables
-
- lon_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 38
- lon_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
- lon_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
- lon_gds attribute 0: long_name, size = 9 NC_CHAR, value = Longitude
- lon_gds attribute 1: standard_name, size = 9 NC_CHAR, value = longitude
- lon_gds attribute 2: units, size = 6 NC_CHAR, value = degree
- lon_gds attribute 3: purpose, size = 63 NC_CHAR, value = \
- 1-D longitude coordinate referred to by geodesic grid variables
- In this example 'lat_gds' and 'lon_gds' represent the latitude or
-longitude, respectively, of cell-based variables. These coordinates
-(must) have the same single dimension ('gds_crd', in this case) as the
-cell-based variables. And the coordinates must be
-one-dimensional--multidimensional coordinates will not work.
-
- This infrastructure allows NCO to identify, interpret, and process
-(e.g., hyperslab) the variables on cell-based grids as easily as it
-works with regular grids. To time-average all the values between zero
-and 180 degrees longitude and between plus and minus 30 degress
-latitude, we use
- ncra -O -X 0.,180.,-30.,30. -v gds_3dvar in.nc out.nc
- NCO accepts multiple '-X' arguments for cell-based grid multi-slabs,
-just as it accepts multiple '-d' arguments for multi-slabs of regular
-coordinates.
- ncra -O -X 0.,180.,-30.,30. -X 270.,315.,45.,90. in.nc out.nc
- The arguments to '-X' are always interpreted as floating point
-numbers, i.e., as coordinate values rather than dimension indices so
-that these two commands produce identical results
- ncra -X 0.,180.,-30.,30. in.nc out.nc
- ncra -X 0,180,-30,30 in.nc out.nc
- In contrast, arguments to '-d' require decimal places to be
-recognized as coordinates not indices (*note Hyperslabs::). We
-recommend always using decimal points with '-X' arguments to avoid
-confusion.
-
-3.22 UDUnits Support
-====================
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: '-d DIM,[MIN][,[MAX][,[STRIDE]]]'
-Long options: '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]',
-'--dmn DIM,[MIN][,[MAX][,[STRIDE]]]'
- There is more than one way to hyperskin a cat. The UDUnits
-(http://www.unidata.ucar.edu/packages/udunits) package provides a
-library which, if present, NCO uses to translate user-specified physical
-dimensions into the physical dimensions of data stored in netCDF files.
-Unidata provides UDUnits under the same terms as netCDF, so sites should
-install both. Compiling NCO with UDUnits support is currently optional
-but may become required in a future version of NCO.
-
- Two examples suffice to demonstrate the power and convenience of
-UDUnits support. First, consider extraction of a variable containing
-non-record coordinates with physical dimensions stored in MKS units. In
-the following example, the user extracts all wavelengths in the visible
-portion of the spectrum in terms of the units very frequently used in
-visible spectroscopy, microns:
- % ncks -C -H -v wvl -d wvl,"0.4 micron","0.7 micron" in.nc
- wvl[0]=5e-07 meter
-The hyperslab returns the correct values because the WVL variable is
-stored on disk with a length dimension that UDUnits recognizes in the
-'units' attribute. The automagical algorithm that implements this
-functionality is worth describing since understanding it helps one avoid
-some potential pitfalls. First, the user includes the physical units of
-the hyperslab dimensions she supplies, separated by a simple space from
-the numerical values of the hyperslab limits. She encloses each
-coordinate specifications in quotes so that the shell does not break the
-_value-space-unit_ string into separate arguments before passing them to
-NCO. Double quotes ('"foo"') or single quotes (''foo'') are equally
-valid for this purpose. Second, NCO recognizes that units translation
-is requested because each hyperslab argument contains text characters
-and non-initial spaces. Third, NCO determines whether the WVL is
-dimensioned with a coordinate variable that has a 'units' attribute. In
-this case, WVL itself is a coordinate variable. The value of its
-'units' attribute is 'meter'. Thus WVL passes this test so UDUnits
-conversion is attempted. If the coordinate associated with the variable
-does not contain a 'units' attribute, then NCO aborts. Fourth, NCO
-passes the specified and desired dimension strings (microns are
-specified by the user, meters are required by NCO) to the UDUnits
-library. Fifth, the UDUnits library that these dimension are
-commensurate and it returns the appropriate linear scaling factors to
-convert from microns to meters to NCO. If the units are incommensurate
-(i.e., not expressible in the same fundamental MKS units), or are not
-listed in the UDUnits database, then NCO aborts since it cannot
-determine the user's intent. Finally, NCO uses the scaling information
-to convert the user-specified hyperslab limits into the same physical
-dimensions as those of the corresponding cooridinate variable on disk.
-At this point, NCO can perform a coordinate hyperslab using the same
-algorithm as if the user had specified the hyperslab without requesting
-units conversion.
-
- The translation and dimensional innterpretation of time coordinates
-shows a more powerful, and probably more common, UDUnits application.
-In this example, the user prints all data between 4 PM and 7 PM on
-December 8, 1999, from a variable whose time dimension is hours since
-the year 1900:
- % ncks -u -H -C -v time_udunits -d time_udunits,"1999-12-08 \
- 16:00:0.0","1999-12-08 19:00:0.0" in.nc
- time_udunits[1]=876018 hours since 1900-01-01 00:00:0.0
-Here, the user invokes the stride (*note Stride::) capability to obtain
-every other timeslice. This is possible because the UDUnits feature is
-additive, not exclusive--it works in conjunction with all other
-hyperslabbing (*note Hyperslabs::) options and in all operators which
-support hyperslabbing. The following example shows how one might
-average data in a time period spread across multiple input files
- ncra -d time,"1939-09-09 12:00:0.0","1945-05-08 00:00:0.0" \
- in1.nc in2.nc in3.nc out.nc
-Note that there is no excess whitespace before or after the individual
-elements of the '-d' argument. This is important since, as far as the
-shell knows, '-d' takes only _one_ command-line argument. Parsing this
-argument into its component 'DIM,[MIN][,[MAX][,[STRIDE]]]' elements
-(*note Hyperslabs::) is the job of NCO. When unquoted whitespace is
-present between these elements, the shell passes NCO arugment fragments
-which will not parse as intended.
-
- NCO implemented support for the UDUnits2 library with version 3.9.2
-(August, 2007). The UDUnits2
-(http://www.unidata.ucar.edu/software/udunits/udunits-2/udunits2.html)
-package supports non-ASCII characters and logarithmic units. We are
-interested in user-feedback on these features.
-
- One aspect that deserves mention is that UDUnits, and thus NCO,
-supports run-time definition of the location of the relevant UDUnits
-databases. With UDUnits version 1, users may specify the directory
-which contains the UDUnits database, 'udunits.dat', via the
-'UDUNITS_PATH' environment variable. With UDUnits version 2, users may
-specify the UDUnits database file itself, 'udunits2.xml', via the
-'UDUNITS2_XML_PATH' environment variable.
- # UDUnits1
- export UDUNITS_PATH='/unusual/location/share/udunits'
- # UDUnits2
- export UDUNITS2_XML_PATH='/unusual/location/share/udunits/udunits2.xml'
- This run-time flexibility can enable the full functionality of
-pre-built binaries on machines with libraries in different locations.
-
- The UDUnits (http://www.unidata.ucar.edu/packages/udunits) package
-documentation describes the supported formats of time dimensions. Among
-the metadata conventions that adhere to these formats are the Climate
-and Forecast (CF) Conventions (http://cf-pcmdi.llnl.gov) and the
-Cooperative Ocean/Atmosphere Research Data Service (COARDS) Conventions
-(http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html). The
-following '-d arguments' extract the same data using commonly
-encountered time dimension formats:
- -d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
- -d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
- -d time,'1918-11-11T00:00:0.0Z','1939-09-09T00:00:0.0Z'
- -d time,'1918-11-11','1939-09-09'
- -d time,'1918-11-11','1939-9-9'
-All of these formats include at least one dash '-' in a non-leading
-character position (a dash in a leading character position is a negative
-sign). NCO assumes that a space, colon, or non-leading dash in a limit
-string indicates that a UDUnits units conversion is requested. Some
-date formats like YYYYMMDD that are valid in UDUnits are ambiguous to
-NCO because it cannot distinguish a purely numerical date (i.e., no
-dashes or text characters in it) from a coordinate or index value:
- -d time,1918-11-11 # Interpreted as the date November 11, 1918
- -d time,19181111 # Interpreted as time-dimension index 19181111
- -d time,19181111. # Interpreted as time-coordinate value 19181111.0
- Hence, use the YYYY-MM-DD format rather than YYYYMMDD for dates.
-
-As of version 4.0.0 (January, 2010), NCO supports some calendar
-attributes specified by the CF conventions.
-*Supported types:*
- "365_day"/"noleap", "360_day", "gregorian", "standard"
-*Unsupported types:*
- "366_day"/"all_leap","proleptic_gregorian","julian","none"
- Unsupported types default to mixed Gregorian/Julian as defined by
-UDUnits.
-
-An Example: Consider the following netCDF variable
-
- variables:
- double lon_cal(lon_cal) ;
- lon_cal:long_name = "lon_cal" ;
- lon_cal:units = "days since 1964-2-28 0:0:0" ;
- lon_cal:calendar = "365_day" ;
- data:
- lon_cal = 1,2,3,4,5,6,7,8,9,10;
- 'ncks -v lon_cal -d lon_cal,'1964-3-1 0:00:0.0','1964-3-4 00:00:0.0''
-results in 'lon_cal=1,2,3,4'.
-
- netCDF variables should always be stored with MKS (i.e., God's)
-units, so that application programs may assume MKS dimensions apply to
-all input variables. The UDUnits feature is intended to alleviate some
-of the NCO user's pain when handling MKS units. It connects users who
-think in human-friendly units (e.g., miles, millibars, days) to extract
-data which are always stored in God's units, MKS (e.g., meters, Pascals,
-seconds). The feature is not intended to encourage writers to store
-data in esoteric units (e.g., furlongs, pounds per square inch,
-fortnights).
-
-3.23 Rebasing Time Coordinate
-=============================
-
-Availability: 'ncra', 'ncrcat' Short options: None
-
- Time rebasing is invoked when numerous files share a common record
-coordinate, and the record coordinate units change among input files.
-The rebasing is performed automatically if and only if UDUnits is
-installed. Usually rebasing occurs when the recoordinate is a
-time-based variable, and times are recorded in units of a
-time-since-basetime, and the basetime changes from file to file. Since
-the output file can have only one unit (i.e., one basetime) for the
-record coordinate, NCO, in such cases, chooses the units of the first
-input file to be the units of the output file. It is necessary to
-"rebase" all the input record variables to this output time unit in
-order for the output file to have the correct values.
-
- For example suppose the time coordinate is in hours and each day in
-January is stored in its own daily file. Each daily file records the
-temperature variable 'tpt(time)' with an (unadjusted) 'time' coordinate
-value between 0-23 hours, and uses the 'units' attribute to advance the
-base time:
- file01.nc time:units="hours since 1990-1-1"
- file02.nc time:units="hours since 1990-1-2"
- ...
- file31.nc time:units="hours since 1990-1-31"
-
- // Mean noontime temperature in January
- ncra -v tpt -d time,"1990-1-1 12:00:00","1990-1-31 23:59:59",24 \
- file??.nc noon.nc
-
- // Concatenate day2 noon through day3 noon records
- ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file01.nc file02.nc file03.nc noon.nc
-
- // Results: time is "re-based" to the time units in "file01.nc"
- time=36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, \
- 51, 52, 53, 54, 55, 56, 57, 58, 59 ;
-
- // If we repeat the above command but with only two input files...
- ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file02.nc file03 noon.nc
-
- // ...then output time coordinate is based on time units in "file02.nc"
- time = 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, \
- 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 ;
- As of NCO version 4.2.1 (August, 2012), NCO automatically rebases not
-only the record coordinate ('time', here) but also any bounds associated
-with the record coordinate (e.g., 'time_bnds') (*note CF Conventions::).
-
-3.24 Multiple Record Dimensions
-===============================
-
-Availability: 'ncecat', 'ncpdq' Short options: None
-Long options: '--mrd'
- The netCDF3 file format allows only one record dimension, and that
-dimension must be the first dimension (i.e., the least rapidly varying
-dimension) of any variable in which it appears. This imposes certain
-rules on how operators must perform operations that alter the ordering
-of dimensions or the number of record variables. The netCDF4 file
-format has no such restrictions. Files and variables may have any
-number of record dimensions in any order. This additional flexibility
-of netCDF4 can only be realized by selectively abandoning the
-constraints that would make operations behave completely consistently
-between netCDF3 and netCDF4 files.
-
- NCO chooses, by default, to impose netCDF3-based constraints on
-netCDF4 files. This reduces the number of unanticipated consequences
-and keeps the operators functioning in a familiar way. Put another way,
-NCO limits production of additional record dimensions so processing
-netCDF4 files leads to the same results as processing netCDF4 files.
-Users can override this default with the '--mrd' (or
-'--multiple_record_dimension') switch, which enables netCDF4 variables
-to accumulate additional record dimensions.
-
- How can additional record dimensions be produced? Most commonly
-'ncecat' (in record-aggregate mode) defines a new leading record
-dimension. In netCDF4 files this becomes an additional record dimension
-unless the original record dimension is changed to a fixed dimension (as
-must be done in netCDF3 files). Also when 'ncpdq' reorders dimensions
-it can preserve the "record" property of record variables. 'ncpdq'
-tries to define as a record dimension whichever dimension ends up first
-in a record variable, and, in netCDF4 files, this becomes an additional
-record dimension unless the original record dimension is changed to a
-fixed dimension (as must be done in netCDF3 files). It it easier if
-'ncpdq' and 'ncecat' do not increase the number of record dimensions in
-a variable so that is the default. Use '--mrd' to override this.
-
-3.25 Missing values
-===================
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncflint', 'ncpdq', 'ncra',
-'ncwa'
-Short options: None
-
- The phrase "missing data" refers to data points that are missing,
-invalid, or for any reason not intended to be arithmetically processed
-in the same fashion as valid data. The NCO arithmetic operators attempt
-to handle missing data in an intelligent fashion. There are four steps
-in the NCO treatment of missing data:
- 1. Identifying variables that may contain missing data.
-
- NCO follows the convention that missing data should be stored with
- the _FILLVALUE specified in the variable's '_FillValue' attributes.
- The _only_ way NCO recognizes that a variable _may_ contain missing
- data is if the variable has a '_FillValue' attribute. In this
- case, any elements of the variable which are numerically equal to
- the _FILLVALUE are treated as missing data.
-
- NCO adopted the behavior that the default attribute name, if any,
- assumed to specify the value of data to ignore is '_FillValue' with
- version 3.9.2 (August, 2007). Prior to that, the 'missing_value'
- attribute, if any, was assumed to specify the value of data to
- ignore. Supporting both of these attributes simultaneously is not
- practical. Hence the behavior NCO once applied to MISSING_VALUE it
- now applies to any _FILLVALUE. NCO now treats any MISSING_VALUE as
- normal data (1).
-
- It has been and remains most advisable to create both '_FillValue'
- and 'missing_value' attributes with identical values in datasets.
- Many legacy datasets contain only 'missing_value' attributes. NCO
- can help migrating datasets between these conventions. One may use
- 'ncrename' (*note ncrename netCDF Renamer::) to rename all
- 'missing_value' attributes to '_FillValue':
- ncrename -a .missing_value,_FillValue inout.nc
- Alternatively, one may use 'ncatted' (*note ncatted netCDF
- Attribute Editor::) to add a '_FillValue' attribute to all
- variables
- ncatted -O -a _FillValue,,o,f,1.0e36 inout.nc
-
- 2. Converting the _FILLVALUE to the type of the variable, if
- neccessary.
-
- Consider a variable VAR of type VAR_TYPE with a '_FillValue'
- attribute of type ATT_TYPE containing the value _FILLVALUE. As a
- guideline, the type of the '_FillValue' attribute should be the
- same as the type of the variable it is attached to. If VAR_TYPE
- equals ATT_TYPE then NCO straightforwardly compares each value of
- VAR to _FILLVALUE to determine which elements of VAR are to be
- treated as missing data. If not, then NCO converts _FILLVALUE from
- ATT_TYPE to VAR_TYPE by using the implicit conversion rules of C,
- or, if ATT_TYPE is 'NC_CHAR' (2), by typecasting the results of the
- C function 'strtod(_FILLVALUE)'. You may use the NCO operator
- 'ncatted' to change the '_FillValue' attribute and all data whose
- data is _FILLVALUE to a new value (*note ncatted netCDF Attribute
- Editor::).
-
- 3. Identifying missing data during arithmetic operations.
-
- When an NCO arithmetic operator processes a variable VAR with a
- '_FillValue' attribute, it compares each value of VAR to _FILLVALUE
- before performing an operation. Note the _FILLVALUE comparison
- imposes a performance penalty on the operator. Arithmetic
- processing of variables which contain the '_FillValue' attribute
- always incurs this penalty, even when none of the data are missing.
- Conversely, arithmetic processing of variables which do not contain
- the '_FillValue' attribute never incurs this penalty. In other
- words, do not attach a '_FillValue' attribute to a variable which
- does not contain missing data. This exhortation can usually be
- obeyed for model generated data, but it may be harder to know in
- advance whether all observational data will be valid or not.
-
- 4. Treatment of any data identified as missing in arithmetic
- operators.
-
- NCO averagers ('ncra', 'nces', 'ncwa') do not count any element
- with the value _FILLVALUE towards the average. 'ncbo' and
- 'ncflint' define a _FILLVALUE result when either of the input
- values is a _FILLVALUE. Sometimes the _FILLVALUE may change from
- file to file in a multi-file operator, e.g., 'ncra'. NCO is
- written to account for this (it always compares a variable to the
- _FILLVALUE assigned to that variable in the current file). Suffice
- it to say that, in all known cases, NCO does "the right thing".
-
- It is impossible to determine and store the correct result of a
- binary operation in a single variable. One such corner case occurs
- when both operands have differing _FILLVALUE attributes, i.e.,
- attributes with different numerical values. Since the output
- (result) of the operation can only have one _FILLVALUE, some
- information may be lost. In this case, NCO always defines the
- output variable to have the same _FILLVALUE as the first input
- variable. Prior to performing the arithmetic operation, all values
- of the second operand equal to the second _FILLVALUE are replaced
- with the first _FILLVALUE. Then the arithmetic operation proceeds
- as normal, comparing each element of each operand to a single
- _FILLVALUE. Comparing each element to two distinct _FILLVALUE's
- would be much slower and would be no likelier to yield a more
- satisfactory answer. In practice, judicious choice of _FILLVALUE
- values prevents any important information from being lost.
-
- ---------- Footnotes ----------
-
- (1) The old functionality, i.e., where the ignored values are
-indicated by 'missing_value' not '_FillValue', may still be selected _at
-NCO build time_ by compiling NCO with the token definition
-'CPPFLAGS='-UNCO_USE_FILL_VALUE''.
-
- (2) For example, the DOE ARM program often uses ATT_TYPE = 'NC_CHAR'
-and _FILLVALUE = '-99999.'.
-
-3.26 Chunking
-=============
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks',
-'ncpdq', 'ncra', 'ncrcat', 'ncwa'
-Short options: none
-Long options: '--cnk_byt CNK_SZ', '--chunk_byte CNK_SZ'
-'--cnk_dmn DMN_NM,CNK_SZ', '--chunk_dimension DMN_NM,CNK_SZ'
-, '--cnk_map CNK_MAP', '--chunk_map CNK_MAP',
-'--cnk_min VAR_SZ', '--chunk_min VAR_SZ',
-'--cnk_plc CNK_PLC', '--chunk_policy CNK_PLC',
-'--cnk_scl CNK_SZ', '--chunk_scalar CNK_SZ'
-
- All netCDF4-enabled NCO operators that define variables support a
-plethora of chunksize options. Chunking can significantly accelerate or
-degrade read/write access to large datasets. Dataset chunking issues
-are described by THG and Unidata here
-(http://www.hdfgroup.org/HDF5/doc/H5.user/Chunking.html), here
-(http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_why_it_matters),
-and here
-(http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes).
-NCO authors are working on generalized algorithms and applications of
-chunking strategies (stay tuned for more in 2015).
-
- The NCO chunking implementation is designed to be flexible. Users
-control four aspects of the chunking implementation. These are the
-"chunking policy", "chunking map", "chunksize", and "minimum chunksize".
-The chunking policy determines _which_ variables to chunk, and the
-chunking map determines how (with what exact sizes) to chunk those
-variables. These are high-level mechanisms that apply to an entire file
-and all variables and dimensions. The chunksize option allows
-per-dimension specification of sizes that will override the selected (or
-default) chunking map.
-
- The VAR_SZ parameter is the minimum size in bytes (not elements) of
-variables to chunk. This threshold is intended to restrict use of
-chunking to variables for which it is efficient. By default this
-minimum variable size for chunking is twice the system blocksize (when
-available) and is 8192 bytes otherwise. Users may set this to any value
-with the '--cnk_min' switch.
-
- The chunking implementation is similar to a hybrid of the 'ncpdq'
-packing policies (*note ncpdq netCDF Permute Dimensions Quickly::) and
-hyperslab specifications (*note Hyperslabs::). Each aspect is intended
-to have a sensible default, so that many users only need to set one
-switch to obtain sensible chunking. Power users can tune chunking with
-the three switches in tandem to obtain optimal performance.
-
- By default, NCO preserves the chunking characteristics of the input
-file in the output file (1). In other words, preserving chunking
-requires no switches or user intervention.
-
- Users specify the desired chunking policy with the '-P' switch (or
-its long option equivalents, '--cnk_plc' and '--chunk_policy') and its
-CNK_PLC argument. As of August, 2014, six chunking policies are
-implemented:
-"Chunk All Variables"
- Definition: Chunk all variables possible. For obvious reasons,
- scalar variables cannot be chunked.
- Alternate invocation: 'ncchunk'
- CNK_PLC key values: 'all', 'cnk_all', 'plc_all'
- Mnemonic: All
-"Chunk Variables with at least Two Dimensions [_default_]"
- Definition: Chunk all variables possible with at least two
- dimensions
- Alternate invocation: none
- CNK_PLC key values: 'g2d', 'cnk_g2d', 'plc_g2d'
- Mnemonic: _G_reater than or equal to _2_ _D_imensions
-"Chunk Variables with at least Three Dimensions"
- Definition: Chunk all variables possible with at least three
- dimensions
- Alternate invocation: none
- CNK_PLC key values: 'g3d', 'cnk_g3d', 'plc_g3d'
- Mnemonic: _G_reater than or equal to _3_ _D_imensions
-"Chunk One-Dimensional Record Variables"
- Definition: Chunk all 1-D record variables
- Alternate invocation: none
- Any specified (with '--cnk_dmn') record dimension chunksizes will
- be applied only to 1-D record variables (and to no other
- variables). Other dimensions may be chunked with their own
- '--cnk_dmn' options that will apply to all variables. CNK_PLC key
- values: 'r1d', 'cnk_r1d', 'plc_r1d'
- Mnemonic: _R_ecord _1_-_D_ variables
-"Chunk Variables Containing Explicitly Chunked Dimensions"
- Definition: Chunk all variables possible that contain at least one
- dimension whose chunksize was explicitly set with the '--cnk_dmn'
- option. Alternate invocation: none
- CNK_PLC key values: 'xpl', 'cnk_xpl', 'plc_xpl'
- Mnemonic: E_XPL_icitly specified dimensions
-"Chunk Variables that are already Chunked"
- Definition: Chunk only variables that are already chunked in the
- input file. When used in conjunction with 'cnk_map=xst' this
- option preserves and copies the chunking parameters from the input
- to the output file. Alternate invocation: none
- CNK_PLC key values: 'xst', 'cnk_xst', 'plc_xst'
- Mnemonic: E_X_i_ST_ing chunked variables
-"Chunk Variables with NCO recommendations"
- Definition: Chunk all variables according to NCO best practices.
- This is a virtual option that ensures the chunking policy is (in
- the subjective opinion of the authors) the best policy for typical
- usage. As of NCO version 4.4.8 (February, 2015), this virtual
- policy implements 'map_rew' for 3-D variables and 'map_lfp' for all
- other variables.
- Alternate invocation: none
- CNK_PLC key values: 'nco', 'cnk_nco', 'plc_nco'
- Mnemonic: _N_et_C_DF_O_perator
-"Unchunking"
- Definition: Unchunk all variables possible. The HDF5 storge layer
- requires that record variables (i.e., variables that contain at
- least one record dimension) must be chunked. Also variables that
- are compressed or use checksums must be chunked. Such variables
- cannot be unchunked.
- Alternate invocation: 'ncunchunk'
- CNK_PLC key values: 'uck', 'cnk_uck', 'plc_uck', 'unchunk'
- Mnemonic: _U_n_C_hun_K_
-Equivalent key values are fully interchangeable. Multiple equivalent
-options are provided to satisfy disparate needs and tastes of NCO users
-working with scripts and from the command line.
-
- The chunking algorithms must know the chunksizes of each dimension of
-each variable to be chunked. The correspondence between the input
-variable shape and the chunksizes is called the "chunking map". The
-user specifies the desired chunking map with the '-M' switch (or its
-long option equivalents, '--cnk_map' and '--chunk_map') and its CNK_MAP
-argument. Eight chunking maps are currently implemented:
-"Chunksize Equals Dimension Size [_default_]"
- Definition: Chunksize defaults to dimension size. Explicitly
- specify chunksizes for particular dimensions with '--cnk_dmn'
- option.
- CNK_MAP key values: 'dmn', 'cnk_dmn', 'map_dmn'
- Mnemonic: _D_i_M_e_N_sion
-"Chunksize Equals Dimension Size except Record Dimension"
- Definition: Chunksize equals dimension size except record dimension
- has size one. Explicitly specify chunksizes for particular
- dimensions with '--cnk_dmn' option.
- CNK_MAP key values: 'rd1', 'cnk_rd1', 'map_rd1'
- Mnemonic: _R_ecord _D_imension size _1_
-"Chunksize Equals Scalar Size Specified"
- Definition: Chunksize for all dimensions is set with the
- '--cnk_scl' option.
- CNK_MAP key values: 'xpl', 'cnk_xpl', 'map_xpl'
- Mnemonic: E_XPL_icitly specified dimensions
-"Chunksize Product Matches Scalar Size Specified"
- Definition: The product of the chunksizes for each variable matches
- (approximately equals) the size specified with the '--cnk_scl'
- option. A dimension of size one is said to be _degenerate_. For a
- variable of rank R (i.e., with R non-degenerate dimensions), the
- chunksize in each non-degenerate dimension is the Rth root of
- CNK_SCL.
- CNK_MAP key values: 'prd', 'cnk_prd', 'map_prd'
- Mnemonic: _PR_o_D_uct
-"Chunksize Lefter Product Matches Scalar Size Specified"
- Definition: The product of the chunksizes for each variable
- (approximately) equals the size specified with the '--cnk_scl'
- option. This is accomplished by using dimension sizes as
- chunksizes for the rightmost (most rapidly varying) dimensions, and
- then "flexing" the chunksize of the leftmost (least rapidly
- varying) dimensions such that the product of all chunksizes matches
- the specified size. All dimensions to the left of and including
- the first record dimension define the left-hand side. This map was
- first proposed by Chris Barker.
- CNK_MAP key values: 'lfp', 'cnk_lfp', 'map_lfp'
- Mnemonic: _L_e_F_ter _P_roduct
-"Chunksize Equals Existing Chunksize"
- Definition: Chunksizes are copied from the input to the output file
- for every variable that is chunked in the input file. Variables
- not chunked in the input file will be chunked with default
- mappings.
- CNK_MAP key values: 'xst', 'cnk_xst', 'map_xst'
- Mnemonic: E_X_i_ST_
-"Chunksize Balances 1D and (N-1)-D Access to N-D Variable"
- Definition: Chunksizes are chosen so that 1-D and ((N-1))-D
- hyperslabs of 3-D variables (e.g., point-timeseries orn
- latitude/longitude surfaces of 3-D fields) both require
- approximately the number of chunks. Hence their access time should
- be balanced. Russ Rew explains the motivation and derivation for
- this strategy here
- (http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes).
- CNK_MAP key values: 'rew', 'cnk_rew', 'map_rew'
- Mnemonic: Russ _REW_
-"Chunksizes use netCDF4 defaults"
- Definition: Chunksizes are determined by the underlying netCDF
- library. All variables selected by the current chunking policy
- have their chunksizes determined by netCDF library defaults. The
- default algorithm netCDF uses to determine chunksizes has changed
- through the years, and thus depends on the netCDF library version.
- This map can be used to reset (portions of) previously chunked
- files to default chunking values.
- CNK_MAP key values: 'nc4', 'cnk_nc4', 'map_nc4'
- Mnemonic: _N_et_C_DF_4_
-"Chunksizes use NCO recommendations"
- Definition: Chunksizes are determined by the currently recommended
- NCO map. This is a virtual option that ensures the chunking map is
- (in the subjective opinion of the authors) the best map for typical
- usage. As of NCO version 4.4.8 (February, 2015), this virtual map
- calls 'map_rew' for 3-D variables and 'map_lfp' for all others.
- CNK_MAP key values: 'nco', 'cnk_nco', 'map_nco'
- Mnemonic: _N_et_C_DF_O_perator
-
-It is possible to combine the above chunking map algorithms with
-user-specified per-dimension (though not per-variable) chunksizes that
-override specific chunksizes determined by the maps above. The user
-specifies the per-dimension chunksizes with the (equivalent) long
-options '--cnk_dmn' or '--chunk_dimension'). The option takes two
-comma-separated arguments, DMN_NM,CNK_SZ, which are the dimension name
-and its chunksize, respectively. The '--cnk_dmn' option may be used as
-many times as necessary.
-
- The default behavior of chunking depends on several factors. As
-mentioned above, when no chunking options are explicitly specified by
-the user, then NCO preserves the chunking characteristics of the input
-file in the output file. This is equivalent to specifying both CNK_PLC
-and CNK_MAP as "existing", i.e., '--cnk_plc=xst --cnk_map=xst'. If
-output netCDF4 files are chunked with the default behavior of the
-netCDF4 library.
-
- When any chunking parameter _except_ 'cnk_plc' or 'cnk_map' is
-specified (such as 'cnk_dmn' or 'cnk_sz_scl'), then the "existing"
-policy and map are retained and the output chunksizes are modified where
-necessary in accord with the user-specified parameter. When 'cnk_map'
-is specified and 'cnk_plc' is not, then NCO picks (what it thinks is)
-the optimal chunking policy. This has always been policy 'map_g2d'.
-When 'cnk_plc' is specified and 'cnk_map' is not, then NCO picks (what
-it thinks is) the optimal chunking map. This has always been map
-'map_rd1'.
-
- To start afresh and return to netCDF4 chunking defaults, select
-'cnk_map=nc4'.
-
- # Simple chunking and unchunking
- ncks -O -4 --cnk_plc=all in.nc out.nc # Chunk in.nc
- ncks -O -4 --cnk_plc=unchunk in.nc out.nc # Unchunk in.nc
-
- # Chunk data then unchunk it, printing informative metadata
- ncks -O -4 -D 4 --cnk_plc=all ~/nco/data/in.nc ~/foo.nc
- ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
-
- # Set total chunksize to 8192 B
- ncks -O -4 -D 4 --cnk_plc=all --cnk_byt=8192 ~/nco/data/in.nc ~/foo.nc
-
- # More complex chunking procedures, with informative metadata
- ncks -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
- ncks -O -4 -D 4 --cnk_scl=8 dstmch90_clm.nc ~/foo.nc
- ncks -O -4 -D 4 --cnk_dmn lat,64 --cnk_dmn lon,128 dstmch90_clm.nc \
- ~/foo.nc
- ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
- ncks -O -4 -D 4 --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-
- # Chunking works with all operators...
- ncap2 -O -4 -D 4 --cnk_scl=8 -S ~/nco/data/ncap2_tst.nco \
- ~/nco/data/in.nc ~/foo.nc
- ncbo -O -4 -D 4 --cnk_scl=8 -p ~/nco/data in.nc in.nc ~/foo.nc
- ncecat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
- ncflint -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
- ncpdq -O -4 -D 4 -P all_new --cnk_scl=8 -L 5 ~/nco/data/in.nc ~/foo.nc
- ncrcat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
- ncwa -O -4 -D 4 -a time --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-
- Chunking policy 'r1d' changes the chunksize of 1-D record variables
-(and no other variables) to that specified (with '--cnk_dmn') chunksize.
-Any specified record dimension chunksizes will be applied to 1-D record
-variables only. Other dimensions may be chunked with their own
-'--cnk_dmn' options that will apply to all variables. For example,
- ncks --cnk_plc=r1d --cnk_dmn=time,1000. in.nc out.nc
- This sets 'time' chunks to 1000 only in 1-D record variables.
-Without the 'r1d' policy, 'time' chunks would change in all variables.
-
- It is appropriate to conclude by informing users about an aspect of
-chunking that may not be expected. Three types of variables are
-_always_ chunked: Record variables, Deflated (compressed) variables, and
-Checksummed variables. Hence all variables that contain a record
-dimension are also chunked (since data must be chunked in all
-dimensions, not just one). Unless otherwise specified by the user, the
-other (fixed, non-record) dimensions of record variables are assigned
-default chunk sizes. The HDF5 layer does all this automatically to
-optimize the on-disk variable/file storage geometry of record variables.
-Do not be surprised to learn that files created without any explicit
-instructions to activate chunking nevertheless contain chunked
-variables.
-
- ---------- Footnotes ----------
-
- (1) This behavior became the default in November 2014 with NCO
-version 4.4.7. Prior versions would always use netCDF default chunking
-in the output file when no NCO chunking switches were activated,
-regardless of the chunking in the input file.
-
-3.27 Compression
-================
-
-Availability: 'ncbo', 'ncecat', 'nces', 'ncflint', 'ncks', 'ncpdq',
-'ncra', 'ncrcat', 'ncwa'
-Short options: None
-Long options: '--ppc VAR1[,VAR2[,...]]=PRC',
-'--precision_preserving_compression VAR1[,VAR2[,...]]=PRC',
-'--quantize VAR1[,VAR2[,...]]=PRC'
-
- NCO implements or accesses four different compression algorithms, the
-standard lossless DEFLATE algorithm and three lossy compression
-algorithms. All four algorithms reduce the on-disk size of a dataset
-while sacrificing no (lossless) or a tolerable amount (lossy) of
-precision. First, NCO can access the lossless DEFLATE algorithm, a
-combination of Lempel-Ziv encoding and Huffman coding, algorithm on any
-netCDF4 dataset (*note Deflation::). Because it is lossless, this
-algorithm re-inflates deflated data to their full original precision.
-This algorithm is accessed via the HDF5 library layer (which itself
-calls the 'zlib' library also used by 'gzip'), and is unavailable with
-netCDF3.
-
- The three lossy compression algorithms are Packing (*note Packed
-data::), and two precision-preserving algorithms. Packing quantizes
-data of a higher precision type into a lower precision type (often
-'NC_SHORT') that thus stores a fewer (though constant) number of bytes
-per value. Packed data almost unpacks into a (much) smaller dynamic
-range than the floating-point data can represent. The type-conversion
-and reduced dynamic range of the data allows packing to eliminate bits
-typically used to store an exponent, thus improving its packing
-efficiency. Packed data also can also be deflated for additional space
-savings.
-
- A limitation of packing is that unpacking data stored as integers
-into the linear range defined by 'scale_factor' and 'add_offset' rapidly
-loses precision outside of a narrow range of floating point values.
-Variables packed as 'NC_SHORT', for example, can represent only about
-64000 discrete values in the range -32768*scale_factor+add_offset to
-32767*scale_factor+add_offset. The precision of packed data equals the
-value of 'scale_factor', and 'scale_factor' is usually chosen to span
-the range of valid data, not to represent the intrinsic precision of the
-variable. In other words, the precision of packed data cannot be
-specified in advance because it depends on the range of values to
-quantize.
-
- NCO implemented the final two lossy compression algorithms in version
-4.4.8 (February, 2015). These are both "Precision-Preserving
-Compression" (PPC) algorithms and since standard terminology for
-precision is remarkably imprecise, so is our nomenclature. The
-operational definition of "significant digit" in our precision
-preserving algorithms is that the exact value, before rounding or
-quantization, is within one-half the value of the decimal place occupied
-by the "Least Significant Digit" (LSD) of the rounded value. For
-example, the value pi = 3.14 correctly represents the exact mathematical
-constant PI to three significant digits because the LSD of the rounded
-value (i.e., 4) is in the one-hundredths digit place, and the difference
-between the exact value and the rounded value is less than one-half of
-one one-hundredth, i.e., (3.14159265358979323844 - 3.14 = 0.00159 <
-0.005).
-
- One PPC algorithm preserves the specified total "Number of Signifcant
-Digits" (NSD) of the value. For example there is only one significant
-digit in the weight of most "eight-hundred pound gorillas" that you will
-encounter, i.e., so NSD=1. This is the most straightforward measure of
-precision, and thus NSD is the default PPC algorithm.
-
- The other PPC algorithm preserves the number of "Decimal Significant
-Digits" (DSD), i.e., the number of significant digits following
-(positive, by convention) or preceding (negative) the decimal point.
-For example, "0.008" and "800" have, respectively, three and negative
-two digits digits following the decimal point, corresponding DSD=3 and
-DSD=-2.
-
- The only justifiable NSD for a given value depends on intrinsic
-accuracy and error characteristics of the model or measurements, and not
-on the units with which the value is stored. The appropriate DSD for a
-given value depends on these intrinsic characteristics and, in addition,
-the units of storage. This is the fundamental difference between the
-NSD and DSD approaches. The eight-hundred pound gorilla always has
-NSD=1 regardless of whether the value is store in pounds or in some
-other unit. DSD corresponding to this weight is DSD=-2 if the value is
-store in pounds, DSD=4 if stored in megapounds.
-
- Users may wish to express the precision to be preserved as either NSD
-or DSD. Invoke PPC with the long option '--ppc var=prc', or give the
-same arguments to the synonyms '--precision_preserving_compression', or
-to '--quantize'. Here VAR is the variable to quantize, and PRC is the
-precision. The default algorithm assumes PRC specifies NSD precision,
-e.g., 'T=2' means NSD=2. Prepend PRC with a decimal point to specify
-DSD precision, e.g., 'T=.2' means DSD=2. NSD precision must be
-specified as a positive integer. DSD precision may be a positive or
-negative integer; and is specified as the negative base 10 logarithm of
-the desired precision, in accord with common usage. For example,
-specifying 'T=.3' or 'T=.-2' tells the DSD algorithm to store only
-enough bits to preserve the value of T rounded to the nearest thousandth
-or hundred, respectively.
-
- Setting VAR to 'default' has the special meaning of applying the
-associated NSD or DSD algorithm to all floating point variables except
-coordinate variables. Variables _not affected_ by 'default' include
-integer and non-numeric atomic types, coordinates, and variables
-mentioned in the 'coordinates' or 'bounds' attribute of any variable.
-NCO applies PPC to coordinate variables only if those variables are
-explicitly specified (i.e., not with the 'default=PRC' mechanism. NCO
-applies PPC to integer-type variables only if those variables are
-explicitly specified (i.e., not with the 'default=PRC', and only if the
-DSD algorithm is invoked with a negative PRC. To prevent PPC from
-applying to certain non-coordinate variables (e.g., 'gridcell_area' or
-'gaussian_weight'), explicitly specify a precision exceeding 7 (for
-'NC_FLOAT') or 15 (for 'NC_DOUBLE') for those variables. Since these
-are the maximum representable precisions in decimal digits, NCO
-_turns-off_ PPC (i.e., does nothing) when more precision is requested.
-
- The time penalty for compressing and uncompressing data varies
-according to the algorithm. The Number of Significant Digit (NSD)
-algorithm quantizes by bitmasking, and employs no floating point math.
-The Decimal Significant Digit (DSD) algorithm quantizes by rounding,
-which does require floating point math. Hence NSD is likely faster than
-DSD, though the difference has not been measured. NSD creates a bitmask
-to alter the "significand" of IEEE 754 floating point data. The bitmask
-is one for all bits to be retained and zero or one for all bits to be
-ignored. The algorithm assumes that the number of binary digits (i.e.,
-bits) necessary to represent a single base-10 digit is ln(10)/ln(2) =
-3.32. The exact numbers of bits NBIT retained for single and double
-precision values are ceil(3.32*NSD)+1 and ceil(3.32*NSD)+2,
-respectively. Once these reach 23 and 53, respectively, bitmasking is
-completely ineffective. This occurs at NSD=6.3 and 15.4, respectively.
-
- The DSD algorithm, by contrast, uses rounding to remove undesired
-precision. The rounding (1) zeroes the greatest number of significand
-bits consistent with the desired precision.
-
- To demonstrate the change in IEEE representation caused by PPC
-rounding algorithms, consider again the case of PI, represented as an
-'NC_FLOAT'. The IEEE 754 single precision representations of the exact
-value (3.141592...), the value with only three significant digits
-treated as exact (3.140000...), and the value as stored (3.140625) after
-PPC-rounding with either the NSD (PRC=3) or DSD (PRC=2) algorithm are,
-respectively,
- S Exponent Fraction (Significand) Decimal Notes
- 0 100000001 0010010000111111011011 # 3.14159265 Exact
- 0 100000001 0010001111010111000011 # 3.14000000
- 0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
- 0 100000001 0010010000000000000000 # 3.14062500 DSD = 2
- The string of trailing zero-bits in the rounded values facilitates
-byte-stream compression. Note that the NSD and DSD algorithms do not
-always produce results that are bit-for-bit identical, although they do
-in this particular case.
-
- Reducing the preserved precision of NSD-rounding produces
-increasingly long strings of identical-bits amenable to compression:
- S Exponent Fraction (Significand) Decimal Notes
- 0 100000001 0010010000111111011011 # 3.14159265 Exact
- 0 100000001 0010010000111111011011 # 3.14159265 NSD = 8
- 0 100000001 0010010000111111011010 # 3.14159262 NSD = 7
- 0 100000001 0010010000111111011000 # 3.14159203 NSD = 6
- 0 100000001 0010010000111111000000 # 3.14158630 NSD = 5
- 0 100000001 0010010000111100000000 # 3.14154053 NSD = 4
- 0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
- 0 100000001 0010010000000000000000 # 3.14062500 NSD = 2
- 0 100000001 0010000000000000000000 # 3.12500000 NSD = 1
- The consumption of about 3 bits per digit of base-10 precision is
-evident, as is the coincidence of a quantized value that greatly exceeds
-the mandated precision for NSD = 2. Although the NSD algorithm
-generally masks some bits for all NSD <= 7 (for 'NC_FLOAT'), compression
-algorithms like DEFLATE may need byte-size-or-greater (i.e., at least
-eight-bit) bit patterns before their algorithms can take advantage of of
-encoding such patterns for compression. Do not expect significantly
-enhanced compression from NSD > 5 (for 'NC_FLOAT') or NSD > 14 (for
-'NC_DOUBLE'). Clearly values stored as 'NC_DOUBLE' (i.e., eight-bytes)
-are susceptible to much greater compression than 'NC_FLOAT' for a given
-precision because their significands explicitly contain 53 bits rather
-than 23 bits.
-
- Maintaining non-biased statistical properties during lossy
-compression requires special attention. The DSD algorithm uses
-'rint()', which rounds toward the nearest even integer. Thus DSD has no
-systematic bias. However, the NSD algorithm uses a bitmask technique
-susceptible to statistical bias. Zeroing all non-significant bits is
-guaranteed to produce numbers quantized to the specified tolerance,
-i.e., half of the decimal value of the position occupied by the LSD.
-However, always zeroing the non-significant bits results in quantized
-numbers that never exceed the exact number. This would produce a
-negative bias in statistical quantities (e.g., the average) subsequently
-derived from the quantized numbers. To avoid this bias, NSD rounds
-non-significant bits down (to zero) or up (to one) in an alternating
-fashion when processing array data. In general, the first element is
-rounded down, the second up, and so on. This results in a mean bias
-quite close to zero. The only exception is that the floating point
-value of zero is never quantized upwards. For simplicity, NSD always
-rounds scalars downwards.
-
- Although NSD or DSD are different algorithms under the hood, they
-both replace the (unwanted) least siginificant bits of the IEEE
-significand with a string of consecutive zeroes. Byte-stream
-compression techniques, such as the 'gzip' DEFLATE algorithm compression
-available in HDF5, always compress zero-strings more efficiently than
-random digits. The net result is netCDF files that utilize compression
-can be significantly reduced in size. This feature only works when the
-data are compressed, either internally (by netCDF) or externally (by
-another user-supplied mechanism). It is most straightfoward to compress
-data internally using the built-in compression and decompression
-supported by netCDF4. For convenience, NCO automatically activates
-file-wide Lempel-Ziv deflation (*note Deflation::) level one (i.e., '-L
-1') when PPC is invoked on any variable in a netCDF4 output file. This
-makes PPC easier to use effectively, since the user need not explicitly
-specify deflation. Any explicitly specified deflation (including no
-deflation, '-L 0') will override the PPC deflation default. If the
-output file is a netCDF3 format, NCO will emit a message suggesting
-internal netCDF4 or external netCDF3 compression. netCDF3 files
-compressed by an external utility such as 'gzip' accrue approximately
-the same benefits (shrinkage) as netCDF4, although with netCDF3 the user
-or provider must uncompress (e.g., 'gunzip') the file before accessing
-the data. There is no benefit to rounding numbers and storing them in
-netCDF3 files unless such custom compression/decompression is employed.
-Without that, one may as well maintain the undesired precision.
-
- The user accesses PPC through a single switch, '--ppc', repeated as
-many times as necessary. To apply the NSD algorithm to variable U use,
-e.g.,
- ncks -7 --ppc u=2 in.nc out.nc
- The output file will preserve only two significant digits of U. The
-options '-4' or '-7' ensure a netCDF4-format output (regardless of the
-input file format) to support internal compression. It is recommended
-though not required to write netCDF4 files after PPC. For clarity the
-'-4/-7' switches are omitted in subsequent examples. NCO attaches
-attributes that indicate the algorithm used and degree of precision
-retained for each variable affected by PPC. The NSD and DSD algorithms
-store the attributes 'number_of_significant_digits' and
-'least_significant_digit' (2), respectively.
-
- It is safe to attempt PPC on input that has already been rounded.
-Variables can be made rounder, not sharper, i.e., variables cannot be
-"un-rounded". Thus PPC attempted on an input variable with an existing
-PPC attribute proceeds only if the new rounding level exceeds the old,
-otherwise no new rounding occurs (i.e., a "no-op"), and the original PPC
-attribute is retained rather than replaced with the newer value of PRC.
-
- To request, say, five significant digits (NSD=5) for all fields,
-except, say, wind speeds which are only known to integer values (DSD=0)
-in the supplied units, requires '--ppc' twice:
- ncks -4 --ppc default=5 --ppc u,v=.0 in.nc out.nc
- To preserve five digits in all variables except coordinate variables
-and U and V, use the 'default' option and separately specify the
-exceptions:
- ncks --ppc default=5 --ppc u,v=20 in.nc out.nc
- The '--ppc' option may be specified any number of times to support
-varying precision types and levels, and each option may aggregate all
-the variables with the same precision
- ncks --ppc p,w,z=5 --ppc q,RH=4 --ppc T,u,v=3 in.nc out.nc
- Any VAR argument may be a regular expression. This simplifies
-generating lists of related variables:
- ncks --ppc Q.?=5 --ppc FS.?,FL.?=4 --ppc RH=.3 in.nc out.nc
- Although PPC-rounding instantly reduces data precision, on-disk
-storage reduction only occurs once the data are compressed.
-
- How can one be sure the lossy data are sufficiently precise? PPC
-preserves all significant digits of every value. The DSD algorithm uses
-floating point math to round each value optimally so that it has the
-maximum number of zeroed bits that preserve the specified precision.
-The NSD algorithm uses a theoretical approach (3.2 bits per base-10
-digit), tuned and tested to ensure the _worst_ case quantization error
-is less than half the value of the minimum increment in the least
-significant digit.
-
- _Note for Info users_: The definition of error metrics relies heavily
-on mathematical expressions which cannot be easily represented in Info.
-_See the printed manual (./nco.pdf) for much more detailed and complete
-documentation of this subject._
-
- All three metrics are expressed in terms of the fraction of the ten's
-place occupied by the LSD. If the LSD is the hundreds digit or the
-thousandths digit, then the metrics are fractions of 100, or of 1/100,
-respectively. PPC algorithms should produce maximum absolute errors no
-greater than 0.5 in these units. If the LSD is the hundreds digit, then
-quantized versions of true values will be within fifty of the true
-value. It is much easier to satisfy this tolerance for a true value of 100
-(only 50% accuracy required) than for 999 (5% accuracy required). Thus
-the minimum accuracy guaranteed for NSD=1 ranges from 5-50%. For this
-reason, the best and worst cast performance usually occurs for true
-values whose LSD value is close to one and nine, respectively. Of
-course most users prefer PRC > 1 because accuracies increase
-exponentially with PRC. Continuing the previous example to PRC=2,
-quantized versions of true values from 1000-9999 will also be within 50
-of the true value, i.e., have accuracies from 0.5-5%. In other words,
-only two significant digits are necessary to guarantee better than 5%
-accuracy in quantization. We recommend that dataset producers and users
-consider quantizing datasets with NSD=3. This guarantees accuracy of
-0.05-0.5% for individual values. Statistics computed from ensembles of
-quantized values will, assuming the mean error EMEAN is small, have much
-better accuracy than 0.5%. This accuracy is the most that can be
-justified for many applications.
-
- To demonstrate these principles we conduct error analyses on an
-artificial, reproducible dataset, and on an actual dataset of
-observational analysis values. (3) The table summarizes quantization
-accuracy based on the three metrics.
-'NSD'
- Number of Significant Digits.
-'Emabs'
- Maximum absolute error.
-'Emebs'
- Mean absolute error.
-'Emean'
- Mean error.
-
- Artificial Data: N=1000000 values in [1.0,2.0) in steps of 1.0e-6
- Single-Precision Double-Precision Single-Precision
- NSD Emabs Emebs Emean Emabs Emebs Emean DSD Emabs Emebs Emean
- 1 0.31 0.11 4.1e-4 0.31 0.11 4.0e-4 1 0.30 0.11 -8.1e-4
- 2 0.39 0.14 6.8e-5 0.39 0.14 5.5e-5 2 0.39 0.14 -1.3e-4
- 3 0.49 0.17 1.0e-6 0.49 0.17 -5.5e-7 3 0.49 0.17 -2.0e-5
- 4 0.30 0.11 3.2e-7 0.30 0.11 -6.1e-6 4 0.30 0.11 5.1e-8
- 5 0.37 0.13 3.1e-7 0.38 0.13 -5.6e-6 5 0.38 0.13 2.6e-6
- 6 0.36 0.12 -4.4e-7 0.48 0.17 -4.1e-7 6 0.48 0.17 7.2e-6
- 7 0.00 0.00 0.0 0.30 0.10 1.5e-7 7 0.00 0.00 0.0
-
- Observational Analysis: N=13934592 values MERRA Temperature 20130601
- Single-Precision
- NSD Emabs Emebs Emean
- 1 0.31 0.11 2.4e-3
- 2 0.39 0.14 3.8e-4
- 3 0.49 0.17 -9.6e-5
- 4 0.30 0.11 2.3e-3
- 5 0.37 0.13 2.2e-3
- 6 0.36 0.13 1.7e-2
- 7 0.00 0.00 0.0
- All results show that PPC quantization performs as expected.
-Absolute maximum errors EMABS < 0.5 for all PRC. For 1 <= PRC <= 6,
-quantization results in comparable maximum absolute and mean absolute
-errors EMABS and EMEBS, respectively. Mean errors EMEAN are orders of
-magnitude smaller because quantization produces over- and
-under-estimated values in balance. When PRC=7, quantization of
-single-precision values is ineffective, because all available bits are
-used to represent the maximum precision of seven digits. The maximum
-and mean absolute errors EMABS and EMEBS are nearly identical across
-algorithms, precisions, and dataset types. This is consistent with both
-the artificial data and empirical data being random, and thus exercising
-equally strengths and weaknesses of the algorithms over the course of
-millions of input values. We generated artificial arrays with many
-different starting values and interval spacing and all gave
-qualitatively similar results. The results presented are the worst
-obtained.
-
- The artificial data has much smaller mean error EMEAN than the
-observational analysis. The reason why is unclear. It may be because
-the temperature field is concentrated in particular ranges of values
-(and associated quantization errors) prevalent on Earth, e.g., 200 < T <
-320. It is worth noting that the mean error EMEAN < 0.01 for 1 <= PRC <
-6, and that EMEAN is typically at least two or more orders of magnitude
-less than EMABS. Thus quantized values with precisions as low as PRC=1
-still yield highly significant statistics by contemporary scientific
-standards.
-
- Testing shows that PPC quantization enhances compression of typical
-climate datasets. The degree of enhancement depends, of course, on the
-required precision. Model results are often computed as 'NC_DOUBLE'
-then archived as 'NC_FLOAT' to save space. This table summarizes the
-performance of lossless and lossy compression on two typical, or at
-least random, netCDF data files. The files were taken from
-representative model-simulated and satellite-retrieved datasets. Only
-floating point data were compressed. No attempt was made to compress
-integer-type variables as they occupy an insignificant fraction of every
-dataset. The columns are
-'Type'
- File-type: 'N3' for netCDF 'CLASSIC', 'N4' for 'NETCDF4'), 'N7' for
- 'NETCDF4_CLASSIC' (which comprises netCDF3 data types and
- structures with netCDF4 storage features like compression), 'H4'
- for HDF4, and 'H5' for HDF5. 'N4/7' means results apply to both
- 'N4' and 'N7' filetypes.
-'LLC'
- Type of lossless compression employed, if any. Bare numbers refer
- to the strength of the DEFLATE algorithm employed internally by
- netCDF4/HDF5, while numbers prefixed with 'B' refer to the block
- size employed by the Burrows-Wheeler algorithm in 'bzip2'.
-'PPC'
- Number of significant digits retained by the precision-preserving
- compression NSD algorithm.
-'Pck'
- 'Y' if the default 'ncpdq' packing algorithm (convert floating
- point types to 'NC_SHORT') was employed. A dash ('-') indicates
- the associated compression feature was not employed.
-'Size'
- Resulting filesize in MB.
-'%'
- Compression ratio, i.e., resulting filesize relative to original
- size, in percent. In some cases the original files is already
- losslessly compressed. The compression ratios reported are
- relative to the size of the original file as distributed, not as
- optimally losslessly compressed.
- # dstmch90_clm.nc
- Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 34.7 100.0 Original is not compressed
- N3 B1 - - 28.9 83.2 bzip2 -1
- N3 B9 - - 29.3 84.4 bzip2 -9
- N7 - - - 35.0 101.0
- N7 1 - - 28.2 81.3 -L 1
- N7 9 - - 28.0 80.8 -L 9
- N7 - - Y 17.6 50.9 ncpdq -L 0
- N7 1 - Y 7.9 22.8 ncpdq -L 1
- N7 1 7 - 28.2 81.3 --ppc default=7
- N7 1 6 - 27.9 80.6 --ppc default=6
- N7 1 5 - 25.9 74.6 --ppc default=5
- N7 1 4 - 22.3 64.3 --ppc default=4
- N7 1 3 - 18.9 54.6 --ppc default=3
- N7 1 2 - 14.5 43.2 --ppc default=2
- N7 1 1 - 10.0 29.0 --ppc default=1
-
- # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
- Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 119.8 100.0 Original is not compressed
- N3 B1 - - 84.2 70.3 bzip2 -1
- N3 B9 - - 84.8 70.9 bzip2 -9
- N7 - - - 120.5 100.7
- N7 1 - - 82.6 69.0 -L 1
- N7 9 - - 82.1 68.6 -L 9
- N7 - - Y 60.7 50.7 ncpdq -L 0
- N7 1 - Y 26.0 21.8 ncpdq -L 1
- N7 1 7 - 82.6 69.0 --ppc default=7
- N7 1 6 - 81.9 68.4 --ppc default=6
- N7 1 5 - 77.2 64.5 --ppc default=5
- N7 1 4 - 69.0 57.6 --ppc default=4
- N7 1 3 - 59.3 49.5 --ppc default=3
- N7 1 2 - 49.5 41.3 --ppc default=2
- N7 1 1 - 38.2 31.9 --ppc default=1
-
- # MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.hdf
- Type LLC PPC Pck Size % Flags and Notes
- H4 5 - - 244.3 100.0 Original is compressed
- H4 B1 - - 244.7 100.1 bzip2 -1
- N4 5 - - 214.5 87.8
- N7 5 - - 210.6 86.2
- N4 B1 - - 215.4 88.2 bzip2 -1
- N4 B9 - - 214.8 87.9 bzip2 -9
- N3 - - - 617.1 252.6
- N4/7 - - - 694.0 284.0 -L 0
- N4/7 1 - - 223.2 91.3 -L 1
- N4/7 9 - - 207.3 84.9 -L 9
- N4/7 - - Y 347.1 142.1 ncpdq -L 0
- N4/7 1 - Y 133.6 54.7 ncpdq -L 1
- N4/7 1 7 - 223.1 91.3 --ppc default=7
- N4/7 1 6 - 225.1 92.1 --ppc default=6
- N4/7 1 5 - 221.4 90.6 --ppc default=5
- N4/7 1 4 - 201.4 82.4 --ppc default=4
- N4/7 1 3 - 185.3 75.9 --ppc default=3
- N4/7 1 2 - 150.0 61.4 --ppc default=2
- N4/7 1 1 - 100.8 41.3 --ppc default=1
-
- # OMI-Aura_L2-OMIAuraSO2_2012m1222-o44888_v01-00-2014m0107t114720.h5
- Type LLC PPC Pck Size % Flags and Notes
- H5 5 - - 29.5 100.0 Original is compressed
- H5 B1 - - 29.3 99.6 bzip2 -1
- N4 5 - - 29.5 100.0
- N4 B1 - - 29.3 99.6 bzip2 -1
- N4 B9 - - 29.3 99.4 bzip2 -9
- N4 - - - 50.7 172.3 -L 0
- N4 1 - - 29.8 101.3 -L 1
- N4 9 - - 29.4 99.8 -L 9
- N4 - - Y 27.7 94.0 ncpdq -L 0
- N4 1 - Y 12.9 43.9 ncpdq -L 1
- N4 1 7 - 29.7 100.7 --ppc default=7
- N4 1 6 - 29.7 100.8 --ppc default=6
- N4 1 5 - 27.3 92.8 --ppc default=5
- N4 1 4 - 23.8 80.7 --ppc default=4
- N4 1 3 - 20.3 69.0 --ppc default=3
- N4 1 2 - 15.1 51.2 --ppc default=2
- N4 1 1 - 9.9 33.6 --ppc default=1
-
- A selective, per-variable approach to PPC yields the best balance of
-precision and compression yet requires the dataset producer to
-understand the intrinsic precision of each variable. Such a
-specification for a GCM dataset might look like this (using names for
-the NCAR CAM model):
- # Be conservative on non-explicit quantities, so default=5
- # Some quantities deserve four significant digits
- # Many quantities, such as aerosol optical depths and burdens, are
- # highly uncertain and only useful to three significant digits.
- ncks -7 -O \
- --ppc default=5 \
- --ppc AN.?,AQ.?=4 \
- --ppc AER.?,AOD.?,ARE.?,AW.?,BURDEN.?=3 \
- ncar_cam.nc ~/foo.nc
-
- ---------- Footnotes ----------
-
- (1) Rounding is performed by the internal math library 'rint()'
-family of functions that were standardized in C99. The exact alorithm
-employed is VAL := rint(SCALE*VAL)/SCALE where SCALE is the nearest
-power of 2 that exceeds 10**PRC, and the inverse of SCALE is used when
-PRC < 0. For PPC = 3 or PPC = -2, for example, we have SCALE = 1024 and
-SCALE = 1/128.
-
- (2) The 'nc3tonc4' tool by Jeff Whitaker inspired NCO to implement
-PPC. NCO implements a different DSD algorithm than 'nc3tonc4', and
-produces slightly different (not bit-for-bit) though self-consistent and
-equivalent results. 'nc3tonc4' records the precision of its DSD
-algorithm in the attribute 'least_significant_digit' and NCO does the
-same for consistency.
-
- (3) The artificial dataset employed is one million evenly spaced
-values from 1.0-2.0. The analysis data are N=13934592 values of the
-temperature field from the NASA MERRA analysis of 20130601.
-
-3.28 Deflation
-==============
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncks',
-'ncpdq', 'ncra', 'ncrcat', 'ncwa'
-Short options: '-L'
-Long options: '--dfl_lvl', '--deflate'
-
- All NCO operators that define variables support the netCDF4 feature
-of storing variables compressed with the lossless DEFLATE compression
-algorithm. DEFLATE combines the Lempel-Ziv encoding with Huffman
-coding. The specific version used by netCDF4/HDF5 is that implemented
-in the 'zlib' library used by 'gzip'. Activate deflation with the '-L
-DFL_LVL' short option (or with the same argument to the '--dfl_lvl' or
-'--deflate' long options). Specify the deflation level DFL_LVL on a
-scale from no deflation (DFL_LVL = 0) to maximum deflation (DFL_LVL =
-9). Under the hood, this selects the compression blocksize. Minimal
-deflation (DFL_LVL = 1) achieves considerable storage compression with
-little time penalty. Higher deflation levels require more time for
-compression. File sizes resulting from minimal (DFL_LVL = 1) and
-maximal (DFL_LVL = 9) deflation levels typically differ by less than 10%
-in size.
-
- To compress an entire file using deflation, use
- ncks -4 -L 0 in.nc out.nc # No deflation (fast, no time penalty)
- ncks -4 -L 1 in.nc out.nc # Minimal deflation (little time penalty)
- ncks -4 -L 9 in.nc out.nc # Maximal deflation (much slower)
-
- Unscientific testing shows that deflation compresses typical climate
-datasets by 30-60%. Packing, a lossy compression technique available
-for all netCDF files (see *note Packed data::), can easily compress
-files by 50%. Packed data may be deflated to squeeze datasets by about
-80%:
- ncks -4 -L 1 in.nc out.nc # Minimal deflation (~30-60% compression)
- ncks -4 -L 9 in.nc out.nc # Maximal deflation (~31-63% compression)
- ncpdq in.nc out.nc # Standard packing (~50% compression)
- ncpdq -4 -L 9 in.nc out.nc # Deflated packing (~80% compression)
- 'ncks' prints deflation parameters, if any, to screen (*note ncks
-netCDF Kitchen Sink::).
-
-3.29 MD5 digests
-================
-
-Availability: 'ncecat', 'ncks', 'ncrcat'
-Short options:
-Long options: '--md5_dgs', '--md5_digest', '--md5_wrt_att',
-'--md5_write_attribute'
-
- As of NCO version 4.1.0 (April, 2012), NCO supports data integrity
-verification using the MD5 digest algorithm. This support is currently
-implemented in 'ncks' and in the multifile concantenators 'ncecat' and
-'ncrcat'. Activate it with the '--md5_dgs' or '--md5_digest' long
-options. As of NCO version 4.3.3 (July, 2013), NCO will write the MD5
-digest of each variable as an 'NC_CHAR' attribute named 'MD5'. This
-support is currently implemented in 'ncks' and in the multifile
-concantenators 'ncecat' and 'ncrcat'. Activate it with the
-'--md5_wrt_att' or '--md5_write_attribute' long options.
-
- The behavior and verbosity of the MD5 digest is operator-dependent.
-When activating MD5 digests with 'ncks' it is assumed that the user
-simply wishes to see the digest of every variable and this is done when
-the debugging level exceeds one. This incurs only the minor overhead of
-performing the hash algorithm for each variable read. MD5 digests may
-be activated in both the one- and two-filename argument forms of 'ncks',
-which are used for printing and for sub-setting, respectively. The MD5
-digests are shown as a 32-character hexadecimal string in which each two
-characters represent one byte of the 16-byte digest:
- > ncks -O -D 2 -C --md5 -v md5_a,md5_abc ~/nco/data/in.nc
- ...
- ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
- md5_a = 'a'
- ncks: INFO MD5(md5_abc) = 900150983cd24fb0d6963f7d28e17f72
- lev[0]=100 md5_abc[0--2]='abc'
- > ncks -O -D 2 -C -d lev,0 --md5 -v md5_a,md5_abc ~/nco/data/in.nc
- ...
- ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
- md5_a = 'a'
- ncks: INFO MD5(md5_abc) = 0cc175b9c0f1b6a831c399e269772661
- lev[0]=100 md5_abc[0--0]='a'
- In fact these examples demonstrate the validity of the hash algorithm
-since the MD5 hashes of the strings "a" and "abc" are widely known. The
-second example shows that the hyperslab of variable 'md5_abc' (= "abc")
-consisting of only its first letter (= "a") has the same hash as the
-variable 'md5_a' ("a"). This illustrates that MD5 digests act only on
-variable data, not on metadata.
-
- When activating MD5 digests with 'ncecat' or 'ncrcat' it is assumed
-that the user wishes to verify that every variable written to disk has
-the same MD5 digest as when it is subsequently read from disk. This
-incurs the major additional overhead of reading in each variable after
-it is written and performing the hash algorithm again on that to compare
-to the original hash. Moreover, it is assumed that such operations are
-generally done "production mode" where the user is not interested in
-actually examining the digests herself. The digests proceed silently
-unless the debugging level exceeds three:
- > ncecat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
- ...
- ncecat: INFO MD5(wnd_spd) = bec190dd944f2ce2794a7a4abf224b28
- ncecat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
- > ncrcat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
- ...
- ncrcat: INFO MD5(wnd_spd) = 74699bb0a72b7f16456badb2c995f1a1
- ncrcat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
- Regardless of the debugging level, an error is returned when the
-digests of the variable read from the source file and from the output
-file disagree.
-
- These rules are evolving and as NCO pays more attention to data
-integrity. We welcome feedback and suggestions from users.
-
-3.30 Buffer sizes
-=================
-
-Availability: All operators
-Short options:
-Long options: '--bfr_sz_hnt', '--buffer_size_hint'
-
- As of NCO version 4.2.0 (May, 2012), NCO allows the user to request
-specific buffer sizes to allocate for reading and writing files. This
-buffer size determines how many system calls the netCDF layer must
-invoke to read and write files. By default, netCDF uses the preferred
-I/O block size returned as the 'st_blksize' member of the 'stat'
-structure returned by the 'stat()' system call (1). Otherwise, netCDF
-uses twice the system pagesize. Larger sizes can increase access speed
-by reducing the number of system calls netCDF makes to read/write data
-from/to disk. Because netCDF cannot guarantee the buffer size request
-will be met, the actual buffer size granted by the system is printed as
-an INFO statement.
- # Request 2 MB file buffer instead of default 8 kB buffer
- > ncks -O -D 3 --bfr_sz=2097152 ~/nco/data/in.nc ~/foo.nc
- ...
- ncks: INFO nc__open() will request file buffer size = 2097152 bytes
- ncks: INFO nc__open() opened file with buffer size = 2097152 bytes
- ...
-
- ---------- Footnotes ----------
-
- (1) On modern Linux systems the block size defaults to 8192 B. The
-GLADE filesystem at NCAR has a block size of 512 kB.
-
-3.31 RAM disks
-==============
-
-Availability: All operators
-Short options:
-Long options: '--ram_all', '--create_ram', '--open_ram',
-'--diskless_all'
-
- As of NCO version 4.2.1 (August, 2012), NCO supports the use of
-diskless files, aka RAM disks, for file access and creation. Two
-independent switches, '--open_ram' and '--create_ram', control this
-feature. Before describing the specifics of these switches, we describe
-why many NCO operations will not benefit from them. Essentially,
-reading/writing from/to RAM rather than disk only hastens the task when
-reads/writes to disk are avoided. Most NCO operations are simple enough
-that they require a single read-from/write-to disk for every block of
-input/output. Diskless access does not change this, but it does add an
-extra read-from/write-to RAM. However this extra RAM write/read does
-avoid contention for limited system resources like disk-head access.
-Operators which may benefit from RAM disks include 'ncwa', which may
-need to read weighting variables multiple times, the multi-file
-operators 'ncra', 'ncrcat', and 'ncecat', which may try to write output
-at least once per input file, and 'ncap2' scripts which may be
-arbitrarily long and convoluted.
-
- The '--open_ram' switch causes input files to copied to RAM when
-opened. All further metadata and data access occurs in RAM and thus
-avoids access time delays caused by disk-head movement. Usually input
-data is read at most once so it is unlikely that requesting input files
-be stored in RAM will save much time. The likeliest exceptions are
-files that are accessed numerous times, such as those analyzed
-extensively analyzed by 'ncap2'.
-
- Invoking '--open_ram', '--ram_all', or '--diskless_all' uses much
-more system memory. To copy the input file to RAM increases the
-sustained memory use by exactly the on-disk filesize of the input file,
-i.e., MS += FT. For large input files this can be a huge memory burden
-that starves the rest of the NCO analysis of sufficient RAM. To be
-safe, use '--open_ram', '--ram_all', or '--diskless_all' only on files
-that are much (say at least a factor of four) smaller than your
-available system RAM. See *note Memory Requirements:: for further
-details.
-
- The '--create_ram' switch causes output files to be created in RAM,
-rather than on disk. These files are copied to disk only when closed,
-i.e., when the operator completes. Creating files in RAM may save time,
-especially with 'ncap2' computations that are iterative, e.g., loops,
-and for multi-file operators that write output every record (timestep)
-or file. RAM files provide many of the same benefits as RAM variables
-in such cases (*note RAM variables::).
-
- Two switches, '--ram_all' and '--diskless_all', are convenient
-shortcuts for specifying both '--create_ram' and '--diskless_ram'. Thus
- ncks in.nc out.nc # Default: Open in.nc on disk, write out.nc to disk
- ncks --open_ram in.nc out.nc # Open in.nc in RAM, write out.nc to disk
- ncks --create_ram in.nc out.nc # Create out.nc in RAM, write to disk
- # Open in.nc in RAM, create out.nc in RAM, then write out.nc to disk
- ncks --open_ram --create_ram in.nc out.nc
- ncks --ram_all in.nc out.nc # Same as above
- ncks --diskless_all in.nc out.nc # Same as above
-
- It is straightforward to demonstrate the efficacy of RAM disks. For
-NASA we constructed a test that employs 'ncecat' an arbitrary number
-(set to one hundred thousand) of files are all symbolically linked to
-the same file. Everything is on the local filesystem (not DAP).
- # Create symbolic links for benchmark
- cd ${DATA}/nco # Do all work here
- for idx in {1..99999}; do
- idx_fmt=`printf "%05d" ${idx}`
- /bin/ln -s ${DATA}/nco/LPRM-AMSR_E_L3_D_SOILM3_V002-20120512T111931Z_20020619.nc \
- ${DATA}/nco/${idx_fmt}.nc
- done
- # Benchmark time to ncecat one hundred thousand files
- time ncecat --create_ram -O -u time -v ts -d Latitude,40.0 \
- -d Longitude,-105.0 -p ${DATA}/nco -n 99999,5,1 00001.nc ~/foo.nc
- Run normally on a laptop in 201303, this completes in 21 seconds.
-The '--create_ram' reduces the elapsed time to 9 seconds. Some of this
-speed may be due to using symlinks and caching. However, the efficacy
-of '--create_ram' is clear. Placing the output file in RAM avoids
-thousands of disk writes. It is not unreasonable to for NCO to process
-a million files like this in a few minutes. However, there is no
-substitute for benchmarking with real files.
-
- A completely independent way to reduce time spent writing files is to
-refrain from writing temporary output files. This is accomplished with
-the '--no_tmp_fl' switch (*note Temporary Output Files::).
-
-3.32 Packed data
-================
-
-Availability: 'ncap2', 'ncbo', 'nces', 'ncflint', 'ncpdq', 'ncra',
-'ncwa'
-Short options: None
-Long options: '--hdf_upk', '--hdf_unpack'
-
- The phrase "packed data" refers to data which are stored in the
-standard netCDF3 packing format which employs a lossy algorithm. See
-*note ncks netCDF Kitchen Sink:: for a description of deflation, a
-lossless compression technique available with netCDF4 only. Packed data
-may be deflated to save additional space.
-
-Packing Algorithm
------------------
-
-"Packing" The standard netCDF packing algorithm (described here
-(http://www.unidata.ucar.edu/software/netcdf/docs/netcdf/Attribute-Conventions.html))
-produces data with the same dynamic range as the original but which
-requires no more than half the space to store. Like all packing
-algorithms, it is _lossy_. The packed variable is stored (usually) as
-type 'NC_SHORT' with the two attributes required to unpack the variable,
-'scale_factor' and 'add_offset', stored at the original (unpacked)
-precision of the variable (1). Let MIN and MAX be the minimum and
-maximum values of X.
-
- SCALE_FACTOR = (MAX-MIN)/NDRV
-ADD_OFFSET = 0.5*(MIN+MAX)
-PCK = (UPK-ADD_OFFSET)/SCALE_FACTOR = (UPK-0.5*(MIN+MAX))*NDRV/(MAX-MIN)
-
- where NDRV is the number of discrete representable values for given
-type of packed variable. The theoretical maximum value for NDRV is two
-raised to the number of bits used to store the packed variable. Thus if
-the variable is packed into type 'NC_SHORT', a two-byte datatype, then
-there are at most 2^{16} = 65536 distinct values representable. In
-practice, the number of discretely representible values is taken to be
-two less than the theoretical maximum. This leaves space for a missing
-value and solves potential problems with rounding that may occur during
-the unpacking of the variable. Thus for 'NC_SHORT', ndrv = 65536 - 2 =
-65534. Less often, the variable may be packed into type 'NC_CHAR',
-where ndrv = 2^{8} - 2 = 256 - 2 = 254, or type 'NC_INT' where where
-ndrv = 2^{32} - 2 = 4294967295 - 2 = 4294967293. One useful feature of
-(lossy) netCDF packing algorithm is that additional, loss-less packing
-algorithms perform well on top of it.
-
-Unpacking Algorithm
--------------------
-
-"Unpacking" The unpacking algorithm depends on the presence of two
-attributes, 'scale_factor' and 'add_offset'. If 'scale_factor' is
-present for a variable, the data are multiplied by the value
-SCALE_FACTOR after the data are read. If 'add_offset' is present for a
-variable, then the ADD_OFFSET value is added to the data after the data
-are read. If both 'scale_factor' and 'add_offset' attributes are
-present, the data are first scaled by SCALE_FACTOR before the offset
-ADD_OFFSET is added.
-
- UPK = SCALE_FACTOR*PCK + ADD_OFFSET = (MAX-MIN)*PCK/NDRV +
-0.5*(MIN+MAX)
-
- When 'scale_factor' and 'add_offset' are used for packing, the
-associated variable (containing the packed data) is typically of type
-'byte' or 'short', whereas the unpacked values are intended to be of
-type 'int', 'float', or 'double'. An attribute's 'scale_factor' and
-'add_offset' and '_FillValue', if any, should all be of the type
-intended for the unpacked data, i.e., 'int', 'float' or 'double'.
-
-Default Handling of Packed Data
--------------------------------
-
-Most files originally written in HDF format use the HDF
-packing/unpacking algorithm. This algorithm is incompatible with the
-netCDF packing algorithm described above. The unpacking component of
-the HDF algorithm (described here
-(http://www.hdfgroup.org/HDF5/doc/UG/UG_frame10Datasets.html)) is
-
- UPK = SCALE_FACTOR*(PCK - ADD_OFFSET)
-
- Confusingly, the (incompatible) netCDF and HDF algorithms both store
-their parameters in attributes with the same names ('scale_factor' and
-'add_offset'). Data packed with one algorithm should never be unpacked
-with the other; doing so will result in incorrect answers.
-Unfortunately, few users are aware that their datasets may be packed,
-and fewer know the details of the packing algorithm employed. This is
-what we in the "bizness" call an "interoperability" issue because it
-hampers data analysis performed on heterogeneous systems.
-
- As described below, NCO automatically unpacks data before performing
-arithmetic. This automatic unpacking occurs silently since there is
-usually no reason to bother users with these details. There is as yet
-no generic way for NCO to know which packing convention was used, so NCO
-_assumes_ the netCDF convention was used. NCO uses the same convention
-for unpacking unless explicitly told otherwise with the '--hdf_upk'
-(also '--hdf_unpack') switch. Until and unless a method of
-automatically detecting the packing method is devised, it must remain
-the user's responsibility to tell NCO when to use the HDF convention
-instead of the netCDF convention to unpack.
-
- If your data originally came from an HDF file (e.g., NASA EOS) then
-it was likely packed with the HDF convention and must be unpacked with
-the same convention. Our recommendation is to only request HDF
-unpacking when you are certain. Most packed datasets encountered by NCO
-will have used the netCDF convention. Those that were not will
-hopefully produce noticeably weird values when unpacked by the wrong
-algorithm. Before or after panicking, treat this as a clue to re-try
-your commands with the '--hdf_upk' switch. See *note ncpdq netCDF
-Permute Dimensions Quickly:: for an easy technique to unpack data packed
-with the HDF convention, and then re-pack it with the netCDF convention.
-
-Default Handling of Packed Data
--------------------------------
-
-All NCO arithmetic operators understand packed data. The operators
-automatically unpack any packed variable in the input file which will be
-arithmetically processed. For example, 'ncra' unpacks all record
-variables, and 'ncwa' unpacks all variable which contain a dimension to
-be averaged. These variables are stored unpacked in the output file.
-
- On the other hand, arithmetic operators do not unpack non-processed
-variables. For example, 'ncra' leaves all non-record variables packed,
-and 'ncwa' leaves packed all variables lacking an averaged dimension.
-These variables (called fixed variables) are passed unaltered from the
-input to the output file. Hence fixed variables which are packed in
-input files remain packed in output files. Completely packing and
-unpacking files is easily accomplished with 'ncpdq' (*note ncpdq netCDF
-Permute Dimensions Quickly::). Pack and unpack individual variables
-with 'ncpdq' and the 'ncap2' 'pack()' and 'unpack()' functions (*note
-Methods and functions::).
-
- ---------- Footnotes ----------
-
- (1) Although not a part of the standard, NCO enforces the policy that
-the '_FillValue' attribute, if any, of a packed variable is also stored
-at the original precision.
-
-3.33 Operation Types
-====================
-
-Availability: 'ncap2', 'ncra', 'nces', 'ncwa'
-Short options: '-y'
-Long options: '--operation', '--op_typ'
-The '-y OP_TYP' switch allows specification of many different types of
-operations Set OP_TYP to the abbreviated key for the corresponding
-operation:
-'avg'
- Mean value
-'sqravg'
- Square of the mean
-'avgsqr'
- Mean of sum of squares
-'max'
- Maximum value
-'min'
- Minimum value
-'mabs'
- Maximum absolute value
-'mebs'
- Mean absolute value
-'mabs'
- Minimum absolute value
-'rms'
- Root-mean-square (normalized by N)
-'rmssdn'
- Root-mean square (normalized by N-1)
-'sqrt'
- Square root of the mean
-'ttl'
- Sum of values
-NCO assumes coordinate variables represent grid axes, e.g., longitude.
-The only rank-reduction which makes sense for coordinate variables is
-averaging. Hence NCO implements the operation type requested with '-y'
-on all non-coordinate variables, not on coordinate variables. When an
-operation requires a coordinate variable to be reduced in rank, i.e.,
-from one dimension to a scalar or from one dimension to a degenerate
-(single value) array, then NCO _always averages_ the coordinate variable
-regardless of the arithmetic operation type performed on the
-non-coordinate variables.
-
- The mathematical definition of each arithmetic operation is given
-below. *Note ncwa netCDF Weighted Averager::, for additional
-information on masks and normalization. If an operation type is not
-specified with '-y' then the operator performs an arithmetic average by
-default. Averaging is described first so the terminology for the other
-operations is familiar.
-
- _Note for Info users_: The definition of mathematical operations
-involving rank reduction (e.g., averaging) relies heavily on
-mathematical expressions which cannot be easily represented in Info.
-_See the printed manual (./nco.pdf) for much more detailed and complete
-documentation of this subject._
-
- The definitions of some of these operations are not universally
-useful. Mostly they were chosen to facilitate standard statistical
-computations within the NCO framework. We are open to redefining and or
-adding to the above. If you are interested in having other statistical
-quantities defined in NCO please contact the NCO project (*note Help
-Requests and Bug Reports::).
-
-EXAMPLES
-
-Suppose you wish to examine the variable 'prs_sfc(time,lat,lon)' which
-contains a time series of the surface pressure as a function of latitude
-and longitude. Find the minimum value of 'prs_sfc' over all dimensions:
- ncwa -y min -v prs_sfc in.nc foo.nc
-Find the maximum value of 'prs_sfc' at each time interval for each
-latitude:
- ncwa -y max -v prs_sfc -a lon in.nc foo.nc
-Find the root-mean-square value of the time-series of 'prs_sfc' at every
-gridpoint:
- ncra -y rms -v prs_sfc in.nc foo.nc
- ncwa -y rms -v prs_sfc -a time in.nc foo.nc
-The previous two commands give the same answer but 'ncra' is preferred
-because it has a smaller memory footprint. A dimension of size one is
-said to be "degenerate". By default, 'ncra' leaves the (degenerate)
-'time' dimension in the output file (which is usually useful) whereas
-'ncwa' removes the 'time' dimension (unless '-b' is given).
-
-These operations work as expected in multi-file operators. Suppose that
-'prs_sfc' is stored in multiple timesteps per file across multiple
-files, say 'jan.nc', 'feb.nc', 'march.nc'. We can now find the three
-month maximum surface pressure at every point.
- nces -y max -v prs_sfc jan.nc feb.nc march.nc out.nc
-
-It is possible to use a combination of these operations to compute the
-variance and standard deviation of a field stored in a single file or
-across multiple files. The procedure to compute the temporal standard
-deviation of the surface pressure at all points in a single file 'in.nc'
-involves three steps.
- ncwa -O -v prs_sfc -a time in.nc out.nc
- ncbo -O -v prs_sfc in.nc out.nc out.nc
- ncra -O -y rmssdn out.nc out.nc
- First construct the temporal mean of 'prs_sfc' in the file 'out.nc'.
-Next overwrite 'out.nc' with the anomaly (deviation from the mean).
-Finally overwrite 'out.nc' with the root-mean-square of itself. Note
-the use of '-y rmssdn' (rather than '-y rms') in the final step. This
-ensures the standard deviation is correctly normalized by one fewer than
-the number of time samples. The procedure to compute the variance is
-identical except for the use of '-y var' instead of '-y rmssdn' in the
-final step.
-
- 'ncap2' can also compute statistics like standard deviations.
-Brute-force implementation of formulae is one option, e.g.,
- ncap2 -s 'prs_sfc_sdn=sqrt((prs_sfc-prs_sfc.avg($time)^2).total($time)/($time.size-1))'
- in.nc out.nc
- The operation may, of course, be broken into multiple steps in order
-to archive intermediate quantities, such as the time-anomalies
- ncap2 -s 'prs_sfc_anm=prs_sfc-prs_sfc.avg($time)' \
- -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-1))' \
- in.nc out.nc
-
- 'ncap2' supports intrinsic standard deviation functions (*note
-Operation Types::) which simplify the above expression to
- ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in.nc out.nc
- These instrinsic functions compute the answer quickly and concisely.
-
- The procedure to compute the spatial standard deviation of a field in
-a single file 'in.nc' involves three steps.
- ncwa -O -v prs_sfc,gw -a lat,lon -w gw in.nc out.nc
- ncbo -O -v prs_sfc,gw in.nc out.nc out.nc
- ncwa -O -y rmssdn -v prs_sfc -a lat,lon -w gw out.nc out.nc
- First the appropriately weighted (with '-w gw') spatial mean values
-are written to the output file. This example includes the use of a
-weighted variable specified with '-w gw'. When using weights to compute
-standard deviations one must remember to include the weights in the
-initial output files so that they may be used again in the final step.
-The initial output file is then overwritten with the gridpoint
-deviations from the spatial mean. Finally the root-mean-square of the
-appropriately weighted spatial deviations is taken.
-
- The 'ncap2' solution to the spatially-weighted standard deviation
-problem is
- ncap2 -s 'prs_sfc_sdn=(prs_sfc*gw-prs_sfc*gw.avg($lat,$lon)).rmssdn($lat,$lon)' \
- in.nc out.nc
- Be sure to multiply the variable by the weight prior to computing the
-the anomalies and the standard deviation.
-
- The procedure to compute the standard deviation of a time-series
-across multiple files involves one extra step since all the input must
-first be collected into one file.
- ncrcat -O -v tpt in.nc in.nc foo1.nc
- ncwa -O -a time foo1.nc foo2.nc
- ncbo -O -v tpt foo1.nc foo2.nc foo3.nc
- ncra -O -y rmssdn foo3.nc out.nc
- The first step assembles all the data into a single file. Though
-this may consume a lot of temporary disk space, it is more or less
-required by the 'ncbo' operation in the third step.
-
-3.34 Type Conversion
-====================
-
-Availability (automatic type conversion): 'ncap2', 'ncbo', 'nces',
-'ncflint', 'ncra', 'ncwa'
-Short options: None (it's _automatic_)
-Availability (manual type conversion): 'nces', 'ncra', 'ncwa'
-Short options: None
-Long options: '--dbl', '--flt', '--rth_dbl', '--rth_flt'
- Type conversion refers to the casting or coercion of one fundamental
-or atomic data type to another, e.g., converting 'NC_SHORT' (two bytes)
-to 'NC_DOUBLE' (eight bytes). Type conversion always "promotes" or
-"demotes" the range and/or precision of the values a variable can hold.
-Type conversion is automatic when the language carries out this
-promotion according to an internal set of rules without explicit user
-intervention. In contrast, manual type conversion refers to explicit
-user commands to change the type of a variable or attribute. Most type
-conversion happens automatically, yet there are situations in which
-manual type conversion is advantageous.
-
-3.34.1 Automatic type conversion
---------------------------------
-
-There are at least two reasons to avoid type conversions. First, type
-conversions are expensive since they require creating (temporary)
-buffers and casting each element of a variable from its storage type to
-some other type and then, often, converting it back. Second, a
-dataset's creator perhaps had a good reason for storing data as, say,
-'NC_FLOAT' rather than 'NC_DOUBLE'. In a scientific framework there is
-no reason to store data with more precision than the observations merit.
-Normally this is single-precision, which guarantees 6-9 digits of
-precision. Reasons to engage in type conversion include avoiding
-rounding errors and out-of-range limitations of less-precise types.
-This is the case with most integers. Thus NCO defaults to automatically
-promote integer types to floating point when performing lengthy
-arithmetic, yet NCO defaults to not promoting single to double-precision
-floats.
-
- Before discussing the more subtle floating point issues, we first
-examine integer promotion. We will show how following parsimonious
-conversion rules dogmatically can cause problems, and what NCO does
-about that. That said, there are situations in which implicit
-conversion of single- to double-precision is also warranted.
-Understanding the narrowness of these situations takes time, and we hope
-the reader appreciates the following detailed discussion.
-
- Consider the average of the two 'NC_SHORT's '17000s' and '17000s'. A
-straightforward average without promotion results in garbage since the
-intermediate value which holds their sum is also of type 'NC_SHORT' and
-thus overflows on (i.e., cannot represent) values greater than 32,767
-(1). There are valid reasons for expecting this operation to succeed
-and the NCO philosophy is to make operators do what you want, not what
-is purest. Thus, unlike C and Fortran, but like many other higher level
-interpreted languages, NCO arithmetic operators will perform automatic
-type conversion on integers when all the following conditions are met
-(2):
- 1. The requested operation is arithmetic. This is why type conversion
- is limited to the operators 'ncap2', 'ncbo', 'nces', 'ncflint',
- 'ncra', and 'ncwa'.
- 2. The arithmetic operation could benefit from type conversion.
- Operations that could benefit include averaging, summation, or any
- "hard" arithmetic that could overflow or underflow. Larger
- representable sums help avoid overflow, and more precision helps to
- avoid underflow. Type conversion does not benefit searching for
- minima and maxima ('-y min', or '-y max').
- 3. The variable on disk is of type 'NC_BYTE', 'NC_CHAR', 'NC_SHORT',
- or 'NC_INT'. Type 'NC_DOUBLE' is not promoted because there is no
- type of higher precision. Conversion of type 'NC_FLOAT' is
- discussed in detail below. When it occurs, it follows the same
- procedure (promotion then arithmetic then demotion) as conversion
- of integer types.
-
- When these criteria are all met, the operator promotes the variable
-in question to type 'NC_DOUBLE', performs all the arithmetic operations,
-casts the 'NC_DOUBLE' type back to the original type, and finally writes
-the result to disk. The result written to disk may not be what you
-expect, because of incommensurate ranges represented by different types,
-and because of (lack of) rounding. First, continuing the above example,
-the average (e.g., '-y avg') of '17000s' and '17000s' is written to disk
-as '17000s'. The type conversion feature of NCO makes this possible
-since the arithmetic and intermediate values are stored as 'NC_DOUBLE's,
-i.e., '34000.0d' and only the final result must be represented as an
-'NC_SHORT'. Without the type conversion feature of NCO, the average
-would have been garbage (albeit predictable garbage near '-15768s').
-Similarly, the total (e.g., '-y ttl') of '17000s' and '17000s' written
-to disk is garbage (actually '-31536s') since the final result (the true
-total) of 34000 is outside the range of type 'NC_SHORT'.
-
- After arithmetic is computed in double-precision for promoted
-variables, the intermediate double-precision values must be demoted to
-the variables' original storage type (e.g., from 'NC_DOUBLE' to
-'NC_SHORT'). NCO has handled this demotion in three ways in its
-history. Prior to October, 2011 (version 4.0.8), NCO employed the C library
-truncate function, 'trunc()' (3). Truncation rounds X to the nearest
-integer not larger in absolute value. For example, truncation rounds
-'1.0d', '1.5d', and '1.8d' to the same value, '1s'. Clearly, truncation
-does not round floating point numbers to the nearest integer! Yet
-truncation is how the C language performs implicit conversion of real
-numbers to integers.
-
- NCO stopped using truncation for demotion when an alert user (Neil
-Davis) informed us that this caused a small bias in the packing
-algorithm employed by 'ncpdq'. This led to NCO adopting rounding
-functions for demotion. Rounding functions eliminated the small bias in
-the packing algorithm.
-
- From February, 2012 through March, 2013 (versions 4.0.9-4.2.6), NCO
-employed the C library family of rounding functions, 'lround()'. These
-functions round X to the nearest integer, halfway cases away from zero.
-The problem with 'lround()' is that it always rounds real values ending
-in '.5' away from zero. This rounds, for example, '1.5d' and '2.5d' to
-'2s' and '3s', respectively.
-
- Since April, 2013 (version 4.3.0), NCO has employed the other C library
-family of rounding functions, 'lrint()'. This algorithm rounds X to the
-nearest integer, using the current rounding direction. Halfway cases
-are rounded to the nearest even integer. This rounds, for example, both
-'1.5d' and '2.5d' to the same value, '2s', as recommended by the IEEE.
-This rounding is symmetric: up half the time, down half the time. This
-is the current and hopefully final demotion algorithm employed by NCO.
-
- Hence because of automatic conversion, NCO will compute the average
-of '2s' and '3s' in double-precision arithmetic as ('2.0d' +
-'3.0d')/'2.0d') = '2.5d'. It then demotes this intermediate result back
-to 'NC_SHORT' and stores it on disk as 'trunc(2.5d)' = '2s' (versions up
-to 4.0.8), 'lround(2.5d)' = '3s' (versions 4.0.9-4.2.6), and
-'lrint(2.5d)' = '2s' (versions 4.3.0 and later).
-
- ---------- Footnotes ----------
-
- (1) 32767 = 2^15-1
-
- (2) Operators began performing automatic type conversions before
-arithmetic in NCO version 1.2, August, 2000. Previous versions never
-performed unnecessary type conversion for arithmetic.
-
- (3) The actual type conversions with trunction were handled by
-intrinsic type conversion, so the 'trunc()' function was never
-explicitly called, although the results would be the same if it were.
-
-3.34.2 Promoting Single-precision to Double
--------------------------------------------
-
-Promotion of real numbers from single- to double-precision is
-fundamental to scientific computing. When it should occur depends on
-the precision of the inputs and the number of operations.
-Single-precision (four-byte) numbers contain about seven significant
-figures, while double-precision contain about sixteen. More, err,
-precisely, the IEEE single-precision representation gives from 6 to 9
-significant decimal digits precision (1). And the IEEE double-precision
-representation gives from 15 to 17 significant decimal digits precision
-(2). Hence double-precision numbers represent about nine digits more
-precision than single-precision numbers.
-
- Given these properties, there are at least two possible arithmetic
-conventions for the treatment of real numbers:
- 1. Conservative, aka Fortran Convention Automatic type conversion
- during arithmetic in the Fortran language is, by default, performed
- only when necessary. All operands in an operation are converted to
- the most precise type involved the operation before the arithmetic
- operation. Expressions which involve only single-precision numbers
- are computed entirely in single-precision. Expressions involving
- mixed precision types are computed in the type of higher precision.
- NCO by default employs the Fortan Convention for promotion.
- 2. Aggressive, aka C Convention The C language is by default much more
- aggressive (and thus wasteful) than Fortran, and will always
- implicitly convert single- to double-precision numbers for no good
- reason. All real-number standard C library functions are
- double-precision, and C programmers must take extra steps to only
- utilize single precision arithmetic. The high level interpreted
- data analysis languages IDL, Matlab, and NCL all adopt the
- C Convention.
-
- NCO does not automatically promote 'NC_FLOAT' because, in our
-judgement, the performance penalty of always doing so would outweigh the
-potential benefits. The now-classic text "Numerical Recipes in C"
-discusses this point under the section "Implicit Conversion of Float to
-Double" (3). That said, such promotion is warranted in some
-circumstances.
-
- For example, rounding errors can accumulate to worrisome levels
-during arithmetic performed on large arrays of single-precision floats.
-This use-case occurs often in geoscientific studies of climate where
-thousands-to-millions of gridpoints may contribute to a single average.
-If the inputs are all single-precision, then so should be the output.
-However the intermediate results where running sums are accumulated may
-suffer from too much rounding or from underflow unless computed in
-double-precision.
-
- The order of operations matters to floating point math even when the
-analytic expressions are equal. Cautious users feel disquieted when
-results from equally valid analyses differ in the final bits instead of
-agreeing bit-for-bit. For example, averaging arrays in multiple stages
-produces different answers than averaging them in one step. This is
-easily seen in the computation of ensemble averages by two different
-methods. The NCO test file 'in.nc' contains single- and
-double-precision representations of the same temperature timeseries as
-'tpt_flt' and 'tpt_dbl'. Pretend each datapoint in this timeseries
-represents a monthly-mean temperature. We will mimic the derivation of
-a fifteen-year ensemble-mean January temperature by concatenating the
-input file five times, and then averaging the datapoints representing
-January two different ways. In Method 1 we derive the 15-year ensemble
-January average in two steps, as the average of three five-year
-averages. This method is naturally used when each input file contains
-multiple years and multiple input files are needed (4). In Method 2 we
-obtain 15-year ensemble January average in a single step, by averaging
-all 15 Januaries at one time:
- # tpt_flt and tpt_dbl are identical except for precision
- ncks --cdl -C -v tpt_flt,tpt_dbl ~/nco/data/in.nc
- # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
- # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
- # Create file with five "ten-month years" (i.e., 50 timesteps) of temperature data
- ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc in.nc ~/foo.nc
- # Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
- ncra --flt -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
- # Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
- ncra --flt -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
- # Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
- ncra --flt -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
- # Method 1: Obtain ensemble January average by averaging the averages
- ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
- # Method 2: Obtain ensemble January average by averaging the raw data
- # Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
- ncra --flt -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
- # Difference the two methods
- ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
- ncks --cdl ~/foo_avg_dff.nc
- # tpt_dbl = 5.6843418860808e-14 ;
- # tpt_flt = -3.051758e-05 ;
- Although the two methods are arithmetically equivalent, they produce
-slightly different answers due to the different order of operations.
-Moreover, it appears at first glance that the single-precision answers
-suffer from greater error than the double-precision answers. In fact
-both precisions suffer from non-zero rounding errors. The answers
-differ negligibly to machine precision, which is about seven significant
-figures for single precision floats ('tpt_flt'), and sixteen significant
-figures for double precision ('tpt_dbl'). The input precision
-determines the answer precision.
-
- IEEE arithmetic guarantees that two methods will produce bit-for-bit
-identical answers only if they compute the same operations in the same
-order. Bit-for-bit identical answers may also occur by happenstance
-when rounding errors exactly compensate one another. This is
-demonstrated by repeating the example above with the '--dbl' (or
-'--rth_dbl' for clarity) option which forces conversion of
-single-precision numbers to double-precision prior to arithmetic. Now
-'ncra' will treat the first value of 'tpt_flt', '273.1000f', as
-'273.1000000000000d'. Arithmetic on 'tpt_flt' then proceeds in
-double-precision until the final answer, which is converted back to
-single-precision for final storage.
- # Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
- ncra --dbl -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
- # Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
- ncra --dbl -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
- # Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
- ncra --dbl -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
- # Method 1: Obtain ensemble January average by averaging the averages
- ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
- # Method 2: Obtain ensemble January average by averaging the raw data
- # Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
- ncra --dbl -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
- # Difference the two methods
- ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
- # Show differences
- ncks --cdl ~/foo_avg_dff.nc
- # tpt_dbl = 5.6843418860808e-14 ;
- # tpt_flt = 0 ;
- The '--dbl' switch has no effect on the results computed from
-double-precision inputs. But now the two methods produce bit-for-bit
-identical results from the single-precision inputs! This is due to the
-happenstance of rounding along with the effects of the '--dbl' switch.
-The '--flt' and '--rth_flt' switches are provided for symmetry. They
-enforce the traditional NCO and Fortran convention of keeping
-single-precision arithmetic in single-precision unless a
-double-precision number is explicitly involved.
-
- We have shown that forced promotion of single- to double-precision
-prior to arithmetic has advantages and disadvantages. The primary
-disadvantages are speed and size. Double-precision arithmetic is 10-60%
-slower than, and requires twice the memory of single-precision
-arithmetic. The primary advantage is that rounding errors in
-double-precision are much less likely to accumulate to values near the
-precision of the underlying geophysical variable.
-
- For example, if we know temperature to five significant digits, then
-a rounding error of 1-bit could affect the least precise digit of
-temperature after 1,000-10,000 consecutive one-sided rounding errors
-under the worst possible scenario. Many geophysical grids have
-tens-of-thousands to millions of points that must be summed prior to
-normalization to compute an average. It is possible for
-single-precision rouding errors to accumulate and degrade the precision
-in such situtations. Double-precision arithmetic mititgates this
-problem, so '--dbl' would be warranted.
-
- This can be seen with another example, averaging a global surface
-temperature field with 'ncwa'. The input contains a single-precision
-global temperature field (stored in 'TREFHT') produced by the CAM3
-general circulation model (GCM) run and stored at 1.9 by 2.5 degrees
-resolution. This requires 94 latitudes and 144 longitudes, or 13,824
-total surface gridpoints, a typical GCM resolution these days. These
-input characteristics are provided only to show the context to the
-interested reader, equivalent results would be found in statistics of
-any dataset of comparable size. Models often represent Earth on a
-spherical grid where global averages must be created by weighting each
-gridcell by its latitude-dependent weight (i.e., the Gaussian weight
-stored in 'gw'), or by the surface area of each contributing gridpoint
-(stored in 'area').
-
- Like many geophysical models and most GCMs, CAM3 runs completely in
-double-precision yet stores its archival output in single-precision to
-save space. In practice such models usually save multi-dimensional
-prognostic and diagnostic fields (like 'TREFHT(lat,lon)' and
-'area(lat,lon)') as single-precision, while saving all one-dimensional
-coordinates and weights (here 'lat', 'lon', and 'gw(lon)') as
-double-precision. To obtain pure double-precision arithmetic _and_
-storage of the globla mean temperature, we first create and store
-double-precision versions of the single-precision fields:
- ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc
- The single- and double-precision temperatures may each be averaged
-globally using four permutations for the precision of the weight and of
-the intermediate arithmetic representation:
- 1. Single-precision weight ('area'), single-precision arithmetic
- 2. Double-precision weight ('gw'), single-precision arithmetic
- 3. Single-precision weight ('area'), double-precision arithmetic
- 4. Double-precision weight ('gw'), double-precision arithmetic
- # NB: Values below are printed with C-format %5.6f using
- # ncks -H -C -s '%5.6f' -v TREFHT,TREFHT_dbl out.nc
- # Single-precision weight (area), single-precision arithmetic
- ncwa --flt -O -a lat,lon -w area in.nc out.nc
- # TREFHT = 289.246735
- # TREFHT_dbl = 289.239964
- # Double-precision weight (gw), single-precision arithmetic
- ncwa --flt -O -a lat,lon -w gw in.nc out.nc
- # TREFHT = 289.226135
- # TREFHT_dbl = 289.239964
- # Single-precision weight (area), double-precision arithmetic
- ncwa --dbl -O -a lat,lon -w area in.nc out.nc
- # TREFHT = 289.239960
- # TREFHT_dbl = 289.239964
- # Double-precision weight (gw), double-precision arithmetic
- ncwa --dbl -O -a lat,lon -w gw in.nc out.nc
- # TREFHT = 289.239960
- # TREFHT_dbl = 289.239964
- First note that the 'TREFHT_dbl' average never changes because
-'TREFHT_dbl(lat,lon)' is double-precision in the input file. As
-described above, NCO automatically converts all operands involving to
-the highest precision involved in the operation. So specifying '--dbl'
-is redundant for double-precision inputs.
-
- Second, the single-precision arithmetic averages of the
-single-precision input 'TREFHT' differ by 289.246735 - 289.226135 =
-0.0206 from eachother, and, more importantly, by as much as 289.239964 -
-289.226135 = 0.013829 from the correct (double-precision) answer. These
-averages differ in the fifth digit, i.e., they agree only to four
-significant figures! Given that climate scientists are concerned about
-global temperature variations of a tenth of a degree or less, this
-difference is large. It means that the global mean temperature changes
-scientists are looking for are comparable in size to the numerical
-artifacts produced by the averaging procedure.
-
- Why are the single-precision numerical artifacts so large? Each
-global average is the result of multiplying almost 15,000 elements each
-by its weight, summing those, and then dividing by the summed weights.
-Thus about 50,000 single-precision floating point operations caused the
-loss of two to three significant digits of precision. The net error of
-a series of independent rounding errors is a random walk phenomena (5).
-Successive rounding errors displace the answer further from the truth.
-An ensemble of such averages will, on average, have no net bias. In
-other words, the expectation value of a series of IEEE rounding errors
-is zero. And the error of any given sequence of rounding errors obeys,
-for large series, a Gaussian distribution centered on zero.
-
- Single-precision numbers use three of their four eight-bit bytes to
-represent the mantissa so the smallest representable single-precision
-mantissa is \epsilon \equiv 2^{-23} = 1.19209 \times 10^{-7}. This
-\epsilon is the smallest X such that 1.0 + x \ne 1.0. This is the
-rounding error for non-exact precision-numbers. Applying random walk
-theory to rounding, it can be shown that the expected rounding error
-after N inexact operations is \sqrt{2n/\pi} for large N. The expected
-(i.e., mean absolute) rounding error in our example with 13,824
-additions is about \sqrt{2 \times 13824 / \pi} = 91.96. Hence, addition
-alone of about fifteen thousand single-precision floats is expected to
-consume about two significant digits of precision. This neglects the
-error due to the inner product (weights times values) and normalization
-(division by tally) aspects of a weighted average. the ratio of two
-numbers each containing a numerical bias can magnify the size of the
-bias. In summary, a global mean number computed from about 15,000
-gridpoints each with weights can be expected to lose up to three
-significant digits. Since single-precision starts with about seven
-significant digits, we should not expect to retain more than four
-significant digits after computing weighted averages in
-single-precision. The above example with 'TREFHT' shows the expected
-four digits of agreement.
-
- The NCO results have been independently validated to the extent
-possible in three other languages: C, Matlab, and NCL. C and NCO are
-the only languages that permit single-precision numbers to be treated
-with single precision arithmetic:
- # Double-precision weight (gw), single-precision arithmetic (C)
- ncwa_3528514.exe
- # TREFHT = 289.240112
- # Double-precision weight (gw), double-precision arithmetic (C)
- # TREFHT = 289.239964
- # Single-precision weight (area), double-precision arithmetic (Matlab)
- # TREFHT = 289.239964
- # Double-precision weight (gw), double-precision arithmetic (Matlab)
- # TREFHT = 289.239964
- # Single-precision weight (area), double-precision arithmetic (NCL)
- ncl < ncwa_3528514.ncl
- # TREFHT = 289.239960
- # TREFHT_dbl = 289.239964
- # Double-precision weight (gw), double-precision arithmetic (NCL)
- # TREFHT = 289.239960
- # TREFHT_dbl = 289.239964
- All languages tested (C, Matlab, NCL, and NCO) agree to machine
-precision with double-precision arithmetic. Users are fortunate to have
-a variety of high quality software that liberates them from the drudgery
-of coding their own. Many packages are free (as in beer)! As shown
-above NCO permits one to shift to their float-promotion preferences as
-desired. No other language allows this with a simple switch.
-
- To summarize, until version 4.3.6 (September, 2013), the default
-arithmetic convention of NCO adhered to Fortran behavior, and
-automatically promoted single-precision to double-precision in all
-mixed-precision expressions, and left-alone pure single-precision
-expressions. This is faster and more memory efficient than other
-conventions. However, pure single-precision arithmetic can lose too
-much precision when used to condense (e.g., average) large arrays.
-Statistics involving about n = 10,000 single-precision inputs will lose
-about 2-3 digits if not promoted to double-precision prior to
-arithmetic. The loss scales with the squareroot of N. For larger N,
-users should promote floats with the '--dbl' option if they want to
-preserve more than four significant digits in their results.
-
- The '--dbl' and '--flt' switches are only available with the NCO
-arithmetic operators that could potentially perform more than a few
-single-precision floating point operations per result. These are
-'nces', 'ncra', and 'ncwa'. Each is capable of thousands to millions or
-more operations per result. By contrast, the arithmetic operators
-'ncbo' and 'ncflint' perform at most one floating point operation per
-result. Providing the '--dbl' option for such trivial operations makes
-little sense, so the option is not currently made available.
-
- We are interested in users' opinions on these matters. The default
-behavior was changed from '--flt' to '--dbl' with the release of NCO
-version 4.3.6 (October 2013). We will change the default back to
-'--flt' if users prefer. Or we could set a threshold (e.g., n \ge
-10000) after which single- to double-precision promotion is
-automatically invoked. Or we could make the default promotion
-convention settable via an environment variable (GSL does this a lot).
-Please let us know what you think of the selected defaults and options.
-
- ---------- Footnotes ----------
-
- (1) According to Wikipedia's summary of IEEE standard 754, "If a
-decimal string with at most 6 significant digits is converted to IEEE 754
-single-precision and then converted back to the same number of
-significant decimal, then the final string should match the original;
-and if an IEEE 754 single-precision is converted to a decimal string
-with at leastn 9 significant decimal and then converted back to single,
-then the final number must match the original".
-
- (2) According to Wikipedia's summary of IEEE standard 754, "If a
-decimal string with at most 15 significant digits is converted to IEEE 754
-double-precision representation and then converted back to a string with
-the same number of significant digits, then the final string should
-match the original; and if an IEEE 754 double precision is converted to
-a decimal string with at least 17 significant digits and then converted
-back to double, then the final number must match the original".
-
- (3) See page 21 in Section 1.2 of the First edition for this gem:
- One does not need much experience in scientific computing to
- recognize that the implicit conversion rules are, in fact, sheer
- madness! In effect, they make it impossible to write efficient
- numerical programs.
-
- (4) For example, the CMIP5 archive tends to distribute monthly
-average timeseries in 50-year chunks.
-
- (5) Thanks to Michael J. Prather for explaining this to me.
-
-3.34.3 Manual type conversion
------------------------------
-
-'ncap2' provides intrinsic functions for performing manual type
-conversions. This, for example, converts variable 'tpt' to external
-type 'NC_SHORT' (a C-type 'short'), and variable 'prs' to external type
-'NC_DOUBLE' (a C-type 'double').
- ncap2 -s 'tpt=short(tpt);prs=double(prs)' in.nc out.nc
- *Note ncap2 netCDF Arithmetic Processor::, for more details.
-
-3.35 Batch Mode
-===============
-
-Availability: All operators
-Short options: '-O', '-A'
-Long options: '--ovr', '--overwrite', '--apn', '--append'
- If the OUTPUT-FILE specified for a command is a pre-existing file,
-then the operator will prompt the user whether to overwrite (erase) the
-existing OUTPUT-FILE, attempt to append to it, or abort the operation.
-However, interactive questions reduce productivity when processing large
-amounts of data. Therefore NCO also implements two ways to override its
-own safety features, the '-O' and '-A' switches. Specifying '-O' tells
-the operator to overwrite any existing OUTPUT-FILE without prompting the
-user interactively. Specifying '-A' tells the operator to attempt to
-append to any existing OUTPUT-FILE without prompting the user
-interactively. These switches are useful in batch environments because
-they suppress interactive keyboard input. NB: As of 20120515, 'ncap2'
-is unable to append to files that already contain the appended
-dimensions.
-
-3.36 History Attribute
-======================
-
-Availability: All operators
-Short options: '-h'
-Long options: '--hst', '--history'
- All operators automatically append a 'history' global attribute to
-any file they create or modify. The 'history' attribute consists of a
-timestamp and the full string of the invocation command to the operator,
-e.g., 'Mon May 26 20:10:24 1997: ncks in.nc foo.nc'. The full contents
-of an existing 'history' attribute are copied from the first INPUT-FILE
-to the OUTPUT-FILE. The timestamps appear in reverse chronological
-order, with the most recent timestamp appearing first in the 'history'
-attribute. Since NCO and many other netCDF operators adhere to the
-'history' convention, the entire data processing path of a given netCDF
-file may often be deduced from examination of its 'history' attribute.
-As of May, 2002, NCO is case-insensitive to the spelling of the
-'history' attribute name. Thus attributes named 'History' or 'HISTORY'
-(which are non-standard and not recommended) will be treated as valid
-history attributes. When more than one global attribute fits the
-case-insensitive search for "history", the first one found will be used.
-'history' attribute To avoid information overkill, all operators have an
-optional switch ('-h', '--hst', or '--history') to override
-automatically appending the 'history' attribute (*note ncatted netCDF
-Attribute Editor::). Note that the '-h' switch also turns off writing
-the 'nco_input_file_list' attribute for multi-file operators (*note File
-List Attributes::).
-
-3.37 File List Attributes
-=========================
-
-Availability: 'nces', 'ncecat', 'ncra', 'ncrcat'
-Short options: '-H'
-Long options: '--fl_lst_in', '--file_list'
- Many methods of specifying large numbers of input file names pass
-these names via pipes, encodings, or argument transfer programs (*note
-Large Numbers of Files::). When these methods are used, the input file
-list is not explicitly passed on the command line. This results in a
-loss of information since the 'history' attribute no longer contains the
-exact command by which the file was created.
-
- NCO solves this dilemma by archiving input file list attributes.
-When the input file list to a multi-file operator is specified via
-'stdin', the operator, by default, attaches two global attributes to any
-file they create or modify. The 'nco_input_file_number' global
-attribute contains the number of input files, and 'nco_input_file_list'
-contains the file names, specified as standard input to the multi-file
-operator. This information helps to verify that all input files the
-user thinks were piped through 'stdin' actually arrived. Without the
-'nco_input_file_list' attribute, the information is lost forever and the
-"chain of evidence" would be broken.
-
- The '-H' switch overrides (turns off) the default behavior of writing
-the input file list global attributes when input is from 'stdin'. The
-'-h' switch does this too, and turns off the 'history' attribute as well
-(*note History Attribute::). Hence both switches allows space-conscious
-users to avoid storing what may amount to many thousands of filenames in
-a metadata attribute.
-
-3.38 CF Conventions
-===================
-
-Availability: 'ncbo', 'nces', 'ncecat', 'ncflint', 'ncpdq', 'ncra',
-'ncwa'
-Short options: None
- NCO recognizes some Climate and Forecast (CF) metadata conventions,
-and applies special rules to such data. NCO was contemporaneous with
-COARDS and still contains some rules to handle older NCAR model
-datasets, such as CCM and early CCSM datasets, that pre-date CF. Such
-datasets may not contain an explicit 'Conventions' attribute (e.g.,
-'CF-1.0'). Nevertheless, we refer to all such metadata collectively as
-CF metadata. Skip this section if you never work with CF metadata.
-
- The latest CF netCDF conventions are described here
-(http://cfconventions.org/1.6.html). Most CF netCDF conventions are
-transparent to NCO (1). There are no known pitfalls associated with
-using any NCO operator on files adhering to these conventions (2).
-However, to facilitate maximum user friendliness, NCO applies special
-rules to certain variables in CF files. The special functions are not
-required by the CF netCDF conventions, yet experience shows that they
-simplify data analysis.
-
- Currently, NCO determines whether a datafile is a CF output datafile
-simply by checking (case-insensitively) whether the value of the global
-attribute 'Conventions' (if any) equals 'CF-1.0' or 'NCAR-CSM' Should
-'Conventions' equal either of these in the (first) INPUT-FILE, NCO will
-apply special rules to certain variables because of their usual meaning
-in CF files. NCO will not average the following variables often found
-in CF files: 'ntrm', 'ntrn', 'ntrk', 'ndbase', 'nsbase', 'nbdate',
-'nbsec', 'mdt', 'mhisf'. These variables contain scalar metadata such
-as the resolution of the host geophysical model and it makes no sense to
-change their values.
-
- Furthermore, the "size and rank-preserving arithmetic operators" try
-not to operate on certain grid properties. These operators are 'ncap2',
-'ncbo', 'nces', 'ncflint', and 'ncpdq' (when used for packing, not for
-permutation). These operators do not operate, by default, on (i.e.,
-add, subtract, pack, etc.) the following variables: 'ORO', 'area',
-'datesec', 'date', 'gw', 'hyai', 'hyam', 'hybi'. 'hybm', 'lat_bnds',
-'lon_bnds', 'msk_*'. These variables represent the Gaussian weights,
-the orography field, time fields, hybrid pressure coefficients, and
-latititude/longitude boundaries. We call these fields non-coordinate
-"grid properties". Coordinate grid properties are easy to identify
-because they are coordinate variables such as 'latitude' and
-'longitude'.
-
- Users usually want _all_ grid properties to remain unaltered in the
-output file. To be treated as a grid property, the variable name must
-_exactly_ match a name in the above list, or be a coordinate variable.
-The handling of 'msk_*' is exceptional in that _any_ variable name
-beginning with the string 'msk_' is considered to be a "mask" and is
-thus preserved (not operated on arithmetically).
-
- You must spoof NCO if you would like any grid properties or other
-special CF fields processed normally. For example rename the variables
-first with 'ncrename', or alter the 'Conventions' attribute.
-
- As of NCO version 4.0.8 (April, 2011), NCO supports the CF 'bounds'
-convention for cell boundaries described here
-(http://cfconventions.org/1.6.html#cell-boundaries). This convention
-allows coordinate variables (including multidimensional coordinates) to
-describe the boundaries of their cells. This is done by naming the
-variable which contains the bounds in in the 'bounds' attribute. Note
-that coordinates of rank N have bounds of rank N+1. NCO-generated
-subsets of CF-compliant files with 'bounds' attributes will include the
-coordinates specified by the 'bounds' attribute, if any. Hence the
-subsets will themselves be CF-compliant. Bounds are subject to the
-user-specified override switches (including '-c' and '-C') described in
-*note Subsetting Coordinate Variables::.
-
- As of NCO version 4.4.5 (July, 2014), NCO supports the CF
-'ancillary_variables' convention for described here
-(http://cfconventions.org/1.6.html#ancillary-data). This convention
-allows ancillary variables to be associated with one or more primary
-variables. NCO attaches any such variables to the extraction list along
-with the primary variable and its usual (one-dimensional) coordinates,
-if any. Ancillary variables are subject to the user-specified override
-switches (including '-c' and '-C') described in *note Subsetting
-Coordinate Variables::.
-
- As of NCO version 3.9.6 (January, 2009), NCO supports the CF
-'coordinates' convention described here
-(http://cfconventions.org/1.6.html#coordinate-system). This convention
-allows variables to specify additional coordinates (including
-multidimensional coordinates) in a space-separated string attribute
-named 'coordinates'. NCO attaches any such coordinates to the
-extraction list along with variable and its usual (one-dimensional)
-coordinates, if any. These auxiliary coordinates are subject to the
-user-specified override switches (including '-c' and '-C') described in
-*note Subsetting Coordinate Variables::.
-
- As of NCO version 4.4.2 (February, 2014), NCO supports some of the CF
-'cell_methods' convention
-(http://cfconventions.org/1.6.html#cell-methods) to describe the
-analysis procedures that have been applied to data. The convention
-creates (or appends to an existing) 'cell_methods' attribute a
-space-separated list of couplets of the form DMN: OP where DMN is a
-comma-separated list of dimensions previously contained in the variable
-that have been reduced by the arithmetic operation OP. For example, the
-'cell_methods' value 'time: mean' says that the variable in question was
-averaged over the 'time' dimension. In such cases 'time' will either be
-a scalar variable or a degenerate dimension or coordinate. This simply
-means that it has been averaged-over. The value 'time, lon: mean lat:
-max' says that the variable in question is the maximum zonal mean of the
-time averaged original variable. Which is to say that the variable was
-first averaged over time and longitude, and then the residual
-latitudinal array was reduced by choosing the maximum value. Since the
-'cell methods' convention may alter metadata in an undesirable (or
-possibly incorrect) fashion, we provide switches to ensure it is always
-or never used. Use long-options '--cll_mth' or '--cell_methods' to
-invoke the algorithm (true by default), and options '--no_cll_mth' or
-'--no_cell_methods' to turn it off. These options are only available in
-the operators 'ncwa' and 'ncra'.
-
- ---------- Footnotes ----------
-
- (1) The exception is appending/altering the attributes 'x_op',
-'y_op', 'z_op', and 't_op' for variables which have been averaged across
-space and time dimensions. This feature is scheduled for future
-inclusion in NCO.
-
- (2) The CF conventions recommend 'time' be stored in the format TIME
-since BASE_TIME, e.g., the 'units' attribute of 'time' might be 'days
-since 1992-10-8 15:15:42.5 -6:00'. A problem with this format occurs
-when using 'ncrcat' to concatenate multiple files, each with a different
-BASE_TIME. That is, any 'time' values from files following the first
-file to be concatenated should be corrected to the BASE_TIME offset
-specified in the 'units' attribute of 'time' from the first file. The
-analogous problem has been fixed in ARM files (*note ARM Conventions::)
-and could be fixed for CF files if there is sufficient lobbying.
-
-3.39 ARM Conventions
-====================
-
-Availability: 'ncrcat'
-Short options: None
- 'ncrcat' has been programmed to correctly handle data files which
-utilize the Atmospheric Radiation Measurement (ARM) Program convention
-(http://www.arm.gov/data/time.stm) for time and time offsets. If you do
-not work with ARM data then you may skip this section. ARM data files
-store time information in two variables, a scalar, 'base_time', and a
-record variable, 'time_offset'. Subtle but serious problems can arise
-when these type of files are just blindly concatenated. Therefore
-'ncrcat' has been specially programmed to be able to chain together
-consecutive ARM INPUT-FILES and produce and an OUTPUT-FILE which
-contains the correct time information. Currently, 'ncrcat' determines
-whether a datafile is an ARM datafile simply by testing for the
-existence of the variables 'base_time', 'time_offset', and the dimension
-'time'. If these are found in the INPUT-FILE then 'ncrcat' will
-automatically perform two non-standard, but hopefully useful,
-procedures. First, 'ncrcat' will ensure that values of 'time_offset'
-appearing in the OUTPUT-FILE are relative to the 'base_time' appearing
-in the first INPUT-FILE (and presumably, though not necessarily, also
-appearing in the OUTPUT-FILE). Second, if a coordinate variable named
-'time' is not found in the INPUT-FILES, then 'ncrcat' automatically
-creates the 'time' coordinate in the OUTPUT-FILE. The values of 'time'
-are defined by the ARM conventions TIME = BASE_TIME + TIME_OFFSET.
-Thus, if OUTPUT-FILE contains the 'time_offset' variable, it will also
-contain the 'time' coordinate. A short message is added to the
-'history' global attribute whenever these ARM-specific procedures are
-executed.
-
-3.40 Operator Version
-=====================
-
-Availability: All operators
-Short options: '-r'
-Long options: '--revision', '--version', or '--vrs'
- All operators can be told to print their version information, library
-version, copyright notice, and compile-time configuration with the '-r'
-switch, or its long-option equivalent 'revision'. The '--version' or
-'--vrs' switches print the operator version information only. The
-internal version number varies between operators, and indicates the most
-recent change to a particular operator's source code. This is useful in
-making sure you are working with the most recent operators. The version
-of NCO you are using might be, e.g., '3.9.5'. Using '-r' on, say,
-'ncks', produces something like 'NCO netCDF Operators version "3.9.5"
-last modified 2008/05/11 built May 12 2008 on neige by zender Copyright
-(C) 1995--2008 Charlie Zender ncks version 20090918'. This tells you
-that 'ncks' contains all patches up to version '3.9.5', which dates from
-May 11, 2008.
-
-4 Reference Manual
-******************
-
-This chapter presents reference pages for each of the operators
-individually. The operators are presented in alphabetical order. All
-valid command line switches are included in the syntax statement.
-Recall that descriptions of many of these command line switches are
-provided only in *note Shared features::, to avoid redundancy. Only
-options specific to, or most useful with, a particular operator are
-described in any detail in the sections below.
-
-4.1 'ncap2' netCDF Arithmetic Processor
-=======================================
-
-'ncap2' understands a relatively full-featured language of operations,
-including loops, conditionals, arrays, and math functions. 'ncap2' is
-the most rapidly changing NCO operator and its documentation is
-incomplete. The distribution file 'data/ncap2_tst.nco' contains an
-up-to-date overview of its syntax and capabilities. The 'data/*.nco'
-distribution files (especially 'bin_cnt.nco', 'psd_wrf.nco', and
-'rgr.nco') contain in-depth examples of 'ncap2' solutions to complex
-problems.
-
-SYNTAX
- ncap2 [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [-D DBG] [-F] [-f] [-h] [--hdf] [--hdr_pad NBR] [-L DFL_LVL] [-l PATH]
- [--no_tmp_fl] [-O] [-o OUTPUT-FILE] [-p PATH] [-R] [-r] [--ram_all]
- [-s ALGEBRA] [-S FL.NCO] [-t THR_NBR] [-v]
- INPUT-FILE [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncap2' arithmetically processes netCDF files (1). The processing
-instructions are contained either in the NCO script file 'fl.nco' or in
-a sequence of command line arguments. The options '-s' (or long options
-'--spt' or '--script') are used for in-line scripts and '-S' (or long
-options '--fl_spt' or '--script-file') are used to provide the filename
-where (usually multiple) scripting commands are pre-stored. 'ncap2' was
-written to perform arbitrary algebraic transformations of data and
-archive the results as easily as possible. *Note Missing Values::, for
-treatment of missing values. The results of the algebraic manipulations
-are called "derived fields".
-
- Unlike the other operators, 'ncap2' does not accept a list of
-variables to be operated on as an argument to '-v' (*note Subsetting
-Files::). Rather, the '-v' switch takes no arguments and indicates that
-'ncap2' should output _only_ user-defined variables. 'ncap2' neither
-accepts nor understands the -X switch. NB: As of 20120515, 'ncap2' is
-unable to append to files that already contain the appended dimensions.
-
- Defining new variables in terms of existing variables is a powerful
-feature of 'ncap2'. Derived fields inherit the metadata (i.e.,
-attributes) of their ancestors, if any, in the script or input file.
-When the derived field is completely new (no identically-named ancestors
-exist), then it inherits the metadata (if any) of the left-most variable
-on the right hand side of the defining expression. This metadata
-inheritance is called "attribute propagation". Attribute propagation is
-intended to facilitate well-documented data analysis, and we welcome
-suggestions to improve this feature.
-
- The only exception to this rule of attribute propagation is in cases
-of left hand casting (*note Left hand casting::). The user must
-manually define the proper metadata for variables defined using left
-hand casting.
-
- ---------- Footnotes ----------
-
- (1) 'ncap2' is the successor to 'ncap' which was put into maintenance
-mode in November, 2006. This documentation refers to 'ncap2', which has
-a superset of the 'ncap' functionality. Eventually 'ncap' will be
-deprecated in favor 'ncap2'. 'ncap2' may be renamed 'ncap' in 2013.
-
-4.1.1 Syntax of 'ncap2' statements
-----------------------------------
-
-Mastering 'ncap2' is relatively simple. Each valid statement STATEMENT
-consists of standard forward algebraic expression. The 'fl.nco', if
-present, is simply a list of such statements, whitespace, and comments.
-The syntax of statements is most like the computer language C. The
-following characteristics of C are preserved:
-Array syntax
- Arrays elements are placed within '[]' characters;
-Array indexing
- Arrays are 0-based;
-Array storage
- Last dimension is most rapidly varying;
-Assignment statements
- A semi-colon ';' indicates the end of an assignment statement.
-Comments
- Multi-line comments are enclosed within '/* */' characters. Single
- line comments are preceded by '//' characters.
-Nesting
- Files may be nested in scripts using '#include SCRIPT'. Note that
- the '#include' command is not followed by a semi-colon because it
- is a pre-processor directive, not an assignment statement. The
- filename 'script' is interpreted relative to the run directory.
-Attribute syntax
- The at-sign '@' is used to delineate an attribute name from a
- variable name.
-
-4.1.2 Expressions
------------------
-
-Expressions are the fundamental building block of 'ncap2'. Expressions
-are composed of variables, numbers, literals, and attributes. The
-following C operators are "overloaded" and work with scalars and
-multi-dimensional arrays:
- Arithmetic Operators: * / % + - ^
- Binary Operators: > >= < <= == != == || && >> <<
- Unary Operators: + - ++ -- !
- Conditional Operator: exp1 ? exp2 : exp3
- Assign Operators: = += -= /= *=
-
- In the following section a "variable" also refers to a number literal
-which is read in as a scalar variable:
-
- *Arithmetic and Binary Operators *
-
- Consider _var1 'op' var2_
-
- *Precision*
- * When both operands are variables, the result has the precision of
- the higher precision operand.
- * When one operand is a variable and the other an attribute, the
- result has the precision of the variable.
- * When both operands are attributes, the result has the precision of
- the more precise attribute.
- * The exponentiation operator "^" is an exception to the above rules.
- When both operands have type less than 'NC_FLOAT', the result is
- 'NC_FLOAT'. When either type is 'NC_DOUBLE', the result is also
- 'NC_DOUBLE'.
-
- *Rank*
- * The Rank of the result is generally equal to Rank of the operand
- that has the greatest number of dimensions.
- * If the dimensions in var2 are a subset of the dimensions in var1
- then its possible to make var2 conform to var1 through broadcasting
- and or dimension reordering.
- * Broadcasting a variable means creating data in non-existing
- dimensions by copying data in existing dimensions.
- * More specifically: If the numbers of dimensions in var1 is greater
- than or equal to the number of dimensions in var2 then an attempt
- is made to make var2 conform to var1 ,else var1 is made to conform
- to var2. If conformance is not possible then an error message will
- be emitted and script execution will cease.
-
-Even though the logical operators return True(1) or False(0) they are
-treated in the same way as the arithmetic operators with regard to
-precision and rank.
-Examples:
-
- dimensions: time=10, lat=2, lon=4
- Suppose we have the two variables:
-
- double P(time,lat,lon);
- float PZ0(lon,lat); // PZ0=1,2,3,4,5,6,7,8;
-
- Consider now the expression:
- PZ=P-PZ0
-
- PZ0 is made to conform to P and the result is
- PZ0 =
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
-
- Once the expression is evaluated then PZ will be of type double;
-
- Consider now
- start=four-att_var at double_att; // start =-69 and is of type intger;
- four_pow=four^3.0f // four_pow=64 and is of type float
- three_nw=three_dmn_var_sht*1.0f; // type is now float
- start at n1=att_var at short_att*att_var at int_att;
- // start at n1=5329 and is type int
-
-*Binary Operators*
-Unlike C the binary operators return an array of values. There is no
-such thing as short circuiting with the AND/OR operators. Missing
-values are carried into the result in the same way they are with the
-arithmetic operators. When an expression is evaluated in an if() the
-missing values are treated as true.
-The binary operators are, in order of precedence:
-
- ! Logical Not
- ----------------------------
- << Less Than Selection
- >> Greater Than Selection
- ----------------------------
- > Greater than
- >= Greater than or equal to
- < Less than
- <= Less than or equal to
- ----------------------------
- == Equal to
- != Not equal to
- ----------------------------
- && Logical AND
- ----------------------------
- || Logical OR
- ----------------------------
-
- To see all operators: *note Operator precedence and associativity::
-Examples:
- tm1=time>2 && time <7; // tm1=0, 0, 1, 1, 1, 1, 0, 0, 0, 0 double
- tm2=time==3 || time>=6; // tm2=0, 0, 1, 0, 0, 1, 1, 1, 1, 1 double
- tm3=int(!tm1); // tm3=1, 1, 0, 0, 0, 0, 1, 1, 1, 1 int
- tm4=tm1 && tm2; // tm4=0, 0, 1, 0, 0, 1, 0, 0, 0, 0 double
- tm5=!tm4; // tm5=1, 1, 0, 1, 1, 0, 1, 1, 1, 1 double
-
-*Regular Assign Operator*
-_var1 '=' exp1_
-If var1 does not already exist in Output then var1 is written to Output
-with the values and dimensions from expr1. If var1 already exists in
-Output, then the only requirement on expr1 is that the number of
-elements must match the number already on disk. The type of expr1 is
-converted if necessary to the disk type.
-
-* Other Assign Operators +=,-=,*=./= *
-_var1 'ass_op' exp1 _
-if exp1 is a variable and it doesn't conform to var1 then an attempt is
-made to make it conform to var1. If exp1 is an attribute it must have
-unity size or else have the same number of elements as var1. If expr1
-has a different type to var1 the it is converted to the var1 type.
- z1=four+=one*=10 // z1=14 four=14 one=10;
- time-=2 // time= -1,0,1,2,3,4,5,6,7,8
-
-*Increment/Decrement Operators
-* These work in a similar fashion to their regular C counterparts. If
-say the variable 'four' is input only then the statement '++four'
-effectively means read 'four' from input increment each element by one,
-then write the new values to Output;
-
- Example:
- n2=++four; n2=5, four=5
- n3=one--+20; n3=21 one=0;
- n4=--time; n4=time=0.,1.,2.,3.,4.,5.,6.,7.,8.,9.;
-
-*Conditional Operator ?: *
-_exp1 ? exp2 : exp3 _
-The conditional operator (or ternary Operator) is a succinct way of
-writing an if/then/else. If exp1 evaluates to true then exp2 is
-returned else exp3 is returned.
-
- Example:
- weight_avg=weight.avg();
- weight_avg at units= (weight_avg == 1 ? "kilo" : "kilos");
- PS_nw=PS-(PS.min() > 100000 ? 100000 : 0);
-
-*Clipping Operators*
-<< Less-than Clipping
- For arrays, the less-than selection operator selects all values in
- the left operand that are less than the corresponding value in the
- right operand. If the value of the left side is greater than or
- equal to the corresponding value of the right side, then the right
- side value is placed in the result
->> Greater-than Clipping
- For arrays, the greater-than selection operator selects all values
- in the left operand that are greater than the corresponding value
- in the right operand. If the value of the left side is less than
- or equal to the corresponding value of the right side, then the
- right side value is placed in the result.
-
- Example:
- RDM2=RDM >> 100.0 // 100,100,100,100,126,126,100,100,100,100 double
- RDM2=RDM << 90s // 1, 9, 36, 84, 90, 90, 84, 36, 9, 1 int
-
-4.1.3 Dimensions
-----------------
-
-Dimensions are defined in Output using the 'defdim()' function.
- defdim("cnt",10); # Dimension size is fixed by default
- defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dimension)
- defdim("cnt",10,0); # Dimension is unlimited (record dimension)
- defdim("cnt",10,1); # Dimension size is fixed
- defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed
-
- This dimension name must then be prefixed with a dollar-sign '$' when
-referred to in method arguments or left-hand-casting, e.g.,
- new_var[$cnt]=time;
- temperature[$time,$lat,$lon]=35.5;
- temp_avg=temperature.avg($time);
-
- The 'size' method allows the dimension size to be used in an
-arithmetic expression:
- time_avg=time.total() / $time.size;
-
- Increase the size of a new variable by one and set new member to
-zero:
- defdim("cnt_new",$cnt.size+1);
- new_var[$cnt_new]=0.0;
- new_var(0:($cnt_new.size-2))=old_var;
-
-*Dimension Abbreviations
-* It is possible to use dimension abbreviations as method arguments:
-'$0' is the first dimension of a variable
-'$1' is the second dimension of a variable
-'$n' is the n+1 dimension of a variable
-
- float four_dmn_rec_var(time,lat,lev,lon);
- double three_dmn_var_dbl(time,lat,lon);
-
- four_nw=four_dmn_rev_var.reverse($time,$lon)
- four_nw=four_dmn_rec_var.reverse($0,$3);
-
- four_avg=four_dmn_rec_var.avg($lat,$lev);
- four_avg=four_dmn_rec_var.avg($1,$2);
-
- three_mw=three_dmn_var_dbl.permute($time,$lon,$lat);
- three_mw=three_dmn_var_dbl.permute($0,$2,$1);
-
-*ID Quoting
-* If the dimension name contains non-regular characters use ID quoting.
-See *note ID Quoting::
- defdim("a--list.A",10);
- A1['$a--list.A']=30.0;
-
-*GOTCHA
-* It is not possible to manually define in Output any dimensions that
-exist in Input. When a variable from Input appears in an expression or
-statement its dimensions in Input are automagically copied to Output (if
-they are not already present)
-
-4.1.4 Left hand casting
------------------------
-
-The following examples demonstrate the utility of the "left hand
-casting" ability of 'ncap2'. Consider first this simple, artificial,
-example. If LAT and LON are one dimensional coordinates of dimensions
-LAT and LON, respectively, then addition of these two one-dimensional
-arrays is intrinsically ill-defined because whether LAT_LON should be
-dimensioned LAT by LON or LON by LAT is ambiguous (assuming that
-addition is to remain a "commutative" procedure, i.e., one that does not
-depend on the order of its arguments). Differing dimensions are said to
-be "orthogonal" to one another, and sets of dimensions which are
-mutually exclusive are orthogonal as a set and any arithmetic operation
-between variables in orthogonal dimensional spaces is ambiguous without
-further information.
-
- The ambiguity may be resolved by enumerating the desired dimension
-ordering of the output expression inside square brackets on the left
-hand side (LHS) of the equals sign. This is called "left hand casting"
-because the user resolves the dimensional ordering of the RHS of the
-expression by specifying the desired ordering on the LHS.
- ncap2 -s 'lat_lon[lat,lon]=lat+lon' in.nc out.nc
- ncap2 -s 'lon_lat[lon,lat]=lat+lon' in.nc out.nc
- The explicit list of dimensions on the LHS, '[lat,lon]' resolves the
-otherwise ambiguous ordering of dimensions in LAT_LON. In effect, the
-LHS "casts" its rank properties onto the RHS. Without LHS casting, the
-dimensional ordering of LAT_LON would be undefined and, hopefully,
-'ncap2' would print an error message.
-
- Consider now a slightly more complex example. In geophysical models,
-a coordinate system based on a blend of terrain-following and
-density-following surfaces is called a "hybrid coordinate system". In
-this coordinate system, four variables must be manipulated to obtain the
-pressure of the vertical coordinate: PO is the domain-mean surface
-pressure offset (a scalar), PS is the local (time-varying) surface
-pressure (usually two horizontal spatial dimensions, i.e. latitude by
-longitude), HYAM is the weight given to surfaces of constant density
-(one spatial dimension, pressure, which is orthogonal to the horizontal
-dimensions), and HYBM is the weight given to surfaces of constant
-elevation (also one spatial dimension). This command constructs a
-four-dimensional pressure 'prs_mdp' from the four input variables of
-mixed rank and orthogonality:
- ncap2 -s 'prs_mdp[time,lat,lon,lev]=P0*hyam+PS*hybm' in.nc out.nc
- Manipulating the four fields which define the pressure in a hybrid
-coordinate system is easy with left hand casting.
-
-4.1.5 Arrays and hyperslabs
----------------------------
-
-Generating a regularly spaced one-dimensional array with 'ncap2' is
-simple with the 'array()' function. The syntax is
- var_out=array(val_srt,val_ncr,$dmn_nm); // One-dimensional output
- var_out=array(val_srt,val_ncr,var_tpl); // Multi-dimensional output
-where the arguments are the starting value VAL_SRT, incremental value
-VAL_NCR, and, for one-dimensional output, the single dimension
-'$dmn_nm', or, for multi-dimensional output, a template variable
-'var_tpl', i.e., a variable with the same shape as the desired output.
-The type of 'var_out' will be the same as 'val_srt'. Be sure to encode
-this type with the appropriate decimal point and floating point suffix
-when 'val_srt' is a "naked constant" rather than a variable. For
-example, to produce an array of shorts (signed two-byte integers),
-integers (signed four-byte integers), unsigned 64-bit integers, floats,
-or doubles use
- var_out=array(1s,val_ncr,$dmn_nm); // NC_SHORT array
- var_out=array(1,val_ncr,$dmn_nm); // NC_INT array
- var_out=array(1ull,val_ncr,$dmn_nm); // NC_UINT64 array
- var_out=array(1f,val_ncr,$dmn_nm); // NC_FLOAT array
- var_out=array(1.,val_ncr,$dmn_nm); // NC_DOUBLE array
-
- Once the associated dimensions have been defined, the start and
-increment arguments may be supplied as values, mathmatical expressions,
-or variables:
- var_out=array(1,1,$time); // 1,2,3,4,5,6,7,8,9,10
- var_out=array(1+2-2,one,$time); // 1,2,3,4,5,6,7,8,9,10
- var_out=array(1,2,three_dmn_rec_var); // 1,3,5,...155,157,159
-
- Hyperslabs in 'ncap2' are more limited than hyperslabs with the other
-NCO operators. 'ncap2' does not understand the shell command-line
-syntax used to specify multi-slabs, wrapped co-ordinates, negative
-stride or coordinate value limits. However with a bit of syntactic
-magic they are all are possible. 'ncap2' accepts (in fact, it requires)
-N-hyperslab arguments for a variable of rank N:
- var1(arg1,arg2 ... argN);
- where each hyperslab argument is of the form
- start:end:stride
- and the arguments for different dimensions are separated by commas.
-If START is omitted, it defaults to zero. If END is omitted, it
-defaults to dimension size minus one. If STRIDE is omitted, it defaults
-to one.
-
-If a single value is present then it is assumed that that dimension
-collapses to a single value (i.e., a cross-section). The number of
-hyperslab arguments MUST equal the variable's rank.
-
-*Hyperslabs on the Right Hand Side of an assign
-*
-
- A simple 1D example:
- ($time.size=10)
- od[$time]={20,22,24,26,28,30,32,34,36,38};
-
- od(7); // 34
- od(7:); // 34,36,38
- od(:7); // 20,22,24,26,28,30,32,34
- od(::4); // 20,28,36
- od(1:6:2) // 22,26,30
- od(:) // 20,22,24,26,28,30,32,34,36,38
-
- A more complex three dimensional example:
- ($lat.size=2,$lon.size=4)
- th[$time,$lat,$lon]=
- {1, 2, 3, 4, 5, 6, 7, 8,
- 9,10,11,12,13,14,15,16,
- 17,18,19,20,21,22,23,24,
- -99,-99,-99,-99,-99,-99,-99,-99,
- 33,34,35,36,37,38,39,40,
- 41,42,43,44,45,46,47,48,
- 49,50,51,52,53,54,55,56,
- -99,58,59,60,61,62,63,64,
- 65,66,67,68,69,70,71,72,
- -99,74,75,76,77,78,79,-99 };
-
- th(1,1,3); // 16
- th(2,0,:); // 17, 18, 19, 20
- th(:,1,3); // 8, 16, 24, -99, 40, 48, 56, 64, 72, -99
- th(::5,:,0:3:2); // 1, 3, 5, 7, 41, 43, 45, 47
-
- If hyperslab arguments collapse to a single value (a cross-section
-has been specified), then that dimension is removed from the returned
-variable. If all the values collapse then a scalar variable is
-returned. So, for example, the following is valid:
- th_nw=th(0,:,:)+th(9,:,:);
- // th_nw has dimensions $lon,$lat
- // NB: the time dimension has become degenerate
-
- The following is invalid:
- th_nw=th(0,:,0:1)+th(9,:,0:1);
- because the '$lon' dimension now only has two elements. The above
-can be calculated by using a LHS cast with '$lon_nw' as replacement dim
-for '$lon':
- defdim("lon_nw",2);
- th_nw[$lat,$lon_nw]=th(0,:,0:1) +th(9,:,0:1);
-
-*Hyperslabs on the Left Hand Side of an assign
-* When hyperslabing on the LHS, the expression on the RHS must evaluate
-to a scalar or a variable/attribute with the same number of elements as
-the LHS hyperslab. Set all elements of the last record to zero:
- th(9,:,:)=0.0;
- Set first element of each lon element to 1.0:
- th(:,:,0)=1.0;
- One may hyperslab on both sides of an assign. For example, this sets
-the last record to the first record:
- th(9,:,:)=th(0,:,:);
- Say TH0 represents pressure at height=0 and TH1 represents pressure
-at height=1. Then it is possible to insert these hyperslabs into the
-records
- prs[$time,$height,$lat,$lon]=0.0;
- prs(:,0,:,:)=th0;
- prs(:,1,:,:)=th1
-
-*Reverse method*
-Use the 'reverse()' method to reverse a dimension's elements in a
-variable with at least one dimension. This is equivalent to a negative
-stride, e.g.,
- th_rv=th(1 ,:,:).reverse($lon); // {12,11,10,9 }, {16,15,14,13}
- od_rv=od.reverse($time); // {38,36,34,32,30,28,26,24,22,20}
-
-*Permute method*p
-Use the 'permute()' method to swap the dimensions of a variable. The
-number and names of dimension arguments must match the dimensions in the
-variable. If the first dimension in the variable is of record type then
-this must remain the first dimension. If you want to change the record
-dimension then consider using 'ncpdq'.
-
- Consider the variable:
- float three_dmn_var(lat,lev,lon);
- three_dmn_var_prm=three_dmn_var.permute($lon,$lat,$lev);
- // The permuted values are
- three_dmn_var_prm=
- 0,4,8,
- 12,16,20,
- 1,5,9,
- 13,17,21,
- 2,6,10,
- 14,18,22,
- 3,7,11,
- 15,19,23;
-
-4.1.6 Attributes
-----------------
-
-Attributes are referred to by _var_nm at att_nm_
-All the following are valid statements:
- global at text="Test Attributes"; /* Assign a global variable attribute */
- a1[$time]=time*20;
- a1 at long_name="Kelvin";
- a1 at min=a1.min();
- a1 at max=a1.max();
- a1 at min++;
- --a1 at max; q
- a1(0)=a1 at min;
- a1($time.size-1)=a1 at max;
-
- A _value list_ can be used on the RHS of an assign...
- a1 at trip1={1,2,3} ;
- a1 at triplet={a1 at min,(a1 at min+a1@max)/2,a1 at max};
- The netCDF specification allows all attribute types to have a size
-greater than one. The maximum is defined by 'NC_MAX_ATTRS'. The
-following is an 'ncdump' of the metadata for variable A1
- double a1(time) ;
- a1:long_name = "Kelvin" ;
- a1:max = 199. ;
- a1:min = 21. ;
- a1:trip1 = 1, 2, 3 ;
- a1:triplet = 21., 110., 199. ;
-
- The 'size()' method can be used with attributes. For example, to
-save an attribute text string in a variable,
- defdim("sng_len", a1 at long_name.size());
- sng_arr[$sng_len]=a1 at long_name; // sng_arr now contains "Kelvin"
- Attributes defined in a script are stored in memory and are written
-to Output after script completion. To stop the attribute being written
-use the ram_delete() method or use a bogus variable name.
-
-*Attribute Propagation and Inheritance*
- * Attribute propagation occurs in a regular assign statement. The
- variable being defined on the LHS gets copies of the attributes
- from the leftermost variable on the RHS.
- * Attribute Inheritance: The LHS variable "inherits" attributes from
- an Input variable with the same name
- * It is possible to have a regular assign statement for which both
- propagation and inheritance occur.
-
- // prs_mdp inherits attributes from P0:
- prs_mdp[time,lat,lon,lev]=P0*hyam+hybm*PS;
- // th_min inherits attributes from three_dmn_var_dbl:
- th_min=1.0 + 2*three_dmn_var_dbl.min($time);
-
- If the attribute name contains non-regular characters use ID quoting.
-See *note ID Quoting::
- 'b..m1 at c--lost'=23;
-
-4.1.7 Number literals
----------------------
-
-The table below lists the postfix character(s) to add to a number
-literal for type cohesion. To use the new netCDF4 types NCO must be
-compiled/linked to the netCDF4 library and the output file must be HDF5.
-
- n1[$time]=1UL; // n1 will now by type @code{NC_UINT}
- n2[$lon]=4b; // n2 will be of type @code{NC_BYTE}
- n3[$lat]=5ull; // n3 will be of type @code{NC_UINT64}
- n3 at a1=6.0d; // attribute will be type @code{NC_DOUBLE}
- n3 at a2=-666L; // attribute will be type @code{NC_INT}
-
- A floating point number without a postfix will default to
-'NC_DOUBLE'. An integer without a postfix will default to type
-'NC_INT'. There is no postfix for characters, use a quoted string
-instead.
- n4[$rlev]=0.1 // n4 will be of type @code{NC_DOUBLE}
- n5[$lon_grd]=2.0 // n5 will be of type @code{NC_DOUBLE}
- n6[$gds_crd]=2e3; // n6 will be of type @code{NC_DOUBLE}
- n7[$gds_crd]=2e3f; // n7 will be of type @code{NC_FLOAT}
- n6 at a1=41; // attribute will be type @code{NC_INT}
- n6 at a2=-21; // attribute will be type @code{NC_INT}
- n6 at units="kelvin" // attribute will be type @code{NC_CHAR}
-
-*netCDF3/4 Types*
-b|B
- 'NC_BYTE', a signed 1-byte integer
-none
- 'NC_CHAR', an ISO/ASCII character
-s|S
- 'NC_SHORT', a signed 2-byte integer
-l|L
- 'NC_INT', a signed 4-byte integer
-f|F
- 'NC_FLOAT', a single-precision (4-byte) floating point number
-d|D
- 'NC_DOUBLE', a double-precision (8-byte) floating point number
-*netCDF4 Types*
-ub|UB
- 'NC_UBYTE', an unsigned 1-byte integer
-us|US
- 'NC_USHORT', an unsigned 2-byte integer
-u|U|ul|UL
- 'NC_UINT', an unsigned 4-byte integer
-ll|LL
- 'NC_INT64', a signed 8-byte integer
-ull|ULL
- 'NC_UINT64', an unsigned 8-byte integer
-
-4.1.8 if statement
-------------------
-
-The syntax of the if statement is similar to its C counterpart. The
-_Conditional Operator (ternary operator)_ has also been implemented.
- if(exp1)
- stmt1;
- else if(exp2)
- stmt2;
- else
- stmt3;
-
- # Can use code blocks as well:
- if(exp1){
- stmt1;
- stmt1a;
- stmt1b;
- }else if(exp2)
- stmt2;
- else{
- stmt3;
- stmt3a;
- stmt3b;
- }
-
-For a variable or attribute expression to be logically true all its
-non-missing value elements must be logically true, i.e., non-zero. The
-expression can be of any type. Unlike C there is no short-circuiting of
-an expression with the OR ('||') and AND ('&&') operators. The whole
-expression is evaluated regardless if one of the AND/OR operands are
-True/False.
- # Simple example
- if(time>0)
- print("All values of time are greater than zero\n");
- else if( time<0)
- print("All values of time are less than zero\n");
- else {
- time_max=time.max();
- time_min=time.min();
- print("min value of time=");print(time_min,"%f");
- print("max value of time=");print(time_max,"%f");
- }
-
- # Example from ddra.nco
- if(fl_typ==fl_typ_gcm){
- var_nbr_apx=32;
- lmn_nbr=1.0*var_nbr_apx*varsz_gcm_4D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_gcm_4D; // Block size
- lmn_nbr_wgt=dmnsz_gcm_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
- }else if(fl_typ==fl_typ_stl){
- var_nbr_apx=8;
- lmn_nbr=1.0*var_nbr_apx*varsz_stl_2D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_stl_2D; // Block size
- lmn_nbr_wgt=dmnsz_stl_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
- } // !fl_typ
-
-*Conditional Operator
-*
- // netCDF4 needed for this example
- th_nw=(three_dmn_var_sht >= 0 ? three_dmn_var_sht.uint() : \
- three_dmn_var_sht.int());
-
-4.1.9 print statement
----------------------
-
- print(variable_name/attribute name/string, format string);
-
-The print function takes a variable name or attribute name or a quoted
-string and prints the contents in a in a similar fashion to 'ncks -H'.
-There is also an optional C-language style format string argument.
-Currently the print function cannot print RAM variables or expressions
-such as ''print(var_msk*3+4)''. To print an expression, first evaluate
-it as a non-RAM variable (so it will be saved and can be printed), and
-then print the variable.
-
-examples
- print(lon);
- lon[0]=0
- lon[1]=90
- lon[2]=180
- lon[3]=270
-
- print(lon_2D_rrg,"%3.2f,");
- 0.00,0.00,180.00,0.00,180.00,0.00,180.00,0.00,
-
- print(mss_val_fst at _FillValue);
- mss_val_fst at _FillValue, size = 1 NC_FLOAT, value = -999
-
- print("This function \t is monotonic\n");
- This function is monotonic
-
-4.1.10 Missing values ncap2
----------------------------
-
-Missing values operate slightly differently in 'ncap2' Consider the
-expression where op is any of the following operators (excluding '=')
- Arithmetic operators ( * / % + - ^ )
- Binary Operators ( >, >= <, <= ==, !=,==,||,&&, >>,<< )
- Assign Operators ( +=,-=,/=, *= )
-
- var1 'op' var2
-
-If var1 has a missing value then this is the value used in the
-operation, otherwise the missing value for var2 is used. If during the
-element-by-element operation an element from either operand is equal to
-the missing value then the missing value is carried through. In this
-way missing values 'percolate' or propagate through an expression.
-Missing values associated with Output variables are stored in memory and
-are written to disk after the script finishes. During script execution
-its possible (and legal) for the missing value of a variable to take on
-several different values.
- # Consider the variable:
- int rec_var_int_mss_val_int(time); =-999,2,3,4,5,6,7,8,-999,-999;
- rec_var_int_mss_val_int:_FillValue = -999;
-
- n2=rec_var_int_mss_val_int + rec_var_int_mss_val_int.reverse($time);
-
- n2=-999,-999,11,11,11,11,11,11,999,-999;
-
- The following methods manipulate missing value information associated
-with a variable. They only work on variables in Output.
-'set_miss(expr)'
- The numeric argument EXPR becomes the new missing value,
- overwriting the old missing value, if any. The argument given is
- converted if necessary to the variable type. NB: This only changes
- the missing value attribute. Missing values in the original
- variable remain unchanged, and thus are no long considered missing
- values. They are "orphaned". Thus 'set_miss()' is normally used
- only when creating new variables. The intrinsic function
- 'change_miss()' (see below) is typically used to edit values of
- existing variables.
-'change_miss(expr)'
- Sets or changes (any pre-existing) missing value attribute and
- missing data values to EXPR. NB: This is an expensive function
- since all values must be examined. Use this function when changing
- missing values for pre-existing variables.
-'get_miss()'
- Returns the missing value of a variable. If the variable exists in
- Input and Output then the missing value of the variable in Output
- is returned. If the variable has no missing value then an error is
- returned.
-'delete_miss()'
- Delete the missing value associated with a variable.
-'number_miss()'
- Count the number of missing values a variable contains.
-
- th=three_dmn_var_dbl;
- th.change_miss(-1e10d);
- /* Set values less than 0 or greater than 50 to missing value */
- where(th < 0.0 || th > 50.0) th=th.get_miss();
-
- # Another example:
- new[$time,$lat,$lon]=1.0;
- new.set_miss(-997.0);
-
- // Extract only elements divisible by 3
- where (three_dmn_var_dbl%3 == 0)
- new=three_dmn_var_dbl;
- elsewhere
- new=new.get_miss();
-
- // Print missing value and variable summary
- mss_val_nbr=three_dmn_var_dbl.number_miss();
- print(three_dmn_var_dbl at _FillValue);
- print("Number of missing values in three_dmn_var_dbl: ");
- print(mss_val_nbr,"%d");
- print(three_dmn_var_dbl);
-
-4.1.11 Methods and functions
-----------------------------
-
-The convention within this document is that methods can be used as
-functions. However, functions are not and cannot be used as methods.
-Methods can be daisy-chained d and their syntax is cleaner than
-functions. Method names are reserved words and CANNOT be used as
-variable names. The command 'ncap2 -f' shows the complete list of
-methods available on your build.
- n2=sin(theta)
- n2=theta.sin()
- n2=sin(theta)^2 + cos(theta)^2
- n2=theta.sin().pow(2) + theta.cos()^2
-
- This statement chains together methods to convert three_dmn_var_sht
-to type double, average it, then convert this back to type short:
- three_avg=three_dmn_var_sht.double().avg().short();
-
-
-*Aggregate Methods
-* These methods mirror the averaging types available in 'ncwa'. The
-arguments to the methods are the dimensions to average over. Specifying
-no dimensions is equivalent to specifying all dimensions i.e., averaging
-over all dimensions. A masking variable and a weighting variable can be
-manually created and applied as needed.
-
-'avg()'
- Mean value
-'sqravg()'
- Square of the mean
-'avgsqr()'
- Mean of sum of squares
-'max()'
- Maximum value
-'min()'
- Minimum value
-'mabs()'
- Maximum absolute value
-'mebs()'
- Mean absolute value
-'mibs()'
- Minimum absolute value
-'rms()'
- Root-mean-square (normalize by N)
-'rmssdn()'
- Root-mean square (normalize by N-1)
-'ttl() or total()'
- Sum of values
-
- // Average a variable over time
- four_time_avg=four_dmn_rec_var($time);
-
-
-* Packing Methods
-* For more information see *note Packed data:: and *note ncpdq netCDF
-Permute Dimensions Quickly::
-'pack() & pack_short()'
- The default packing algorithm is applied and variable is packed to
- 'NC_SHORT'
-'pack_byte()'
- Variable is packed to 'NC_BYTE'
-'pack_short()'
- Variable is packed to 'NC_SHORT'
-'pack_int()'
- Variable is packed to 'NC_INT'
-'unpack()'
- The standard unpacking algorithm is applied.
-
-*Basic Methods
-* These methods work with variables and attributes. They have no
-arguments
-
-'size()'
- Total number of elements
-'ndims()'
- Number of dimensions in variable
-'type()'
- Returns the netcdf type (see previous section)
-
-
-*Utility Methods
-* These functions are used to manipulate missing values and RAM
-variables. *note Missing values ncap2::
-
-'set_miss(expr)'
- Takes one argument the missing value. Sets or overwrites the
- existing missing value. The argument given is converted if
- necessary to the variable type
-'change_miss(expr)'
- Changes the missing value elements of the variable to the new
- missing value (n.b. an expensive function).
-'get_miss()'
- Returns the missing value of a variable in Input or Output
-'delete_miss()'
- Deletes the missing value associated with a variable.
-'ram_write()'
- Writes a RAM variable to disk i.e., converts it to a regular disk
- type variable
-'ram_delete()'
- Deletes a RAM variable or an attribute
-
-
-*PDQ Methods
-* See *note ncpdq netCDF Permute Dimensions Quickly::
-'reverse(dim args)'
- Reverses the dimension ordering of elements in a variable.
-'permute(dim args)'
- Re-shapes variables by re-ordering the dimensions. All the dims of
- the variable must be specified in the arguments. A limitation of
- this permute (unlike ncpdq) is that the record dimension cannot be
- re-assigned.
- // Swap dimensions about and reorder along lon
- lat_2D_rrg_new=lat_2D_rrg.permute($lon,$lat).reverse($lon);
- lat_2D_rrg_new=0,90,-30,30,-30,30,-90,0
-
-
-*Type Conversion Methods
-* These methods allow 'ncap2' to convert variables and attributes to the
-different netcdf types. For more details on automatic and manual type
-conversion see (*note Type Conversion::). You may only use the new
-netCDF4 types if you have compiled/links NCO with the netCDF4 library
-and the Output file is HDF5.
-
-'*netCDF3/4 Types*'
-'byte()'
- convert to 'NC_BYTE', a signed 1-byte integer
-'char()'
- convert to 'NC_CHAR', an ISO/ASCII character
-'short()'
- convert to 'NC_SHORT', a signed 2-byte integer
-'int()'
- convert to 'NC_INT', a signed 4-byte integer
-'float()'
- convert to 'NC_FLOAT', a single-precision (4-byte) floating point
- number
-'double()'
- convert to 'NC_DOUBLE', a double-precision (8-byte) floating point
- number
-'*netCDF4 Types*'
-'ubyte()'
- convert to 'NC_UBYTE', an unsigned 1-byte integer
-'ushort()'
- convert to 'NC_USHORT', an unsigned 2-byte integer
-'uint()'
- convert to 'NC_UINT', an unsigned 4-byte integer
-'int64()'
- convert to 'NC_INT64', a signed 8-byte integer
-'uint64()'
- convert to 'NC_UINT64', an unsigned 8-byte integer
-
-*Intrinsic Mathematical Methods
-* The list of mathematical methods is system dependant. For the full
-list *note Intrinsic mathematical methods::
-
- All the mathematical methods take a single argument except 'atan2()'
-and 'pow()' which take two. If the operand type is less than _float_
-then the result will be of type _float_. Arguments of type _double_
-yield results of type _double_. Like the other methods, you are free to
-use the mathematical methods as functions.
-
- n1=pow(2,3.0f) // n1 type float
- n2=atan2(2,3.0) // n2 type double
- n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n3 type double
-
-4.1.12 RAM variables
---------------------
-
-Unlike regular variables, RAM variables are never written to disk.
-Hence using RAM variables in place of regular variables (especially
-within loops) significantly increases execution speed. Variables that
-are frequently accessed within 'for' or 'where' clauses provide the
-greatest opportunities for optimization. To declare and define a RAM
-variable simply prefix the variable name with an asterisk ('*') when the
-variable is declared/initialized. To delete a RAM variables (and
-recover their memory) use the 'ram_delete()' method. To write a RAM
-variable to disk (like a regular variable) use 'ram_write()'.
- *temp[$time,$lat,$lon]=10.0; // Cast
- *temp_avg=temp.avg($time); // Regular assign
- temp.ram_delete(); // Delete RAM variable
- temp_avg.ram_write(); // Write Variable to output
-
- // Create and increment a RAM variable from "one" in Input
- *one++;
- // Create RAM variables from the variables three and four in Input.
- // Multiply three by 10 and add it to four.
- *four+=*three*=10; // three=30, four=34
-
-4.1.13 Where statement
-----------------------
-
-A 'where()' combines the definition and application of a mask all in one
-go and can lead to succinct code. The full syntax of a 'where()'
-statement is as follows:
-
- // Single assign (the 'elsewhere' block is optional)
- where(mask)
- var1=expr1;
- elsewhere
- var1=expr2;
-
- // Multiple assigns
- where(mask){
- var1=expr1;
- var2=expr2;
- ...
- }elsewhere{
- var1=expr3
- var2=expr4
- var3=expr5;
- ...
- }
-
- * The only expression allowed in the predicate of a where is assign,
- i.e., 'var=expr'. This assign differs from a regular 'ncap2'
- assign. The LHS var must already exist in Input or Output. The
- RHS expression must evaluate to a scalar or a variable/attribute of
- the same size as the LHS variable.
- * Consider when both the LHS and RHS are variables: For every element
- where mask condition is True, the corresponding LHS variable
- element is re-assigned to its partner element on the RHS. In the
- elsewhere part the mask is logically inverted and the assign
- process proceeds as before.
- * If the mask dimensions are a subset of the LHS variable's
- dimensions, then it is made to conform; if it cannot be made to
- conform then script execution halts.
- * Missing values in the mask evaluate to False in the where
- code/block statement and to True in the elsewhere block/statement.
- LHS variable elements set to missing value are not re-assigned.
- For these reasons, do not explicitly reference missing values in
- the masking condition, e.g., 'where(foo=foo.get_missing()) foo=1;'
- will not work as expected.
-
- Example: Consider the variables 'float lon_2D_rct(lat,lon);' and
-'float var_msk(lat,lon);'. Suppose we wish to multiply by two the
-elements for which 'var_msk' equals 1:
- where(var_msk==1) lon_2D_rct=2*lon_2D_rct;
- Suppose that we have the variable 'int RDM(time)' and that we want to
-set its values less than 8 or greater than 80 to 0:
- where(RDM < 8 || RDM > 80) RDM=0;
-
- Consider irregularly gridded data, described using rank 2
-coordinates: 'double lat(south_north,east_west)', 'double
-lon(south_north,east_west)', 'double
-temperature(south_north,east_west)'. This type of structure is often
-found in regional weather/climate model (such as WRF) output, and in
-satellite swath data. For this reason we call it "Swath-like Data", or
-SLD. To find the average temperature in a region bounded by
-[LAT_MIN,LAT_MAX] and [LON_MIN,LON_MAX]:
- temperature_msk[$south_north,$east_west]=0.0;
- where((lat >= lat_min && lat <= lat_max) && (lon >= lon_min && lon <= lon_max))
- temperature_msk=temperature;
- elsewhere
- temperature_msk=temperature at _FillValue;
-
- temp_avg=temperature_msk.avg();
- temp_max=temperature.max();
-
- For North American Regional Reanalysis (NARR) data (example dataset
-(http://dust.ess.uci.edu/diwg/narr_uwnd.199605.nc)) the procedure looks
-like this
- ncap2 -O -v -S ~/narr.nco ${DATA}/hdf/narr_uwnd.199605.nc ~/foo.nc
- where 'narr.nco' is an 'ncap2' script like this:
- /* North American Regional Reanalysis (NARR) Statistics
- NARR stores grids with 2-D latitude and longitude, aka Swath-like Data (SLD)
- Here we work with three variables:
- lat(y,x), lon(y,x), and uwnd(time,level,y,x);
- To study sub-regions of SLD, we use masking techniques:
- 1. Define mask as zero times variable to be masked
- Then mask automatically inherits variable attributes
- And average below will inherit mask attributes
- 2. Optionally, create mask as RAM variable (as below with asterisk *)
- NCO does not write RAM variable to output
- Masks are often unwanted, and can be big, so this speeds execution
- 3. Example could be extended to preserve mean lat and lon of sub-region
- Follow uwnd example to do this: lat_msk=0.0*lat ... lat_avg=lat.avg($y,$x) */
- *uwnd_msk=0.0*uwnd;
- where((lat >= 35.6 && lat <= 37.0) && (lon >= -100.5 && lon <= -99.0))
- uwnd_msk=uwnd;
- elsewhere
- uwnd_msk=uwnd at _FillValue;
-
- // Average only over horizontal dimensions x and y (preserve level and time)
- uwnd_avg=uwnd_msk.avg($y,$x);
- Stripped of comments and formatting, this example is a
-three-statement script executed by a one-line command. NCO needs only
-this meagre input to unpack and copy the input data and attributes,
-compute the statistics, and then define and write the output file.
-Unless the comments pointed out that wind variable ('uwnd') was
-four-dimensional and the latitude/longitude grid variables were both
-two-dimensional, there would be no way to tell. This shows how NCO
-hides from the user the complexity of analyzing multi-dimensional SLD.
-We plan to extend such SLD features to more operators soon.
-
-4.1.14 Loops
-------------
-
-'ncap2' supplies 'for()' loops and 'while()' loops. They are completely
-unoptimized so use them only with RAM variables unless you want thrash
-your disk to death. To break out of a loop use the 'break' command. To
-iterate to the next cycle use the 'continue' command.
-
- // Set elements in variable double temp(time,lat)
- // If element < 0 set to 0, if element > 100 set to 100
- *sz_idx=$time.size;
- *sz_jdx=$lat.size;
-
- for(*idx=0;idx<sz_idx;idx++)
- for(*jdx=0;jdx<sz_jdx;jdx++)
- if(temp(idx,jdx) > 100) temp(idx,jdx)=100.0;
- else if(temp(idx,jdx) < 0) temp(idx,jdx)=0.0;
-
- // Are values of co-ordinate variable double lat(lat) monotonic?
- *sz=$lat.size;
-
- for(*idx=1;idx<sz;idx++)
- if(lat(idx)-lat(idx-1) < 0.0) break;
-
- if(idx == sz) print("lat co-ordinate is monotonic\n");
- else print("lat co-ordinate is NOT monotonic\n");
-
- // Sum odd elements
- *idx=0;
- *sz=$lat_nw.size;
- *sum=0.0;
-
- while(idx<sz){
- if(lat(idx)%2) sum+=lat(idx);
- idx++;
- }
-
- ram_write(sum);
- print("Total of odd elements ");print(sum);print("\n");
-
-4.1.15 Include files
---------------------
-
-The syntax of an INCLUDE-FILE is:
- #include "script.nco"
- The script filename is searched relative to the run directory. It is
-possible to nest include files to an arbitrary depth. A handy use of
-inlcude files is to store often used constants. Use RAM variables if
-you do not want these constants written to OUTPUT-FILE.
- // script.nco
- // Sample file to #include in ncap2 script
- *pi=3.1415926535; // RAM variable, not written to output
- *h=6.62607095e-34; // RAM variable, not written to output
- e=2.71828; // Regular (disk) variable, written to output
-
-4.1.16 'sort' methods
----------------------
-
-In ncap2 there are multiple ways to sort data. Beginning with NCO 4.1.0
-(March, 2012), ncap2 support six sorting functions:
- var_out=sort(var_in,&srt_map); // Ascending sort
- var_out=asort(var_in,&srt_map); // Accending sort
- var_out=dsort(var_in,&srt_map); // Desending sort
- var_out=remap(var_in,srt_map); // Apply srt_map to var_in
- var_out=unmap(var_in,srt_map); // Reverse what srt_map did to var_in
- dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts srt_map
- The first two functions, 'sort()' and 'asort()' sort, in ascending
-order, all the elements of VAR_IN (which can be a variable or attribute)
-without regard to any dimensions. The third function, 'dsort()' does
-the same but sorts in descending order. Remember that ascending and
-descending sorts are specified by 'asort()' and 'dsort()', respectively.
-
- These three functions are overloaded to take a second, optional
-argument called the sort map SRT_MAP, which should be supplied as a
-call-by-reference variable, i.e., preceded with an ampersand. If the
-sort map does not yet exist, then it will be created and returned as an
-integer type the same shape as the input variable.
-
- The output VAR_OUT of each sort function is a sorted version of the
-input, VAR_IN. The output VAR_OUT of the two mapping functions the
-result of applying (with 'remap()' or un-applying (with 'unmap()') the
-sort map SRT_MAP to the input VAR_IN. To apply the sort map with
-'remap()' the size of the variable must be exactly divisible by the size
-of the sort map.
-
- The final function 'invert_map()' returns the so-called de-sorting
-map DSR_MAP which is inverse map of the input map SRT_MAP. This gives
-the user access to both the forward and inverse sorting maps which can
-be useful in special situations.
- a1[$time]={10,2,3,4,6,5,7,3,4,1};
- a1_sort=sort(a1);
- print(a1_sort);
- // 1, 2, 3, 3, 4, 4, 5, 6, 7, 10;
-
- a2[$lon]={2,1,4,3};
- a2_sort=sort(a2,&a2_map);
- print(a2);
- // 1, 2, 3, 4
- print(a2_map);
- // 1, 0, 3, 2;
-
- If the map variable does not exist prior to the 'sort()' call, then
-it will be created with the same shape as the input variable and be of
-type 'NC_INT'. If the map variable already exists, then the only
-restriction is that it be of at least the same size as the input
-variable. To apply a map use 'remap(var_in,srt_map)'.
- defdim("nlat",5);
-
- a3[$lon]={2,5,3,7};
- a4[$nlat,$lon]={
- 1, 2, 3, 4,
- 5, 6, 7, 8,
- 9,10,11,12,
- 13,14,15,16,
- 17,18,19,20};
-
- a3_sort=sort(a3,&a3_map);
- print(a3_map);
- // 0, 2, 1, 3;
-
- a4_sort=remap(a4,a3_map);
- print(a4_sort);
- // 1, 3, 2, 4,
- // 5, 7, 6, 8,
- // 9,11,10,12,
- // 13,15,14,16,
- // 17,19,18,20;
-
- a3_map2[$nlat]={4,3,0,2,1};
-
- a4_sort2=remap(a4,a3_map2);
- print(a4_sort2);
- // 3, 5, 4, 2, 1
- // 8, 10, 9,7, 6,
- // 13,15,14,12,11,
- // 18,20,19,17,16
- As in the above example you may create your own sort map. To sort in
-descending order, apply the 'reverse()' method after the 'sort()'.
-
- Here is an extended example of how to use 'ncap2' features to
-hyperslab an irregular region based on the values of a variable not a
-coordinate. The distinction is crucial: hyperslabbing based on
-dimensional indices or coordinate values is straightforward. Using the
-values of single or multi-dimensional variable to define a hyperslab is
-quite different.
- cat > ~/ncap2_foo.nco << 'EOF'
- // Purpose: Save irregular 1-D regions based on variable values
-
- // Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
- /* NB: Single quotes around EOF above turn off shell parameter
- expansion in "here documents". This in turn prevents the
- need for protecting dollarsign characters in NCO scripts with
- backslashes when the script is cut-and-pasted (aka "moused")
- from an editor or e-mail into a shell console window */
-
- /* Copy coordinates and variable(s) of interest into RAM variable(s)
- Benefits:
- 1. ncap2 defines writes all variables on LHS of expression to disk
- Only exception is RAM variables, which are stored in RAM only
- Repeated operations on regular variables takes more time,
- because changes are written to disk copy after every change.
- RAM variables are only changed in RAM so script works faster
- RAM variables can be written to disk at end with ram_write()
- 2. Script permutes variables of interest during processing
- Safer to work with copies that have different names
- This discourages accidental, mistaken use of permuted versions
- 3. Makes this script a more generic template:
- var_in instead of specific variable names everywhere */
- *var_in=one_dmn_rec_var;
- *crd_in=time;
- *dmn_in_sz=$time.size; // [nbr] Size of input arrays
-
- /* Create all other "intermediate" variables as RAM variables
- to prevent them from cluttering the output file.
- Mask flag and sort map are same size as variable of interest */
- *msk_flg=var_in;
- *srt_map=var_in;
-
- /* In this example we mask for all values evenly divisible by 3
- This is the key, problem-specific portion of the template
- Replace this where() condition by that for your problem
- Mask variable is Boolean: 1=Meets condition, 0=Fails condition */
- where(var_in % 3 == 0) msk_flg=1; elsewhere msk_flg=0;
-
- // print("msk_flg = ");print(msk_flg); // For debugging...
-
- /* The sort() routine is overloaded, and takes one or two arguments
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input
- msk_flg is not needed in its original order after sort()
- Hence we use msk_flg as both input to and output from sort()
- Doing this prevents the need to define a new, unneeded variable */
- msk_flg=sort(msk_flg,&srt_map);
-
- // Count number of valid points in mask by summing the one's
- *msk_nbr=msk_flg.total();
-
- // Define output dimension equal in size to number of valid points
- defdim("crd_out",msk_nbr);
-
- /* Now sort the variable of interest using the sort map and remap()
- The output, on the LHS, is the input re-arranged so that all points
- meeting the mask condition are contiguous at the end of the array
- Use same srt_map to hyperslab multiple variables of the same shape
- Remember to apply srt_map to the coordinate variables */
- crd_in=remap(crd_in,srt_map);
- var_in=remap(var_in,srt_map);
-
- /* Hyperslab last msk_nbr values of variable(s) of interest */
- crd_out[crd_out]=crd_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
- var_out[crd_out]=var_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
-
- /* NB: Even though we created all variables possible as RAM variables,
- the original coordinate of interest, time, is written to the ouput.
- I'm not exactly sure why. For now, delete it from the output with:
- ncks -O -x -v time ~/foo.nc ~/foo.nc
- */
- EOF
- ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
- ncks -O -x -v time ~/foo.nc ~/foo.nc
- ncks ~/foo.nc
-
- Here is an extended example of how to use 'ncap2' features to sort
-multi-dimensional arrays based on the coordinate values along a single
-dimension.
- cat > ~/ncap2_foo.nco << 'EOF'
- /* Purpose: Sort multi-dimensional array based on coordinate values
- This example sorts the variable three_dmn_rec_var(time,lat,lon)
- based on the values of the time coordinate. */
-
- // Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
- // Randomize the time coordinate
- time=10.0*gsl_rng_uniform(time);
- //print("original randomized time =\n");print(time);
-
- /* The sort() routine is overloaded, and takes one or two arguments
- The first argument is a one dimensional array
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input */
-
- time=sort(time,&srt_map);
- //print("sorted time (ascending order) and associated sort map =\n");print(time);print(srt_map);
-
- /* sort() always sorts in ascending order
- The associated sort map therefore re-arranges the original,
- randomized time array into ascending order.
- There are two methods to obtain the descending order the user wants
- 1) We could solve the problem in ascending order (the default)
- and then apply the reverse() method to re-arrange the results.
- 2) We could change the sort map to return things in descending
- order of time and solve the problem directly in descending order. */
-
- // Following shows how to do method one:
-
- /* Expand the sort map to srt_map_3d, the size of the data array
- 1. Use data array to provide right shape for the expanded sort map
- 2. Coerce data array into an integer so srt_map_3d is an integer
- 3. Multiply data array by zero so 3-d map elements are all zero
- 4. Add the 1-d sort map to the 3-d sort map (NCO automatically resizes)
- 5. Add the spatial (lat,lon) offsets to each time index
- 6. de-sort using the srt_map_3d
- 7. Use reverse to obtain descending in time order
- Loops could accomplish the same thing (exercise left for reader)
- However, loops are slow for large datasets */
-
- /* Following index manipulation requires understanding correspondence
- between 1-d (unrolled, memory order of storage) and access into that
- memory as a multidimensional (3-d, in this case) rectangular array.
- Key idea to understand is how dimensionality affects offsets */
- // Copy 1-d sort map into 3-d sort map
- srt_map_3d=(0*int(three_dmn_rec_var))+srt_map;
- // Multiply base offset by factorial of lesser dimensions
- srt_map_3d*=$lat.size*$lon.size;
- lon_idx=array(0,1,$lon);
- lat_idx=array(0,1,$lat)*$lon.size;
- lat_lon_idx[$lat,$lon]=lat_idx+lon_idx;
- srt_map_3d+=lat_lon_idx;
-
- print("sort map 3d =\n");print(srt_map_3d);
-
- // Use remap() to re-map the data
- three_dmn_rec_var=remap(three_dmn_rec_var,srt_map_3d);
-
- // Finally, reverse data so time coordinate is descending
- time=time.reverse($time);
- //print("sorted time (descending order) =\n");print(time);
- three_dmn_rec_var=three_dmn_rec_var.reverse($time);
-
- // Method two: Key difference is srt_map=$time.size-srt_map-1;
- EOF
- ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
-
-4.1.17 Irregular Grids
-----------------------
-
-NCO is capable of analyzing datasets for many different underlying
-coordinate grid types. netCDF was developed for and initially used with
-grids comprised of orthogonal dimensions forming a rectangular
-coordinate system. We call such grids _standard_ grids. It is
-increasingly common for datasets to use metadata to describe much more
-complex grids. Let us first define three important coordinate grid
-properties: rectangularity, regularity, and fxm.
-
- Grids are _regular_ if the spacing between adjacent is constant. For
-example, a 4-by-5 degree latitude-longitude grid is regular because the
-spacings between adjacent latitudes (4 degrees) are constant as are the
-(5 degrees) spacings between adjacent longitudes. Spacing in
-_irregular_ grids depends on the location along the coordinate. Grids
-such as Gaussian grids have uneven spacing in latitude (points cluster
-near the equator) and so are irregular.
-
- Grids are _rectangular_ if the number of elements in any dimension is
-not a function of any other dimension. For example, a T42 Gaussian
-latitude-longitude grid is rectangular because there are the same number
-of longitudes (128) for each of the (64) latitudes. Grids are
-_non-rectangular_ if the elements in any dimension depend on another
-dimension. Non-rectangular grids present many special challenges to
-analysis software like NCO.
-
- Wrapped coordinates (*note Wrapped Coordinates::), such as longitude,
-are independent of these grid properties (regularity, rectangularity).
-
- The preferred NCO technique to analyze data on non-standard
-coordinate grids is to create a region mask with 'ncap2', and then to
-use the mask within 'ncap2' for variable-specific processing, and/or
-with other operators (e.g., 'ncwa', 'ncdiff') for entire file
-processing.
-
- Before describing the construction of masks, let us review how
-irregularly gridded geoscience data are described. Say that latitude
-and longitude are stored as R-dimensional arrays and the product of the
-dimension sizes is the total number of elements N in the other
-variables. Geoscience applications tend to use R=1, R=2, and R=3.
-
- If the grid is has no simple representation (e.g., discontinuous)
-then it makes sense to store all coordinates as 1D arrays with the same
-size as the number of grid points. These gridpoints can be completely
-independent of all the other (own weight, area, etc.).
-
- R=1: lat(number_of_gridpoints) and lon(number_of_gridpoints)
-
- If the horizontal grid is time-invariant then R=2 is common:
-
- R=2: lat(south_north,east_west) and lon(south_north,east_west)
-
- The Weather and Research Forecast (WRF) model uses R=3:
-
- R=3: lat(time,south_north,east_west), lon(time,south_north,east_west)
-
- and so supports grids that change with time.
-
- Grids with R > 1 often use missing values to indicated empty points.
-For example, so-called "staggered grids" will use fewer east_west points
-near the poles and more near the equator. netCDF only accepts
-rectangular arrays so space must be allocated for the maximum number of
-east_west points at all latitudes. Then the application writes missing
-values into the unused points near the poles.
-
- We demonstrate the 'ncap2' analysis technique for irregular regions
-by constructing a mask for an R=2 grid. We wish to find, say, the mean
-temperature within [LAT_MIN,LAT_MAX] and [LON_MIN,LON_MAX]:
- ncap2 -s 'mask_var= (lat >= lat_min && lat <= lat_max) && \
- (lon >= lon_min && lon <= lon_max);' in.nc out.nc
- Arbitrarily shaped regions can be defined by more complex conditional
-statements. Once defined, masks can be applied to specific variables,
-and to entire files:
- ncap2 -s 'temperature_avg=(temperature*mask_var).avg()' in.nc out.nc
- ncwa -a lat,lon -m mask_var -w area in.nc out.nc
- Crafting such commands on the command line is possible though
-unwieldy. In such cases, a script is often cleaner and allows you to
-document the procedure:
- cat > ncap2.in << 'EOF'
- mask_var = (lat >= lat_min && lat <= lat_max) && (lon >= lon_min && > lon <= lon_max);
- if(mask_var.total() > 0){ // Check that mask contains some valid values
- temperature_avg=(temperature*mask_var).avg(); // Average temperature
- temperature_max=(temperature*mask_var).max(); // Maximum temperature
- }
- EOF
- ncap2 -S ncap2.in in.nc out.nc
-
- Grids like those produced by the WRF model are complex because one
-must use global metadata to determine the grid staggering and offsets to
-translate 'XLAT' and 'XLONG' into real latitudes, longitudes, and
-missing points. The WRF grid documentation should describe this. For
-WRF files creating regional masks looks, in general, like
- mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);
-
- A few notes: Irregular regions are the union of arrays
-lat/lon_min/max's. The mask procedure is identical for all R.
-
-4.1.18 Bilinear interpolation
------------------------------
-
-As of version 4.0.0 NCO has internal routines to perform bilinear
-interpolation on gridded data sets. In mathematics, bilinear
-interpolation is an extension of linear interpolation for interpolating
-functions of two variables on a regular grid. The idea is to perform
-linear interpolation first in one direction, and then again in the other
-direction.
-
- Suppose we have an irregular grid of data 'temperature[lat,lon]',
-with co-ordinate vars 'lat[lat], lon[lon]'. We wish to find the
-temperature at an arbitary point [X,Y] within the grid. If we can
-locate lat_min,lat_max and lon_min,lon_max such that 'lat_min <= X <=
-lat_max' and 'lon_min <= Y <= lon_max' then we can interpolate in two
-dimensions the temperature at [X,Y].
-
- The general form of the 'ncap2' interpolation function is
- var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_in_x,grid_in_y)
- where
-'grid_in'
- Input function data. Usually a two dimensional variable. It must
- be of size 'grid_in_x.size()*grid_in_y.size()'
-'grid_out'
- This variable is the shape of 'var_out'. Usually a two dimensional
- variable. It must be of size 'grid_out_x.size()*grid_out_y.size()'
-'grid_out_x'
- X output values
-'grid_out_y'
- Y output values
-'grid_in_x'
- X input values values. Must be monotonic (increasing or
- decreasing).
-'grid_in_y'
- Y input values values. Must be monotonic (increasing or
- decreasing).
-Prior to calculations all arguments are converted to type 'NC_DOUBLE'.
-After calculations 'var_out' is converted to the input type of
-'grid_in'.
-
- Suppose the first part of an 'ncap2' script is
- defdim("X",4);
- defdim("Y",5);
-
- // Temperature
- T_in[$X,$Y]=
- {100, 200, 300, 400, 500,
- 101, 202, 303, 404, 505,
- 102, 204, 306, 408, 510,
- 103, 206, 309, 412, 515.0 };
-
- // Coordinate variables
- x_in[$X]={0.0,1.0,2.0,3.01};
- y_in[$Y]={1.0,2.0,3.0,4.0,5};
- Now we interpolate with the following variables:
- defdim("Xn",3);
- defdim("Yn",4);
- T_out[$Xn,$Yn]=0.0;
- x_out[$Xn]={0.0,0.02,3.01};
- y_out[$Yn]={1.1,2.0,3,4};
-
- var_out=bilinear_interp(T_in,T_out,x_out,y_out,x_in,y_in);
- print(var_out);
- // 110, 200, 300, 400,
- // 110.022, 200.04, 300.06, 400.08,
- // 113.3, 206, 309, 412 ;
-
- It is possible to interpolate a single point:
- var_out=bilinear_interp(T_in,0.0,3.0,4.99,x_in,y_in);
- print(var_out);
- // 513.920594059406
-
-*Wrapping and Extrapolation*
-The function 'bilinear_interp_wrap()' takes the same arguments as
-'bilinear_interp()' but performs wrapping (Y) and extrapolation (X) for
-points off the edge of the grid. If the given range of longitude is say
-(25-335) and we have a point at 20 degrees, then the endpoints of the
-range are used for the interpolation. This is what wrapping means. For
-wrapping to occur Y must be longitude and must be in the range (0,360)
-or (-180,180). There are no restrictions on the longitude (X) values,
-though typically these are in the range (-90,90). This 'ncap2' script
-illustrates both wrapping and extrapolation of end points:
- defdim("lat_in",6);
- defdim("lon_in",5);
-
- // Coordinate input vars
- lat_in[$lat_in]={-80,-40,0,30,60.0,85.0};
- lon_in[$lon_in]={30, 110, 190, 270, 350.0};
-
- T_in[$lat_in,$lon_in]=
- {10,40,50,30,15,
- 12,43,52,31,16,
- 14,46,54,32,17,
- 16,49,56,33,18,
- 18,52,58,34,19,
- 20,55,60,35,20.0 };
-
- defdim("lat_out",4);
- defdim("lon_out",3);
-
- // Coordinate variables
- lat_out[$lat_out]={-90,0,70,88.0};
- lon_out[$lon_out]={0,190,355.0};
-
- T_out[$lat_out,$lon_out]=0.0;
-
- T_out=bilinear_interp_wrap(T_in,T_out,lat_out,lon_out,lat_in,lon_in);
- print(T_out);
- // 13.4375, 49.5, 14.09375,
- // 16.25, 54, 16.625,
- // 19.25, 58.8, 19.325,
- // 20.15, 60.24, 20.135 ;
-
-4.1.19 GSL special functions
-----------------------------
-
-As of version 3.9.6 (released January, 2009), NCO can link to the GNU
-Scientific Library (GSL). 'ncap2' can access most GSL special functions
-including Airy, Bessel, error, gamma, beta, hypergeometric, and Legendre
-functions and elliptical integrals. GSL must be version 1.4 or later.
-To list the GSL functions available with your NCO build, use 'ncap2 -f |
-grep ^gsl'.
-
-The function names used by ncap2 mirror their GSL names. The NCO
-wrappers for GSL functions automatically call the error-handling version
-of the GSL function when available (1). This allows NCO to return a
-missing value when the GSL library encounters a domain error or a
-floating point exception. The slow-down due to calling the
-error-handling version of the GSL numerical functions was found to be
-negligible (please let us know if you find otherwise).
-
-Consider the gamma function.
-The GSL function prototype is
-'int gsl_sf_gamma_e(const double x, gsl_sf_result * result)' The 'ncap2'
-script would be:
- lon_in[lon]={-1,0.1,0,2,0.3};
- lon_out=gsl_sf_gamma(lon_in);
- lon_out= _, 9.5135, 4.5908, 2.9915
-
-The first value is set to '_FillValue' since the gamma function is
-undefined for negative integers. If the input variable has a missing
-value then this value is used. Otherwise, the default double fill value
-is used (defined in the netCDF header 'netcdf.h' as 'NC_FILL_DOUBLE =
-9.969e+36').
-
-Consider a call to a Bessel function with GSL prototype
-'int gsl_sf_bessel_Jn_e(int n, double x, gsl_sf_result * result)'
-
- An 'ncap2' script would be
- lon_out=gsl_sf_bessel_Jn(2,lon_in);
- lon_out=0.11490, 0.0012, 0.00498, 0.011165
- This computes the Bessel function of order N=2 for every value in
-'lon_in'. The Bessel order argument, an integer, can also be a
-non-scalar variable, i.e., an array.
- n_in[lon]={0,1,2,3};
- lon_out=gsl_sf_bessel_Jn(n_in,0.5);
- lon_out= 0.93846, 0.24226, 0.03060, 0.00256
-
-Arguments to GSL wrapper functions in 'ncap2' must conform to one
-another, i.e., they must share the same sub-set of dimensions. For
-example: 'three_out=gsl_sf_bessel_Jn(n_in,three_dmn_var_dbl)' is valid
-because the variable 'three_dmn_var_dbl' has a LON dimension, so 'n_in'
-in can be broadcast to conform to 'three_dmn_var_dbl'. However
-'time_out=gsl_sf_bessel_Jn(n_in,time)' is invalid.
-
- Consider the elliptical integral with prototype 'int
-gsl_sf_ellint_RD_e(double x, double y, double z, gsl_mode_t mode,
-gsl_sf_result * result)'
- three_out=gsl_sf_ellint_RD(0.5,time,three_dmn_var_dbl);
-
-The three arguments are all conformable so the above 'ncap2' call is
-valid. The mode argument in the function prototype controls the
-convergence of the algorithm. It also appears in the Airy Function
-prototypes. It can be set by defining the environment variable
-'GSL_PREC_MODE'. If unset it defaults to the value 'GSL_PREC_DOUBLE'.
-See the GSL manual for more details.
- export GSL_PREC_MODE=0 // GSL_PREC_DOUBLE
- export GSL_PREC_MODE=1 // GSL_PREC_SINGLE
- export GSL_PREC_MODE=2 // GSL_PREC_APPROX
-
-The 'ncap2' wrappers to the array functions are slightly different.
-Consider the following GSL prototype
-'int gsl_sf_bessel_Jn_array(int nmin, int nmax, double x, double
-*result_array)'
- b1=lon.double();
- x=0.5;
- status=gsl_sf_bessel_Jn_array(1,4,x,&b1);
- print(status);
- b1=0.24226,0.0306,0.00256,0.00016;
-This calculates the Bessel function of X=0.5 for N=1 to 4. The first
-three arguments are scalar values. If a non-scalar variable is supplied
-as an argument then only the first value is used. The final argument is
-the variable where the results are stored (NB: the '&' indicates this is
-a call by reference). This final argument must be of type 'double' and
-must be of least size NMAX-NMIN+1. If either of these conditions is not
-met then then the function returns an error message. The
-function/wrapper returns a status flag. Zero indicates success.
-
-Consider another array function
-'int gsl_sf_legendre_Pl_array( int lmax, double x, double
-*result_array);'
- a1=time.double();
- x=0.3;
- status=gsl_sf_legendre_Pl_array(a1.size()-1, x,&a1);
- print(status);
-This call calculates P_L(0.3) for L=0..9. Note that |X|<=1, otherwise
-there will be a domain error. See the GSL documentation for more
-details.
-
-The GSL functions implemented in NCO are listed in the table below.
-This table is correct for GSL version 1.10. To see what functions are
-available on your build run the command 'ncap2 -f |grep ^gsl' . To see
-this table along with the GSL C-function prototypes look at the
-spreadsheet *doc/nco_gsl.ods*.
-
-
-*GSL NAME* *I* *NCAP FUNCTION CALL*
-gsl_sf_airy_Ai_e Y gsl_sf_airy_Ai(dbl_expr)
-gsl_sf_airy_Bi_e Y gsl_sf_airy_Bi(dbl_expr)
-gsl_sf_airy_Ai_scaled_e Y gsl_sf_airy_Ai_scaled(dbl_expr)
-gsl_sf_airy_Bi_scaled_e Y gsl_sf_airy_Bi_scaled(dbl_expr)
-gsl_sf_airy_Ai_deriv_e Y gsl_sf_airy_Ai_deriv(dbl_expr)
-gsl_sf_airy_Bi_deriv_e Y gsl_sf_airy_Bi_deriv(dbl_expr)
-gsl_sf_airy_Ai_deriv_scaled_eY gsl_sf_airy_Ai_deriv_scaled(dbl_expr)
-gsl_sf_airy_Bi_deriv_scaled_eY gsl_sf_airy_Bi_deriv_scaled(dbl_expr)
-gsl_sf_airy_zero_Ai_e Y gsl_sf_airy_zero_Ai(uint_expr)
-gsl_sf_airy_zero_Bi_e Y gsl_sf_airy_zero_Bi(uint_expr)
-gsl_sf_airy_zero_Ai_deriv_eY gsl_sf_airy_zero_Ai_deriv(uint_expr)
-gsl_sf_airy_zero_Bi_deriv_eY gsl_sf_airy_zero_Bi_deriv(uint_expr)
-gsl_sf_bessel_J0_e Y gsl_sf_bessel_J0(dbl_expr)
-gsl_sf_bessel_J1_e Y gsl_sf_bessel_J1(dbl_expr)
-gsl_sf_bessel_Jn_e Y gsl_sf_bessel_Jn(int_expr,dbl_expr)
-gsl_sf_bessel_Jn_array Y status=gsl_sf_bessel_Jn_array(int,int,double,&var_out)
-gsl_sf_bessel_Y0_e Y gsl_sf_bessel_Y0(dbl_expr)
-gsl_sf_bessel_Y1_e Y gsl_sf_bessel_Y1(dbl_expr)
-gsl_sf_bessel_Yn_e Y gsl_sf_bessel_Yn(int_expr,dbl_expr)
-gsl_sf_bessel_Yn_array Y gsl_sf_bessel_Yn_array
-gsl_sf_bessel_I0_e Y gsl_sf_bessel_I0(dbl_expr)
-gsl_sf_bessel_I1_e Y gsl_sf_bessel_I1(dbl_expr)
-gsl_sf_bessel_In_e Y gsl_sf_bessel_In(int_expr,dbl_expr)
-gsl_sf_bessel_In_array Y status=gsl_sf_bessel_In_array(int,int,double,&var_out)
-gsl_sf_bessel_I0_scaled_e Y gsl_sf_bessel_I0_scaled(dbl_expr)
-gsl_sf_bessel_I1_scaled_e Y gsl_sf_bessel_I1_scaled(dbl_expr)
-gsl_sf_bessel_In_scaled_e Y gsl_sf_bessel_In_scaled(int_expr,dbl_expr)
-gsl_sf_bessel_In_scaled_arrayY staus=gsl_sf_bessel_In_scaled_array(int,int,double,&var_out)
-gsl_sf_bessel_K0_e Y gsl_sf_bessel_K0(dbl_expr)
-gsl_sf_bessel_K1_e Y gsl_sf_bessel_K1(dbl_expr)
-gsl_sf_bessel_Kn_e Y gsl_sf_bessel_Kn(int_expr,dbl_expr)
-gsl_sf_bessel_Kn_array Y status=gsl_sf_bessel_Kn_array(int,int,double,&var_out)
-gsl_sf_bessel_K0_scaled_e Y gsl_sf_bessel_K0_scaled(dbl_expr)
-gsl_sf_bessel_K1_scaled_e Y gsl_sf_bessel_K1_scaled(dbl_expr)
-gsl_sf_bessel_Kn_scaled_e Y gsl_sf_bessel_Kn_scaled(int_expr,dbl_expr)
-gsl_sf_bessel_Kn_scaled_arrayY status=gsl_sf_bessel_Kn_scaled_array(int,int,double,&var_out)
-gsl_sf_bessel_j0_e Y gsl_sf_bessel_J0(dbl_expr)
-gsl_sf_bessel_j1_e Y gsl_sf_bessel_J1(dbl_expr)
-gsl_sf_bessel_j2_e Y gsl_sf_bessel_j2(dbl_expr)
-gsl_sf_bessel_jl_e Y gsl_sf_bessel_jl(int_expr,dbl_expr)
-gsl_sf_bessel_jl_array Y status=gsl_sf_bessel_jl_array(int,double,&var_out)
-gsl_sf_bessel_jl_steed_arrayY gsl_sf_bessel_jl_steed_array
-gsl_sf_bessel_y0_e Y gsl_sf_bessel_Y0(dbl_expr)
-gsl_sf_bessel_y1_e Y gsl_sf_bessel_Y1(dbl_expr)
-gsl_sf_bessel_y2_e Y gsl_sf_bessel_y2(dbl_expr)
-gsl_sf_bessel_yl_e Y gsl_sf_bessel_yl(int_expr,dbl_expr)
-gsl_sf_bessel_yl_array Y status=gsl_sf_bessel_yl_array(int,double,&var_out)
-gsl_sf_bessel_i0_scaled_e Y gsl_sf_bessel_I0_scaled(dbl_expr)
-gsl_sf_bessel_i1_scaled_e Y gsl_sf_bessel_I1_scaled(dbl_expr)
-gsl_sf_bessel_i2_scaled_e Y gsl_sf_bessel_i2_scaled(dbl_expr)
-gsl_sf_bessel_il_scaled_e Y gsl_sf_bessel_il_scaled(int_expr,dbl_expr)
-gsl_sf_bessel_il_scaled_arrayY status=gsl_sf_bessel_il_scaled_array(int,double,&var_out)
-gsl_sf_bessel_k0_scaled_e Y gsl_sf_bessel_K0_scaled(dbl_expr)
-gsl_sf_bessel_k1_scaled_e Y gsl_sf_bessel_K1_scaled(dbl_expr)
-gsl_sf_bessel_k2_scaled_e Y gsl_sf_bessel_k2_scaled(dbl_expr)
-gsl_sf_bessel_kl_scaled_e Y gsl_sf_bessel_kl_scaled(int_expr,dbl_expr)
-gsl_sf_bessel_kl_scaled_arrayY status=gsl_sf_bessel_kl_scaled_array(int,double,&var_out)
-gsl_sf_bessel_Jnu_e Y gsl_sf_bessel_Jnu(dbl_expr,dbl_expr)
-gsl_sf_bessel_Ynu_e Y gsl_sf_bessel_Ynu(dbl_expr,dbl_expr)
-gsl_sf_bessel_sequence_Jnu_eN gsl_sf_bessel_sequence_Jnu
-gsl_sf_bessel_Inu_scaled_eY gsl_sf_bessel_Inu_scaled(dbl_expr,dbl_expr)
-gsl_sf_bessel_Inu_e Y gsl_sf_bessel_Inu(dbl_expr,dbl_expr)
-gsl_sf_bessel_Knu_scaled_eY gsl_sf_bessel_Knu_scaled(dbl_expr,dbl_expr)
-gsl_sf_bessel_Knu_e Y gsl_sf_bessel_Knu(dbl_expr,dbl_expr)
-gsl_sf_bessel_lnKnu_e Y gsl_sf_bessel_lnKnu(dbl_expr,dbl_expr)
-gsl_sf_bessel_zero_J0_e Y gsl_sf_bessel_zero_J0(uint_expr)
-gsl_sf_bessel_zero_J1_e Y gsl_sf_bessel_zero_J1(uint_expr)
-gsl_sf_bessel_zero_Jnu_e N gsl_sf_bessel_zero_Jnu
-gsl_sf_clausen_e Y gsl_sf_clausen(dbl_expr)
-gsl_sf_hydrogenicR_1_e N gsl_sf_hydrogenicR_1
-gsl_sf_hydrogenicR_e N gsl_sf_hydrogenicR
-gsl_sf_coulomb_wave_FG_e N gsl_sf_coulomb_wave_FG
-gsl_sf_coulomb_wave_F_arrayN gsl_sf_coulomb_wave_F_array
-gsl_sf_coulomb_wave_FG_arrayN gsl_sf_coulomb_wave_FG_array
-gsl_sf_coulomb_wave_FGp_arrayN gsl_sf_coulomb_wave_FGp_array
-gsl_sf_coulomb_wave_sphF_arrayNgsl_sf_coulomb_wave_sphF_array
-gsl_sf_coulomb_CL_e N gsl_sf_coulomb_CL
-gsl_sf_coulomb_CL_array N gsl_sf_coulomb_CL_array
-gsl_sf_coupling_3j_e N gsl_sf_coupling_3j
-gsl_sf_coupling_6j_e N gsl_sf_coupling_6j
-gsl_sf_coupling_RacahW_e N gsl_sf_coupling_RacahW
-gsl_sf_coupling_9j_e N gsl_sf_coupling_9j
-gsl_sf_coupling_6j_INCORRECT_eNgsl_sf_coupling_6j_INCORRECT
-gsl_sf_dawson_e Y gsl_sf_dawson(dbl_expr)
-gsl_sf_debye_1_e Y gsl_sf_debye_1(dbl_expr)
-gsl_sf_debye_2_e Y gsl_sf_debye_2(dbl_expr)
-gsl_sf_debye_3_e Y gsl_sf_debye_3(dbl_expr)
-gsl_sf_debye_4_e Y gsl_sf_debye_4(dbl_expr)
-gsl_sf_debye_5_e Y gsl_sf_debye_5(dbl_expr)
-gsl_sf_debye_6_e Y gsl_sf_debye_6(dbl_expr)
-gsl_sf_dilog_e N gsl_sf_dilog
-gsl_sf_complex_dilog_xy_e N gsl_sf_complex_dilog_xy_e
-gsl_sf_complex_dilog_e N gsl_sf_complex_dilog
-gsl_sf_complex_spence_xy_eN gsl_sf_complex_spence_xy_e
-gsl_sf_multiply_e N gsl_sf_multiply
-gsl_sf_multiply_err_e N gsl_sf_multiply_err
-gsl_sf_ellint_Kcomp_e Y gsl_sf_ellint_Kcomp(dbl_expr)
-gsl_sf_ellint_Ecomp_e Y gsl_sf_ellint_Ecomp(dbl_expr)
-gsl_sf_ellint_Pcomp_e Y gsl_sf_ellint_Pcomp(dbl_expr,dbl_expr)
-gsl_sf_ellint_Dcomp_e Y gsl_sf_ellint_Dcomp(dbl_expr)
-gsl_sf_ellint_F_e Y gsl_sf_ellint_F(dbl_expr,dbl_expr)
-gsl_sf_ellint_E_e Y gsl_sf_ellint_E(dbl_expr,dbl_expr)
-gsl_sf_ellint_P_e Y gsl_sf_ellint_P(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_ellint_D_e Y gsl_sf_ellint_D(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_ellint_RC_e Y gsl_sf_ellint_RC(dbl_expr,dbl_expr)
-gsl_sf_ellint_RD_e Y gsl_sf_ellint_RD(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_ellint_RF_e Y gsl_sf_ellint_RF(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_ellint_RJ_e Y gsl_sf_ellint_RJ(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_elljac_e N gsl_sf_elljac
-gsl_sf_erfc_e Y gsl_sf_erfc(dbl_expr)
-gsl_sf_log_erfc_e Y gsl_sf_log_erfc(dbl_expr)
-gsl_sf_erf_e Y gsl_sf_erf(dbl_expr)
-gsl_sf_erf_Z_e Y gsl_sf_erf_Z(dbl_expr)
-gsl_sf_erf_Q_e Y gsl_sf_erf_Q(dbl_expr)
-gsl_sf_hazard_e Y gsl_sf_hazard(dbl_expr)
-gsl_sf_exp_e Y gsl_sf_exp(dbl_expr)
-gsl_sf_exp_e10_e N gsl_sf_exp_e10
-gsl_sf_exp_mult_e Y gsl_sf_exp_mult(dbl_expr,dbl_expr)
-gsl_sf_exp_mult_e10_e N gsl_sf_exp_mult_e10
-gsl_sf_expm1_e Y gsl_sf_expm1(dbl_expr)
-gsl_sf_exprel_e Y gsl_sf_exprel(dbl_expr)
-gsl_sf_exprel_2_e Y gsl_sf_exprel_2(dbl_expr)
-gsl_sf_exprel_n_e Y gsl_sf_exprel_n(int_expr,dbl_expr)
-gsl_sf_exp_err_e Y gsl_sf_exp_err(dbl_expr,dbl_expr)
-gsl_sf_exp_err_e10_e N gsl_sf_exp_err_e10
-gsl_sf_exp_mult_err_e N gsl_sf_exp_mult_err
-gsl_sf_exp_mult_err_e10_e N gsl_sf_exp_mult_err_e10
-gsl_sf_expint_E1_e Y gsl_sf_expint_E1(dbl_expr)
-gsl_sf_expint_E2_e Y gsl_sf_expint_E2(dbl_expr)
-gsl_sf_expint_En_e Y gsl_sf_expint_En(int_expr,dbl_expr)
-gsl_sf_expint_E1_scaled_e Y gsl_sf_expint_E1_scaled(dbl_expr)
-gsl_sf_expint_E2_scaled_e Y gsl_sf_expint_E2_scaled(dbl_expr)
-gsl_sf_expint_En_scaled_e Y gsl_sf_expint_En_scaled(int_expr,dbl_expr)
-gsl_sf_expint_Ei_e Y gsl_sf_expint_Ei(dbl_expr)
-gsl_sf_expint_Ei_scaled_e Y gsl_sf_expint_Ei_scaled(dbl_expr)
-gsl_sf_Shi_e Y gsl_sf_Shi(dbl_expr)
-gsl_sf_Chi_e Y gsl_sf_Chi(dbl_expr)
-gsl_sf_expint_3_e Y gsl_sf_expint_3(dbl_expr)
-gsl_sf_Si_e Y gsl_sf_Si(dbl_expr)
-gsl_sf_Ci_e Y gsl_sf_Ci(dbl_expr)
-gsl_sf_atanint_e Y gsl_sf_atanint(dbl_expr)
-gsl_sf_fermi_dirac_m1_e Y gsl_sf_fermi_dirac_m1(dbl_expr)
-gsl_sf_fermi_dirac_0_e Y gsl_sf_fermi_dirac_0(dbl_expr)
-gsl_sf_fermi_dirac_1_e Y gsl_sf_fermi_dirac_1(dbl_expr)
-gsl_sf_fermi_dirac_2_e Y gsl_sf_fermi_dirac_2(dbl_expr)
-gsl_sf_fermi_dirac_int_e Y gsl_sf_fermi_dirac_int(int_expr,dbl_expr)
-gsl_sf_fermi_dirac_mhalf_eY gsl_sf_fermi_dirac_mhalf(dbl_expr)
-gsl_sf_fermi_dirac_half_e Y gsl_sf_fermi_dirac_half(dbl_expr)
-gsl_sf_fermi_dirac_3half_eY gsl_sf_fermi_dirac_3half(dbl_expr)
-gsl_sf_fermi_dirac_inc_0_eY gsl_sf_fermi_dirac_inc_0(dbl_expr,dbl_expr)
-gsl_sf_lngamma_e Y gsl_sf_lngamma(dbl_expr)
-gsl_sf_lngamma_sgn_e N gsl_sf_lngamma_sgn
-gsl_sf_gamma_e Y gsl_sf_gamma(dbl_expr)
-gsl_sf_gammastar_e Y gsl_sf_gammastar(dbl_expr)
-gsl_sf_gammainv_e Y gsl_sf_gammainv(dbl_expr)
-gsl_sf_lngamma_complex_e N gsl_sf_lngamma_complex
-gsl_sf_taylorcoeff_e Y gsl_sf_taylorcoeff(int_expr,dbl_expr)
-gsl_sf_fact_e Y gsl_sf_fact(uint_expr)
-gsl_sf_doublefact_e Y gsl_sf_doublefact(uint_expr)
-gsl_sf_lnfact_e Y gsl_sf_lnfact(uint_expr)
-gsl_sf_lndoublefact_e Y gsl_sf_lndoublefact(uint_expr)
-gsl_sf_lnchoose_e N gsl_sf_lnchoose
-gsl_sf_choose_e N gsl_sf_choose
-gsl_sf_lnpoch_e Y gsl_sf_lnpoch(dbl_expr,dbl_expr)
-gsl_sf_lnpoch_sgn_e N gsl_sf_lnpoch_sgn
-gsl_sf_poch_e Y gsl_sf_poch(dbl_expr,dbl_expr)
-gsl_sf_pochrel_e Y gsl_sf_pochrel(dbl_expr,dbl_expr)
-gsl_sf_gamma_inc_Q_e Y gsl_sf_gamma_inc_Q(dbl_expr,dbl_expr)
-gsl_sf_gamma_inc_P_e Y gsl_sf_gamma_inc_P(dbl_expr,dbl_expr)
-gsl_sf_gamma_inc_e Y gsl_sf_gamma_inc(dbl_expr,dbl_expr)
-gsl_sf_lnbeta_e Y gsl_sf_lnbeta(dbl_expr,dbl_expr)
-gsl_sf_lnbeta_sgn_e N gsl_sf_lnbeta_sgn
-gsl_sf_beta_e Y gsl_sf_beta(dbl_expr,dbl_expr)
-gsl_sf_beta_inc_e N gsl_sf_beta_inc
-gsl_sf_gegenpoly_1_e Y gsl_sf_gegenpoly_1(dbl_expr,dbl_expr)
-gsl_sf_gegenpoly_2_e Y gsl_sf_gegenpoly_2(dbl_expr,dbl_expr)
-gsl_sf_gegenpoly_3_e Y gsl_sf_gegenpoly_3(dbl_expr,dbl_expr)
-gsl_sf_gegenpoly_n_e N gsl_sf_gegenpoly_n
-gsl_sf_gegenpoly_array Y gsl_sf_gegenpoly_array
-gsl_sf_hyperg_0F1_e Y gsl_sf_hyperg_0F1(dbl_expr,dbl_expr)
-gsl_sf_hyperg_1F1_int_e Y gsl_sf_hyperg_1F1_int(int_expr,int_expr,dbl_expr)
-gsl_sf_hyperg_1F1_e Y gsl_sf_hyperg_1F1(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_U_int_e Y gsl_sf_hyperg_U_int(int_expr,int_expr,dbl_expr)
-gsl_sf_hyperg_U_int_e10_e N gsl_sf_hyperg_U_int_e10
-gsl_sf_hyperg_U_e Y gsl_sf_hyperg_U(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_U_e10_e N gsl_sf_hyperg_U_e10
-gsl_sf_hyperg_2F1_e Y gsl_sf_hyperg_2F1(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_2F1_conj_e Y gsl_sf_hyperg_2F1_conj(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_2F1_renorm_eY gsl_sf_hyperg_2F1_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_2F1_conj_renorm_eYgsl_sf_hyperg_2F1_conj_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_hyperg_2F0_e Y gsl_sf_hyperg_2F0(dbl_expr,dbl_expr,dbl_expr)
-gsl_sf_laguerre_1_e Y gsl_sf_laguerre_1(dbl_expr,dbl_expr)
-gsl_sf_laguerre_2_e Y gsl_sf_laguerre_2(dbl_expr,dbl_expr)
-gsl_sf_laguerre_3_e Y gsl_sf_laguerre_3(dbl_expr,dbl_expr)
-gsl_sf_laguerre_n_e Y gsl_sf_laguerre_n(int_expr,dbl_expr,dbl_expr)
-gsl_sf_lambert_W0_e Y gsl_sf_lambert_W0(dbl_expr)
-gsl_sf_lambert_Wm1_e Y gsl_sf_lambert_Wm1(dbl_expr)
-gsl_sf_legendre_Pl_e Y gsl_sf_legendre_Pl(int_expr,dbl_expr)
-gsl_sf_legendre_Pl_array Y status=gsl_sf_legendre_Pl_array(int,double,&var_out)
-gsl_sf_legendre_Pl_deriv_arrayNgsl_sf_legendre_Pl_deriv_array
-gsl_sf_legendre_P1_e Y gsl_sf_legendre_P1(dbl_expr)
-gsl_sf_legendre_P2_e Y gsl_sf_legendre_P2(dbl_expr)
-gsl_sf_legendre_P3_e Y gsl_sf_legendre_P3(dbl_expr)
-gsl_sf_legendre_Q0_e Y gsl_sf_legendre_Q0(dbl_expr)
-gsl_sf_legendre_Q1_e Y gsl_sf_legendre_Q1(dbl_expr)
-gsl_sf_legendre_Ql_e Y gsl_sf_legendre_Ql(int_expr,dbl_expr)
-gsl_sf_legendre_Plm_e Y gsl_sf_legendre_Plm(int_expr,int_expr,dbl_expr)
-gsl_sf_legendre_Plm_array Y status=gsl_sf_legendre_Plm_array(int,int,double,&var_out)
-gsl_sf_legendre_Plm_deriv_arrayNgsl_sf_legendre_Plm_deriv_array
-gsl_sf_legendre_sphPlm_e Y gsl_sf_legendre_sphPlm(int_expr,int_expr,dbl_expr)
-gsl_sf_legendre_sphPlm_arrayY status=gsl_sf_legendre_sphPlm_array(int,int,double,&var_out)
-gsl_sf_legendre_sphPlm_deriv_arrayNgsl_sf_legendre_sphPlm_deriv_array
-gsl_sf_legendre_array_sizeN gsl_sf_legendre_array_size
-gsl_sf_conicalP_half_e Y gsl_sf_conicalP_half(dbl_expr,dbl_expr)
-gsl_sf_conicalP_mhalf_e Y gsl_sf_conicalP_mhalf(dbl_expr,dbl_expr)
-gsl_sf_conicalP_0_e Y gsl_sf_conicalP_0(dbl_expr,dbl_expr)
-gsl_sf_conicalP_1_e Y gsl_sf_conicalP_1(dbl_expr,dbl_expr)
-gsl_sf_conicalP_sph_reg_e Y gsl_sf_conicalP_sph_reg(int_expr,dbl_expr,dbl_expr)
-gsl_sf_conicalP_cyl_reg_e Y gsl_sf_conicalP_cyl_reg(int_expr,dbl_expr,dbl_expr)
-gsl_sf_legendre_H3d_0_e Y gsl_sf_legendre_H3d_0(dbl_expr,dbl_expr)
-gsl_sf_legendre_H3d_1_e Y gsl_sf_legendre_H3d_1(dbl_expr,dbl_expr)
-gsl_sf_legendre_H3d_e Y gsl_sf_legendre_H3d(int_expr,dbl_expr,dbl_expr)
-gsl_sf_legendre_H3d_array N gsl_sf_legendre_H3d_array
-gsl_sf_legendre_array_sizeN gsl_sf_legendre_array_size
-gsl_sf_log_e Y gsl_sf_log(dbl_expr)
-gsl_sf_log_abs_e Y gsl_sf_log_abs(dbl_expr)
-gsl_sf_complex_log_e N gsl_sf_complex_log
-gsl_sf_log_1plusx_e Y gsl_sf_log_1plusx(dbl_expr)
-gsl_sf_log_1plusx_mx_e Y gsl_sf_log_1plusx_mx(dbl_expr)
-gsl_sf_mathieu_a_array N gsl_sf_mathieu_a_array
-gsl_sf_mathieu_b_array N gsl_sf_mathieu_b_array
-gsl_sf_mathieu_a N gsl_sf_mathieu_a
-gsl_sf_mathieu_b N gsl_sf_mathieu_b
-gsl_sf_mathieu_a_coeff N gsl_sf_mathieu_a_coeff
-gsl_sf_mathieu_b_coeff N gsl_sf_mathieu_b_coeff
-gsl_sf_mathieu_ce N gsl_sf_mathieu_ce
-gsl_sf_mathieu_se N gsl_sf_mathieu_se
-gsl_sf_mathieu_ce_array N gsl_sf_mathieu_ce_array
-gsl_sf_mathieu_se_array N gsl_sf_mathieu_se_array
-gsl_sf_mathieu_Mc N gsl_sf_mathieu_Mc
-gsl_sf_mathieu_Ms N gsl_sf_mathieu_Ms
-gsl_sf_mathieu_Mc_array N gsl_sf_mathieu_Mc_array
-gsl_sf_mathieu_Ms_array N gsl_sf_mathieu_Ms_array
-gsl_sf_pow_int_e N gsl_sf_pow_int
-gsl_sf_psi_int_e Y gsl_sf_psi_int(int_expr)
-gsl_sf_psi_e Y gsl_sf_psi(dbl_expr)
-gsl_sf_psi_1piy_e Y gsl_sf_psi_1piy(dbl_expr)
-gsl_sf_complex_psi_e N gsl_sf_complex_psi
-gsl_sf_psi_1_int_e Y gsl_sf_psi_1_int(int_expr)
-gsl_sf_psi_1_e Y gsl_sf_psi_1(dbl_expr)
-gsl_sf_psi_n_e Y gsl_sf_psi_n(int_expr,dbl_expr)
-gsl_sf_synchrotron_1_e Y gsl_sf_synchrotron_1(dbl_expr)
-gsl_sf_synchrotron_2_e Y gsl_sf_synchrotron_2(dbl_expr)
-gsl_sf_transport_2_e Y gsl_sf_transport_2(dbl_expr)
-gsl_sf_transport_3_e Y gsl_sf_transport_3(dbl_expr)
-gsl_sf_transport_4_e Y gsl_sf_transport_4(dbl_expr)
-gsl_sf_transport_5_e Y gsl_sf_transport_5(dbl_expr)
-gsl_sf_sin_e N gsl_sf_sin
-gsl_sf_cos_e N gsl_sf_cos
-gsl_sf_hypot_e N gsl_sf_hypot
-gsl_sf_complex_sin_e N gsl_sf_complex_sin
-gsl_sf_complex_cos_e N gsl_sf_complex_cos
-gsl_sf_complex_logsin_e N gsl_sf_complex_logsin
-gsl_sf_sinc_e N gsl_sf_sinc
-gsl_sf_lnsinh_e N gsl_sf_lnsinh
-gsl_sf_lncosh_e N gsl_sf_lncosh
-gsl_sf_polar_to_rect N gsl_sf_polar_to_rect
-gsl_sf_rect_to_polar N gsl_sf_rect_to_polar
-gsl_sf_sin_err_e N gsl_sf_sin_err
-gsl_sf_cos_err_e N gsl_sf_cos_err
-gsl_sf_angle_restrict_symm_eN gsl_sf_angle_restrict_symm
-gsl_sf_angle_restrict_pos_eN gsl_sf_angle_restrict_pos
-gsl_sf_angle_restrict_symm_err_eNgsl_sf_angle_restrict_symm_err
-gsl_sf_angle_restrict_pos_err_eNgsl_sf_angle_restrict_pos_err
-gsl_sf_zeta_int_e Y gsl_sf_zeta_int(int_expr)
-gsl_sf_zeta_e Y gsl_sf_zeta(dbl_expr)
-gsl_sf_zetam1_e Y gsl_sf_zetam1(dbl_expr)
-gsl_sf_zetam1_int_e Y gsl_sf_zetam1_int(int_expr)
-gsl_sf_hzeta_e Y gsl_sf_hzeta(dbl_expr,dbl_expr)
-gsl_sf_eta_int_e Y gsl_sf_eta_int(int_expr)
-gsl_sf_eta_e Y gsl_sf_eta(dbl_expr)
-
- ---------- Footnotes ----------
-
- (1) These are the GSL standard function names postfixed with '_e'.
-NCO calls these functions automatically, without the NCO command having
-to specifically indicate the '_e' function suffix.
-
-4.1.20 GSL interpolation
-------------------------
-
-As of version 3.9.9 (released July, 2009), NCO has wrappers to the GSL
-interpolation functions.
-
-Given a set of data points (x1,y1)...(xn, yn) the GSL functions computes
-a continuous interpolating function Y(x) such that Y(xi) = yi. The
-interpolation is piecewise smooth, and its behavior at the end-points is
-determined by the type of interpolation used. For more information
-consult the GSL manual.
-
-Interpolation with 'ncap2' is a two stage process. In the first stage,
-a RAM variable is created from the chosen interpolating function and the
-data set. This RAM variable holds in memory a GSL interpolation object.
-In the second stage, points along the interpolating function are
-calculated. If you have a very large data set or are interpolating many
-sets then consider deleting the RAM variable when it is redundant. Use
-the command 'ram_delete(var_nm)'.
-
-A simple example
-
- x_in[$lon]={1.0,2.0,3.0,4.0};
- y_in[$lon]={1.1,1.2,1.5,1.8};
-
- // Ram variable is declared and defined here
- gsl_interp_cspline(&ram_sp,x_in,y_in);
-
- x_out[$lon_grd]={1.1,2.0,3.0,3.1,3.99};
-
- y_out=gsl_spline_eval(ram_sp,x_out);
- y2=gsl_spline_eval(ram_sp,1.3);
- y3=gsl_spline_eval(ram_sp,0.0);
- ram_delete(ram_sp);
-
- print(y_out); // 1.10472, 1.2, 1.4, 1.42658, 1.69680002
- print(y2); // 1.12454
- print(y3); // '_'
-
-Note in the above example y3 is set to 'missing value' because 0.0 isn't
-within the input X range.
-
- *GSL Interpolation Types*
-All the interpolation functions have been implemented. These are:
-gsl_interp_linear()
-gsl_interp_polynomial()
-gsl_interp_cspline()
-gsl_interp_cspline_periodic()
-gsl_interp_akima()
-gsl_interp_akima_periodic()
-
-
-
- * Evaluation of Interpolating Types *
-*Implemented*
-gsl_spline_eval()
-*Unimplemented*
-gsl_spline_deriv()
-gsl_spline_deriv2()
-gsl_spline_integ()
-
-4.1.21 GSL least-squares fitting
---------------------------------
-
-Least Squares fitting is a method of calculating a straight line through
-a set of experimental data points in the XY plane. The data maybe
-weighted or unweighted. For more information please refer to the GSL
-manual.
-
-These GSL functions fall into three categories:
-*A)* Fitting data to Y=c0+c1*X
-*B)* Fitting data (through the origin) Y=c1*X
-*C)* Multi-parameter fitting (not yet implemented)
-
- *Section A*
-
-'status=*gsl_fit_linear*
-(data_x,stride_x,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&sumsq)
-'
-
-*Input variables*: data_x, stride_x, data_y, stride_y, n
-From the above variables an X and Y vector both of length 'n' are
-derived. If data_x or data_y is less than type double then it is
-converted to type 'double'. It is up to you to do bounds checking on
-the input data. For example if stride_x=3 and n=8 then the size of
-data_x must be at least 24
-
-*Output variables*: c0, c1, cov00, cov01, cov11,sumsq
-The '&' prefix indicates that these are call-by-reference variables. If
-any of the output variables don't exist prior to the call then they are
-created on the fly as scalar variables of type 'double'. If they
-already exist then their existing value is overwritten. If the function
-call is successful then 'status=0'.
-
- 'status=
-*gsl_fit_wlinear*(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&chisq)
-'
-
-Similar to the above call except it creates an additional weighting
-vector from the variables data_w, stride_w, n
-
- ' data_y_out=*gsl_fit_linear_est*(data_x,c0,c1,cov00,cov01,cov11) '
-
-This function calculates y values along the line Y=c0+c1*X
-
-
- *Section B*
-
-'status=*gsl_fit_mul*(data_x,stride_x,data_y,stride_y,n,&c1,&cov11,&sumsq)
-'
-
-*Input variables*: data_x, stride_x, data_y, stride_y, n
-From the above variables an X and Y vector both of length 'n' are
-derived. If data_x or data_y is less than type 'double' then it is
-converted to type 'double'.
-
-*Output variables*: c1,cov11,sumsq
-
- 'status=
-*gsl_fit_wmul*(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&c1,&cov11,&sumsq)
-'
-
-Similar to the above call except it creates an additional weighting
-vector from the variables data_w, stride_w, n
-
- ' data_y_out=*gsl_fit_mul_est*(data_x,c0,c1,cov11) '
-
-This function calculates y values along the line Y=c1*X
-
-
-The below example shows *gsl_fit_linear()* in action
-
- defdim("d1",10);
- xin[d1]={1,2,3,4,5,6,7,8,9,10.0};
- yin[d1]={3.1,6.2,9.1,12.2,15.1,18.2,21.3,24.0,27.0,30.0};
- gsl_fit_linear(xin,1,yin,1,$d1.size,&c0,&c1,&cov00,&cov01,&cov11,&sumsq);
- print(c0); // 0.2
- print(c1); // 2.98545454545
-
-
- defdim("e1",4);
- xout[e1]={1.0,3.0,4.0,11};
- yout[e1]=0.0;
-
- yout=gsl_fit_linear_est(xout, c0,c1, cov00,cov01, cov11, sumsq);
-
- print(yout); // 3.18545454545 ,9.15636363636, ,12.1418181818 ,33.04
-
-
-
-4.1.22 GSL statistics
----------------------
-
-Wrappers for most of the GSL Statistical functions have been
-implemented. The GSL function names include a type specifier (except
-for type double functions). To obtain the equivalent NCO name simply
-remove the type specifier; then depending on the data type the
-appropriate GSL function is called. The weighed statistical functions
-e.g., ' gsl_stats_wvariance()' are only defined in GSL for floating
-point types; so your data must of type 'float' or 'double' otherwise
-ncap2 will emit an error message. To view the implemented functions use
-the shell command 'ncap2 -f|grep _stats'
-
-GSL Functions
- short gsl_stats_max (short data[], size_t stride, size_t n);
- double gsl_stats_int_mean (int data[], size_t stride, size_t n);
- double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stride, size_t n, double mean);
- double gsl_stats_wmean (double w[], size_t wstride, double data[], size_t stride, size_t n);
- double gsl_stats_quantile_from_sorted_data (double sorted_data[], size_t stride, size_t n, double f) ;
-
-Equivalent ncap2 wrapper functions
- short gsl_stats_max (var_data, data_stride, n);
- double gsl_stats_mean (var_data, data_stride, n);
- double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_mean);
- double gsl_stats_wmean (var_weight, weight_stride, var_data, data_stride, n, var_mean);
- double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_stride, n, var_f) ;
-
-GSL has no notion of missing values or dimensionality beyond one. If
-your data has missing values which you want ignored in the calculations
-then use the 'ncap2' built in aggregate functions( *note Methods and
-functions:: ). The GSL functions operate on a vector of values created
-from the var_data/stride/n arguments. The ncap wrappers check that
-there is no bounding error with regard to the size of the data and the
-final value in the vector.
-
- Some examples
-
- a1[time]={1,2,3,4,5,6,7,8,9,10};
-
- a1_avg=gsl_stats_mean(a1,1,10);
- print(a1_avg); // 5.5
-
- a1_var=gsl_stats_variance(a1,4,3);
- print(a1_var); // 16.0
-
- // bounding error, vector attempts to access element a1(10)
- a1_sd=gsl_stats_sd(a1,5,3);
-
-For functions with the signature *func_nm(var_data,data_stride,n)*, one
-may omit the second or third arguments. The default value for STRIDE is
-'1'. The default value for N is '1+(data.size()-1)/stride'.
-
- // Following statements are equvalent
- n2=gsl_stats_max(a1,1,10)
- n2=gsl_stats_max(a1,1);
- n2=gsl_stats_max(a1);
-
- // Following statements are equvalent
- n3=gsl_stats_median_from_sorted_data(a1,2,5);
- n3=gsl_stats_median_from_sorted_data(a1,2);
-
- // Following statements are NOT equvalent
- n4=gsl_stats_kurtosis(a1,3,2);
- n4=gsl_stats_kurtosis(a1,3); //default n=4
-
- The following example illustrates some of the weighted functions.
-The data are randomly generated. In this case the value of the weight
-for each datum is either 0.0 or 1.0
- defdim("r1",2000);
- data[r1]=1.0;
-
- // Fill with random numbers [0.0,10.0)
- data=10.0*gsl_rng_uniform(data);
-
- // Create a weighting variable
- weight=(data>4.0);
-
- wmean=gsl_stats_wmean(weight,1,data,1,$r1.size);
- print(wmean);
-
- wsd=gsl_stats_wsd(weight,1,data,1,$r1.size);
- print(wsd);
-
- // number of values in data that are greater than 4
- weight_size=weight.total();
- print(weight_size);
-
- // print min/max of data
- dmin=data.gsl_stats_min();
- dmax=data.gsl_stats_max();
- print(dmin);print(dmax);
-
-4.1.23 GSL random number generation
------------------------------------
-
-The GSL library has a large number of random number generators. In
-addition there are a large set of functions for turning uniform random
-numbers into discrete or continuous probabilty distributions. The
-random number generator algorithms vary in terms of quality numbers
-output, speed of execution and maximum number output. For more
-information see the GSL documentation. The algorithm and seed are set
-via environment variables, these are picked up by the 'ncap2' code.
-
-*Setup*
-The number algorithm is set by the environment variable 'GSL_RNG_TYPE'.
-If this variable isn't set then the default rng algorithm is
-gsl_rng_19937. The seed is set with the environment variable
-'GSL_RNG_SEED'. The following wrapper functions in ncap2 provide
-information about the chosen algorithm.
-
-'gsl_rng_min()'
- the minimum value returned by the rng algorithm.
-'gsl_rng_max()'
- the maximum value returned by the rng algorithm.
-
-*Uniformly Distributed Random Numbers*
-'gsl_rng_get(var_in)'
- This function returns var_in with integers from the chosen rng
- algorithm. The min and max values depend uoon the chosen rng
- algorthm.
-'gsl_rng_uniform_int(var_in)'
- This function returns var_in with random integers from 0 to n-1.
- The value n must be less than or equal to the maximum value of the
- chosen rng algorithm.
-'gsl_rng_uniform(var_in)'
- This function returns var_in with double-precision numbers in the
- range [0.0,1). The range includes 0.0 and excludes 1.0.
-'gsl_rng_uniform_pos(var_in)'
- This function returns var_in with double-precision numbers in the
- range (0.0,1), excluding both 0.0 and 1.0.
-
-Below are examples of 'gsl_rng_get()' and 'gsl_rng_uniform_int()' in
-action.
-
- export GSL_RNG_TYPE=ranlux
- export GSL_RNG_SEED=10
- ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
- // 10 random numbers from the range 0 - 16777215
- // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 11163902, 7730127, 15531355, 10387694 ;
-
- ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.nc foo.nc
- // 10 random numbers from the range 0 - 20
- a2 = 1, 1, 6, 9, 11, 13, 13, 15, 16, 19 ;
-
-
-The following example produces an 'ncap2' runtime error. This is
-because the chose rng algorithm has a maximum value greater than '
-NC_MAX_INT=2147483647 '; the wrapper functions to 'gsl_rng_get()' and
-'gsl_rng_uniform_int()' return variable of type 'NC_INT'. Please be
-aware of this when using random number distribution functions functions
-from the GSL library which return 'unsigned int'. Examples of these are
-'gsl_ran_geometric()' and 'gsl_ran_pascal()'.
-
- export GSL_RNG_TYPE=mt19937
- ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
-
-To find the maximum value of the chosen rng algorithm use the following
-code snippet.
- ncap2 -v -O -s 'rng_max=gsl_rng_max();print(rng_max)' in.nc foo.nc
-
-*Random Number Distributions*
-The GSL library has a rich set of random number disribution functions.
-The library also provides cumulative distribution functions and inverse
-cumulative distribution functions sometimes referred to a quantile
-functions. To see whats available on your build use the shell command
-'ncap2 -f|grep -e _ran -e _cdf'.
-
-The following examples all return variables of type 'NC_INT'
- defdim("out",15);
- a1[$out]=0.5;
- a2=gsl_ran_binomial(a1,30).sort();
- //a2 = 10, 11, 12, 12, 13, 14, 14, 15, 15, 16, 16, 16, 16, 17, 22 ;
- a3=gsl_ran_geometric(a2).sort();
- //a2 = 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 3, 4, 5 ;
- a4=gsl_ran_pascal(a2,50);
- //a5 = 37, 40, 40, 42, 43, 45, 46, 49, 52, 58, 60, 62, 62, 65, 67 ;
-
-The following all return variables of type 'NC_DOUBLE';
- defdim("b1",1000);
- b1[$b1]=0.8;
- b2=gsl_ran_exponential(b1);
- b2_avg=b2.avg();
- print(b2_avg);
- // b2_avg = 0.756047976787
-
- b3=gsl_ran_gaussian(b1);
- b3_avg=b3.avg();
- b3_rms=b3.rms();
- print(b3_avg);
- // b3_avg = -0.00903446534258;
- print(b3_rms);
- // b3_rms = 0.81162979889;
-
- b4[$b1]=10.0;
- b5[$b1]=20.0;
- b6=gsl_ran_flat(b4,b5);
- b6_avg=b6.avg();
- print(b6_avg);
- // b6_avg=15.0588129413
-
-4.1.24 Examples ncap2
----------------------
-
-See the 'ncap.in' and 'ncap2.in' scripts released with NCO for more
-complete demonstrations of 'ncap2' functionality (script available
-on-line at <http://nco.sf.net/ncap2.in>).
-
- Define new attribute NEW for existing variable ONE as twice the
-existing attribute DOUBLE_ATT of variable ATT_VAR:
- ncap2 -s 'one at new=2*att_var at double_att' in.nc out.nc
-
- Average variables of mixed types (result is of type 'double'):
- ncap2 -s 'average=(var_float+var_double+var_int)/3' in.nc out.nc
-
- Multiple commands may be given to 'ncap2' in three ways. First, the
-commands may be placed in a script which is executed, e.g., 'tst.nco'.
-Second, the commands may be individually specified with multiple '-s'
-arguments to the same 'ncap2' invocation. Third, the commands may be
-chained into a single '-s' argument to 'ncap2'. Assuming the file
-'tst.nco' contains the commands 'a=3;b=4;c=sqrt(a^2+b^2);', then the
-following 'ncap2' invocations produce identical results:
- ncap2 -v -S tst.nco in.nc out.nc
- ncap2 -v -s 'a=3' -s 'b=4' -s 'c=sqrt(a^2+b^2)' in.nc out.nc
- ncap2 -v -s 'a=3;b=4;c=sqrt(a^2+b^2)' in.nc out.nc
- The second and third examples show that 'ncap2' does not require that
-a trailing semi-colon ';' be placed at the end of a '-s' argument,
-although a trailing semi-colon ';' is always allowed. However,
-semi-colons are required to separate individual assignment statements
-chained together as a single '-s' argument.
-
- 'ncap2' may be used to "grow" dimensions, i.e., to increase dimension
-sizes without altering existing data. Say 'in.nc' has 'ORO(lat,lon)'
-and the user wishes a new file with 'new_ORO(new_lat,new_lon)' that
-contains zeros in the undefined portions of the new grid.
- defdim("new_lat",$lat.size+1); // Define new dimension sizes
- defdim("new_lon",$lon.size+1);
- new_ORO[$new_lat,$new_lon]=0.0f; // Initialize to zero
- new_ORO(0:$lat.size-1,0:$lon.size-1)=ORO; // Fill valid data
- The commands to define new coordinate variables 'new_lat' and
-'new_lon' in the output file follow a similar pattern. One would might
-store these commands in a script 'grow.nco' and then execute the script
-with
- ncap2 -v -S grow.nco in.nc out.nc
-
- Imagine you wish to create a binary flag based on the value of an
-array. The flag should have value 1.0 where the array exceeds 1.0, and value 0.0
-elsewhere. This example creates the binary flag 'ORO_flg' in 'out.nc'
-from the continuous array named 'ORO' in 'in.nc'.
- ncap2 -s 'ORO_flg=(ORO > 1.0)' in.nc out.nc
- Suppose your task is to change all values of 'ORO' which equal 2.0 to
-the new value 3.0:
- ncap2 -s 'ORO_msk=(ORO==2.0);ORO=ORO_msk*3.0+!ORO_msk*ORO' in.nc out.nc
- This creates and uses 'ORO_msk' to mask the subsequent arithmetic
-operation. Values of 'ORO' are only changed where 'ORO_msk' is true,
-i.e., where 'ORO' equals 2.0
-Using the 'where' statement the above code simplifies to :
- ncap2 -s 'where(ORO==2.0) ORO=3.0;' in.nc foo.nc
-
- This example uses 'ncap2' to compute the covariance of two variables.
-Let the variables U and V be the horizontal wind components. The
-"covariance" of U and V is defined as the time mean product of the
-deviations of U and V from their respective time means. Symbolically,
-the covariance [U'V'] = [UV]-[U][V] where [X] denotes the time-average
-of X and X' denotes the deviation from the time-mean. The covariance
-tells us how much of the correlation of two signals arises from the
-signal fluctuations versus the mean signals. Sometimes this is called
-the "eddy covariance". We will store the covariance in the variable
-'uprmvprm'.
- ncwa -O -a time -v u,v in.nc foo.nc # Compute time mean of u,v
- ncrename -O -v u,uavg -v v,vavg foo.nc # Rename to avoid conflict
- ncks -A -v uavg,vavg foo.nc in.nc # Place time means with originals
- ncap2 -O -s 'uprmvprm=u*v-uavg*vavg' in.nc in.nc # Covariance
- ncra -O -v uprmvprm in.nc foo.nc # Time-mean covariance
- The mathematically inclined will note that the same covariance would
-be obtained by replacing the step involving 'ncap2' with
- ncap2 -O -s 'uprmvprm=(u-uavg)*(v-vavg)' foo.nc foo.nc # Covariance
-
- As of NCO version 3.1.8 (December, 2006), 'ncap2' can compute
-averages, and thus covariances, by itself:
- ncap2 -s 'uavg=u.avg($time);vavg=v.avg($time);uprmvprm=u*v-uavg*vavg' \
- -s 'uprmvrpmavg=uprmvprm.avg($time)' in.nc foo.nc
- We have not seen a simpler method to script and execute powerful
-arithmetic than 'ncap2'.
-
- 'ncap2' utilizes many meta-characters (e.g., '$', '?', ';', '()',
-'[]') that can confuse the command-line shell if not quoted properly.
-The issues are the same as those which arise in utilizing extended
-regular expressions to subset variables (*note Subsetting Files::). The
-example above will fail with no quotes and with double quotes. This is
-because shell globbing tries to "interpolate" the value of '$time' from
-the shell environment unless it is quoted:
- ncap2 -s 'uavg=u.avg($time)' in.nc foo.nc # Correct (recommended)
- ncap2 -s uavg=u.avg('$time') in.nc foo.nc # Correct (and dangerous)
- ncap2 -s uavg=u.avg($time) in.nc foo.nc # Fails ($time = '')
- ncap2 -s "uavg=u.avg($time)" in.nc foo.nc # Fails ($time = '')
- Without the single quotes, the shell replaces '$time' with an empty
-string. The command 'ncap2' receives from the shell is 'uavg=u.avg()'.
-This causes 'ncap2' to average over all dimensions rather than just the
-TIME dimension, and unintended consequence.
-
- We recommend using single quotes to protect 'ncap2' command-line
-scripts from the shell, even when such protection is not strictly
-necessary. Expert users may violate this rule to exploit the ability to
-use shell variables in 'ncap2' command-line scripts (*note CCSM
-Example::). In such cases it may be necessary to use the shell
-backslash character '\' to protect the 'ncap2' meta-character.
-
- A dimension of size one is said to be _degenerate_. Whether a
-degenerate record dimension is desirable or not depends on the
-application. Often a degenerate TIME dimension is useful, e.g., for
-concatentating, but it may cause problems with arithmetic. Such is the
-case in the above example, where the first step employs 'ncwa' rather
-than 'ncra' for the time-averaging. Of course the numerical results are
-the same with both operators. The difference is that, unless '-b' is
-specified, 'ncwa' writes no TIME dimension to the output file, while
-'ncra' defaults to keeping TIME as a degenerate (size 1) dimension.
-Appending 'u' and 'v' to the output file would cause 'ncks' to try to
-expand the degenerate time axis of 'uavg' and 'vavg' to the size of the
-non-degenerate TIME dimension in the input file. Thus the append ('ncks
--A') command would be undefined (and should fail) in this case. Equally
-important is the '-C' argument (*note Subsetting Coordinate Variables::)
-to 'ncwa' to prevent any scalar TIME variable from being written to the
-output file. Knowing when to use 'ncwa -a time' rather than the default
-'ncra' for time-averaging takes, well, time.
-
-4.1.25 Intrinsic mathematical methods
--------------------------------------
-
-'ncap2' supports the standard mathematical functions supplied with most
-operating systems. Standard calculator notation is used for addition
-'+', subtraction '-', multiplication '*', division '/', exponentiation
-'^', and modulus '%'. The available elementary mathematical functions
-are:
-'abs(x)'
- "Absolute value" Absolute value of X. Example: abs(-1) = 1
-'acos(x)'
- "Arc-cosine" Arc-cosine of X where X is specified in radians.
- Example: acos(1.0) = 0.0
-'acosh(x)'
- "Hyperbolic arc-cosine" Hyperbolic arc-cosine of X where X is
- specified in radians. Example: acosh(1.0) = 0.0
-'asin(x)'
- "Arc-sine" Arc-sine of X where X is specified in radians. Example:
- asin(1.0) = 1.57079632679489661922
-'asinh(x)'
- "Hyperbolic arc-sine" Hyperbolic arc-sine of X where X is specified
- in radians. Example: asinh(1.0) = 0.88137358702
-'atan(x)'
- "Arc-tangent" Arc-tangent of X where X is specified in radians
- between -pi/2 and pi/2. Example: atan(1.0) =
- 0.78539816339744830961
-
-'atan2(y,x)'
- "Arc-tangent2" Arc-tangent of Y/X :Example atan2(1,3) = 0.321689857
-
-'atanh(x)'
- "Hyperbolic arc-tangent" Hyperbolic arc-tangent of X where X is
- specified in radians between -pi/2 and pi/2. Example:
- atanh(3.14159265358979323844) = 1.0
-'ceil(x)'
- "Ceil" Ceiling of X. Smallest integral value not less than
- argument. Example: ceil(0.1) = 1.0
-'cos(x)'
- "Cosine" Cosine of X where X is specified in radians. Example:
- cos(0.0) = 1.0
-'cosh(x)'
- "Hyperbolic cosine" Hyperbolic cosine of X where X is specified in
- radians. Example: cosh(0.0) = 1.0
-'erf(x)'
- "Error function" Error function of X where X is specified between
- -1 and 1. Example: erf(1.0) = 0.842701
-'erfc(x)'
- "Complementary error function" Complementary error function of X
- where X is specified between -1 and 1. Example: erfc(1.0) =
- 0.15729920705
-'exp(x)'
- "Exponential" Exponential of X, e^x. Example: exp(1.0) =
- 2.71828182845904523536
-'floor(x)'
- "Floor" Floor of X. Largest integral value not greater than
- argument. Example: floor(1.9) = 1
-'gamma(x)'
- "Gamma function" Gamma function of X, Gamma(x). The well-known and
- loved continuous factorial function. Example: gamma(0.5) =
- sqrt(pi)
-'gamma_inc_P(x)'
- "Incomplete Gamma function" Incomplete Gamma function of parameter
- A and variable X, gamma_inc_P(a,x). One of the four incomplete
- gamma functions. Example: gamma_inc_P(1,1) = 1-1/e
-'ln(x)'
- "Natural Logarithm" Natural logarithm of X, ln(x). Example:
- ln(2.71828182845904523536) = 1.0
-'log(x)'
- "Natural Logarithm" Exact synonym for 'ln(x)'.
-'log10(x)'
- "Base 10 Logarithm" Base 10 logarithm of X, log10(x). Example:
- log(10.0) = 1.0
-'nearbyint(x)'
- "Round inexactly" Nearest integer to X is returned in floating
- point format. No exceptions are raised for "inexact conversions".
- Example: nearbyint(0.1) = 0.0
-'pow(x,y)'
- "Power" Value of X is raised to the power of Y. Exceptions are
- raised for "domain errors". Due to type-limitations in the C language
- 'pow' function, integer arguments are promoted (*note Type
- Conversion::) to type 'NC_FLOAT' before evaluation. Example:
- pow(2,3) = 8
-'rint(x)'
- "Round exactly" Nearest integer to X is returned in floating point
- format. Exceptions are raised for "inexact conversions". Example:
- rint(0.1) = 0
-'round(x)'
- "Round" Nearest integer to X is returned in floating point format.
- Round halfway cases away from zero, regardless of current IEEE
- rounding direction. Example: round(0.5) = 1.0
-'sin(x)'
- "Sine" Sine of X where X is specified in radians. Example:
- sin(1.57079632679489661922) = 1.0
-'sinh(x)'
- "Hyperbolic sine" Hyperbolic sine of X where X is specified in
- radians. Example: sinh(1.0) = 1.1752
-'sqrt(x)'
- "Square Root" Square Root of X, sqrt(x). Example: sqrt(4.0) = 2.0
-'tan(x)'
- "Tangent" Tangent of X where X is specified in radians. Example:
- tan(0.78539816339744830961) = 1.0
-'tanh(x)'
- "Hyperbolic tangent" Hyperbolic tangent of X where X is specified
- in radians. Example: tanh(1.0) = 0.761594155956
-'trunc(x)'
- "Truncate" Nearest integer to X is returned in floating point
- format. Round halfway cases toward zero, regardless of current
- IEEE rounding direction. Example: trunc(0.5) = 0.0
-The complete list of mathematical functions supported is
-platform-specific. Functions mandated by ANSI C are _guaranteed_ to be
-present and are indicated with an asterisk (1). and are indicated with
-an asterisk. Use the '-f' (or 'fnc_tbl' or 'prn_fnc_tbl') switch to
-print a complete list of functions supported on your platform. (2)
-
- ---------- Footnotes ----------
-
- (1) ANSI C compilers are guaranteed to support double-precision
-versions of these functions. These functions normally operate on netCDF
-variables of type 'NC_DOUBLE' without having to perform intrinsic
-conversions. For example, ANSI compilers provide 'sin' for the sine of
-C-type 'double' variables. The ANSI standard does not require, but many
-compilers provide, an extended set of mathematical functions that apply
-to single ('float') and quadruple ('long double') precision variables.
-Using these functions (e.g., 'sinf' for 'float', 'sinl' for 'long
-double'), when available, is (presumably) more efficient than casting
-variables to type 'double', performing the operation, and then
-re-casting. NCO uses the faster intrinsic functions when they are
-available, and uses the casting method when they are not.
-
- (2) Linux supports more of these intrinsic functions than other OSs.
-
-4.1.26 Operator precedence and associativity
---------------------------------------------
-
-This page lists the 'ncap2' operators in order of precedence (highest to
-lowest). Their associativity indicates in what order operators of equal
-precedence in an expression are applied.
-
-Operator Description Associativity
----------------------------------------------------------------------------
-'++ --' Postfix Increment/Decrement Right to
- Left
-'()' Parentheses (function call)
-'.' Method call
-'++ --' Prefix Increment/Decrement Right to
- Left
-'+ -' Unary Plus/Minus
-'!' Logical Not
-'^' Power of Operator Right to
- Left
-'* / %' Multiply/Divide/Modulus Left To
- Right
-'+ -' Addition/Subtraction Left To
- Right
-'>> <<' Fortran style array clipping Left to
- Right
-'< <=' Less than/Less than or equal to Left to
- Right
-'> >=' Greater than/Greater than or equal to
-'== !=' Equal to/Not equal to Left to
- Right
-'&&' Logical AND Left to
- Right
-'||' Logical OR Left to
- Right
-'?:' Ternary Operator Right to
- Left
-'=' Assignment Right to
- Left
-'+= -=' Addition/subtraction assignment
-'*= /=' Multiplication/division assignment
-
-4.1.27 ID Quoting
------------------
-
-In this section when I refer to a name I mean a variable name, attribute
-name or a dimension name The allowed characters in a valid netCDF name
-vary from release to release. (See end section). If you want to use
-metacharacters in a name or use a method name as a variable name then
-the name has to be quoted wherever it occurs.
-
-The default NCO name is specified by the regular expressions:
-
- DGT: ('0'..'9');
- LPH: ( 'a'..'z' | 'A'..'Z' | '_' );
- name: (LPH)(LPH|DGT)+
-
-The first character of a valid name must be alphabetic or the
-underscore. Any subsequent characters must be alphanumeric or
-underscore. ( e.g., a1,_23, hell_is_666 )
-
-The valid characters in a quoted name are specified by the regular
-expressions:
- LPHDGT: ( 'a'..'z' | 'A'..'Z' | '_' | '0'..'9');
- name: (LPHDGT|'-'|'+'|'.'|'('|')'|':' )+ ;
-
-Quote a variable:
-'avg' , '10_+10','set_miss' '+-90field' , '-test'=10.0d
-
-Quote a attribute:
-'three at 10', 'set_mss at +10', '666 at hell', 't1 at +units'="kelvin"
-
-Quote a dimension:
-'$10', '$t1-', '$-odd', c1['$10','$t1-']=23.0d
-
-
- The following comments are from the netCDF library definitions and
-detail the naming conventions for each release. netcdf-3.5.1
-netcdf-3.6.0-p1
-netcdf-3.6.1
-netcdf-3.6.2
- /*
- * ( [a-zA-Z]|[0-9]|'_'|'-'|'+'|'.'|'|':'|'@'|'('|')' )+
- * Verify that name string is valid CDL syntax, i.e., all characters are
- * alphanumeric, '-', '_', '+', or '.'.
- * Also permit ':', '@', '(', or ')' in names for chemists currently making
- * use of these characters, but don't document until ncgen and ncdump can
- * also handle these characters in names.
- */
-
-netcdf-3.6.3
-netcdf-4.0 Final 2008/08/28
- /*
- * Verify that a name string is valid syntax. The allowed name
- * syntax (in RE form) is:
- *
- * ([a-zA-Z_]|{UTF8})([^\x00-\x1F\x7F/]|{UTF8})*
- *
- * where UTF8 represents a multibyte UTF-8 encoding. Also, no
- * trailing spaces are permitted in names. This definition
- * must be consistent with the one in ncgen.l. We do not allow '/'
- * because HDF5 does not permit slashes in names as slash is used as a
- * group separator. If UTF-8 is supported, then a multi-byte UTF-8
- * character can occur anywhere within an identifier. We later
- * normalize UTF-8 strings to NFC to facilitate matching and queries.
- */
-
-4.2 'ncatted' netCDF Attribute Editor
-=====================================
-
-SYNTAX
- ncatted [-a ATT_DSC] [-a ...] [-D DBG] [-h] [--hdr_pad NBR]
- [-l PATH] [-O] [-o OUTPUT-FILE] [-p PATH] [-R] [-r] [--ram_all]
- INPUT-FILE [[OUTPUT-FILE]]
-
-DESCRIPTION
-
- 'ncatted' edits attributes in a netCDF file. If you are editing
-attributes then you are spending too much time in the world of metadata,
-and 'ncatted' was written to get you back out as quickly and painlessly
-as possible. 'ncatted' can "append", "create", "delete", "modify", and
-"overwrite" attributes (all explained below). 'ncatted' allows each
-editing operation to be applied to every variable in a file. This saves
-time when changing attribute conventions throughout a file. 'ncatted'
-is for _writing_ attributes. To _read_ attribute values in plain text,
-use 'ncks -m -M', or define something like 'ncattget' as a shell command
-(*note Filters for 'ncks'::).
-
- Because repeated use of 'ncatted' can considerably increase the size
-of the 'history' global attribute (*note History Attribute::), the '-h'
-switch is provided to override automatically appending the command to
-the 'history' global attribute in the OUTPUT-FILE.
-
- According to the 'netCDF User Guide', altering metadata in netCDF
-files does not incur the penalty of recopying the entire file when the
-new metadata occupies less space than the old metadata. Thus 'ncatted'
-may run much faster (at least on netCDF3 files) if judicious use of
-header padding (*note Metadata Optimization::) was made when producing
-the INPUT-FILE. Similarly, using the '--hdr_pad' option with 'ncatted'
-helps ensure that future metadata changes to OUTPUT-FILE occur as
-swiftly as possible.
-
- When 'ncatted' is used to change the '_FillValue' attribute, it
-changes the associated missing data self-consistently. If the internal
-floating point representation of a missing value, e.g., 1.0e36, differs
-between two machines then netCDF files produced on those machines will
-have incompatible missing values. This allows 'ncatted' to change the
-missing values in files from different machines to a single value so
-that the files may then be concatenated, e.g., by 'ncrcat', without
-losing information. *Note Missing Values::, for more information.
-
- To master 'ncatted' one must understand the meaning of the structure
-that describes the attribute modification, ATT_DSC specified by the
-required option '-a' or '--attribute'. This option is repeatable and
-may be used multiple time in a single 'ncatted' invocation to increase
-the efficiency of altering multiple attributes. Each ATT_DSC contains
-five elements. This makes using 'ncatted' somewhat complicated, though
-powerful. The ATT_DSC fields are in the following order:
-
- ATT_DSC = ATT_NM, VAR_NM, MODE, ATT_TYPE, ATT_VAL
-
-ATT_NM
- Attribute name. Example: 'units'
-VAR_NM
- Variable name. Example: 'pressure', ''^H2O''. Regular expressions
- (*note Subsetting Files::) are accepted and will select any
- matching variable (_not_ attribute) names. The names 'global' and
- 'group' have special meaning.
-MODE
- Edit mode abbreviation. Example: 'a'. See below for complete
- listing of valid values of MODE.
-ATT_TYPE
- Attribute type abbreviation. Example: 'c'. See below for complete
- listing of valid values of ATT_TYPE.
-ATT_VAL
- Attribute value. Example: 'pascal'.
-There should be no empty space between these five consecutive arguments.
-The description of these arguments follows in their order of appearance.
-
- The value of ATT_NM is the name of the attribute to edit. This
-meaning of this should be clear to all 'ncatted' users. Recall, as
-mentioned above, that VAR_NM (but not ATT_NM) may be specified as a
-regular expression. If ATT_NM is omitted (i.e., left blank) and
-"Delete" mode is selected, then all attributes associated with the
-specified variable will be deleted.
-
- The value of VAR_NM is the name of the variable containing the
-attribute (named ATT_NM) that you want to edit. There are three very
-important and useful exceptions to this rule. The value of VAR_NM can
-also be used to direct 'ncatted' to edit global attributes, or to repeat
-the editing operation for every group or variable in a file. A value of
-VAR_NM of 'global' indicates that ATT_NM refers to a global (i.e.,
-root-level) attribute, rather than to a particular variable's attribute.
-This is the method 'ncatted' supports for editing global attributes. A value
-of VAR_NM of 'group' indicates that ATT_NM refers to all groups, rather
-than to a particular variable's or group's attribute. The operation
-will proceed to edit group metadata for every group. Finally, if VAR_NM
-is left blank, then 'ncatted' attempts to perform the editing operation
-on every variable in the file. This option may be convenient to use if
-you decide to change the conventions you use for describing the data.
-
- The value of MODE is a single character abbreviation ('a', 'c', 'd',
-'m', or 'o') standing for one of five editing modes:
-'a'
- "Append". Append value ATT_VAL to current VAR_NM attribute ATT_NM
- value ATT_VAL, if any. If VAR_NM does not have an attribute
- ATT_NM, there is no effect.
-'c'
- "Create". Create variable VAR_NM attribute ATT_NM with ATT_VAL if
- ATT_NM does not yet exist. If VAR_NM already has an attribute
- ATT_NM, there is no effect, so the existing attribute is preserved
- without change.
-'d'
- "Delete". Delete current VAR_NM attribute ATT_NM. If VAR_NM does
- not have an attribute ATT_NM, there is no effect. If ATT_NM is
- omitted (left blank), then all attributes associated with the
- specified variable are automatically deleted. When "Delete" mode
- is selected, the ATT_TYPE and ATT_VAL arguments are superfluous and
- may be left blank.
-'m'
- "Modify". Change value of current VAR_NM attribute ATT_NM to value
- ATT_VAL. If VAR_NM does not have an attribute ATT_NM, there is no
- effect.
-'o'
- "Overwrite". Write attribute ATT_NM with value ATT_VAL to variable
- VAR_NM, overwriting existing attribute ATT_NM, if any. This is the
- default mode.
-
- The value of ATT_TYPE is a single character abbreviation ('f', 'd',
-'l', 'i', 's', 'c', 'b', 'u') or a short string standing for one of the
-twelve primitive netCDF data types:
-'f'
- "Float". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_FLOAT'.
-'d'
- "Double". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_DOUBLE'.
-'i, l'
- "Integer" or "Long". Value(s) specified in ATT_VAL will be stored
- as netCDF intrinsic type 'NC_INT'.
-'s'
- "Short". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_SHORT'.
-'c'
- "Char". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_CHAR'.
-'b'
- "Byte". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_BYTE'.
-'ub'
- "Unsigned Byte". Value(s) specified in ATT_VAL will be stored as
- netCDF intrinsic type 'NC_UBYTE'.
-'us'
- "Unsigned Short". Value(s) specified in ATT_VAL will be stored as
- netCDF intrinsic type 'NC_USHORT'.
-'u, ui, ul'
- "Unsigned Int". Value(s) specified in ATT_VAL will be stored as
- netCDF intrinsic type 'NC_UINT'.
-'ll, int64'
- "Int64". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_INT64'.
-'ull, uint64'
- "Uint64". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_UINT64'.
-'sng, string'
- "String". Value(s) specified in ATT_VAL will be stored as netCDF
- intrinsic type 'NC_STRING'. Note that 'ncatted' handles type
- 'NC_STRING' attributes correctly beginning with version 4.3.3
- released in July, 2013. Earlier versions fail when asked to handle
- 'NC_STRING' attributes.
-In "Delete" mode the specification of ATT_TYPE is optional (and is
-ignored if supplied).
-
- The value of ATT_VAL is what you want to change attribute ATT_NM to
-contain. The specification of ATT_VAL is optional in "Delete" (and is
-ignored) mode. Attribute values for all types besides 'NC_CHAR' must
-have an attribute length of at least one. Thus ATT_VAL may be a single
-value or one-dimensional array of elements of type 'att_type'. If the
-ATT_VAL is not set or is set to empty space, and the ATT_TYPE is
-'NC_CHAR', e.g., '-a units,T,o,c,""' or '-a units,T,o,c,', then the
-corresponding attribute is set to have zero length. When specifying an
-array of values, it is safest to enclose ATT_VAL in single or double
-quotes, e.g., '-a levels,T,o,s,"1,2,3,4"' or '-a
-levels,T,o,s,'1,2,3,4''. The quotes are strictly unnecessary around
-ATT_VAL except when ATT_VAL contains characters which would confuse the
-calling shell, such as spaces, commas, and wildcard characters.
-
- NCO processing of 'NC_CHAR' attributes is a bit like Perl in that it
-attempts to do what you want by default (but this sometimes causes
-unexpected results if you want unusual data storage). If the ATT_TYPE
-is 'NC_CHAR' then the argument is interpreted as a string and it may
-contain C-language escape sequences, e.g., '\n', which NCO will
-interpret before writing anything to disk. NCO translates valid escape
-sequences and stores the appropriate ASCII code instead. Since two byte
-escape sequences, e.g., '\n', represent one-byte ASCII codes, e.g.,
-ASCII 10 (decimal), the stored string attribute is one byte shorter than
-the input string length for each embedded escape sequence. The most
-frequently used C-language escape sequences are '\n' (for linefeed) and
-'\t' (for horizontal tab). These sequences in particular allow
-convenient editing of formatted text attributes. The other valid ASCII
-codes are '\a', '\b', '\f', '\r', '\v', and '\\'. *Note ncks netCDF
-Kitchen Sink::, for more examples of string formatting (with the 'ncks'
-'-s' option) with special characters.
-
- Analogous to 'printf', other special characters are also allowed by
-'ncatted' if they are "protected" by a backslash. The characters '"',
-''', '?', and '\' may be input to the shell as '\"', '\'', '\?', and
-'\\'. NCO simply strips away the leading backslash from these
-characters before editing the attribute. No other characters require
-protection by a backslash. Backslashes which precede any other
-character (e.g., '3', 'm', '$', '|', '&', '@', '%', '{', and '}') will
-not be filtered and will be included in the attribute.
-
- Note that the NUL character '\0' which terminates C language strings
-is assumed and need not be explicitly specified. If '\0' is input, it
-is translated to the NUL character. However, this will make the
-subsequent portion of the string, if any, invisible to C standard
-library string functions. And that may cause unintended consequences.
-Because of these context-sensitive rules, one must use 'ncatted' with
-care in order to store data, rather than text strings, in an attribute
-of type 'NC_CHAR'.
-
- Note that 'ncatted' interprets character attributes (i.e., attributes
-of type 'NC_CHAR') as strings. EXAMPLES
-
- Append the string 'Data version 2.0.\n' to the global attribute
-'history':
- ncatted -a history,global,a,c,'Data version 2.0\n' in.nc
- Note the use of embedded C language 'printf()'-style escape
-sequences.
-
- Change the value of the 'long_name' attribute for variable 'T' from
-whatever it currently is to "temperature":
- ncatted -a long_name,T,o,c,temperature in.nc
-
- NCO arithmetic operators may not work as expected on IEEE NaN (short
-for Not-a-Number) and NaN-like numbers such as positive infinity and
-negative infinity (1). One way to work-around this problem is to change
-IEEE NaNs to normal missing values. As of NCO 4.1.0 (March, 2012),
-'ncatted' works with NaNs. First set the missing value (i.e., the value
-of the '_FillValue' attribute) for the variable(s) in question to the
-IEEE NaN value.
- ncatted -a _FillValue,,o,f,NaN in.nc
- Then change the missing value from the IEEE NaN value to a normal
-IEEE number, like 1.0e36 (or to whatever the original missing value
-was).
- ncatted -a _FillValue,,m,f,1.0e36 in.nc
-
- Delete all existing 'units' attributes:
- ncatted -a units,,d,, in.nc
-The value of VAR_NM was left blank in order to select all variables in
-the file. The values of ATT_TYPE and ATT_VAL were left blank because
-they are superfluous in "Delete" mode.
-
- Delete all attributes associated with the 'tpt' variable, and delete
-all global attributes
- ncatted -a ,tpt,d,, -a ,global,d,, in.nc
-The value of ATT_NM was left blank in order to select all attributes
-associated with the variable. To delete all global attributes, simply
-replace 'tpt' with 'global' in the above.
-
- Modify all existing 'units' attributes to 'meter second-1':
- ncatted -a units,,m,c,'meter second-1' in.nc
-
- Add a 'units' attribute of 'kilogram kilogram-1' to all variables
-whose first three characters are 'H2O':
- ncatted -a units,'^H2O',c,c,'kilogram kilogram-1' in.nc
-
- Overwrite the 'quanta' attribute of variable 'energy' to an array of
-four integers.
- ncatted -a quanta,energy,o,s,'010,101,111,121' in.nc
-
- As of NCO 3.9.6 (January, 2009), 'ncatted' accepts "extended regular
-expressions" as arguments for variable names, though not for attribute
-names. Create 'isotope' attributes for all variables containing 'H2O'
-in their names.
- ncatted -a isotope,'^H2O*',c,s,'18' in.nc
- See *note Subsetting Files:: for more details.
-
- As of NCO 4.3.8 (November, 2013), 'ncatted' accepts full and partial
-group paths in names of attributes, variables, dimensions, and groups.
- # Overwrite units attribute of specific 'lon' variable
- ncatted -O -a units,/g1/lon,o,c,'degrees_west' in_grp.nc
- # Overwrite units attribute of all 'lon' variables
- ncatted -O -a units,lon,o,c,'degrees_west' in_grp.nc
- # Delete units attribute of all 'lon' variables
- ncatted -O -a units,lon,d,, in_grp.nc
- # Overwrite units attribute with new type for specific 'lon' variable
- ncatted -O -a units,/g1/lon,o,sng,'degrees_west' in_grp.nc
- # Add new_att attribute to all variables
- ncatted -O -a new_att,,c,sng,'new variable attribute' in_grp.nc
- # Add new_grp_att group attribute to all groups
- ncatted -O -a new_grp_att,group,c,sng,'new group attribute' in_grp.nc
- # Add new_grp_att group attribute to single group
- ncatted -O -a g1_grp_att,g1,c,sng,'new group attribute' in_grp.nc
- # Add new_glb_att global attribute to root group
- ncatted -O -a new_glb_att,global,c,sng,'new global attribute' in_grp.nc
-
- Demonstrate input of C-language escape sequences (e.g., '\n') and
-other special characters (e.g., '\"')
- ncatted -h -a special,global,o,c,
- '\nDouble quote: \"\nTwo consecutive double quotes: \"\"\n
- Single quote: Beyond my shell abilities!\nBackslash: \\\n
- Two consecutive backslashes: \\\\\nQuestion mark: \?\n' in.nc
- Note that the entire attribute is protected from the shell by single
-quotes. These outer single quotes are necessary for interactive use,
-but may be omitted in batch scripts.
-
- ---------- Footnotes ----------
-
- (1) Arithmetic comparisons to NaN and NaN-like numbers always return
-False, contrary to the behavior of all other numbers. This is difficult
-to inuit, yet is the behavior defined for NaN by IEEE 754. Using NaN
-for the missing value in datasets is legal. We strongly discourage it.
-
-4.3 'ncbo' netCDF Binary Operator
-=================================
-
-SYNTAX
- ncbo [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [--no_tmp_fl]
- [-O] [-o FILE_3] [-p PATH] [-R] [-r] [--ram_all]
- [-t THR_NBR] [--unn] [-v VAR[,...]] [-X ...] [-x] [-y OP_TYP]
- FILE_1 FILE_2 [FILE_3]
-
-DESCRIPTION
-
- 'ncbo' performs binary operations on variables in FILE_1 and the
-corresponding variables (those with the same name) in FILE_2 and stores
-the results in FILE_3. The binary operation operates on the entire
-files (modulo any excluded variables). *Note Missing Values::, for
-treatment of missing values. One of the four standard arithmetic binary
-operations currently supported must be selected with the '-y OP_TYP'
-switch (or long options '--op_typ' or '--operation'). The valid binary
-operations for 'ncbo', their definitions, corresponding values of the
-OP_TYP key, and alternate invocations are:
-"Addition"
- Definition: FILE_3 = FILE_1 + FILE_2
- Alternate invocation: 'ncadd'
- OP_TYP key values: 'add', '+', 'addition'
- Examples: 'ncbo --op_typ=add 1.nc 2.nc 3.nc', 'ncadd 1.nc 2.nc
- 3.nc'
-"Subtraction"
- Definition: FILE_3 = FILE_1 - FILE_2
- Alternate invocations: 'ncdiff', 'ncsub', 'ncsubtract'
- OP_TYP key values: 'sbt', '-', 'dff', 'diff', 'sub', 'subtract',
- 'subtraction'
- Examples: 'ncbo --op_typ=- 1.nc 2.nc 3.nc', 'ncdiff 1.nc 2.nc 3.nc'
-"Multiplication"
- Definition: FILE_3 = FILE_1 * FILE_2
- Alternate invocations: 'ncmult', 'ncmultiply'
- OP_TYP key values: 'mlt', '*', 'mult', 'multiply', 'multiplication'
- Examples: 'ncbo --op_typ=mlt 1.nc 2.nc 3.nc', 'ncmult 1.nc 2.nc
- 3.nc'
-"Division"
- Definition: FILE_3 = FILE_1 / FILE_2
- Alternate invocation: 'ncdivide'
- OP_TYP key values: 'dvd', '/', 'divide', 'division'
- Examples: 'ncbo --op_typ=/ 1.nc 2.nc 3.nc', 'ncdivide 1.nc 2.nc
- 3.nc'
-Care should be taken when using the shortest form of key values, i.e.,
-'+', '-', '*', and '/'. Some of these single characters may have
-special meanings to the shell (1). Place these characters inside quotes
-to keep them from being interpreted (globbed) by the shell (2). For
-example, the following commands are equivalent
- ncbo --op_typ=* 1.nc 2.nc 3.nc # Dangerous (shell may try to glob)
- ncbo --op_typ='*' 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
- ncbo --op_typ="*" 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
- ncbo --op_typ=mlt 1.nc 2.nc 3.nc
- ncbo --op_typ=mult 1.nc 2.nc 3.nc
- ncbo --op_typ=multiply 1.nc 2.nc 3.nc
- ncbo --op_typ=multiplication 1.nc 2.nc 3.nc
- ncmult 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmult'
- ncmultiply 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmultiply'
- No particular argument or invocation form is preferred. Users are
-encouraged to use the forms which are most intuitive to them.
-
- Normally, 'ncbo' will fail unless an operation type is specified with
-'-y' (equivalent to '--op_typ'). You may create exceptions to this rule
-to suit your particular tastes, in conformance with your site's policy
-on "symbolic links" to executables (files of a different name point to
-the actual executable). For many years, 'ncdiff' was the main binary
-file operator. As a result, many users prefer to continue invoking
-'ncdiff' rather than memorizing a new command ('ncbo -y SBT') which
-behaves identically to the original 'ncdiff' command. However, from a
-software maintenance standpoint, maintaining a distinct executable for
-each binary operation (e.g., 'ncadd') is untenable, and a single
-executable, 'ncbo', is desirable. To maintain backward compatibility,
-therefore, NCO automatically creates a symbolic link from 'ncbo' to
-'ncdiff'. Thus 'ncdiff' is called an "alternate invocation" of 'ncbo'.
-'ncbo' supports many additional alternate invocations which must be
-manually activated. Should users or system adminitrators decide to
-activate them, the procedure is simple. For example, to use 'ncadd'
-instead of 'ncbo --op_typ=add', simply create a symbolic link from
-'ncbo' to 'ncadd' (3). The alternatate invocations supported for each
-operation type are listed above. Alternatively, users may always define
-'ncadd' as an "alias" to 'ncbo --op_typ=add' (4).
-
- It is important to maintain portability in NCO scripts. Therefore we
-recommend that site-specfic invocations (e.g., 'ncadd') be used only in
-interactive sessions from the command-line. For scripts, we recommend
-using the full invocation (e.g., 'ncbo --op_typ=add'). This ensures
-portability of scripts between users and sites.
-
- 'ncbo' operates (e.g., adds) variables in FILE_2 with the
-corresponding variables (those with the same name) in FILE_1 and stores
-the results in FILE_3. Variables in FILE_1 or FILE_2 are "broadcast" to
-conform to the corresponding variable in the other input file if
-necessary(5). Now 'ncbo' is completely symmetric with respect to FILE_1
-and FILE_2, i.e., FILE_1 - FILE_2 = - (FILE_2 - FILE_1.
-
- Broadcasting a variable means creating data in non-existing
-dimensions by copying data in existing dimensions. For example, a two
-dimensional variable in FILE_2 can be subtracted from a four, three, or
-two (not one or zero) dimensional variable (of the same name) in
-'file_1'. This functionality allows the user to compute anomalies from
-the mean. In the future, we will broadcast variables in FILE_1, if
-necessary to conform to their counterparts in FILE_2. Thus, presently,
-the number of dimensions, or "rank", of any processed variable in FILE_1
-must be greater than or equal to the rank of the same variable in
-FILE_2. Of course, the size of all dimensions common to both FILE_1 and
-FILE_2 must be equal.
-
- When computing anomalies from the mean it is often the case that
-FILE_2 was created by applying an averaging operator to a file with
-initially the same dimensions as FILE_1 (often FILE_1 itself). In these
-cases, creating FILE_2 with 'ncra' rather than 'ncwa' will cause the
-'ncbo' operation to fail. For concreteness say the record dimension in
-'file_1' is 'time'. If FILE_2 was created by averaging FILE_1 over the
-'time' dimension with the 'ncra' operator (rather than with the 'ncwa'
-operator), then FILE_2 will have a 'time' dimension of size 1 rather
-than having no 'time' dimension at all (6). In this case the input
-files to 'ncbo', FILE_1 and FILE_2, will have unequally sized 'time'
-dimensions which causes 'ncbo' to fail. To prevent this from occuring,
-use 'ncwa' to remove the 'time' dimension from FILE_2. See the example
-below.
-
- 'ncbo' never operates on coordinate variables or variables of type
-'NC_CHAR' or 'NC_STRING'. This ensures that coordinates like (e.g.,
-latitude and longitude) are physically meaningful in the output file,
-FILE_3. This behavior is hardcoded. 'ncbo' applies special rules to
-some CF-defined (and/or NCAR CCSM or NCAR CCM fields) such as 'ORO'.
-See *note CF Conventions:: for a complete description. Finally, we note
-that 'ncflint' (*note ncflint netCDF File Interpolator::) is designed
-for file interpolation. As such, it also performs file subtraction,
-addition, multiplication, albeit in a more convoluted way than 'ncbo'.
-
- Beginning with NCO version 4.3.1 (May, 2013), 'ncbo' supports "group
-broadcasting". Group broadcasting means processing data based on group
-patterns in the input file(s) and automatically transferring or
-transforming groups to the output file. Consider the case where FILE_1
-contains multiple groups each with the variable V1, while FILE_2
-contains V1 only in its top-level (i.e., root) group. Then 'ncbo' will
-replicate the group structure of FILE_1 in the output file, FILE_3.
-Each group in FILE_3 contains the output of the corresponding group in
-FILE_1 operating on the data in the single group in FILE_2. An example
-is provided below.
-
-EXAMPLES
-
- Say files '85_0112.nc' and '86_0112.nc' each contain 12 months of
-data. Compute the change in the monthly averages from 1985 to 1986:
- ncbo 86_0112.nc 85_0112.nc 86m85_0112.nc
- ncdiff 86_0112.nc 85_0112.nc 86m85_0112.nc
- ncbo --op_typ=sub 86_0112.nc 85_0112.nc 86m85_0112.nc
- ncbo --op_typ='-' 86_0112.nc 85_0112.nc 86m85_0112.nc
-These commands are all different ways of expressing the same thing.
-
- The following examples demonstrate the broadcasting feature of
-'ncbo'. Say we wish to compute the monthly anomalies of 'T' from the
-yearly average of 'T' for the year 1985. First we create the 1985
-average from the monthly data, which is stored with the record dimension
-'time'.
- ncra 85_0112.nc 85.nc
- ncwa -O -a time 85.nc 85.nc
-The second command, 'ncwa', gets rid of the 'time' dimension of size 1
-that 'ncra' left in '85.nc'. Now none of the variables in '85.nc' has a
-'time' dimension. A quicker way to accomplish this is to use 'ncwa'
-from the beginning:
- ncwa -a time 85_0112.nc 85.nc
-We are now ready to use 'ncbo' to compute the anomalies for 1985:
- ncdiff -v T 85_0112.nc 85.nc t_anm_85_0112.nc
-Each of the 12 records in 't_anm_85_0112.nc' now contains the monthly
-deviation of 'T' from the annual mean of 'T' for each gridpoint.
-
- Say we wish to compute the monthly gridpoint anomalies from the zonal
-annual mean. A "zonal mean" is a quantity that has been averaged over
-the longitudinal (or X) direction. First we use 'ncwa' to average over
-longitudinal direction 'lon', creating '85_x.nc', the zonal mean of
-'85.nc'. Then we use 'ncbo' to subtract the zonal annual means from the
-monthly gridpoint data:
- ncwa -a lon 85.nc 85_x.nc
- ncdiff 85_0112.nc 85_x.nc tx_anm_85_0112.nc
-This examples works assuming '85_0112.nc' has dimensions 'time' and
-'lon', and that '85_x.nc' has no 'time' or 'lon' dimension.
-
- Group broadcasting simplifies evaluation of multiple models against
-observations. Consider the input file 'cmip5.nc' which contains
-multiple top-level groups 'cesm', 'ecmwf', and 'giss', each of which
-contains the surface air temperature field 'tas'. We wish to compare
-these models to observations stored in 'obs.nc' which contains 'tas'
-only in its top-level (i.e., root) group. It is often the case that
-many models and/or model simulations exist, whereas only one
-observational dataset does. We evaluate the models and obtain the bias
-(difference) between models and observations by subtracting 'obs.nc'
-from 'cmip5.nc'. Then 'ncbo' "broadcasts" (i.e., replicates) the
-observational data to match the group structure of 'cmip5.nc',
-subtracts, and then stores the results in the output file, 'bias.nc'
-which has the same group structure as 'cmip5.nc'.
- % ncbo -O cmip5.nc obs.nc bias.nc
- % ncks -H -v tas -d time,3 bias.nc
- /cesm/tas
- time[3] tas[3]=-1
- /ecmwf/tas
- time[3] tas[3]=0
- /giss/tas
- time[3] tas[3]=1
-
- As a final example, say we have five years of monthly data (i.e.,
-60 months) stored in '8501_8912.nc' and we wish to create a file which
-contains the twelve month seasonal cycle of the average monthly anomaly
-from the five-year mean of this data. The following method is just one
-permutation of many which will accomplish the same result. First use
-'ncwa' to create the five-year mean:
- ncwa -a time 8501_8912.nc 8589.nc
-Next use 'ncbo' to create a file containing the difference of each
-month's data from the five-year mean:
- ncbo 8501_8912.nc 8589.nc t_anm_8501_8912.nc
-Now use 'ncks' to group together the five January anomalies in one file,
-and use 'ncra' to create the average anomaly for all five Januarys.
-These commands are embedded in a shell loop so they are repeated for all
-twelve months:
- for idx in {1..12}; do # Bash Shell (version 3.0+)
- idx=`printf "%02d" ${idx}` # Zero-pad to preserve order
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
- done
- for idx in 01 02 03 04 05 06 07 08 09 10 11 12; do # Bourne Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
- done
- foreach idx (01 02 03 04 05 06 07 08 09 10 11 12) # C Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
- end
-Note that 'ncra' understands the 'stride' argument so the two commands
-inside the loop may be combined into the single command
- ncra -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
-Finally, use 'ncrcat' to concatenate the 12 average monthly anomaly
-files into one twelve-record file which contains the entire seasonal
-cycle of the monthly anomalies:
- ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
-
- ---------- Footnotes ----------
-
- (1) A naked (i.e., unprotected or unquoted) '*' is a wildcard
-character. A naked '-' may confuse the command line parser. A naked
-'+' and '/' are relatively harmless.
-
- (2) The widely used shell Bash correctly interprets all these special
-characters even when they are not quoted. That is, Bash does not
-prevent NCO from correctly interpreting the intended arithmetic
-operation when the following arguments are given (without quotes) to
-'ncbo': '--op_typ=+', '--op_typ=-', '--op_typ=*', and '--op_typ=/'
-
- (3) The command to do this is 'ln -s -f ncbo ncadd'
-
- (4) The command to do this is 'alias ncadd='ncbo --op_typ=add''
-
- (5) Prior to NCO version 4.3.1 (May, 2013), 'ncbo' would only
-broadcast variables in FILE_2 to conform to FILE_1. Variables in FILE_1
-were _never_ broadcast to conform to the dimensions in FILE_2.
-
- (6) This is because 'ncra' collapses the record dimension to a size of 1
-(making it a "degenerate" dimension), but does not remove it, while,
-unless '-b' is given, 'ncwa' removes all averaged dimensions. In other
-words, by default 'ncra' changes variable size though not rank, while,
-'ncwa' changes both variable size and rank.
-
-4.4 'nces' netCDF Ensemble Statistics
-=====================================
-
-SYNTAX
- nces [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdf] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [-n LOOP] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sfx sfx]
- [-O] [-o OUTPUT-FILE] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
- [-t THR_NBR] [--unn] [-v VAR[,...]] [-X ...] [-x] [-y OP_TYP]
- [INPUT-FILES] [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'nces' performs gridpoint statistics on variables across an arbitrary
-number (an "ensemble") of INPUT-FILES and/or of input groups within each
-file. Each file (or group) receives an equal weight. 'nces' was
-formerly (until NCO version 4.3.9, released December, 2013) known as
-'ncea' (netCDF Ensemble Averager)(1). For example, 'nces' will average
-a set of files or groups, weighting each file or group evenly. This is
-distinct from 'ncra', which performs statistics only over the record
-dimension(s) (e.g., TIME), and weights each record in each record
-dimension evenly.
-
- The file or group is the logical unit of organization for the results
-of many scientific studies. Often one wishes to generate a file or
-group which is the statistical product (e.g., average) of many separate
-files or groups. This may be to reduce statistical noise by combining
-the results of a large number of experiments, or it may simply be a step
-in a procedure whose goal is to compute anomalies from a mean state. In
-any case, when one desires to generate a file whose statistical
-properties are equally influenced by all the inputs, then 'nces' is the
-operator to use.
-
- Variables in the OUTPUT-FILE are the same size as the variable
-hyperslab in each input file or group, and each input file or group must
-be the same size after hyperslabbing (2) 'nces' does allow files to
-differ in the record dimension size if the requested record hyperslab
-(*note Hyperslabs::) resolves to the same size for all files. 'nces'
-recomputes the record dimension hyperslab limits for each input file so
-that coordinate limits may be used to select equal length timeseries
-from unequal length files. This simplifies analysis of unequal length
-timeseries from simulation ensembles (e.g., the CMIP3 IPCC AR4 archive).
-
- 'nces' works in one of two modes, file ensembles or group ensembles.
-File ensembles are the default (equivalent to the old 'ncea') and may
-also be explicitly specified by the '--nsm_fl' or '--ensemble_file'
-switches. To perform statistics on ensembles of groups, a newer
-feature, use '--nsm_grp' or '--ensemble_group'. Members of a group
-ensemble are groups that share the same structure, parent group, and
-nesting level. Members must be "leaf groups", i.e., not contain any
-sub-groups. Their contents usually have different values because they
-are realizations of replicated experiments. In group ensemble mode
-'nces' computes the statistics across the ensemble, which may span
-multiple input files. Files may contain members of multiple, distinct
-ensembles. However, all ensembles must have at least one member in the
-first input file. Group ensembles behave as an unlimited dimension of
-datasets: they may contain an arbitrary and extensible number of
-realizations in each file, and may be composed from multiple files.
-
- Output statistics in group ensemble mode are stored in the parent
-group by default. If the ensemble members are '/cesm/cesm_01' and
-'/cesm/cesm_02', then the computed statistic will be in '/cesm' in the
-output file. The '--nsm_sfx' option instructs nces to instead store
-output in a new child group of the parent created by attaching the
-suffix to the parent group's name, e.g., '--nsm_sfx='_avg'' would store
-results in the output group '/cesm/cesm_avg':
- nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
- nces --nsm_grp --nsm_sfx='_avg' mdl1.nc mdl2.nc mdl3.nc out.nc
-
- *Note Statistics vs. Concatenation::, for a description of the
-distinctions between the statistics tools and concatenators. As a
-multi-file operator, 'nces' will read the list of INPUT-FILES from
-'stdin' if they are not specified as positional arguments on the command
-line (*note Large Numbers of Files::).
-
- Like 'ncra' and 'ncwa', 'nces' treats coordinate variables as a
-special case. Coordinate variables are assumed to be the same in all
-ensemble members, so 'nces' simply copies the coordinate variables that
-appear in ensemble members directly to the output file. This has the
-same effect as averaging the coordinate variable across the ensemble,
-yet does not incur the time- or precision- penalties of actually
-averaging them. 'ncra' and 'ncwa' allow coordinate variables to be
-processed only by the linear average operation, regardless of the
-arithmetic operation type performed on the non-coordinate variables
-(*note Operation Types::). Thus it can be said that the three operators
-('ncra', 'ncwa', and 'nces') all average coordinate variables (even
-though 'nces' simply copies them). All other requested arithmetic
-operations (e.g., maximization, square-root, RMS) are applied only to
-non-coordinate variables. In these cases the linear average of the
-coordinate variable will be returned.
-
-EXAMPLES
-
- Consider a model experiment which generated five realizations of one
-year of data, say 1985. Imagine that the experimenter slightly perturbs
-the initial conditions of the problem before generating each new
-solution. Assume each file contains all twelve months (a seasonal
-cycle) of data and we want to produce a single file containing the
-ensemble average (mean) seasonal cycle. Here the numeric filename
-suffix denotes the realization number (_not_ the month):
- nces 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
- nces 85_0[1-5].nc 85.nc
- nces -n 5,2,1 85_01.nc 85.nc
-These three commands produce identical answers. *Note Specifying Input
-Files::, for an explanation of the distinctions between these methods.
-The output file, '85.nc', is the same size as the inputs files. It
-contains 12 months of data (which might or might not be stored in the
-record dimension, depending on the input files), but each value in the
-output file is the average of the five values in the input files.
-
- In the previous example, the user could have obtained the ensemble
-average values in a particular spatio-temporal region by adding a
-hyperslab argument to the command, e.g.,
- nces -d time,0,2 -d lat,-23.5,23.5 85_??.nc 85.nc
-In this case the output file would contain only three slices of data in
-the TIME dimension. These three slices are the average of the first
-three slices from the input files. Additionally, only data inside the
-tropics is included.
-
- As of NCO version 4.3.9 (released December, 2013) 'nces' also works
-with groups (rather than files) as the fundamental unit of the ensemble.
-Consider two ensembles, '/ecmwf' and '/cesm' stored across three input
-files 'mdl1.nc', 'mdl2.nc', and 'mdl3.nc'. Ensemble members would be
-leaf groups with names like '/ecmwf/01', '/ecmwf/02' etc. and
-'/cesm/01', '/cesm/02', etc. These commands average both ensembles:
- nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
- nces --nsm_grp --nsm_sfx='_min' --op_typ=min -n 3,1,1 mdl1.nc out.nc
- nces --nsm_grp -g cesm -v tas -d time,0,3 -n 3,1,1 mdl1.nc out.nc
- The first command stores averages in the output groups '/cesm' and
-'/ecmwf', while the second stores minima in the output groups
-'/cesm/cesm_min' and '/ecmwf/ecmwf_min': The third command demonstrates
-that sub-setting and hyperslabbing work as expected. Note that each
-input file may contain different numbers of members of each ensemble, as
-long as all distinct ensembles contain at least one member in the first
-file.
-
- ---------- Footnotes ----------
-
- (1) The old ncea command was deprecated in NCO version 4.3.9,
-released December, 2013. NCO will attempt to maintain
-back-compatibility and work as expected with invocations of 'ncea' for
-as long as possible. Please replace 'ncea' by 'nces' in all future
-work.
-
- (2) As of NCO version 4.4.2 (released February, 2014) 'nces' allows
-hyperslabs in all dimensions so long as the hyperslabs resolve to the
-same size. The fixed (i.e., non-record) dimensions should be the same
-size in all ensemble members both before and after hyperslabbing,
-although the hypserslabs may (and usually do) change the size of the
-dimensions from the input to the output files. Prior to this, 'nces'
-was only guaranteed to work on hyperslabs in the record dimension that
-resolved to the same size.
-
-4.5 'ncecat' netCDF Ensemble Concatenator
-=========================================
-
-SYNTAX
- ncecat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [--gag] [-h] [--hdf] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [-M] [--md5_digest] [--mrd] [-n LOOP] [--no_tmp_fl]
- [-O] [-o OUTPUT-FILE] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all]
- [-t THR_NBR] [-u ULM_NM] [--unn] [-v VAR[,...]] [-X ...] [-x]
- [INPUT-FILES] [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncecat' aggregates an arbitrary number of input files into a single
-output file using using one of two methods. "Record AGgregation" (RAG),
-the traditional method employed on (flat) netCDF3 files and still the
-default method, stores INPUT-FILES as consecutive records in the
-OUTPUT-FILE. "Group AGgregation" (GAG) stores INPUT-FILES as top-level
-groups in the netCDF4 OUTPUT-FILE. Record Aggregation (RAG) makes
-numerous assumptions about the structure of input files whereas Group
-Aggregation (GAG) makes none. Both methods are described in detail
-below. Since 'ncecat' aggregates all the contents of the input files,
-it can easily produce large output files so it is often helpful to
-invoke subsetting simultaneously (*note Subsetting Files::).
-
- RAG makes each variable (except coordinate variables) in each input
-file into a single record of the same variable in the output file.
-Coordinate variables are not concatenated, they are instead simply
-copied from the first input file to the OUTPUT-FILE. All INPUT-FILES
-must contain all extracted variables (or else there would be "gaps" in
-the output file).
-
- A new record dimension is the glue which binds together the input
-file data. The new record dimension is defined in the root group of the
-output file so it is visible to all sub-groups. Its name is, by
-default, "record". This default name can be overridden with the '-u
-ULM_NM' short option (or the '--ulm_nm' or 'rcd_nm' long options).
-
- Each extracted variable must be constant in size and rank across all
-INPUT-FILES. The only exception is that 'ncecat' allows files to differ
-in the record dimension size if the requested record hyperslab (*note
-Hyperslabs::) resolves to the same size for all files. This allows
-easier gluing/averaging of unequal length timeseries from simulation
-ensembles (e.g., the CMIP rchive).
-
- Classic (i.e., all netCDF3 and 'NETCDF4_CLASSIC') output files can
-contain only one record dimension. 'ncecat' makes room for the new glue
-record dimension by changing the pre-existing record dimension, if any,
-in the input files into a fixed dimension in the output file. netCDF4
-output files may contain any number of record dimensions, so 'ncecat'
-need not and does not alter the record dimensions, if any, of the input
-files as it copies them to the output file.
-
- "Group AGgregation" (GAG) stores INPUT-FILES as top-level groups in
-the OUTPUT-FILE. No assumption is made about the size or shape or type
-of a given object (variable or dimension or group) in the input file.
-The entire contents of the extracted portion of each input file is
-placed in its own top-level group in OUTPUT-FILE, which is automatically
-made as a netCDF4-format file.
-
- GAG has two methods to specify group names for the OUTPUT-FILE. The
-'-G' option, or its long-option equivalent '--gpe', takes as argument a
-group path editing description GPE_DSC of where to place the results.
-Each input file needs a distinct output group name to avoid namespace
-conflicts in the OUTPUT-FILE. Hence 'ncecat' automatically creates
-unique output group names based on either the input filenames or the
-GPE_DSC arguments. When the user provides GPE_DSC (i.e., with '-G'),
-then the output groups are formed by enumerating sequential two-digit
-numeric suffixes starting with zero, and appending them to the specified
-group path (*note Group Path Editing::). When GPE_DSC is not provided
-(i.e., user requests GAG with '--gag' instead of '-G'), then 'ncecat'
-forms the output groups by stripping the input file name of any
-type-suffix (e.g., '.nc'), and all but the final component of the full
-filename.
- ncecat --gag 85.nc 86.nc 87.nc 8587.nc # Output groups 85, 86, 87
- ncecat -G 85_ a.nc b.nc c.nc 8589.nc # Output groups 85_00, 85_01, 85_02
- ncecat -G 85/ a.nc b.nc c.nc 8589.nc # Output groups 85/00, 85/01, 85/02
-
- With both RAG and GAG the OUTPUT-FILE size is the sum of the sizes of
-the extracted variables in the input files. *Note Statistics vs.
-Concatenation::, for a description of the distinctions between the
-various statistics tools and concatenators. As a multi-file operator,
-'ncecat' will read the list of INPUT-FILES from 'stdin' if they are not
-specified as positional arguments on the command line (*note Large
-Numbers of Files::).
-
- Suppress global metadata copying. By default NCO's multi-file
-operators copy the global metadata from the first input file into
-OUTPUT-FILE. This helps to preserve the provenance of the output data.
-However, the use of metadata is burgeoning and is not uncommon to
-encounter files with excessive amounts of extraneous metadata.
-Extracting small bits of data from such files leads to output files
-which are much larger than necessary due to the automatically copied
-metadata. 'ncecat' supports turning off the default copying of global
-metadata via the '-M' switch (or its long option equivalents,
-'--glb_mtd_spp' and '--global_metadata_suppress').
-
- Consider five realizations, '85a.nc', '85b.nc', ... '85e.nc' of 1985
-predictions from the same climate model. Then 'ncecat 85?.nc 85_ens.nc'
-glues together the individual realizations into the single file,
-'85_ens.nc'. If an input variable was dimensioned ['lat','lon'], it
-will by default have dimensions ['record','lat','lon'] in the output
-file. A restriction of 'ncecat' is that the hyperslabs of the processed
-variables must be the same from file to file. Normally this means all
-the input files are the same size, and contain data on different
-realizations of the same variables.
-
- Concatenating a variable packed with different scales across multiple
-datasets is beyond the capabilities of 'ncecat' (and 'ncrcat', the other
-concatenator (*note Concatenation::). 'ncecat' does not unpack data, it
-simply _copies_ the data from the INPUT-FILES, and the metadata from the
-_first_ INPUT-FILE, to the OUTPUT-FILE. This means that data compressed
-with a packing convention must use the identical packing parameters
-(e.g., 'scale_factor' and 'add_offset') for a given variable across
-_all_ input files. Otherwise the concatenated dataset will not unpack
-correctly. The workaround for cases where the packing parameters differ
-across INPUT-FILES requires three steps: First, unpack the data using
-'ncpdq'. Second, concatenate the unpacked data using 'ncecat', Third,
-re-pack the result with 'ncpdq'.
-
-EXAMPLES
-
- Consider a model experiment which generated five realizations of one
-year of data, say 1985. You can imagine that the experimenter slightly
-perturbs the initial conditions of the problem before generating each
-new solution. Assume each file contains all twelve months (a seasonal
-cycle) of data and we want to produce a single file containing all the
-seasonal cycles. Here the numeric filename suffix denotes the
-experiment number (_not_ the month):
- ncecat 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
- ncecat 85_0[1-5].nc 85.nc
- ncecat -n 5,2,1 85_01.nc 85.nc
-These three commands produce identical answers. *Note Specifying Input
-Files::, for an explanation of the distinctions between these methods.
-The output file, '85.nc', is five times the size as a single INPUT-FILE.
-It contains 60 months of data.
-
- One often prefers that the (new) record dimension have a more
-descriptive, context-based name than simply "record". This is easily
-accomplished with the '-u ULM_NM' switch:
- ncecat -u realization 85_0[1-5].nc 85.nc
-Users are more likely to understand the data processing history when
-such descriptive coordinates are used.
-
- Consider a file with an existing record dimension named 'time'. and
-suppose the user wishes to convert 'time' from a record dimension to a
-non-record dimension. This may be useful, for example, when the user
-has another use for the record variable. The simplest method is to use
-'ncks --fix_rec_dmn' but another possibility is to use 'ncecat' followed
-by 'ncwa':
- ncecat in.nc out.nc # Convert time to non-record dimension
- ncwa -a record in.nc out.nc # Remove new degenerate record dimension
-The second step removes the degenerate record dimension. See *note
-ncpdq netCDF Permute Dimensions Quickly:: and *note ncks netCDF Kitchen
-Sink:: for other methods of of changing variable dimensionality,
-including the record dimension.
-
-4.6 'ncflint' netCDF File Interpolator
-======================================
-
-SYNTAX
- ncflint [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]]
- [-F] [--fix_rec_crd] [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdr_pad NBR]
- [-i VAR,VAL3] [-L DFL_LVL] [-l PATH] [--no_tmp_fl]
- [-O] [-o FILE_3] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all]
- [-t THR_NBR] [--unn] [-v VAR[,...]] [-w WGT1[,WGT2]] [-X ...] [-x]
- FILE_1 FILE_2 [FILE_3]
-
-DESCRIPTION
-
- 'ncflint' creates an output file that is a linear combination of the
-input files. This linear combination is a weighted average, a
-normalized weighted average, or an interpolation of the input files.
-Coordinate variables are not acted upon in any case, they are simply
-copied from FILE_1.
-
- There are two conceptually distinct methods of using 'ncflint'. The
-first method is to specify the weight each input file contributes to the
-output file. In this method, the value VAL3 of a variable in the output
-file FILE_3 is determined from its values VAL1 and VAL2 in the two input
-files according to VAL3 = WGT1*VAL1 + WGT2*VAL2 . Here at least WGT1,
-and, optionally, WGT2, are specified on the command line with the '-w'
-(or '--weight' or '--wgt_var') switch. If only WGT1 is specified then
-WGT2 is automatically computed as WGT2 = 1 - WGT1. Note that weights
-larger than 1 are allowed. Thus it is possible to specify WGT1 = 2 and
-WGT2 = -3. One can use this functionality to multiply all the values in
-a given file by a constant.
-
- The second method of using 'ncflint' is to specify the interpolation
-option with '-i' (or with the '--ntp' or '--interpolate' long options).
-This is the inverse of the first method in the following sense: When the
-user specifies the weights directly, 'ncflint' has no work to do besides
-multiplying the input values by their respective weights and adding
-together the results to produce the output values. It makes sense to
-use this when the weights are known _a priori_.
-
- Another class of problems has the "arrival value" (i.e., VAL3) of a
-particular variable VAR known _a priori_. In this case, the implied
-weights can always be inferred by examining the values of VAR in the
-input files. This results in one equation in two unknowns, WGT1 and
-WGT2: VAL3 = WGT1*VAL1 + WGT2*VAL2 . Unique determination of the
-weights requires imposing the additional constraint of normalization on
-the weights: WGT1 + WGT2 = 1. Thus, to use the interpolation option,
-the user specifies VAR and VAL3 with the '-i' option. 'ncflint' then
-computes WGT1 and WGT2, and uses these weights on all variables to
-generate the output file. Although VAR may have any number of
-dimensions in the input files, it must represent a single, scalar value.
-Thus any dimensions associated with VAR must be "degenerate", i.e., of
-size one.
-
- If neither '-i' nor '-w' is specified on the command line, 'ncflint'
-defaults to weighting each input file equally in the output file. This
-is equivalent to specifying '-w 0.5' or '-w 0.5,0.5'. Attempting to
-specify both '-i' and '-w' methods in the same command is an error.
-
- 'ncflint' does not interpolate variables of type 'NC_CHAR' and
-'NC_STRING'. This behavior is hardcoded.
-
- By default 'ncflint' interpolates or multiplies record coordinate
-variables (e.g., time is often stored as a record coordinate) not other
-coordinate variables (e.g., latitude and longitude). This is because
-'ncflint' is often used to time-interpolate between existing files, but
-is rarely used to spatially interpolate. Sometimes however, users wish
-to multiply entire files by a constant that does not multiply any
-coordinate variables. The '--fix_rec_crd' switch was implemented for
-this purpose in NCO version 4.2.6 (March, 2013). It prevents 'ncflint'
-from multiplying or interpolating any coordinate variables, including
-record coordinate variables.
-
- Depending on your intuition, 'ncflint' may treat missing values
-unexpectedly. Consider a point where the value in one input file, say
-VAL1, equals the missing value MSS_VAL_1 and, at the same point, the
-corresponding value in the other input file VAL2 is not misssing (i.e.,
-does not equal MSS_VAL_2). There are three plausible answers, and this
-creates ambiguity.
-
- Option one is to set VAL3 = MSS_VAL_1. The rationale is that
-'ncflint' is, at heart, an interpolator and interpolation involving a
-missing value is intrinsically undefined. 'ncflint' currently
-implements this behavior since it is the most conservative and least
-likely to lead to misinterpretation.
-
- Option two is to output the weighted valid data point, i.e., VAL3 =
-WGT2*VAL2 . The rationale for this behavior is that interpolation is
-really a weighted average of known points, so 'ncflint' should weight
-the valid point.
-
- Option three is to return the _unweighted_ valid point, i.e., VAL3 =
-VAL2. This behavior would appeal to those who use 'ncflint' to estimate
-data using the closest available data. When a point is not bracketed by
-valid data on both sides, it is better to return the known datum than no
-datum at all.
-
- The current implementation uses the first approach, Option one. If
-you have strong opinions on this matter, let us know, since we are
-willing to implement the other approaches as options if there is enough
-interest.
-
-EXAMPLES
-
- Although it has other uses, the interpolation feature was designed to
-interpolate FILE_3 to a time between existing files. Consider input
-files '85.nc' and '87.nc' containing variables describing the state of a
-physical system at times 'time' = 85 and 'time' = 87. Assume each file
-contains its timestamp in the scalar variable 'time'. Then, to linearly
-interpolate to a file '86.nc' which describes the state of the system at
-time at 'time' = 86, we would use
- ncflint -i time,86 85.nc 87.nc 86.nc
-
- Say you have observational data covering January and April 1985 in
-two files named '85_01.nc' and '85_04.nc', respectively. Then you can
-estimate the values for February and March by interpolating the existing
-data as follows. Combine '85_01.nc' and '85_04.nc' in a 2:1 ratio to
-make '85_02.nc':
- ncflint -w 0.667 85_01.nc 85_04.nc 85_02.nc
- ncflint -w 0.667,0.333 85_01.nc 85_04.nc 85_02.nc
-
- Multiply '85.nc' by 3 and by -2 and add them together to make
-'tst.nc':
- ncflint -w 3,-2 85.nc 85.nc tst.nc
-This is an example of a null operation, so 'tst.nc' should be identical
-(within machine precision) to '85.nc'.
-
- Multiply all the variables except the coordinate variables in the
-file 'emissions.nc' by by 0.8:
- ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_emissions.nc
-The use of '--fix_rec_crd' ensures, e.g., that the 'time' coordinate, if
-any, is not scaled (i.e., multiplied).
-
- Add '85.nc' to '86.nc' to obtain '85p86.nc', then subtract '86.nc'
-from '85.nc' to obtain '85m86.nc'
- ncflint -w 1,1 85.nc 86.nc 85p86.nc
- ncflint -w 1,-1 85.nc 86.nc 85m86.nc
- ncdiff 85.nc 86.nc 85m86.nc
-Thus 'ncflint' can be used to mimic some 'ncbo' operations. However
-this is not a good idea in practice because 'ncflint' does not broadcast
-(*note ncbo netCDF Binary Operator::) conforming variables during
-arithmetic. Thus the final two commands would produce identical results
-except that 'ncflint' would fail if any variables needed to be
-broadcast.
-
- Rescale the dimensional units of the surface pressure 'prs_sfc' from
-Pascals to hectopascals (millibars)
- ncflint -C -v prs_sfc -w 0.01,0.0 in.nc in.nc out.nc
- ncatted -a units,prs_sfc,o,c,millibar out.nc
-
-4.7 'ncks' netCDF Kitchen Sink
-==============================
-
-SYNTAX
- ncks [-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b BINARY-FILE] [-C] [-c] [--cdl]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]] [-F] [--fix_rec_dmn DIM]
- [-G GPE_DSC] [-g GRP[,...]] [--grp_xtr_var_xcl] [-H] [-h] [--hdn] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [-M] [-m] [--mk_rec_dmn DIM] [--md5_digest]
- [--no_blank] [--no_tmp_fl] [-O] [-o OUTPUT-FILE] [-P] [-p PATH] [--ppc ...]
- [-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s FORMAT]
- [-u] [--unn] [-V] [-v VAR[,...]] [-X ...] [-x] [--xml]
- INPUT-FILE [[OUTPUT-FILE]]
-
-DESCRIPTION
-
- The nickname "kitchen sink" is a catch-all because 'ncks' combines
-most features of 'ncdump' and 'nccopy' with extra features to extract,
-hyperslab, multi-slab, sub-set, and translate into one versatile
-utility. 'ncks' extracts (a subset of the) data from INPUT-FILE and and
-writes (or pastes) it in netCDF format to OUTPUT-FILE, and optionally
-writes it in flat binary format to 'binary-file', and optionally prints
-it to screen.
-
- 'ncks' prints netCDF input data in ASCII, CDL, or NcML text formats
-'stdout', like (an extended version of) 'ncdump'. By default 'ncks'
-prints data in a tabular format intended to be easy to search for the
-data you want, one datum per screen line, with all dimension subscripts
-and coordinate values (if any) preceding the datum. Option '-s' (or
-long options '--sng_fmt' and '--string') permits the user to format data
-using C-style format strings, while option '--cdl' outputs CDL and
-option '--xml' outputs NcML. 'ncks' exposes many flexible controls over
-printed output, including CDL and NcML.
-
- Options '-5', '-a', '--cdl', '-F' , '-H', '--hdn', '-M', '-m', '-P',
-'-Q', '-q', '-s', '-u', '-V', and '--xml' (and their long option
-counterparts) control the formatted appearance of the data.
-
- 'ncks' extracts (and optionally creates a new netCDF file comprised
-of) only selected variables from the input file (similar to the old
-'ncextr' specification). Only variables and coordinates may be
-specifically included or excluded--all global attributes and any
-attribute associated with an extracted variable are copied to the screen
-and/or output netCDF file. Options '-c', '-C', '-v', and '-x' (and
-their long option synonyms) control which variables are extracted.
-
- 'ncks' extracts hyperslabs from the specified variables ('ncks'
-implements the original 'nccut' specification). Option '-d' controls
-the hyperslab specification. Input dimensions that are not associated
-with any output variable do not appear in the output netCDF. This
-feature removes superfluous dimensions from netCDF files.
-
- 'ncks' will append variables and attributes from the INPUT-FILE to
-OUTPUT-FILE if OUTPUT-FILE is a pre-existing netCDF file whose relevant
-dimensions conform to dimension sizes of INPUT-FILE. The append
-features of 'ncks' are intended to provide a rudimentary means of adding
-data from one netCDF file to another, conforming, netCDF file. If
-naming conflicts exist between the two files, data in OUTPUT-FILE is
-usually overwritten by the corresponding data from INPUT-FILE. Thus,
-when appending, the user should backup OUTPUT-FILE in case valuable data
-are inadvertantly overwritten.
-
- If OUTPUT-FILE exists, the user will be queried whether to
-"overwrite", "append", or "exit" the 'ncks' call completely. Choosing
-"overwrite" destroys the existing OUTPUT-FILE and create an entirely new
-one from the output of the 'ncks' call. Append has differing effects
-depending on the uniqueness of the variables and attributes output by
-'ncks': If a variable or attribute extracted from INPUT-FILE does not
-have a name conflict with the members of OUTPUT-FILE then it will be
-added to OUTPUT-FILE without overwriting any of the existing contents of
-OUTPUT-FILE. In this case the relevant dimensions must agree (conform)
-between the two files; new dimensions are created in OUTPUT-FILE as
-required. When a name conflict occurs, a global attribute from
-INPUT-FILE will overwrite the corresponding global attribute from
-OUTPUT-FILE. If the name conflict occurs for a non-record variable,
-then the dimensions and type of the variable (and of its coordinate
-dimensions, if any) must agree (conform) in both files. Then the
-variable values (and any coordinate dimension values) from INPUT-FILE
-will overwrite the corresponding variable values (and coordinate
-dimension values, if any) in OUTPUT-FILE (1).
-
- Since there can only be one record dimension in a file, the record
-dimension must have the same name (though not necessarily the same size)
-in both files if a record dimension variable is to be appended. If the
-record dimensions are of differing sizes, the record dimension of
-OUTPUT-FILE will become the greater of the two record dimension sizes,
-the record variable from INPUT-FILE will overwrite any counterpart in
-OUTPUT-FILE and fill values will be written to any gaps left in the rest
-of the record variables (I think). In all cases variable attributes in
-OUTPUT-FILE are superseded by attributes of the same name from
-INPUT-FILE, and left alone if there is no name conflict.
-
- Some users may wish to avoid interactive 'ncks' queries about whether
-to overwrite existing data. For example, batch scripts will fail if
-'ncks' does not receive responses to its queries. Options '-O' and '-A'
-are available to force overwriting existing files and variables,
-respectively.
-
-Options specific to 'ncks'
---------------------------
-
-The following summarizes features unique to 'ncks'. Features common to
-many operators are described in *note Shared features::.
-
-'-5'
- Print data to screen alphabetically by group, and alphabetically by
- variable within each group. This ordering here is used by default
- in CDL-mode printing, and may be selected for traditional mode
- printing with '-5' (The switch for invocation may change to
- something more descriptive in the future).
-
-'-a'
- Do not alphabetize extracted fields. By default, the specified
- output variables are extracted, printed, and written to disk in
- alphabetical order. This tends to make long output lists easier to
- search for particular variables. Specifying '-a' results in the
- variables being extracted, printed, and written to disk in the
- order in which they were saved in the input file. Thus '-a'
- retains the original ordering of the variables. Also '--abc' and
- '--alphabetize'.
-
-'-b 'file''
- Activate native machine binary output writing to binary file
- 'file'. Also '--fl_bnr' and '--binary-file'. Writing packed
- variables in binary format is not supported. Metadata is never
- output to the binary file. Examine the netCDF output file to see
- the variables in the binary file. Use the '-C' switch, if
- necessary, to avoid wanting unwanted coordinates to the binary
- file:
- % ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
- % ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
- 200
- % ls -l ~/bnr.dat
- % ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
- % ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
- 40
-
-'--fix_rec_dmn'
- Change record dimension DIM in the input file into a fixed
- dimension in the output file. Also '--no_rec_dmn'. Before NCO
- version 4.2.5 (January, 2013), the syntax for '--fix_rec_dmn' did
- not permit or require the specification of the dimension name DIM.
- This is because the feature only worked on netCDF3 files, which
- support only one record dimension, so specifying its name was not
- necessary. netCDF4 files allow an arbitrary number of record
- dimensions, so the user must specify which record dimension to fix.
- The decision was made that starting with NCO version 4.2.5
- (January, 2013), it is always required to specify the dimension
- name to fix regardless of the netCDF file type. This keeps the
- code simple, and is symmetric with the syntax for '--mk_rec_dmn',
- described next.
-
- As of NCO version 4.4.0 (January, 2014), the argument 'all' may be
- given to '--fix_rec_dmn' to convert _all_ record dimensions to
- fixed dimensions in the output file. Previously, '--fix_rec_dmn'
- only allowed one option, the name of a single record dimension to
- be fixed. Now it is simple to simultaneously fix all record
- dimensions. This is useful (and nearly mandatory) when flattening
- netCDF4 files that have multiple record dimensions per group into
- netCDF3 files (which are limited to at most one record dimension)
- (*note Group Path Editing::).
-
- As of NCO version 4.4.0 (January, 2014), the '--hdn' or '--hidden'
- options print hidden (aka special) attributes. This is equivalent
- to 'ncdump -s'. Hidden attributes include: '_Format',
- '_DeflateLevel', '_Shuffle', '_Storage', '_ChunkSizes',
- '_Endianness', '_Fletcher32', and '_NOFILL'. Previously 'ncks'
- ignored all these attributes in CDL/XML modes. Now it prints these
- attributes as appropriate. As of NCO version 4.4.6 (September,
- 2014), '--hdn' also prints the extended file format (i.e., the
- format of the file or server supplying the data) as
- '_SOURCE_FORMAT'. Users are referred to the Unidata netCDF
- Documentation (http://www.unidata.ucar.edu/software/netcdf/docs),
- or the man pages for 'ncgen' or 'ncdump', for detailed descriptions
- of the meanings of these attributes.
-
-'--cdl'
- As of NCO version 4.3.3 (July, 2013), 'ncks' can print extracted
- data and metadata to screen (i.e., 'stdout') as valid CDL (network
- Common data form Description Language). CDL is the human-readable
- "lingua franca" of netCDF ingested by 'ncgen' and excreted by
- 'ncdump'. Compare 'ncks' "traditional" with CDL printing:
- zender at roulee:~$ ncks -v one ~/nco/data/in.nc
- one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
- one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
- one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
- one = 1
-
- zender at roulee:~$ ncks --cdl -v one ~/nco/data/in.nc
- netcdf in {
-
- variables:
- float one ;
- one:long_name = "one" ;
-
- data:
- one = 1 ;
-
- } // group /
- 'ncgen' converts CDL-mode output into a netCDF file:
- ncks --cdl -v one ~/nco/data/in.nc > ~/in.cdl
- ncgen -k netCDF-4 -b -o ~/in.nc ~/in.cdl
- ncks -v one ~/in.nc
- The HDF version of 'ncgen', often named 'hncgen' or 'ncgen-hdf',
- converts netCDF3 CDL into an HDF file:
- /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local builds)
- /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)
- /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Debian packages?)
- hdp dumpsds ~/in.hdf # ncdump/h5dump-equivalent for HDF4
- Note that HDF4 does not support netCDF-style groups, so the above
- commands fail when the input file contains groups. Only netCDF4
- and HDF5 support groups. In our experience the HDF 'ncgen'
- command, by whatever name installed, is not robust and can fail on
- valid netCDF3 CDL.
-
-'--mk_rec_dmn DIM'
- Change existing dimension DIM to a record dimension in the output
- file. This is the most straightforward way of changing a dimension
- to a/the record dimension, and works fine in most cases. See *note
- ncecat netCDF Ensemble Concatenator:: and *note ncpdq netCDF
- Permute Dimensions Quickly:: for other methods of changing variable
- dimensionality, including the record dimension.
-
-'-H'
- Turn-on printing to screen or turn-off copying data (not metadata).
- Also activated using '--print' or '--prn'. By default 'ncks'
- prints all metadata and data to screen if no netCDF output file is
- specified. Use '-H' to print data to screen if a netCDF output is
- specified, or to restrict printing to data (no metadata) when no
- netCDF output is specified. Also use '-H' to turn-off copying data
- (not metadata) to an output file. Unless otherwise specified (with
- '-s'), each element of the data hyperslab prints on a separate line
- containing the names, indices, and, values, if any, of all of the
- variables dimensions. The dimension and variable indices refer to
- the location of the corresponding data element with respect to the
- variable as stored on disk (i.e., not the hyperslab).
- % ncks -C -v three_dmn_var in.nc
- lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
- lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
- lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
- ...
- lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
- lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
- lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
- Printing the same variable with the '-F' option shows the same
- variable indexed with Fortran conventions
- % ncks -F -C -v three_dmn_var in.nc
- lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
- lon(2)=90 lev(1)=100 lat(1)=-90 three_dmn_var(2)=1
- lon(3)=180 lev(1)=100 lat(1)=-90 three_dmn_var(3)=2
- ...
- Printing a hyperslab does not affect the variable or dimension
- indices since these indices are relative to the full variable (as
- stored in the input file), and the input file has not changed.
- However, if the hyperslab is saved to an output file and those
- values are printed, the indices will change:
- % ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc
- ...
- lat[1]=90 lev[2]=1000 lon[0]=0 three_dmn_var[20]=20
- lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
- lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
- lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
- % ncks -C -v three_dmn_var out.nc
- lat[0]=90 lev[0]=1000 lon[0]=0 three_dmn_var[0]=20
- lat[0]=90 lev[0]=1000 lon[1]=90 three_dmn_var[1]=21
- lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
- lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
-
-'-M'
- Turn-on printing to screen or turn-off copying global and group
- metadata. This includes file summary information and global and
- group attributes. Also '--Mtd' and '--Metadata'. By default
- 'ncks' prints global metadata to screen if no netCDF output file
- and no variable extraction list is specified (with '-v'). Use '-M'
- to print global metadata to screen if a netCDF output is specified,
- or if a variable extraction list is specified (with '-v'). Use
- '-M' to turn-off copying of global and group metadata when copying,
- subsetting, or appending to an output file.
-
- The various combinations of printing switches can be confusing. In
- an attempt to anticipate what most users want to do, 'ncks' uses
- context-sensitive defaults for printing. Our goal is to minimize
- the use of switches required to accomplish the common operations.
- We assume that users creating a new file or overwriting (e.g., with
- '-O') an existing file usually wish to copy all global and
- variable-specific attributes to the new file. In contrast, we
- assume that users appending (e.g., with '-A' an explicit variable
- list from one file to another usually wish to copy only the
- variable-specific attributes to the output file. The switches
- '-H', '-M', and '-m' switches are implemented as toggles which
- reverse the default behavior. The most confusing aspect of this is
- that '-M' inhibits copying global metadata in overwrite mode and
- causes copying of global metadata in append mode.
- ncks in.nc # Print VAs and GAs
- ncks -v one in.nc # Print VAs not GAs
- ncks -M -v one in.nc # Print GAs only
- ncks -m -v one in.nc # Print VAs only
- ncks -M -m -v one in.nc # Print VAs and GAs
- ncks -O in.nc out.nc # Copy VAs and GAs
- ncks -O -v one in.nc out.nc # Copy VAs and GAs
- ncks -O -M -v one in.nc out.nc # Copy VAs not GAs
- ncks -O -m -v one in.nc out.nc # Copy GAs not VAs
- ncks -O -M -m -v one in.nc out.nc # Copy only data (no atts)
- ncks -A in.nc out.nc # Append VAs and GAs
- ncks -A -v one in.nc out.nc # Append VAs not GAs
- ncks -A -M -v one in.nc out.nc # Append VAs and GAs
- ncks -A -m -v one in.nc out.nc # Append only data (no atts)
- ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
- where 'VAs' and 'GAs' denote variable and group/global attributes,
- respectively.
-
-'-m'
- Turn-on printing to screen or turn-off copying variable metadata.
- Using '-m' will print variable metadata to screen (similar to
- 'ncdump -h'). This displays all metadata pertaining to each
- variable, one variable at a time. This includes information on the
- storage properties of the variable, such as whether it employs
- chunking, compression, or packing. Also activated using '--mtd'
- and '--metadata'. The 'ncks' default behavior is to print variable
- metadata to screen if no netCDF output file is specified. Use '-m'
- to print variable metadata to screen if a netCDF output is
- specified. Also use '-m' to turn-off copying of variable metadata
- to an output file.
-
-'--no_blank'
- Print numeric representation of missing values. As of NCO As of
- NCO version 4.2.2 (October, 2012), NCO prints missing values as
- blanks (i.e., the underscore character '_') by default. To enable
- the old behavior of printing the numeric representation of missing
- values (e.g., '1.0e36'), use the '--no_blank' switch. Also
- activated using '--noblank' or '--no-blank'.
-
-'-P'
- Print data, metadata, and units to screen. The '-P' switch is a
- convenience abbreviation for '-C -H -M -m -u'. Also activated
- using '--print' or '--prn'. This set of switches is useful for
- exploring file contents.
-
-'-Q'
- Print quietly, meaning omit dimension names, indices, and
- coordinate values when printing arrays. Variable (not dimension)
- indices are printed. Variable names appear flush left in the
- output:
- zender at roulee:~$ ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- three_dmn_rec_var[0]=1
- ...
- This helps locate specific variables in lists with many variables
- and different dimensions. See also the '-V' option, which omits
- all names and indices and prints only variable values.
-
-'-q'
- Quench (turn-off) all printing to screen. This overrides the
- setting of all print-related switches, equivalent to '-H -M -m'
- when in single-file printing mode. When invoked with '-R' (*note
- Retaining Retrieved Files::), 'ncks' automatically sets '-q'. This
- allows 'ncks' to retrieve remote files without automatically trying
- to print them. Also '--quench'.
-
-'--rad'
- Retain all dimensions. When invoked with '--rad' (Retain All
- Dimensions), 'ncks' copies each dimension in the input file to the
- output file, regardless of whether the dimension is utilized by any
- variables. Normally 'ncks' discards "orphan dimensions", i.e.,
- dimensions not referenced by any variables. This switch allows
- users to keep non-referenced dimensions in the workflow. When
- invoked in printing mode, causes orphaned dimensions to be printed
- (they are not printed by default). Also '--retain_all_dimensions',
- '--orphan_dimensions', and '--rph_dmn'.
-
-'-s FORMAT'
- String format for text output. Accepts C language escape sequences
- and 'printf()' formats. Also '--string' and '--sng_fmt'.
-
-'--secret'
- Print summary of 'ncks' hidden features. These hidden or secret
- features are used mainly by developers. They are not supported for
- general use and may change at any time. This demonstrates
- conclusively that I cannot keep a secret. Also '--ssh' and
- '--scr'.
-
-'-u'
- Toggle the printing of a variable's 'units' attribute, if any, with
- its values. Also '--units'.
-
-'-V'
- Print variable values only. Do not print variable and dimension
- names, indices, and coordinate values when printing arrays.
- zender at roulee:~$ ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- 1
- ...
- See also the '-Q' option, which prints variable names and indices,
- but not dimension names, indices, or coordinate values when
- printing arrays. Using '-V' is the same as specifying '-Q
- --no_nm_prn'.
-
-'--xml, --ncml'
- As of NCO version 4.3.3 (July, 2013), 'ncks' can print extracted
- metadata to screen (i.e., 'stdout') as XML in NcML, the netCDF
- Markup Language. 'ncks' supports for XML more completely than of
- 'ncdump -x'. With 'ncks' one can translate entire netCDF3 and
- netCDF4 files into NcML, including metadata and data, using all
- NCO's subsetting and hyperslabbing capabilities. Compare 'ncks'
- "traditional" with XML printing:
- zender at roulee:~$ ncks -v one ~/nco/data/in.nc
- one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
- one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
- one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
- one = 1
-
- zender at roulee:~$ ncks --xml -v one ~/nco/data/in.nc
- <?xml version="1.0" encoding="UTF-8"?>
- <netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2" location="/home/zender/nco/data/in.nc">
- <variable name="one" type="float" shape="">
- <attribute name="long_name" separator="*" value="one" />
- <values>1.</values>
- </variable>
- </netcdf>
- XML-mode prints variable metadata and, as of NCO version 4.3.7
- (October, 2013), variable data and, as of NCO version 4.4.0
- (January, 2014), hidden attributes. That ncks produces correct
- NcML translations of CDM files for all supported datatypes is
- verified by comparison to output from Unidata's 'toolsUI' Java
- program. Please let us know how to improve XML/NcML features.
-
- 'ncks' provides additional options to configure NcML output:
- '--xml_no_location', '--xml_spr_chr', and '--xml_spr_nmr'. Every
- NcML configuration option automatically triggers NcML printing, so
- that specifying '--xml' in addition to a configuration option is
- redundant and unnecessary. The '--xml_no_location' switch prevents
- output of the NcML 'location' element. By default the location
- element is printed with a value equal to the location of the input
- dataset, e.g., 'location="/home/zender/in.nc"'. The
- '--xml_spr_chr' and '--xml_spr_nmr' options customize the strings
- used as NcML separators for attributes and variables of
- character-type and numeric-type, respectively. Their default
- separators are '*' and "' '" (a space):
- zender at roulee:~$ ncks --xml -d time,0,3 -v two_dmn_rec_var_sng in.nc
- ...
- <values separator="*">abc*bcd*cde*def</values>
- ...
- zender at roulee:~$ ncks --xml_spr_chr=', ' -v two_dmn_rec_var_sng in.nc
- ...
- <values separator=", ">abc, bcd, cde, def, efg, fgh, ghi, hij, jkl, klm</values>
- ...
- zender at roulee:~$ ncks --xml -v one_dmn_rec_var in.nc
- ...
- <values>1 2 3 4 5 6 7 8 9 10</values>
- ...
- zender at roulee:~$ ncks --xml_spr_nmr=', ' -v one_dmn_rec_var in.nc
- ...
- <values separator=", ">1, 2, 3, 4, 5, 6, 7, 8, 9, 10</values>
- ...
- Separator elements for strings are a thorny issue. One must be
- sure that the separator element is not mistaken as a portion of the
- string. NCO attempts to produce valid NcML and supplies the
- '--xml_spr_chr' option to work around any difficulties. NCO
- performs precautionary checks with 'strstr(VAL,SPR)' to identify
- presence of the separator string (SPR) in data (VAL) and, when it
- detects a match, automatically switches to a backup separator
- string ('*|*'). However limitations of 'strstr()' may lead to
- false negatives when the separator string occurs in data beyond the
- first string in multi-dimensional 'NC_CHAR' arrays. Hence, results
- may be ambiguous to NcML parsers. If problems arise, use
- '--xml_spr_chr' to specify a multi-character separator that does
- not appear in the string array and that does not include an NcML
- formatting characters (e.g., commas, angles, quotes).
-
- ---------- Footnotes ----------
-
- (1) Those familiar with netCDF mechanics might wish to know what is
-happening here: 'ncks' does not attempt to redefine the variable in
-OUTPUT-FILE to match its definition in INPUT-FILE, 'ncks' merely copies
-the values of the variable and its coordinate dimensions, if any, from
-INPUT-FILE to OUTPUT-FILE.
-
-4.7.1 Filters for 'ncks'
-------------------------
-
-We encourage the use of standard UNIX pipes and filters to narrow the
-verbose output of 'ncks' into more precise targets. For example, to
-obtain an uncluttered listing of the variables in a file try
- ncks -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort
- A Bash user could alias the previous filter to the shell command
-'nclist' as shown below. More complex examples could involve command
-line arguments. For example, a user may frequently be interested in
-obtaining the value of an attribute, e.g., for textual file examination
-or for passing to another shell command. Say the attribute is
-'purpose', the variable is 'z', and the file is 'in.nc'. In this
-example, 'ncks -m -v z' is too verbose so a robust 'grep' and 'cut'
-filter is desirable, such as
- ncks -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort
- The filters are clearly too complex to remember on-the-fly so the
-entire procedure could be implemented as a shell command or function
-called, say, 'ncattget'
- function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
- The shell 'ncattget' is invoked with three arugments that are, in
-order, the names of the attribute, variable, and file to examine.
-Global attributes are indicated by using a variable name of 'global'.
-This definition yields the following results
- % ncattget purpose z in.nc
- Height stored with a monotonically increasing coordinate
- % ncattget Purpose Z in.nc
- Height stored with a monotonically increasing coordinate
- % ncattget history z in.nc
- % ncattget history global in.nc
- History global attribute.
- Note that case sensitivity has been turned off for the variable and
-attribute names (and could be turned on by removing the '-i' switch to
-'grep'). Furthermore, extended regular expressions may be used for both
-the variable and attribute names. The next two commands illustrate this
-by searching for the values of attribute 'purpose' in all variables, and
-then for all attributes of the variable 'z':
- % ncattget purpose .+ in.nc
- 1-D latitude coordinate referred to by geodesic grid variables
- 1-D longitude coordinate referred to by geodesic grid variables
- ...
- % ncattget .+ Z in.nc
- Height
- Height stored with a monotonically increasing coordinate
- meter
-
- Extended filters are best stored as shell commands if they are used
-frequently. Shell commands may be re-used when they are defined in
-shell configuration files. These files are usually named '.bashrc',
-'.cshrc', and '.profile' for the Bash, Csh, and Sh shells, respectively.
- # NB: Untested on Csh, Ksh, Sh, Zsh! Send us feedback!
- # Bash shell (/bin/bash) users place these in .bashrc
- # ncattget $att_nm $var_nm $fl_nm : What attributes does variable have?
- function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
- # ncunits $att_val $fl_nm : Which variables have given units?
- function ncunits { ncks -M -m ${2} | grep -E -i " attribute [0-9]+: units.+ ${1}" | cut -f 1 -d ' ' | sort ; }
- # ncavg $var_nm $fl_nm : What is mean of variable?
- function ncavg { ncwa -y avg -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncavg $var_nm $fl_nm : What is mean of variable?
- function ncavg { ncap2 -O -C -v -s "foo=${1}.avg();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncdmnsz $dmn_nm $fl_nm : What is dimension size?
- function ncdmnsz { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
- # nclist $fl_nm : What variables are in file?
- function nclist { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
- # ncmax $var_nm $fl_nm : What is maximum of variable?
- function ncmax { ncwa -y max -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncmax $var_nm $fl_nm : What is maximum of variable?
- function ncmax { ncap2 -O -C -v -s "foo=${1}.max();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncmdn $var_nm $fl_nm : What is median of variable?
- function ncmdn { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncrng $var_nm $fl_nm : What is range of variable?
- function ncrng { ncap2 -O -C -v -s "foo_min=${1}.min();foo_max=${1}.max();print(foo_min,\"%f\");print(\" to \");print(foo_max,\"%f\")" ${2} ~/foo.nc ; }
- # ncmode $var_nm $fl_nm : What is mode of variable?
- function ncmode { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
- # ncrecsz $fl_nm : What is record dimension size?
- function ncrecsz { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
- # Csh shell (/bin/csh) users place these in .cshrc
- ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
- ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
- nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
- ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
- # Sh shell (/bin/sh) users place these in .profile
- ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
- ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
- nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
- ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-
-EXAMPLES
-
- View all data in netCDF 'in.nc', printed with Fortran indexing
-conventions:
- ncks -F in.nc
-
- Copy the netCDF file 'in.nc' to file 'out.nc'.
- ncks in.nc out.nc
- Now the file 'out.nc' contains all the data from 'in.nc'. There are,
-however, two differences between 'in.nc' and 'out.nc'. First, the
-'history' global attribute (*note History Attribute::) will contain the
-command used to create 'out.nc'. Second, the variables in 'out.nc' will
-be defined in alphabetical order. Of course the internal storage of
-variable in a netCDF file should be transparent to the user, but there
-are cases when alphabetizing a file is useful (see description of '-a'
-switch).
-
- Copy all global attributes (and no variables) from 'in.nc' to
-'out.nc':
- ncks -A -x ~/nco/data/in.nc ~/out.nc
- The '-x' switch tells NCO to use the complement of the extraction
-list (*note Subsetting Files::). Since no extraction list is explicitly
-specified (with '-v'), the default is to extract all variables. The
-complement of all variables is no variables. Without any variables to
-extract, the append ('-A') command (*note Appending Variables::) has
-only to extract and copy (i.e., append) global attributes to the output
-file.
-
- Copy/append metadata (not data) from variables in one file to
-variables in a second file. When copying/subsetting/appending files (as
-opposed to printing them), the copying of data, variable metadata, and
-global/group metadata are now turned OFF by '-H', '-m', and '-M',
-respectively. This is the opposite sense in which these switches work
-when _printing_ a file. One can use these switches to easily replace
-data or metadata in one file with data or metadata from another:
- # Extract naked (data-only) copies of two variables
- ncks -h -M -m -O -C -v one,three_dmn_rec_var ~/nco/data/in.nc ~/out.nc
- # Change values to be sure original values are not copied in following step
- ncap2 -O -v -s 'one*=2;three_dmn_rec_var*=0' ~/nco/data/in.nc ~/in2.nc
- # Append in2.nc metadata (not data!) to out.nc
- ncks -A -C -H -v one,three_dmn_rec_var ~/in2.nc ~/out.nc
- Variables in 'out.nc' now contain data (not metadata) from 'in.nc'
-and metadata (not data) from 'in2.nc'.
-
- Print variable 'three_dmn_var' from file 'in.nc' with default
-notations. Next print 'three_dmn_var' as an un-annotated text column.
-Then print 'three_dmn_var' signed with very high precision. Finally,
-print 'three_dmn_var' as a comma-separated list.
- % ncks -C -v three_dmn_var in.nc
- lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
- lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
- ...
- lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
- % ncks -s '%f\n' -C -v three_dmn_var in.nc
- 0.000000
- 1.000000
- ...
- 23.000000
- % ncks -s '%+16.10f\n' -C -v three_dmn_var in.nc
- +0.0000000000
- +1.0000000000
- ...
- +23.0000000000
- % ncks -s '%f, ' -C -v three_dmn_var in.nc
- 0.000000, 1.000000, ..., 23.000000,
-Programmers will recognize these as the venerable C language 'printf()'
-formatting strings. The second and third options are useful when
-pasting data into text files like reports or papers. *Note ncatted
-netCDF Attribute Editor::, for more details on string formatting and
-special characters.
-
- As of NCO version 4.2.2 (October, 2012), NCO prints missing values as
-blanks (i.e., the underscore character '_') by default:
- % ncks -C -H -v mss_val in.nc
- lon[0]=0 mss_val[0]=73
- lon[1]=90 mss_val[1]=_
- lon[2]=180 mss_val[2]=73
- lon[3]=270 mss_val[3]=_
- % ncks -s '%+5.1f, ' -H -C -v mss_val in.nc
- +73.0, _, +73.0, _,
- To print the numeric value of the missing value instead of a blank,
-use the '--no_blank' option.
-
- 'ncks' prints in a verbose fashion by default and supplies a number
-of switches to pare-down (or even spruce-up) the output. The interplay
-of the '-Q', '-V', and (otherwise undocumented) '--no_nm_prn' switches
-yields most desired verbosities:
- % ncks -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- time[0]=1 lat[0]=-90 lon[0]=0 three_dmn_rec_var[0]=1
- % ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- three_dmn_rec_var[0]=1
- % ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- 1
- % ncks -Q --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- 1
- % ncks --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
- 1 -90 0 1
-
- One dimensional arrays of characters stored as netCDF variables are
-automatically printed as strings, whether or not they are
-NUL-terminated, e.g.,
- ncks -v fl_nm in.nc
-The '%c' formatting code is useful for printing multidimensional arrays
-of characters representing fixed length strings
- ncks -s '%c' -v fl_nm_arr in.nc
-Using the '%s' format code on strings which are not NUL-terminated (and
-thus not technically strings) is likely to result in a core dump.
-
- Create netCDF 'out.nc' containing all variables, and any associated
-coordinates, except variable 'time', from netCDF 'in.nc':
- ncks -x -v time in.nc out.nc
- As a special case of this, consider how to remove a variable such as
-'time_bounds' that is identified in a CF Convention (*note CF
-Conventions::) compliant 'ancillary_variables', 'bounds', or
-'coordinates' attribute. NCO subsetting assumes the user wants all
-ancillary variables, axes, bounds and coordinates associated with all
-extracted variables (*note Subsetting Coordinate Variables::). Hence to
-exclude a 'ancillary_variables', 'bounds', or 'coordinates' variable
-while retaining the "parent" variable (here 'time'), one must use the
-'-C' switch:
- ncks -C -x -v time_bounds in.nc out.nc
- The '-C' switch tells the operator _NOT_ to necessarily include all
-the CF ancillary variables, axes, bounds, and coordinates. Hence the
-output file will contain 'time' and not 'time_bounds'.
-
- Extract variables 'time' and 'pressure' from netCDF 'in.nc'. If
-'out.nc' does not exist it will be created. Otherwise the you will be
-prompted whether to append to or to overwrite 'out.nc':
- ncks -v time,pressure in.nc out.nc
- ncks -C -v time,pressure in.nc out.nc
-The first version of the command creates an 'out.nc' which contains
-'time', 'pressure', and any coordinate variables associated with
-PRESSURE. The 'out.nc' from the second version is guaranteed to contain
-only two variables 'time' and 'pressure'.
-
- Create netCDF 'out.nc' containing all variables from file 'in.nc'.
-Restrict the dimensions of these variables to a hyperslab. Print (with
-'-H') the hyperslabs to the screen for good measure. The specified
-hyperslab is: the fifth value in dimension 'time'; the half-open range
-LAT > 0. in coordinate 'lat'; the half-open range LON < 330. in
-coordinate 'lon'; the closed interval 0.3 < BAND < 0.5 in coordinate
-'band'; and cross-section closest to 1000. in coordinate 'lev'. Note
-that limits applied to coordinate values are specified with a decimal
-point, and limits applied to dimension indices do not have a decimal
-point *Note Hyperslabs::.
- ncks -H -d time,5 -d lat,,0.0 -d lon,330.0, -d band,0.3,0.5
- -d lev,1000.0 in.nc out.nc
-
- Assume the domain of the monotonically increasing longitude
-coordinate 'lon' is 0 < LON < 360. Here, 'lon' is an example of a
-wrapped coordinate. 'ncks' will extract a hyperslab which crosses the
-Greenwich meridian simply by specifying the westernmost longitude as MIN
-and the easternmost longitude as MAX, as follows:
- ncks -d lon,260.0,45.0 in.nc out.nc
- For more details *Note Wrapped Coordinates::.
-
-4.8 'ncpdq' netCDF Permute Dimensions Quickly
-=============================================
-
-SYNTAX
- ncpdq [-3] [-4] [-6] [-7] [-A] [-a [-]DIM[,...]] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]]
- [-F] [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdf] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [-M PCK_MAP] [--mrd] [--no_tmp_fl]
- [-O] [-o OUTPUT-FILE] [-P PCK_PLC] [-p PATH] [--ppc ...]
- [-R] [-r] [--ram_all] [-t THR_NBR] [-U] [--unn] [-v VAR[,...]] [-X ...] [-x]
- INPUT-FILE [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncpdq' performs one (not both) of two distinct functions: packing or
-dimension permutation. 'ncpdq' is optimized to perform these actions in
-a parallel fashion with a minimum of time and memory. The "pdq" may
-stand for "Permute Dimensions Quickly", "Pack Data Quietly", "Pillory
-Dan Quayle", or other silly uses.
-
-Packing and Unpacking Functions
--------------------------------
-
-The 'ncpdq' packing (and unpacking) algorithms are described in *note
-Methods and functions::, and are also implemented in 'ncap2'. 'ncpdq'
-extends the functionality of these algorithms by providing high level
-control of the "packing policy" so that users can consistently pack (and
-unpack) entire files with one command. The user specifies the desired
-packing policy with the '-P' switch (or its long option equivalents,
-'--pck_plc' and '--pack_policy') and its PCK_PLC argument. Four packing
-policies are currently implemented:
-"Packing (and Re-Packing) Variables [_default_]"
- Definition: Pack unpacked variables, re-pack packed variables
- Alternate invocation: 'ncpack'
- PCK_PLC key values: 'all_new', 'pck_all_new_att'
-"Packing (and not Re-Packing) Variables"
- Definition: Pack unpacked variables, copy packed variables
- Alternate invocation: none
- PCK_PLC key values: 'all_xst', 'pck_all_xst_att'
-"Re-Packing Variables"
- Definition: Re-pack packed variables, copy unpacked variables
- Alternate invocation: none
- PCK_PLC key values: 'xst_new', 'pck_xst_new_att'
-"Unpacking"
- Definition: Unpack packed variables, copy unpacked variables
- Alternate invocation: 'ncunpack'
- PCK_PLC key values: 'upk', 'unpack', 'pck_upk'
-Equivalent key values are fully interchangeable. Multiple equivalent
-options are provided to satisfy disparate needs and tastes of NCO users
-working with scripts and from the command line.
-
- Regardless of the packing policy selected, 'ncpdq' no longer (as of
-NCO version 4.0.4 in October, 2010) packs coordinate variables, or the
-special variables, weights, and other grid properties described in *note
-CF Conventions::. Prior 'ncpdq' versions treated coordinate variables
-and grid properties no differently from other variables. However,
-coordinate variables are one-dimensional, so packing saves little space
-on large files, and the resulting files are difficult for humans to
-read. 'ncpdq' will, of course, _unpack_ coordinate variables and
-weights, for example, in case some other, non-NCO software packed them
-in the first place.
-
- Concurrently, Gaussian and area weights and other grid properties are
-often used to derive fields in re-inflated (unpacked) files, so packing
-such grid properties causes a considerable loss of precision in
-downstream data processing. If users express strong wishes to pack grid
-properties, we will implement new packing policies. An immediate
-workaround for those needing to pack grid properties now, is to use the
-'ncap2' packing functions or to rename the grid properties prior to
-calling 'ncpdq'. We welcome your feedback.
-
- To reduce required memorization of these complex policy switches,
-'ncpdq' may also be invoked via a synonym or with switches that imply a
-particular policy. 'ncpack' is a synonym for 'ncpdq' and behaves the
-same in all respects. Both 'ncpdq' and 'ncpack' assume a default
-packing policy request of 'all_new'. Hence 'ncpack' may be invoked
-without any '-P' switch, unlike 'ncpdq'. Similarly, 'ncunpack' is a
-synonym for 'ncpdq' except that 'ncpack' implicitly assumes a request to
-unpack, i.e., '-P pck_upk'. Finally, the 'ncpdq' '-U' switch (or its
-long option equivalents, '--upk' and '--unpack') requires no argument.
-It simply requests unpacking.
-
- Given the menagerie of synonyms, equivalent options, and implied
-options, a short list of some equivalent commands is appropriate. The
-following commands are equivalent for packing: 'ncpdq -P all_new',
-'ncpdq --pck_plc=all_new', and 'ncpack'. The following commands are
-equivalent for unpacking: 'ncpdq -P upk', 'ncpdq -U', 'ncpdq
---pck_plc=unpack', and 'ncunpack'. Equivalent commands for other
-packing policies, e.g., 'all_xst', follow by analogy. Note that 'ncpdq'
-synonyms are subject to the same constraints and recommendations
-discussed in the secion on 'ncbo' synonyms (*note ncbo netCDF Binary
-Operator::). That is, symbolic links must exist from the synonym to
-'ncpdq', or else the user must define an 'alias'.
-
- The 'ncpdq' packing algorithms must know to which type particular
-types of input variables are to be packed. The correspondence between
-the input variable type and the output, packed type, is called the
-"packing map". The user specifies the desired packing map with the '-M'
-switch (or its long option equivalents, '--pck_map' and '--map') and its
-PCK_MAP argument. Five packing maps are currently implemented:
-"Pack Floating Precisions to 'NC_SHORT' [_default_]"
- Definition: Pack floating precision types to 'NC_SHORT'
- Map: Pack ['NC_DOUBLE','NC_FLOAT'] to 'NC_SHORT'
- Types copied instead of packed:
- ['NC_INT64','NC_UINT64','NC_INT','NC_UINT','NC_SHORT','NC_USHORT','NC_CHAR','NC_BYTE','NC_UBYTE']
- PCK_MAP key values: 'flt_sht', 'pck_map_flt_sht'
-"Pack Floating Precisions to 'NC_BYTE'"
- Definition: Pack floating precision types to 'NC_BYTE'
- Map: Pack ['NC_DOUBLE','NC_FLOAT'] to 'NC_BYTE'
- Types copied instead of packed:
- ['NC_INT64','NC_UINT64','NC_INT','NC_UINT','NC_SHORT','NC_USHORT','NC_CHAR','NC_BYTE','NC_UBYTE']
- PCK_MAP key values: 'flt_byt', 'pck_map_flt_byt'
-"Pack Higher Precisions to 'NC_SHORT'"
- Definition: Pack higher precision types to 'NC_SHORT'
- Map: Pack
- ['NC_DOUBLE','NC_FLOAT','NC_INT64','NC_UINT64','NC_INT','NC_UINT']
- to 'NC_SHORT'
- Types copied instead of packed:
- ['NC_SHORT','NC_USHORT','NC_CHAR','NC_BYTE','NC_UBYTE']
- PCK_MAP key values: 'hgh_sht', 'pck_map_hgh_sht'
-"Pack Higher Precisions to 'NC_BYTE'"
- Definition: Pack higher precision types to 'NC_BYTE'
- Map: Pack
- ['NC_DOUBLE','NC_FLOAT','NC_INT64','NC_UINT64','NC_INT','NC_UINT','NC_SHORT','NC_USHORT']
- to 'NC_BYTE'
- Types copied instead of packed: ['NC_CHAR','NC_BYTE','NC_UBYTE']
- PCK_MAP key values: 'hgh_byt', 'pck_map_hgh_byt'
-"Pack to Next Lesser Precision"
- Definition: Pack each type to type of next lesser size
- Map: Pack ['NC_DOUBLE','NC_INT64','NC_UINT64'], to 'NC_INT'. Pack
- ['NC_FLOAT','NC_INT','NC_UINT'] to 'NC_SHORT'. Pack
- ['NC_SHORT','NC_USHORT'] to 'NC_BYTE'.
- Types copied instead of packed: ['NC_CHAR','NC_BYTE','NC_UBYTE']
- PCK_MAP key values: 'nxt_lsr', 'pck_map_nxt_lsr'
-The default 'all_new' packing policy with the default 'flt_sht' packing
-map reduces the typical 'NC_FLOAT'-dominated file size by about 50%.
-'flt_byt' packing reduces an 'NC_DOUBLE'-dominated file by about 87%.
-
- The netCDF packing algorithm (*note Methods and functions::) is
-lossy--once packed, the exact original data cannot be recovered without
-a full backup. Hence users should be aware of some packing caveats:
-First, the interaction of packing and data equal to the _FILLVALUE is
-complex. Test the '_FillValue' behavior by performing a pack/unpack
-cycle to ensure data that are missing _stay_ missing and data that are
-not misssing do not join the Air National Guard and go missing. This
-may lead you to elect a new _FILLVALUE. Second, 'ncpdq' actually allows
-packing into 'NC_CHAR' (with, e.g., 'flt_chr'). However, the intrinsic
-conversion of 'signed char' to higher precision types is tricky for
-values equal to zero, i.e., for 'NUL'. Hence packing to 'NC_CHAR' is
-not documented or advertised. Pack into 'NC_BYTE' (with, e.g.,
-'flt_byt') instead.
-
-Dimension Permutation
----------------------
-
-'ncpdq' re-shapes variables in INPUT-FILE by re-ordering and/or
-reversing dimensions specified in the dimension list. The dimension
-list is a whitespace-free, comma separated list of dimension names,
-optionally prefixed by negative signs, that follows the '-a' (or long
-options '--arrange', '--permute', '--re-order', or '--rdr') switch. To
-re-order variables by a subset of their dimensions, specify these
-dimensions in a comma-separated list following '-a', e.g., '-a lon,lat'.
-To reverse a dimension, prefix its name with a negative sign in the
-dimension list, e.g., '-a -lat'. Re-ordering and reversal may be
-performed simultaneously, e.g., '-a lon,-lat,time,-lev'.
-
- Users may specify any permutation of dimensions, including
-permutations which change the record dimension identity. The record
-dimension is re-ordered like any other dimension. This unique 'ncpdq'
-capability makes it possible to concatenate files along any dimension.
-See *note Concatenation:: for a detailed example. The record dimension
-is always the most slowly varying dimension in a record variable (*note
-C and Fortran Index Conventions::). The specified re-ordering fails if
-it requires creating more than one record dimension amongst all the
-output variables (1).
-
- Two special cases of dimension re-ordering and reversal deserve
-special mention. First, it may be desirable to completely reverse the
-storage order of a variable. To do this, include all the variable's
-dimensions in the dimension re-order list in their original order, and
-prefix each dimension name with the negative sign. Second, it may
-useful to transpose a variable's storage order, e.g., from C to Fortran
-data storage order (*note C and Fortran Index Conventions::). To do
-this, include all the variable's dimensions in the dimension re-order
-list in reversed order. Explicit examples of these two techniques
-appear below.
-
-EXAMPLES
-
- Pack and unpack all variables in file 'in.nc' and store the results
-in 'out.nc':
- ncpdq in.nc out.nc # Same as ncpack in.nc out.nc
- ncpdq -P all_new -M flt_sht in.nc out.nc # Defaults
- ncpdq -P all_xst in.nc out.nc
- ncpdq -P upk in.nc out.nc # Same as ncunpack in.nc out.nc
- ncpdq -U in.nc out.nc # Same as ncunpack in.nc out.nc
- The first two commands pack any unpacked variable in the input file.
-They also unpack and then re-pack every packed variable. The third
-command only packs unpacked variables in the input file. If a variable
-is already packed, the third command copies it unchanged to the output
-file. The fourth and fifth commands unpack any packed variables. If a
-variable is not packed, the third command copies it unchanged.
-
- The previous examples all utilized the default packing map. Suppose
-you wish to archive all data that are currently unpacked into a form
-which only preserves 256 distinct values. Then you could specify the
-packing map PCK_MAP as 'hgh_byt' and the packing policy PCK_PLC as
-'all_xst':
- ncpdq -P all_xst -M hgh_byt in.nc out.nc
- Many different packing maps may be used to construct a given file by
-performing the packing on subsets of variables (e.g., with '-v') and
-using the append feature with '-A' (*note Appending Variables::).
-
- Users may wish to unpack data packed with the HDF convention, and
-then re-pack it with the netCDF convention so that all their datasets
-use the same packing convention prior to intercomparison.
- # One-step procedure: For NCO 4.4.0+, netCDF 4.3.1+
- # 1. Convert, unpack, and repack HDF file into netCDF file
- ncpdq --hdf_upk -P xst_new modis.hdf modis.nc # HDF4 files
- ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5 files
-
- # One-step procedure: For NCO 4.3.7--4.3.9
- # 1. Convert, unpack, and repack HDF file into netCDF file
- ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc # HDF4
- ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5
-
- # Two-step procedure: For NCO 4.3.6 and earlier
- # 1. Convert HDF file to netCDF file
- ncl_convert2nc modis.hdf
- # 2. Unpack using HDF convention and repack using netCDF convention
- ncpdq --hdf_upk -P xst_new modis.nc modis.nc
- NCO now (2) automatically detects HDF4 files. In this case it
-produces an output file 'modis.nc' which preserves the HDF packing used
-in the input file. The 'ncpdq' command first unpacks all packed
-variables using the HDF unpacking algorithm (as specified by
-'--hdf_upk'), and then repacks those same variables using the netCDF
-algorithm (because that is the only algorithm NCO packs with). As
-described above the '--P xst_new' packing policy only repacks variables
-that are already packed. Not-packed variables are copied directly
-without loss of precision (3).
-
- Re-order file 'in.nc' so that the dimension 'lon' always precedes the
-dimension 'lat' and store the results in 'out.nc':
- ncpdq -a lon,lat in.nc out.nc
- ncpdq -v three_dmn_var -a lon,lat in.nc out.nc
- The first command re-orders every variable in the input file. The
-second command extracts and re-orders only the variable 'three_dmn_var'.
-
- Suppose the dimension 'lat' represents latitude and monotonically
-increases increases from south to north. Reversing the 'lat' dimension
-means re-ordering the data so that latitude values decrease
-monotonically from north to south. Accomplish this with
- % ncpdq -a -lat in.nc out.nc
- % ncks -C -v lat in.nc
- lat[0]=-90
- lat[1]=90
- % ncks -C -v lat out.nc
- lat[0]=90
- lat[1]=-90
- This operation reversed the latitude dimension of all variables.
-Whitespace immediately preceding the negative sign that specifies
-dimension reversal may be dangerous. Quotes and long options can help
-protect negative signs that should indicate dimension reversal from
-being interpreted by the shell as dashes that indicate new command line
-switches.
- ncpdq -a -lat in.nc out.nc # Dangerous? Whitespace before "-lat"
- ncpdq -a '-lat' in.nc out.nc # OK. Quotes protect "-" in "-lat"
- ncpdq -a lon,-lat in.nc out.nc # OK. No whitespace before "-"
- ncpdq --rdr=-lat in.nc out.nc # Preferred. Uses "=" not whitespace
-
- To create the mathematical transpose of a variable, place all its
-dimensions in the dimension re-order list in reversed order. This
-example creates the transpose of 'three_dmn_var':
- % ncpdq -a lon,lev,lat -v three_dmn_var in.nc out.nc
- % ncks -C -v three_dmn_var in.nc
- lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
- lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
- lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
- ...
- lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
- lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
- lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
- % ncks -C -v three_dmn_var out.nc
- lon[0]=0 lev[0]=100 lat[0]=-90 three_dmn_var[0]=0
- lon[0]=0 lev[0]=100 lat[1]=90 three_dmn_var[1]=12
- lon[0]=0 lev[1]=500 lat[0]=-90 three_dmn_var[2]=4
- ...
- lon[3]=270 lev[1]=500 lat[1]=90 three_dmn_var[21]=19
- lon[3]=270 lev[2]=1000 lat[0]=-90 three_dmn_var[22]=11
- lon[3]=270 lev[2]=1000 lat[1]=90 three_dmn_var[23]=23
-
- To completely reverse the storage order of a variable, include all
-its dimensions in the re-order list, each prefixed by a negative sign.
-This example reverses the storage order of 'three_dmn_var':
- % ncpdq -a -lat,-lev,-lon -v three_dmn_var in.nc out.nc
- % ncks -C -v three_dmn_var in.nc
- lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
- lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
- lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
- ...
- lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
- lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
- lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
- % ncks -C -v three_dmn_var out.nc
- lat[0]=90 lev[0]=1000 lon[0]=270 three_dmn_var[0]=23
- lat[0]=90 lev[0]=1000 lon[1]=180 three_dmn_var[1]=22
- lat[0]=90 lev[0]=1000 lon[2]=90 three_dmn_var[2]=21
- ...
- lat[1]=-90 lev[2]=100 lon[1]=180 three_dmn_var[21]=2
- lat[1]=-90 lev[2]=100 lon[2]=90 three_dmn_var[22]=1
- lat[1]=-90 lev[2]=100 lon[3]=0 three_dmn_var[23]=0
-
- Creating a record dimension named, e.g., 'time', in a file which has
-no existing record dimension is simple with 'ncecat':
- ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"
-
- Now consider a file with all dimensions, including 'time', fixed
-(non-record). Suppose the user wishes to convert 'time' from a fixed
-dimension to a record dimension. This may be useful, for example, when
-the user wishes to append additional time slices to the data. As of NCO
-version 4.0.1 (April, 2010) the preferred method for doing this is with
-'ncks':
- ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dimension
-
- Prior to 4.0.1, the procedure to change an existing fixed dimension
-into a record dimension required three separate commands, 'ncecat'
-followed by 'ncpdq', and then 'ncwa'. The recommended method is now to
-use 'ncks --fix_rec_dmn', yet it is still instructive to present the
-original procedure, as it shows how multiple operators can achieve the
-same ends by different means:
- ncecat -O in.nc out.nc # Add degenerate record dimension named "record"
- ncpdq -O -a time,record out.nc out.nc # Switch "record" and "time"
- ncwa -O -a record out.nc out.nc # Remove (degenerate) "record"
-The first step creates a degenerate (size equals one) record dimension
-named (by default) 'record'. The second step swaps the ordering of the
-dimensions named 'time' and 'record'. Since 'time' now occupies the
-position of the first (least rapidly varying) dimension, it becomes the
-record dimension. The dimension named 'record' is no longer a record
-dimension. The third step averages over this degenerate 'record'
-dimension. Averaging over a degenerate dimension does not alter the
-data. The ordering of other dimensions in the file ('lat', 'lon', etc.)
-is immaterial to this procedure. See *note ncecat netCDF Ensemble
-Concatenator:: and *note ncks netCDF Kitchen Sink:: for other methods of
-changing variable dimensionality, including the record dimension.
-
- ---------- Footnotes ----------
-
- (1) This limitation, imposed by the netCDF storage layer, may be
-relaxed in the future with netCDF4.
-
- (2) Prior to NCO 4.4.0 and netCDF 4.3.1 (January, 2014), NCO requires
-the '--hdf4' switch to correctly read HDF4 input files. For example,
-'ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc'. That switch is
-now obsolete, though harmless for backwards compatibility. Prior to
-version 4.3.7 (October, 2013), NCO lacked the software necessary to
-workaround netCDF library flaws handling HDF4 files, and thus NCO failed
-to convert HDF4 files to netCDF files. In those cases, use the
-'ncl_convert2nc' command distributed with NCL to convert HDF4 files to
-netCDF.
-
- (3) 'ncpdq' does not support packing data using the HDF convention.
-Although it is now straightforward to support this, we think it might
-sow more confusion than it reaps. Let us know if you disagree and would
-like NCO to support packing data with HDF algorithm.
-
-4.9 'ncra' netCDF Record Averager
-=================================
-
-SYNTAX
- ncra [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE][,[SUBCYCLE]]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdf] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [--mro] [-n LOOP] [--no_tmp_fl]
- [-O] [-o OUTPUT-FILE] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [--rth_dbl|flt]
- [-t THR_NBR] [--unn] [-v VAR[,...]] [-X ...] [-x] [-y OP_TYP]
- [INPUT-FILES] [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncra' averages record variables across an arbitrary number of
-INPUT-FILES. The record dimension is, by default, retained as a
-degenerate (size 1) dimension in the output variables. *Note Statistics
-vs. Concatenation::, for a description of the distinctions between the
-various statistics tools and concatenators. As a multi-file operator,
-'ncra' will read the list of INPUT-FILES from 'stdin' if they are not
-specified as positional arguments on the command line (*note Large
-Numbers of Files::).
-
- Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated). Hyperslabs of the record dimension which
-include more than one file work correctly. 'ncra' supports the STRIDE
-argument to the '-d' hyperslab option (*note Hyperslabs::) for the
-record dimension only, STRIDE is not supported for non-record
-dimensions.
-
- 'ncra' weights each record (e.g., time slice) in the INPUT-FILES
-equally. 'ncra' does not attempt to see if, say, the 'time' coordinate
-is irregularly spaced and thus would require a weighted average in order
-to be a true time average. 'ncra' _always averages_ coordinate
-variables regardless of the arithmetic operation type performed on the
-non-coordinate variables. (*note Operation Types::).
-
-EXAMPLES
-
- Average files '85.nc', '86.nc', ... '89.nc' along the record
-dimension, and store the results in '8589.nc':
- ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
- ncra 8[56789].nc 8589.nc
- ncra -n 5,2,1 85.nc 8589.nc
- These three methods produce identical answers. *Note Specifying
-Input Files::, for an explanation of the distinctions between these
-methods.
-
- Assume the files '85.nc', '86.nc', ... '89.nc' each contain a record
-coordinate TIME of length 12 defined such that the third record in
-'86.nc' contains data from March 1986, etc. NCO knows how to hyperslab
-the record dimension across files. Thus, to average data from December,
-1985 through February, 1986:
- ncra -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
- ncra -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-The file '87.nc' is superfluous, but does not cause an error. The '-F'
-turns on the Fortran (1-based) indexing convention. The following uses
-the STRIDE option to average all the March temperature data from
-multiple input files into a single output file
- ncra -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
- *Note Stride::, for a description of the STRIDE argument.
-
- Assume the TIME coordinate is incrementally numbered such that
-January, 1985 = 1 and December, 1989 = 60. Assuming '??' only expands
-to the five desired files, the following averages June, 1985-June, 1989:
- ncra -d time,6.,54. ??.nc 8506_8906.nc
-
-4.10 'ncrcat' netCDF Record Concatenator
-========================================
-
-SYNTAX
- ncrcat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE][,[SUBCYCLE]]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdr_pad NBR]
- [-L DFL_LVL] [-l PATH] [--md5_digest] [-n LOOP] [--no_tmp_fl]
- [-O] [-o OUTPUT-FILE] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn]
- [-t THR_NBR] [--unn] [-v VAR[,...]] [-X ...] [-x]
- [INPUT-FILES] [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncrcat' concatenates record variables across an arbitrary number of
-INPUT-FILES. The final record dimension is by default the sum of the
-lengths of the record dimensions in the input files. *Note Statistics
-vs. Concatenation::, for a description of the distinctions between the
-various statistics tools and concatenators. As a multi-file operator,
-'ncrcat' will read the list of INPUT-FILES from 'stdin' if they are not
-specified as positional arguments on the command line (*note Large
-Numbers of Files::).
-
- Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated). Hyperslabs along the record dimension that
-span more than one file are handled correctly. 'ncra' supports the
-STRIDE argument to the '-d' hyperslab option for the record dimension
-only, STRIDE is not supported for non-record dimensions.
-
- Concatenating a variable packed with different scales multiple
-datasets is beyond the capabilities of 'ncrcat' (and 'ncecat', the other
-concatenator (*note Concatenation::). 'ncrcat' does not unpack data, it
-simply _copies_ the data from the INPUT-FILES, and the metadata from the
-_first_ INPUT-FILE, to the OUTPUT-FILE. This means that data compressed
-with a packing convention must use the identical packing parameters
-(e.g., 'scale_factor' and 'add_offset') for a given variable across
-_all_ input files. Otherwise the concatenated dataset will not unpack
-correctly. The workaround for cases where the packing parameters differ
-across INPUT-FILES requires three steps: First, unpack the data using
-'ncpdq'. Second, concatenate the unpacked data using 'ncrcat', Third,
-re-pack the result with 'ncpdq'.
-
- 'ncrcat' applies special rules to ARM convention time fields (e.g.,
-'time_offset'). See *note ARM Conventions:: for a complete description.
-
-EXAMPLES
-
- Concatenate files '85.nc', '86.nc', ... '89.nc' along the record
-dimension, and store the results in '8589.nc':
- ncrcat 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
- ncrcat 8[56789].nc 8589.nc
- ncrcat -n 5,2,1 85.nc 8589.nc
-These three methods produce identical answers. *Note Specifying Input
-Files::, for an explanation of the distinctions between these methods.
-
- Assume the files '85.nc', '86.nc', ... '89.nc' each contain a record
-coordinate TIME of length 12 defined such that the third record in
-'86.nc' contains data from March 1986, etc. NCO knows how to hyperslab
-the record dimension across files. Thus, to concatenate data from
-December, 1985-February, 1986:
- ncrcat -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
- ncrcat -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-The file '87.nc' is superfluous, but does not cause an error. When
-'ncra' and 'ncrcat' encounter a file which does contain any records that
-meet the specified hyperslab criteria, they disregard the file and
-proceed to the next file without failing. The '-F' turns on the Fortran
-(1-based) indexing convention.
-
- The following uses the STRIDE option to concatenate all the March
-temperature data from multiple input files into a single output file
- ncrcat -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
- *Note Stride::, for a description of the STRIDE argument.
-
- Assume the TIME coordinate is incrementally numbered such that
-January, 1985 = 1 and December, 1989 = 60. Assuming '??' only expands
-to the five desired files, the following concatenates June, 1985-June,
-1989:
- ncrcat -d time,6.,54. ??.nc 8506_8906.nc
-
-4.11 'ncrename' netCDF Renamer
-==============================
-
-SYNTAX
- ncrename [-a OLD_NAME,NEW_NAME] [-a ...] [-D DBG]
- [-d OLD_NAME,NEW_NAME] [-d ...] [-g OLD_NAME,NEW_NAME] [-g ...]
- [-h] [--hdf] [--hdr_pad NBR] [-l PATH] [-O] [-o OUTPUT-FILE] [-p PATH] [-R] [-r]
- [-v OLD_NAME,NEW_NAME] [-v ...]
- INPUT-FILE [[OUTPUT-FILE]]
-
-DESCRIPTION
-
- 'ncrename' renames netCDF dimensions, variables, attributes, and
-groups. Each object that has a name in the list of old names is renamed
-using the corresponding name in the list of new names. All the new
-names must be unique. Every old name must exist in the input file,
-unless the old name is preceded by the period (or "dot") character '.'.
-The validity of OLD_NAME is not checked prior to the renaming. Thus, if
-OLD_NAME is specified without the '.' prefix that indicates the presence
-of OLD_NAME is optional, and OLD_NAME is not present in INPUT-FILE, then
-'ncrename' will abort. The NEW_NAME should never be prefixed by a '.'
-(or else the period will be included as part of the new name). As of
-NCO version 4.4.6 (released October, 2014), the OLD_NAME and NEW_NAME
-arguments may include (or be, for groups) partial or full group paths.
-The OPTIONS and EXAMPLES show how to select specific variables whose
-attributes are to be renamed.
-
- Caveat lector: Unforunately from 2007-present (October, 2014) the
-netCDF library (versions 4.0.0-4.3.2) contained bugs or limitations that
-sometimes prevent NCO from correctly renaming coordinate variables,
-dimensions, and groups in netCDF4 files. (To our knowledge the netCDF
-library calls for renaming always work well on netCDF3 files so one
-workaround to some netCDF4 issues is convert to netCDF3, rename, then
-convert back). To understand the renaming limitations associated with
-particular netCDF versions, read the 'ncrename' documentation below in
-its entirety.
-
- Although 'ncrename' supports full pathnames for both OLD_NAME and
-NEW_NAME, this is really "window dressing". The full-path to NEW_NAME
-must be identical to the full-path to OLD_NAME in all classes of objects
-(attributes, variables, dimensions, or groups). In other words,
-'ncrename' can change only the local names of objects, it cannot change
-the location of the object in the group hierarchy within the file.
-Hence using a full-path in NEW_NAME is redundant. The object name is
-the terminal path component of NEW_NAME and this object must already
-exist in the group specified by the OLD_NAME path.
-
- 'ncrename' is an exception to the normal NCO rule that the user will
-be interactively prompted before an existing file is changed, and that a
-temporary copy of an output file is constructed during the operation.
-If only INPUT-FILE is specified, then 'ncrename' changes object names in
-the INPUT-FILE in place without prompting and without creating a
-temporary copy of 'input-file'. This is because the renaming operation
-is considered reversible if the user makes a mistake. The NEW_NAME can
-easily be changed back to OLD_NAME by using 'ncrename' one more time.
-
- Note that renaming a dimension to the name of a dependent variable
-can be used to invert the relationship between an independent coordinate
-variable and a dependent variable. In this case, the named dependent
-variable must be one-dimensional and should have no missing values.
-Such a variable will become a coordinate variable.
-
- According to the 'netCDF User Guide', renaming objects in netCDF
-files does not incur the penalty of recopying the entire file when the
-NEW_NAME is shorter than the OLD_NAME. Thus 'ncrename' may run much
-faster (at least on netCDF3 files) if judicious use of header padding
-(*note Metadata Optimization::) was made when producing the INPUT-FILE.
-Similarly, using the '--hdr_pad' option with 'ncrename' helps ensure
-that future metadata changes to OUTPUT-FILE occur as swifly as possible.
-
-OPTIONS
-
-'-a OLD_NAME,NEW_NAME'
- Attribute renaming. The old and new names of the attribute are
- specified with '-a' (or '--attribute') by the associated OLD_NAME
- and NEW_NAME values. Global attributes are treated no differently
- than variable attributes. This option may be specified more than
- once. As mentioned above, all occurrences of the attribute of a
- given name will be renamed unless the '.' form is used, with one
- exception. To change the attribute name for a particular variable,
- specify the OLD_NAME in the format OLD_VAR_NAME at OLD_ATT_NAME. The
- '@' symbol delimits the variable from the attribute name. If the
- attribute is uniquely named (no other variables contain the
- attribute) then the OLD_VAR_NAME at OLD_ATT_NAME syntax is redundant.
- The OLD_VAR_NAME variable names 'global' and 'group' have special
- significance. They indicate that OLD_ATT_NM should only be renamed
- where it occurs as a global (i.e., root group) metadata attribute
- (for 'global'), or (for 'group') as _any_ group attribute, and not
- where it occurs as a variable attribute. The VAR_NAME at ATT_NAME
- syntax is accepted, though not required, for the NEW_NAME.
-
-'-d OLD_NAME,NEW_NAME'
- Dimension renaming. The old and new names of the dimension are
- specified with '-d' (or '--dmn', '--dimension') by the associated
- OLD_NAME and NEW_NAME values. This option may be specified more
- than once.
-
-'-g OLD_NAME,NEW_NAME'
- Group renaming. The old and new names of the group are specified
- with '-g' (or '--grp', '--group') by the associated OLD_NAME and
- NEW_NAME values. This option may be specified more than once.
- This functionality is only available in NCO version 4.3.7 (October,
- 2013) or later, and only when built on netCDF library version
- 4.3.1-rc1 (August, 2013) or later.
-
-'-v OLD_NAME,NEW_NAME'
- Variable renaming. The old and new names of the variable are
- specified with '-v' (or '--variable') by the associated OLD_NAME
- and NEW_NAME values. This option may be specified more than once.
-
-EXAMPLES
-
- Rename the variable 'p' to 'pressure' and 't' to 'temperature' in
-netCDF 'in.nc'. In this case 'p' must exist in the input file (or
-'ncrename' will abort), but the presence of 't' is optional:
- ncrename -v p,pressure -v .t,temperature in.nc
-
- Rename the attribute 'long_name' to 'largo_nombre' in the variable
-'u', and no other variables in netCDF 'in.nc'.
- ncrename -a u at long_name,largo_nombre in.nc
-
- Rename the group 'g8' to 'g20' in netCDF4 file 'in_grp.nc':
- ncrename -g g8,g20 in_grp.nc
-
- Rename the variable '/g1/lon' to 'longitude' in netCDF4 'in_grp.nc':
- ncrename -v /g1/lon,longitude in_grp.nc
- ncrename -v /g1/lon,/g1/longitude in_grp.nc # Alternate
-
- 'ncrename' does not automatically attach dimensions to variables of
-the same name. This is done to make renaming an easy way to change
-whether a variable is a coordinate. If you want to rename a coordinate
-variable so that it remains a coordinate variable, you must separately
-rename both the dimension and the variable:
- ncrename -d lon,longitude -v lon,longitude in.nc
- Unfortunately, the netCDF4 library had a longstanding bug (all
-versions until 4.3.1-rc5 released in December, 2013) that crashed NCO
-when performing this operation. Simultaneously renaming variables and
-dimensions in netCDF4 files with earlier versions of netCDF is
-impossible; it must instead be done in two separate 'ncrename'
-invocations (e.g., first rename the variable, then rename the dimension)
-to avoid triggering the libary bug.
-
- A related bug causes unintended side-effects with 'ncrename' also
-built with all versions of the netCDF4 library until 4.3.1-rc5 released
-in December, 2013): This bug caused renaming _either_ a dimension _or_
-its associated coordinate variable (not both, which would fail as above)
-in a netCDF4 file to inadvertently rename both:
- # Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.1-rc5
- ncks -O -h -m -M -4 -v lat_T42 ~/nco/data/in.nc ~/foo.nc
- ncrename -O -v lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames dimension
- ncrename -O -d lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames variable
- To avoid this faulty behavior, either build NCO with netCDF version
-4.3.1-rc5 or later, or convert the file to netCDF3 first, then rename as
-intended, then convert back. Unforunately while this bug and the
-related coordinate renaming bug were fixed in 4.3.1-rc5 (released in
-December, 2013), a new and related bug was discovered in October 2014.
-
- The final known netCDF bug that causes unintended side-effects with
-'ncrename' affects (at least) versions 4.3.1-4.3.2 of the netCDF4
-library (and snapshots at least until October, 2014): This bug corrupts
-values or renamed netCDF4 coordinate variables (i.e., variables with
-underlying dimensions of the same name) and other (non-coordinate)
-variables that include an underlying dimension that was renamed. In
-other words, _renaming_ coordinate variables and dimensions succeeds yet
-it corrupts the values contained by the affected array variables. This
-bug corrupts affected variables by replacing their values with the
-default '_FillValue' for that variable's type:
- # Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.3
- ncks -O -4 -C -M -v lat ~/nco/data/in.nc ~/bug.nc
- ncrename -O -v lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
- ncrename -O -d lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
- ncrename -O -d lat,tal -v lat,tal ~/bug.nc ~/foo.nc # Broken too
- ncks --cdl ~/foo.nc
- To avoid this faulty behavior, either build NCO with netCDF version
-4.3.3 (TBD) or later, or convert the file to netCDF3 first, then rename
-as intended, then convert back. This bug does not affect renaming of
-groups or of attributes.
-
- Create netCDF 'out.nc' identical to 'in.nc' except the attribute
-'_FillValue' is changed to 'missing_value', the attribute 'units' is
-changed to 'CGS_units' (but only in those variables which possess it),
-the attribute 'hieght' is changed to 'height' in the variable 'tpt', and
-in the variable 'prs_sfc', if it exists.
- ncrename -a _FillValue,missing_value -a .units,CGS_units \
- -a tpt at hieght,height -a prs_sfc at .hieght,height in.nc out.nc
- The presence and absence of the '.' and '@' features cause this
-command to execute successfully only if a number of conditions are met.
-All variables _must_ have a '_FillValue' attribute _and_ '_FillValue'
-must also be a global attribute. The 'units' attribute, on the other
-hand, will be renamed to 'CGS_units' wherever it is found but need not
-be present in the file at all (either as a global or a variable
-attribute). The variable 'tpt' must contain the 'hieght' attribute.
-The variable 'prs_sfc' need not exist, and need not contain the 'hieght'
-attribute.
-
- Rename the global or group attribute 'Convention' to 'Conventions'
- ncrename -a Convention,Conventions in.nc # Variable and group atts.
- ncrename -a .Convention,Conventions in.nc # Variable and group atts.
- ncrename -a @Convention,Conventions in.nc # Group atts. only
- ncrename -a @.Convention,Conventions in.nc # Group atts. only
- ncrename -a global at Convention,Conventions in.nc # Group atts. only
- ncrename -a .global at .Convention,Conventions in.nc # Group atts. only
- ncrename -a global at Convention,Conventions in.nc # Global atts. only
- ncrename -a .global at .Convention,Conventions in.nc # Global atts. only
- The examples without the '@' character attempt to change the
-attribute name in both Global or Group and variable attributes. The
-examples with the '@' character attempt to change only global and group
-'Convention' attributes, and leave unchanged any 'Convention' attributes
-attached directly to variables. Attributes prefixed with a period
-('.Convention') need not be present. Attributes not prefixed with a
-period ('Convention') must be present. Variables prefixed with a period
-('.' or '.global') need not be present. Variables not prefixed with a
-period ('global') must be present.
-
-4.12 'ncwa' netCDF Weighted Averager
-====================================
-
-SYNTAX
- ncwa [-3] [-4] [-6] [-7] [-A] [-a DIM[,...]] [-B MASK_COND] [-b] [-C] [-c]
- [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
- [-D DBG] [-d DIM,[MIN][,[MAX][,[STRIDE]]] [-F]
- [-G GPE_DSC] [-g GRP[,...]] [-h] [--hdr_pad NBR] [-I]
- [-L DFL_LVL] [-l PATH] [-M MASK_VAL] [-m MASK_VAR] [-N] [--no_tmp_fl]
- [-O] [-o OUTPUT-FILE] [-p PATH] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
- [-T MASK_COMP] [-t THR_NBR] [--unn] [-v VAR[,...]] [-w WEIGHT]
- [-X ...] [-x] [-y OP_TYP]
- INPUT-FILE [OUTPUT-FILE]
-
-DESCRIPTION
-
- 'ncwa' averages variables in a single file over arbitrary dimensions,
-with options to specify weights, masks, and normalization. *Note
-Statistics vs. Concatenation::, for a description of the distinctions
-between the various statistics tools and concatenators. The default
-behavior of 'ncwa' is to arithmetically average every numerical variable
-over all dimensions and to produce a scalar result for each.
-
- Averaged dimensions are, by default, eliminated as dimensions. Their
-corresponding coordinates, if any, are output as scalar variables. The
-'-b' switch (and its long option equivalents '--rdd' and
-'--retain-degenerate-dimensions') causes 'ncwa' to retain averaged
-dimensions as degenerate (size 1) dimensions. This maintains the
-association between a dimension (or coordinate) and variables after
-averaging and simplifies, for instance, later concatenation along the
-degenerate dimension.
-
- To average variables over only a subset of their dimensions, specify
-these dimensions in a comma-separated list following '-a', e.g., '-a
-time,lat,lon'. As with all arithmetic operators, the operation may be
-restricted to an arbitrary hypserslab by employing the '-d' option
-(*note Hyperslabs::). 'ncwa' also handles values matching the
-variable's '_FillValue' attribute correctly. Moreover, 'ncwa'
-understands how to manipulate user-specified weights, masks, and
-normalization options. With these options, 'ncwa' can compute
-sophisticated averages (and integrals) from the command line.
-
- MASK_VAR and WEIGHT, if specified, are broadcast to conform to the
-variables being averaged. The rank of variables is reduced by the
-number of dimensions which they are averaged over. Thus arrays which
-are one dimensional in the INPUT-FILE and are averaged by 'ncwa' appear
-in the OUTPUT-FILE as scalars. This allows the user to infer which
-dimensions may have been averaged. Note that that it is impossible for
-'ncwa' to make make a WEIGHT or MASK_VAR of rank W conform to a VAR of
-rank V if W > V. This situation often arises when coordinate variables
-(which, by definition, are one dimensional) are weighted and averaged.
-'ncwa' assumes you know this is impossible and so 'ncwa' does not
-attempt to broadcast WEIGHT or MASK_VAR to conform to VAR in this case,
-nor does 'ncwa' print a warning message telling you this, because it is
-so common. Specifying DBG > 2 does cause 'ncwa' to emit warnings in
-these situations, however.
-
- Non-coordinate variables are always masked and weighted if specified.
-Coordinate variables, however, may be treated specially. By default, an
-averaged coordinate variable, e.g., 'latitude', appears in OUTPUT-FILE
-averaged the same way as any other variable containing an averaged
-dimension. In other words, by default 'ncwa' weights and masks
-coordinate variables like all other variables. This design decision was
-intended to be helpful but for some applications it may be preferable
-not to weight or mask coordinate variables just like all other
-variables. Consider the following arguments to 'ncwa': '-a latitude -w
-lat_wgt -d latitude,0.,90.' where 'lat_wgt' is a weight in the
-'latitude' dimension. Since, by default 'ncwa' weights coordinate
-variables, the value of 'latitude' in the OUTPUT-FILE depends on the
-weights in LAT_WGT and is not likely to be 45.0, the midpoint latitude
-of the hyperslab. Option '-I' overrides this default behavior and
-causes 'ncwa' not to weight or mask coordinate variables (1). In the
-above case, this causes the value of 'latitude' in the OUTPUT-FILE to
-be 45.0, an appealing result. Thus, '-I' specifies simple arithmetic
-averages for the coordinate variables. In the case of latitude, '-I'
-specifies that you prefer to archive the arithmetic mean latitude of the
-averaged hyperslabs rather than the area-weighted mean latitude. (2).
-
- As explained in *Note Operation Types::, 'ncwa' _always averages_
-coordinate variables regardless of the arithmetic operation type
-performed on the non-coordinate variables. This is independent of the
-setting of the '-I' option. The mathematical definition of operations
-involving rank reduction is given above (*note Operation Types::).
-
- ---------- Footnotes ----------
-
- (1) The default behavior of ('-I') changed on 19981201--before this
-date the default was not to weight or mask coordinate variables.
-
- (2) If 'lat_wgt' contains Gaussian weights then the value of
-'latitude' in the OUTPUT-FILE will be the area-weighted centroid of the
-hyperslab. For the example given, this is about 30 degrees.
-
-4.12.1 Mask condition
----------------------
-
-The mask condition has the syntax MASK_VAR MASK_COMP MASK_VAL. The
-preferred method to specify the mask condition is in one string with the
-'-B' or '--mask_condition' switches. The older method is to use the
-three switches '-m', '-T', and '-M' to specify the MASK_VAR, MASK_COMP,
-and MASK_VAL, respectively. (1). The MASK_CONDITION string is
-automatically parsed into its three constituents MASK_VAR, MASK_COMP,
-and MASK_VAL.
-
- Here MASK_VAR is the name of the masking variable (specified with
-'-m', '--mask-variable', '--mask_variable', '--msk_nm', or '--msk_var').
-The truth MASK_COMP argument (specified with '-T', '--mask_comparator',
-'--msk_cmp_typ', or '--op_rlt' may be any one of the six arithmetic
-comparators: 'eq', 'ne', 'gt', 'lt', 'ge', 'le'. These are the
-Fortran-style character abbreviations for the logical comparisons ==,
-!=, >, <, >=, <=. The mask comparator defaults to 'eq' (equality). The
-MASK_VAL argument to '-M' (or '--mask-value', or '--msk_val') is the
-right hand side of the "mask condition". Thus for the I'th element of
-the hyperslab to be averaged, the mask condition is mask(i) MASK_COMP
-MASK_VAL.
-
- ---------- Footnotes ----------
-
- (1) The three switches '-m', '-T', and '-M' are maintained for
-backward compatibility and may be deprecated in the future. It is
-safest to write scripts using '--mask_condition'.
-
-4.12.2 Normalization and Integration
-------------------------------------
-
-'ncwa' has one switch which controls the normalization of the averages
-appearing in the OUTPUT-FILE. Short option '-N' (or long options
-'--nmr' or '--numerator') prevents 'ncwa' from dividing the weighted sum
-of the variable (the numerator in the averaging expression) by the
-weighted sum of the weights (the denominator in the averaging
-expression). Thus '-N' tells 'ncwa' to return just the numerator of the
-arithmetic expression defining the operation (*note Operation Types::).
-
- With this normalization option, 'ncwa' can integrate variables.
-Averages are first computed as sums, and then normalized to obtain the
-average. The original sum (i.e., the numerator of the expression in
-*note Operation Types::) is output if default normalization is turned
-off (with '-N'). This sum is the integral (not the average) over the
-specified (with '-a', or all, if none are specified) dimensions. The
-weighting variable, if specified (with '-w'), plays the role of the
-differential increment and thus permits more sophisticated integrals
-(i.e., weighted sums) to be output. For example, consider the variable
-'lev' where LEV = [100,500,1000] weighted by the weight 'lev_wgt' where
-LEV_WGT = [10,2,1]. The vertical integral of 'lev', weighted by
-'lev_wgt', is the dot product of LEV and LEV_WGT. That this is is 3000.0
-can be seen by inspection and verified with the integration command
- ncwa -N -a lev -v lev -w lev_wgt in.nc foo.nc;ncks foo.nc
-
-EXAMPLES
-
- Given file '85_0112.nc':
- netcdf 85_0112 {
- dimensions:
- lat = 64 ;
- lev = 18 ;
- lon = 128 ;
- time = UNLIMITED ; // (12 currently)
- variables:
- float lat(lat) ;
- float lev(lev) ;
- float lon(lon) ;
- float time(time) ;
- float scalar_var ;
- float three_dmn_var(lat, lev, lon) ;
- float two_dmn_var(lat, lev) ;
- float mask(lat, lon) ;
- float gw(lat) ;
- }
-
- Average all variables in 'in.nc' over all dimensions and store
-results in 'out.nc':
- ncwa in.nc out.nc
-All variables in 'in.nc' are reduced to scalars in 'out.nc' since 'ncwa'
-averages over all dimensions unless otherwise specified (with '-a').
-
- Store the zonal (longitudinal) mean of 'in.nc' in 'out.nc':
- ncwa -a lon in.nc out1.nc
- ncwa -a lon -b in.nc out2.nc
-The first command turns 'lon' into a scalar and the second retains 'lon'
-as a degenerate dimension in all variables.
- % ncks -C -H -v lon out1.nc
- lon = 135
- % ncks -C -H -v lon out2.nc
- lon[0] = 135
- In either case the tally is simply the size of 'lon', i.e., 180 for
-the '85_0112.nc' file described by the sample header above.
-
- Compute the meridional (latitudinal) mean, with values weighted by
-the corresponding element of GW (1):
- ncwa -w gw -a lat in.nc out.nc
-Here the tally is simply the size of 'lat', or 64. The sum of the
-Gaussian weights is 2.0.
-
- Compute the area mean over the tropical Pacific:
- ncwa -w gw -a lat,lon -d lat,-20.,20. -d lon,120.,270. in.nc out.nc
-Here the tally is 64 times 128 = 8192.
-
- Compute the area-mean over the globe using only points for which ORO
-< 0.5 (2):
- ncwa -B 'ORO < 0.5' -w gw -a lat,lon in.nc out.nc
- ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon in.nc out.nc
-It is considerably simpler to specify the complete MASK_COND with the
-single string argument to '-B' than with the three separate switches
-'-m', '-T', and '-M' (3). If in doubt, enclose the MASK_COND within
-quotes since some of the comparators have special meanings to the shell.
-
- Assuming 70% of the gridpoints are maritime, then here the tally is
-0.70 times 8192 = 5734.
-
- Compute the global annual mean over the maritime tropical Pacific:
- ncwa -B 'ORO < 0.5' -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
- ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
- Further examples will use the one-switch specification of MASK_COND.
-
- Determine the total area of the maritime tropical Pacific, assuming
-the variable AREA contains the area of each gridcell
- ncwa -N -v area -B 'ORO < 0.5' -a lat,lon \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
- Weighting AREA (e.g., by GW) is not appropriate because AREA is
-_already_ area-weighted by definition. Thus the '-N' switch, or,
-equivalently, the '-y ttl' switch, correctly integrate the cell areas
-into a total regional area.
-
- Mask a file to contain _FILLVALUE everywhere except where THR_MIN <=
-MSK_VAR <= THR_MAX:
- # Set masking variable and its scalar thresholds
- export msk_var='three_dmn_var_dbl' # Masking variable
- export thr_max='20' # Maximum allowed value
- export thr_min='10' # Minimum allowed value
- ncecat -O in.nc out.nc # Wrap out.nc in degenerate "record" dimension
- ncwa -O -a record -B "${msk_var} <= ${thr_max}" out.nc out.nc
- ncecat -O out.nc out.nc # Wrap out.nc in degenerate "record" dimension
- ncwa -O -a record -B "${msk_var} >= ${thr_min}" out.nc out.nc
- After the first use of 'ncwa', 'out.nc' contains _FILLVALUE where
-'${msk_var} >= ${thr_max}'. The process is then repeated on the
-remaining data to filter out points where '${msk_var} <= ${thr_min}'.
-The resulting 'out.nc' contains valid data only where THR_MIN <= MSK_VAR
-<= THR_MAX.
-
- ---------- Footnotes ----------
-
- (1) 'gw' stands for "Gaussian weight" in many climate models.
-
- (2) 'ORO' stands for "Orography" in some climate models and in those
-models ORO < 0.5 selects ocean gridpoints.
-
- (3) Unfortunately the '-B' and '--mask_condition' options are
-unsupported on Windows (with the MVS compiler), which lacks a free,
-standard parser and lexer.
-
-5 Contributing
-**************
-
-We welcome contributions from anyone. The project homepage at
-<https://sf.net/projects/nco> contains more information on how to
-contribute.
-
- Financial contributions to NCO development may be made through PayPal
-(https://www.paypal.com/xclick/business=zender%40uci.edu&item_name=NCO+development&item_number=nco_dnt_dvl&no_note=1&tax=0¤cy_code=USD).
-NCO has been shared for over 10 years yet only two users have
-contributed any money to the developers (1). So you could be the third!
-
- ---------- Footnotes ----------
-
- (1) Happy users have sent me a few gifts, though. This includes a
-box of imported chocolate. Mmm. Appreciation and gifts are definitely
-better than money. Naturally, I'm too lazy to split and send gifts to
-the other developers. However, unlike some NCO developers, I have a
-steady "real job". My intent is to split monetary donations among the
-active developers and to send them their shares via PayPal.
-
-5.1 Contributors
-================
-
-NCO would not exist without the dedicated efforts of the remarkable
-software engineers who conceive, develop, and maintain netCDF, UDUnits,
-and OPeNDAP. Since 1995 NCO has received support from, I believe, the
-entire staff of all these projects, including Russ Rew, John Caron,
-Glenn Davis, Steve Emmerson, James Gallagher, Ed Hartnett, and Dennis
-Heimbigner. In addition to their roles in maintaining the software
-stack on which NCO perches, Yertl-like, some of these gentlemen have
-advised or contributed to NCO specifically. That support is
-acknowledged separately below.
-
- The primary contributors to NCO development have been:
-Charlie Zender
- All concept, design and implementation from 1995-2000. Since then
- autotools, bug-squashing, CDL, chunking, documentation, anchoring,
- recursion, GPE, packing, NCO library redesign, 'ncap2' features,
- 'ncbo', 'ncpdq', SMP threading and MPI parallelization, netCDF4
- integration, external funding, project management, science
- research, releases.
-Henry Butowsky
- Non-linear operations and 'min()', 'max()', 'total()' support in
- 'ncra' and 'ncwa'. Type conversion for arithmetic. Migration to
- netCDF3 API. 'ncap2' parser, lexer, GSL-support, and I/O.
- Multislabbing algorithm. Variable wildcarding. Numerous hacks.
- 'ncap2' language.
-Rorik Peterson
- Original autotools build support. Long command-line options.
- Original UDUnits support. Debianization. Numerous bug-fixes.
-Joe Hamman
- Python bindings (NCOpy).
-Daniel Wang
- Script Workflow Analysis for MultiProcessing (SWAMP). RPM support.
-Harry Mangalam
- Benchmarking. OPeNDAP configuration.
-Pedro Vicente
- Windows Visual Studio support. netCDF4 groups.
-Russ Rew
- Advice on NCO structural algorithms
-Brian Mays
- Original packaging for Debian GNU/Linux, 'nroff' man pages.
-George Shapovalov
- Packaging for Gentoo GNU/Linux.
-Bill Kocik
- Memory management.
-Len Makin
- NEC SX architecture support.
-Jim Edwards
- AIX architecture support.
-Juliana Rew
- Compatibility with large PIDs.
-Karen Schuchardt
- Auxiliary coordinate support.
-Gayathri Venkitachalam
- MPI implementation.
-Scott Capps
- Large work-load testing
-Peter Campbell, Martin Dix, Mark Flanner, Markus Liebig, Keith Lindsay, Mike Page, Martin Schmidt, Michael Schulz, Lori Sentman, Rich Signell, Gary Strand, George White Andrew Wittenberg, Remik Ziemlinski
- Excellent bug reports and feature requests.
-Daniel Baumann, Nick Bower, Luk Claebs, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela
- Debian packaging
-Patrice Dumas, Ed Hill, Orion Poplawski
- RedHat packaging
-George Shapavalov, Patrick Kursawe
- Gentoo packaging
-Filipe Fernandes
- OpenSuse packaging
-Takeshi Enomoto, Alexander Hansen
- Mac OS packaging
-Eric Blake
- Autoconf/M4 help
-Gavin Burris, Kyle Wilcox
- RHEL and CentOS build scripts and bug reports.
-Andrea Cimatoribus
- NCO Spiral Logo
-Martin Otte, Etienne Tourigny
- Single bug reports and fixes
-Wenshan Wang
- CMIP5 and MODIS processing documentation.
- Please let me know if your name was omitted!
-
-5.2 Citation
-============
-
-The recommended citations for NCO software are
- Zender, C. S. (2008), Analysis of Self-describing Gridded Geoscience
- Data with netCDF Operators (NCO), Environ. Modell. Softw., 23(10),
- 1338-1342, doi:10.1016/j.envsoft.2008.03.004.
-
- Zender, C. S. (2014), netCDF Operator (NCO) User Guide, Version 4.4.3,
- http://nco.sf.net/nco.pdf.
- Use the former when referring to overall design, purpose, and
-optimization of NCO, and use the latter when referring to specific
-features and/or the User Guide itself.
-
- Additional information on citing NCO is in the User Guide at
-<http://nco.sf.net#ctt>. A complete list of NCO publications and
-presentations is at <http://nco.sf.net#pub>. This list links to the
-full papers and seminars themselves.
-
-5.3 Proposals for Institutional Funding
-=======================================
-
-NSF has funded a project (http://nco.sf.net#prp_sei) to improve
-Distributed Data Reduction & Analysis (DDRA) by evolving NCO into a
-suite of Scientific Data Operators called SDO. The two main components
-of this project are NCO parallelism (OpenMP, MPI) and Server-Side DDRA
-(SSDDRA) implemented through extensions to OPeNDAP and netCDF4. This
-project will dramatically reduce bandwidth usage for NCO DDRA.
-
- With this first NCO proposal funded, the content of the next NCO
-proposal is clear. We are interested in obtaining NASA support for
-HDF-specific enhancements to NCO. We plan to submit a proposal to the
-next suitable NASA NRA or NSF opportunity.
-
- We are considering other interesting ideas for still more proposals.
-Please contact us if you wish to be involved with any future NCO-related
-proposals. Comments on the proposals and letters of support are also
-very welcome.
-
-6 Quick Start
-*************
-
-Simple examples in Bash shell scripts showing how to average data with
-different file structures. Here we include monthly, seasonal and annual
-average with daily or monthly data in either one file or multiple files.
-
-6.1 Daily data in one file
-==========================
-
-Suppose we have daily data from Jan 1st, 1990 to Dec. 31, 2005 in the
-file of 'in.nc' with the record dimension as 'time'.
-
-*Monthly average:*
- for yyyy in {1990..2005}; do # Loop over years
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- # Average specific month yyyy-mm
- ncra -O -d time,"${yyyy}-${mm}-01","${yyyy}-${mm}-31" \
- in.nc in_${yyyy}${mm}.nc
- done
- done
-
- # Concatenate monthly files together
- ncrcat -O in_??????.nc out.nc
-
-*Annual average:*
- for yyyy in {1990..2005}; do # Loop over years
- ncra -O -d time,"${yyyy}-01-01","${yyyy}-12-31" in.nc in_${yyyy}.nc
- done
-
- # Concatenate annual files together
- ncrcat -O in_????.nc out.nc
- The '-O' switch means to overwrite the pre-existing files (*note
-Batch Mode::). The '-d' option is to specify the range of hyperslabs
-(*note Hyperslabs::). There are detailed instructions on 'ncra' (*note
-ncra netCDF Record Averager:: and 'ncrcat' (*note ncrcat netCDF Record
-Concatenator::). NCO supports UDUnits so that we can use readable dates
-as time dimension (*note UDUnits Support::).
-
-6.2 Monthly data in one file
-============================
-
-Inside the input file 'in.nc', the record dimension 'time' is from Jan
-1990 to Dec 2005.
-
-*Seasonal average (e.g., DJF):*
- ncra -O --mro -d time,"1990-12-01",,12,3 in.nc out.nc
-
-*Annual average:*
- ncra -O --mro -d time,,,12,12 in.nc out.nc
- Here we use the subcycle feature (i.e., the number after the fourth
-comma: '3' in the seasonal example and the second '12' in the annual
-example) to retrieve groups of records separated by regular intervals
-(*note Subcycle::). The option '--mro' switches 'ncra' to produce a
-Multi-Record Output instead of a single-record output. For example,
-assume SND is a 3D array with dimensions 'time' * 'latitude' *
-'longitude' and 'time' includes every month from Jan. 1990 to Dec.
-2005, 192 months as total, which are 16 years. Let's look at the
-following two command lines.
- ncra --mro -v snd -d time,"1990-12-01",,12,3 in.nc out_mro.nc
- ncra -v snd -d time,"1990-12-01",,12,3 in.nc out_sro.nc
- In the first output file, 'out_mro.nc', SND is still a 3D array with
-dimensions 'time' * 'latitude' * 'longitude', but the length of 'time'
-now is 16, meaning 16 winters. In the second output file, 'out_sro.nc',
-the length of 'time' is only 1. It is now the average of all the 16
-winters.
-
- when using '-d DIM,min[,max]' to specify the hyperslabs, you can
-leave it blank if you want to include the minimum or the maximum of the
-data, like we did above.
-
-6.3 One time point one file
-===========================
-
-This means if you have daily data of 30 days, there will be 30 data
-files. Or if you have monthly data of 12 months, there will be 12 data
-files. Dealing with this kind of files, you need to specify the file
-names in shell scripts and pass them to NCO operators. For example,
-your daily data files may look like 'snd_19900101.nc',
-'snd_19900102.nc', 'snd_19900103.nc' ... If you want to know the
-monthly average of Jan 1990, you can write like,
- ncra -O snd_199001??.nc out.nc
- You might want to use loop if you need the average of each month.
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- ncra -O snd_????${mm}??.nc out_${mm}.nc
- done
-
-6.4 Multiple files with multiple time points
-============================================
-
-Similar as the last one, it's more about shell scripts. Suppose you
-have daily data with one month of them in one data file. The monthly
-average is simply to apply 'ncra' on the specific data file. And for
-seasonal averages, you can specify the three months by shell scripts.
-
-7 CMIP5 Example
-***************
-
-The fifth phase of the Coupled Model Intercomparison Project (CMIP5
-(http://cmip-pcmdi.llnl.gov/cmip5/index.html?submenuheader=0)) provides
-a multi-model framework for comparing the mechanisms and responses of
-climate models from around the world. However, it is a tremendous
-workload to retrieve a single climate statistic from all these models,
-each of which includes several ensemble members. Not only that, it is
-too often a tedious process that impedes new research and hypothesis
-testing. Our NASA ACCESS 2011 project simplified and accelerated this
-process.
-
- Traditional geoscience data analysis requires users to work with
-numerous flat (data in one level or namespace) files. In that paradigm
-instruments or models produce, and then repositories archive and
-distribute, and then researchers request and analyze, collections of
-flat files. NCO works well with that paradigm, yet it also embodies the
-necessary algorithms to transition geoscience data analysis from relying
-solely on traditional (or "flat") datasets to allowing newer
-hierarchical (or "nested") datasets.
-
- Hierarchical datasets support and enable combining all datastreams
-that meet user-specified criteria into a single or small number of files
-that hold _all_ the science-relevant data. NCO (and no other software
-to our knowledge) exploits this capability now. Data and metadata may
-be aggregated into and analyzed in hierarchical structures. We call the
-resulting data storage, distribution, and analysis paradigm
-Group-Oriented Data Analysis and Distribution (GODAD). GODAD lets the
-scientific question organize the data, not the _ad hoc_ granularity of
-all relevant datasets. This chapter illustrates GODAD techniques
-applied to analysis of the CMIP5 dataset.
-
- To begin, we document below a prototypical example of CMIP5 analysis
-and evaluation using traditional NCO commands on netCDF3-format model
-and HDF-EOS format observational (NASA MODIS satellite instrument)
-datasets. These examples complement the NCO User Guide by detailing
-in-depth data analysis in a frequently encountered "real world" context.
-Graphical representations of the results (NCL scripts available upon
-request) are provided to illustrate physical meaning of the analysis.
-Since NCO can process hierarchical datasets, i.e., datasets stored with
-netCDF4 groups, we present sample scripts illustrating group-based
-processing as well.
-
-7.1 Combine Files
-=================
-
-Sometimes, the data of one ensemble member will be stored in several
-files to reduce single file size. It is more convenient to concatenate
-these files into a single timeseries, and the following script
-illustrates how. Key steps include:
- 1. Obtain number and names (or partial names) of files in a directory
- 2. Concatenate files along the record dimension (usually time) using
- 'ncrcat' (*note ncrcat netCDF Record Concatenator::).
- #!/bin/bash # shell type
- shopt -s extglob # enable extended globbing
-
- #===========================================================================
- # Some of the models cut one ensemble member into several files,
- # which include data of different time periods.
- # We'd better concatenate them into one at the beginning so that
- # we won't have to think about which files we need if we want
- # to retrieve a specific time period later.
- #
- # Method:
- # - Make sure 'time' is the record dimension (i.e., left-most)
- # - ncrcat
- #
- # Input files like:
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-190012.nc
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_190101-200512.nc
- #
- # Output files like:
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Combine-Files
- #
- # Execute this script: bash cmb_fl.sh
- #===========================================================================
-
- drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
-
- var=( 'snc' 'snd' ) # Variables
- rlm='LImon' # Realm
- xpt=( 'historical' ) # Experiment ( could be more )
-
- for var_id in {0..1}; do # Loop over two variables
- # Names of all the models (ls [get file names];
- # cut [get model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
- # Number of models (echo [print contents]; wc [count])
- mdl_nbr=$( echo ${mdl_set} | wc -w )
- echo "=============================="
- echo "There are" ${mdl_nbr} "models for" ${var[var_id]}.
-
- for mdl in ${mdl_set}; do # Loop over models
- # Names of all the ensemble members
- nsm_set=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc | \
- cut -d '_' -f 5 | sort | uniq -c | awk '{print $2}' )
- # Number of ensemble members in each model
- nsm_nbr=$( echo ${nsm_set} | wc -w )
- echo "------------------------------"
- echo "Model" ${mdl} "includes" ${nsm_nbr} "ensemble member(s):"
- echo ${nsm_set}"."
-
- for nsm in ${nsm_set}; do # Loop over ensemble members
- # Number of files in this ensemble member
- fl_nbr=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc \
- | wc -w )
-
- # If there is only 1 file, continue to next loop
- if [ ${fl_nbr} -le 1 ]
- then
- echo "There is only 1 file in" ${nsm}.
- continue
- fi
-
- echo "There are" ${fl_nbr} "files in" ${nsm}.
-
- # Starting date of data
- # (sed [the name of the first file includes the starting date])
- yyyymm_str=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc\
- | sed -n '1p' | cut -d '_' -f 6 | cut -d '-' -f 1 )
- # Ending date of data
- # (sed [the name of the last file includes the ending date])
- yyyymm_end=$( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc\
- | sed -n "${fl_nbr}p" | cut -d '_' -f 6 | cut -d '-' -f 2 )
-
- # Concatenate one ensemble member files
- # into one along the record dimension (now is time)
- ncrcat -O ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_*.nc \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- ${nsm}_${yyyymm_str}-${yyyymm_end}
-
- # Remove useless files
- rm ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_${nsm}_\
- !(${yyyymm_str}-${yyyymm_end})
- done
- done
- done
-
- CMIP5 model data downloaded from the Earth System Grid Federation
-(ESGF (http://pcmdi9.llnl.gov/esgf-web-fe/)) does not contain group
-features yet. Therefore users must aggregate flat files into
-hierarchical ones themselves. The following script shows how. Each
-dataset becomes a group in the output file. There can be several levels
-of groups. In this example, we employ two experiments ("scenarios") as
-the top-level. The second-level comprises different models (e.g.,
-CCSM4, CESM1-BGC). Many models are run multiple times with slight
-perturbed initial conditions to produce an ensemble of realizations.
-These ensemble members comprise the third level of the hierarchy. The
-script selects two variables, SNC and SND (snow cover and snow depth).
- #!/bin/bash
- #
- #============================================================
- # Aggregate models to one group file
- #
- # Method:
- # - Create files with groups by ncecat --gag
- # - Append groups level by level using ncks
- #
- # Input files like:
- # snc_LImon_CCSM4_historical_r1i1p1_199001-200512.nc
- # snd_LImon_CESM1-BGC_esmHistorical_r1i1p1_199001-200512.nc
- #
- # Output files like:
- # sn_LImon_199001-200512.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Combine-Files
- #
- # Execute this script: bash cmb_fl_grp.sh
- #============================================================
-
- # Directories
- drc_in='../data/'
- drc_out='../data/grp/'
-
- # Constants
- rlm='LImon' # Realm: LandIce; Time frequency: monthly
- tms='200001-200512' # Timeseries
- flt='nc' # File Type
-
- # Geographical weights
- # Can be skipped when ncap2 works on group data
- # Loop over all snc files
- for fn in $( ls ${drc_in}snc_${rlm}_*_${tms}.${flt} ); do
- ncap2 -O -s \
- 'gw = float(cos(lat*3.1416/180.)); gw at long_name="geographical weight";'\
- ${fn} ${fn}
- done
-
- var=( 'snc' 'snd' )
- xpt=( 'esmHistorical' 'historical' )
- mdl=( 'CCSM4' 'CESM1-BGC' 'CESM1-CAM5' )
-
- for i in {0..1}; do # Loop over variables
- for j in {0..1}; do # Loop over experiments
- for k in {0..2}; do # Loop over models
- ncecat -O --glb_mtd_spp -G ${xpt[j]}/${mdl[k]}/${mdl[k]}_ \
- ${drc_in}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_*_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_all-nsm_${tms}.${flt}
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[k]}_${xpt[j]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[j]}_all-nsm_${tms}.${flt}
- done # Loop done: models
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[j]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt}
- done # Loop done: experiments
- ncks -A \
- ${drc_out}${var[i]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt} \
- ${drc_out}${var[0]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt}
- done # Loop done: variables
-
- # Rename output file
- mv ${drc_out}${var[0]}_${rlm}_${mdl[0]}_${xpt[0]}_all-nsm_${tms}.${flt} \
- ${drc_out}sn_${rlm}_all-mdl_all-xpt_all-nsm_${tms}.${flt}
- # Remove temporary files
- rm ${drc_out}sn?_${rlm}*.nc
-
- #- Rename Group:
- # E.g., file snc_LImon_CESM1-CAM5_historical_r1i1p1_199001-200512.nc
- # is now group /historical/CESM1-CAM5/CESM1-CAM5_00.
- # You can rename it to /historical/CESM1-CAM5/r1i1p1 to make more sense.
- # Note: You don't need to write the full path of the new name.
- ncrename -g ${xpt}/${mdl}/${mdl}_00,r1i1p1 \
- ${drc_out}${var}_${rlm}_${mdl}_all-nsm_${tms}.${flt}
-
- #------------------------------------------------------------
- # Output file structure
- #------------------------------------------------------------
- # esmHistorical
- # {
- # CESM1-BGC
- # {
- # CESM1-BGC_00
- # {
- # snc(time, lat, lon)
- # snd(time, lat, lon)
- # }
- # }
- # }
- # historical
- # {
- # CCSM4
- # {
- # CCSM4_00
- # {
- # snc(time, lat, lon)
- # snd(time, lat, lon)
- # }
- # CCSM4_01
- # {
- # snc(time, lat, lon)
- # snd(time, lat, lon)
- # }
- # CCSM4_02 { ... }
- # CCSM4_03 { ... }
- # CCSM4_04 { ... }
- # }
- # CESM1-BGC
- # {
- # CESM1-BGC_00 { ... }
- # }
- # CESM1-CAM5
- # {
- # r1i1p1 { ... }
- # CESM1-CAM5_01 { ... }
- # CESM1-CAM5_02 { ... }
- # }
- # }
-
-7.2 Global Distribution of Long-term Average
-============================================
-
-Global Distribution of Long-term Average.
-Figure 7.1: Global Distribution of Long-term Average.
-This section illustrates how to calculate the global distribution of
-long-term average (*note Figure 7.1: fgr:glb.) with either flat files or
-group file (http://nco.sourceforge.net/nco.html#index-groups). Key
-steps include:
- 1. Average ensemble members of each model using 'nces' (*note nces
- netCDF Ensemble Statistics::)
- 2. Average the record dimension using 'ncra' (*note ncra netCDF Record
- Averager::)
- 3. Store results of each model as a distinct group in a single output
- file using 'ncecat' (*note ncrcat netCDF Record Concatenator::)
- with the '--gag' option
- The first example shows how to process flat files.
- #!/bin/bash
-
- #===========================================================================
- # After cmb_fl.sh
- # Example: Long-term average of each model globally
- #
- # Input files like:
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
- #
- # Output files like:
- # /data/cmip5/output/snc/snc_LImon_all-mdl_historical_all-nsm_clm.nc
- #
- # Online:
- # http://nco.sourceforge.net/nco.html#Global-Distribution-of-Long_002dterm-Average
- #
- # Execute this script: bash glb_avg.sh
- #===========================================================================
-
- #---------------------------------------------------------------------------
- # Parameters
- drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
- drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
- var=( 'snc' 'snd' ) # Variables
- rlm='LImon' # Realm
- xpt=( 'historical' ) # Experiment ( could be more )
-
- fld_out=( 'snc/' 'snd/' ) # Folders of output files
- #---------------------------------------------------------------------------
-
- for var_id in {0..1}; do # Loop over two variables
- # Names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
- # Number of models (echo [print contents]; wc [count])
- mdl_num=$( echo ${mdl_set} | wc -w )
-
- for mdl in ${mdl_set}; do # Loop over models
- # Average all the ensemble members of each model
- # Use nces file ensembles mode: --nsm_fl
- nces --nsm_fl -O -4 -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9" \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}\
- _all-nsm_195601-200512.nc
-
- # Average along time
- ncra -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}\
- _all-nsm_195601-200512.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
-
- echo Model ${mdl} done!
- done
-
- # Remove temporary files
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}*historical*.nc
-
- # Store models as groups in the output file
- ncecat -O --gag ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- all-mdl_${xpt[0]}_all-nsm_clm.nc
-
- echo Var ${var[var_id]} done!
- done
-
- With the use of <group>, the above script will be shortened to
-ONE LINE.
- # Data from cmb_fl_grp.sh
- # ensemble averaging
- nces -O --nsm_grp --nsm_sfx='_avg' \
- sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc \
- sn_LImon_all-mdl_all-xpt_nsm-avg.nc
- The input file, 'sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc',
-produced by 'cmb_fl_grp.sh', includes all the ensemble members as
-groups. The option '--nsm_grp' denotes that we are using group
-ensembles mode (http://nco.sf.net/nco.html#nsm_grp) of 'nces', instead
-of file ensembles mode (http://nco.sf.net/nco.html#nsm_fl), '--nsm_fl'.
-The option '--nsm_sfx='_avg'' instructs 'nces' to store the output as a
-new child group '/[model]/[model name]_avg/var'; otherwise, the output
-will be stored directly in the parent group '/[model]/var'. In the
-final output file, 'sn_LImon_all-mdl_all-xpt_nsm-avg_tm-avg.nc',
-sub-groups with a suffix of 'avg' are the long-term averages of each
-model. One thing to notice is that for now, ensembles with only one
-ensemble member will be left untouched.
-
-7.3 Annual Average over Regions
-===============================
-
-Annual Average over Regions.
-Figure 7.2: Annual Average over Regions.
-This section illustrates how to calculate the annual average over
-specific regions (*note Figure 7.2: fgr:anl.). Key steps include:
- 1. Spatial average using 'ncap2' (*note ncap2 netCDF Arithmetic
- Processor::) and 'ncwa' (*note ncwa netCDF Weighted Averager::);
- 2. Change dimension order using 'ncpdq' (*note ncpdq netCDF Permute
- Dimensions Quickly::);
- 3. Annual average using 'ncra' (*note ncra netCDF Record Averager::);
- 4. Anomaly from long-term average using 'ncbo' (*note ncbo netCDF
- Binary Operator::);
- 5. Standard deviation using 'ncbo' (*note ncbo netCDF Binary
- Operator::) and 'nces' (*note nces netCDF Ensemble Statistics::);
- 6. Rename variables using 'ncrename' (*note ncrename netCDF
- Renamer::);
- 7. Edit attributions using 'ncatted' (*note ncatted netCDF Attribute
- Editor::);
- 8. Linear regression using 'ncap2' (*note ncap2 netCDF Arithmetic
- Processor::);
- 9. Use 'ncap2' (*note ncap2 netCDF Arithmetic Processor::) with nco
- script file (i.e., '.nco' file);
- 10. Move variables around using 'ncks' (*note ncks netCDF Kitchen
- Sink::).
- *Flat files example*
- #!/bin/bash
- # Includes gsl_rgr.nco
-
- #===========================================================================
- # After cmb_fl.sh
- # Example: Annual trend of each model over Greenland and Tibet
- # ( time- and spatial-average, standard deviation,
- # anomaly and linear regression)
- #
- # Input files:
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
- #
- # Output files:
- # /data/cmip5/outout/snc/snc_LImon_all-mdl_historical_all-nsm_annual.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
- #
- # Execute this script: bash ann_avg.sh
- #===========================================================================
-
- #---------------------------------------------------------------------------
- # Parameters
- drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
- drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
- var=( 'snc' 'snd' ) # Variables
- rlm='LImon' # Realm
- xpt=( 'historical' ) # Experiment ( could be more )
-
- fld_out=( 'snc/' 'snd/' ) # Folders of output files
- # ------------------------------------------------------------
-
- for var_id in {0..1}; do # Loop over two variables
- # Names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
-
- for mdl in ${mdl_set}; do # Loop over models
- # Loop over ensemble members
- for fn in $( ls ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc ); do
- pfx=$( echo ${fn} | cut -d'/' -f6 | cut -d'_' -f1-5 )
-
- # Two regions
- # Geographical weight
- ncap2 -O -s 'gw = cos(lat*3.1415926/180.); gw at long_name="geographical weight"\
- ;gw at units="ratio"' ${fn} ${drc_out}${fld_out[var_id]}${pfx}_gw.nc
- # Greenland
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_1.nc
- # Tibet
- ncwa -O -w gw -d lat,30.0,40.0 -d lon,80.0,100.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_2.nc
-
- # Aggregate 2 regions together
- ncecat -O -u rgn ${drc_out}${fld_out[var_id]}${pfx}_gw_?.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc
-
- # Change dimensions order
- ncpdq -O -a time,rgn ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc
-
- # Remove temporary files (optional)
- rm ${drc_out}${fld_out[var_id]}${pfx}_gw_?.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_gw.nc
-
- # Annual average (use the feature of 'Duration')
- ncra -O --mro -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9",12,12 \
- ${drc_out}${fld_out[var_id]}${pfx}_gw_rgn4.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc
-
- # Anomaly
- # Long-term average
- ncwa -O -a time ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_clm.nc
- # Subtract long-term average
- ncbo -O --op_typ=- ${drc_out}${fld_out[var_id]}${pfx}_yrly.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_clm.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_anm.nc
- done
-
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*_yrly.nc
-
- # Average over all the ensemble members
- ncea -O -4 ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_*_anm.nc ${drc_out}${fld_out[var_id]}\
- ${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm_anm.nc
-
- # Standard deviation ------------------------------
- for fn in $( ls ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_*_anm.nc ); do
- pfx=$( echo ${fn} | cut -d'/' -f8 | cut -d'_' -f1-5 )
-
- # Difference between each ensemble member and the average of all members
- ncbo -O --op_typ=- ${fn} \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_anm.nc \
- ${drc_out}${fld_out[var_id]}${pfx}_dlt.nc
- done
-
- # RMS
- ncea -O -y rmssdn ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_*_dlt.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- # Rename variables
- ncrename -v ${var[var_id]},sdv \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- # Edit attributions
- ncatted -a standard_name,sdv,a,c,"_standard_deviation_over_ensemble" \
- -a long_name,sdv,a,c," Standard Deviation over Ensemble" \
- -a original_name,sdv,a,c," sdv" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc
- #------------------------------------------------------------
-
- # Linear regression -----------------------------------------
- #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
- # Have to change the name of variable in the commands file
- # of gsl_rgr.nco manually (gsl_rgr.nco is listed below)
- ncap2 -O -S gsl_rgr.nco \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_anm.nc ${drc_out}${fld_out[var_id]}${var[var_id]}\
- _${rlm}_${mdl}_${xpt[0]}_all-nsm_anm_rgr.nc
- #!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-
- # Get rid of temporary variables
- ncks -O -v c0,c1,pval,${var[var_id]},gw \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_anm_rgr.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
- #------------------------------------------------------------
-
- # Move the variable 'sdv' into the anomaly files (i.e., *anm.nc files)
- ncks -A -v sdv \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_sdv.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
- rm ${drc_out}${fld_out[var_id]}${var[var_id]}_*historical*
-
- echo Model ${mdl} done!
- done
-
- # Store models as groups in the output file
- ncecat -O --gag ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_all-mdl_${xpt[0]}_all-nsm_annual.nc
-
- echo Var ${var[var_id]} done!
- done
- *gsl_rgr.nco*
- // Linear Regression
- // Called by ann_avg.sh
- // Caution: make sure the variable name is
- // in agreement with the main script (now is 'snd')
- // Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
-
- // Declare variables
- *c0[$rgn]=0.; // Intercept
- *c1[$rgn]=0.; // Slope
- *sdv[$rgn]=0.; // Standard deviation
- *covxy[$rgn]=0.; // Covariance
- *x = double(time);
-
- for (*rgn_id=0;rgn_id<$rgn.size;rgn_id++) // Loop over regions
- {
- gsl_fit_linear(time,1,snd(:,rgn_id),1,$time.size, \
- &tc0, &tc1, &cov00, &cov01,&cov11,&sumsq); // Linear regression function
- c0(rgn_id) = tc0; // Output results
- c1(rgn_id) = tc1;
- covxy(rgn_id) = gsl_stats_covariance(time,1,\
- $time.size,double(snd(:,rgn_id)),1,$time.size); // Covariance function
- sdv(rgn_id) = gsl_stats_sd(snd(:,rgn_id), \
- 1, $time.size); // Standard deviation function
- }
-
- // P value------------------------------------------------------------
- *time_sdv = gsl_stats_sd(time, 1, $time.size);
- *r_value = covxy/(time_sdv*sdv);
- *t_value = r_value/sqrt((1-r_value^2)/($time.size-2));
- pval = abs(gsl_cdf_tdist_P(t_value, $time.size-2) - \
- gsl_cdf_tdist_P(-t_value, $time.size-2));
- //----------------------------------------------------------------
-
- // Write RAM variables to disk
- //------------------------------------------------------------
- // Usually NCO writes the outputs directly to disk
- // Using RAM variables, declared by *, will shorten running time
- // Output the final results using ram_write()
- //------------------------------------------------------------
- ram_write(c0);
- ram_write(c1);
-
- With the <group> feature, all the loops over experiments, models and
-ensemble members can be omitted. As we are working on implementing
-<group> feature in all NCO operators, some functions (e.g., regression
-and standard deviation over ensemble members) may have to wait until the
-new versions.
- #!/bin/bash
- #
- #============================================================
- # Group data output by cmb_fl_grp.sh
- # Annual trend of each model over Greenland and Tibet
- # Time- and spatial-average, standard deviation and anomaly
- # No regression yet (needs ncap2)
- #
- # Input files:
- # sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Annual-Average-over-Regions
- #
- # Execute this script: bash ann_avg_grp.sh
- #===========================================================================
- # Input and output directory
- drc='../data/grp/'
-
- # Constants
- pfx='sn_LImon_all-mdl_all-xpt_all-nsm'
- tms='200001-200512' # Time series
-
- # Greenland
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc}${pfx}_${tms}.nc \
- ${drc}${pfx}_${tms}_grl.nc
- # Tibet
- ncwa -O -w gw -d lat,30.0,40.0 -d lon,80.0,100.0 -a lat,lon \
- ${drc}${pfx}_${tms}.nc \
- ${drc}${pfx}_${tms}_tbt.nc
-
- # Aggregate 2 regions together
- ncecat -O -u rgn ${drc}${pfx}_${tms}_???.nc \
- ${drc}${pfx}_${tms}_rgn2.nc
-
- # Change dimensions order
- ncpdq -O -a time,rgn ${drc}${pfx}_${tms}_rgn2.nc \
- ${drc}${pfx}_${tms}_rgn2.nc
-
- # Remove temporary files (optional)
- rm ${drc}${pfx}_${tms}_???.nc
-
- #Annual average
- ncra -O --mro -d time,,,12,12 ${drc}${pfx}_${tms}_rgn2.nc \
- ${drc}${pfx}_${tms}_rgn2_ann.nc
-
- # Anomaly
- #------------------------------------------------------------
- # Long-term average
- ncwa -O -a time ${drc}${pfx}_${tms}_rgn2_ann.nc \
- ${drc}${pfx}_${tms}_rgn2_clm.nc
- # Subtract
- ncbo -O --op_typ=- ${drc}${pfx}_${tms}_rgn2_ann.nc \
- ${drc}${pfx}_${tms}_rgn2_clm.nc \
- ${drc}${pfx}_${tms}_rgn2_anm.nc
- #------------------------------------------------------------
-
- # Standard Deviation: inter-annual variability
- # RMS of the above anomaly
- ncra -O -y rmssdn ${drc}${pfx}_${tms}_rgn2_anm.nc \
- ${drc}${pfx}_${tms}_rgn2_stddev.nc
-
-7.4 Monthly Cycle
-=================
-
-Monthly Cycle.
-Figure 7.3: Monthly Cycle.
-This script illustrates how to calculate the monthly anomaly from the
-annual average (*note Figure 7.3: fgr:mon.). In order to keep only the
-monthly cycle, we will subtract the annual average of each year from the
-monthly data, instead of subtracting the long-term average. This is a
-little more complicated in coding since we need to loop over years.
-
- *Flat files example*
- #!/bin/bash
-
- #============================================================
- # After cmb_fl.sh
- # Example: Monthly cycle of each model in Greenland
- #
- # Input files:
- # /data/cmip5/snc_LImon_bcc-csm1-1_historical_r1i1p1_185001-200512.nc
- #
- # Output files:
- # /data/cmip5/snc/snc_LImon__all-mdl_historical_all-nsm_GN_mthly-anm.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Monthly-Cycle
- #
- # Execute this script: bash mcc.sh
- #============================================================
-
- #------------------------------------------------------------
- # Parameters
- drc_in='/home/wenshanw/data/cmip5/' # Directory of input files
- drc_out='/home/wenshanw/data/cmip5/output/' # Directory of output files
-
- var=( 'snc' 'snd' ) # Variables
- rlm='LImon' # Realm
- xpt=( 'historical' ) # Experiment ( could be more )
-
- fld_out=( 'snc/' 'snd/' ) # Folders of output files
- #------------------------------------------------------------
-
- for var_id in {0..1}; do # Loop over two variables
- # names of all models
- # (ls [get file names]; cut [get the part for model names];
- # sort; uniq [remove duplicates]; awk [print])
- mdl_set=$( ls ${drc_in}${var[var_id]}_${rlm}_*_${xpt[0]}_*.nc | \
- cut -d '_' -f 3 | sort | uniq -c | awk '{print $2}' )
-
- for mdl in ${mdl_set}; do ## Loop over models
- # Average all the ensemble members of each model
- ncea -O -4 -d time,"1956-01-01 00:00:0.0","2005-12-31 23:59:9.9" \
- ${drc_in}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc
-
- # Greenland
- # Geographical weight
- ncap2 -O -s \
- 'gw = cos(lat*3.1415926/180.); \
- gw at long_name="geographical weight";gw at units="ratio"' \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_all-nsm_GN.nc
-
- # Anomaly----------------------------------------
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- for yr in {1956..2005}; do # Loop over years
- # If January, calculate the annual average
- if [ ${moy} -eq 1 ]; then
- ncra -O -d time,"${yr}-01-01 00:00:0.0","${yr}-12-31 23:59:9.9" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN.nc ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN_${yr}.nc
- fi
-
- # The specific month
- ncks -O -d time,"${yr}-${mm}-01 00:00:0.0","${yr}-${mm}-31 23:59:9.9" \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- all-nsm_GN_${yr}${mm}.nc
- # Subtract the annual average from the monthly data
- ncbo -O --op_typ=- ${drc_out}${fld_out[var_id]}${var[var_id]}_\
- ${rlm}_${mdl}_${xpt[0]}_all-nsm_GN_${yr}${mm}.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_${xpt[0]}_\
- all-nsm_GN_${yr}.nc ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_\
- ${mdl}_${xpt[0]}_all-nsm_GN_${yr}${mm}_anm.nc
- done
-
- # Average over years
- ncra -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_????${mm}_anm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_${mm}_anm.nc
- done
- #--------------------------------------------------
-
- # Concatenate months together
- ncrcat -O ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_${mdl}_\
- ${xpt[0]}_all-nsm_GN_??_anm.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${mdl}.nc
-
- echo Model ${mdl} done!
- done
-
- rm -f ${drc_out}${fld_out[var_id]}${var[var_id]}*historical*
-
- # Store models as groups in the output file
- ncecat -O --gag -v ${var[var_id]} \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_*.nc \
- ${drc_out}${fld_out[var_id]}${var[var_id]}_${rlm}_all-mdl_\
- ${xpt[0]}_all-nsm_GN_mthly-anm.nc
-
- echo Var ${var[var_id]} done!
- done
- Using <group> feature and hyperslabs
-(http://nco.sourceforge.net/nco.html#Hyperslabs) of 'ncbo', the script
-will be shortened.
- #!/bin/bash
-
- #============================================================
- # Monthly cycle of each ensemble member in Greenland
- #
- # Input file from cmb_fl_grpsh
- # sn_LImon_all-mdl_all-xpt_all-nsm_199001-200512.nc
- # Online: http://nco.sourceforge.net/nco.html#Monthly-Cycle
- #
- # Execute this script in command line: bash mcc_grp.sh
- #============================================================
- # Input and output directory
- drc='../data/grp/'
-
- # Constants
- pfx='sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512'
-
- # Greenland
- ncwa -O -w gw -d lat,60.0,75.0 -d lon,300.0,340.0 -a lat,lon \
- ${drc}${pfx}.nc ${drc}${pfx}_grl.nc
-
- # Anomaly from annual average of each year
- for yyyy in {2000..2005}; do
- # Annual average
- ncwa -O -d time,"${yyyy}-01-01","${yyyy}-12-31" \
- ${drc}${pfx}_grl.nc ${drc}${pfx}_grl_${yyyy}.nc
-
- # Anomaly
- ncbo -O --op_typ=- -d time,"${yyyy}-01-01","${yyyy}-12-31" \
- ${drc}${pfx}_grl.nc ${drc}${pfx}_grl_${yyyy}.nc \
- ${drc}${pfx}_grl_${yyyy}_anm.nc
- done
-
- # Monthly cycle
- for moy in {1..12}; do
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
- ncra -O -d time,"2000-${mm}-01",,12 \
- ${drc}${pfx}_grl_????_anm.nc ${drc}${pfx}_grl_${mm}_anm.nc
- done
- # Concatenate 12 months together
- ncrcat -O ${drc}${pfx}_grl_??_anm.nc \
- ${drc}${pfx}_grl_mth_anm.nc
-
-7.5 Regrid MODIS Data
-=====================
-
-In order to compare the results between MODIS and CMIP5 models, one
-usually regrids one or both datasets so that the spatial resolutions
-match. Here, the script illustrates how to regrid MODIS data. Key
-steps include:
- 1. Regrid using bilinear interpolation (*note Bilinear
- interpolation::)
- 2. Rename variables, dimensions and attributions using 'ncrename'
- (*note ncrename netCDF Renamer::).
- *Main Script*
- #!/bin/bash
- # include bi_interp.nco
-
- #===========================================================================
- # Example for
- # - regrid (using bi_interp.nco): the spatial resolution of MODIS data
- # is much finer than those of CMIP5 models. In order to compare
- # the two, we can regrid MODIS data to comform to CMIP5.
- #
- # Input files (Note: the .hdf files downloaded have to be converted to .nc at
- # the present):
- # /modis/mcd43c3/MCD43C3.A2000049.005.2006271205532.nc
- #
- # Output files:
- # /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Regrid-MODIS-Data
- #
- # Execute this script: bash rgr.sh
- #===========================================================================
-
- var=( 'MCD43C3' ) # Variable
- fld_in=( 'monthly/' ) # Folder of input files
- fld_out=( 'cesm-grid/' ) # Folder of output files
- drc_in='/media/grele_data/wenshan/modis/mcd43c3/' # Directory of input files
-
- for fn in $( ls ${drc_in}${fld_in}${var}.*.nc ); do # Loop over files
- sfx=$( echo $fn | cut -d '/' -f 8 | cut -d '.' -f 2 ) # Part of file names
-
- # Regrid
- ncap2 -O -S bi_interp.nco ${fn} ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
- # Keep only the new variables
- ncks -O -v wsa_sw_less,bsa_sw_less ${drc_in}${fld_out}${var}.${sfx}.regrid.nc \
- ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
- # Rename the new variables, dimensions and attributions
- ncrename -O -d latn,lat -d lonn,lon -v latn,lat -v lonn,lon \
- -v wsa_sw_less,wsa_sw -v bsa_sw_less,bsa_sw -a missing_value,_FillValue \
- ${drc_in}${fld_out}${var}.${sfx}.regrid.nc
-
- echo $sfx done.
- done
- *bi_interp.nco*
- // Bilinear interpolation
- // Included by rgr.sh
- // Online: http://nco.sourceforge.net/nco.html#Regrid-MODIS-Data
-
- defdim("latn",192); // Define new dimension: latitude
- defdim("lonn",288); // Define new dimension: longitude
- latn[$latn] = {90,89.0576 ,88.1152 ,87.1728 ,86.2304 ,85.288 ,\
- 84.3456 ,83.4031 ,82.4607 ,81.5183 ,80.5759 ,79.6335 ,78.6911 ,\
- 77.7487 ,76.8063 ,75.8639 ,74.9215 ,73.9791 ,73.0367 ,72.0942 ,\
- 71.1518 ,70.2094 ,69.267 ,68.3246 ,67.3822 ,66.4398 ,65.4974 ,\
- 64.555 ,63.6126 ,62.6702 ,61.7277 ,60.7853 ,59.8429 ,58.9005 ,\
- 57.9581 ,57.0157 ,56.0733 ,55.1309 ,54.1885 ,53.2461 ,52.3037 ,\
- 51.3613 ,50.4188 ,49.4764 ,48.534 ,47.5916 ,46.6492 ,45.7068 ,\
- 44.7644 ,43.822 ,42.8796 ,41.9372 ,40.9948 ,40.0524 ,39.11 ,\
- 38.1675 ,37.2251 ,36.2827 ,35.3403 ,34.3979 ,33.4555 ,32.5131 ,\
- 31.5707 ,30.6283 ,29.6859 ,28.7435 ,27.8011 ,26.8586 ,25.9162 ,\
- 24.9738 ,24.0314 ,23.089 ,22.1466 ,21.2042 ,20.2618 ,19.3194 ,\
- 18.377 ,17.4346 ,16.4921 ,15.5497 ,14.6073 ,13.6649 ,12.7225 ,\
- 11.7801 ,10.8377 ,9.89529 ,8.95288 ,8.01047 ,7.06806 ,6.12565 ,\
- 5.18325 ,4.24084 ,3.29843 ,2.35602 ,1.41361 ,0.471204,-0.471204,\
- -1.41361,-2.35602,-3.29843,-4.24084,-5.18325,-6.12565,-7.06806,\
- -8.01047,-8.95288,-9.89529,-10.8377,-11.7801,-12.7225,-13.6649,\
- -14.6073,-15.5497,-16.4921,-17.4346,-18.377 ,-19.3194,-20.2618,\
- -21.2042,-22.1466,-23.089 ,-24.0314,-24.9738,-25.9162,-26.8586,\
- -27.8011,-28.7435,-29.6859,-30.6283,-31.5707,-32.5131,-33.4555,\
- -34.3979,-35.3403,-36.2827,-37.2251,-38.1675,-39.11 ,-40.0524,\
- -40.9948,-41.9372,-42.8796,-43.822 ,-44.7644,-45.7068,-46.6492,\
- -47.5916,-48.534 ,-49.4764,-50.4188,-51.3613,-52.3037,-53.2461,\
- -54.1885,-55.1309,-56.0733,-57.0157,-57.9581,-58.9005,-59.8429,\
- -60.7853,-61.7277,-62.6702,-63.6126,-64.555 ,-65.4974,-66.4398,\
- -67.3822,-68.3246,-69.267 ,-70.2094,-71.1518,-72.0942,-73.0367,\
- -73.9791,-74.9215,-75.8639,-76.8063,-77.7487,-78.6911,-79.6335,\
- -80.5759,-81.5183,-82.4607,-83.4031,-84.3456,-85.288,-86.2304,\
- -87.1728,-88.1152,-89.0576,-90}; // Copy of CCSM4 latitude
- lonn[$lonn] = {-178.75,-177.5,-176.25,-175,-173.75,-172.5,-171.25,\
- -170,-168.75,-167.5,-166.25,-165,-163.75,-162.5,-161.25,-160,\
- -158.75,-157.5,-156.25,-155,-153.75,-152.5,-151.25,-150,-148.75,\
- -147.5,-146.25,-145,-143.75,-142.5,-141.25,-140,-138.75,-137.5,\
- -136.25,-135,-133.75,-132.5,-131.25,-130,-128.75,-127.5,-126.25,\
- -125,-123.75,-122.5,-121.25,-120,-118.75,-117.5,-116.25,-115,\
- -113.75,-112.5,-111.25,-110,-108.75,-107.5,-106.25,-105,-103.75,\
- -102.5,-101.25,-100,-98.75,-97.5,-96.25,-95,-93.75,-92.5,-91.25,\
- -90,-88.75,-87.5,-86.25,-85,-83.75,-82.5,-81.25,-80,-78.75,-77.5,\
- -76.25,-75,-73.75,-72.5,-71.25,-70,-68.75,-67.5,-66.25,-65,-63.75,\
- -62.5,-61.25,-60,-58.75,-57.5,-56.25,-55,-53.75,-52.5,-51.25,-50,\
- -48.75,-47.5,-46.25,-45,-43.75,-42.5,-41.25,-40,-38.75,-37.5,\
- -36.25,-35,-33.75,-32.5,-31.25,-30,-28.75,-27.5,-26.25,-25,-23.75,\
- -22.5,-21.25,-20,-18.75,-17.5,-16.25,-15,-13.75,-12.5,-11.25,-10,\
- -8.75,-7.5,-6.25,-5,-3.75,-2.5,-1.25,0,1.25,2.5,3.75,5,6.25,7.5,\
- 8.75,10,11.25,12.5,13.75,15,16.25,17.5,18.75,20,21.25,22.5,23.75,\
- 25,26.25,27.5,28.75,30,31.25,32.5,33.75,35,36.25,37.5,38.75,40,\
- 41.25,42.5,43.75,45,46.25,47.5,48.75,50,51.25,52.5,53.75,55,56.25,\
- 57.5,58.75,60,61.25,62.5,63.75,65,66.25,67.5,68.75,70,71.25,72.5,\
- 73.75,75,76.25,77.5,78.75,80,81.25,82.5,83.75,85,86.25,87.5,88.75,\
- 90,91.25,92.5,93.75,95,96.25,97.5,98.75,100,101.25,102.5,103.75,\
- 105,106.25,107.5,108.75,110,111.25,112.5,113.75,115,116.25,117.5,\
- 118.75,120,121.25,122.5,123.75,125,126.25,127.5,128.75,130,131.25,\
- 132.5,133.75,135,136.25,137.5,138.75,140,141.25,142.5,143.75,145,\
- 146.25,147.5,148.75,150,151.25,152.5,153.75,155,156.25,157.5,\
- 158.75,160,161.25,162.5,163.75,165,166.25,167.5,168.75,170,171.25,\
- 172.5,173.75,175,176.25,177.5,178.75,180}; // Copy of CCSM4 longitude
-
- *out[$time,$latn,$lonn]=0.0; // Output structure
-
- // Bi-linear interpolation
- bsa_sw_less=bilinear_interp_wrap(bsa_sw,out,latn,lonn,lat,lon);
- wsa_sw_less=bilinear_interp_wrap(wsa_sw,out,latn,lonn,lat,lon);
-
- // Add attributions
- latn at units = "degree_north";
- lonn at units = "degree_east";
- latn at long_name = "latitude";
- lonn at long_name = "longitude";
- bsa_sw_less at hdf_name = "Albedo_BSA_shortwave";
- bsa_sw_less at calibrated_nt = 5;
- bsa_sw_less at missing_value = 32767.0;
- bsa_sw_less at units = "albedo, no units";
- bsa_sw_less at long_name = "Global_Albedo_BSA_shortwave";
- wsa_sw_less at hdf_name = "Albedo_WSA_shortwave";
- wsa_sw_less at calibrated_nt = 5;
- wsa_sw_less at missing_value = 32767.0;
- wsa_sw_less at units = "albedo, no units";
- wsa_sw_less at long_name = "Global_Albedo_WSA_shortwave";
-
-7.6 Add Coordinates to MODIS Data
-=================================
-
-*Main Script*
- #!/bin/bash
-
- #============================================================
- # Example for
- # - regrid (using bi_interp.nco): the spatial resolution of MODIS data
- # is much finer than those of CMIP5 models. In order to compare
- # the two, we can regrid MODIS data to comform to CMIP5.
- # - add coordinates (using coor.nco): there is no coordinate information
- # in MODIS data. We have to add it manually now.
- #
- # Input files:
- # /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
- #
- # Output files:
- # /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
- #
- # Online: http://nco.sourceforge.net/nco.html#Add-Coordinates-to-MODIS-Data
- #
- # Execute this script: bash add_crd.sh
- #============================================================
-
- var=( 'MOD10CM' ) # Variable
- fld_in=( 'snc/nc/' ) # Folder of input files
- drc_in='/media/grele_data/wenshan/modis/' # directory of input files
-
- for fn in $( ls ${drc_in}${fld_in}${var}*.nc ); do # Loop over files
- sfx=$( echo ${fn} | cut -d '/' -f 8 | cut -d '.' -f 2-4 ) # Part of file names
- echo ${sfx}
-
- # Rename dimension names
- ncrename -d YDim_MOD_CMG_Snow_5km,lat -d XDim_MOD_CMG_Snow_5km,lon -O \
- ${drc_in}${fld_in}${var}.${sfx}.nc ${drc_in}${fld_in}${var}.${sfx}.nc
- # Add coordinates
- ncap2 -O -S crd.nco ${drc_in}${fld_in}${var}.${sfx}.nc \
- ${drc_in}${fld_in}${var}.${sfx}.nc
- done
- *crd.nco*
- // Add coordinates to MODIS HDF data
- // Included by add_crd.sh
- // Online: http://nco.sourceforge.net/nco.html#Add-Coordinates-to-MODIS-Data
-
- lon = array(0.f, 0.05, $lon) - 180;
- lat = 90.f- array(0.f, 0.05, $lat);
-
-7.7 Permute MODIS Coordinates
-=============================
-
-MODIS orders latitude data from 90oN to -90oN, and longitude from -180oE
-to 180oE. However, CMIP5 orders latitude from -90oN to 90oN, and
-longitude from 0oE to 360oE. This script changes the MODIS coordinates
-to follow the CMIP5 convention.
- #!/bin/bash
-
- ##===========================================================================
- ## Example for
- ## - permute coordinates: the grid of MODIS is
- ## from (-180 degE, 90 degN), the left-up corner, to
- ## (180 degE, -90 degN), the right-low corner. However, CMIP5 is
- ## from (0 degE, -90 degN) to (360 degE, 90 degN). The script
- ## here changes the MODIS grid to CMIP5 grid.
- ##
- ## Input files:
- ## /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
- ##
- ## Output files:
- ## /modis/mcd43c3/cesm-grid/MCD43C3.2000049.regrid.nc
- ##
- ## Online: http://nco.sourceforge.net/nco.html#Permute-MODIS-Coordinates
- ##
- ## Execute this script: bash pmt_crd.sh
- ##===========================================================================
-
- ##---------------------------------------------------------------------------
- ## Permute coordinates
- ## - Inverse lat from (90,-90) to (-90,90)
- ## - Permute lon from (-180,180) to (0,360)
- for fn in $( ls MCD43C3.*.nc ); do # Loop over files
- sfx=$( echo ${fn} | cut -d '.' -f 1-3 ) # Part of file names
- echo ${sfx}
-
- ## Lat
- ncpdq -O -a -lat ${fn} ${fn} # Inverse latitude (NB: there is '-' before 'lat')
-
- ## Lon
- ncks -O --msa -d lon,0.0,180.0 -d lon,-180.0,-1.25 ${fn} ${fn}
-
- ## Add new longitude coordinates
- ncap2 -O -s 'lon=array(0.0,1.25,$lon)' ${fn} ${fn}
- done
-
-8 Parallel
-**********
-
-This section will describe scripting strategies, including the use of
-GNU Parallel, to NCO.
- ls *historical*.nc | parallel ncks -O -d time,"1950-01-01","2000-01-01" {} 50y/{}
-
-9 CCSM Example
-**************
-
-This chapter illustrates how to use NCO to process and analyze the
-results of a CCSM climate simulation.
- ************************************************************************
- Task 0: Finding input files
- x************************************************************************
- The CCSM model outputs files to a local directory like:
-
- /ptmp/zender/archive/T42x1_40
-
- Each component model has its own subdirectory, e.g.,
-
- /ptmp/zender/archive/T42x1_40/atm
- /ptmp/zender/archive/T42x1_40/cpl
- /ptmp/zender/archive/T42x1_40/ice
- /ptmp/zender/archive/T42x1_40/lnd
- /ptmp/zender/archive/T42x1_40/ocn
-
- within which model output is tagged with the particular model name
-
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-01.nc
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-02.nc
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-03.nc
- ...
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-12.nc
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-01.nc
- /ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-02.nc
- ...
-
- or
-
- /ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-01.nc
- /ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-02.nc
- /ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-03.nc
- ...
-
- ************************************************************************
- Task 1: Regional processing
- ************************************************************************
- The first task in data processing is often creating seasonal cycles.
- Imagine a 100-year simulation with its 1200 monthly mean files.
- Our goal is to create a single file containing 12 months of data.
- Each month in the output file is the mean of 100 input files.
-
- Normally, we store the "reduced" data in a smaller, local directory.
-
- caseid='T42x1_40'
- #drc_in="${DATA}/archive/${caseid}/atm"
- drc_in="${DATA}/${caseid}"
- drc_out="${DATA}/${caseid}"
- mkdir -p ${drc_out}
- cd ${drc_out}
-
- Method 1: Assume all data in directory applies
- for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.*-${mm}.nc
- done # end loop over mth
-
- Method 2: Use shell 'globbing' to construct input filenames
- for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.00??-${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.0100-${mm}.nc
- done # end loop over mth
-
- Method 3: Construct input filename list explicitly
- for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- fl_lst_in=''
- for yr in {1..100}; do
- yyyy=`printf "%04d" $yr`
- fl_in=${caseid}.cam2.h0.${yyyy}-${mm}.nc
- fl_lst_in="${fl_lst_in} ${caseid}.cam2.h0.${yyyy}-${mm}.nc"
- done # end loop over yr
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc -p ${drc_in} \
- ${fl_lst_in}
- done # end loop over mth
-
- Make sure the output file averages correct input files!
- ncks -M prints global metadata:
-
- ncks -M ${drc_out}/${caseid}_clm01.nc
-
- The input files ncra used to create the climatological monthly mean
- will appear in the global attribute named 'history'.
-
- Use ncrcat to aggregate the climatological monthly means
-
- ncrcat -O -D 1 \
- ${drc_out}/${caseid}_clm??.nc ${drc_out}/${caseid}_clm_0112.nc
-
- Finally, create climatological means for reference.
- The climatological time-mean:
-
- ncra -O -D 1 \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm.nc
-
- The climatological zonal-mean:
-
- ncwa -O -D 1 -a lon \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_x.nc
-
- The climatological time- and spatial-mean:
-
- ncwa -O -D 1 -a lon,lat,time -w gw \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_xyt.nc
-
- This file contains only scalars, e.g., "global mean temperature",
- used for summarizing global results of a climate experiment.
-
- Climatological monthly anomalies = Annual Cycle:
- Subtract climatological mean from climatological monthly means.
- Result is annual cycle, i.e., climate-mean has been removed.
-
- ncbo -O -D 1 -o ${drc_out}/${caseid}_clm_0112_anm.nc \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm_xyt.nc
-
- ************************************************************************
- Task 2: Correcting monthly averages
- ************************************************************************
- The previous step appoximates all months as being equal, so, e.g.,
- February weighs slightly too much in the climatological mean.
- This approximation can be removed by weighting months appropriately.
- We must add the number of days per month to the monthly mean files.
- First, create a shell variable dpm:
-
- unset dpm # Days per month
- declare -a dpm
- dpm=(0 31 28.25 31 30 31 30 31 31 30 31 30 31) # Allows 1-based indexing
-
- Method 1: Create dpm directly in climatological monthly means
- for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -s "dpm=0.0*date+${dpm[${mth}]}" \
- ${drc_out}/${caseid}_clm${mm}.nc ${drc_out}/${caseid}_clm${mm}.nc
- done # end loop over mth
-
- Method 2: Create dpm by aggregating small files
- for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -v -s "dpm=${dpm[${mth}]}" ~/nco/data/in.nc \
- ${drc_out}/foo_${mm}.nc
- done # end loop over mth
- ncecat -O -D 1 -p ${drc_out} -n 12,2,2 foo_${mm}.nc foo.nc
- ncrename -O -D 1 -d record,time ${drc_out}/foo.nc
- ncatted -O -h \
- -a long_name,dpm,o,c,"Days per month" \
- -a units,dpm,o,c,"days" \
- ${drc_out}/${caseid}_clm_0112.nc
- ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
- Method 3: Create small netCDF file using ncgen
- cat > foo.cdl << 'EOF'
- netcdf foo {
- dimensions:
- time=unlimited;
- variables:
- float dpm(time);
- dpm:long_name="Days per month";
- dpm:units="days";
- data:
- dpm=31,28.25,31,30,31,30,31,31,30,31,30,31;
- }
- EOF
- ncgen -b -o foo.nc foo.cdl
- ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
- Another way to get correct monthly weighting is to average daily
- output files, if available.
-
- ************************************************************************
- Task 3: Regional processing
- ************************************************************************
- Let's say you are interested in examining the California region.
- Hyperslab your dataset to isolate the appropriate latitude/longitudes.
-
- ncks -O -D 1 -d lat,30.0,37.0 -d lon,240.0,270.0 \
- ${drc_out}/${caseid}_clm_0112.nc \
- ${drc_out}/${caseid}_clm_0112_Cal.nc
-
- The dataset is now much smaller!
- To examine particular metrics.
-
- ************************************************************************
- Task 4: Accessing data stored remotely
- ************************************************************************
- OPeNDAP server examples:
-
- UCI DAP servers:
- ncks -M -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata in.nc
- ncrcat -O -C -D 3 \
- -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata \
- -l /tmp in.nc in.nc ~/foo.nc
-
- Unidata DAP servers:
- ncks -M -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
- ncrcat -O -C -D 3 \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l /tmp in.nc in.nc ~/foo.nc
-
- NOAA DAP servers:
- ncwa -O -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
- http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc ~/foo.nc
-
- LLNL PCMDI IPCC OPeNDAP Data Portal:
- ncks -M -p http://username:password@esgcet.llnl.gov/cgi-bin/dap-cgi.py/ipcc4/sresa1b/ncar_ccsm3_0 pcmdi.ipcc4.ncar_ccsm3_0.sresa1b.run1.atm.mo.xml
-
- Earth System Grid (ESG): http://www.earthsystemgrid.org
-
- caseid='b30.025.ES01'
- CCSM3.0 1% increasing CO2 run, T42_gx1v3, 200 years starting in year 400
- Atmospheric post-processed data, monthly averages, e.g.,
- /data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0449-12.nc
- /data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0599-12.nc
-
- ESG supports password-protected FTP access by registered users
- NCO uses the .netrc file, if present, for password-protected FTP access
- Syntax for accessing single file is, e.g.,
- ncks -O -D 3 \
- -p ftp://climate.llnl.gov/sresa1b/atm/mo/tas/ncar_ccsm3_0/run1 \
- -l /tmp tas_A1.SRESA1B_1.CCSM.atmm.2000-01_cat_2099-12.nc ~/foo.nc
-
- # Average surface air temperature tas for SRESA1B scenario
- # This loop is illustrative and will not work until NCO correctly
- # translates '*' to FTP 'mget' all remote files
- for var in 'tas'; do
- for scn in 'sresa1b'; do
- for mdl in 'cccma_cgcm3_1 cccma_cgcm3_1_t63 cnrm_cm3 csiro_mk3_0 \
- gfdl_cm2_0 gfdl_cm2_1 giss_aom giss_model_e_h giss_model_e_r \
- iap_fgoals1_0_g inmcm3_0 ipsl_cm4 miroc3_2_hires miroc3_2_medres \
- miub_echo_g mpi_echam5 mri_cgcm2_3_2a ncar_ccsm3_0 ncar_pcm1 \
- ukmo_hadcm3 ukmo_hadgem1'; do
- for run in '1'; do
- ncks -R -O -D 3 -p ftp://climate.llnl.gov/${scn}/atm/mo/${var}/${mdl}/run${run} -l ${DATA}/${scn}/atm/mo/${var}/${mdl}/run${run} '*' ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
- done # end loop over run
- done # end loop over mdl
- done # end loop over scn
- done # end loop over var
-
- cd sresa1b/atm/mo/tas/ukmo_hadcm3/run1/
- ncks -H -m -v lat,lon,lat_bnds,lon_bnds -M tas_A1.nc | m
- bds -x 096 -y 073 -m 33 -o ${DATA}/data/dst_3.75x2.5.nc # ukmo_hadcm3
- ncview ${DATA}/data/dst_3.75x2.5.nc
-
- # msk_rgn is California mask on ukmo_hadcm3 grid
- # area is correct area weight on ukmo_hadcm3 grid
- ncks -A -v area,msk_rgn ${DATA}/data/dst_3.75x2.5.nc \
- ${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/area_msk_ukmo_hadcm3.nc
-
- Template for standardized data:
- ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
- e.g., raw data
- ${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/tas_A1.nc
- becomes standardized data
-
- Level 0: raw from IPCC site--no changes except for name
- Make symbolic link name match raw data
- Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
- ln -s -f tas_A1.nc sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc
- area_msk_ukmo_hadcm3.nc
-
- Level I: Add all variables (not standardized in time)
- to file containing msk_rgn and area
- Template: ${scn}_${mdl}_${run}_${yyyymm}_${yyyymm}.nc
-
- /bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
- ncks -A -v tas sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
- ncks -A -v pr sresa1b_ukmo_hadcm3_run1_pr_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
- If already have file then:
- mv sresa1b_ukmo_hadcm3_run1_200101_209911.nc foo.nc
- /bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
- ncks -A -v tas,pr foo.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
- Level II: Correct # years, months
- Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
- ncks -d time,....... file1.nc file2.nc
- ncrcat file2.nc file3.nc sresa1b_ukmo_hadcm3_run1_200001_209912.nc
-
- Level III: Many derived products from level II, e.g.,
-
- A. Global mean timeseries
- ncwa -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy.nc
-
- B. Califoria average timeseries
- ncwa -m msk_rgn -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy_Cal.nc
-
-10 References
-*************
-
- * [ZeM07] Zender, C. S., and H. J. Mangalam (2007), Scaling
- Properties of Common Statistical Operators for Gridded Datasets,
- Int. J. High Perform. Comput. Appl., 21(4), 485-498,
- doi:10.1177/1094342007083802.
- * [Zen08] Zender, C. S. (2008), Analysis of Self-describing Gridded
- Geoscience Data with netCDF Operators (NCO), Environ. Modell.
- Softw., 23(10), 1338-1342, doi:10.1016/j.envsoft.2008.03.004.
- * [WZJ07] Wang, D. L., C. S. Zender, and S. F. Jenks (2007),
- DAP-enabled Server-side Data Reduction and Analysis, Proceedings of
- the 23rd AMS Conference on Interactive Information and Processing
- Systems (IIPS) for Meteorology, Oceanography, and Hydrology, Paper
- 3B.2, January 14-18, San Antonio, TX. American Meteorological
- Society, AMS Press, Boston, MA.
- * [ZMW06] Zender, C. S., H. Mangalam, and D. L. Wang (2006),
- Improving Scaling Properties of Common Statistical Operators for
- Gridded Geoscience Datasets, Eos Trans. AGU, 87(52), Fall Meet.
- Suppl., Abstract IN53B-0827.
- * [ZeW07] Zender, C. S., and D. L. Wang (2007), High performance
- distributed data reduction and analysis with the netCDF Operators
- (NCO), Proceedings of the 23rd AMS Conference on Interactive
- Information and Processing Systems (IIPS) for Meteorology,
- Oceanography, and Hydrology, Paper 3B.4, January 14-18, San
- Antonio, TX. American Meteorological Society, AMS Press, Boston,
- MA.
- * [WZJ06] Wang, D. L., C. S. Zender, and S. F. Jenks (2006),
- Server-side netCDF Data Reduction and Analysis, Eos Trans. AGU,
- 87(52), Fall Meet. Suppl., Abstract IN53B-0826.
- * [WZJ073] Wang, D. L., C. S. Zender, and S. F. Jenks (2007),
- Server-side parallel data reduction and analysis, in Advances in
- Grid and Pervasive Computing, Second International Conference, GPC
- 2007, Paris, France, May 2-4, 2007, Proceedings. IEEE Lecture
- Notes in Computer Science, vol. 4459, edited by C. Cerin and K.-C.
- Li, pp. 744-750, Springer-Verlag, Berlin/Heidelberg,
- doi:10.1007/978-3-540-72360-8_67.
- * [WZJ074] Wang, D. L., C. S. Zender and S. F. Jenks (2007), A System
- for Scripted Data Analysis at Remote Data Centers, Eos Trans. AGU,
- 88(52), Fall Meet. Suppl., Abstract IN11B-0469.
- * [WZJ081] Wang, D. L., C. S. Zender and S. F. Jenks (2008), Cluster
- Workflow Execution of Retargeted Data Analysis Scripts, Proceedings
- of the 8th IEEE Int'l Symposium on Cluster Computing and the Grid
- (IEEE CCGRID '08), pp. 449-458, Lyon, France, May 2008.
- * [WZJ091] Wang, D. L., C. S. Zender, and S. F. Jenks (2009),
- Efficient Clustered Server-side Data Analysis Workflows using
- SWAMP, Earth Sci. Inform., 2(3), 141-155,
- doi:10.1007/s12145-009-0021-z.
- * [PFT88] Press, Flannery, Teukolsky, and Vetterling (1988),
- Numerical Recipes in C, Cambridge Univ. Press, New York, NY.
-
-General Index
-*************
-
-* Menu:
-
-* '"' (double quote): ncatted netCDF Attribute Editor.
- (line 9120)
-* '#include': Syntax of ncap2 statements.
- (line 6308)
-* '$' (wildcard character): Subsetting Files. (line 2591)
-* '%' (modulus): Intrinsic mathematical methods.
- (line 8690)
-* ''' (end quote): ncatted netCDF Attribute Editor.
- (line 9120)
-* '*': ncbo netCDF Binary Operator.
- (line 9253)
-* '*' (filename expansion): Subsetting Files. (line 2591)
-* '*' (multiplication): Intrinsic mathematical methods.
- (line 8690)
-* '*' (wildcard character): Subsetting Files. (line 2598)
-* '+': ncbo netCDF Binary Operator.
- (line 9253)
-* '+' (addition): Intrinsic mathematical methods.
- (line 8690)
-* '+' (wildcard character): Subsetting Files. (line 2598)
-* '-': ncbo netCDF Binary Operator.
- (line 9253)
-* '-' (subtraction): Intrinsic mathematical methods.
- (line 8690)
-* '--3': File Formats and Conversion.
- (line 2121)
-* '--4': File Formats and Conversion.
- (line 2121)
-* '--5': File Formats and Conversion.
- (line 2121)
-* '--6': File Formats and Conversion.
- (line 2121)
-* '--64bit': File Formats and Conversion.
- (line 2121)
-* '--7': File Formats and Conversion.
- (line 2121)
-* '--abc': ncks netCDF Kitchen Sink.
- (line 10079)
-* '--alphabetize': ncks netCDF Kitchen Sink.
- (line 10079)
-* '--apn': Temporary Output Files.
- (line 1007)
-* '--apn' <1>: Batch Mode. (line 5954)
-* '--apn' <2>: Filters for 'ncks'.
- (line 10555)
-* '--append': Temporary Output Files.
- (line 1007)
-* '--append' <1>: Batch Mode. (line 5954)
-* '--append' <2>: Filters for 'ncks'.
- (line 10555)
-* '--auxiliary': Auxiliary Coordinates.
- (line 3667)
-* '--auxiliary LON_MIN,LON_MAX,LAT_MIN,LAT_MAX': Auxiliary Coordinates.
- (line 3667)
-* '--bfr_sz_hnt': Buffer sizes. (line 5048)
-* '--binary': ncks netCDF Kitchen Sink.
- (line 10089)
-* '--bnr': ncks netCDF Kitchen Sink.
- (line 10089)
-* '--cdl': ncks netCDF Kitchen Sink.
- (line 10144)
-* '--cell_methods': CF Conventions. (line 6122)
-* '--chunk_byte': Chunking. (line 4135)
-* '--chunk_dimension': Chunking. (line 4135)
-* '--chunk_map': Chunking. (line 4135)
-* '--chunk_min': Chunking. (line 4135)
-* '--chunk_policy': Chunking. (line 4135)
-* '--chunk_scalar': Chunking. (line 4135)
-* '--cll_mth': CF Conventions. (line 6122)
-* '--cnk_byt': Chunking. (line 4135)
-* '--cnk_dmn': Chunking. (line 4135)
-* '--cnk_map': Chunking. (line 4135)
-* '--cnk_map CNK_MAP': Chunking. (line 4252)
-* '--cnk_min': Chunking. (line 4135)
-* '--cnk_plc': Chunking. (line 4135)
-* '--cnk_scl': Chunking. (line 4135)
-* '--coords': Subsetting Coordinate Variables.
- (line 2668)
-* '--coords' <1>: CF Conventions. (line 6111)
-* '--crd': Subsetting Coordinate Variables.
- (line 2668)
-* '--crd' <1>: CF Conventions. (line 6111)
-* '--create_ram': Temporary Output Files.
- (line 965)
-* '--create_ram' <1>: RAM disks. (line 5079)
-* '--data': ncks netCDF Kitchen Sink.
- (line 10192)
-* '--dbg_lvl DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 880)
-* '--dbg_lvl DEBUG-LEVEL' <1>: Large Datasets. (line 1343)
-* '--dbg_lvl DEBUG-LEVEL' <2>: Command Line Options.
- (line 1631)
-* '--dbl': Promoting Single-precision to Double.
- (line 5597)
-* '--debug-level DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 880)
-* '--debug-level DEBUG-LEVEL' <1>: Large Datasets. (line 1343)
-* '--deflate': Deflation. (line 4938)
-* '--dfl_lvl': Deflation. (line 4938)
-* '--dimension DIM,[MIN],[MAX],STRIDE': Stride. (line 3285)
-* '--dimension DIM,[MIN],[MAX],[STRIDE],[SUBCYCLE]': Subcycle.
- (line 3397)
-* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3166)
-* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs.
- (line 3473)
-* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3617)
-* '--dimension DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support.
- (line 3777)
-* '--diskless_all': Memory Requirements.
- (line 1354)
-* '--diskless_all' <1>: RAM disks. (line 5079)
-* '--dmn DIM,[MIN],[MAX],STRIDE': Stride. (line 3285)
-* '--dmn DIM,[MIN],[MAX],[STRIDE],SUBCYCLE]': Subcycle. (line 3397)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3166)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3473)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3617)
-* '--dmn DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support.
- (line 3777)
-* '--ensemble_file': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--ensemble_group': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--ensemble_suffix': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--exclude': Subsetting Files. (line 2410)
-* '--exclude' <1>: Filters for 'ncks'.
- (line 10549)
-* '--file_format': File Formats and Conversion.
- (line 2121)
-* '--file_list': File List Attributes.
- (line 6002)
-* '--fix_rec_dmn all': Autoconversion. (line 2341)
-* '--fix_rec_dmn DIM': ncks netCDF Kitchen Sink.
- (line 10105)
-* '--flt': Promoting Single-precision to Double.
- (line 5597)
-* '--fl_bnr': ncks netCDF Kitchen Sink.
- (line 10089)
-* '--fl_fmt': File Formats and Conversion.
- (line 2121)
-* '--fl_lst_in': File List Attributes.
- (line 6002)
-* '--fl_out FL_OUT': Specifying Output Files.
- (line 1795)
-* '--fl_spt': ncap2 netCDF Arithmetic Processor.
- (line 6246)
-* '--fnc_tbl': Intrinsic mathematical methods.
- (line 8797)
-* '--fortran': C and Fortran Index Conventions.
- (line 3129)
-* '--gag': ncecat netCDF Ensemble Concatenator.
- (line 9717)
-* '--gag' <1>: Combine Files. (line 12071)
-* '--glb_mtd_spp': ncecat netCDF Ensemble Concatenator.
- (line 9743)
-* '--gpe GPE_DSC': Group Path Editing.
- (line 2695)
-* '--group GRP': Subsetting Files. (line 2410)
-* '--grp GRP': Subsetting Files. (line 2410)
-* '--grp_xtr_var_xcl': Subsetting Files. (line 2410)
-* '--gxvx': Subsetting Files. (line 2410)
-* '--hdf4': netCDF2/3/4 and HDF4/5 Support.
- (line 680)
-* '--hdf_unpack': Packed data. (line 5166)
-* '--hdf_upk': Packed data. (line 5166)
-* '--hdn': ncks netCDF Kitchen Sink.
- (line 10130)
-* '--hdr_pad HDR_PAD': Metadata Optimization.
- (line 1527)
-* '--header_pad HDR_PAD': Metadata Optimization.
- (line 1527)
-* '--hidden': ncks netCDF Kitchen Sink.
- (line 10130)
-* '--hieronymus': ncks netCDF Kitchen Sink.
- (line 10192)
-* '--history': History Attribute. (line 5974)
-* '--hst': History Attribute. (line 5974)
-* '--intersection': Subsetting Files. (line 2516)
-* '--lcl OUTPUT-PATH': Remote storage. (line 1827)
-* '--local OUTPUT-PATH': Remote storage. (line 1827)
-* '--map CNK_MAP': Chunking. (line 4252)
-* '--map PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 10783)
-* '--mask-value MASK_VAL': Mask condition. (line 11533)
-* '--mask-variable MASK_VAR': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--mask_comparator MASK_COMP': Mask condition. (line 11519)
-* '--mask_condition MASK_COND': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--mask_condition MASK_COND' <1>: Mask condition. (line 11519)
-* '--mask_value MASK_VAL': Mask condition. (line 11533)
-* '--mask_variable MASK_VAR': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--md5_dgs': MD5 digests. (line 4978)
-* '--md5_digest': MD5 digests. (line 4978)
-* '--md5_write_attribute': MD5 digests. (line 4978)
-* '--md5_wrt_att': MD5 digests. (line 4978)
-* '--Metadata': ncks netCDF Kitchen Sink.
- (line 10237)
-* '--metadata': ncks netCDF Kitchen Sink.
- (line 10280)
-* '--mk_rec_dmn DIM': ncecat netCDF Ensemble Concatenator.
- (line 9802)
-* '--mk_rec_dmn DIM' <1>: ncks netCDF Kitchen Sink.
- (line 10184)
-* '--mrd': Multiple Record Dimensions.
- (line 3984)
-* '--mro': Subcycle. (line 3397)
-* '--msa': Multislabs. (line 3473)
-* '--msa_user_order': Multislabs. (line 3473)
-* '--msa_usr_rdr': Multislabs. (line 3473)
-* '--msk_cmp_typ MASK_COMP': Mask condition. (line 11519)
-* '--msk_cnd MASK_COND': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--msk_cnd_sng MASK_COND': Mask condition. (line 11519)
-* '--msk_nm MASK_VAR': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--msk_val MASK_VAL': Mask condition. (line 11533)
-* '--msk_var MASK_VAR': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--Mtd': ncks netCDF Kitchen Sink.
- (line 10237)
-* '--mtd': ncks netCDF Kitchen Sink.
- (line 10280)
-* '--multiple_record_dimensions': Multiple Record Dimensions.
- (line 3984)
-* '--ncml': ncks netCDF Kitchen Sink.
- (line 10364)
-* '--netcdf4': File Formats and Conversion.
- (line 2121)
-* '--nintap LOOP': Specifying Input Files.
- (line 1687)
-* '--no-blank': ncks netCDF Kitchen Sink.
- (line 10293)
-* '--no-coords': Subsetting Coordinate Variables.
- (line 2668)
-* '--no-coords' <1>: CF Conventions. (line 6111)
-* '--no-crd': Subsetting Coordinate Variables.
- (line 2668)
-* '--no-crd' <1>: CF Conventions. (line 6111)
-* '--noblank': ncks netCDF Kitchen Sink.
- (line 10293)
-* '--no_blank': ncks netCDF Kitchen Sink.
- (line 10293)
-* '--no_blank' <1>: Filters for 'ncks'.
- (line 10603)
-* '--no_cell_methods': CF Conventions. (line 6122)
-* '--no_cll_mth': CF Conventions. (line 6122)
-* '--no_dmn_var_nm': ncks netCDF Kitchen Sink.
- (line 10353)
-* '--no_dmn_var_nm' <1>: Filters for 'ncks'.
- (line 10615)
-* '--no_nm_prn': ncks netCDF Kitchen Sink.
- (line 10353)
-* '--no_nm_prn' <1>: Filters for 'ncks'.
- (line 10615)
-* '--no_rec_dmn DIM': ncks netCDF Kitchen Sink.
- (line 10105)
-* '--no_tmp_fl': Temporary Output Files.
- (line 965)
-* '--no_tmp_fl' <1>: RAM disks. (line 5159)
-* '--nsm_fl': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--nsm_grp': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--nsm_sfx': nces netCDF Ensemble Statistics.
- (line 9545)
-* '--nsx': Subsetting Files. (line 2516)
-* '--omp_num_threads THR_NBR': OpenMP Threading. (line 1550)
-* '--open_ram': Temporary Output Files.
- (line 965)
-* '--open_ram' <1>: Memory Requirements.
- (line 1354)
-* '--open_ram' <2>: RAM disks. (line 5079)
-* '--operation OP_TYP': Operation Types. (line 5303)
-* '--operation OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 9253)
-* '--op_rlt MASK_COMP': Mask condition. (line 11519)
-* '--op_typ OP_TYP': Operation Types. (line 5303)
-* '--op_typ OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 9253)
-* '--orphan_dimensions': ncks netCDF Kitchen Sink.
- (line 10327)
-* '--output FL_OUT': Specifying Output Files.
- (line 1795)
-* '--overwrite': Temporary Output Files.
- (line 1007)
-* '--overwrite' <1>: Batch Mode. (line 5954)
-* '--ovr': Temporary Output Files.
- (line 1007)
-* '--ovr' <1>: Batch Mode. (line 5954)
-* '--pack_policy PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 10716)
-* '--path INPUT-PATH': Specifying Input Files.
- (line 1687)
-* '--path INPUT-PATH' <1>: Remote storage. (line 1827)
-* '--pck_map PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 10783)
-* '--pck_plc PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 10716)
-* '--ppc': Compression. (line 4427)
-* '--precision_preserving_compression': Compression. (line 4427)
-* '--print': ncks netCDF Kitchen Sink.
- (line 10301)
-* '--prn': ncks netCDF Kitchen Sink.
- (line 10301)
-* '--prn_fnc_tbl': Intrinsic mathematical methods.
- (line 8797)
-* '--pseudonym': Symbolic Links. (line 540)
-* '--pth INPUT-PATH': Specifying Input Files.
- (line 1687)
-* '--pth INPUT-PATH' <1>: Remote storage. (line 1827)
-* '--quantize': Compression. (line 4427)
-* '--quench': ncks netCDF Kitchen Sink.
- (line 10319)
-* '--quiet': ncks netCDF Kitchen Sink.
- (line 10307)
-* '--quiet' <1>: Filters for 'ncks'.
- (line 10615)
-* '--rad': ncks netCDF Kitchen Sink.
- (line 10327)
-* '--ram_all': Memory Requirements.
- (line 1354)
-* '--ram_all' <1>: RAM disks. (line 5079)
-* '--rcd_nm ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 9692)
-* '--record_append': Record Appending. (line 3346)
-* '--rec_apn': Record Appending. (line 3346)
-* '--retain': Retaining Retrieved Files.
- (line 2081)
-* '--retain_all_dimensions': ncks netCDF Kitchen Sink.
- (line 10327)
-* '--revision': Help Requests and Bug Reports.
- (line 880)
-* '--revision' <1>: Operator Version. (line 6196)
-* '--rph_dmn': ncks netCDF Kitchen Sink.
- (line 10327)
-* '--rth_dbl': Promoting Single-precision to Double.
- (line 5597)
-* '--rth_flt': Promoting Single-precision to Double.
- (line 5597)
-* '--rtn': Retaining Retrieved Files.
- (line 2081)
-* '--scr': ncks netCDF Kitchen Sink.
- (line 10342)
-* '--script': ncap2 netCDF Arithmetic Processor.
- (line 6246)
-* '--script-file': ncap2 netCDF Arithmetic Processor.
- (line 6246)
-* '--secret': ncks netCDF Kitchen Sink.
- (line 10342)
-* '--sng_fmt': ncks netCDF Kitchen Sink.
- (line 10338)
-* '--sng_fmt' <1>: Filters for 'ncks'.
- (line 10576)
-* '--spt': ncap2 netCDF Arithmetic Processor.
- (line 6246)
-* '--ssh': ncks netCDF Kitchen Sink.
- (line 10342)
-* '--string': ncks netCDF Kitchen Sink.
- (line 10338)
-* '--string' <1>: Filters for 'ncks'.
- (line 10576)
-* '--threads THR_NBR': OpenMP Threading. (line 1550)
-* '--thr_nbr THR_NBR': OpenMP Threading. (line 1550)
-* '--ulm_nm ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 9692)
-* '--union': Subsetting Files. (line 2410)
-* '--union' <1>: Subsetting Files. (line 2516)
-* '--units': ncks netCDF Kitchen Sink.
- (line 10349)
-* '--unn': Subsetting Files. (line 2410)
-* '--unn' <1>: Subsetting Files. (line 2516)
-* '--unpack': ncpdq netCDF Permute Dimensions Quickly.
- (line 10767)
-* '--upk': ncpdq netCDF Permute Dimensions Quickly.
- (line 10767)
-* '--variable VAR': Subsetting Files. (line 2410)
-* '--variable VAR' <1>: Filters for 'ncks'.
- (line 10549)
-* '--var_val': ncks netCDF Kitchen Sink.
- (line 10353)
-* '--var_val' <1>: Filters for 'ncks'.
- (line 10615)
-* '--version': Help Requests and Bug Reports.
- (line 880)
-* '--version' <1>: Operator Version. (line 6196)
-* '--vrs': Help Requests and Bug Reports.
- (line 880)
-* '--vrs' <1>: Operator Version. (line 6196)
-* '--weight WEIGHT': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--weight WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9842)
-* '--wgt_var WEIGHT': ncwa netCDF Weighted Averager.
- (line 11465)
-* '--wgt_var WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9842)
-* '--write_tmp_fl': Temporary Output Files.
- (line 965)
-* '--wrt_tmp_fl': Temporary Output Files.
- (line 965)
-* '--xcl': Subsetting Files. (line 2410)
-* '--xcl' <1>: Filters for 'ncks'.
- (line 10549)
-* '--xml': ncks netCDF Kitchen Sink.
- (line 10364)
-* '--xml_no_location': ncks netCDF Kitchen Sink.
- (line 10394)
-* '--xml_spr_chr': ncks netCDF Kitchen Sink.
- (line 10394)
-* '--xml_spr_nmr': ncks netCDF Kitchen Sink.
- (line 10394)
-* '-0': Hyperslabs. (line 3166)
-* '-3': netCDF2/3/4 and HDF4/5 Support.
- (line 673)
-* '-3' <1>: File Formats and Conversion.
- (line 2121)
-* '-4': netCDF2/3/4 and HDF4/5 Support.
- (line 673)
-* '-4' <1>: File Formats and Conversion.
- (line 2121)
-* '-5': File Formats and Conversion.
- (line 2121)
-* '-5' <1>: ncks netCDF Kitchen Sink.
- (line 10072)
-* '-6': File Formats and Conversion.
- (line 2121)
-* '-7': File Formats and Conversion.
- (line 2121)
-* '-A': Temporary Output Files.
- (line 1007)
-* '-A' <1>: Batch Mode. (line 5954)
-* '-a': ncks netCDF Kitchen Sink.
- (line 10079)
-* '-a' <1>: Filters for 'ncks'.
- (line 10543)
-* '-A' <2>: Filters for 'ncks'.
- (line 10555)
-* '-A' <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10899)
-* '-b': Examples ncap2. (line 8668)
-* '-b' <1>: ncbo netCDF Binary Operator.
- (line 9351)
-* '-b' <2>: ncks netCDF Kitchen Sink.
- (line 10089)
-* '-B MASK_COND': ncwa netCDF Weighted Averager.
- (line 11465)
-* '-B MASK_COND' <1>: Mask condition. (line 11519)
-* '-C': Subsetting Coordinate Variables.
- (line 2668)
-* '-c': Subsetting Coordinate Variables.
- (line 2668)
-* '-C' <1>: CF Conventions. (line 6111)
-* '-c' <1>: CF Conventions. (line 6111)
-* '-C' <2>: Examples ncap2. (line 8680)
-* '-D': Help Requests and Bug Reports.
- (line 865)
-* '-D DEBUG-LEVEL': Help Requests and Bug Reports.
- (line 880)
-* '-D DEBUG-LEVEL' <1>: Large Datasets. (line 1343)
-* '-D DEBUG-LEVEL' <2>: Command Line Options.
- (line 1631)
-* '-d DIM,[MIN],[MAX],STRIDE': Stride. (line 3285)
-* '-d DIM,[MIN],[MAX],[STRIDE],[SUBCYCLE]': Subcycle. (line 3397)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]': Hyperslabs. (line 3166)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <1>: Multislabs. (line 3473)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <2>: Wrapped Coordinates.
- (line 3617)
-* '-d DIM,[MIN][,[MAX][,[STRIDE]]]' <3>: UDUnits Support. (line 3777)
-* '-d DIM,[MIN][,[MAX]]': ncwa netCDF Weighted Averager.
- (line 11457)
-* '-F': C and Fortran Index Conventions.
- (line 3129)
-* '-f': Intrinsic mathematical methods.
- (line 8797)
-* '-G GPE_DSC': Group Path Editing.
- (line 2695)
-* '-g GRP': Subsetting Files. (line 2410)
-* '-h': History Attribute. (line 5974)
-* '-H': File List Attributes.
- (line 6002)
-* '-h' <1>: ncatted netCDF Attribute Editor.
- (line 8944)
-* '-H' <1>: ncks netCDF Kitchen Sink.
- (line 10192)
-* '-I': ncwa netCDF Weighted Averager.
- (line 11493)
-* '-L': Deflation. (line 4938)
-* '-l OUTPUT-PATH': Remote storage. (line 1827)
-* '-l OUTPUT-PATH' <1>: Remote storage. (line 1890)
-* '-M': Determining File Format.
- (line 2207)
-* '-M' <1>: ncecat netCDF Ensemble Concatenator.
- (line 9743)
-* '-M' <2>: ncks netCDF Kitchen Sink.
- (line 10237)
-* '-m': ncks netCDF Kitchen Sink.
- (line 10280)
-* '-M CNK_MAP': Chunking. (line 4252)
-* '-m MASK_VAR': ncwa netCDF Weighted Averager.
- (line 11465)
-* '-M PCK_MAP': ncpdq netCDF Permute Dimensions Quickly.
- (line 10783)
-* '-N': Normalization and Integration.
- (line 11548)
-* '-n LOOP': Large Numbers of Files.
- (line 1209)
-* '-n LOOP' <1>: Large Numbers of Files.
- (line 1279)
-* '-n LOOP' <2>: Specifying Input Files.
- (line 1687)
-* '-O': Temporary Output Files.
- (line 1007)
-* '-O' <1>: Batch Mode. (line 5954)
-* '-o FL_OUT': Large Numbers of Files.
- (line 1263)
-* '-o FL_OUT' <1>: Specifying Output Files.
- (line 1795)
-* '-P': ncks netCDF Kitchen Sink.
- (line 10301)
-* '-p INPUT-PATH': Specifying Input Files.
- (line 1687)
-* '-p INPUT-PATH' <1>: Remote storage. (line 1890)
-* '-P PCK_PLC': ncpdq netCDF Permute Dimensions Quickly.
- (line 10716)
-* '-Q': ncks netCDF Kitchen Sink.
- (line 10307)
-* '-q': ncks netCDF Kitchen Sink.
- (line 10319)
-* '-Q' <1>: Filters for 'ncks'.
- (line 10615)
-* '-r': Help Requests and Bug Reports.
- (line 865)
-* '-r' <1>: Help Requests and Bug Reports.
- (line 880)
-* '-R': Retaining Retrieved Files.
- (line 2081)
-* '-r' <2>: Operator Version. (line 6196)
-* '-s': ncks netCDF Kitchen Sink.
- (line 10338)
-* '-s' <1>: Filters for 'ncks'.
- (line 10576)
-* '-t THR_NBR': Single and Multi-file Operators.
- (line 1437)
-* '-t THR_NBR' <1>: OpenMP Threading. (line 1550)
-* '-u': ncks netCDF Kitchen Sink.
- (line 10349)
-* '-U': ncpdq netCDF Permute Dimensions Quickly.
- (line 10767)
-* '-u ULM_NM': ncecat netCDF Ensemble Concatenator.
- (line 9692)
-* '-V': ncks netCDF Kitchen Sink.
- (line 10353)
-* '-V' <1>: Filters for 'ncks'.
- (line 10615)
-* '-v': ncpdq netCDF Permute Dimensions Quickly.
- (line 10899)
-* '-v VAR': Subsetting Files. (line 2410)
-* '-v VAR' <1>: Filters for 'ncks'.
- (line 10549)
-* '-w WEIGHT': ncwa netCDF Weighted Averager.
- (line 11465)
-* '-w WGT1[,WGT2]': ncflint netCDF File Interpolator.
- (line 9842)
-* '-x': Subsetting Files. (line 2410)
-* '-X': Auxiliary Coordinates.
- (line 3667)
-* '-x' <1>: Filters for 'ncks'.
- (line 10549)
-* '-X LON_MIN,LON_MAX,LAT_MIN,LAT_MAX': Auxiliary Coordinates.
- (line 3667)
-* '-y OP_TYP': Operation Types. (line 5303)
-* '-y OP_TYP' <1>: ncbo netCDF Binary Operator.
- (line 9253)
-* '.': ncrename netCDF Renamer.
- (line 11220)
-* '.' (wildcard character): Subsetting Files. (line 2591)
-* '.bashrc': Filters for 'ncks'.
- (line 10448)
-* '.netrc': Remote storage. (line 1827)
-* '.rhosts': Remote storage. (line 1827)
-* '/': ncbo netCDF Binary Operator.
- (line 9253)
-* '/' (division): Intrinsic mathematical methods.
- (line 8690)
-* '/*...*/' (comment): Syntax of ncap2 statements.
- (line 6305)
-* '//' (comment): Syntax of ncap2 statements.
- (line 6305)
-* '0' (NUL): ncatted netCDF Attribute Editor.
- (line 9129)
-* 32-bit offset file format: Determining File Format.
- (line 2207)
-* 64-bit offset file format: Determining File Format.
- (line 2207)
-* '64BIT' files: File Formats and Conversion.
- (line 2121)
-* ':' (separator character): Flattening Groups. (line 2736)
-* ';' (end of statement): Syntax of ncap2 statements.
- (line 6303)
-* '<arpa/nameser.h>': Windows Operating System.
- (line 508)
-* '<resolv.h>': Windows Operating System.
- (line 508)
-* '?' (filename expansion): Subsetting Files. (line 2591)
-* '?' (question mark): ncatted netCDF Attribute Editor.
- (line 9120)
-* '?' (wildcard character): Subsetting Files. (line 2598)
-* '@' (attribute): Syntax of ncap2 statements.
- (line 6313)
-* '@' (separator character): Flattening Groups. (line 2736)
-* '[]' (array delimiters): Syntax of ncap2 statements.
- (line 6297)
-* '\' (backslash): ncatted netCDF Attribute Editor.
- (line 9120)
-* '\"' (protected double quote): ncatted netCDF Attribute Editor.
- (line 9120)
-* '\'' (protected end quote): ncatted netCDF Attribute Editor.
- (line 9120)
-* '\?' (protected question mark): ncatted netCDF Attribute Editor.
- (line 9120)
-* '\a' (ASCII BEL, bell): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\b' (ASCII BS, backspace): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\f' (ASCII FF, formfeed): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\n' (ASCII LF, linefeed): ncatted netCDF Attribute Editor.
- (line 9105)
-* '\n' (linefeed): Filters for 'ncks'.
- (line 10576)
-* '\r' (ASCII CR, carriage return): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\t' (ASCII HT, horizontal tab): ncatted netCDF Attribute Editor.
- (line 9105)
-* '\t' (horizontal tab): Filters for 'ncks'.
- (line 10576)
-* '\v' (ASCII VT, vertical tab): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\\' (ASCII \, backslash): ncatted netCDF Attribute Editor.
- (line 9115)
-* '\\' (protected backslash): ncatted netCDF Attribute Editor.
- (line 9120)
-* '^' (power): Intrinsic mathematical methods.
- (line 8690)
-* '^' (wildcard character): Subsetting Files. (line 2591)
-* '_ChunkSizes': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_DeflateLevel': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_Endianness': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_FillValue': Missing Values. (line 4022)
-* '_FillValue' <1>: Packed data. (line 5166)
-* '_FillValue' <2>: ncatted netCDF Attribute Editor.
- (line 8958)
-* '_FillValue' <3>: ncflint netCDF File Interpolator.
- (line 9891)
-* _FILLVALUE: ncpdq netCDF Permute Dimensions Quickly.
- (line 10827)
-* '_FillValue' <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10827)
-* '_FillValue' <5>: ncrename netCDF Renamer.
- (line 11386)
-* '_Fletcher32': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_Format': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_NOFILL': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_Shuffle': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_SOURCE_FORMAT': ncks netCDF Kitchen Sink.
- (line 10130)
-* '_Storage': ncks netCDF Kitchen Sink.
- (line 10130)
-* '|' (wildcard character): Subsetting Files. (line 2598)
-* ABS: Intrinsic mathematical methods.
- (line 8693)
-* absolute value: Intrinsic mathematical methods.
- (line 8693)
-* ACOS: Intrinsic mathematical methods.
- (line 8693)
-* ACOSH: Intrinsic mathematical methods.
- (line 8693)
-* 'add': ncbo netCDF Binary Operator.
- (line 9253)
-* adding data: ncbo netCDF Binary Operator.
- (line 9235)
-* adding data <1>: ncflint netCDF File Interpolator.
- (line 9818)
-* addition: Intrinsic mathematical methods.
- (line 8690)
-* addition <1>: ncbo netCDF Binary Operator.
- (line 9235)
-* addition <2>: ncflint netCDF File Interpolator.
- (line 9818)
-* ADD_OFFSET: Performance. (line 1490)
-* 'add_offset': Packed data. (line 5166)
-* 'add_offset' <1>: ncecat netCDF Ensemble Concatenator.
- (line 9765)
-* 'add_offset' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10709)
-* 'add_offset' <3>: ncrcat netCDF Record Concatenator.
- (line 11157)
-* aggregation: Combine Files. (line 12071)
-* Aleksandar Jelenak: Contributors. (line 11757)
-* Alexander Hansen: Contributors. (line 11765)
-* 'alias': ncbo netCDF Binary Operator.
- (line 9297)
-* alias: Filters for 'ncks'.
- (line 10448)
-* 'alias' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10777)
-* 'all': Chunking. (line 4189)
-* alphabetization: ncks netCDF Kitchen Sink.
- (line 10079)
-* alphabetize output: Filters for 'ncks'.
- (line 10543)
-* alternate invocations: ncbo netCDF Binary Operator.
- (line 9253)
-* anchor: Subsetting Files. (line 2467)
-* anchoring: Subsetting Files. (line 2467)
-* ancillary variables convention: CF Conventions. (line 6101)
-* 'ancillary_variables' attribute: CF Conventions. (line 6101)
-* 'ancillary_variables' attribute <1>: Filters for 'ncks'.
- (line 10640)
-* Andrea Cimatoribus: Contributors. (line 11771)
-* Andrew Wittenberg: Contributors. (line 11755)
-* annual average: Annual Average over Regions.
- (line 12298)
-* annual average from daily data: Daily data in one file.
- (line 11846)
-* annual average from monthly data: Monthly data in one file.
- (line 11869)
-* anomalies: ncbo netCDF Binary Operator.
- (line 9335)
-* anomalies <1>: Annual Average over Regions.
- (line 12298)
-* anomalies <2>: Monthly Cycle. (line 12589)
-* ANSI: Compatability. (line 421)
-* 'ANSI C': Intrinsic mathematical methods.
- (line 8796)
-* appending data: Examples ncap2. (line 8668)
-* appending data <1>: ncks netCDF Kitchen Sink.
- (line 10020)
-* appending to files: Temporary Output Files.
- (line 1007)
-* appending to files <1>: Batch Mode. (line 5954)
-* appending to files <2>: Filters for 'ncks'.
- (line 10555)
-* appending variables: Temporary Output Files.
- (line 1007)
-* appending variables <1>: Appending Variables.
- (line 1032)
-* appending variables <2>: ncap2 netCDF Arithmetic Processor.
- (line 6261)
-* appending variables <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10899)
-* AR4: nces netCDF Ensemble Statistics.
- (line 9542)
-* arccosine function: Intrinsic mathematical methods.
- (line 8693)
-* arcsine function: Intrinsic mathematical methods.
- (line 8693)
-* arctangent function: Intrinsic mathematical methods.
- (line 8693)
-* 'area': CF Conventions. (line 6033)
-* area-averaging: Annual Average over Regions.
- (line 12298)
-* arithmetic operators: Missing Values. (line 4028)
-* arithmetic operators <1>: Missing Values. (line 4081)
-* arithmetic operators <2>: ncwa netCDF Weighted Averager.
- (line 11457)
-* arithmetic processor: ncap2 netCDF Arithmetic Processor.
- (line 6228)
-* ARM conventions: ARM Conventions. (line 6165)
-* ARM conventions <1>: ncrcat netCDF Record Concatenator.
- (line 11170)
-* array: Arrays and hyperslabs.
- (line 6595)
-* 'array' function: Arrays and hyperslabs.
- (line 6595)
-* array indexing: Syntax of ncap2 statements.
- (line 6299)
-* array storage: Syntax of ncap2 statements.
- (line 6301)
-* array syntax: Syntax of ncap2 statements.
- (line 6297)
-* arrays: Arrays and hyperslabs.
- (line 6595)
-* arrival value: ncflint netCDF File Interpolator.
- (line 9858)
-* ASCII: ncatted netCDF Attribute Editor.
- (line 9103)
-* ASCII <1>: ncatted netCDF Attribute Editor.
- (line 9120)
-* ASIN: Intrinsic mathematical methods.
- (line 8693)
-* ASINH: Intrinsic mathematical methods.
- (line 8693)
-* 'asort': Sort methods. (line 7363)
-* assignment statement: Syntax of ncap2 statements.
- (line 6303)
-* asynchronous file access: Remote storage. (line 1827)
-* ATAN: Intrinsic mathematical methods.
- (line 8693)
-* ATANH: Intrinsic mathematical methods.
- (line 8693)
-* attribute inheritance: Attributes. (line 6770)
-* attribute names: ncatted netCDF Attribute Editor.
- (line 8926)
-* attribute names <1>: ncrename netCDF Renamer.
- (line 11211)
-* attribute propagation: Attributes. (line 6770)
-* attribute syntax: Syntax of ncap2 statements.
- (line 6313)
-* attribute, 'units': UDUnits Support. (line 3777)
-* attributes: ncatted netCDF Attribute Editor.
- (line 8926)
-* attributes, appending: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, creating: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, deleting: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, editing: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, editing <1>: Annual Average over Regions.
- (line 12298)
-* attributes, editing <2>: Regrid MODIS Data. (line 12753)
-* attributes, global: Large Numbers of Files.
- (line 1237)
-* attributes, global <1>: History Attribute. (line 5974)
-* attributes, global <2>: File List Attributes.
- (line 6002)
-* attributes, global <3>: ARM Conventions. (line 6189)
-* attributes, global <4>: ncatted netCDF Attribute Editor.
- (line 9002)
-* attributes, global <5>: ncatted netCDF Attribute Editor.
- (line 9170)
-* attributes, global <6>: ncks netCDF Kitchen Sink.
- (line 10006)
-* attributes, global <7>: ncks netCDF Kitchen Sink.
- (line 10040)
-* attributes, global <8>: Filters for 'ncks'.
- (line 10549)
-* attributes, global <9>: ncrename netCDF Renamer.
- (line 11283)
-* attributes, global <10>: ncrename netCDF Renamer.
- (line 11386)
-* attributes, modifying: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, modifying <1>: Annual Average over Regions.
- (line 12298)
-* attributes, modifying <2>: Regrid MODIS Data. (line 12753)
-* attributes, overwriting: ncatted netCDF Attribute Editor.
- (line 9019)
-* attributes, overwriting <1>: Annual Average over Regions.
- (line 12298)
-* attributes, overwriting <2>: Regrid MODIS Data. (line 12753)
-* attributes'ncap2': Attributes. (line 6737)
-* 'autoconf': Help Requests and Bug Reports.
- (line 888)
-* autoconversion: Autoconversion. (line 2314)
-* automagic: Compatability. (line 461)
-* automagic <1>: Large Numbers of Files.
- (line 1210)
-* automatic type conversion: Type Conversion. (line 5461)
-* automatic type conversion <1>: Intrinsic mathematical methods.
- (line 8763)
-* auxiliary coordinates: CF Conventions. (line 6111)
-* average: Operation Types. (line 5303)
-* average <1>: ncwa netCDF Weighted Averager.
- (line 11501)
-* average <2>: Daily data in one file.
- (line 11832)
-* average <3>: Daily data in one file.
- (line 11846)
-* average <4>: Monthly data in one file.
- (line 11866)
-* average <5>: Monthly data in one file.
- (line 11869)
-* average <6>: One time point one file.
- (line 11895)
-* average <7>: Global Distribution of Long-term Average.
- (line 12195)
-* average <8>: Annual Average over Regions.
- (line 12298)
-* average <9>: Monthly Cycle. (line 12589)
-* averaging data: Missing Values. (line 4022)
-* averaging data <1>: nces netCDF Ensemble Statistics.
- (line 9503)
-* averaging data <2>: ncra netCDF Record Averager.
- (line 11058)
-* averaging data <3>: ncwa netCDF Weighted Averager.
- (line 11425)
-* 'avg': Operation Types. (line 5303)
-* avg(): Methods and functions.
- (line 7038)
-* 'avgsqr': Operation Types. (line 5303)
-* Barry deFreese: Contributors. (line 11757)
-* 'base_time': ARM Conventions. (line 6165)
-* 'bash': Subsetting Files. (line 2643)
-* 'bash' <1>: Filters for 'ncks'.
- (line 10448)
-* Bash shell: ncbo netCDF Binary Operator.
- (line 9282)
-* Bash Shell: ncbo netCDF Binary Operator.
- (line 9451)
-* Bash shell <1>: Filters for 'ncks'.
- (line 10448)
-* batch mode: Batch Mode. (line 5954)
-* beer: Promoting Single-precision to Double.
- (line 5848)
-* benchmarks: OpenMP Threading. (line 1609)
-* Bessel function: GSL special functions.
- (line 7850)
-* bilinear interpolation: Regrid MODIS Data. (line 12753)
-* Bill Kocik: Contributors. (line 11741)
-* binary format: ncks netCDF Kitchen Sink.
- (line 10089)
-* binary operations: Memory for ncap2. (line 1443)
-* binary operations <1>: ncbo netCDF Binary Operator.
- (line 9235)
-* binary Operators: Expressions. (line 6400)
-* bitmask: Compression. (line 4538)
-* blank: ncks netCDF Kitchen Sink.
- (line 10293)
-* blocksize: Chunking. (line 4156)
-* 'bounds' attribute: Compression. (line 4522)
-* 'bounds' attribute <1>: CF Conventions. (line 6088)
-* 'bounds' attribute <2>: Filters for 'ncks'.
- (line 10640)
-* bounds convention: CF Conventions. (line 6088)
-* Bourne Shell: Stride. (line 3323)
-* Bourne Shell <1>: ncbo netCDF Binary Operator.
- (line 9451)
-* Brian Mays: Contributors. (line 11737)
-* broadcasting: ncbo netCDF Binary Operator.
- (line 9388)
-* broadcasting groups: netCDF2/3/4 and HDF4/5 Support.
- (line 667)
-* broadcasting groups <1>: ncbo netCDF Binary Operator.
- (line 9367)
-* broadcasting groups <2>: ncbo netCDF Binary Operator.
- (line 9416)
-* broadcasting variables: Expressions. (line 6349)
-* broadcasting variables <1>: ncbo netCDF Binary Operator.
- (line 9324)
-* broadcasting variables <2>: ncbo netCDF Binary Operator.
- (line 9326)
-* broadcasting variables <3>: ncflint netCDF File Interpolator.
- (line 9956)
-* broadcasting variables <4>: ncwa netCDF Weighted Averager.
- (line 11425)
-* 'BSD': Command Line Options.
- (line 1628)
-* Buffer sizes: Buffer sizes. (line 5048)
-* buffering: Performance. (line 1481)
-* bugs, reporting: Help Requests and Bug Reports.
- (line 825)
-* Burrows-Wheeler algorithm: Compression. (line 4788)
-* byte(): Methods and functions.
- (line 7136)
-* 'bzip2': Compression. (line 4788)
-* C index convention: C and Fortran Index Conventions.
- (line 3129)
-* C language: Compatability. (line 443)
-* C language <1>: Missing Values. (line 4070)
-* C language <2>: Automatic type conversion.
- (line 5590)
-* C language <3>: Promoting Single-precision to Double.
- (line 5609)
-* C language <4>: Syntax of ncap2 statements.
- (line 6291)
-* C language <5>: Expressions. (line 6320)
-* C language <6>: ncatted netCDF Attribute Editor.
- (line 9129)
-* C language <7>: ncks netCDF Kitchen Sink.
- (line 10338)
-* C Shell: Stride. (line 3323)
-* C Shell <1>: ncbo netCDF Binary Operator.
- (line 9451)
-* 'c++': Compatability. (line 408)
-* C++: Compatability. (line 413)
-* C89: Compatability. (line 421)
-* C89 <1>: Compatability. (line 445)
-* C99: Compatability. (line 425)
-* C99 <1>: Compatability. (line 445)
-* C99 <2>: Windows Operating System.
- (line 496)
-* C99 <3>: Compression. (line 4554)
-* CAM: Compression. (line 4899)
-* CAM3: Promoting Single-precision to Double.
- (line 5748)
-* 'CC': Compatability. (line 408)
-* 'cc': Compatability. (line 408)
-* CCM Processor: Specifying Input Files.
- (line 1687)
-* CCM Processor <1>: ncra netCDF Record Averager.
- (line 11098)
-* CCM Processor <2>: ncrcat netCDF Record Concatenator.
- (line 11176)
-* CCSM: Proposals for Institutional Funding.
- (line 11802)
-* CCSM <1>: CCSM Example. (line 12992)
-* CCSM conventions: CF Conventions. (line 6033)
-* CDL: ncks netCDF Kitchen Sink.
- (line 10144)
-* CEIL: Intrinsic mathematical methods.
- (line 8693)
-* ceiling function: Intrinsic mathematical methods.
- (line 8693)
-* cell methods convention: CF Conventions. (line 6122)
-* cell-based grids: Auxiliary Coordinates.
- (line 3684)
-* 'cell_methods': CF Conventions. (line 6122)
-* CF compliance checker: Checking CF-compliance.
- (line 2976)
-* CF conventions: Subsetting Coordinate Variables.
- (line 2684)
-* CF conventions <1>: Auxiliary Coordinates.
- (line 3667)
-* CF conventions <2>: UDUnits Support. (line 3875)
-* CF conventions <3>: Compression. (line 4522)
-* CF conventions <4>: CF Conventions. (line 6033)
-* CF conventions <5>: ncbo netCDF Binary Operator.
- (line 9360)
-* CF conventions <6>: Filters for 'ncks'.
- (line 10640)
-* cfchecker: Checking CF-compliance.
- (line 2976)
-* 'change_miss()': Missing values ncap2.
- (line 6975)
-* char(): Methods and functions.
- (line 7138)
-* characters, special: ncatted netCDF Attribute Editor.
- (line 9105)
-* Charlie Zender: Foreword. (line 209)
-* Charlie Zender <1>: Contributors. (line 11712)
-* chocolate: Contributing. (line 11691)
-* Chris Barker: Chunking. (line 4258)
-* chunking: netCDF2/3/4 and HDF4/5 Support.
- (line 655)
-* chunking <1>: Chunking. (line 4135)
-* chunking <2>: ncks netCDF Kitchen Sink.
- (line 10284)
-* chunking map: Chunking. (line 4156)
-* chunking map <1>: Chunking. (line 4252)
-* chunking policy: Chunking. (line 4156)
-* chunksize: Chunking. (line 4156)
-* citation: Citation. (line 11783)
-* 'clang': Compatability. (line 408)
-* 'CLASSIC' files: File Formats and Conversion.
- (line 2121)
-* client-server: OPeNDAP. (line 1941)
-* Climate and Forecast Metadata Convention: UDUnits Support.
- (line 3875)
-* climate model: Philosophy. (line 907)
-* climate model <1>: Climate Model Paradigm.
- (line 933)
-* climate model <2>: Concatenation. (line 1132)
-* climate model <3>: Specifying Input Files.
- (line 1753)
-* climate model <4>: ncecat netCDF Ensemble Concatenator.
- (line 9754)
-* climate model <5>: Normalization and Integration.
- (line 11611)
-* climate model <6>: Normalization and Integration.
- (line 11622)
-* clipping operators: Expressions. (line 6472)
-* CMIP: nces netCDF Ensemble Statistics.
- (line 9542)
-* CMIP <1>: ncecat netCDF Ensemble Concatenator.
- (line 9698)
-* CMIP5: CMIP5 Example. (line 11921)
-* 'cnk_all': Chunking. (line 4189)
-* 'cnk_dmn': Chunking. (line 4258)
-* 'cnk_g2d': Chunking. (line 4189)
-* 'cnk_g3d': Chunking. (line 4189)
-* 'cnk_lfp': Chunking. (line 4258)
-* CNK_MAP: Chunking. (line 4252)
-* 'cnk_nc4': Chunking. (line 4258)
-* 'cnk_prd': Chunking. (line 4258)
-* 'cnk_r1d': Chunking. (line 4189)
-* 'cnk_rd1': Chunking. (line 4258)
-* 'cnk_rew': Chunking. (line 4258)
-* 'cnk_scl': Chunking. (line 4258)
-* 'cnk_xpl': Chunking. (line 4189)
-* 'cnk_xst': Chunking. (line 4189)
-* 'cnk_xst' <1>: Chunking. (line 4258)
-* Comeau: Compatability. (line 389)
-* command line options: Command Line Options.
- (line 1614)
-* command line switches: Philosophy. (line 923)
-* command line switches <1>: Shared features. (line 1507)
-* command line switches <2>: Specifying Output Files.
- (line 1795)
-* command line switches <3>: Reference Manual. (line 6218)
-* comments: Syntax of ncap2 statements.
- (line 6305)
-* 'como': Compatability. (line 408)
-* Compaq: Compatability. (line 389)
-* comparator: Mask condition. (line 11527)
-* compatability: Compatability. (line 389)
-* compilers: Specifying Output Files.
- (line 1817)
-* complementary error function: Intrinsic mathematical methods.
- (line 8693)
-* compliance checker: Checking CF-compliance.
- (line 2976)
-* compression: Deflation. (line 4938)
-* compression <1>: ncks netCDF Kitchen Sink.
- (line 10284)
-* concatenation: Appending Variables.
- (line 1032)
-* concatenation <1>: ncecat netCDF Ensemble Concatenator.
- (line 9658)
-* concatenation <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10857)
-* concatenation <3>: ncrcat netCDF Record Concatenator.
- (line 11129)
-* conditional Operator: Expressions. (line 6462)
-* 'config.guess': Help Requests and Bug Reports.
- (line 888)
-* 'configure.eg': Help Requests and Bug Reports.
- (line 888)
-* constraint expressions: OPeNDAP. (line 2067)
-* contents: How to Use This guide.
- (line 356)
-* contributing: Contributing. (line 11680)
-* contributors: Contributors. (line 11711)
-* coordinate limits: Hyperslabs. (line 3166)
-* coordinate variable: UDUnits Support. (line 3811)
-* coordinate variable <1>: Operation Types. (line 5333)
-* coordinate variable <2>: CF Conventions. (line 6111)
-* coordinate variable <3>: ncbo netCDF Binary Operator.
- (line 9357)
-* coordinate variable <4>: ncwa netCDF Weighted Averager.
- (line 11493)
-* coordinate variables: ncrename netCDF Renamer.
- (line 11336)
-* 'coordinates': Auxiliary Coordinates.
- (line 3667)
-* 'coordinates' <1>: CF Conventions. (line 6111)
-* coordinates: Add Coordinates to MODIS Data.
- (line 12891)
-* 'coordinates' attribute: Compression. (line 4522)
-* 'coordinates' attribute <1>: Filters for 'ncks'.
- (line 10640)
-* coordinates convention: CF Conventions. (line 6111)
-* coordinates, modifying: Permute MODIS Coordinates.
- (line 12939)
-* core dump: Help Requests and Bug Reports.
- (line 825)
-* 'core dump': Large Datasets. (line 1324)
-* 'core dump' <1>: Filters for 'ncks'.
- (line 10637)
-* COS: Intrinsic mathematical methods.
- (line 8693)
-* COSH: Intrinsic mathematical methods.
- (line 8693)
-* cosine function: Intrinsic mathematical methods.
- (line 8693)
-* covariance: Examples ncap2. (line 8620)
-* 'cp': Subsetting Files. (line 2467)
-* Cray: Compatability. (line 389)
-* Cray <1>: Large Datasets. (line 1324)
-* 'csh': Subsetting Files. (line 2643)
-* Csh shell: Filters for 'ncks'.
- (line 10448)
-* 'cxx': Compatability. (line 408)
-* Cygwin: Windows Operating System.
- (line 504)
-* Cygwin <1>: Symbolic Links. (line 540)
-* C_FORMAT: Performance. (line 1490)
-* daily data: Daily data in one file.
- (line 11829)
-* daily data <1>: One time point one file.
- (line 11895)
-* daily data <2>: Multiple files with multiple time points.
- (line 11913)
-* Daniel Baumann: Contributors. (line 11757)
-* Daniel Wang: Contributors. (line 11729)
-* DAP: OPeNDAP. (line 1941)
-* data access protocol: OPeNDAP. (line 1941)
-* data safety: Temporary Output Files.
- (line 944)
-* data safety <1>: ncrename netCDF Renamer.
- (line 11255)
-* data, missing: Missing Values. (line 4022)
-* data, missing <1>: ncatted netCDF Attribute Editor.
- (line 8958)
-* 'date': CF Conventions. (line 6033)
-* 'datesec': CF Conventions. (line 6033)
-* DBG_LVL: Help Requests and Bug Reports.
- (line 880)
-* DBG_LVL <1>: Large Datasets. (line 1343)
-* DBG_LVL <2>: OpenMP Threading. (line 1598)
-* DDRA: Proposals for Institutional Funding.
- (line 11802)
-* Debian: netCDF2/3/4 and HDF4/5 Support.
- (line 760)
-* DEBUG-LEVEL: Help Requests and Bug Reports.
- (line 880)
-* DEBUG-LEVEL <1>: Large Datasets. (line 1343)
-* debugging: Help Requests and Bug Reports.
- (line 865)
-* debugging <1>: Large Datasets. (line 1343)
-* debugging <2>: OpenMP Threading. (line 1598)
-* DEC: Compatability. (line 389)
-* Decimal Significant Digits: Compression. (line 4491)
-* 'defdim()': Dimensions. (line 6493)
-* defining dimensions in 'ncap2': Dimensions. (line 6493)
-* DEFLATE: Compression. (line 4619)
-* deflation: netCDF2/3/4 and HDF4/5 Support.
- (line 651)
-* deflation <1>: Deflation. (line 4938)
-* deflation <2>: ncks netCDF Kitchen Sink.
- (line 10284)
-* degenerate dimension: Chunking. (line 4252)
-* degenerate dimension <1>: Operation Types. (line 5377)
-* degenerate dimension <2>: Examples ncap2. (line 8668)
-* degenerate dimension <3>: ncbo netCDF Binary Operator.
- (line 9351)
-* degenerate dimension <4>: ncecat netCDF Ensemble Concatenator.
- (line 9807)
-* degenerate dimension <5>: ncflint netCDF File Interpolator.
- (line 9869)
-* degenerate dimension <6>: ncpdq netCDF Permute Dimensions Quickly.
- (line 11019)
-* degenerate dimension <7>: ncra netCDF Record Averager.
- (line 11071)
-* degenerate dimension <8>: ncwa netCDF Weighted Averager.
- (line 11445)
-* degenerate dimension <9>: Normalization and Integration.
- (line 11602)
-* delete (groups): Flattening Groups. (line 2736)
-* 'delete_miss()': Missing values ncap2.
- (line 6985)
-* demotion: Type Conversion. (line 5461)
-* Dennis Heimbigner: Contributors. (line 11703)
-* derived fields: ncap2 netCDF Arithmetic Processor.
- (line 6253)
-* derived fields <1>: ncap2 netCDF Arithmetic Processor.
- (line 6265)
-* digest: MD5 digests. (line 4978)
-* Digital: Compatability. (line 389)
-* dimension limits: Hyperslabs. (line 3166)
-* dimension names: ncrename netCDF Renamer.
- (line 11211)
-* dimension order: Annual Average over Regions.
- (line 12298)
-* dimensions, growing: Examples ncap2. (line 8590)
-* disaggregate: Dismembering Files.
- (line 2869)
-* disjoint files: Appending Variables.
- (line 1054)
-* diskless files: RAM disks. (line 5079)
-* dismember: Dismembering Files.
- (line 2869)
-* Distributed Data Reduction & Analysis: Proposals for Institutional Funding.
- (line 11802)
-* Distributed Oceanographic Data System: OPeNDAP. (line 1941)
-* 'divide': ncbo netCDF Binary Operator.
- (line 9253)
-* dividing data: ncbo netCDF Binary Operator.
- (line 9235)
-* division: Intrinsic mathematical methods.
- (line 8690)
-* 'dmn': Chunking. (line 4258)
-* documentation: Availability. (line 316)
-* DODS: OPeNDAP. (line 1941)
-* DODS <1>: Retaining Retrieved Files.
- (line 2109)
-* 'DODS_ROOT': OPeNDAP. (line 1941)
-* dot product: Normalization and Integration.
- (line 11548)
-* dot product <1>: Normalization and Integration.
- (line 11567)
-* double(): Methods and functions.
- (line 7147)
-* double-precision: Intrinsic mathematical methods.
- (line 8796)
-* DSD: Compression. (line 4491)
-* 'dsort': Sort methods. (line 7363)
-* duration: Subcycle. (line 3397)
-* dynamic linking: Libraries. (line 566)
-* Ed Hartnett: Contributors. (line 11703)
-* Ed Hill: Contributors. (line 11759)
-* eddy covariance: Examples ncap2. (line 8626)
-* editing attributes: ncatted netCDF Attribute Editor.
- (line 8926)
-* 'egrep': Subsetting Files. (line 2568)
-* Elliptic integrals: GSL special functions.
- (line 7870)
-* ensemble: Concatenation. (line 1132)
-* ensemble <1>: nces netCDF Ensemble Statistics.
- (line 9519)
-* ensemble average: nces netCDF Ensemble Statistics.
- (line 9503)
-* ensemble concatenation: ncecat netCDF Ensemble Concatenator.
- (line 9658)
-* ERF: Intrinsic mathematical methods.
- (line 8693)
-* ERFC: Intrinsic mathematical methods.
- (line 8693)
-* Eric Blake: Contributors. (line 11767)
-* error function: Intrinsic mathematical methods.
- (line 8693)
-* error tolerance: Temporary Output Files.
- (line 944)
-* Etienne Tourigny: Contributors. (line 11773)
-* exclusion: Subsetting Files. (line 2410)
-* exclusion <1>: Filters for 'ncks'.
- (line 10549)
-* exclusion <2>: Filters for 'ncks'.
- (line 10640)
-* execution time: Libraries. (line 567)
-* execution time <1>: Temporary Output Files.
- (line 959)
-* execution time <2>: Performance. (line 1482)
-* execution time <3>: Metadata Optimization.
- (line 1527)
-* execution time <4>: Missing Values. (line 4081)
-* execution time <5>: ncatted netCDF Attribute Editor.
- (line 8949)
-* execution time <6>: ncrename netCDF Renamer.
- (line 11270)
-* EXP: Intrinsic mathematical methods.
- (line 8693)
-* exponent: Promoting Single-precision to Double.
- (line 5826)
-* exponentiation: Intrinsic mathematical methods.
- (line 8690)
-* exponentiation function: Intrinsic mathematical methods.
- (line 8693)
-* expressions: Expressions. (line 6315)
-* extended file format: Determining File Format.
- (line 2216)
-* extended regular expressions: Large Numbers of Files.
- (line 1245)
-* extended regular expressions <1>: Subsetting Files. (line 2568)
-* extended regular expressions <2>: Examples ncap2. (line 8645)
-* extended regular expressions <3>: ncatted netCDF Attribute Editor.
- (line 8980)
-* extended regular expressions <4>: ncatted netCDF Attribute Editor.
- (line 9188)
-* extraction: Subsetting Files. (line 2410)
-* extraction <1>: Filters for 'ncks'.
- (line 10549)
-* extraction <2>: Filters for 'ncks'.
- (line 10640)
-* 'f90': Windows Operating System.
- (line 504)
-* features, requesting: Help Requests and Bug Reports.
- (line 825)
-* File buffers: Buffer sizes. (line 5048)
-* file combination: Combine Files. (line 11965)
-* file deletion: Retaining Retrieved Files.
- (line 2081)
-* file multiplication: ncflint netCDF File Interpolator.
- (line 9945)
-* file removal: Retaining Retrieved Files.
- (line 2081)
-* file retention: Retaining Retrieved Files.
- (line 2081)
-* files, multiple: Specifying Input Files.
- (line 1724)
-* files, numerous input: Large Numbers of Files.
- (line 1209)
-* Filipe Fernandes: Contributors. (line 11763)
-* filters: Filters for 'ncks'.
- (line 10448)
-* findgen-equivalent: Arrays and hyperslabs.
- (line 6595)
-* fix record dimension: ncecat netCDF Ensemble Concatenator.
- (line 9702)
-* fix record dimension <1>: ncecat netCDF Ensemble Concatenator.
- (line 9802)
-* fix record dimension <2>: ncks netCDF Kitchen Sink.
- (line 10184)
-* fixed dimension: ncecat netCDF Ensemble Concatenator.
- (line 9702)
-* fixed dimension <1>: ncecat netCDF Ensemble Concatenator.
- (line 9802)
-* fixed dimension <2>: ncks netCDF Kitchen Sink.
- (line 10105)
-* fixed dimension <3>: ncks netCDF Kitchen Sink.
- (line 10184)
-* flags: Examples ncap2. (line 8604)
-* flatten (groups): Flattening Groups. (line 2736)
-* flattening: Autoconversion. (line 2352)
-* 'float': Intrinsic mathematical methods.
- (line 8796)
-* float(): Methods and functions.
- (line 7144)
-* FLOOR: Intrinsic mathematical methods.
- (line 8693)
-* floor function: Intrinsic mathematical methods.
- (line 8693)
-* 'flt_byt': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'flt_sht': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* for(): Loops. (line 7308)
-* force append: Batch Mode. (line 5954)
-* force overwrite: Batch Mode. (line 5954)
-* foreword: Foreword. (line 209)
-* Fortran: Promoting Single-precision to Double.
- (line 5609)
-* Fortran <1>: ncra netCDF Record Averager.
- (line 11106)
-* Fortran <2>: ncrcat netCDF Record Concatenator.
- (line 11183)
-* Fortran index convention: C and Fortran Index Conventions.
- (line 3129)
-* FORTRAN_FORMAT: Performance. (line 1490)
-* Francesco Lovergine: Contributors. (line 11757)
-* 'ftp': Windows Operating System.
- (line 510)
-* 'ftp' <1>: Remote storage. (line 1827)
-* FTP: Retaining Retrieved Files.
- (line 2098)
-* funding: Proposals for Institutional Funding.
- (line 11802)
-* 'g++': Compatability. (line 408)
-* 'g++' <1>: Windows Operating System.
- (line 524)
-* 'g2d': Chunking. (line 4189)
-* 'g3d': Chunking. (line 4189)
-* GAG: ncecat netCDF Ensemble Concatenator.
- (line 9710)
-* GAMMA: Compatability. (line 459)
-* GAMMA <1>: Intrinsic mathematical methods.
- (line 8693)
-* gamma function: GSL special functions.
- (line 7836)
-* gamma function <1>: Intrinsic mathematical methods.
- (line 8693)
-* Gary Strand: Contributors. (line 11755)
-* Gaussian weights: Normalization and Integration.
- (line 11611)
-* Gavin Burris: Contributors. (line 11769)
-* Gayathri Venkitachalam: Contributors. (line 11751)
-* 'gcc': Compatability. (line 408)
-* 'gcc' <1>: Windows Operating System.
- (line 524)
-* GCM: Climate Model Paradigm.
- (line 933)
-* GCM <1>: Compression. (line 4899)
-* GCM <2>: Promoting Single-precision to Double.
- (line 5748)
-* geographical weight: Monthly Cycle. (line 12589)
-* George Shapavalov: Contributors. (line 11761)
-* George Shapovalov: Contributors. (line 11739)
-* George White: Contributors. (line 11755)
-* 'gethostname': Windows Operating System.
- (line 508)
-* 'getopt': Command Line Options.
- (line 1628)
-* 'getopt.h': Command Line Options.
- (line 1628)
-* 'getopt_long': Command Line Options.
- (line 1628)
-* 'getuid': Windows Operating System.
- (line 508)
-* 'get_miss()': Missing values ncap2.
- (line 6980)
-* Glenn Davis: Contributors. (line 11703)
-* 'global' attribute: ncatted netCDF Attribute Editor.
- (line 9170)
-* 'global' attribute <1>: ncrename netCDF Renamer.
- (line 11283)
-* global attributes: Large Numbers of Files.
- (line 1237)
-* global attributes <1>: History Attribute. (line 5974)
-* global attributes <2>: File List Attributes.
- (line 6002)
-* global attributes <3>: ARM Conventions. (line 6189)
-* global attributes <4>: ncatted netCDF Attribute Editor.
- (line 9002)
-* global attributes <5>: ncatted netCDF Attribute Editor.
- (line 9170)
-* global attributes <6>: ncks netCDF Kitchen Sink.
- (line 10006)
-* global attributes <7>: ncks netCDF Kitchen Sink.
- (line 10040)
-* global attributes <8>: Filters for 'ncks'.
- (line 10549)
-* global attributes <9>: ncrename netCDF Renamer.
- (line 11283)
-* global attributes <10>: ncrename netCDF Renamer.
- (line 11386)
-* globbing: Large Numbers of Files.
- (line 1245)
-* globbing <1>: Specifying Input Files.
- (line 1687)
-* globbing <2>: Subsetting Files. (line 2643)
-* globbing <3>: Examples ncap2. (line 8645)
-* globbing <4>: ncbo netCDF Binary Operator.
- (line 9283)
-* globbing <5>: ncra netCDF Record Averager.
- (line 11098)
-* globbing <6>: ncrcat netCDF Record Concatenator.
- (line 11176)
-* GNU: Command Line Options.
- (line 1615)
-* GNU <1>: Subsetting Files. (line 2568)
-* 'gnu-win32': Windows Operating System.
- (line 504)
-* GNU/Linux: Large Datasets. (line 1324)
-* 'GNUmakefile': Windows Operating System.
- (line 504)
-* God: UDUnits Support. (line 3921)
-* GODAD: CMIP5 Example. (line 11921)
-* 'grep -E': Subsetting Files. (line 2568)
-* group aggregation: ncecat netCDF Ensemble Concatenator.
- (line 9710)
-* group aggregation <1>: Combine Files. (line 12071)
-* group attributes: ncrename netCDF Renamer.
- (line 11386)
-* group names: ncrename netCDF Renamer.
- (line 11211)
-* group path: Group Path Editing.
- (line 2714)
-* group, aggregation: Annual Average over Regions.
- (line 12523)
-* group, anomaly: Annual Average over Regions.
- (line 12523)
-* group, dimension permutation: Annual Average over Regions.
- (line 12523)
-* group, spatial averaging: Annual Average over Regions.
- (line 12523)
-* group, standard deviation: Annual Average over Regions.
- (line 12523)
-* group, temporal averaging: Annual Average over Regions.
- (line 12523)
-* groups: netCDF2/3/4 and HDF4/5 Support.
- (line 660)
-* groups <1>: ncatted netCDF Attribute Editor.
- (line 9195)
-* groups, averaging: Global Distribution of Long-term Average.
- (line 12276)
-* groups, creating: Combine Files. (line 12071)
-* groups, moving: Moving Groups. (line 2826)
-* groups, renaming: Moving Groups. (line 2826)
-* growing dimensions: Examples ncap2. (line 8590)
-* GSL: Compatability. (line 452)
-* GSL <1>: GSL special functions.
- (line 7821)
-* GSL <2>: GSL interpolation. (line 8213)
-* GSL_SF_BESSEL_JN: GSL special functions.
- (line 7850)
-* GSL_SF_GAMMA: GSL special functions.
- (line 7836)
-* gsl_sf_legendre_Pl: GSL special functions.
- (line 7905)
-* 'gunzip': Compression. (line 4619)
-* 'gw': CF Conventions. (line 6033)
-* 'gw' <1>: Normalization and Integration.
- (line 11611)
-* 'gzip': Compression. (line 4427)
-* 'gzip' <1>: Compression. (line 4619)
-* H4CF: netCDF2/3/4 and HDF4/5 Support.
- (line 751)
-* 'h4tonccf': netCDF2/3/4 and HDF4/5 Support.
- (line 751)
-* Harry Mangalam: Contributors. (line 11732)
-* hash: MD5 digests. (line 4978)
-* HDF: netCDF2/3/4 and HDF4/5 Support.
- (line 603)
-* HDF <1>: File Formats and Conversion.
- (line 2121)
-* HDF <2>: ncks netCDF Kitchen Sink.
- (line 10144)
-* HDF <3>: Proposals for Institutional Funding.
- (line 11809)
-* HDF unpacking: Packed data. (line 5235)
-* HDF4: netCDF2/3/4 and HDF4/5 Support.
- (line 680)
-* HDF4 <1>: ncks netCDF Kitchen Sink.
- (line 10144)
-* 'HDF4_UNKNOWN': netCDF2/3/4 and HDF4/5 Support.
- (line 699)
-* HDF5: netCDF2/3/4 and HDF4/5 Support.
- (line 617)
-* HDF5 <1>: netCDF2/3/4 and HDF4/5 Support.
- (line 673)
-* HDF5 <2>: Compression. (line 4619)
-* 'hdf_name': netCDF2/3/4 and HDF4/5 Support.
- (line 742)
-* 'hdp': ncks netCDF Kitchen Sink.
- (line 10144)
-* help: Help Requests and Bug Reports.
- (line 825)
-* Henry Butowsky: Contributors. (line 11718)
-* 'hgh_byt': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'hgh_sht': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* hidden attributes: ncks netCDF Kitchen Sink.
- (line 10130)
-* hidden features: ncks netCDF Kitchen Sink.
- (line 10342)
-* Hierarchical Data Format: netCDF2/3/4 and HDF4/5 Support.
- (line 603)
-* 'history': Large Numbers of Files.
- (line 1289)
-* 'history' <1>: Remote storage. (line 1827)
-* 'history' <2>: History Attribute. (line 5974)
-* 'history' <3>: ARM Conventions. (line 6189)
-* 'history' <4>: ncatted netCDF Attribute Editor.
- (line 8944)
-* 'history' <5>: Filters for 'ncks'.
- (line 10541)
-* 'hncgen': ncks netCDF Kitchen Sink.
- (line 10144)
-* HP: Compatability. (line 389)
-* HPSS: Remote storage. (line 1867)
-* 'hsi': Remote storage. (line 1867)
-* HTML: Availability. (line 316)
-* HTTP protocol: OPeNDAP. (line 1941)
-* Huffman coding: Compression. (line 4427)
-* 'hyai': CF Conventions. (line 6033)
-* 'hyam': CF Conventions. (line 6033)
-* 'hybi': CF Conventions. (line 6033)
-* 'hybm': CF Conventions. (line 6033)
-* hybrid coordinate system: Left hand casting. (line 6549)
-* hyperbolic arccosine function: Intrinsic mathematical methods.
- (line 8693)
-* hyperbolic arcsine function: Intrinsic mathematical methods.
- (line 8693)
-* hyperbolic arctangent function: Intrinsic mathematical methods.
- (line 8693)
-* hyperbolic cosine function: Intrinsic mathematical methods.
- (line 8693)
-* hyperbolic sine function: Intrinsic mathematical methods.
- (line 8693)
-* hyperbolic tangent: Intrinsic mathematical methods.
- (line 8693)
-* hyperslab: Hyperslabs. (line 3166)
-* hyperslab <1>: Chunking. (line 4174)
-* hyperslab <2>: nces netCDF Ensemble Statistics.
- (line 9537)
-* hyperslab <3>: ncecat netCDF Ensemble Concatenator.
- (line 9696)
-* hyperslab <4>: ncra netCDF Record Averager.
- (line 11082)
-* hyperslab <5>: ncrcat netCDF Record Concatenator.
- (line 11152)
-* hyperslab <6>: ncwa netCDF Weighted Averager.
- (line 11457)
-* hyperslabs: Arrays and hyperslabs.
- (line 6622)
-* I/O: OPeNDAP. (line 2013)
-* I/O <1>: C and Fortran Index Conventions.
- (line 3133)
-* I/O <2>: Multislabs. (line 3523)
-* I/O block size: Buffer sizes. (line 5048)
-* I18N: Internationalization.
- (line 1516)
-* IBM: Compatability. (line 389)
-* 'icc': Compatability. (line 408)
-* ID Quoting: ID Quoting. (line 8861)
-* IDL: Philosophy. (line 916)
-* IEEE: Compression. (line 4554)
-* IEEE <1>: Automatic type conversion.
- (line 5567)
-* IEEE 754: Compression. (line 4538)
-* IEEE NaN: ncatted netCDF Attribute Editor.
- (line 9151)
-* if(): if statement. (line 6841)
-* 'ilimit': Large Datasets. (line 1334)
-* illegal names: netCDF2/3/4 and HDF4/5 Support.
- (line 742)
-* implicit conversion: Promoting Single-precision to Double.
- (line 5597)
-* 'include': Include files. (line 7348)
-* including files: Syntax of ncap2 statements.
- (line 6308)
-* index convention: C and Fortran Index Conventions.
- (line 3129)
-* indgen-equivalent: Arrays and hyperslabs.
- (line 6595)
-* inexact conversion: Intrinsic mathematical methods.
- (line 8760)
-* Info: Availability. (line 316)
-* input files: Large Numbers of Files.
- (line 1263)
-* input files <1>: Specifying Input Files.
- (line 1687)
-* input files <2>: Specifying Output Files.
- (line 1795)
-* input files <3>: Specifying Output Files.
- (line 1812)
-* INPUT-PATH: Specifying Input Files.
- (line 1687)
-* INPUT-PATH <1>: Remote storage. (line 1890)
-* installation: Compatability. (line 389)
-* installation <1>: Help Requests and Bug Reports.
- (line 888)
-* int(): Methods and functions.
- (line 7142)
-* int64(): Methods and functions.
- (line 7157)
-* integration: Normalization and Integration.
- (line 11548)
-* integrity: MD5 digests. (line 4978)
-* Intel: Compatability. (line 389)
-* Internationalization: Internationalization.
- (line 1516)
-* interoperability: Packed data. (line 5235)
-* interpolation: ncflint netCDF File Interpolator.
- (line 9818)
-* interpolation <1>: Regrid MODIS Data. (line 12753)
-* intersection: Subsetting Files. (line 2410)
-* intersection <1>: Subsetting Files. (line 2516)
-* introduction: Introduction. (line 305)
-* introduction <1>: How to Use This guide.
- (line 356)
-* 'invert_map': Sort methods. (line 7363)
-* IPCC: nces netCDF Ensemble Statistics.
- (line 9542)
-* IPCC <1>: Proposals for Institutional Funding.
- (line 11802)
-* irregular grids: Irregular grids. (line 7608)
-* ISO: Compatability. (line 413)
-* James Gallagher: Contributors. (line 11703)
-* Jim Edwards: Contributors. (line 11745)
-* Joe Hamman: Contributors. (line 11727)
-* John Caron: Contributors. (line 11703)
-* Juliana Rew: Contributors. (line 11747)
-* Karen Schuchardt: Contributors. (line 11749)
-* Keith Lindsay: Contributors. (line 11755)
-* kitchen sink: ncks netCDF Kitchen Sink.
- (line 9971)
-* Kyle Wilcox: Contributors. (line 11769)
-* L10N: Internationalization.
- (line 1517)
-* large datasets: Large Datasets. (line 1306)
-* large datasets <1>: OpenMP Threading. (line 1576)
-* Large File Support: Large Datasets. (line 1306)
-* Large File Support <1>: Large File Support.
- (line 2376)
-* 'lat_bnds': CF Conventions. (line 6033)
-* 'LD_LIBRARY_PATH': Libraries. (line 566)
-* Least Significant Digit: Compression. (line 4469)
-* 'least_significant_digit': Compression. (line 4652)
-* left hand casting: Memory for ncap2. (line 1443)
-* left hand casting <1>: Left hand casting. (line 6549)
-* Legendre polynomial: GSL special functions.
- (line 7905)
-* Lempel-Ziv deflation: Deflation. (line 4938)
-* Len Makin: Contributors. (line 11743)
-* lexer: ncap2 netCDF Arithmetic Processor.
- (line 6228)
-* 'lfp': Chunking. (line 4258)
-* LFS: Large Datasets. (line 1306)
-* LFS <1>: Large File Support.
- (line 2376)
-* LHS: Left hand casting. (line 6549)
-* 'libnco': Compatability. (line 413)
-* libraries: Libraries. (line 566)
-* linkers: Specifying Output Files.
- (line 1817)
-* Linux: Intrinsic mathematical methods.
- (line 8798)
-* LLVM: Compatability. (line 411)
-* LN: Intrinsic mathematical methods.
- (line 8693)
-* 'ln -s': ncbo netCDF Binary Operator.
- (line 9297)
-* 'ln -s' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10777)
-* LOG: Intrinsic mathematical methods.
- (line 8693)
-* LOG10: Intrinsic mathematical methods.
- (line 8693)
-* logarithm, base 10: Intrinsic mathematical methods.
- (line 8693)
-* logarithm, natural: Intrinsic mathematical methods.
- (line 8693)
-* 'long double': Intrinsic mathematical methods.
- (line 8796)
-* long options: Command Line Options.
- (line 1627)
-* long options <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10951)
-* long-term average: Global Distribution of Long-term Average.
- (line 12195)
-* longitude: Wrapped Coordinates.
- (line 3617)
-* 'lon_bnds': CF Conventions. (line 6033)
-* Lori Sentman: Contributors. (line 11755)
-* lossy compression: Compression. (line 4427)
-* 'lrint()'.: Automatic type conversion.
- (line 5567)
-* 'lround()'.: Automatic type conversion.
- (line 5559)
-* LSD: Compression. (line 4469)
-* Luk Claes: Contributors. (line 11757)
-* 'mabs': Operation Types. (line 5303)
-* mabs(): Methods and functions.
- (line 7048)
-* Macintosh: Compatability. (line 389)
-* 'Makefile': Compatability. (line 418)
-* 'Makefile' <1>: Windows Operating System.
- (line 504)
-* 'Makefile' <2>: OPeNDAP. (line 1953)
-* malloc(): Memory for ncap2. (line 1452)
-* mantissa: Promoting Single-precision to Double.
- (line 5826)
-* manual type conversion: Type Conversion. (line 5461)
-* 'map_dmn': Chunking. (line 4258)
-* 'map_lfp': Chunking. (line 4258)
-* 'map_nc4': Chunking. (line 4258)
-* 'map_prd': Chunking. (line 4258)
-* 'map_rd1': Chunking. (line 4258)
-* 'map_rew': Chunking. (line 4258)
-* 'map_scl': Chunking. (line 4258)
-* 'map_xst': Chunking. (line 4258)
-* Mark Flanner: Contributors. (line 11755)
-* Markus Liebig: Contributors. (line 11755)
-* Martin Dix: Contributors. (line 11755)
-* Martin Otte: Contributors. (line 11773)
-* Martin Schmidt: Contributors. (line 11755)
-* Martin Schultz: Checking CF-compliance.
- (line 2976)
-* mask: Irregular grids. (line 7608)
-* mask <1>: Examples ncap2. (line 8613)
-* mask condition: Mask condition. (line 11519)
-* mask condition <1>: Normalization and Integration.
- (line 11650)
-* masked average: ncwa netCDF Weighted Averager.
- (line 11425)
-* Mass Store System: Remote storage. (line 1827)
-* Matej Vela: Contributors. (line 11757)
-* mathematical functions: Intrinsic mathematical methods.
- (line 8693)
-* Matlab: Philosophy. (line 916)
-* 'max': Operation Types. (line 5303)
-* max(): Methods and functions.
- (line 7044)
-* maximum: Operation Types. (line 5303)
-* MD5 digest: MD5 digests. (line 4978)
-* mean: Operation Types. (line 5303)
-* 'mebs': Operation Types. (line 5303)
-* mebs(): Methods and functions.
- (line 7050)
-* memory available: Memory Requirements.
- (line 1354)
-* memory available <1>: RAM disks. (line 5079)
-* memory leaks: Memory for ncap2. (line 1443)
-* memory requirements: Memory Requirements.
- (line 1354)
-* memory requirements <1>: Subsetting Files. (line 2549)
-* memory requirements <2>: RAM disks. (line 5079)
-* merging files: Appending Variables.
- (line 1032)
-* merging files <1>: ncks netCDF Kitchen Sink.
- (line 10020)
-* metadata: ncks netCDF Kitchen Sink.
- (line 10280)
-* metadata optimization: Metadata Optimization.
- (line 1527)
-* metadata, global: ncecat netCDF Ensemble Concatenator.
- (line 9743)
-* metadata, global <1>: ncks netCDF Kitchen Sink.
- (line 10237)
-* 'mibs': Operation Types. (line 5303)
-* mibs(): Methods and functions.
- (line 7052)
-* Michael Decker: Checking CF-compliance.
- (line 2976)
-* Michael Prather: Promoting Single-precision to Double.
- (line 5939)
-* Michael Schulz: Contributors. (line 11755)
-* Microsoft: Compatability. (line 389)
-* Microsoft <1>: Windows Operating System.
- (line 489)
-* Microsoft Visual Studio: Windows Operating System.
- (line 489)
-* Mike Folk: netCDF2/3/4 and HDF4/5 Support.
- (line 603)
-* Mike Page: Contributors. (line 11755)
-* 'min': Operation Types. (line 5303)
-* min(): Methods and functions.
- (line 7046)
-* minimum: Operation Types. (line 5303)
-* missing values: Missing Values. (line 4022)
-* missing values <1>: ncatted netCDF Attribute Editor.
- (line 8958)
-* missing values <2>: ncflint netCDF File Interpolator.
- (line 9891)
-* missing values <3>: ncks netCDF Kitchen Sink.
- (line 10293)
-* missing values ncap2: Missing values ncap2.
- (line 6937)
-* 'missing_value': Missing Values. (line 4022)
-* 'missing_value' <1>: Packed data. (line 5166)
-* 'missing_value' <2>: ncrename netCDF Renamer.
- (line 11386)
-* MKS units: UDUnits Support. (line 3791)
-* MKS units <1>: UDUnits Support. (line 3921)
-* MODIS: Regrid MODIS Data. (line 12753)
-* MODIS <1>: Add Coordinates to MODIS Data.
- (line 12891)
-* modulus: Intrinsic mathematical methods.
- (line 8690)
-* monotonic coordinates: Performance. (line 1485)
-* monthly average: Daily data in one file.
- (line 11832)
-* monthly average <1>: Monthly Cycle. (line 12589)
-* monthly data: Monthly data in one file.
- (line 11863)
-* monthly data <1>: One time point one file.
- (line 11895)
-* monthly data <2>: Multiple files with multiple time points.
- (line 11913)
-* move groups: Moving Groups. (line 2826)
-* MRO: Subcycle. (line 3397)
-* MSA: Multislabs. (line 3473)
-* 'msk_*': CF Conventions. (line 6033)
-* 'msrcp': Remote storage. (line 1867)
-* msrcp: Retaining Retrieved Files.
- (line 2098)
-* 'msread': Remote storage. (line 1867)
-* MSS: Remote storage. (line 1827)
-* multi-file operators: Single and Multi-file Operators.
- (line 1372)
-* multi-file operators <1>: Specifying Input Files.
- (line 1724)
-* multi-file operators <2>: Specifying Output Files.
- (line 1807)
-* multi-file operators <3>: nces netCDF Ensemble Statistics.
- (line 9572)
-* multi-file operators <4>: ncecat netCDF Ensemble Concatenator.
- (line 9738)
-* multi-file operators <5>: ncra netCDF Record Averager.
- (line 11075)
-* multi-file operators <6>: ncrcat netCDF Record Concatenator.
- (line 11145)
-* multi-hyperslab: Multislabs. (line 3473)
-* Multi-Record Operator: Subcycle. (line 3397)
-* multiplication: Intrinsic mathematical methods.
- (line 8690)
-* multiplication <1>: ncbo netCDF Binary Operator.
- (line 9235)
-* multiplication <2>: ncflint netCDF File Interpolator.
- (line 9945)
-* 'multiply': ncbo netCDF Binary Operator.
- (line 9253)
-* multiplying data: ncbo netCDF Binary Operator.
- (line 9235)
-* multiplying data <1>: ncflint netCDF File Interpolator.
- (line 9818)
-* multislab: Multislabs. (line 3473)
-* 'mv': Subsetting Files. (line 2467)
-* 'MVS': Compatability. (line 408)
-* MVS: Windows Operating System.
- (line 489)
-* naked characters: ncbo netCDF Binary Operator.
- (line 9282)
-* NaN: ncatted netCDF Attribute Editor.
- (line 9151)
-* NARR (North American Regional Reanalysis)a: Where statement.
- (line 7269)
-* NASA: Proposals for Institutional Funding.
- (line 11809)
-* NASA EOSDIS: Large Numbers of Files.
- (line 1210)
-* National Virtual Ocean Data System: OPeNDAP. (line 2043)
-* 'nc3tonc4': netCDF2/3/4 and HDF4/5 Support.
- (line 726)
-* 'nc4': Chunking. (line 4258)
-* ncadd: ncbo netCDF Binary Operator.
- (line 9235)
-* ncap: ncap2 netCDF Arithmetic Processor.
- (line 6228)
-* ncap2: Compatability. (line 452)
-* ncap2 <1>: ncap2 netCDF Arithmetic Processor.
- (line 6228)
-* 'ncap2': Memory for ncap2. (line 1443)
-* 'ncap2' <1>: OpenMP Threading. (line 1576)
-* 'ncap2' <2>: Manual type conversion.
- (line 5944)
-* 'ncap2' <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10709)
-* NCAR: Climate Model Paradigm.
- (line 933)
-* NCAR <1>: Compression. (line 4899)
-* NCAR MSS: Remote storage. (line 1827)
-* ncatted: Missing Values. (line 4049)
-* ncatted <1>: ncatted netCDF Attribute Editor.
- (line 8926)
-* 'ncatted': Subsetting Files. (line 2568)
-* 'ncatted' <1>: Missing Values. (line 4074)
-* 'ncatted' <2>: History Attribute. (line 5992)
-* 'ncattget': ncatted netCDF Attribute Editor.
- (line 8933)
-* 'ncattget' <1>: Filters for 'ncks'.
- (line 10448)
-* 'ncavg': Filters for 'ncks'.
- (line 10448)
-* ncbo: ncbo netCDF Binary Operator.
- (line 9235)
-* 'ncbo': Missing Values. (line 4097)
-* ncdiff: ncbo netCDF Binary Operator.
- (line 9235)
-* ncdismember: Dismembering Files.
- (line 2869)
-* ncdismember <1>: Checking CF-compliance.
- (line 2976)
-* ncdivide: ncbo netCDF Binary Operator.
- (line 9235)
-* 'ncdmnsz': Filters for 'ncks'.
- (line 10448)
-* 'ncdump': Determining File Format.
- (line 2238)
-* 'ncdump' <1>: ncks netCDF Kitchen Sink.
- (line 10144)
-* 'ncdump' <2>: ncks netCDF Kitchen Sink.
- (line 10280)
-* 'ncdump' <3>: ncks netCDF Kitchen Sink.
- (line 10364)
-* ncecat: ncecat netCDF Ensemble Concatenator.
- (line 9658)
-* 'ncecat': Concatenation. (line 1119)
-* nces: nces netCDF Ensemble Statistics.
- (line 9503)
-* 'nces': Averaging. (line 1177)
-* 'nces' <1>: Missing Values. (line 4097)
-* 'ncextr': ncks netCDF Kitchen Sink.
- (line 9984)
-* ncflint: ncflint netCDF File Interpolator.
- (line 9818)
-* 'ncflint': Interpolating. (line 1199)
-* 'ncflint' <1>: Missing Values. (line 4097)
-* 'ncgen': ncks netCDF Kitchen Sink.
- (line 10144)
-* 'ncgen-hdf': ncks netCDF Kitchen Sink.
- (line 10144)
-* ncks: Deflation. (line 4972)
-* ncks <1>: Examples ncap2. (line 8668)
-* ncks <2>: ncks netCDF Kitchen Sink.
- (line 9971)
-* 'ncks': Determining File Format.
- (line 2207)
-* NCL: Philosophy. (line 916)
-* NCL <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10905)
-* 'nclist': Filters for 'ncks'.
- (line 10448)
-* 'ncl_convert2nc': netCDF2/3/4 and HDF4/5 Support.
- (line 726)
-* 'ncl_convert2nc' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10905)
-* 'ncmax': Filters for 'ncks'.
- (line 10448)
-* 'ncmdn': Filters for 'ncks'.
- (line 10448)
-* 'ncmin': Filters for 'ncks'.
- (line 10448)
-* NcML: ncks netCDF Kitchen Sink.
- (line 10364)
-* ncmult: ncbo netCDF Binary Operator.
- (line 9235)
-* ncmultiply: ncbo netCDF Binary Operator.
- (line 9235)
-* NCO availability: Availability. (line 308)
-* NCO homepage: Availability. (line 332)
-* nco script file: Annual Average over Regions.
- (line 12298)
-* 'NCO User Guide': Availability. (line 316)
-* 'nco.config.log.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 888)
-* 'nco.configure.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 888)
-* 'nco.make.${GNU_TRP}.foo': Help Requests and Bug Reports.
- (line 888)
-* 'nco_input_file_list': Large Numbers of Files.
- (line 1237)
-* 'nco_input_file_list' <1>: File List Attributes.
- (line 6002)
-* 'nco_input_file_number': Large Numbers of Files.
- (line 1237)
-* 'nco_input_file_number' <1>: File List Attributes.
- (line 6002)
-* 'nco_openmp_thread_number': OpenMP Threading. (line 1550)
-* ncpack: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* ncpdq: Chunking. (line 4174)
-* ncpdq <1>: ncecat netCDF Ensemble Concatenator.
- (line 9765)
-* ncpdq <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* ncpdq <3>: ncrcat netCDF Record Concatenator.
- (line 11157)
-* 'ncpdq': Concatenation. (line 1152)
-* 'ncpdq' <1>: OpenMP Threading. (line 1576)
-* ncra: Examples ncap2. (line 8668)
-* ncra <1>: ncra netCDF Record Averager.
- (line 11058)
-* 'ncra': Averaging. (line 1177)
-* 'ncra' <1>: Missing Values. (line 4097)
-* ncrcat: ncrcat netCDF Record Concatenator.
- (line 11129)
-* 'ncrcat': Concatenation. (line 1119)
-* 'ncrcat' <1>: OpenMP Threading. (line 1576)
-* 'ncrecsz': Filters for 'ncks'.
- (line 10448)
-* ncrename: Missing Values. (line 4049)
-* ncrename <1>: ncrename netCDF Renamer.
- (line 11211)
-* 'ncrng': Filters for 'ncks'.
- (line 10448)
-* NCSA: netCDF2/3/4 and HDF4/5 Support.
- (line 617)
-* ncsub: ncbo netCDF Binary Operator.
- (line 9235)
-* ncsubtract: ncbo netCDF Binary Operator.
- (line 9235)
-* 'ncunits': Filters for 'ncks'.
- (line 10448)
-* ncunpack: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* ncwa: Examples ncap2. (line 8668)
-* ncwa <1>: ncwa netCDF Weighted Averager.
- (line 11425)
-* 'ncwa': Averaging. (line 1177)
-* 'ncwa' <1>: OpenMP Threading. (line 1576)
-* 'ncwa' <2>: Missing Values. (line 4097)
-* 'NC_BYTE': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_CHAR': Hyperslabs. (line 3252)
-* 'NC_CHAR' <1>: ncbo netCDF Binary Operator.
- (line 9357)
-* 'NC_CHAR' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_DISKLESS': RAM disks. (line 5079)
-* 'NC_DOUBLE': Intrinsic mathematical methods.
- (line 8796)
-* 'NC_DOUBLE' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_FLOAT': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_FORMAT_DAP2': Determining File Format.
- (line 2216)
-* 'NC_FORMAT_DAP4': Determining File Format.
- (line 2216)
-* 'NC_FORMAT_NC3': Determining File Format.
- (line 2216)
-* 'NC_FORMAT_NC_HDF4': Determining File Format.
- (line 2216)
-* 'NC_FORMAT_NC_HDF5': Determining File Format.
- (line 2216)
-* 'NC_FORMAT_PNETCDF': Determining File Format.
- (line 2216)
-* 'NC_INT': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_INT64': netCDF2/3/4 and HDF4/5 Support.
- (line 642)
-* 'NC_INT64' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_SHORT': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_UBYTE': netCDF2/3/4 and HDF4/5 Support.
- (line 642)
-* 'NC_UBYTE' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_UINT': netCDF2/3/4 and HDF4/5 Support.
- (line 642)
-* 'NC_UINT' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_UINT64': netCDF2/3/4 and HDF4/5 Support.
- (line 642)
-* 'NC_UINT64' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'NC_USHORT': netCDF2/3/4 and HDF4/5 Support.
- (line 642)
-* 'NC_USHORT' <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* 'nc__enddef()': Metadata Optimization.
- (line 1527)
-* ndims(): Methods and functions.
- (line 7086)
-* NEARBYINT: Intrinsic mathematical methods.
- (line 8693)
-* nearest integer function (exact): Intrinsic mathematical methods.
- (line 8693)
-* nearest integer function (inexact): Intrinsic mathematical methods.
- (line 8693)
-* NEC: Compatability. (line 389)
-* Neil Davis: Automatic type conversion.
- (line 5553)
-* nesting: Syntax of ncap2 statements.
- (line 6308)
-* netCDF: Availability. (line 336)
-* netCDF2: netCDF2/3/4 and HDF4/5 Support.
- (line 591)
-* netCDF2 <1>: File Formats and Conversion.
- (line 2121)
-* 'NETCDF2_ONLY': netCDF2/3/4 and HDF4/5 Support.
- (line 612)
-* netCDF3: netCDF2/3/4 and HDF4/5 Support.
- (line 591)
-* netCDF3 <1>: File Formats and Conversion.
- (line 2121)
-* netCDF3 classic file format: Determining File Format.
- (line 2207)
-* netCDF4: netCDF2/3/4 and HDF4/5 Support.
- (line 617)
-* netCDF4 <1>: File Formats and Conversion.
- (line 2121)
-* netCDF4 <2>: Multiple Record Dimensions.
- (line 3984)
-* netCDF4 classic file format: Determining File Format.
- (line 2207)
-* netCDF4 file format: Determining File Format.
- (line 2207)
-* 'NETCDF4' files: File Formats and Conversion.
- (line 2121)
-* 'NETCDF4_CLASSIC' files: File Formats and Conversion.
- (line 2121)
-* 'NETCDF4_ROOT': netCDF2/3/4 and HDF4/5 Support.
- (line 765)
-* Nick Bower: Contributors. (line 11757)
-* 'NINTAP': Specifying Input Files.
- (line 1687)
-* 'NINTAP' <1>: ncra netCDF Record Averager.
- (line 11098)
-* 'NINTAP' <2>: ncrcat netCDF Record Concatenator.
- (line 11176)
-* non-coordinate grid properties: CF Conventions. (line 6064)
-* non-rectangular grids: Irregular grids. (line 7608)
-* non-standard grids: Irregular grids. (line 7608)
-* normalization: Normalization and Integration.
- (line 11548)
-* North American Regional Reanalysis (NARR): Where statement.
- (line 7269)
-* Not-a-Number: ncatted netCDF Attribute Editor.
- (line 9151)
-* 'NO_NETCDF_2': netCDF2/3/4 and HDF4/5 Support.
- (line 601)
-* NRA: Proposals for Institutional Funding.
- (line 11809)
-* 'nrnet': Remote storage. (line 1867)
-* NSD: Compression. (line 4485)
-* NSF: Proposals for Institutional Funding.
- (line 11802)
-* NSF <1>: Proposals for Institutional Funding.
- (line 11802)
-* NT (Microsoft operating system): Windows Operating System.
- (line 489)
-* NUL: ncatted netCDF Attribute Editor.
- (line 9129)
-* 'NUL': ncpdq netCDF Permute Dimensions Quickly.
- (line 10827)
-* NUL-termination: ncatted netCDF Attribute Editor.
- (line 9129)
-* null operation: ncflint netCDF File Interpolator.
- (line 9942)
-* number literals 'ncap2': Number literals. (line 6791)
-* Number of Significant Digits: Compression. (line 4485)
-* 'number_miss()': Missing values ncap2.
- (line 6987)
-* 'number_of_significant_digits': Compression. (line 4652)
-* 'numerator': Normalization and Integration.
- (line 11548)
-* NVODS: OPeNDAP. (line 2043)
-* 'nxt_lsr': ncpdq netCDF Permute Dimensions Quickly.
- (line 10789)
-* oceanography: OPeNDAP. (line 1941)
-* octal dump: Determining File Format.
- (line 2250)
-* 'od': Determining File Format.
- (line 2250)
-* 'OMP_NUM_THREADS': OpenMP Threading. (line 1576)
-* on-line documentation: Availability. (line 316)
-* open source: Foreword. (line 228)
-* open source <1>: OPeNDAP. (line 2043)
-* Open-source Project for a Network Data Access Protocol: OPeNDAP.
- (line 1941)
-* OPeNDAP.: OPeNDAP. (line 1941)
-* OpenMP: Memory Requirements.
- (line 1361)
-* OpenMP <1>: Single and Multi-file Operators.
- (line 1436)
-* OpenMP <2>: OpenMP Threading. (line 1550)
-* operation types: Operation Types. (line 5303)
-* operation types <1>: ncra netCDF Record Averager.
- (line 11091)
-* operation types <2>: ncwa netCDF Weighted Averager.
- (line 11501)
-* operator speed: Libraries. (line 567)
-* operator speed <1>: Temporary Output Files.
- (line 959)
-* operator speed <2>: Performance. (line 1482)
-* operator speed <3>: Metadata Optimization.
- (line 1527)
-* operator speed <4>: Missing Values. (line 4081)
-* operator speed <5>: ncatted netCDF Attribute Editor.
- (line 8949)
-* operator speed <6>: ncrename netCDF Renamer.
- (line 11270)
-* operators: Summary. (line 291)
-* OptIPuter: Proposals for Institutional Funding.
- (line 11802)
-* Orion Powlawski: Contributors. (line 11759)
-* 'ORO': CF Conventions. (line 6033)
-* 'ORO' <1>: Normalization and Integration.
- (line 11622)
-* orphan dimensions: ncks netCDF Kitchen Sink.
- (line 10327)
-* OS: Compatability. (line 389)
-* output file: Large Numbers of Files.
- (line 1263)
-* output file <1>: Specifying Output Files.
- (line 1795)
-* OUTPUT-PATH: Remote storage. (line 1890)
-* overview: Performance. (line 1467)
-* overwriting files: Temporary Output Files.
- (line 1007)
-* overwriting files <1>: Batch Mode. (line 5954)
-* pack(): Methods and functions.
- (line 7068)
-* 'pack(x)': Packed data. (line 5166)
-* packing: OPeNDAP. (line 2005)
-* packing <1>: Chunking. (line 4174)
-* packing <2>: Packed data. (line 5166)
-* packing <3>: ncecat netCDF Ensemble Concatenator.
- (line 9765)
-* packing <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* packing <5>: ncrcat netCDF Record Concatenator.
- (line 11157)
-* packing map: ncpdq netCDF Permute Dimensions Quickly.
- (line 10783)
-* packing policy: ncpdq netCDF Permute Dimensions Quickly.
- (line 10708)
-* pack_byte(): Methods and functions.
- (line 7071)
-* pack_int(): Methods and functions.
- (line 7075)
-* pack_short(): Methods and functions.
- (line 7073)
-* papers: Performance. (line 1467)
-* 'parallel': Parallel. (line 12985)
-* parallelism: OpenMP Threading. (line 1550)
-* parallelism <1>: Proposals for Institutional Funding.
- (line 11804)
-* parser: ncap2 netCDF Arithmetic Processor.
- (line 6228)
-* pasting variables: Appending Variables.
- (line 1032)
-* 'pathcc': Compatability. (line 408)
-* 'pathCC': Compatability. (line 408)
-* PathScale: Compatability. (line 389)
-* Patrice Dumas: Contributors. (line 11759)
-* Patrick Kursawe: Contributors. (line 11761)
-* pattern matching: Large Numbers of Files.
- (line 1245)
-* pattern matching <1>: Subsetting Files. (line 2568)
-* pattern matching <2>: ncatted netCDF Attribute Editor.
- (line 8980)
-* pattern matching <3>: ncatted netCDF Attribute Editor.
- (line 9188)
-* PayPal: Contributing. (line 11684)
-* PCK_MAP: ncpdq netCDF Permute Dimensions Quickly.
- (line 10783)
-* PCK_PLC: ncpdq netCDF Permute Dimensions Quickly.
- (line 10716)
-* peak memory usage: Memory Requirements.
- (line 1354)
-* peak memory usage <1>: RAM disks. (line 5079)
-* Pedro Vicente: Contributors. (line 11733)
-* performance: Libraries. (line 567)
-* performance <1>: Temporary Output Files.
- (line 959)
-* performance <2>: Performance. (line 1473)
-* performance <3>: Performance. (line 1482)
-* performance <4>: Metadata Optimization.
- (line 1527)
-* performance <5>: Missing Values. (line 4081)
-* performance <6>: ncatted netCDF Attribute Editor.
- (line 8949)
-* performance <7>: ncrename netCDF Renamer.
- (line 11270)
-* Perl: Philosophy. (line 916)
-* Perl <1>: Large Numbers of Files.
- (line 1276)
-* Perl <2>: ncatted netCDF Attribute Editor.
- (line 9103)
-* permute dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* permute(): Arrays and hyperslabs.
- (line 6714)
-* Peter Campbell: Contributors. (line 11755)
-* 'pgcc': Compatability. (line 408)
-* 'pgCC': Compatability. (line 408)
-* PGI: Compatability. (line 389)
-* philosophy: Philosophy. (line 907)
-* pipes: Large Numbers of Files.
- (line 1258)
-* 'plc_all': Chunking. (line 4189)
-* 'plc_g2d': Chunking. (line 4189)
-* 'plc_g3d': Chunking. (line 4189)
-* 'plc_r1d': Chunking. (line 4189)
-* 'plc_xpl': Chunking. (line 4189)
-* 'plc_xst': Chunking. (line 4189)
-* portability: Compatability. (line 389)
-* positional arguments: Specifying Output Files.
- (line 1795)
-* POSIX: Command Line Options.
- (line 1615)
-* POSIX <1>: Subsetting Files. (line 2586)
-* POW: Intrinsic mathematical methods.
- (line 8693)
-* power: Intrinsic mathematical methods.
- (line 8690)
-* power function: Intrinsic mathematical methods.
- (line 8693)
-* PPC: Compression. (line 4469)
-* 'prd': Chunking. (line 4258)
-* precision: Intrinsic mathematical methods.
- (line 8796)
-* preprocessor tokens: Windows Operating System.
- (line 504)
-* presentations: Availability. (line 326)
-* print() 'ncap2': print statement. (line 6908)
-* 'printf': Compatability. (line 421)
-* 'printf()': ncatted netCDF Attribute Editor.
- (line 9105)
-* 'printf()' <1>: ncks netCDF Kitchen Sink.
- (line 10338)
-* 'printf()' <2>: Filters for 'ncks'.
- (line 10576)
-* printing files contents: ncks netCDF Kitchen Sink.
- (line 9971)
-* printing variables: ncks netCDF Kitchen Sink.
- (line 9971)
-* Processor: ncra netCDF Record Averager.
- (line 11098)
-* Processor <1>: ncrcat netCDF Record Concatenator.
- (line 11176)
-* Processor, CCM: Specifying Input Files.
- (line 1687)
-* promotion: Type Conversion. (line 5461)
-* promotion <1>: Promoting Single-precision to Double.
- (line 5597)
-* promotion <2>: Intrinsic mathematical methods.
- (line 8763)
-* proposals: Proposals for Institutional Funding.
- (line 11802)
-* pseudonym: Symbolic Links. (line 540)
-* publications: Availability. (line 326)
-* QLogic: Compatability. (line 389)
-* Qt: Windows Operating System.
- (line 496)
-* quadruple-precision: Intrinsic mathematical methods.
- (line 8796)
-* quantization: Compression. (line 4427)
-* quantization <1>: Compression. (line 4469)
-* quench: ncks netCDF Kitchen Sink.
- (line 10319)
-* Quick Start: Quick Start. (line 11822)
-* quotes: Subsetting Files. (line 2643)
-* quotes <1>: Examples ncap2. (line 8645)
-* quotes <2>: ncbo netCDF Binary Operator.
- (line 9283)
-* quotes <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10951)
-* 'r1d': Chunking. (line 4189)
-* RAG: ncecat netCDF Ensemble Concatenator.
- (line 9682)
-* RAM: Memory Requirements.
- (line 1354)
-* RAM <1>: RAM disks. (line 5079)
-* RAM disks: Temporary Output Files.
- (line 965)
-* RAM disks <1>: RAM disks. (line 5079)
-* RAM files: Temporary Output Files.
- (line 965)
-* RAM files <1>: RAM disks. (line 5079)
-* RAM variables: RAM disks. (line 5119)
-* RAM variables <1>: Methods and functions.
- (line 7174)
-* ram_delete(): RAM variables. (line 7186)
-* ram_write(): RAM variables. (line 7186)
-* random walk: Promoting Single-precision to Double.
- (line 5814)
-* rank: Expressions. (line 6349)
-* rank <1>: ncbo netCDF Binary Operator.
- (line 9324)
-* rank <2>: ncbo netCDF Binary Operator.
- (line 9337)
-* rank <3>: ncbo netCDF Binary Operator.
- (line 9388)
-* rank <4>: ncwa netCDF Weighted Averager.
- (line 11466)
-* 'rcp': Windows Operating System.
- (line 510)
-* 'rcp' <1>: Remote storage. (line 1827)
-* RCS: Operator Version. (line 6196)
-* 'rd1': Chunking. (line 4258)
-* re-dimension: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* re-order dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* record aggregation: ncecat netCDF Ensemble Concatenator.
- (line 9682)
-* record append: Record Appending. (line 3346)
-* record average: ncra netCDF Record Averager.
- (line 11058)
-* record concatenation: ncrcat netCDF Record Concatenator.
- (line 11129)
-* record dimension: Appending Variables.
- (line 1035)
-* record dimension <1>: C and Fortran Index Conventions.
- (line 3147)
-* record dimension <2>: Chunking. (line 4404)
-* record dimension <3>: nces netCDF Ensemble Statistics.
- (line 9537)
-* record dimension <4>: ncecat netCDF Ensemble Concatenator.
- (line 9692)
-* record dimension <5>: ncecat netCDF Ensemble Concatenator.
- (line 9696)
-* record dimension <6>: ncecat netCDF Ensemble Concatenator.
- (line 9802)
-* record dimension <7>: ncks netCDF Kitchen Sink.
- (line 10105)
-* record dimension <8>: ncks netCDF Kitchen Sink.
- (line 10184)
-* record dimension <9>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10855)
-* record dimension <10>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10857)
-* record dimension <11>: ncpdq netCDF Permute Dimensions Quickly.
- (line 11006)
-* record dimension <12>: ncra netCDF Record Averager.
- (line 11058)
-* record dimension <13>: ncra netCDF Record Averager.
- (line 11071)
-* record dimension <14>: ncrcat netCDF Record Concatenator.
- (line 11142)
-* record variable: C and Fortran Index Conventions.
- (line 3142)
-* record variable <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10859)
-* rectangular grids: Irregular grids. (line 7608)
-* recursion: Subsetting Files. (line 2467)
-* recursive: Subsetting Files. (line 2467)
-* 'regex': Subsetting Files. (line 2586)
-* regression: Annual Average over Regions.
- (line 12298)
-* regressions archive: Help Requests and Bug Reports.
- (line 895)
-* regrid: Regrid MODIS Data. (line 12753)
-* regular expressions: Large Numbers of Files.
- (line 1245)
-* regular expressions <1>: Specifying Input Files.
- (line 1687)
-* regular expressions <2>: Subsetting Files. (line 2568)
-* regular expressions <3>: Examples ncap2. (line 8645)
-* regular expressions <4>: ncatted netCDF Attribute Editor.
- (line 8980)
-* regular expressions <5>: ncatted netCDF Attribute Editor.
- (line 9188)
-* 'remap': Sort methods. (line 7363)
-* Remik Ziemlinski: Contributors. (line 11755)
-* remote files: Windows Operating System.
- (line 510)
-* remote files <1>: Remote storage. (line 1827)
-* rename groups: Moving Groups. (line 2826)
-* renaming attributes: ncrename netCDF Renamer.
- (line 11211)
-* renaming attributes <1>: Regrid MODIS Data. (line 12753)
-* renaming dimensions: ncrename netCDF Renamer.
- (line 11211)
-* renaming dimensions <1>: Regrid MODIS Data. (line 12753)
-* renaming groups: ncrename netCDF Renamer.
- (line 11211)
-* renaming variables: ncrename netCDF Renamer.
- (line 11211)
-* renaming variables <1>: Annual Average over Regions.
- (line 12298)
-* renaming variables <2>: Regrid MODIS Data. (line 12753)
-* reporting bugs: Help Requests and Bug Reports.
- (line 825)
-* reshape variables: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* 'restrict': Compatability. (line 445)
-* reverse data: ncpdq netCDF Permute Dimensions Quickly.
- (line 10981)
-* reverse dimensions: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* reverse dimensions <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10938)
-* reverse dimensions <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10960)
-* reverse(): Arrays and hyperslabs.
- (line 6707)
-* 'rew': Chunking. (line 4258)
-* Rich Signell: Contributors. (line 11755)
-* RINT: Intrinsic mathematical methods.
- (line 8693)
-* 'rint()': Compression. (line 4554)
-* 'rms': Operation Types. (line 5303)
-* 'rmssdn': Operation Types. (line 5303)
-* rmssdn(): Methods and functions.
- (line 7056)
-* root-mean-square: Operation Types. (line 5303)
-* Rorik Peterson: Contributors. (line 11724)
-* ROUND: Intrinsic mathematical methods.
- (line 8693)
-* rounding: Compression. (line 4427)
-* rounding <1>: Promoting Single-precision to Double.
- (line 5814)
-* rounding functions: Intrinsic mathematical methods.
- (line 8693)
-* RPM: netCDF2/3/4 and HDF4/5 Support.
- (line 760)
-* running average: ncra netCDF Record Averager.
- (line 11058)
-* Russ Rew: Contributors. (line 11703)
-* Russ Rew <1>: Contributors. (line 11735)
-* safeguards: Temporary Output Files.
- (line 944)
-* safeguards <1>: ncrename netCDF Renamer.
- (line 11255)
-* 'scale_factor': Packed data. (line 5166)
-* 'scale_factor' <1>: ncecat netCDF Ensemble Concatenator.
- (line 9765)
-* 'scale_factor' <2>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10709)
-* 'scale_factor' <3>: ncrcat netCDF Record Concatenator.
- (line 11157)
-* SCALE_FORMAT: Performance. (line 1490)
-* scaling: Performance. (line 1473)
-* scaling <1>: ncflint netCDF File Interpolator.
- (line 9945)
-* Scientific Data Operators: Proposals for Institutional Funding.
- (line 11802)
-* 'scl': Chunking. (line 4258)
-* Scott Capps: Contributors. (line 11753)
-* 'scp': Windows Operating System.
- (line 510)
-* 'scp' <1>: Remote storage. (line 1827)
-* script file: ncap2 netCDF Arithmetic Processor.
- (line 6246)
-* SDO: Proposals for Institutional Funding.
- (line 11802)
-* seasonal average: Monthly data in one file.
- (line 11866)
-* security: MD5 digests. (line 4978)
-* SEIII: Proposals for Institutional Funding.
- (line 11802)
-* semi-colon: Syntax of ncap2 statements.
- (line 6303)
-* separator: ncks netCDF Kitchen Sink.
- (line 10394)
-* server: Large Datasets. (line 1324)
-* server <1>: OPeNDAP. (line 1941)
-* server <2>: Retaining Retrieved Files.
- (line 2101)
-* server <3>: Retaining Retrieved Files.
- (line 2109)
-* Server-Side Distributed Data Reduction & Analysis: Proposals for Institutional Funding.
- (line 11802)
-* server-side processing: OPeNDAP. (line 2067)
-* server-side processing <1>: Proposals for Institutional Funding.
- (line 11802)
-* 'set_miss()': Missing values ncap2.
- (line 6965)
-* 'sftp': Windows Operating System.
- (line 510)
-* 'sftp' <1>: Remote storage. (line 1827)
-* SGI: Compatability. (line 389)
-* Sh shell: Filters for 'ncks'.
- (line 10448)
-* shared memory machines: Memory Requirements.
- (line 1361)
-* shared memory parallelism: OpenMP Threading. (line 1550)
-* shell: Large Numbers of Files.
- (line 1245)
-* shell <1>: Subsetting Files. (line 2643)
-* shell <2>: UDUnits Support. (line 3848)
-* shell <3>: Examples ncap2. (line 8645)
-* shell <4>: ncbo netCDF Binary Operator.
- (line 9283)
-* shell <5>: Filters for 'ncks'.
- (line 10448)
-* SIGNEDNESS: Performance. (line 1490)
-* significand: Compression. (line 4538)
-* significand <1>: Compression. (line 4554)
-* SIN: Intrinsic mathematical methods.
- (line 8693)
-* sine function: Intrinsic mathematical methods.
- (line 8693)
-* single-precision: Intrinsic mathematical methods.
- (line 8796)
-* SINH: Intrinsic mathematical methods.
- (line 8693)
-* size(): Methods and functions.
- (line 7084)
-* SLD (Swath-like Data): Where statement. (line 7252)
-* SMP: OpenMP Threading. (line 1550)
-* 'sort': Sort methods. (line 7363)
-* sort alphabetically: ncks netCDF Kitchen Sink.
- (line 10079)
-* sort alphabetically <1>: Filters for 'ncks'.
- (line 10543)
-* source code: Availability. (line 308)
-* spatial distribution: Global Distribution of Long-term Average.
- (line 12195)
-* special attributes: ncks netCDF Kitchen Sink.
- (line 10130)
-* special characters: ncatted netCDF Attribute Editor.
- (line 9120)
-* speed: Libraries. (line 567)
-* speed <1>: Temporary Output Files.
- (line 959)
-* speed <2>: Large Datasets. (line 1337)
-* speed <3>: Performance. (line 1482)
-* speed <4>: Metadata Optimization.
- (line 1527)
-* speed <5>: Missing Values. (line 4081)
-* speed <6>: ncatted netCDF Attribute Editor.
- (line 8949)
-* speed <7>: ncrename netCDF Renamer.
- (line 11270)
-* 'sqravg': Operation Types. (line 5303)
-* sqravg(): Methods and functions.
- (line 7040)
-* 'sqrt': Operation Types. (line 5303)
-* SQRT: Intrinsic mathematical methods.
- (line 8693)
-* square root function: Intrinsic mathematical methods.
- (line 8693)
-* SSDDRA: Proposals for Institutional Funding.
- (line 11802)
-* SSH: Windows Operating System.
- (line 510)
-* SSH <1>: Retaining Retrieved Files.
- (line 2098)
-* sshort(): Methods and functions.
- (line 7140)
-* standard deviation: Operation Types. (line 5303)
-* standard deviation <1>: Operation Types. (line 5388)
-* standard deviation <2>: Annual Average over Regions.
- (line 12298)
-* standard input: Large Numbers of Files.
- (line 1228)
-* standard input <1>: nces netCDF Ensemble Statistics.
- (line 9572)
-* standard input <2>: ncecat netCDF Ensemble Concatenator.
- (line 9738)
-* standard input <3>: ncra netCDF Record Averager.
- (line 11075)
-* standard input <4>: ncrcat netCDF Record Concatenator.
- (line 11145)
-* 'standard_name': Auxiliary Coordinates.
- (line 3667)
-* 'stat() system call': Buffer sizes. (line 5048)
-* statement: Syntax of ncap2 statements.
- (line 6289)
-* static linking: Libraries. (line 566)
-* 'stdin': Large Numbers of Files.
- (line 1228)
-* 'stdin' <1>: File List Attributes.
- (line 6002)
-* 'stdin' <2>: nces netCDF Ensemble Statistics.
- (line 9572)
-* 'stdin' <3>: ncecat netCDF Ensemble Concatenator.
- (line 9738)
-* 'stdin' <4>: ncra netCDF Record Averager.
- (line 11075)
-* 'stdin' <5>: ncrcat netCDF Record Concatenator.
- (line 11145)
-* Steve Emmerson: Contributors. (line 11703)
-* stride: Hyperslabs. (line 3222)
-* stride <1>: Stride. (line 3285)
-* stride <2>: Multislabs. (line 3512)
-* stride <3>: UDUnits Support. (line 3839)
-* stride <4>: ncra netCDF Record Averager.
- (line 11083)
-* stride <5>: ncra netCDF Record Averager.
- (line 11114)
-* stride <6>: ncrcat netCDF Record Concatenator.
- (line 11153)
-* stride <7>: ncrcat netCDF Record Concatenator.
- (line 11194)
-* strings: ncatted netCDF Attribute Editor.
- (line 9129)
-* Stu Muller: Contributors. (line 11755)
-* stub: Remote storage. (line 1899)
-* sub-cycle: Subcycle. (line 3397)
-* subcycle: Subcycle. (line 3397)
-* subsetting: Subsetting Files. (line 2410)
-* subsetting <1>: Subsetting Coordinate Variables.
- (line 2668)
-* subsetting <2>: CF Conventions. (line 6111)
-* subsetting <3>: Filters for 'ncks'.
- (line 10549)
-* subsetting <4>: Filters for 'ncks'.
- (line 10640)
-* 'subtract': ncbo netCDF Binary Operator.
- (line 9253)
-* subtracting data: ncbo netCDF Binary Operator.
- (line 9235)
-* subtraction: Intrinsic mathematical methods.
- (line 8690)
-* subtraction <1>: ncbo netCDF Binary Operator.
- (line 9235)
-* summary: Summary. (line 291)
-* Sun: Compatability. (line 389)
-* swap space: Large Datasets. (line 1311)
-* swap space <1>: Memory Requirements.
- (line 1354)
-* swap space <2>: RAM disks. (line 5079)
-* Swath-like Data (SLD): Where statement. (line 7252)
-* switches: Command Line Options.
- (line 1615)
-* symbolic links: Symbolic Links. (line 530)
-* symbolic links <1>: Statistics vs. Concatenation.
- (line 1088)
-* symbolic links <2>: Large Numbers of Files.
- (line 1270)
-* symbolic links <3>: ncbo netCDF Binary Operator.
- (line 9297)
-* symbolic links <4>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10777)
-* synchronous file access: Remote storage. (line 1827)
-* synonym: Symbolic Links. (line 540)
-* syntax: Syntax of ncap2 statements.
- (line 6289)
-* System calls: Buffer sizes. (line 5048)
-* Takeshi Enomoto: Contributors. (line 11765)
-* TAN: Intrinsic mathematical methods.
- (line 8693)
-* TANH: Intrinsic mathematical methods.
- (line 8693)
-* temporary files: Temporary Output Files.
- (line 944)
-* temporary files <1>: RAM disks. (line 5159)
-* temporary output files: Temporary Output Files.
- (line 944)
-* temporary output files <1>: RAM disks. (line 5159)
-* temporary output files <2>: ncrename netCDF Renamer.
- (line 11255)
-* TeXinfo: Availability. (line 316)
-* threads: Memory Requirements.
- (line 1361)
-* threads <1>: Single and Multi-file Operators.
- (line 1436)
-* threads <2>: OpenMP Threading. (line 1550)
-* THR_NBR: OpenMP Threading. (line 1576)
-* 'time': UDUnits Support. (line 3830)
-* 'time' <1>: ARM Conventions. (line 6165)
-* time-averaging: Examples ncap2. (line 8668)
-* time-averaging <1>: Daily data in one file.
- (line 11832)
-* time-averaging <2>: Daily data in one file.
- (line 11846)
-* time-averaging <3>: Monthly data in one file.
- (line 11866)
-* time-averaging <4>: Monthly data in one file.
- (line 11869)
-* time-averaging <5>: One time point one file.
- (line 11895)
-* time-averaging <6>: Global Distribution of Long-term Average.
- (line 12195)
-* time-averaging <7>: Annual Average over Regions.
- (line 12298)
-* time-averaging <8>: Monthly Cycle. (line 12589)
-* timestamp: History Attribute. (line 5974)
-* 'time_offset': ARM Conventions. (line 6165)
-* total: Operation Types. (line 5303)
-* transpose: C and Fortran Index Conventions.
- (line 3140)
-* transpose <1>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10869)
-* TREFHT: Promoting Single-precision to Double.
- (line 5748)
-* TRUNC: Intrinsic mathematical methods.
- (line 8693)
-* 'trunc()': Automatic type conversion.
- (line 5540)
-* truncate (groups): Flattening Groups. (line 2736)
-* truncation function: Intrinsic mathematical methods.
- (line 8693)
-* truth condition: Mask condition. (line 11519)
-* truth condition <1>: Normalization and Integration.
- (line 11650)
-* 'ttl': Operation Types. (line 5303)
-* ttl(): Methods and functions.
- (line 7058)
-* type conversion: Type Conversion. (line 5455)
-* type(): Methods and functions.
- (line 7088)
-* ubyte(): Methods and functions.
- (line 7151)
-* UDUnits: Compatability. (line 399)
-* UDUnits <1>: UDUnits Support. (line 3777)
-* UDUnits <2>: CF Conventions. (line 6033)
-* uint(): Methods and functions.
- (line 7155)
-* 'ulimit': Large Datasets. (line 1324)
-* unary operations: Memory for ncap2. (line 1443)
-* underlying file format: Determining File Format.
- (line 2216)
-* UNICOS: Large Datasets. (line 1324)
-* Unidata: Compatability. (line 399)
-* Unidata <1>: netCDF2/3/4 and HDF4/5 Support.
- (line 617)
-* Unidata <2>: UDUnits Support. (line 3777)
-* union: Subsetting Files. (line 2410)
-* union <1>: Subsetting Files. (line 2516)
-* union of files: Appending Variables.
- (line 1054)
-* unit64(): Methods and functions.
- (line 7159)
-* 'units': UDUnits Support. (line 3777)
-* 'units' <1>: UDUnits Support. (line 3798)
-* 'units' <2>: UDUnits Support. (line 3830)
-* 'units' <3>: ncatted netCDF Attribute Editor.
- (line 9177)
-* 'units' <4>: ncatted netCDF Attribute Editor.
- (line 9180)
-* 'units' <5>: ncflint netCDF File Interpolator.
- (line 9963)
-* UNIX: Compatability. (line 399)
-* UNIX <1>: Windows Operating System.
- (line 508)
-* UNIX <2>: Large Numbers of Files.
- (line 1245)
-* UNIX <3>: Command Line Options.
- (line 1615)
-* UNIX <4>: Specifying Input Files.
- (line 1693)
-* UNIX <5>: Filters for 'ncks'.
- (line 10448)
-* unlimited dimension: ncecat netCDF Ensemble Concatenator.
- (line 9692)
-* 'unmap': Sort methods. (line 7363)
-* unpack(): Methods and functions.
- (line 7077)
-* 'unpack(x)': Packed data. (line 5166)
-* unpacking: OPeNDAP. (line 2005)
-* unpacking <1>: Packed data. (line 5166)
-* unpacking <2>: ncecat netCDF Ensemble Concatenator.
- (line 9765)
-* unpacking <3>: ncpdq netCDF Permute Dimensions Quickly.
- (line 10691)
-* unpacking <4>: ncrcat netCDF Record Concatenator.
- (line 11157)
-* URL: Remote storage. (line 1827)
-* 'User Guide': Availability. (line 316)
-* ushort(): Methods and functions.
- (line 7153)
-* value list: Attributes. (line 6749)
-* variable names: ncrename netCDF Renamer.
- (line 11211)
-* variables, appending: Annual Average over Regions.
- (line 12298)
-* variance: Operation Types. (line 5303)
-* version: Operator Version. (line 6196)
-* Vista (Microsoft operating system): Windows Operating System.
- (line 489)
-* Weather and Research Forecast (WRF) Model: Where statement.
- (line 7252)
-* weighted average: ncwa netCDF Weighted Averager.
- (line 11425)
-* weighted average <1>: Monthly Cycle. (line 12589)
-* Wenshan Wang: Contributors. (line 11775)
-* 'wget': Remote storage. (line 1827)
-* where(): Where statement. (line 7201)
-* while(): Loops. (line 7308)
-* whitespace: UDUnits Support. (line 3839)
-* wildcards: Specifying Input Files.
- (line 1687)
-* wildcards <1>: Subsetting Files. (line 2568)
-* wildcards <2>: ncatted netCDF Attribute Editor.
- (line 8980)
-* wildcards <3>: ncatted netCDF Attribute Editor.
- (line 9188)
-* 'WIN32': Windows Operating System.
- (line 504)
-* Windows: Compatability. (line 389)
-* Windows <1>: Windows Operating System.
- (line 489)
-* wrapped coordinates: Hyperslabs. (line 3257)
-* wrapped coordinates <1>: Wrapped Coordinates.
- (line 3617)
-* wrapped coordinates <2>: Irregular grids. (line 7637)
-* wrapped coordinates <3>: Filters for 'ncks'.
- (line 10680)
-* wrapped filenames: Specifying Input Files.
- (line 1753)
-* WRF: Irregular grids. (line 7695)
-* WRF (Weather and Research Forecast Model): Where statement.
- (line 7252)
-* WWW documentation: Availability. (line 316)
-* 'xargs': Large Numbers of Files.
- (line 1245)
-* 'xargs' <1>: Specifying Output Files.
- (line 1812)
-* 'xlC': Compatability. (line 408)
-* 'xlc': Compatability. (line 408)
-* XML: ncks netCDF Kitchen Sink.
- (line 10364)
-* XP (Microsoft operating system): Windows Operating System.
- (line 489)
-* 'xpl': Chunking. (line 4189)
-* 'xst': Chunking. (line 4189)
-* 'xst' <1>: Chunking. (line 4258)
-* Yorick: Philosophy. (line 916)
-* Yorick <1>: Performance. (line 1493)
-* 'zlib': Compression. (line 4427)
-
diff --git a/doc/nco.xml b/doc/nco.xml
deleted file mode 100644
index 362bda7..0000000
--- a/doc/nco.xml
+++ /dev/null
@@ -1,19335 +0,0 @@
-<?xml version="1.0"?>
-<!DOCTYPE texinfo PUBLIC "-//GNU//DTD TexinfoML V5.0//EN" "http://www.gnu.org/software/texinfo/dtd/5.0/texinfo.dtd">
-<texinfo xml:lang="en">
-<filename file="nco.xml"></filename>
-<preamble>\input texinfo @c -*-texinfo-*-
-</preamble><!-- c \input /home/zender/texinfo_fedora.tex -->
-<!-- c \input /home/zender/texinfo_ubuntu.tex -->
-
-<!-- c 19980817: TeX-based systems (texi2dvi, texi2dvi -pdf) require texinfo.tex -->
-<!-- c Hyper-text systems (texi2html, makeinfo) do not require texinfo.tex -->
-
-<ignore>
-
-$Header$
-
-Purpose: TeXInfo documentation for netCDF Operators (NCO)
-
-URL: http://nco.sf.net/nco.texi
-
-Copyright (C) 1995--2015 Charlie Zender
-Permission is granted to copy, distribute and/or modify this document
-under the terms of the GNU Free Documentation License, Version 1.3
-or any later version published by the Free Software Foundation;
-with no Invariant Sections, no Front-Cover Texts, and no Back-Cover
-Texts. The license is available online at
-http://www.gnu.org/copyleft/fdl.html
-
-The original author of this software, Charlie Zender, seeks to improve
-it with your suggestions, contributions, bug-reports, and patches.
-Charlie Zender <surname at uci dot edu> (yes, my surname is zender)
-Department of Earth System Science
-3200 Croul Hall
-University of California, Irvine
-Irvine, CA 92697-3100
-
-After editing any hyperlink locations, Emacs users update indices with
-C-c C-u C-a texinfo-all-menus-update
-C-c C-u C-e texinfo-every-node-update
-
-Multiple files:
-M-x texinfo-multiple-files-update
-
-Usage:
-export TEX='tex --src-specials'
-cd ~/nco/doc;texi2dvi nco.texi; makeinfo --html --ifinfo --no-split --output=nco.html nco.texi; makeinfo nco.texi; dvips -o nco.ps nco.dvi;texi2dvi --pdf nco.texi;makeinfo --xml --ifinfo --no-split --output=nco.xml nco.texi;makeinfo --no-headers --output=nco.txt nco.texi
-dvips -o nco.ps nco.dvi
-dvips -Ppdf -G0 -o nco.ps nco.dvi
-makeinfo --html --ifinfo --no-split --output=nco.html nco.texi
-makeinfo --no-split --output=nco.info nco.texi
-makeinfo --no-headers --no-split --output=nco.txt nco.texi
-makeinfo --xml --no-split --output=nco.xml nco.texi
-makeinfo --docbook --no-split --output=nco.xml nco.texi
-pdftotext nco.pdf nco.txt
-ps2pdf -dMaxSubsetPct=100 -dCompatibilityLevel=1.2 -dSubsetFonts=true -dEmbedAllFonts=true nco.ps nco.pdf
-texi2dvi --output=nco.dvi nco.texi
-texi2dvi --pdf --output=nco.pdf nco.texi
-texi2html -monolithic -verbose nco.texi
-texi2html -l2h -l2h_tmp=./l2h_tmp -monolithic -verbose nco.texi # Invoke latex2html
-cd ~/nco/doc;/usr/bin/scp index.shtml nco_news.shtml ChangeLog TODO README VERSION nco.dvi nco.html nco.info* nco.pdf nco.ps nco.texi nco.txt nco.xml ../data/ncap.in ../data/ncap2.in zender,nco at web.sf.net:/home/project-web/nco/htdocs;cd -
-cd ~/nco/doc; scp -p index.shtml nco_news.shtml ChangeLog TODO README VERSION nco.dvi nco.html nco.info* nco.pdf nco.ps nco.texi nco.txt nco.xml ../data/ncap.in ../data/ncap2.in dust.ess.uci.edu:/var/www/html/nco;cd -
-# 20130806 Copy CMIP5 images (takes additional time)
-cd ~/nco/doc/xmp;/usr/bin/scp fgr*.png fgr*.eps zender,nco at web.sf.net:/home/project-web/nco/htdocs/xmp;cd -
-cd ~/nco/doc/xmp;/usr/bin/scp fgr*.png fgr*.eps dust.ess.uci.edu:/var/www/html/nco/xmp;cd -
-# 20120203 Copy all nco.html PNG images (takes additional time)
-cd ~/nco/doc;/usr/bin/scp nco_*.png zender,nco at web.sf.net:/home/project-web/nco/htdocs;cd -
-cd ~/nco/doc;scp -p nco_*.png dust.ess.uci.edu:/var/www/html/nco;cd -
-# 20130801 Copy nco.texi to Ubuntu machine for quick build-tests
-scp ~/nco/doc/nco.texi givre.ess.uci.edu:nco/doc
-
-NB: @cindex references in footnotes propagate to PDF file, not to
- HTML files, bug-report sent to makeinfo people 20040229
-
-Producing HTML, makeinfo vs. texi2html:
-makeinfo: Better format overall
- Uses node names for cross references and index
- Acronyms look better
- Excludes @ifinfo sections by default (override with --ifinfo)
-texi2html: Index sub-divided by first character
- More fancy options (e.g., latex2html), though none very useful
- Misprints title
- Includes @ifinfo sections by default
-
-Legend (defined in "highlighting" section of TeXInfo manual):
- at code{}: Program text, e.g., @code{if(foo) x=y;}
- at command{}: Commands, e.g., @command{ncra}
- at dfn{}: Define use of term, e.g., @dfn{supercalifragilisticexpialidocious}
- at email{}: E-mail address, e.g., @email{surname at uci dot edu}
- at emph{}: Emphasize text, e.g., @emph{important}
- at env{}: Environment variable, e.g., @env{HOME}
- at file{}: Filename, e.g., @file{in.nc}
- at html: Text until @end html passed without translation
- at ifhtml: Text until @end ifhtml passed with translation
- at kbd{}: Keyboard input, e.g., @kbd{ncra in.nc out.nc}
- at key{}: Key name, e.g., @key{ESC} (rarely needed)
- at option{}: Command-line option, e.g., @option{--dbg}
- at samp{}: Extended commands, character sequences, e.g., @samp{ncra in.nc out.nc}
- at uref{}: URL with optional alternate text, e.g., @uref{http://nco.sf.net,NCO homepage}
- at url{}: URL, synonym for @uref
- at var{}: Metasyntactic variable, e.g., @var{input}
- at verbatim: Anything goes inside environment (no @'s needed to protect special characters like braces)
- at verbatiminclude: Insert contents of file here, e.g., @verbatiminclude{nco.sh}
- at example: Quoted environment (@'s needed to protect special characters like braces)
- at w{}: Unbreakable text, e.g., @w{of 1}
-
-Use '@*' to force hard carriage return
-Use '@:', after periods, questions marks, exclamation marks, or colons
-that do not end sentences, e.g., 'vs.@:'
-Use '@.', '@!', and `@?' to end sentences that end with single capital letters (e.g., initials)
-
-Resources:
-Octave TeXInfo manual shows clean TeXInfo structure
-/usr/share/doc/octave-2.1.34/interpreter/octave.texi
-</ignore>
-
-<!-- c Start of header -->
-
-<!-- c No variables may be defined before TeXInfo @setfilename header -->
-<setfilename file="nco.info" spaces=" ">nco.info</setfilename>
-
-<!-- c Define edition, date, ... -->
-<set name="nco-edition" line=" nco-edition 4.4.8">4.4.8</set>
-<set name="doc-edition" line=" doc-edition 4.4.8">4.4.8</set>
-<set name="copyright-years" line=" copyright-years 1995--2015">1995--2015</set>
-<set name="update-year" line=" update-year 2015">2015</set>
-<set name="update-date" line=" update-date 17 February 2015">17 February 2015</set>
-<set name="update-month" line=" update-month February 2015">February 2015</set>
-
-<settitle spaces=" "><acronym><acronymword>NCO</acronymword></acronym> 4.4.8 User Guide</settitle>
-
-<!-- c Uncomment following line to produce guide in smallbook format -->
-<!-- c @smallbook -->
-<!-- c Merge function index into concept index -->
-<syncodeindex from="fn" to="cp" line=" fn cp"></syncodeindex>
-
-<!-- c 20090226 Add bibliography capabilities as per -->
-<!-- c http://lists.gnu.org/archive/html//help-texinfo/2004-12/txtPW9h_VG8ez.txt -->
-<!-- c % csz 20100313 remove next line to prevent "\input texinfo" from -->
-<!-- c % appearing in printed output -->
-<!-- c %% \input texinfo @c -*-texinfo-*- -->
-
-<!-- c %% my-bib-macros.texi - Texinfo macros providing a crude -->
-<!-- c %% bibliography and citation capability. -->
-
-<!-- c % Copyright (C) 2004 Aaron S. Hawley -->
-
-<!-- c % Author: Aaron S. Hawley <ashawley at gnu.uvm.edu> -->
-<!-- c % Keywords: docs, texinfo, extensions, bib -->
-
-<!-- c % This file is free software; you can redistribute it and/or modify -->
-<!-- c % it under the terms of the GNU General Public License as published by -->
-<!-- c % the Free Software Foundation; either version 2, or (at your option) -->
-<!-- c % any later version. -->
-
-<!-- c % This file is distributed in the hope that it will be useful, -->
-<!-- c % but WITHOUT ANY WARRANTY; without even the implied warranty of -->
-<!-- c % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -->
-<!-- c % GNU General Public License for more details. -->
-
-<!-- c % You should have received a copy of the GNU General Public License -->
-<!-- c % along with GNU Emacs; see the file COPYING. If not, write to -->
-<!-- c % the Free Software Foundation, Inc., 59 Temple Place - Suite 330, -->
-<!-- c % Boston, MA 02111-1307, USA. -->
-
-<!-- c %% Commentary: -->
-
-<!-- c %%% Introduction -->
-
-<!-- c %% Creates references to a ``Bibliography'' or ``References'' -->
-<!-- c %% section of a Texinfo document, using Texinfo's -->
-<!-- c %% macro system. Although not as terse a way to cite systems as is -->
-<!-- c %% found in document systems like TeX, the format is simpler and -->
-<!-- c %% the rendering is easier for non-academic readers. -->
-
-<!-- c % -->
-
-<!-- c %%% Usage -->
-
-<!-- c %% References to cited works can be put in any section of a document. -->
-<!-- c %% The cited works must be put in either a Texinfo table (for -->
-<!-- c %% instance with ``@table @asis ... @end table'') or within a -->
-<!-- c %% Texinfo list (something like ``@enumerate ... @end enumerate'' -->
-<!-- c %% or ``@itemize @bullet ... @end itemize''). They are created -->
-<!-- c %% with the command ``@mybibitem{REF-NAME}''. To cite a reference -->
-<!-- c %% with a @mybibitem use ``@mybibcite{REF-NAME}''. -->
-
-<!-- c %% The beginning of a document must include (using the @include -->
-<!-- c %% command) the file my-bib-macros.texi, which should be made -->
-<!-- c %% available in the current directory of the parent file. A single -->
-<!-- c %% call should be made to choose to use a list or a table. The -->
-<!-- c %% command to chose is called @mybibuselist{NODE}, where NODE is -->
-<!-- c %% the node containing the location where the references are listed. -->
-
-<!-- c % -->
-
-<!-- c %%% Example -->
-
-<!-- c %% \input texinfo @c -*-texinfo-*- -->
-<!-- c %% @comment %**start of header -->
-<!-- c %% @setfilename my-file-with-bib.info -->
-<!-- c %% @settitle Texinfo with a Bibliography and References -->
-<!-- c %% -->
-<!-- c %% @include my-bib-macros.texi -->
-<!-- c %% @mybibuselist{References} -->
-<!-- c %% -->
-<!-- c %% @comment %**end of header -->
-<!-- c %% -->
-<!-- c %% @node Top -->
-<!-- c %% @top Top -->
-<!-- c %% -->
-<!-- c %% @menu -->
-<!-- c %% * Introduction:: -->
-<!-- c %% * @mybibnode{}:: -->
-<!-- c %% -->
-<!-- c %% @end menu -->
-<!-- c %% -->
-<!-- c %% @node Introduction -->
-<!-- c %% @chapter Introduction -->
-<!-- c %% -->
-<!-- c %% The ability of a documentation format to make cross references to a -->
-<!-- c %% bibliography, a feature of LaTeX @mybibcite{LaTeX2e}, isn't -->
-<!-- c %% currently supported in Texinfo. -->
-<!-- c %% -->
-<!-- c %% @node @mybibnode{} -->
-<!-- c %% @chapter References -->
-<!-- c %% -->
-<!-- c %% @itemize @asis -->
-<!-- c %% -->
-<!-- c %% @mybibitem{LaTeX2e} Leslie Lamport, LaTeX User's Guide and -->
-<!-- c %% Reference Manual, 2nd edition, Addison-Wesley, Reading, -->
-<!-- c %% Massachusetts, 1994. -->
-<!-- c %% -->
-<!-- c %% @end itemize -->
-<!-- c %% -->
-<!-- c %% @bye -->
-
-<!-- c %% -->
-
-<!-- c %% This example produces (in Info): -->
-
-<!-- c %% 1 Introduction -->
-<!-- c %% ************** -->
-<!-- c %% -->
-<!-- c %% The ability of a documentation format to make cross -->
-<!-- c %% references to a bibliography, a feature of LaTeX (See item -->
-<!-- c %% [LaTeX2e] in *Note LaTeX2e: References.), is not currently -->
-<!-- c %% supported in Texinfo. -->
-<!-- c %% -->
-<!-- c %% -->
-<!-- c %% 2 References -->
-<!-- c %% ************ -->
-<!-- c %% -->
-<!-- c %% [LaTeX2e] Leslie Lamport, LaTeX User's Guide and Reference -->
-<!-- c %% Manual, 2nd edition, Addison-Wesley, Reading, -->
-<!-- c %% Massachusetts, 1994. -->
-
-<!-- c %% and (in printed output): -->
-
-<!-- c %% 1 Introduction -->
-<!-- c %% ************** -->
-<!-- c %% -->
-<!-- c %% The ability of a documentation format to make cross -->
-<!-- c %% references to a bibliography, a feature of LaTeX (See item -->
-<!-- c %% [LaTeX2e] in Chapter 2 [References], page 3.), is not -->
-<!-- c %% currently supported in Texinfo. -->
-<!-- c %% -->
-<!-- c %% -->
-<!-- c %% 2 References -->
-<!-- c %% ************ -->
-<!-- c %% -->
-<!-- c %% [LaTeX2e] Leslie Lamport, LaTeX User's Guide and Reference -->
-<!-- c %% Manual, 2nd edition, Addison-Wesley, Reading, -->
-<!-- c %% Massachusetts, 1994. -->
-
-<!-- c % -->
-
-<!-- c %%% Notes -->
-
-<!-- c %% The pointers to references will be functional in hypertext -->
-<!-- c %% documentation (info, HTML, XML and others) and properly rendered -->
-<!-- c %% in print documents, because they are implemented with Texinfo's -->
-<!-- c %% cross referencing capabilities (using @anchor and @ref). Failures -->
-<!-- c %% by an author to make proper references with ``my-bib-macros'' in -->
-<!-- c %% their document will give cross referencing errors by Texinfo -->
-<!-- c %% conversion tools. -->
-
-<!-- c %% Only one ``Reference'' section is allowed per document. -->
-
-<!-- c %% An improvement of this system would create cross references -->
-<!-- c %% (with @xref) at each cited work to all the originating cross -->
-<!-- c %% refererences. -->
-
-<!-- c % -->
-
-<!-- c %% Code: -->
-
-<!-- c % Configuration Options -->
-
-<!-- c %% @mybibsetrefnode : Defines the name of the node to contain -->
-<!-- c %% references. -->
-
-<macro name="mybibsetrefnode" line=" mybibsetrefnode{node}"><formalarg>node</formalarg>@set mybibrefnode \node\
-</macro>
-
-<!-- c %% @mybibnode{} : Macro to be placed at node containing references -->
-<!-- c %% and calls to @mybibcite{} -->
-
-<macro name="mybibnode" line=" mybibnode{}">@value{mybibrefnode}
-</macro>
-
-<!-- c %% @mybibusetable : Whether each @mybibitem will be put in a -->
-<!-- c %% table. -->
-
-<macro name="mybibusetable" line=" mybibusetable{node}"><formalarg>node</formalarg>@set mybibtable true
- at ifset mybiblist
- at clear mybiblist
- at end ifset
- at mybibsetrefnode{\node\}
-</macro>
-
-<!-- c %% @mybibuselist : Whether each @mybibitem will be put in a -->
-<!-- c %% list. -->
-
-<macro name="mybibuselist" line=" mybibuselist{node}"><formalarg>node</formalarg>@set mybiblist true
- at ifset mybibtable
- at clear mybibtable
- at end ifset
- at mybibsetrefnode{\node\}
-</macro>
-
-
-<!-- c %% @mybibcite{REF} : Cites the cross reference REF. -->
-
-<macro name="mybibcite" line=" mybibcite{ref}"><formalarg>ref</formalarg>@ifclear mybibrefnode
- at mybibmakeref{mybibsetrefnode was not used, \ref\}
- at end ifclear
- at c %**else if
- at ifset mybibrefnode
- at mybibmakeref{@mybibnode{}, \ref\}
- at end ifset
-
-</macro>
-
-<macro name="mybibmakeref" line=" mybibmakeref{node, ref}"><formalarg>node</formalarg><formalarg>ref</formalarg>(See item [\ref\] in @ref{\node\, \ref\}.)
-</macro>
-
-<!-- c %% @mybibcite{REF} : Creates a cross referenced citation REF. -->
-
-<macro name="mybibitem" line=" mybibitem{ref}"><formalarg>ref</formalarg>@ifclear mybiblist
- at ifclear mybibtable
- at set mybiblist true
- at end ifclear
- at end ifclear
- at ifset mybiblist
- at item
- at anchor{\ref\}[\ref\]
- at end ifset
- at c %**else if
- at ifset mybibtable
- at item @anchor{\ref\}[\ref\]
- at end ifset
-
-</macro>
-
-<!-- c %% my-bib-macros.texi ends here -->
-<set name="mybiblist" line=" mybiblist true">true</set>
-<set name="mybibrefnode" line=" mybibrefnode References">References</set>
-
-<!-- c end of header -->
-
-<!-- c TeXInfo macros may not appear before TeXInfo @setfilename header -->
-<!-- c [idx] Index -->
-<macro name="idx" line=" idx {}">i
-</macro>
-<!-- c [m s-1] Meridional wind speed -->
-<macro name="wndmrd" line=" wndmrd {}">v
-</macro>
-<!-- c [m s-1] Zonal wind speed -->
-<macro name="wndznl" line=" wndznl {}">u
-</macro>
-<macro name="xxx" line=" xxx {}">x
-</macro>
-<!-- c TeX macros may appear anywhere after line 1 -->
-<tex endspaces=" ">
-% Define TeX macros to roughly correspond to LaTeX style files
-% Use \gdef instead of \def to make definition persistent across TeX blocks
-% These should be consistent with any TeXInfo macros
-% 1. Primary commands
-\gdef\dmn{D} % [dmn] Variable dimension
-\gdef\rdr{R} % [dmn] Re-order dimension
-\gdef\shr{S} % [dmn] Share dimension
-\gdef\dmnidx{n} % [idx] Dimension index
-\gdef\dmnnbr{N} % [nbr] Dimension number
-\gdef\rdridx{r} % [idx] Re-order index
-\gdef\rdrnbr{R} % [nbr] Re-order number
-\gdef\shridx{s} % [idx] Share index
-\gdef\shrnbr{S} % [nbr] Share number
-\gdef\dfr{{\rm d}} % [frc] Math differential fxm: upright
-\gdef\idx{i} % [idx] Index
-\gdef\psl{\epsilon} % [frc] epsilon
-\gdef\iii{i} % [idx] i
-\gdef\jjj{j} % [idx] j
-\gdef\kkk{k} % [idx] k
-\gdef\lmnidx{i} % [idx] Element index
-\gdef\outnbr{J} % [nbr] Number of elements in output hyperslab
-\gdef\lmnnbr{N} % [nbr] Number of elements in input hyperslab
-\gdef\tllnbr{M} % [nbr] Tally (number of valid elements in input hyperslab)
-\gdef\me{{\rm e}} % [frc] Math e fxm: upright
-\gdef\mi{{\rm i}} % [frc] Math i fxm: upright
-\gdef\mpi{\pi} % [frc] Math pi
-\gdef\mpp{\cal{M}} % [map] Map
-\gdef\mskflg{m} % [flg] Mask flag
-\gdef\mssflg{\mu} % [flg] Missing value flag
-\gdef\qqq{q} % [ltr] q
-\gdef\tm{t} % [s] Time
-\gdef\prmsbs{\prime} % [sbs] Prime subscript
-\gdef\wgt{w} % [frc] Weight
-\gdef\wndmrd{v} % [m s-1] Meridional wind speed
-\gdef\wndznl{u} % [m s-1] Zonal wind speed
-\gdef\vvv{v} % [ltr] v
-\gdef\xxx{x} % [ltr] x
-\gdef\yyy{y} % [ltr] y
-
-% 2. Derived commands
-\gdef\pslavg{\bar{\epsilon}} % [frc] Mean error
-\gdef\pslmax{\epsilon_{\rm max}} % [frc] Maximum error
-\gdef\pslmin{\epsilon_{\rm min}} % [frc] Minimum error
-\gdef\pslmabs{\epsilon_{\rm mabs}^{+}} % [frc] Maximum absolute error
-\gdef\pslmibs{\epsilon_{\rm mibs}^{+}} % [frc] Minimum absolute error
-\gdef\pslmebs{\bar{\epsilon}^{+}} % [frc] Mean absolute error
-\gdef\dmnvct{{\bf \dmn}} % [vct] Dimension vector
-\gdef\dmnprm{\dmn^{\prmsbs}} % [vct] Dimension prime
-\gdef\dmnsubnnn{\dmn_{\dmnidx}} % [dmn] Dimension sub nnn
-\gdef\shrsubnnn{\shr_{\dmnidx}} % [dmn] Share dimension sub nnn
-\gdef\shrsubsss{\shr_{\shridx}} % [dmn] Share dimension sub sss
-\gdef\dmnsubnnnprm{\dmn_{\dmnidx}^{\prmsbs}} % [vct] Dimension prime sub nnn
-\gdef\dmnvctprm{{\bf \dmn}^{\prmsbs}} % [vct] Dimension vector prime
-\gdef\rdrvct{{\bf \rdr}} % [vct] Re-order vector
-\gdef\shrvct{{\bf \shr}} % [vct] Share vector
-\gdef\xxxprm{\xxx^{\prmsbs}} % [ltr] x prime
-
-% 3. Doubly derived commands
-
-</tex>
-
-<!-- c install-info installs NCO info into this category -->
-<dircategory spaces=" ">netCDF</dircategory>
-<direntry endspaces=" ">
-<menuentry leadingtext="* "><menunode separator=":: ">NCO</menunode><menudescription><pre xml:space="preserve">User Guide for the netCDF Operator suite
-</pre></menudescription></menuentry></direntry>
-
-<!-- c Set smallbook if printing in smallbook format -->
-<!-- c Example of smallbook font is actually written using smallbook -->
-<!-- c In bigbook, a kludge is used for TeX output -->
-<!-- c set smallbook -->
-<clear name="smallbook" line=" smallbook"></clear>
-
-<tex endspaces=" ">
-% fxm: Try to get thumbnails working with texinfo &textndash;pdf -generated PDF files
-% \input thumbpdf.sty
-% Experiment with smaller amounts of whitespace between chapters and sections
-\global\chapheadingskip = 15pt plus 4pt minus 2pt
-\global\secheadingskip = 12pt plus 3pt minus 2pt
-\global\subsecheadingskip = 9pt plus 2pt minus 2pt
-</tex>
-
-<!-- c Experiment with smaller amounts of whitespace between paragraphs in the 8.5 by 11 inch format -->
-<tex endspaces=" ">
-\global\parskip 6pt plus 1pt
-</tex>
-
-<!-- c Uncomment next line to remove ugly TeX warning blocks from overfull hboxes -->
-<finalout></finalout>
-
-<para>This file documents <acronym><acronymword>NCO</acronymword></acronym>, a collection of utilities to
-manipulate and analyze netCDF files.
-</para>
-<para>Copyright ©right; 1995&textndash;2015 Charlie Zender
-</para>
-<para>This is the first edition of the <cite>NCO User Guide</cite>,&linebreak;
-and is consistent with <w>version 2</w> of <file>texinfo.tex</file>.
-</para>
-<para>Permission is granted to copy, distribute and/or modify this document
-under the terms of the <acronym><acronymword>GNU</acronymword></acronym> Free Documentation License, <w>Version 1.3</w>
-or any later version published by the Free Software Foundation;
-with no Invariant Sections, no Front-Cover Texts, and no Back-Cover
-Texts. The license is available online at
-<uref><urefurl>http://www.gnu.org/copyleft/fdl.html</urefurl></uref>
-</para>
-<para>The original author of this software, Charlie Zender, wants to improve it
-with the help of your suggestions, improvements, bug-reports, and patches.&linebreak;
-Charlie Zender <surname at uci dot edu> (yes, my surname is zender)&linebreak;
-3200 Croul Hall&linebreak;
-Department of Earth System Science&linebreak;
-University of California, Irvine&linebreak;
-Irvine, CA 92697-3100&linebreak;
-</para>
-<ignore>
-Permission is granted to process this file through TeX and print the
-results, provided the printed document carries copying permission
-notice identical to this one except for the removal of this paragraph
-(this paragraph not being relevant to the printed manual).
-</ignore>
-
-<setchapternewpage line=" odd"></setchapternewpage>
-
-<titlepage endspaces=" ">
-<html endspaces=" ">
-<meta name="Author" content="Charlie Zender">
-<meta name="Keywords" content="NCO documentation, NCO User Guide,
-netCDF, operator, GCM, CCM, scientific data, ncbo, ncfe, ncecat,
-ncflint, ncks, ncra, ncrcat, ncrename, ncwa">
-</html>
-<html endspaces=" ">
-<body text="#000000" link="#0000EF" vlink="#008080" alink="#FF0000">
-<font face="Arial">
-</html>
-<title spaces=" ">NCO User Guide</title>
-<subtitle spaces=" ">A suite of netCDF operators</subtitle>
-<subtitle spaces=" ">Edition 4.4.8, for <acronym><acronymword>NCO</acronymword></acronym> Version 4.4.8</subtitle>
-<subtitle spaces=" ">February 2015</subtitle>
-
-<author spaces=" ">by Charlie Zender</author>
-<author spaces=" ">Department of Earth System Science</author>
-<author spaces=" ">University of California, Irvine</author>
-<html endspaces=" ">
-<p>WWW readers: Having trouble finding the section you want?</p>
-<p>Search for keywords in the <a href="#index">(hyper) index</a> at the end</p>
-</html>
-
-<!-- c Include Distribution inside titlepage so that headings are turned off -->
-<page></page>
-<vskip> 0pt plus 1filll</vskip>
-<para>Copyright ©right; 1995&textndash;2015 Charlie Zender.
-</para>
-<sp value="2" line=" 2"></sp>
-<para>This is the first edition of the <cite>NCO User Guide</cite>,&linebreak;
-and is consistent with <w>version 2</w> of <file>texinfo.tex</file>.
-</para><sp value="2" line=" 2"></sp>
-
-<para>Published by Charlie Zender&linebreak;
-Department of Earth System Science&linebreak;
-3200 Croul Hall&linebreak;
-University of California, Irvine&linebreak;
-Irvine, CA 92697-3100 USA&linebreak;
-</para>
-<para>Permission is granted to copy, distribute and/or modify this document
-under the terms of the <acronym><acronymword>GNU</acronymword></acronym> Free Documentation License, <w>Version 1.3</w>
-or any later version published by the Free Software Foundation;
-with no Invariant Sections, no Front-Cover Texts, and no Back-Cover
-Texts. The license is available online at
-<uref><urefurl>http://www.gnu.org/copyleft/fdl.html</urefurl></uref>
-</para><sp value="2" line=" 2"></sp>
-<para>The original author of this software, Charlie Zender, wants to improve it
-with the help of your suggestions, improvements, bug-reports, and patches.&linebreak;
-Charlie Zender <surname at uci dot edu> (yes, my surname is zender)&linebreak;
-Department of Earth System Science&linebreak;
-3200 Croul Hall&linebreak;
-University of California, Irvine&linebreak;
-Irvine, CA 92697-3100&linebreak;
-</para><sp value="2" line=" 2"></sp>
-<!-- c Cover art by Robynn Rudel -->
-</titlepage>
-
-<!-- c Print table of contents -->
-<contents></contents>
-
-<node name="Top" spaces=" "><nodename>Top</nodename><nodenext spaces=" ">Foreword</nodenext><nodeprev spaces=" ">(dir)</nodeprev><nodeup spaces=" ">(dir)</nodeup></node>
-<top spaces=" "><sectiontitle>NCO User Guide</sectiontitle>
-<!-- c node format: node-name, next, previous, up -->
-
-<para><emph>Note to readers of the NCO User Guide in Info format</emph>:
-<emph>The <uref><urefurl>./nco.pdf</urefurl><urefdesc>NCO User Guide in PDF format</urefdesc></uref>
-(also on <uref><urefurl>http://nco.sf.net/nco.pdf</urefurl><urefdesc>SourceForge</urefdesc></uref>)
-contains the complete <acronym><acronymword>NCO</acronymword></acronym> documentation.</emph>
-This Info documentation is equivalent except it refers you to the
-printed (i.e., DVI, PostScript, and PDF) documentation for description
-of complex mathematical expressions. Also, images appear only in the
-PDF document due to SourceForge limitations.
-</para>
-<para>The netCDF Operators, or <acronym><acronymword>NCO</acronymword></acronym>, are a suite of programs known as
-operators.
-The operators facilitate manipulation and analysis of data stored in the
-self-describing netCDF format, available from
-(<uref><urefurl>http://www.unidata.ucar.edu/packages/netcdf</urefurl></uref>).
-Each <acronym><acronymword>NCO</acronymword></acronym> operator (e.g., ncks) takes netCDF input
-file(s), performs an operation (e.g., averaging, hyperslabbing, or
-renaming), and outputs a processed netCDF file.
-Although most users of netCDF data are involved in scientific research,
-these data formats, and thus <acronym><acronymword>NCO</acronymword></acronym>, are generic and are equally
-useful in fields from agriculture to zoology.
-The <acronym><acronymword>NCO</acronymword></acronym> User Guide illustrates <acronym><acronymword>NCO</acronymword></acronym> use with
-examples from the field of climate modeling and analysis.
-The <acronym><acronymword>NCO</acronymword></acronym> homepage is <uref><urefurl>http://nco.sf.net</urefurl></uref>, and
-there is a mirror at <uref><urefurl>http://dust.ess.uci.edu/nco</urefurl></uref>.
-</para>
-<para>This documentation is for <acronym><acronymword>NCO</acronymword></acronym> version 4.4.8.
-It was last updated 17 February 2015.
-Corrections, additions, and rewrites of this documentation are very
-welcome.
-</para>
-<para>Enjoy,&linebreak;
-Charlie Zender
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Foreword</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Summary</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Introduction</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Strategies</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Shared features</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Reference Manual</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Contributing</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Quick Start</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">CMIP5 Example</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Parallel</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">CCSM Example</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">mybibnode</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">General Index</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="fwd"></a> <!&textndash; http://nco.sf.net/nco.html#fwd &textndash;>
-</html>
-</top>
-<node name="Foreword" spaces=" "><nodename>Foreword</nodename><nodenext spaces=" ">Summary</nodenext><nodeprev spaces=" ">Top</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<unnumbered spaces=" "><sectiontitle>Foreword</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1">foreword</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="2">Charlie Zender</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> is the result of software needs that arose while I worked
-on projects funded by <acronym><acronymword>NCAR</acronymword></acronym>, <acronym><acronymword>NASA</acronymword></acronym>, and <acronym><acronymword>ARM</acronymword></acronym>.
-Thinking they might prove useful as tools or templates to others,
-it is my pleasure to provide them freely to the scientific community.
-Many users (most of whom I have never met) have encouraged the
-development of <acronym><acronymword>NCO</acronymword></acronym>.
-Thanks espcially to Jan Polcher, Keith Lindsay, Arlindo <w>da Silva</w>,
-John Sheldon, and William Weibel for stimulating suggestions and
-correspondence.
-Your encouragment motivated me to complete the <cite>NCO User Guide</cite>.
-So if you like <acronym><acronymword>NCO</acronymword></acronym>, send me a note!
-<w>I should</w> mention that <acronym><acronymword>NCO</acronymword></acronym> is not connected to or
-officially endorsed by Unidata, <acronym><acronymword>ACD</acronymword></acronym>, <acronym><acronymword>ASP</acronymword></acronym>,
-<acronym><acronymword>CGD</acronymword></acronym>, or Nike.&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<noindent></noindent>
-<para>Charlie Zender&linebreak;
-May 1997&linebreak;
-Boulder, Colorado&linebreak;
-</para>
-<sp value="2" line=" 2"></sp>
-<para>Major feature improvements entitle me to write another Foreword.
-In the last five years a lot of work has been done to refine
-<acronym><acronymword>NCO</acronymword></acronym>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="3">open source</indexterm></cindex>
-<acronym><acronymword>NCO</acronymword></acronym> is now an open source project and appears to be much
-healthier for it.
-The list of illustrious institutions that do not endorse <acronym><acronymword>NCO</acronymword></acronym>
-continues to grow, and now includes <acronym><acronymword>UCI</acronymword></acronym>.&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<noindent></noindent>
-<para>Charlie Zender&linebreak;
-October 2000&linebreak;
-Irvine, California&linebreak;
-</para>
-<sp value="2" line=" 2"></sp>
-<para>The most remarkable advances in <acronym><acronymword>NCO</acronymword></acronym> capabilities in the last
-few years are due to contributions from the Open Source community.
-Especially noteworthy are the contributions of Henry Butowsky and Rorik
-Peterson.&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<noindent></noindent>
-<para>Charlie Zender&linebreak;
-January 2003&linebreak;
-Irvine, California&linebreak;
-</para>
-<sp value="2" line=" 2"></sp>
-<para><acronym><acronymword>NCO</acronymword></acronym> was generously supported from 2004&textndash;2008 by US
-National Science Foundation (<acronym><acronymword>NSF</acronymword></acronym>) grant
-<uref><urefurl>http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0431203</urefurl><urefdesc>IIS-0431203</urefdesc></uref>.
-This support allowed me to maintain and extend core <acronym><acronymword>NCO</acronymword></acronym> code,
-and others to advance <acronym><acronymword>NCO</acronymword></acronym> in new directions:
-Gayathri Venkitachalam helped implement <acronym><acronymword>MPI</acronymword></acronym>;
-Harry Mangalam improved regression testing and benchmarking;
-Daniel Wang developed the server-side capability, <acronym><acronymword>SWAMP</acronymword></acronym>;
-and Henry Butowsky, a long-time contributor, developed <command>ncap2</command>.
-This support also led <acronym><acronymword>NCO</acronymword></acronym> to debut in professional journals
-and meetings.
-The personal and professional contacts made during this evolution have
-been immensely rewarding.&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<noindent></noindent>
-<para>Charlie Zender&linebreak;
-March 2008&linebreak;
-Grenoble, France&linebreak;
-</para>
-<sp value="2" line=" 2"></sp>
-<para>The end of the <acronym><acronymword>NSF</acronymword></acronym> <acronym><acronymword>SEI</acronymword></acronym> grant in August, 2008 curtailed
-<acronym><acronymword>NCO</acronymword></acronym> development.
-Fortunately we could justify supporting Henry Butowsky on other research
-grants until May, 2010 while he developed the key <command>ncap2</command>
-features used in our climate research.
-And recently the <acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>ACCESS</acronymword></acronym> program commenced
-funding us to support netCDF4 group functionality.
-Thus <acronym><acronymword>NCO</acronymword></acronym> will grow and evade bit-rot for the foreseeable
-future.
-</para>
-<para>I continue to receive with gratitude the thanks of <acronym><acronymword>NCO</acronymword></acronym> users
-at nearly every scientific meeting I attend.
-People introduce themselves, shake my hand and extol <acronym><acronymword>NCO</acronymword></acronym>,
-often effusively, while I grin in stupid embarassment.
-These exchanges lighten me like anti-gravity.
-Sometimes I daydream how many hours <acronym><acronymword>NCO</acronymword></acronym> has turned from grunt
-work to productive research for researchers world-wide, or from research
-into early happy-hours.
-It&textrsquo;s a cool feeling.
-</para>
-<sp value="1" line=" 1"></sp>
-<noindent></noindent>
-<para>Charlie Zender&linebreak;
-April, 2012&linebreak;
-Irvine, California&linebreak;
-</para>
-<ignore>
- at sp 2
-The @acronym{NASA} @acronym{ACCESS} 2011 program generously supported
-(Cooperative Agreement NNX12AF48A) @acronym{NCO} from 2012--2015.
-We accomplished our goals and produced the first iteration of a
-Group-oriented Data Analysis and Distribution (@acronym{GODAD}) software
-ecosystem.
-Shifting geoscience data analysis to @acronym{GODAD}, no small task,
-drives our plans.
-Partly due to this success, the @acronym{NASA} @acronym{ACCESS} 2013
-program agreed to support (Cooperative Agreement NNX14AH55A)
- at acronym{NCO} from 2014--2016.
-This support will allow us to implement support for Swath-like Data
-(@acronym{SLD}) and re-gridding.
-
- at sp 1
- at noindent
-Charlie Zender@*
-June, 2014@*
-Irvine, California@*
-</ignore>
-
-<html endspaces=" ">
-<a name="smr"></a> <!&textndash; http://nco.sf.net/nco.html#smr &textndash;>
-</html>
-</unnumbered>
-<node name="Summary" spaces=" "><nodename>Summary</nodename><nodenext spaces=" ">Introduction</nodenext><nodeprev spaces=" ">Foreword</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<unnumbered spaces=" "><sectiontitle>Summary</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="4">operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="5">summary</indexterm></cindex>
-<para>This manual describes <acronym><acronymword>NCO</acronymword></acronym>, which stands for netCDF Operators.
-<acronym><acronymword>NCO</acronymword></acronym> is a suite of programs known as <dfn>operators</dfn>.
-Each operator is a standalone, command line program executed at the
-shell-level like, e.g., <command>ls</command> or <command>mkdir</command>.
-The operators take netCDF files (including <acronym><acronymword>HDF5</acronymword></acronym> files
-constructed using the netCDF <acronym><acronymword>API</acronymword></acronym>) as input, perform an
-operation (e.g., averaging or hyperslabbing), and produce a netCDF file
-as output.
-The operators are primarily designed to aid manipulation and analysis of
-data.
-The examples in this documentation are typical applications of the
-operators for processing climate model output.
-This stems from their origin, though the operators are as general as
-netCDF itself.
-</para>
-<html endspaces=" ">
-<a name="ntr"></a> <!&textndash; http://nco.sf.net/nco.html#ntr &textndash;>
-</html>
-</unnumbered>
-<node name="Introduction" spaces=" "><nodename>Introduction</nodename><nodenext spaces=" ">Strategies</nodenext><nodeprev spaces=" ">Summary</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Introduction</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="6">introduction</indexterm></cindex>
-
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Availability</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">How to Use This guide</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Compatability</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Symbolic Links</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Libraries</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">netCDF2/3/4 and HDF4/5 Support</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Help Requests and Bug Reports</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Availability" spaces=" "><nodename>Availability</nodename><nodenext spaces=" ">How to Use This guide</nodenext><nodeprev spaces=" ">Introduction</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>Availability</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="7"><acronym><acronymword>NCO</acronymword></acronym> availability</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="8">source code</indexterm></cindex>
-<para>The complete <acronym><acronymword>NCO</acronymword></acronym> source distribution is currently distributed
-as a <dfn>compressed tarfile</dfn> from
-<uref><urefurl>http://sf.net/projects/nco</urefurl></uref>
-and from
-<uref><urefurl>http://dust.ess.uci.edu/nco/nco.tar.gz</urefurl></uref>.
-The compressed tarfile must be uncompressed and untarred before building
-<acronym><acronymword>NCO</acronymword></acronym>.
-Uncompress the file with <samp>gunzip nco.tar.gz</samp>.
-Extract the source files from the resulting tarfile with <samp>tar -xvf
-nco.tar</samp>.
-<acronym><acronymword>GNU</acronymword></acronym> <code>tar</code> lets you perform both operations in one step
-with <samp>tar -xvzf nco.tar.gz</samp>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="9">documentation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="10"><acronym><acronymword>WWW</acronymword></acronym> documentation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="11">on-line documentation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="12"><acronym><acronymword>HTML</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="13">&tex;info</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="14">Info</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="15"><cite>User Guide</cite></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="16"><cite>NCO User Guide</cite></indexterm></cindex>
-<para>The documentation for <acronym><acronymword>NCO</acronymword></acronym> is called the
-<cite>NCO User Guide</cite>.
-The <cite>User Guide</cite> is available in <acronym><acronymword>PDF</acronymword></acronym>, Postscript,
-<acronym><acronymword>HTML</acronymword></acronym>, <acronym><acronymword>DVI</acronymword></acronym>, &tex;info, and Info formats.
-These formats are included in the source distribution in the files
-<file>nco.pdf</file>, <file>nco.ps</file>, <file>nco.html</file>, <file>nco.dvi</file>,
-<file>nco.texi</file>, and <file>nco.info*</file>, respectively.
-All the documentation descends from a single source file,
-<file>nco.texi</file>
-<footnote spaces=" \n"><para>To produce these formats, <file>nco.texi</file> was simply run through the
-freely available programs <code>texi2dvi</code>, <code>dvips</code>,
-<code>texi2html</code>, and <code>makeinfo</code>.
-Due to a bug in &tex;, the resulting Postscript file, <file>nco.ps</file>,
-contains the Table of Contents as the final pages.
-Thus if you print <file>nco.ps</file>, remember to insert the Table of
-Contents after the cover sheet before you staple the manual.
-</para></footnote>.
-Hence the documentation in every format is very similar.
-However, some of the complex mathematical expressions needed to describe
-<command>ncwa</command> can only be displayed in <acronym><acronymword>DVI</acronymword></acronym>, Postscript, and
-<acronym><acronymword>PDF</acronymword></acronym> formats.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="17">publications</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="18">presentations</indexterm></cindex>
-<para>A complete list of papers and publications on/about <acronym><acronymword>NCO</acronymword></acronym>
-is available on the <acronym><acronymword>NCO</acronymword></acronym> homepage.
-Most of these are freely available.
-<!-- c 20130526 fxm Replace mybibnode with @mybibnode{} -->
-<!-- c 20130526 Doing so, unfortunately, produces error "TeX capacity exceeded, sorry [input stack size=5000]." -->
-<!-- c 20130526 Denude document of @mybibcite{} until it works -->
-<!-- c The primary refereed publications are @mybibcite{ZeM06} and @mybibcite{Zen08}. -->
-The primary refereed publications are ZeM06 and Zen08.
-These contain copyright restrictions which limit their redistribution,
-but they are freely available in preprint form from the <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="19"><acronym><acronymword>NCO</acronymword></acronym> homepage</indexterm></cindex>
-<para>If you want to quickly see what the latest improvements in <acronym><acronymword>NCO</acronymword></acronym>
-are (without downloading the entire source distribution), visit the
-<acronym><acronymword>NCO</acronymword></acronym> homepage at
-<uref><urefurl>http://nco.sf.net</urefurl></uref>.
-The <acronym><acronymword>HTML</acronymword></acronym> version of the <cite>User Guide</cite> is also available
-online through the World Wide Web at <acronym><acronymword>URL</acronymword></acronym>
-<uref><urefurl>http://nco.sf.net/nco.html</urefurl></uref>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="20">netCDF</indexterm></cindex>
-To build and use <acronym><acronymword>NCO</acronymword></acronym>, you must have netCDF installed.
-The netCDF homepage is
-<uref><urefurl>http://www.unidata.ucar.edu/packages/netcdf</urefurl></uref>.
-</para>
-<para>New <acronym><acronymword>NCO</acronymword></acronym> releases are announced on the netCDF list
-and on the <code>nco-announce</code> mailing list
-<uref><urefurl>http://lists.sf.net/mailman/listinfo/nco-announce</urefurl></uref>.
-</para>
-<ignore>
-This tests incorporates an image using the @code{@@image} command.
- at image{/data/zender/ps/odxc,6in,}
-</ignore>
-
-</section>
-<node name="How-to-Use-This-guide" spaces=" "><nodename>How to Use This guide</nodename><nodenext spaces=" ">Compatability</nodenext><nodeprev spaces=" ">Availability</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>How to Use This Guide</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="21">contents</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="22">introduction</indexterm></cindex>
-<para>Detailed instructions about
-<uref><urefurl>http://nco.sf.net/#Source</urefurl><urefdesc spaces=" ">how to download the newest version</urefdesc></uref>,
-and <uref><urefurl>http://nco.sf.net/#bld</urefurl><urefdesc spaces=" ">how to complie source code</urefdesc></uref>,
-as well as a <uref><urefurl>http://nco.sf.net/#FAQ</urefurl><urefdesc spaces=" "><acronym><acronymword>FAQ</acronymword></acronym></urefdesc></uref> and
-descriptions of <uref><urefurl>http://nco.sf.net/#bug</urefurl><urefdesc spaces=" ">Known Problems</urefdesc></uref> etc.
-are on our homepage
-(<uref><urefurl>http://nco.sf.net/</urefurl></uref>).
-</para>
-<para>There are twelve operators in the current version (4.4.8).
-The function of each is explained in <ref label="Reference-Manual"><xrefnodename>Reference Manual</xrefnodename><xrefinfoname spaces=" ">Reference Manual</xrefinfoname></ref>.
-Many of the tasks that <acronym><acronymword>NCO</acronymword></acronym> can accomplish are described during
-the explanation of common <acronym><acronymword>NCO</acronymword></acronym> Features (<pxref label="Shared-features"><xrefnodename>Shared features</xrefnodename></pxref>).
-More specific use examples for each operator can be seen by visiting the
-operator-specific examples in the <ref label="Reference-Manual"><xrefnodename>Reference Manual</xrefnodename></ref>.
-These can be found directly by prepending the operator name with the
-<code>xmp_</code> tag, e.g., <uref><urefurl>http://nco.sf.net/nco.html#xmp_ncks</urefurl></uref>.
-Also, users can type the operator name on the shell command line to
-see all the available options, or type, e.g., <samp>man ncks</samp> to see
-a help man-page.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> is a command-line language.
-You may either use an operator after the prompt (e.g., <samp>$</samp> here),
-like,
-</para><example endspaces=" ">
-<pre xml:space="preserve">$ <command>operator</command> <option>[options]</option> <file>input</file> <file>[output]</file>
-</pre></example>
-<para>or write all commands lines into a shell script, as in
-the <acronym><acronymword>CMIP5</acronymword></acronym> Example (<pxref label="CMIP5-Example"><xrefnodename>CMIP5 Example</xrefnodename></pxref>).
-</para>
-<para>If you are new to <acronym><acronymword>NCO</acronymword></acronym>, the Quick Start (<pxref label="Quick-Start"><xrefnodename>Quick Start</xrefnodename></pxref>)
-shows simple examples about how to use <acronym><acronymword>NCO</acronymword></acronym> on different kinds
-of data files.
-More detailed &textldquo;real-world&textrdquo; examples are in the
-<ref label="CMIP5-Example"><xrefnodename>CMIP5 Example</xrefnodename><xrefinfoname spaces=" "><acronym><acronymword>CMIP5</acronymword></acronym> Example</xrefinfoname></ref>.
-The <ref label="General-Index"><xrefnodename>General Index</xrefnodename><xrefinfoname spaces=" ">Index</xrefinfoname></ref> is presents multiple keyword entries for
-the same subject.
-If these resources do not help enough, please
-<pxref label="Help-Requests-and-Bug-Reports"><xrefnodename>Help Requests and Bug Reports</xrefnodename></pxref>.
-</para>
-</section>
-<node name="Compatability" spaces=" "><nodename>Compatability</nodename><nodenext spaces=" ">Symbolic Links</nodenext><nodeprev spaces=" ">How to Use This guide</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>Operating systems compatible with <acronym><acronymword>NCO</acronymword></acronym></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="23"><acronym><acronymword>OS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="24"><acronym><acronymword>IBM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="25"><acronym><acronymword>NEC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="26"><acronym><acronymword>SGI</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="27"><acronym><acronymword>HP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="28"><acronym><acronymword>DEC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="29"><acronym><acronymword>PGI</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="30">Cray</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="31">Digital</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="32">Sun</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="33">Intel</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="34">Comeau</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="35">Compaq</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="36">Macintosh</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="37">Microsoft</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="38">Windows</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="39">PathScale</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="40">QLogic</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="41">compatability</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="42">portability</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="43">installation</indexterm></cindex>
-<para>In its time on Earth, <acronym><acronymword>NCO</acronymword></acronym> has been successfully ported and
-tested on so many 32- and 64-bit platforms that if we did not write
-them down here we would forget their names:
-<!-- c alphabetize by OS name -->
-<acronym><acronymword>IBM AIX</acronymword></acronym> 4.x, 5.x,
-FreeBSD 4.x,
-<acronym><acronymword>GNU</acronymword></acronym>/Linux 2.x, LinuxPPC, LinuxAlpha, LinuxARM, LinuxSparc64,
-LinuxAMD64,
-<acronym><acronymword>SGI IRIX</acronymword></acronym> 5.x and 6.x,
-<w>MacOS X</w> 10.x,
-<acronym><acronymword>DEC OSF</acronymword></acronym>,
-<acronym><acronymword>NEC</acronymword></acronym> Super-UX 10.x,
-Sun SunOS 4.1.x, Solaris 2.x,
-<acronym><acronymword>Cray UNICOS</acronymword></acronym> 8.x&textndash;10.x,
-and Microsoft Windows (95, 98, <acronym><acronymword>NT</acronymword></acronym>, 2000, <acronym><acronymword>XP</acronymword></acronym>, Vista,
-7, 8, 10).
-If you port the code to a new operating system, please send me a note
-and any patches you required.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="44"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="45">Unidata</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="46">UDUnits</indexterm></cindex>
-<para>The major prerequisite for installing <acronym><acronymword>NCO</acronymword></acronym> on a particular
-platform is the successful, prior installation of the netCDF library
-(and, as of 2003, the UDUnits library).
-Unidata has shown a commitment to maintaining netCDF and UDUnits on all
-popular <acronym><acronymword>UNIX</acronymword></acronym> platforms, and is moving towards full support for
-the Microsoft Windows operating system (<acronym><acronymword>OS</acronymword></acronym>).
-Given this, the only difficulty in implementing <acronym><acronymword>NCO</acronymword></acronym> on a
-particular platform is standardization of various <w>C</w>-language API
-system calls.
-<acronym><acronymword>NCO</acronymword></acronym> code is tested for <acronym><acronymword>ANSI</acronymword></acronym> compliance by
-compiling with <w>C99 compilers</w> including those from
-<cindex index="cp" spaces=" "><indexterm index="cp" number="47"><command>CC</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="48"><command>c++</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="49"><command>cc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="50"><command>clang</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="51"><command>como</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="52"><command>cxx</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="53"><command>gcc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="54"><command>g++</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="55"><command>icc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="56"><command>MVS</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="57"><command>pgcc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="58"><command>pgCC</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="59"><command>pathcc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="60"><command>pathCC</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="61"><command>xlC</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="62"><command>xlc</command></indexterm></cindex>
-<acronym><acronymword>GNU</acronymword></acronym> (<samp>gcc -std=c99 -pedantic -D_BSD_SOURCE -D_POSIX_SOURCE</samp> -Wall)
-<footnote spaces="\n"><para>The <samp>_BSD_SOURCE</samp> token is required on some Linux platforms where
-<command>gcc</command> dislikes the network header files like
-<file>netinet/in.h</file>).</para></footnote>,
-Comeau Computing (<samp>como --c99</samp>),
-Cray (<samp>cc</samp>),
-<acronym><acronymword>HP</acronymword></acronym>/Compaq/<acronym><acronymword>DEC</acronymword></acronym> (<samp>cc</samp>),
-<acronym><acronymword>IBM</acronymword></acronym> (<samp>xlc -c -qlanglvl=extc99</samp>),
-Intel (<samp>icc -std=c99</samp>),
-<cindex index="cp" spaces=" "><indexterm index="cp" number="63"><acronym><acronymword>LLVM</acronymword></acronym></indexterm></cindex>
-<acronym><acronymword>LLVM</acronymword></acronym> (<samp>clang</samp>),
-<acronym><acronymword>NEC</acronymword></acronym> (<samp>cc</samp>),
-PathScale (QLogic) (<samp>pathcc -std=c99</samp>),
-<acronym><acronymword>PGI</acronymword></acronym> (<samp>pgcc -c9x</samp>),
-<acronym><acronymword>SGI</acronymword></acronym> (<samp>cc -c99</samp>),
-and
-Sun (<samp>cc</samp>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="64">C++</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="65"><acronym><acronymword>ISO</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="66"><command>libnco</command></indexterm></cindex>
-<acronym><acronymword>NCO</acronymword></acronym> (all commands and the <command>libnco</command> library) and
-the C++ interface to netCDF (called <command>libnco_c++</command>) comply with
-the <acronym><acronymword>ISO</acronymword></acronym> C++ standards as implemented by
-Comeau Computing (<samp>como</samp>),
-Cray (<samp>CC</samp>),
-<acronym><acronymword>GNU</acronymword></acronym> (<samp>g++ -Wall</samp>),
-<acronym><acronymword>HP</acronymword></acronym>/Compaq/<acronym><acronymword>DEC</acronymword></acronym> (<samp>cxx</samp>),
-<acronym><acronymword>IBM</acronymword></acronym> (<samp>xlC</samp>),
-Intel (<samp>icc</samp>),
-Microsoft (<samp>MVS</samp>),
-<acronym><acronymword>NEC</acronymword></acronym> (<samp>c++</samp>),
-PathScale (Qlogic) (<samp>pathCC</samp>),
-<acronym><acronymword>PGI</acronymword></acronym> (<samp>pgCC</samp>),
-<acronym><acronymword>SGI</acronymword></acronym> (<samp>CC -LANG:std</samp>),
-and
-Sun (<samp>CC -LANG:std</samp>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="67"><file>Makefile</file></indexterm></cindex>
-See <file>nco/bld/Makefile</file> and <file>nco/src/nco_c++/Makefile.old</file> for
-more details and exact settings.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="68"><acronym><acronymword>ANSI</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="69">C89</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="70"><code>printf</code></indexterm></cindex>
-<para>Until recently (and not even yet), <acronym><acronymword>ANSI</acronymword></acronym>-compliant has meant
-compliance with the 1989 <acronym><acronymword>ISO</acronymword></acronym> C-standard, usually called C89 (with
-minor revisions made in 1994 and 1995).
-C89 lacks variable-size arrays, restricted pointers, some useful
-<code>printf</code> formats, and many mathematical special functions.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="71">C99</indexterm></cindex>
-These are valuable features of C99, the 1999 <acronym><acronymword>ISO</acronymword></acronym> C-standard.
-<acronym><acronymword>NCO</acronymword></acronym> is C99-compliant where possible and C89-compliant where
-necessary.
-Certain branches in the code are required to satisfy the native
-<acronym><acronymword>SGI</acronymword></acronym> and SunOS <w>C compilers</w>, which are strictly <acronym><acronymword>ANSI</acronymword></acronym>
-C89 compliant, and cannot benefit from C99 features.
-However, C99 features are fully supported by modern <acronym><acronymword>AIX</acronymword></acronym>,
-<acronym><acronymword>GNU</acronymword></acronym>, Intel, <acronym><acronymword>NEC</acronymword></acronym>, Solaris, and <acronym><acronymword>UNICOS</acronymword></acronym>
-compilers.
-<acronym><acronymword>NCO</acronymword></acronym> requires a C99-compliant compiler as of <acronym><acronymword>NCO</acronymword></acronym>
-<w>version 2.9.8</w>, released in August, 2004.
-</para>
-<para>The most time-intensive portion of <acronym><acronymword>NCO</acronymword></acronym> execution is spent in
-arithmetic operations, e.g., multiplication, averaging, subtraction.
-These operations were performed in Fortran by default until August,
-1999.
-This was a design decision based on the relative speed of Fortran-based
-object code vs.&noeos; C-based object code in late 1994.
-<w>C compiler</w> vectorization capabilities have dramatically improved
-since 1994.
-We have accordingly replaced all Fortran subroutines with <w>C functions</w>.
-This greatly simplifies the task of building <acronym><acronymword>NCO</acronymword></acronym> on nominally
-unsupported platforms.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="72">C language</indexterm></cindex>
-As of August 1999, <acronym><acronymword>NCO</acronymword></acronym> built entirely <w>in C</w> by default.
-This allowed <acronym><acronymword>NCO</acronymword></acronym> to compile on any machine with an
-<acronym><acronymword>ANSI</acronymword></acronym> <w>C compiler</w>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="73">C99</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="74">C89</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="75"><code>restrict</code></indexterm></cindex>
-In August 2004, the first C99 feature, the <code>restrict</code> type
-qualifier, entered <acronym><acronymword>NCO</acronymword></acronym> in version 2.9.8.
-<w>C compilers</w> can obtain better performance with C99 restricted
-pointers since they inform the compiler when it may make Fortran-like
-assumptions regarding pointer contents alteration.
-Subsequently, <acronym><acronymword>NCO</acronymword></acronym> requires a C99 compiler to build correctly
-<footnote><para><acronym><acronymword>NCO</acronymword></acronym> may still build with an
-<acronym><acronymword>ANSI</acronymword></acronym> or <acronym><acronymword>ISO</acronymword></acronym> C89 or C94/95-compliant compiler if the
-<w>C pre-processor</w> undefines the <code>restrict</code> type qualifier, e.g.,
-by invoking the compiler with <samp>-Drestrict=''</samp>.</para></footnote>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="76"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="1" mergedindex="cp">ncap2</indexterm></findex>
-<para>In January 2009, <acronym><acronymword>NCO</acronymword></acronym> version 3.9.6 was the first to link
-to the <acronym><acronymword>GNU</acronymword></acronym> Scientific Library (<acronym><acronymword>GSL</acronymword></acronym>).
-<acronym><acronymword>GSL</acronymword></acronym> must be <w>version 1.4</w> or later.
-<acronym><acronymword>NCO</acronymword></acronym>, in particular <command>ncap2</command>, uses the <acronym><acronymword>GSL</acronymword></acronym>
-special function library to evaluate geoscience-relevant mathematics
-such as Bessel functions, Legendre polynomials, and incomplete gamma
-functions (<pxref label="GSL-special-functions"><xrefnodename>GSL special functions</xrefnodename></pxref>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="77"><var>gamma</var></indexterm></cindex>
-<para>In June 2005, <acronym><acronymword>NCO</acronymword></acronym> version 3.0.1 began to take advantage
-of C99 mathematical special functions.
-These include the standarized gamma function (called <code>tgamma()</code>
-for &textldquo;true gamma&textrdquo;).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="78">automagic</indexterm></cindex>
-<acronym><acronymword>NCO</acronymword></acronym> automagically takes advantage of some <acronym><acronymword>GNU</acronymword></acronym>
-Compiler Collection (<acronym><acronymword>GCC</acronymword></acronym>) extensions to <w><acronym><acronymword>ANSI</acronymword></acronym> C</w>.
-</para>
-<para>As of July 2000 and <acronym><acronymword>NCO</acronymword></acronym> <w>version 1.2</w>, <acronym><acronymword>NCO</acronymword></acronym> no
-longer performs arithmetic operations in Fortran.
-We decided to sacrifice executable speed for code maintainability.
-Since no objective statistics were ever performed to quantify
-the difference in speed between the Fortran and <w>C code</w>,
-the performance penalty incurred by this decision is unknown.
-Supporting Fortran involves maintaining two sets of routines for every
-arithmetic operation.
-The <code>USE_FORTRAN_ARITHMETIC</code> flag is still retained in the
-<file>Makefile</file>.
-The file containing the Fortran code, <file>nco_fortran.F</file>, has been
-deprecated but a volunteer (<w>Dr.&noeos; Frankenstein</w>?) could resurrect it.
-If you would like to volunteer to maintain <file>nco_fortran.F</file> please
-contact me.
-</para>
-<!-- c Following section is obsolete -->
-<ignore>
-It is still possible to request Fortran routines to perform arithmetic
-operations, however.
- at cindex preprocessor tokens
- at cindex @code{USE_FORTRAN_ARITHMETIC}
-This can be accomplished by defining the preprocessor token
- at code{USE_FORTRAN_ARITHMETIC} and rebuilding @acronym{NCO}.
- at cindex performance
-As its name suggests, the @code{USE_FORTRAN_ARITHMETIC} token instructs
- at acronym{NCO} to attempts to interface the @w{C routines} with Fortran
-arithmetic.
-Although using Fortran calls instead @w{of C} reduces the portability and
-and increases the maintenance of the @acronym{NCO} operators, it may
-also increase the performance of the numeric operators.
-Presumably this will depend on your machine type, the quality of @w{the C}
-and Fortran compilers, and the size of the data files
- at footnote{If you decide to test the efficiency of the averagers compiled
-with @code{USE_FORTRAN_ARITHMETIC} versus the default @w{C averagers} I
-would be most interested to hear the results.
-Please E-mail me the results including the size of the datasets, the
-platform, and the change in the wallclock time for execution.}.
-</ignore>
-
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Windows Operating System</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="wnd"></a> <!&textndash; http://nco.sf.net/nco.html#wnd &textndash;>
-<a name="windows"></a> <!&textndash; http://nco.sf.net/nco.html#windows &textndash;>
-<a name="qt"></a> <!&textndash; http://nco.sf.net/nco.html#qt &textndash;>
-</html>
-<node name="Windows-Operating-System" spaces=" "><nodename>Windows Operating System</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Compatability</nodeprev><nodeup spaces=" ">Compatability</nodeup></node>
-<subsection spaces=" "><sectiontitle>Compiling <acronym><acronymword>NCO</acronymword></acronym> for Microsoft Windows <acronym><acronymword>OS</acronymword></acronym></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="79">Windows</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="80">Microsoft</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="81"><acronym><acronymword>XP</acronymword></acronym> (Microsoft operating system)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="82"><acronym><acronymword>NT</acronymword></acronym> (Microsoft operating system)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="83">Vista (Microsoft operating system)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="84"><acronym><acronymword>MVS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="85">Microsoft Visual Studio</indexterm></cindex>
-
-<para><acronym><acronymword>NCO</acronymword></acronym> has been successfully ported and tested on most Microsoft
-Windows operating systems including: <acronym><acronymword>XP</acronymword></acronym> SP2/Vista/7.
-Support is provided for compiling either native Windows executables,
-using the Microsoft Visual Studio 2010 Compiler, or with Cygwin, the
-<acronym><acronymword>UNIX</acronymword></acronym>-emulating compatibility layer with the <acronym><acronymword>GNU</acronymword></acronym> toolchain.
-The switches necessary to accomplish both are included in the standard
-distribution of <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="86">Qt</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="87">C99</indexterm></cindex>
-<para>Using Microsoft Visual Studio (<acronym><acronymword>MVS</acronymword></acronym>), one must build
-<acronym><acronymword>NCO</acronymword></acronym> with the C++ compiler since <acronym><acronymword>MVS</acronymword></acronym> does not support C99.
-Qt, a convenient integrated development environment, was used to convert
-the project files to <acronym><acronymword>MVS</acronymword></acronym> format.
-The Qt files themselves are distributed in the <file>nco/qt</file> directory.
-</para>
-<para>Using the freely available Cygwin (formerly gnu-win32) development
-environment
-<footnote><para>The Cygwin package is available from&linebreak;
-<code>http://sourceware.redhat.com/cygwin</code>&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="88"><code>gcc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="89"><code>g++</code></indexterm></cindex>
-Currently, <w>Cygwin 20.x</w> comes with the <acronym><acronymword>GNU</acronymword></acronym> C/C++
-compilers (<command>gcc</command>, <command>g++</command>.
-These <acronym><acronymword>GNU</acronymword></acronym> compilers may be used to build the netCDF
-distribution itself.</para></footnote>, the compilation process is very similar to
-installing <acronym><acronymword>NCO</acronymword></acronym> on a <acronym><acronymword>UNIX</acronymword></acronym> system.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="90">preprocessor tokens</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="91">Cygwin</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="92"><code>gnu-win32</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="93"><code>WIN32</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="94"><file>GNUmakefile</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="95"><file>Makefile</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="96"><code>f90</code></indexterm></cindex>
-Set the <code>PVM_ARCH</code> preprocessor token to <code>WIN32</code>.
-Note that defining <code>WIN32</code> has the side effect of disabling
-Internet features of <acronym><acronymword>NCO</acronymword></acronym> (see below).
-<acronym><acronymword>NCO</acronymword></acronym> should now build like it does on <acronym><acronymword>UNIX</acronymword></acronym>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="97"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="98"><code>getuid</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="99"><code>gethostname</code></indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="2" mergedindex="cp"><file><arpa/nameser.h></file></indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="3" mergedindex="cp"><file><resolv.h></file></indexterm></findex>
-<para>The least portable section of the code is the use of standard
-<acronym><acronymword>UNIX</acronymword></acronym> and Internet protocols (e.g., <code>ftp</code>, <code>rcp</code>,
-<code>scp</code>, <code>sftp</code>, <code>getuid</code>, <code>gethostname</code>, and header
-files <file><arpa/nameser.h></file> and
-<file><resolv.h></file>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="100"><code>ftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="101"><code>sftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="102"><code>rcp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="103"><code>scp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="104"><acronym><acronymword>SSH</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="105">remote files</indexterm></cindex>
-Fortunately, these <acronym><acronymword>UNIX</acronymword></acronym>-y calls are only invoked by the single
-<acronym><acronymword>NCO</acronymword></acronym> subroutine which is responsible for retrieving files
-stored on remote systems (<pxref label="Remote-storage"><xrefnodename>Remote storage</xrefnodename></pxref>).
-In order to support <acronym><acronymword>NCO</acronymword></acronym> on the Microsoft Windows platforms,
-this single feature was disabled (on Windows <acronym><acronymword>OS</acronymword></acronym> only).
-This was required by <w>Cygwin 18.x</w>&textmdash;newer versions of Cygwin may
-support these protocols (let me know if this is the case).
-The <acronym><acronymword>NCO</acronymword></acronym> operators should behave identically on Windows and
-<acronym><acronymword>UNIX</acronymword></acronym> platforms in all other respects.
-</para>
-<html endspaces=" ">
-<a name="sym"></a> <!&textndash; http://nco.sf.net/nco.html#sym &textndash;>
-</html>
-</subsection>
-</section>
-<node name="Symbolic-Links" spaces=" "><nodename>Symbolic Links</nodename><nodenext spaces=" ">Libraries</nodenext><nodeprev spaces=" ">Compatability</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>Symbolic Links</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="106">symbolic links</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> relies on a common set of underlying algorithms.
-To minimize duplication of source code, multiple operators sometimes
-share the same underlying source.
-This is accomplished by symbolic links from a single underlying
-executable program to one or more invoked executable names.
-For example, <command>nces</command> and <command>ncrcat</command> are symbolically linked
-to the <command>ncra</command> executable.
-The <command>ncra</command> executable behaves slightly differently based on its
-invocation name (i.e., <samp>argv[0]</samp>), which can be
-<command>nces</command>, <command>ncra</command>, or <command>ncrcat</command>.
-Logically, these are three different operators that happen to share
-the same executable.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="107">Cygwin</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="108">synonym</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="109">pseudonym</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="110"><code>--pseudonym</code></indexterm></cindex>
-<para>For historical reasons, and to be more user friendly, multiple synonyms
-(or pseudonyms) may refer to the same operator invoked with different
-switches.
-For example, <command>ncdiff</command> is the same as <command>ncbo</command> and
-<command>ncpack</command> is the same as <command>ncpdq</command>.
-We implement the symbolic links and synonyms by the executing the
-following <acronym><acronymword>UNIX</acronymword></acronym> commands in the directory where the
-<acronym><acronymword>NCO</acronymword></acronym> executables are installed.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ln -s -f ncbo ncdiff # ncbo --op_typ='+'
-ln -s -f ncra nces # ncra --pseudonym='nces'
-ln -s -f ncra ncrcat # ncra --pseudonym='ncrcat'
-ln -s -f ncbo ncadd # ncbo --op_typ='+'
-ln -s -f ncbo ncsubtract # ncbo --op_typ='-'
-ln -s -f ncbo ncmultiply # ncbo --op_typ='*'
-ln -s -f ncbo ncdivide # ncbo --op_typ='/'
-ln -s -f ncpdq ncpack # ncpdq
-ln -s -f ncpdq ncunpack # ncpdq --unpack
-# NB: Windows/Cygwin executable/link names have '.exe' suffix, e.g.,
-ln -s -f ncbo.exe ncdiff.exe
-...
-</pre></example>
-<para>The imputed command called by the link is given after the comment.
-As can be seen, some these links impute the passing of a command line
-argument to further modify the behavior of the underlying executable.
-For example, <command>ncdivide</command> is a pseudonym for
-<command>ncbo --op_typ='/'</command>.
-</para>
-<html endspaces=" ">
-<a name="lbr"></a> <!&textndash; http://nco.sf.net/nco.html#lbr &textndash;>
-</html>
-</section>
-<node name="Libraries" spaces=" "><nodename>Libraries</nodename><nodenext spaces=" ">netCDF2/3/4 and HDF4/5 Support</nodenext><nodeprev spaces=" ">Symbolic Links</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>Libraries</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="111">libraries</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="112"><code>LD_LIBRARY_PATH</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="113">dynamic linking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="114">static linking</indexterm></cindex>
-<para>Like all executables, the <acronym><acronymword>NCO</acronymword></acronym> operators can be built using dynamic
-linking.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="115">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="116">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="117">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="118">execution time</indexterm></cindex>
-This reduces the size of the executable and can result in significant
-performance enhancements on multiuser systems.
-Unfortunately, if your library search path (usually the
-<env>LD_LIBRARY_PATH</env> environment variable) is not set correctly, or if
-the system libraries have been moved, renamed, or deleted since
-<acronym><acronymword>NCO</acronymword></acronym> was installed, it is possible <acronym><acronymword>NCO</acronymword></acronym> operators
-will fail with a message that they cannot find a dynamically loaded (aka
-<dfn>shared object</dfn> or <samp>.so</samp>) library.
-This will produce a distinctive error message, such as
-<samp>ld.so.1:&hyphenbreak; /usr/local/bin/nces:&hyphenbreak; fatal:&hyphenbreak; libsunmath.&hyphenbreak;so.1:&hyphenbreak; can't
-open&hyphenbreak; file:&hyphenbreak; errno&hyphenbreak;=2</samp>.
-If you received an error message like this, ask your system
-administrator to diagnose whether the library is truly missing
-<footnote><para>The <command>ldd</command> command, if it is available on your system,
-will tell you where the executable is looking for each dynamically
-loaded library. Use, e.g., <code>ldd `which nces`</code>.</para></footnote>, or whether you
-simply need to alter your library search path.
-As a final remedy, you may re-compile and install <acronym><acronymword>NCO</acronymword></acronym> with all
-operators statically linked.
-</para>
-</section>
-<node name="netCDF2_002f3_002f4-and-HDF4_002f5-Support" spaces=" "><nodename>netCDF2/3/4 and HDF4/5 Support</nodename><nodenext spaces=" ">Help Requests and Bug Reports</nodenext><nodeprev spaces=" ">Libraries</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>netCDF2/3/4 and HDF4/5 Support</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="119">netCDF2</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="120">netCDF3</indexterm></cindex>
-<para>netCDF <w>version 2</w> was released in 1993.
-<acronym><acronymword>NCO</acronymword></acronym> (specifically <command>ncks</command>) began soon after this in 1994.
-<w>netCDF 3.0</w> was released in 1996, and we were not exactly eager to
-convert all code to the newer, less tested netCDF implementation.
-One <w>netCDF3</w> interface call (<code>nc_inq_libvers</code>) was added to
-<acronym><acronymword>NCO</acronymword></acronym> in January, 1998, to aid in maintainance and debugging.
-In March, 2001, the final <acronym><acronymword>NCO</acronymword></acronym> conversion to <w>netCDF3</w>
-was completed (coincidentally on the same day <w>netCDF 3.5</w> was
-released).
-<acronym><acronymword>NCO</acronymword></acronym> <w>versions 2.0</w> and higher are built with the
-<code>-DNO_NETCDF_2</code> flag to ensure no <w>netCDF2</w> interface calls
-are used.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="121"><code>NO_NETCDF_2</code></indexterm></cindex>
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="122"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="123">Hierarchical Data Format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="124">Mike Folk</indexterm></cindex>
-<para>However, the ability to compile <acronym><acronymword>NCO</acronymword></acronym> with only <w>netCDF2</w>
-calls is worth maintaining because <acronym><acronymword>HDF</acronymword></acronym> <w>version 4</w>,
-aka <acronym><acronymword>HDF4</acronymword></acronym> or simply <acronym><acronymword>HDF</acronymword></acronym>,
-<footnote><para>The Hierarchical Data Format, or <acronym><acronymword>HDF</acronymword></acronym>, is another
-self-describing data format similar to, but more elaborate than,
-netCDF.
-<acronym><acronymword>HDF</acronymword></acronym> comes in two flavors, <acronym><acronymword>HDF4</acronymword></acronym> and <acronym><acronymword>HDF5</acronymword></acronym>.
-Often people use the shorthand <acronym><acronymword>HDF</acronymword></acronym> to refer to the older
-format <acronym><acronymword>HDF4</acronymword></acronym>.
-People almost always use <acronym><acronymword>HDF5</acronymword></acronym> to refer to <acronym><acronymword>HDF5</acronymword></acronym>.</para></footnote>
-(available from <uref><urefurl>http://hdfgroup.org</urefurl><urefdesc spaces=" ">HDF</urefdesc></uref>)
-supports only the <w>netCDF2</w> library calls
-(see <uref><urefurl>http://hdfgroup.org/UG41r3_html/SDS_SD.fm12.html#47784</urefurl></uref>).
-There are two versions of <acronym><acronymword>HDF</acronymword></acronym>.
-Currently <acronym><acronymword>HDF</acronymword></acronym> <w>version 4.x</w> supports the full <w>netCDF2</w>
-<acronym><acronymword>API</acronymword></acronym> and thus <acronym><acronymword>NCO</acronymword></acronym> <w>version 1.2.x</w>.
-If <acronym><acronymword>NCO</acronymword></acronym> <w>version 1.2.x</w> (or earlier) is built with only
-<w>netCDF2</w> calls then all <acronym><acronymword>NCO</acronymword></acronym> operators should work with
-<acronym><acronymword>HDF4</acronymword></acronym> files as well as netCDF files
-<footnote><para>One must link the <acronym><acronymword>NCO</acronymword></acronym> code to the <acronym><acronymword>HDF4</acronymword></acronym>
-<acronym><acronymword>MFHDF</acronymword></acronym> library instead of the usual netCDF library.
-Apparently <samp>MF</samp> stands for Multi-file not for Mike Folk.
-In any case, until about 2007 the <acronym><acronymword>MFHDF</acronymword></acronym> library only supported
-<w>netCDF2</w> calls.
-Most people will never again install <acronym><acronymword>NCO</acronymword></acronym> 1.2.x and so will
-never use <acronym><acronymword>NCO</acronymword></acronym> to write <acronym><acronymword>HDF4</acronymword></acronym> files.
-It is simply too much trouble.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="125"><code>NETCDF2_ONLY</code></indexterm></cindex>
-The preprocessor token <code>NETCDF2_ONLY</code> exists
-in <acronym><acronymword>NCO</acronymword></acronym> <w>version 1.2.x</w> to eliminate all <w>netCDF3</w>
-calls.
-Only versions of <acronym><acronymword>NCO</acronymword></acronym> numbered 1.2.x and earlier have this
-capability.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="126">Unidata</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="127"><acronym><acronymword>NCSA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="128">netCDF4</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="129"><acronym><acronymword>HDF5</acronymword></acronym></indexterm></cindex>
-<para><acronym><acronymword>HDF</acronymword></acronym> <w>version 5</w> became available in 1999, but did not
-support netCDF (or, for that matter, Fortran) as of December 1999.
-By early 2001, <acronym><acronymword>HDF5</acronymword></acronym> did support Fortran90.
-Thanks to an <acronym><acronymword>NSF</acronymword></acronym>-funded &textldquo;harmonization&textrdquo; partnership,
-<acronym><acronymword>HDF</acronymword></acronym> began to fully support the <w>netCDF3</w> read interface
-(which is employed by <w><acronym><acronymword>NCO</acronymword></acronym> 2.x</w> and later).
-In 2004, Unidata and <acronym><acronymword>THG</acronymword></acronym> began a project to implement
-the <acronym><acronymword>HDF5</acronymword></acronym> features necessary to support the netCDF API.
-<acronym><acronymword>NCO</acronymword></acronym> version 3.0.3 added support for reading/writing
-netCDF4-formatted <acronym><acronymword>HDF5</acronymword></acronym> files in October, 2005.
-See <ref label="File-Formats-and-Conversion"><xrefnodename>File Formats and Conversion</xrefnodename></ref> for more details.
-</para>
-<para>HDF support for netCDF was completed with HDF5 version
-<w>version 1.8</w> in 2007.
-The netCDF front-end that uses this <acronym><acronymword>HDF5</acronymword></acronym> back-end
-was completed and released soon after as netCDF <w>version 4</w>.
-Download it from the
-<uref><urefurl>http://my.unidata.ucar.edu/content/software/netcdf/netcdf-4</urefurl><urefdesc>netCDF4</urefdesc></uref>
-website.
-</para>
-<html endspaces=" ">
-<a name="nco4"></a> <!&textndash; http://nco.sf.net/nco.html#nco4 &textndash;>
-</html>
-<para><acronym><acronymword>NCO</acronymword></acronym> version 3.9.0, released in May, 2007, added support for
-all netCDF4 atomic data types except <code>NC_STRING</code>.
-Support for <code>NC_STRING</code>, including ragged arrays of strings,
-was finally added in version 3.9.9, released in June, 2009.
-Support for additional netCDF4 features has been incremental.
-We add one netCDF4 feature at a time.
-You must build <acronym><acronymword>NCO</acronymword></acronym> with netCDF4 to obtain this support.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="130"><code>NC_UBYTE</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="131"><code>NC_USHORT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="132"><code>NC_UINT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="133"><code>NC_INT64</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="134"><code>NC_UINT64</code></indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> supports many netCDF4 features including atomic data
-types, Lempel-Ziv compression (deflation), chunking, and groups.
-The new atomic data types are <code>NC_UBYTE</code>, <code>NC_USHORT</code>,
-<code>NC_UINT</code>, <code>NC_INT64</code>, and <code>NC_UINT64</code>.
-Eight-byte integer support is an especially useful improvement from
-netCDF3.
-All <acronym><acronymword>NCO</acronymword></acronym> operators support these types, e.g., <command>ncks</command>
-copies and prints them, <command>ncra</command> averages them, and
-<command>ncap2</command> processes algebraic scripts with them.
-<command>ncks</command> prints compression information, if any, to screen.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="135">deflation</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> version 3.9.1 (June, 2007) added support for netCDF4
-Lempel-Ziv deflation.
-Lempel-Ziv deflation is a lossless compression technique.
-See <ref label="Deflation"><xrefnodename>Deflation</xrefnodename></ref> for more details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="136">chunking</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> version 3.9.9 (June, 2009) added support for netCDF4
-chunking in <command>ncks</command> and <command>ncecat</command>.
-<acronym><acronymword>NCO</acronymword></acronym> version 4.0.4 (September, 2010) completed support for
-netCDF4 chunking in the remaining operators.
-See <ref label="Chunking"><xrefnodename>Chunking</xrefnodename></ref> for more details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="137">groups</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> version 4.2.2 (October, 2012) added support for netCDF4
-groups in <command>ncks</command> and <command>ncecat</command>.
-Group support for these operators was complete (e.g., regular
-expressions to select groups and Group Path Editing) as of
-<acronym><acronymword>NCO</acronymword></acronym> version 4.2.6 (March, 2013).
-See <ref label="Group-Path-Editing"><xrefnodename>Group Path Editing</xrefnodename></ref> for more details.
-Group support for all other operators was finished in the
-<acronym><acronymword>NCO</acronymword></acronym> version 4.3.x series completed in December, 2013.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="138">broadcasting groups</indexterm></cindex>
-<para>Support for netCDF4 in the first arithmetic operator, <command>ncbo</command>,
-was introduced in <acronym><acronymword>NCO</acronymword></acronym> version 4.3.0 (March, 2013).
-<acronym><acronymword>NCO</acronymword></acronym> version 4.3.1 (May, 2013) completed this support and
-introduced the first example of automatic group broadcasting.
-See <ref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></ref> for more details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="139"><acronym><acronymword>HDF5</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="140"><code>-4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="141"><code>-3</code></indexterm></cindex>
-<para>netCDF4-enabled <acronym><acronymword>NCO</acronymword></acronym> handles netCDF3 files without change.
-In addition, it automagically handles netCDF4 (<acronym><acronymword>HDF5</acronymword></acronym>) files:
-If you feed <acronym><acronymword>NCO</acronymword></acronym> netCDF3 files, it produces netCDF3 output.
-If you feed <acronym><acronymword>NCO</acronymword></acronym> netCDF4 files, it produces netCDF4 output.
-Use the handy-dandy <samp>-4</samp> switch to request netCDF4 output from
-netCDF3 input, i.e., to convert netCDF3 to netCDF4.
-See <ref label="File-Formats-and-Conversion"><xrefnodename>File Formats and Conversion</xrefnodename></ref> for more details.
-</para>
-<html endspaces=" ">
-<a name="hdf4"></a> <!&textndash; http://nco.sf.net/nco.html#hdf4 &textndash;>
-<a name="HDF4"></a> <!&textndash; http://nco.sf.net/nco.html#HDF4 &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="142"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="143"><samp>--hdf4</samp></indexterm></cindex>
-<para>When linked to a netCDF library that was built with <acronym><acronymword>HDF4</acronymword></acronym>
-support
-<footnote><para>The procedure for doing this is documented at
-<uref><urefurl>http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html</urefurl></uref>.</para></footnote>,
-<acronym><acronymword>NCO</acronymword></acronym> automatically supports reading <acronym><acronymword>HDF4</acronymword></acronym>
-files and writing them as netCDF3/netCDF4/<acronym><acronymword>HDF5</acronymword></acronym> files.
-<acronym><acronymword>NCO</acronymword></acronym> can only write through the netCDF <acronym><acronymword>API</acronymword></acronym>, which
-can only write netCDF3/netCDF4/<acronym><acronymword>HDF5</acronymword></acronym> files.
-So <acronym><acronymword>NCO</acronymword></acronym> can <emph>read</emph> <acronym><acronymword>HDF4</acronymword></acronym> files, perform
-manipulations and calculations, and then it must <emph>write</emph> the
-results in netCDF format.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>HDF4</acronymword></acronym> has been quite functional since
-December, 2013.
-For best results install <acronym><acronymword>NCO</acronymword></acronym> versions 4.4.0 or later on top of
-netCDF versions 4.3.1 or later.
-Getting to this point has been an iterative effort where Unidata
-improved netCDF library capabilities in response to our requests.
-<acronym><acronymword>NCO</acronymword></acronym> versions 4.3.6 and earlier do not explicitly support
-<acronym><acronymword>HDF4</acronymword></acronym>, yet should work with <acronym><acronymword>HDF4</acronymword></acronym> if compiled with
-a version of netCDF (4.3.2 or later?) that does not unexpectedly die
-when probing <acronym><acronymword>HDF4</acronymword></acronym> files with standard netCDF calls.
-<acronym><acronymword>NCO</acronymword></acronym> versions 4.3.7&textndash;4.3.9 (October&textndash;December, 2013)
-use a special flag to workaround netCDF <acronym><acronymword>HDF4</acronymword></acronym> issues.
-The user must tell these versions of <acronym><acronymword>NCO</acronymword></acronym> that an input file is
-<acronym><acronymword>HDF4</acronymword></acronym> format by using the <samp>--hdf4</samp> switch.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="144"><code>HDF4_UNKNOWN</code></indexterm></cindex>
-<para>When compiled with netCDF version 4.3.1 (20140116) or later,
-<acronym><acronymword>NCO</acronymword></acronym> versions 4.4.0 (January, 2014) and later more gracefully
-handle <acronym><acronymword>HDF4</acronymword></acronym> files.
-In particular, the <samp>--hdf4</samp> switch is obsolete.
-Current versions of <acronym><acronymword>NCO</acronymword></acronym> use netCDF to determine automatically
-whether the underlying file is <acronym><acronymword>HDF4</acronymword></acronym>, and then take appropriate
-precautions to avoid netCDF4 <acronym><acronymword>API</acronymword></acronym> calls that fail when applied
-to <acronym><acronymword>HDF4</acronymword></acronym> files (e.g., <code>nc_inq_var_chunking()</code>,
-<code>nc_inq_var_deflate()</code>).
-When compiled with netCDF version 4.3.2 (20140423) or earlier,
-<acronym><acronymword>NCO</acronymword></acronym> will report that chunking and deflation properties of
-<acronym><acronymword>HDF4</acronymword></acronym> files as <code>HDF4_UNKNOWN</code>, because determining
-those properties was impossible.
-When compiled with netCDF version 4.3.3-rc2 (20140925) or later,
-<acronym><acronymword>NCO</acronymword></acronym> versions 4.4.6 (October, 2014) and later fully support
-chunking and deflation features of <acronym><acronymword>HDF4</acronymword></acronym> files.
-The <samp>--hdf4</samp> switch is supported (for backwards compatibility) yet
-redundant (i.e., does no harm) with current versions of <acronym><acronymword>NCO</acronymword></acronym>
-and netCDF.
-</para>
-<para>Converting <acronym><acronymword>HDF4</acronymword></acronym> files to netCDF:
-Since <acronym><acronymword>NCO</acronymword></acronym> reads <acronym><acronymword>HDF4</acronymword></acronym> files natively, it is now easy
-to convert <acronym><acronymword>HDF4</acronymword></acronym> files to netCDF files directly, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks --hdf4 fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.3.7-4.3.9)
-</pre></example>
-<para>The most efficient and accurate way to convert <acronym><acronymword>HDF4</acronymword></acronym> data to
-netCDF format is to convert to netCDF4 using <acronym><acronymword>NCO</acronymword></acronym> as above.
-Many <acronym><acronymword>HDF4</acronymword></acronym> producers (<acronym><acronymword>NASA</acronymword></acronym>!) love to use netCDF4
-types, e.g., unsigned bytes, so this procedure is the most typical.
-Conversion of <acronym><acronymword>HDF4</acronymword></acronym> to netCDF4 as above suffices when the data
-will only be processed by <acronym><acronymword>NCO</acronymword></acronym> and other netCDF4-aware tools.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="145"><command>ncl_convert2nc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="146"><command>nc3tonc4</command></indexterm></cindex>
-<para>However, many tools are not fully netCDF4-aware, and so conversion to
-netCDF3 may be desirable.
-Obtaining any netCDF file from an <acronym><acronymword>HDF4</acronymword></acronym> is easy:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -3 fl.hdf fl.nc # HDF4->netCDF3 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks -4 fl.hdf fl.nc # HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)
-ncks -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (NCO 4.4.0+, ...)
-ncks -7 -L 1 fl.hdf fl.nc # HDF4->netCDF4 classic (NCO 4.4.0+, ...)
-ncks --hdf4 -3 fl.hdf fl.nc # HDF4->netCDF3 (netCDF 4.3.0-)
-ncks --hdf4 -4 fl.hdf fl.nc # HDF4->netCDF4 (netCDF 4.3.0-)
-ncks --hdf4 -6 fl.hdf fl.nc # HDF4->netCDF3 64-bit (netCDF 4.3.0-)
-ncks --hdf4 -7 fl.hdf fl.nc # HDF4->netCDF4 classic (netCDF 4.3.0-)
-</pre></example>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), these commands work
-even when the <acronym><acronymword>HDF4</acronymword></acronym> file contains netCDF4 atomic types (e.g.,
-unsigned bytes, 64-bit integers) because <acronym><acronymword>NCO</acronymword></acronym> can autoconvert
-everything to atomic types supported by netCDF3
-<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), we recommended the
-<command>ncl_convert2nc</command> tool to convert <acronym><acronymword>HDF</acronymword></acronym> to netCDF3 when
-both these are true: <w>1. You</w> must have netCDF3 and <w>2. the</w>
-<acronym><acronymword>HDF</acronymword></acronym> file contains netCDF4 atomic types.
-More recent versions of <acronym><acronymword>NCO</acronymword></acronym> handle this problem fine, and
-include other advantages so we no longer recommend
-<command>ncl_convert2nc</command> because <command>ncks</command> is faster and more
-space-efficient.
-Both automatically convert netCDF4 types to netCDF3 types, yet
-<command>ncl_convert2nc</command> cannot produce full netCDF4 files.
-In contrast, <command>ncks</command> will happily convert <acronym><acronymword>HDF</acronymword></acronym> straight
-to netCDF4 files with netCDF4 types.
-Hence <command>ncks</command> can and does preserve the variable types.
-Unsigned bytes stay unsigned bytes.
-64-bit integers stay 64-bit integers.
-Strings stay strings.
-Hence, <command>ncks</command> conversions often result in smaller files than
-<command>ncl_convert2nc</command> conversions.
-A tool useful for converting netCDF3 to netCDF4 files is the Python
-script <command>nc3tonc4</command> by Jeff Whitaker.</para></footnote>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="147"><code>hdf_name</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="148">illegal names</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.4 (May, 2014) both
-<command>ncl_convert2nc</command> and <acronym><acronymword>NCO</acronymword></acronym> have built-in, automatic
-workarounds to handle element names that contain characters that are
-legal in <acronym><acronymword>HDF</acronymword></acronym> though are illegal in <acronym><acronymword>netCDF</acronymword></acronym>.
-For example, slashes and leading special characters are are legal in
-<acronym><acronymword>HDF</acronymword></acronym> and illegal in <acronym><acronymword>netCDF</acronymword></acronym> element (i.e., group,
-variable, dimension, and attribute) names.
-<acronym><acronymword>NCO</acronymword></acronym> converts these forbidden characters to underscores, and
-retains the original names of variables in automatically produced
-attributes named <code>hdf_name</code>
-<footnote><para>Two real-world examples: <acronym><acronymword>NCO</acronymword></acronym> translates the
-<acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>CERES</acronymword></acronym> dimension <code>(FOV) Footprints</code> to
-<code>_FOV_ Footprints</code>, and
-<code>Cloud & Aerosol, Cloud Only, Clear Sky w/Aerosol, and Clear Sky</code>
-(yes, the dimension name includes whitespace and special characters) to
-<code>Cloud & Aerosol, Cloud Only, Clear Sky w_Aerosol, and Clear Sky</code>
-<command>ncl_convert2nc</command> makes the element name netCDF-safe in a
-slightly different manner, and also stores the original name in the
-<code>hdf_name</code> attribute.</para></footnote>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="149"><acronym><acronymword>H4CF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="150"><command>h4tonccf</command></indexterm></cindex>
-<para>Finally, in February 2014, we learned that the <acronym><acronymword>HDF</acronymword></acronym> group
-has a project called <acronym><acronymword>H4CF</acronymword></acronym>
-(described <uref><urefurl>http://hdfeos.org/software/h4cflib.php</urefurl><urefdesc spaces=" ">here</urefdesc></uref>)
-whose goal is to make <acronym><acronymword>HDF4</acronymword></acronym> files accessible to <acronym><acronymword>CF</acronymword></acronym>
-tools and conventions.
-Their project includes a tool named <command>h4tonccf</command> that converts
-<acronym><acronymword>HDF4</acronymword></acronym> files to netCDF3 or netCDF4 files.
-We are not yet sure what advantages or features <command>h4tonccf</command> has
-that are not in <acronym><acronymword>NCO</acronymword></acronym>, though we suspect both methods have their
-own advantages. Corrections welcome.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="151"><acronym><acronymword>RPM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="152">Debian</indexterm></cindex>
-<para>As of 2012, netCDF4 is relatively stable software.
-Problems with netCDF4 and <acronym><acronymword>HDF</acronymword></acronym> libraries have mainly been fixed.
-Binary <acronym><acronymword>NCO</acronymword></acronym> distributions shipped as <acronym><acronymword>RPM</acronymword></acronym>s and as debs
-have used the netCDF4 library since 2010 and 2011, respectively.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="153"><code>NETCDF4_ROOT</code></indexterm></cindex>
-<para>One must often build <acronym><acronymword>NCO</acronymword></acronym> from source to obtain netCDF4
-support.
-Typically, one specifies the root of the netCDF4
-installation directory. Do this with the <code>NETCDF4_ROOT</code> variable.
-Then use your preferred <acronym><acronymword>NCO</acronymword></acronym> build mechanism, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">export NETCDF4_ROOT=/usr/local/netcdf4 # Set netCDF4 location
-cd ~/nco;./configure --enable-netcdf4 # Configure mechanism -or-
-cd ~/nco/bld;./make NETCDF4=Y allinone # Old Makefile mechanism
-</pre></example>
-
-<para>We carefully track the netCDF4 releases, and keep the netCDF4 atomic
-type support and other features working.
-Our long term goal is to utilize more of the extensive new netCDF4
-feature set. The next major netCDF4 feature we are likely to utilize
-is parallel I/O. We will enable this in the <acronym><acronymword>MPI</acronymword></acronym> netCDF
-operators.
-</para>
-<html endspaces=" ">
-<a name="help"></a> <!&textndash; http://nco.sf.net/nco.html#help &textndash;>
-<a name="hlp"></a> <!&textndash; http://nco.sf.net/nco.html#hlp &textndash;>
-<a name="bug"></a> <!&textndash; http://nco.sf.net/nco.html#bug &textndash;>
-</html>
-</section>
-<node name="Help-Requests-and-Bug-Reports" spaces=" "><nodename>Help Requests and Bug Reports</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">netCDF2/3/4 and HDF4/5 Support</nodeprev><nodeup spaces=" ">Introduction</nodeup></node>
-<section spaces=" "><sectiontitle>Help Requests and Bug Reports</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="154">reporting bugs</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="155">bugs, reporting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="156">core dump</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="157">help</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="158">features, requesting</indexterm></cindex>
-<para>We generally receive three categories of mail from users: help requests,
-bug reports, and feature requests.
-Notes saying the equivalent of &textldquo;Hey, <acronym><acronymword>NCO</acronymword></acronym> continues to work
-great and it saves me more time everyday than it took to write this
-note&textrdquo; are a distant fourth.
-</para>
-<para>There is a different protocol for each type of request.
-The preferred etiquette for all communications is via <acronym><acronymword>NCO</acronymword></acronym>
-Project Forums.
-Do not contact project members via personal e-mail unless your request
-comes with money or you have damaging information about our personal
-lives.
-<emph>Please use the Forums</emph>&textmdash;they preserve a record of the questions
-and answers so that others can learn from our exchange.
-Also, since <acronym><acronymword>NCO</acronymword></acronym> is government-funded, this record helps us
-provide program officers with information they need to evaluate our
-project.
-</para>
-<para>Before posting to the <acronym><acronymword>NCO</acronymword></acronym> forums described below, you might
-first <uref><urefurl>https://sf.net/account/register.php</urefurl><urefdesc spaces=" ">register</urefdesc></uref>
-your name and email address with SourceForge.net or else all of your
-postings will be attributed to <emph>nobody</emph>.
-Once registered you may choose to <emph>monitor</emph> any forum and to receive
-(or not) email when there are any postings including responses to your
-questions.
-We usually reply to the forum message, not to the original poster.
-</para>
-<para>If you want us to include a new feature in <acronym><acronymword>NCO</acronymword></acronym>, check first to
-see if that feature is already on the <uref><urefurl>file:./TODO</urefurl><urefdesc>TODO</urefdesc></uref> list.
-If it is, why not implement that feature yourself and send us the patch?
-If the feature is not yet on the list, then send a note to the
-<uref><urefurl>http://sf.net/p/nco/discussion/9829</urefurl><urefdesc spaces=" ">NCO Discussion forum</urefdesc></uref>.
-</para>
-<para>Read the manual before reporting a bug or posting a help request.
-Sending questions whose answers are not in the manual is the best
-way to motivate us to write more documentation.
-We would also like to accentuate the contrapositive of this statement.
-If you think you have found a real bug <emph>the most helpful thing you
-can do is simplify the problem to a manageable size and then report it</emph>.
-The first thing to do is to make sure you are running the latest
-publicly released version of <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<para>Once you have read the manual, if you are still unable to get
-<acronym><acronymword>NCO</acronymword></acronym> to perform a documented function, submit a help request.
-Follow the same procedure as described below for reporting bugs
-(after all, it might be a bug).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="159">debugging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="160"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="161"><code>-D</code></indexterm></cindex>
-That is, describe what you are trying to do, and include the complete
-commands (run with <samp>-D 5</samp>), error messages, and version of
-<acronym><acronymword>NCO</acronymword></acronym> (with <samp>-r</samp>).
-Post your help request to the
-<uref><urefurl>http://sf.net/p/nco/discussion/9830</urefurl><urefdesc spaces=" ">NCO Help forum</urefdesc></uref>.
-</para>
-<para>If you think you used the right command when <acronym><acronymword>NCO</acronymword></acronym> misbehaves,
-then you might have found a bug.
-Incorrect numerical answers are the highest priority.
-We usually fix those within one or two days.
-Core dumps and sementation violations receive lower priority.
-They are always fixed, eventually.
-</para>
-<para>How do you simplify a problem that reveal a bug?
-Cut out extraneous variables, dimensions, and metadata from the
-offending files and re-run the command until it no longer breaks.
-Then back up one step and report the problem.
-Usually the file(s) will be very small, i.e., one variable with one or
-two small dimensions ought to suffice.
-<html endspaces=" ">
-<a name="dbg"></a> <!&textndash; http://nco.sf.net/nco.html#dbg &textndash;>
-<a name="-D"></a> <!&textndash; http://nco.sf.net/nco.html#-D &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="162"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="163"><code>--revision</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="164"><code>--version</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="165"><code>--vrs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="166"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="167"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="168"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="169"><var>debug-level</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="170"><var>dbg_lvl</var></indexterm></cindex>
-Run the operator with <samp>-r</samp> and then run the command with
-<samp>-D 5</samp> to increase the verbosity of the debugging output.
-It is very important that your report contain the exact error messages
-and compile-time environment.
-Include a copy of your sample input file, or place one on a
-publically accessible location, of the file(s).
-Post the full bug report to the
-<uref><urefurl>http://sf.net/bugs/?group_id=3331</urefurl><urefdesc spaces=" ">NCO Project buglist</urefdesc></uref>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="171">installation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="172"><command>autoconf</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="173"><file>nco.configure.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="174"><file>nco.config.log.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="175"><file>nco.make.${GNU_TRP}.foo</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="176"><file>config.guess</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="177"><file>configure.eg</file></indexterm></cindex>
-<para>Build failures count as bugs.
-Our limited machine access means we cannot fix all build failures.
-The information we need to diagnose, and often fix, build failures
-are the three files output by <acronym><acronymword>GNU</acronymword></acronym> build tools,
-<file>nco.config.log.${GNU_TRP}.foo</file>,
-<file>nco.configure.${GNU_TRP}.foo</file>,
-and <file>nco.make.${GNU_TRP}.foo</file>.
-The file <file>configure.eg</file> shows how to produce these files.
-Here <code>${GNU_TRP}</code> is the &textldquo;<acronym><acronymword>GNU</acronymword></acronym> architecture triplet&textrdquo;,
-the <var>chip-vendor-OS</var> string returned by <file>config.guess</file>.
-Please send us your improvements to the examples supplied in
-<file>configure.eg</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="178">regressions archive</indexterm></cindex>
-The regressions archive at <url><urefurl>http://dust.ess.uci.edu/nco/rgr</urefurl></url>
-contains the build output from our standard test systems.
-You may find you can solve the build problem yourself by examining the
-differences between these files and your own.
-</para>
-<html endspaces=" ">
-<a name="str"></a> <!&textndash; http://nco.sf.net/nco.html#str &textndash;>
-</html>
-</section>
-</chapter>
-<node name="Strategies" spaces=" "><nodename>Strategies</nodename><nodenext spaces=" ">Shared features</nodenext><nodeprev spaces=" ">Introduction</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Operator Strategies</sectiontitle>
-
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Philosophy</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Climate Model Paradigm</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Temporary Output Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Appending Variables</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Simple Arithmetic and Interpolation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Statistics vs. Concatenation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Large Numbers of Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Large Datasets</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Memory Requirements</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Performance</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="phl"></a> <!&textndash; http://nco.sf.net/nco.html#phl &textndash;>
-</html>
-<node name="Philosophy" spaces=" "><nodename>Philosophy</nodename><nodenext spaces=" ">Climate Model Paradigm</nodenext><nodeprev spaces=" ">Strategies</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Philosophy</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="179">philosophy</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="180">climate model</indexterm></cindex>
-
-<para>The main design goal is command line operators which perform useful,
-scriptable operations on netCDF files.
-Many scientists work with models and observations which produce too much
-data to analyze in tabular format.
-Thus, it is often natural to reduce and massage this raw or primary
-level data into summary, or second level data, e.g., temporal or spatial
-averages.
-These second level data may become the inputs to graphical and
-statistical packages, and are often more suitable for archival and
-dissemination to the scientific community.
-<acronym><acronymword>NCO</acronymword></acronym> performs a suite of operations useful in manipulating data
-from the primary to the second level state.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="181"><acronym><acronymword>IDL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="182">Matlab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="183"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="184">Perl</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="185">Yorick</indexterm></cindex>
-Higher level interpretive languages (e.g., <acronym><acronymword>IDL</acronymword></acronym>, Yorick,
-Matlab, <acronym><acronymword>NCL</acronymword></acronym>, Perl, Python),
-and lower level compiled languages (e.g., C, Fortran) can always perform
-any task performed by <acronym><acronymword>NCO</acronymword></acronym>, but often with more overhead.
-NCO, on the other hand, is limited to a much smaller set of arithmetic
-and metadata operations than these full blown languages.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="186">command line switches</indexterm></cindex>
-<para>Another goal has been to implement enough command line switches so that
-frequently used sequences of these operators can be executed from a
-shell script or batch file.
-Finally, <acronym><acronymword>NCO</acronymword></acronym> was written to consume the absolute minimum
-amount of system memory required to perform a given job.
-The arithmetic operators are extremely efficient; their exact memory
-usage is detailed in <ref label="Memory-Requirements"><xrefnodename>Memory Requirements</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="clm"></a> <!&textndash; http://nco.sf.net/nco.html#clm &textndash;>
-</html>
-</section>
-<node name="Climate-Model-Paradigm" spaces=" "><nodename>Climate Model Paradigm</nodename><nodenext spaces=" ">Temporary Output Files</nodenext><nodeprev spaces=" ">Philosophy</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Climate Model Paradigm</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="187">climate model</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="188"><acronym><acronymword>NCAR</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="189"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
-
-<para><acronym><acronymword>NCO</acronymword></acronym> was developed at <acronym><acronymword>NCAR</acronymword></acronym> to aid analysis and
-manipulation of datasets produced by General Circulation Models
-(<acronym><acronymword>GCM</acronymword></acronym>s).
-<acronym><acronymword>GCM</acronymword></acronym> datasets share many features with other gridded scientific
-datasets and so provide a useful paradigm for the explication of the
-<acronym><acronymword>NCO</acronymword></acronym> operator set.
-Examples in this manual use a <acronym><acronymword>GCM</acronymword></acronym> paradigm because latitude,
-longitude, time, temperature and other fields related to our natural
-environment are as easy to visualize for the layman as the expert.
-</para>
-<html endspaces=" ">
-<a name="out"></a> <!&textndash; http://nco.sf.net/nco.html#out &textndash;>
-</html>
-</section>
-<node name="Temporary-Output-Files" spaces=" "><nodename>Temporary Output Files</nodename><nodenext spaces=" ">Appending Variables</nodenext><nodeprev spaces=" ">Climate Model Paradigm</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Temporary Output Files </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="190">data safety</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="191">error tolerance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="192">safeguards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="193">temporary output files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="194">temporary files</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> operators are designed to be reasonably fault tolerant, so
-that a system failure or user-abort of the operation (e.g., with
-<kbd>C-c</kbd>) does not cause loss of data.
-The user-specified <var>output-file</var> is only created upon successful
-completion of the operation
-<footnote><para>The <command>ncrename</command> and <command>ncatted</command> operators are
-exceptions to this rule.
-<xref label="ncrename-netCDF-Renamer"><xrefnodename>ncrename netCDF Renamer</xrefnodename></xref>.</para></footnote>.
-This is accomplished by performing all operations in a temporary copy
-of <var>output-file</var>.
-The name of the temporary output file is constructed by appending
-<code>.pid<var><process ID></var>.<var><operator name></var>.tmp</code> to the
-user-specified <var>output-file</var> name.
-When the operator completes its task with no fatal errors, the temporary
-output file is moved to the user-specified <var>output-file</var>.
-This imbues the process with fault-tolerance since fatal error
-(e.g., disk space fills up) affect only the temporary output file,
-leaving the final output file not created if it did not already exist.
-Note the construction of a temporary output file uses more disk space
-than just overwriting existing files &textldquo;in place&textrdquo; (because there may be
-two copies of the same file on disk until the <acronym><acronymword>NCO</acronymword></acronym> operation
-successfully concludes and the temporary output file overwrites the
-existing <var>output-file</var>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="195">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="196">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="197">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="198">execution time</indexterm></cindex>
-Also, note this feature increases the execution time of the operator
-by approximately the time it takes to copy the <var>output-file</var>
-<footnote><para>The OS-specific system move command is used.
-This is <command>mv</command> for <acronym><acronymword>UNIX</acronymword></acronym>, and <command>move</command> for Windows.</para></footnote>.
-Finally, note this fault-tolerant feature allows the <var>output-file</var>
-to be the same as the <var>input-file</var> without any danger of
-&textldquo;overlap&textrdquo;.
-</para>
-<html endspaces=" ">
-<a name="tmp_fl"></a> <!&textndash; http://nco.sf.net/nco.html#tmp_fl &textndash;>
-<a name="no_tmp_fl"></a> <!&textndash; http://nco.sf.net/nco.html#no_tmp_fl &textndash;>
-<a name="wrt_tmp_fl"></a> <!&textndash; http://nco.sf.net/nco.html#wrt_tmp_fl &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="199"><code>--no_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="200"><code>--wrt_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="201"><code>--write_tmp_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="202"><code>--create_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="203"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="204"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="205"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
-<para>Over time many &textldquo;power users&textrdquo; have requested a way to turn-off the
-fault-tolerance safety feature of automatically creating a temporary
-file.
-Often these users build and execute production data analysis scripts
-that are repeated frequently on large datasets.
-Obviating an extra file write can then conserve significant disk space
-and time.
-For this purpose <acronym><acronymword>NCO</acronymword></acronym> has, since version 4.2.1 in August, 2012,
-made configurable the controls over temporary file creation.
-The <samp>--wrt_tmp_fl</samp> and equivalent <samp>--write_tmp_fl</samp> switches
-ensure <acronym><acronymword>NCO</acronymword></acronym> writes output to an intermediate temporary file.
-This is and has always been the default behavior so there is currently
-no need to specify these switches.
-However, the default may change some day, especially since writing to
-RAM disks (<pxref label="RAM-disks"><xrefnodename>RAM disks</xrefnodename></pxref>) may some day become the default.
-The <samp>--no_tmp_fl</samp> switch causes <acronym><acronymword>NCO</acronymword></acronym> to write directly to
-the final output file instead of to an intermediate temporary file.
-&textldquo;Power users&textrdquo; may wish to invoke this switch to increase performance
-(i.e., reduce wallclock time) when manipulating large files.
-When eschewing temporary files, users may forsake the ability to have
-the same name for both <var>output-file</var> and <var>input-file</var> since, as
-described above, the temporary file prevented overlap issues.
-However, if the user creates the output file in <acronym><acronymword>RAM</acronymword></acronym> (<pxref label="RAM-disks"><xrefnodename>RAM disks</xrefnodename></pxref>)
-then it is still possible to have the same name for both
-<var>output-file</var> and <var>input-file</var>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks in.nc out.nc # Default: create out.pid.tmp.nc then move to out.nc
-ncks --wrt_tmp_fl in.nc out.nc # Same as default
-ncks --no_tmp_fl in.nc out.nc # Create out.nc directly on disk
-ncks --no_tmp_fl in.nc in.nc # ERROR-prone! Overwrite in.nc with itself
-ncks --create_ram --no_tmp_fl in.nc in.nc # Create in RAM, write to disk
-ncks --open_ram --no_tmp_fl in.nc in.nc # Read into RAM, write to disk
-</pre></example>
-<noindent></noindent>
-<para>There is no reason to expect the fourth example to work.
-The behavior of overwriting a file while reading from the same file is
-undefined, much as is the shell command <samp>cat foo > foo</samp>.
-Although it may &textldquo;work&textrdquo; in some cases, it is unreliable.
-One way around this is to use <samp>--create_ram</samp> so that the
-output file is not written to disk until the input file is closed,
-<xref label="RAM-disks"><xrefnodename>RAM disks</xrefnodename></xref>.
-However, as of 20130328, the behavior of the <samp>--create_ram</samp> and
-<samp>--open_ram</samp> examples has not been thoroughly tested.
-</para>
-<para>The <acronym><acronymword>NCO</acronymword></acronym> authors have seen compelling use cases for utilizing
-the <acronym><acronymword>RAM</acronymword></acronym> switches, though not (yet) for combining them with
-<samp>--no_tmp_fl</samp>.
-<acronym><acronymword>NCO</acronymword></acronym> implements both options because they are largely
-independent of eachother.
-It is up to &textldquo;power users&textrdquo; to discover which best fit their needs.
-We welcome accounts of your experiences posted to the forums.
-</para>
-<html endspaces=" ">
-<a name="-A"></a> <!&textndash; http://nco.sf.net/nco.html#-A &textndash;>
-<a name="-O"></a> <!&textndash; http://nco.sf.net/nco.html#-O &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="206"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="207"><code>-O</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="208"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="209"><code>--append</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="210"><code>--ovr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="211"><code>--overwrite</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="212">overwriting files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="213">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="214">appending to files</indexterm></cindex>
-<para>Other safeguards exist to protect the user from inadvertently
-overwriting data.
-If the <var>output-file</var> specified for a command is a pre-existing file,
-then the operator will prompt the user whether to overwrite (erase) the
-existing <var>output-file</var>, attempt to append to it, or abort the
-operation.
-However, in processing large amounts of data, too many interactive
-questions slows productivity.
-Therefore <acronym><acronymword>NCO</acronymword></acronym> also implements two ways to override its own
-safety features, the <samp>-O</samp> and <samp>-A</samp> switches.
-Specifying <samp>-O</samp> tells the operator to overwrite any existing
-<var>output-file</var> without prompting the user interactively.
-Specifying <samp>-A</samp> tells the operator to attempt to append to any
-existing <var>output-file</var> without prompting the user interactively.
-These switches are useful in batch environments because they suppress
-interactive keyboard input.
-</para>
-<html endspaces=" ">
-<a name="apn"></a> <!&textndash; http://nco.sf.net/nco.html#apn &textndash;>
-<a name="append"></a> <!&textndash; http://nco.sf.net/nco.html#append &textndash;>
-</html>
-</section>
-<node name="Appending-Variables" spaces=" "><nodename>Appending Variables</nodename><nodenext spaces=" ">Simple Arithmetic and Interpolation</nodenext><nodeprev spaces=" ">Temporary Output Files</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Appending Variables</sectiontitle>
-<para>Adding variables from one file to another is often desirable.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="215">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="216">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="217">merging files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="218">pasting variables</indexterm></cindex>
-This is referred to as <dfn>appending</dfn>, although some prefer the
-terminology <dfn>merging</dfn> <footnote><para>The terminology <dfn>merging</dfn> is
-reserved for an (unwritten) operator which replaces hyperslabs of a
-variable in one file with hyperslabs of the same variable from another
-file</para></footnote> or <dfn>pasting</dfn>.
-Appending is often confused with what <acronym><acronymword>NCO</acronymword></acronym> calls
-<dfn>concatenation</dfn>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="219">record dimension</indexterm></cindex>
-In <acronym><acronymword>NCO</acronymword></acronym>, concatenation refers to splicing a variable
-along the record dimension.
-The length along the record dimension of the output is the sum of the
-lengths of the input files.
-Appending, on the other hand, refers to copying a variable from one file
-to another file which may or may not already contain the variable
-<footnote><para>Yes, the terminology is confusing.
-By all means mail me if you think of a better nomenclature.
-Should <acronym><acronymword>NCO</acronymword></acronym> use <dfn>paste</dfn> instead of <dfn>append</dfn>?
-</para></footnote>.
-<acronym><acronymword>NCO</acronymword></acronym> can append or concatenate just one variable, or all the
-variables in a file at the same time.
-</para>
-<para>In this sense, <command>ncks</command> can append variables from one file to
-another file.
-This capability is invoked by naming two files on the command line,
-<var>input-file</var> and <var>output-file</var>.
-When <var>output-file</var> already exists, the user is prompted whether to
-<dfn>overwrite</dfn>, <dfn>append/replace</dfn>, or <dfn>exit</dfn> from the command.
-Selecting <dfn>overwrite</dfn> tells the operator to erase the existing
-<var>output-file</var> and replace it with the results of the operation.
-Selecting <dfn>exit</dfn> causes the operator to exit&textmdash;the <var>output-file</var>
-will not be touched in this case.
-Selecting <dfn>append/replace</dfn> causes the operator to attempt to place
-the results of the operation in the existing <var>output-file</var>,
-<xref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></xref>.
-</para>
-<html endspaces=" ">
-<a name="unn"></a> <!&textndash; http://nco.sf.net/nco.html#unn &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="220">union of files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="221">disjoint files</indexterm></cindex>
-<para>The simplest way to create the union of two files is
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -A fl_1.nc fl_2.nc
-</pre></example>
-<para>This puts the contents of <file>fl_1.nc</file> into <file>fl_2.nc</file>.
-The <samp>-A</samp> is optional.
-On output, <file>fl_2.nc</file> is the union of the input files,
-regardless of whether they share dimensions and variables,
-or are completely disjoint.
-The append fails if the input files have differently named record
-dimensions (since netCDF supports only one), or have dimensions of the
-same name but different sizes.
-</para>
-<html endspaces=" ">
-<a name="bnr"></a> <!&textndash; http://nco.sf.net/nco.html#bnr &textndash;>
-</html>
-</section>
-<node name="Simple-Arithmetic-and-Interpolation" spaces=" "><nodename>Simple Arithmetic and Interpolation</nodename><nodenext spaces=" ">Statistics vs. Concatenation</nodenext><nodeprev spaces=" ">Appending Variables</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Simple Arithmetic and Interpolation</sectiontitle>
-
-<para>Users comfortable with <acronym><acronymword>NCO</acronymword></acronym> semantics may find it easier to
-perform some simple mathematical operations in <acronym><acronymword>NCO</acronymword></acronym> rather than
-higher level languages.
-<command>ncbo</command> (<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>) does file
-addition, subtraction, multiplication, division, and broadcasting.
-It even does group broadcasting.
-<command>ncflint</command> (<pxref label="ncflint-netCDF-File-Interpolator"><xrefnodename>ncflint netCDF File Interpolator</xrefnodename></pxref>) does
-file addition, subtraction, multiplication and interpolation.
-Sequences of these commands can accomplish simple yet powerful
-operations from the command line.
-</para>
-<html endspaces=" ">
-<a name="statisticians"></a> <!&textndash; http://nco.sf.net/nco.html#statisticians &textndash;>
-<a name="averagers"></a> <!&textndash; http://nco.sf.net/nco.html#averagers &textndash;>
-</html>
-</section>
-<node name="Statistics-vs_002e-Concatenation" spaces=" "><nodename>Statistics vs. Concatenation</nodename><nodenext spaces=" ">Large Numbers of Files</nodenext><nodeprev spaces=" ">Simple Arithmetic and Interpolation</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Statistics vs.&noeos; Concatenation</sectiontitle>
-
-<html endspaces=" ">
-<a name="sym_ncea"></a> <!&textndash; http://nco.sf.net/nco.html#sym_ncea &textndash;>
-<a name="sym_nces"></a> <!&textndash; http://nco.sf.net/nco.html#sym_nces &textndash;>
-<a name="sym_ncrcat"></a> <!&textndash; http://nco.sf.net/nco.html#sym_ncrcat &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="222">symbolic links</indexterm></cindex>
-<para>The most frequently used operators of <acronym><acronymword>NCO</acronymword></acronym> are probably the
-<dfn>statisticians</dfn> (i.e., tools that do statistics) and concatenators.
-Because there are so many types of statistics like averaging (e.g.,
-across files, within a file, over the record dimension, over other
-dimensions, with or without weights and masks) and of concatenating
-(across files, along the record dimension, along other dimensions),
-there are currently no fewer than five operators which tackle these two
-purposes: <command>ncra</command>, <command>nces</command>, <command>ncwa</command>,
-<command>ncrcat</command>, and <command>ncecat</command>.
-These operators do share many capabilities <footnote><para>Currently
-<command>nces</command> and <command>ncrcat</command> are symbolically linked to the
-<command>ncra</command> executable, which behaves slightly differently based on
-its invocation name (i.e., <samp>argv[0]</samp>).
-These three operators share the same source code, and merely have
-different inner loops.</para></footnote>, though each has its unique specialty.
-Two of these operators, <command>ncrcat</command> and <command>ncecat</command>,
-concatenate hyperslabs across files.
-The other two operators, <command>ncra</command> and <command>nces</command>, compute
-statistics across (and/or within) files
-<footnote><para>The third averaging operator, <command>ncwa</command>, is the most
-sophisticated averager in <acronym><acronymword>NCO</acronymword></acronym>.
-However, <command>ncwa</command> is in a different class than <command>ncra</command> and
-<command>nces</command> because it operates on a single file per invocation (as
-opposed to multiple files).
-On that single file, however, <command>ncwa</command> provides a richer set of
-averaging options&textmdash;including weighting, masking, and broadcasting.</para></footnote>.
-First, let&textrsquo;s describe the concatenators, then the statistics tools.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Concatenation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Averaging</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Interpolating</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="cnc"></a> <!&textndash; http://nco.sf.net/nco.html#cnc &textndash;>
-</html>
-<node name="Concatenation" spaces=" "><nodename>Concatenation</nodename><nodenext spaces=" ">Averaging</nodenext><nodeprev spaces=" ">Statistics vs. Concatenation</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
-<subsection spaces=" "><sectiontitle>Concatenators <command>ncrcat</command> and <command>ncecat</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="223"><command>ncecat</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="224"><command>ncrcat</command></indexterm></cindex>
-
-<para>Joining together independent files along a common record dimension is
-called <dfn>concatenation</dfn>.
-<command>ncrcat</command> is designed for concatenating record variables, while
-<command>ncecat</command> is designed for concatenating fixed length variables.
-Consider five files, <file>85.nc</file>, <file>86.nc</file>,
-<w>&dots; <file>89.nc</file></w> each containing a year&textrsquo;s worth of data.
-Say you wish to create from them a single file, <file>8589.nc</file>
-containing all the data, i.e., spanning all five years.
-If the annual files make use of the same record variable, then
-<command>ncrcat</command> will do the job nicely with, e.g.,
-<code>ncrcat 8?.nc 8589.nc</code>.
-The number of records in the input files is arbitrary and can vary from
-file to file.
-<xref label="ncrcat-netCDF-Record-Concatenator"><xrefnodename>ncrcat netCDF Record Concatenator</xrefnodename></xref>, for a complete description of
-<command>ncrcat</command>.
-</para>
-<para>However, suppose the annual files have no record variable, and thus
-their data are all fixed length.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="225">ensemble</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="226">climate model</indexterm></cindex>
-For example, the files may not be conceptually sequential, but rather
-members of the same group, or <dfn>ensemble</dfn>.
-Members of an ensemble may have no reason to contain a record dimension.
-<command>ncecat</command> will create a new record dimension (named <var>record</var>
-by default) with which to glue together the individual files into the
-single ensemble file.
-If <command>ncecat</command> is used on files which contain an existing record
-dimension, that record dimension is converted to a fixed-length
-dimension of the same name and a new record dimension (named
-<code>record</code>) is created.
-Consider five realizations, <file>85a.nc</file>, <file>85b.nc</file>,
-<w>&dots; <file>85e.nc</file></w> of 1985 predictions from the same climate
-model.
-Then <code>ncecat 85?.nc 85_ens.nc</code> glues together the individual
-realizations into the single file, <file>85_ens.nc</file>.
-If an input variable was dimensioned [<code>lat</code>,<code>lon</code>], it will
-have dimensions [<code>record</code>,<code>lat</code>,<code>lon</code>] in the output file.
-<w>A restriction</w> of <command>ncecat</command> is that the hyperslabs of the
-processed variables must be the same from file to file.
-Normally this means all the input files are the same size, and contain
-data on different realizations of the same variables.
-<xref label="ncecat-netCDF-Ensemble-Concatenator"><xrefnodename>ncecat netCDF Ensemble Concatenator</xrefnodename></xref>, for a complete description
-of <command>ncecat</command>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="227"><command>ncpdq</command></indexterm></cindex>
-<html endspaces=" ">
-<a name="dmn_cat"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_cat &textndash;>
-</html>
-<para><command>ncpdq</command> makes it possible to concatenate files along any
-dimension, not just the record dimension.
-First, use <command>ncpdq</command> to convert the dimension to be concatenated
-(i.e., extended with data from other files) into the record dimension.
-Second, use <command>ncrcat</command> to concatenate these files.
-Finally, if desirable, use <command>ncpdq</command> to revert to the original
-dimensionality.
-As a concrete example, say that files <file>x_01.nc</file>, <file>x_02.nc</file>,
-<w>&dots; <file>x_10.nc</file></w> contain time-evolving datasets from spatially
-adjacent regions.
-The time and spatial coordinates are <code>time</code> and <code>x</code>, respectively.
-Initially the record dimension is <code>time</code>.
-Our goal is to create a single file that contains joins all the
-spatially adjacent regions into one single time-evolving dataset.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for idx in 01 02 03 04 05 06 07 08 09 10; do # Bourne Shell
- ncpdq -a x,time x_${idx}.nc foo_${idx}.nc # Make x record dimension
-done
-ncrcat foo_??.nc out.nc # Concatenate along x
-ncpdq -a time,x out.nc out.nc # Revert to time as record dimension
-</verbatim>
-</example>
-
-<para>Note that <command>ncrcat</command> will not concatenate fixed-length variables,
-whereas <command>ncecat</command> concatenates both fixed-length and record
-variables along a new record variable.
-To conserve system memory, use <command>ncrcat</command> where possible.
-</para>
-<html endspaces=" ">
-<a name="avg"></a> <!&textndash; http://nco.sf.net/nco.html#avg &textndash;>
-</html>
-</subsection>
-<node name="Averaging" spaces=" "><nodename>Averaging</nodename><nodenext spaces=" ">Interpolating</nodenext><nodeprev spaces=" ">Concatenation</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
-<subsection spaces=" "><sectiontitle>Averagers <command>nces</command>, <command>ncra</command>, and <command>ncwa</command> </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="228"><command>nces</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="229"><command>ncra</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="230"><command>ncwa</command></indexterm></cindex>
-
-<para>The differences between the averagers <command>ncra</command> and <command>nces</command>
-are analogous to the differences between the concatenators.
-<command>ncra</command> is designed for averaging record variables from at least
-one file, while <command>nces</command> is designed for averaging fixed length
-variables from multiple files.
-<command>ncra</command> performs a simple arithmetic average over the record
-dimension of all the input files, with each record having an equal
-weight in the average.
-<command>nces</command> performs a simple arithmetic average of all the input
-files, with each file having an equal weight in the average.
-Note that <command>ncra</command> cannot average fixed-length variables,
-but <command>nces</command> can average both fixed-length and record variables.
-To conserve system memory, use <command>ncra</command> rather than
-<command>nces</command> where possible (e.g., if each <var>input-file</var> is one
-record long).
-The file output from <command>nces</command> will have the same dimensions
-(meaning dimension names as well as sizes) as the input hyperslabs
-(<pxref label="nces-netCDF-Ensemble-Statistics"><xrefnodename>nces netCDF Ensemble Statistics</xrefnodename></pxref>, for a complete description of
-<command>nces</command>).
-The file output from <command>ncra</command> will have the same dimensions as
-the input hyperslabs except for the record dimension, which will have a
-size <w>of 1</w> (<pxref label="ncra-netCDF-Record-Averager"><xrefnodename>ncra netCDF Record Averager</xrefnodename></pxref>, for a complete
-description of <command>ncra</command>).
-</para>
-<html endspaces=" ">
-<a name="ntp"></a> <!&textndash; http://nco.sf.net/nco.html#ntp &textndash;>
-</html>
-</subsection>
-<node name="Interpolating" spaces=" "><nodename>Interpolating</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Averaging</nodeprev><nodeup spaces=" ">Statistics vs. Concatenation</nodeup></node>
-<subsection spaces=" "><sectiontitle>Interpolator <command>ncflint</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="231"><command>ncflint</command></indexterm></cindex>
-
-<para><command>ncflint</command> can interpolate data between or two files.
-Since no other operators have this ability, the description of
-interpolation is given fully on the <command>ncflint</command> reference page
-(<pxref label="ncflint-netCDF-File-Interpolator"><xrefnodename>ncflint netCDF File Interpolator</xrefnodename></pxref>).
-Note that this capability also allows <command>ncflint</command> to linearly
-rescale any data in a netCDF file, e.g., to convert between differing
-units.
-</para>
-<html endspaces=" ">
-<a name="lrg"></a> <!&textndash; http://nco.sf.net/nco.html#lrg &textndash;>
-</html>
-</subsection>
-</section>
-<node name="Large-Numbers-of-Files" spaces=" "><nodename>Large Numbers of Files</nodename><nodenext spaces=" ">Large Datasets</nodenext><nodeprev spaces=" ">Statistics vs. Concatenation</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Large Numbers of Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="232">files, numerous input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="233"><code>-n <var>loop</var></code></indexterm></cindex>
-
-<para>Occasionally one desires to digest (i.e., concatenate or average)
-hundreds or thousands of input files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="234">automagic</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="235"><acronym><acronymword>NASA EOSDIS</acronymword></acronym></indexterm></cindex>
-Unfortunately, data archives (e.g., <acronym><acronymword>NASA EOSDIS</acronymword></acronym>) may not
-name netCDF files in a format understood by the <samp>-n <var>loop</var></samp>
-switch (<pxref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></pxref>) that automagically generates
-arbitrary numbers of input filenames.
-The <samp>-n <var>loop</var></samp> switch has the virtue of being concise,
-and of minimizing the command line.
-This helps keeps output file small since the command line is stored
-as metadata in the <code>history</code> attribute
-(<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>).
-However, the <samp>-n <var>loop</var></samp> switch is useless when there is no
-simple, arithmetic pattern to the input filenames (e.g.,
-<file>h00001.nc</file>, <file>h00002.nc</file>, <w>&dots; <file>h90210.nc</file></w>).
-Moreover, filename globbing does not work when the input files are too
-numerous or their names are too lengthy (when strung together as a
-single argument) to be passed by the calling shell to the <acronym><acronymword>NCO</acronymword></acronym>
-operator
-<footnote><para>The exact length which exceeds the operating system internal
-limit for command line lengths varies from <acronym><acronymword>OS</acronymword></acronym> to <acronym><acronymword>OS</acronymword></acronym>
-and from shell to shell.
-<acronym><acronymword>GNU</acronymword></acronym> <code>bash</code> may not have any arbitrary fixed limits to the
-size of command line arguments.
-Many <acronym><acronymword>OS</acronymword></acronym>s cannot handle command line arguments (including
-results of file globbing) exceeding 4096 characters.</para></footnote>.
-When this occurs, the <acronym><acronymword>ANSI</acronymword></acronym> C-standard <code>argc</code>-<code>argv</code>
-method of passing arguments from the calling shell to a C-program (i.e.,
-an <acronym><acronymword>NCO</acronymword></acronym> operator) breaks down.
-There are (at least) three alternative methods of specifying the input
-filenames to <acronym><acronymword>NCO</acronymword></acronym> in environment-limited situations.
-</para>
-<html endspaces=" ">
-<a name="stdin"></a> <!&textndash; http://nco.sf.net/nco.html#stdin &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="236">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="237"><code>stdin</code></indexterm></cindex>
-<para>The recommended method for sending very large numbers (hundreds or
-more, typically) of input filenames to the multi-file operators is
-to pass the filenames with the <acronym><acronymword>UNIX</acronymword></acronym> <dfn>standard input</dfn>
-feature, aka <code>stdin</code>:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Pipe large numbers of filenames to stdin
-/bin/ls | grep ${CASEID}_'......'.nc | ncecat -o foo.nc
-</verbatim>
-</example>
-<para>This method avoids all constraints on command line size imposed by
-the operating system.
-A drawback to this method is that the <code>history</code> attribute
-(<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>) does not record the name of any input
-files since the names were not passed on the command line.
-This makes determining the data provenance at a later date difficult.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="238"><code>nco_input_file_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="239"><code>nco_input_file_list</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="240">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="241">attributes, global</indexterm></cindex>
-To remedy this situation, multi-file operators store the number of
-input files in the <code>nco_input_file_number</code> global attribute and the
-input file list itself in the <code>nco_input_file_list</code> global attribute
-(<pxref label="File-List-Attributes"><xrefnodename>File List Attributes</xrefnodename></pxref>).
-Although this does not preserve the exact command used to generate the
-file, it does retains all the information required to reconstruct the
-command and determine the data provenance.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="242">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="243">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="244">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="245">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="246">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="247"><command>xargs</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="248"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<para>A second option is to use the <acronym><acronymword>UNIX</acronymword></acronym> <command>xargs</command> command.
-This simple example selects as input to <command>xargs</command> all the
-filenames in the current directory that match a given pattern.
-For illustration, consider a user trying to average millions of
-files which each have a six character filename.
-If the shell buffer cannot hold the results of the corresponding
-globbing operator, <file>??????.nc</file>, then the filename globbing
-technique will fail.
-Instead we express the filename pattern as an extended regular
-expression, <file>......\.nc</file> (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>).
-We use <command>grep</command> to filter the directory listing for this pattern
-and to pipe the results to <command>xargs</command> which, in turn, passes the
-matching filenames to an <acronym><acronymword>NCO</acronymword></acronym> multi-file operator, e.g.,
-<command>ncecat</command>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Use xargs to transfer filenames on the command line
-/bin/ls | grep ${CASEID}_'......'.nc | xargs -x ncecat -o foo.nc
-</verbatim>
-</example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="249">pipes</indexterm></cindex>
-<para>The single quotes protect the only sensitive parts of the extended
-regular expression (the <command>grep</command> argument), and allow shell
-interpolation (the <code>${CASEID}</code> variable substitution) to
-proceed unhindered on the rest of the command.
-<command>xargs</command> uses the <acronym><acronymword>UNIX</acronymword></acronym> pipe feature to append the
-suitably filtered input file list to the end of the <command>ncecat</command>
-command options.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="250">output file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="251">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="252"><code>-o <var>fl_out</var></code></indexterm></cindex>
-The <code>-o foo.nc</code> switch ensures that the input files supplied by
-<command>xargs</command> are not confused with the output file name.
-<command>xargs</command> does, unfortunately, have its own limit (usually about
-20,000 characters) on the size of command lines it can pass.
-Give <command>xargs</command> the <samp>-x</samp> switch to ensure it dies if it
-reaches this internal limit.
-When this occurs, use either the <code>stdin</code> method above, or the
-symbolic link presented next.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="253">symbolic links</indexterm></cindex>
-<para>Even when its internal limits have not been reached, the
-<command>xargs</command> technique may not be sophisticated enough to handle
-all situations.
-A full scripting language like Perl can handle any level of complexity
-of filtering input filenames, and any number of filenames.
-The technique of last resort is to write a script that creates symbolic
-links between the irregular input filenames and a set of regular,
-arithmetic filenames that the <samp>-n <var>loop</var></samp> switch understands.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="254">Perl</indexterm></cindex>
-For example, the following Perl script creates a monotonically
-enumerated symbolic link to up to one million <file>.nc</file> files in a
-directory. If there are 999,999 netCDF files present, the links are
-named <file>000001.nc</file> to <file>999999.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="255"><code>-n <var>loop</var></code></indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Create enumerated symbolic links
-/bin/ls | grep \.nc | perl -e \
-'$idx=1;while(<STDIN>){chop;symlink $_,sprintf("%06d.nc",$idx++);}'
-ncecat -n 999999,6,1 000001.nc foo.nc
-# Remove symbolic links when finished
-/bin/rm ??????.nc
-</verbatim>
-</example>
-<para>The <samp>-n <var>loop</var></samp> option tells the <acronym><acronymword>NCO</acronymword></acronym> operator to
-automatically generate the filnames of the symbolic links.
-This circumvents any <acronym><acronymword>OS</acronymword></acronym> and shell limits on command line size.
-The symbolic links are easily removed once <acronym><acronymword>NCO</acronymword></acronym> is finished.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="256"><code>history</code></indexterm></cindex>
-One drawback to this method is that the <code>history</code> attribute
-(<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>) retains the filename list of the symbolic
-links, rather than the data files themselves.
-This makes it difficult to determine the data provenance at a later
-date.
-</para>
-</section>
-<node name="Large-Datasets" spaces=" "><nodename>Large Datasets</nodename><nodenext spaces=" ">Memory Requirements</nodenext><nodeprev spaces=" ">Large Numbers of Files</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Large Datasets</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="257">large datasets</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="258"><acronym><acronymword>LFS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="259">Large File Support</indexterm></cindex>
-
-<para><dfn>Large datasets</dfn> are those files that are comparable in size to the
-amount of random access memory (<acronym><acronymword>RAM</acronymword></acronym>) in your computer.
-Many users of <acronym><acronymword>NCO</acronymword></acronym> work with files larger than <w>100 MB</w>.
-Files this large not only push the current edge of storage technology,
-they present special problems for programs which attempt to access the
-entire file at once, such as <command>nces</command> and <command>ncecat</command>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="260">swap space</indexterm></cindex>
-If you work with a <w>300 MB</w> files on a machine with only <w>32 MB</w> of
-memory then you will need large amounts of swap space (virtual memory on
-disk) and <acronym><acronymword>NCO</acronymword></acronym> will work slowly, or even fail.
-There is no easy solution for this.
-The best strategy is to work on a machine with sufficient amounts of
-memory and swap space.
-Since about 2004, many users have begun to produce or analyze files
-exceeding <w>2 GB</w> in size.
-These users should familiarize themselves with <acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s Large
-File Support (<acronym><acronymword>LFS</acronymword></acronym>) capabilities (<pxref label="Large-File-Support"><xrefnodename>Large File Support</xrefnodename></pxref>).
-The next section will increase your familiarity with <acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s
-memory requirements.
-With this knowledge you may re-design your data reduction approach to
-divide the problem into pieces solvable in memory-limited situations.
-</para>
-<html endspaces=" ">
-<a name="ulimit"></a> <!&textndash; http://nco.sf.net/nco.html#ulimit &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="261">server</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="262"><acronym><acronymword>UNICOS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="263">Cray</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="264"><acronym><acronymword>GNU</acronymword></acronym>/Linux</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="265"><code>ulimit</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="266"><code>core dump</code></indexterm></cindex>
-<para>If your local machine has problems working with large files, try running
-<acronym><acronymword>NCO</acronymword></acronym> from a more powerful machine, such as a network server.
-If you get a memory-related core dump
-(e.g., <samp>Error exit (core dumped)</samp>) on a <acronym><acronymword>GNU</acronymword></acronym>/Linux system,
-or the operation ends before the entire output file is written,
-try increasing the process-available memory with <code>ulimit</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ulimit -f unlimited
-</pre></example>
-<para>This may solve constraints on clusters where sufficient hardware
-resources exist yet where system administrators felt it wise to prevent
-any individual user from consuming too much of resource.
-Certain machine architectures, e.g., Cray <acronym><acronymword>UNICOS</acronymword></acronym>, have special
-commands which allow one to increase the amount of interactive memory.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="267"><code>ilimit</code></indexterm></cindex>
-On Cray systems, try to increase the available memory with the
-<code>ilimit</code> command.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="268">speed</indexterm></cindex>
-<para>The speed of the <acronym><acronymword>NCO</acronymword></acronym> operators also depends on file size.
-When processing large files the operators may appear to hang, or do
-nothing, for large periods of time.
-In order to see what the operator is actually doing, it is useful to
-activate a more verbose output mode.
-This is accomplished by supplying a number greater <w>than 0</w> to the
-<samp>-D <var>debug-level</var></samp> (or <samp>--debug-level</samp>, or
-<samp>--dbg_lvl</samp>) switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="269"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="270"><code>--debug-level <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="271"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="272"><var>debug-level</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="273"><var>dbg_lvl</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="274">debugging</indexterm></cindex>
-When the <var>debug-level</var> is nonzero, the operators report their
-current status to the terminal through the <var>stderr</var> facility.
-Using <samp>-D</samp> does not slow the operators down.
-Choose a <var>debug-level</var> <w>between 1</w> <w>and 3</w> for most situations,
-e.g., <code>nces -D 2 85.nc 86.nc 8586.nc</code>.
-<w>A full</w> description of how to estimate the actual amount of memory the
-multi-file <acronym><acronymword>NCO</acronymword></acronym> operators consume is given in
-<ref label="Memory-Requirements"><xrefnodename>Memory Requirements</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="mmr"></a> <!&textndash; http://nco.sf.net/nco.html#mmr &textndash;>
-</html>
-</section>
-<node name="Memory-Requirements" spaces=" "><nodename>Memory Requirements</nodename><nodenext spaces=" ">Performance</nodenext><nodeprev spaces=" ">Large Datasets</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Memory Requirements</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="275">memory requirements</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="276">memory available</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="277"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="278">swap space</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="279">peak memory usage</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="280"><code>--ram_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="281"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="282"><code>--diskless_all</code></indexterm></cindex>
-
-<para>Many people use <acronym><acronymword>NCO</acronymword></acronym> on gargantuan files which dwarf the
-memory available (free <acronym><acronymword>RAM</acronymword></acronym> plus swap space) even on today&textrsquo;s powerful
-machines.
-These users want <acronym><acronymword>NCO</acronymword></acronym> to consume the least memory possible
-so that their scripts do not have to tediously cut files into smaller
-pieces that fit into memory.
-We commend these greedy users for pushing <acronym><acronymword>NCO</acronymword></acronym> to its limits!
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="283">threads</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="284">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="285">shared memory machines</indexterm></cindex>
-<para>This section describes the memory <acronym><acronymword>NCO</acronymword></acronym> requires during
-operation.
-The required memory is based on the underlying algorithms.
-The description below is the memory usage per thread.
-Users with shared memory machines may use the threaded <acronym><acronymword>NCO</acronymword></acronym>
-operators (<pxref label="OpenMP-Threading"><xrefnodename>OpenMP Threading</xrefnodename></pxref>).
-The peak and sustained memory usage will scale accordingly,
-i.e., by the number of threads.
-Memory consumption patterns of all operators are similar, with
-the exception of <command>ncap2</command>.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Single and Multi-file Operators</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Memory for ncap2</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Single-and-Multi_002dfile-Operators" spaces=" "><nodename>Single and Multi-file Operators</nodename><nodenext spaces=" ">Memory for ncap2</nodenext><nodeprev spaces=" ">Memory Requirements</nodeprev><nodeup spaces=" ">Memory Requirements</nodeup></node>
-<subsection spaces=" "><sectiontitle>Single and Multi-file Operators</sectiontitle>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="286">multi-file operators</indexterm></cindex>
-<para>The multi-file operators currently comprise the record operators,
-<command>ncra</command> and <command>ncrcat</command>, and the ensemble operators,
-<command>nces</command> and <command>ncecat</command>.
-The record operators require <emph>much less</emph> memory than the ensemble
-operators.
-This is because the record operators operate on one single record (i.e.,
-time-slice) at a time, whereas the ensemble operators retrieve the
-entire variable into memory.
-Let <math>MS</math> be the peak sustained memory demand of an operator,
-<math>FT</math> be the memory required to store the entire contents of all the
-variables to be processed in an input file,
-<math>FR</math> be the memory required to store the entire contents of a
-single record of each of the variables to be processed in an input file,
-<math>VR</math> be the memory required to store a single record of the
-largest record variable to be processed in an input file,
-<math>VT</math> be the memory required to store the largest variable
-to be processed in an input file,
-<math>VI</math> be the memory required to store the largest variable
-which is not processed, but is copied from the initial file to the
-output file.
-All operators require <math>MI = VI</math> during the initial copying of
-variables from the first input file to the output file.
-This is the <emph>initial</emph> (and transient) memory demand.
-The <emph>sustained</emph> memory demand is that memory required by the
-operators during the processing (i.e., averaging, concatenation)
-phase which lasts until all the input files have been processed.
-The operators have the following memory requirements:
-<command>ncrcat</command> requires <math>MS <= VR</math>.
-<command>ncecat</command> requires <math>MS <= VT</math>.
-<command>ncra</command> requires <math>MS = 2FR + VR</math>.
-<command>nces</command> requires <math>MS = 2FT + VT</math>.
-<command>ncbo</command> requires <math>MS <= 3VT</math>
-(both input variables and the output variable).
-<command>ncflint</command> requires <math>MS <= 3VT</math>
-(both input variables and the output variable).
-<command>ncpdq</command> requires <math>MS <= 2VT</math>
-(one input variable and the output variable).
-<command>ncwa</command> requires <math>MS <= 8VT</math> (see below).
-Note that only variables that are processed, e.g., averaged,
-concatenated, or differenced, contribute to <math>MS</math>.
-Variables which do not appear in the output file
-(<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>) are never read and contribute nothing
-to the memory requirements.
-</para>
-<para>Further note that some operators perform internal type-promotion on some
-variables prior to arithmetic (<pxref label="Type-Conversion"><xrefnodename>Type Conversion</xrefnodename></pxref>).
-For example, <command>ncra</command> and <command>nces</command> both promote integer
-types to double-precision floating point prior to arithmetic, then
-perform the arithmetic, then demote back to the original integer type
-after arithmetic.
-This preserves the on-disk storage type while obtaining the accuracy
-advantages of floating point arithmetic.
-Since version 4.3.6 (released in September, 2013), <acronym><acronymword>NCO</acronymword></acronym> also
-by default converts single-precision floating point to double-precision
-prior to arithmetic, which incurs the same <acronym><acronymword>RAM</acronymword></acronym> penalty.
-Hence, the sustained memory required for integer variables and
-single-precision floats are two or four-times their on-disk,
-uncompressed, unpacked sizes if they meet the rules for automatic
-internal promotion.
-Put another way, disabling auto-promotion of single-precision variables
-(with <samp>--flt</samp>) considerably reduces the <acronym><acronymword>RAM</acronymword></acronym> footprint
-of arithmetic operators.
-</para>
-<para>The <samp>--open_ram</samp> switch (and switches that invoke it like
-<samp>--ram_all</samp> and <samp>--diskless_all</samp>) incurs a <acronym><acronymword>RAM</acronymword></acronym>
-penalty.
-These switches cause each input file to be copied to <acronym><acronymword>RAM</acronymword></acronym> upon
-opening.
-Hence any operator invoking these switches utilizes an additional
-<math>FT</math> of <acronym><acronymword>RAM</acronymword></acronym> (i.e., <math>MS += FT</math>).
-See <ref label="RAM-disks"><xrefnodename>RAM disks</xrefnodename></ref> for further details.
-</para>
-<html endspaces=" ">
-<a name="mmr_ncwa"></a> <!&textndash; http://nco.sf.net/nco.html#mmr_ncwa &textndash;>
-</html>
-<para><command>ncwa</command> consumes between two and seven times the memory of a
-variable in order to process it.
-Peak consumption occurs when storing simultaneously in memory
-one input variable, one tally array,
-one input weight, one conformed/working weight, one weight tally,
-one input mask, one conformed/working mask, and
-one output variable.
-When invoked, the weighting and masking features contribute up to
-three-sevenths and two-sevenths of these requirements apiece.
-If weights and masks are <emph>not</emph> specified
-(i.e., no <samp>-w</samp> or <samp>-a</samp> options)
-then <command>ncwa</command> requirements drop to <math>MS <= 3VT</math>
-(one input variable, one tally array, and the output variable).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="287">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="288">threads</indexterm></cindex>
-<para>The above memory requirements must be multiplied by the number of
-threads <var>thr_nbr</var> (<pxref label="OpenMP-Threading"><xrefnodename>OpenMP Threading</xrefnodename></pxref>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="289"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
-If this causes problems then reduce (with <samp>-t <var>thr_nbr</var></samp>) the
-number of threads.
-</para>
-</subsection>
-<node name="Memory-for-ncap2" spaces=" "><nodename>Memory for ncap2</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Single and Multi-file Operators</nodeprev><nodeup spaces=" ">Memory Requirements</nodeup></node>
-<subsection spaces=" "><sectiontitle>Memory for <command>ncap2</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="290"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="291">binary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="292">unary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="293">memory leaks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="294">left hand casting</indexterm></cindex>
-<para><command>ncap2</command> has unique memory requirements due its ability to process
-arbitrarily long scripts of any complexity.
-All scripts acceptable to <command>ncap2</command> are ultimately processed as a
-sequence of binary or unary operations.
-<command>ncap2</command> requires <math>MS <= 2VT</math> under most conditions.
-An exception to this is when left hand casting (<pxref label="Left-hand-casting"><xrefnodename>Left hand
-casting</xrefnodename></pxref>) is used to stretch the size of derived variables beyond the
-size of any input variables.
-Let <math>VC</math> be the memory required to store the largest variable
-defined by left hand casting.
-In this case, <math>MS <= 2VC</math>.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="4" mergedindex="cp">malloc()</indexterm></findex>
-<para><command>ncap2</command> scripts are complete dynamic and may be of arbitrary
-length.
-A script that contains many thousands of operations, may uncover a
-slow memory leak even though each single operation consumes little
-additional memory.
-Memory leaks are usually identifiable by their memory usage signature.
-Leaks cause peak memory usage to increase monotonically with time
-regardless of script complexity.
-Slow leaks are very difficult to find.
-Sometimes a <command>malloc()</command> (or <command>new[]</command>) failure is the
-only noticeable clue to their existance.
-If you have good reasons to believe that a memory allocation failure
-is ultimately due to an <acronym><acronymword>NCO</acronymword></acronym> memory leak (rather than
-inadequate <acronym><acronymword>RAM</acronymword></acronym> on your system), then we would be very
-interested in receiving a detailed bug report.
-</para>
-</subsection>
-</section>
-<node name="Performance" spaces=" "><nodename>Performance</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Memory Requirements</nodeprev><nodeup spaces=" ">Strategies</nodeup></node>
-<section spaces=" "><sectiontitle>Performance</sectiontitle>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="295">papers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="296">overview</indexterm></cindex>
-<para>An overview of <acronym><acronymword>NCO</acronymword></acronym> capabilities as of about 2006 is in
-Zender, C. S. (2008),
-&textldquo;Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO)&textrdquo;,
-Environ. Modell. Softw., doi:10.1016/j.envsoft.2008.03.004.
-This paper is also available at
-<url><urefurl>http://dust.ess.uci.edu/ppr/ppr_Zen08.pdf</urefurl></url>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="297">scaling</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="298">performance</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> performance and scaling for arithmetic operations is
-described in
-Zender, C. S., and H. J. Mangalam (2007),
-&textldquo;Scaling Properties of Common Statistical Operators for Gridded Datasets&textrdquo;,
-Int. <w>J. High</w> Perform. Comput. Appl., 21(4), 485-498,
-doi:10.1177/1094342007083802.
-This paper is also available at
-<url><urefurl>http://dust.ess.uci.edu/ppr/ppr_ZeM07.pdf</urefurl></url>.
-</para>
-<para>It is helpful to be aware of the aspects of <acronym><acronymword>NCO</acronymword></acronym> design
-that can limit its performance:
-</para><enumerate first="1" endspaces=" ">
-<listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="299">buffering</indexterm></cindex>
-<para>No data buffering is performed during <command>nc_get_var</command> and
-<command>nc_put_var</command> operations.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="300">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="301">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="302">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="303">execution time</indexterm></cindex>
-Hyperslabs too large too hold in core memory will suffer substantial
-performance penalties because of this.
-</para>
-</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="304">monotonic coordinates</indexterm></cindex>
-<para>Since coordinate variables are assumed to be monotonic, the search for
-bracketing the user-specified limits should employ a quicker algorithm,
-like bisection, than the two-sided incremental search currently
-implemented.
-</para>
-</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="305"><var>C_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="306"><var>FORTRAN_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="307"><var>signedness</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="308"><var>scale_format</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="309"><var>add_offset</var></indexterm></cindex>
-<para><var>C_format</var>, <var>FORTRAN_format</var>, <var>signedness</var>,
-<var>scale_format</var> and <var>add_offset</var> attributes are ignored by
-<command>ncks</command> when printing variables to screen.
-</para>
-</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="310">Yorick</indexterm></cindex>
-<para>In the late 1990s it was discovered that some random access operations
-on large files on certain architectures (e.g., <acronym><acronymword>UNICOS</acronymword></acronym>) were
-much slower with <acronym><acronymword>NCO</acronymword></acronym> than with similar operations performed
-using languages that bypass the netCDF interface (e.g., Yorick).
-This may have been a penalty of unnecessary byte-swapping in the netCDF
-interface.
-It is unclear whether such problems exist in present day (2007)
-netCDF/<acronym><acronymword>NCO</acronymword></acronym> environments, where unnecessary byte-swapping has
-been reduced or eliminated.
-</para></listitem></enumerate>
-
-<html endspaces=" ">
-<a name="ftr"></a> <!&textndash; http://nco.sf.net/nco.html#ftr &textndash;>
-</html>
-</section>
-</chapter>
-<node name="Shared-features" spaces=" "><nodename>Shared features</nodename><nodenext spaces=" ">Reference Manual</nodenext><nodeprev spaces=" ">Strategies</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Shared Features</sectiontitle>
-
-<para>Many features have been implemented in more than one operator and are
-described here for brevity.
-The description of each feature is preceded by a box listing the
-operators for which the feature is implemented.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="311">command line switches</indexterm></cindex>
-Command line switches for a given feature are consistent across all
-operators wherever possible.
-If no &textldquo;key switches&textrdquo; are listed for a feature, then that particular
-feature is automatic and cannot be controlled by the user.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Internationalization</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Metadata Optimization</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">OpenMP Threading</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Command Line Options</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Specifying Input Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Specifying Output Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Remote storage</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Retaining Retrieved Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">File Formats and Conversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Large File Support</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Subsetting Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Subsetting Coordinate Variables</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Group Path Editing</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">C and Fortran Index Conventions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Hyperslabs</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Stride</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Record Appending</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Subcycle</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Multislabs</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Wrapped Coordinates</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Auxiliary Coordinates</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">UDUnits Support</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Rebasing Time Coordinate</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Multiple Record Dimensions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Missing Values</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Chunking</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Compression</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Deflation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">MD5 digests</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Buffer sizes</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">RAM disks</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Packed data</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Operation Types</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Type Conversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Batch Mode</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">History Attribute</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">File List Attributes</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">CF Conventions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ARM Conventions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Operator Version</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="i18n"></a> <!&textndash; http://nco.sf.net/nco.html#i18n &textndash;>
-</html>
-<node name="Internationalization" spaces=" "><nodename>Internationalization</nodename><nodenext spaces=" ">Metadata Optimization</nodenext><nodeprev spaces=" ">Shared features</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Internationalization</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="312">Internationalization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="313">I18N</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="314">L10N</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> support for <dfn>internationalization</dfn> of textual input
-and output (e.g., Warning messages) is nascent.
-We introduced the first foreign language string catalogues (French and
-Spanish) in 2004, yet did not activate these in distributions because
-the catalogues were nearly empty.
-We seek volunteers to populate our templates with translations for their
-favorite languages.
-<!-- c fxm: Work on this section -->
-</para>
-<html endspaces=" ">
-<a name="hdr"></a> <!&textndash; http://nco.sf.net/nco.html#hdr &textndash;>
-<a name="hdr_pad"></a> <!&textndash; http://nco.sf.net/nco.html#hdr_pad &textndash;>
-</html>
-</section>
-<node name="Metadata-Optimization" spaces=" "><nodename>Metadata Optimization</nodename><nodenext spaces=" ">OpenMP Threading</nodenext><nodeprev spaces=" ">Internationalization</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Metadata Optimization</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="315">metadata optimization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="316">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="317">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="318">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="319">execution time</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="320"><code>nc__enddef()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="321"><code>--hdr_pad <var>hdr_pad</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="322"><code>--header_pad <var>hdr_pad</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: None&linebreak;
-Long options: <samp>--hdr_pad</samp>, <samp>--header_pad</samp>&linebreak;
-</para></cartouche>
-<para><acronym><acronymword>NCO</acronymword></acronym> supports padding headers to improve the speed of future
-metadata operations.
-Use the <samp>--hdr_pad</samp> and <samp>--header_pad</samp> switches to request
-that <var>hdr_pad</var> bytes be inserted into the metadata section of the
-output file.
-Future metadata expansions will not incur the netCDF3 performance
-penalty of copying the entire output file unless the expansion exceeds
-the amount of header padding exceeded.
-This can be beneficial when it is known that some metadata will be added
-at a future date.
-The operators which benefit most from judicious use of header padding
-are <command>ncatted</command> and <command>ncrename</command>, since they only alter
-metadata.
-</para>
-<para>This optimization exploits the netCDF library <code>nc__enddef()</code>
-function, which behaves differently with different versions of netCDF.
-It will improve speed of future metadata expansion with <code>CLASSIC</code>
-and <code>64bit</code> netCDF files, though not necessarily with <code>NETCDF4</code>
-files, i.e., those created by the netCDF interface to the <acronym><acronymword>HDF5</acronymword></acronym>
-library (<pxref label="File-Formats-and-Conversion"><xrefnodename>File Formats and Conversion</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="omp"></a> <!&textndash; http://nco.sf.net/nco.html#omp &textndash;>
-<a name="openmp"></a> <!&textndash; http://nco.sf.net/nco.html#openmp &textndash;>
-</html>
-</section>
-<node name="OpenMP-Threading" spaces=" "><nodename>OpenMP Threading</nodename><nodenext spaces=" ">Command Line Options</nodenext><nodeprev spaces=" ">Metadata Optimization</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>OpenMP Threading</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="323">OpenMP</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="324">threads</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="325"><acronym><acronymword>SMP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="326">shared memory parallelism</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="327">parallelism</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="328"><code>nco_openmp_thread_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="329"><code>--thr_nbr <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="330"><code>--threads <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="331"><code>--omp_num_threads <var>thr_nbr</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="332"><code>-t <var>thr_nbr</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncrcat</command>,
-<command>ncwa</command>&linebreak;
-Short options: <samp>-t</samp>&linebreak;
-Long options: <samp>--thr_nbr</samp>, <samp>--threads</samp>,
-<samp>--omp_num_threads</samp>&linebreak;
-</para></cartouche>
-<para><acronym><acronymword>NCO</acronymword></acronym> supports shared memory parallelism (<acronym><acronymword>SMP</acronymword></acronym>) when
-compiled with an OpenMP-enabled compiler.
-Threads requests and allocations occur in two stages.
-First, users may request a specific number of threads <var>thr_nbr</var> with
-the <samp>-t</samp> switch (or its long option equivalents, <samp>--thr_nbr</samp>,
-<samp>--threads</samp>, and <samp>--omp_num_threads</samp>).
-If not user-specified, OpenMP obtains <var>thr_nbr</var> from the
-<code>OMP_NUM_THREADS</code> environment variable, if present, or from the
-<acronym><acronymword>OS</acronymword></acronym>, if not.
-</para>
-<cartouche endspaces=" ">
-<para>Caveat:
-Unfortunately, threading does not improve <acronym><acronymword>NCO</acronymword></acronym> throughput (i.e.,
-wallclock time) because nearly all <acronym><acronymword>NCO</acronymword></acronym> operations are
-I/O-bound.
-This means that <acronym><acronymword>NCO</acronymword></acronym> spends negligible time doing anything
-compared to reading and writing.
-We have seen some and can imagine other use cases where
-<command>ncwa</command>, <command>ncpdq</command>, and <command>ncap2</command> (with long scripts)
-will complete faster due to threading.
-The main benefits of threading so far have been to isolate the serial
-from parallel portions of code.
-This parallelism is now exploited by OpenMP but then runs into the I/O
-bottleneck during output.
-The bottleneck will be ameliorated for large files by the use of
-MPI-enabled calls in the netCDF4 library when the underlying filesystem
-is parallel (e.g., <acronym><acronymword>PVFS</acronymword></acronym> or <acronym><acronymword>JFS</acronymword></acronym>).
-Implementation of the parallel output calls in <acronym><acronymword>NCO</acronymword></acronym> is not a
-goal of our current funding and would require new volunteers or funding.
-</para></cartouche>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="333"><var>thr_nbr</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="334"><code>OMP_NUM_THREADS</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="335"><command>ncrcat</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="336"><command>ncwa</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="337"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="338"><command>ncpdq</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="339">large datasets</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> may modify <var>thr_nbr</var> according to its own internal
-settings before it requests any threads from the system.
-Certain operators contain hard-code limits to the number of threads they
-request.
-We base these limits on our experience and common sense, and to reduce
-potentially wasteful system usage by inexperienced users.
-For example, <code>ncrcat</code> is extremely I/O-intensive so we restrict
-<math><var>thr_nbr</var> <= 2</math> for <code>ncrcat</code>.
-This is based on the notion that the best performance that can be
-expected from an operator which does no arithmetic is to have one thread
-reading and one thread writing simultaneously.
-In the future (perhaps with netCDF4), we hope to demonstrate significant
-threading improvements with operators like <code>ncrcat</code> by performing
-multiple simultaneous writes.
-</para>
-<para>Compute-intensive operators (<code>ncap2</code>, <code>ncwa</code> and <code>ncpdq</code>)
-benefit most from threading.
-The greatest increases in throughput due to threading occur on
-large datasets where each thread performs millions, at least,
-of floating point operations.
-Otherwise, the system overhead of setting up threads probably outweighs
-the speed enhancements due to <acronym><acronymword>SMP</acronymword></acronym> parallelism.
-However, we have not yet demonstrated that the <acronym><acronymword>SMP</acronymword></acronym> parallelism
-scales beyond four threads for these operators.
-Hence we restrict <math><var>thr_nbr</var> <= 4</math> for all operators.
-We encourage users to play with these limits (edit file
-<file>nco_omp.c</file>) and send us their feedback.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="340">debugging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="341"><var>dbg_lvl</var></indexterm></cindex>
-<para>Once the initial <var>thr_nbr</var> has been modified for any
-operator-specific limits, <acronym><acronymword>NCO</acronymword></acronym> requests the system to allocate
-a team of <var>thr_nbr</var> threads for the body of the code.
-The operating system then decides how many threads to allocate
-based on this request.
-Users may keep track of this information by running the operator with
-<math><var>dbg_lvl</var> > 0</math>.
-</para>
-<para>By default, threaded operators attach one global attribute,
-<code>nco_openmp_thread_number</code>, to any file they create or modify.
-This attribute contains the number of threads the operator used to
-process the input files.
-This information helps to verify that the answers with threaded and
-non-threaded operators are equal to within machine precision.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="342">benchmarks</indexterm></cindex>
-This information is also useful for benchmarking.
-</para>
-<html endspaces=" ">
-<a name="cmd_ln"></a> <!&textndash; http://nco.sf.net/nco.html#cmd_ln &textndash;>
-</html>
-</section>
-<node name="Command-Line-Options" spaces=" "><nodename>Command Line Options</nodename><nodenext spaces=" ">Specifying Input Files</nodenext><nodeprev spaces=" ">OpenMP Threading</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Command Line Options</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="343">command line options</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="344"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="345"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="346"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="347">switches</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> achieves flexibility by using <dfn>command line options</dfn>.
-These options are implemented in all traditional <acronym><acronymword>UNIX</acronymword></acronym> commands
-as single letter <dfn>switches</dfn>, e.g., <samp>ls -l</samp>.
-For many years <acronym><acronymword>NCO</acronymword></acronym> used only single letter option names.
-In late 2002, we implemented <acronym><acronymword>GNU</acronymword></acronym>/<acronym><acronymword>POSIX</acronymword></acronym> extended
-or long option names for all options.
-This was done in a backward compatible way such that the full
-functionality of <acronym><acronymword>NCO</acronymword></acronym> is still available through the familiar
-single letter options.
-In the future, however, some features of <acronym><acronymword>NCO</acronymword></acronym> may require the
-use of long options, simply because we have nearly run out of single
-letter options.
-More importantly, mnemonics for single letter options are often
-non-intuitive so that long options provide a more natural way of
-expressing intent.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="348">long options</indexterm></cindex>
-<para>Extended options, also called long options, are implemented using the
-system-supplied <file>getopt.h</file> header file, if possible.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="349"><code>BSD</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="350"><code>getopt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="351"><code>getopt_long</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="352"><file>getopt.h</file></indexterm></cindex>
-This provides the <command>getopt_long</command> function to <acronym><acronymword>NCO</acronymword></acronym>
-<footnote spaces="\n"><para>If a <command>getopt_long</command> function cannot be found on the system,
-<acronym><acronymword>NCO</acronymword></acronym> will use the <command>getopt_long</command> from the
-<command>my_getopt</command> package by Benjamin Sittler
-<email><emailaddress>bsittler&arobase;iname.com</emailaddress></email>.
-This is <acronym><acronymword>BSD</acronymword></acronym>-licensed software available from
-<uref><urefurl>http://www.geocities.com/ResearchTriangle/Node/9405/#my_getopt</urefurl></uref>.</para></footnote>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="353"><code>-D <var>debug-level</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="354"><code>--dbg_lvl <var>debug-level</var></code></indexterm></cindex>
-<para>The syntax of <dfn>short options</dfn> (single letter options) is
-<kbd>-<var>key</var> <var>value</var></kbd> (dash-key-space-value).
-Here, <var>key</var> is the single letter option name, e.g.,
-<samp>-D 2</samp>.
-</para>
-<para>The syntax of <dfn>long options</dfn> (multi-letter options) is
-<kbd>--<var>long_name</var> <var>value</var></kbd>
-(dash-dash-key-space-value), e.g., <samp>--dbg_lvl 2</samp> or
-<kbd>--<var>long_name</var>=<var>value</var></kbd>
-(dash-dash-key-equal-value), e.g., <samp>--dbg_lvl=2</samp>.
-Thus the following are all valid for the <samp>-D</samp> (short version)
-or <samp>--dbg_lvl</samp> (long version) command line option.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -D 3 in.nc # Short option
-ncks --dbg_lvl=3 in.nc # Long option, preferred form
-ncks --dbg_lvl 3 in.nc # Long option, alternate form
-</pre></example>
-<noindent></noindent>
-<para>The last example is preferred for two reasons.
-First, <samp>--dbg_lvl</samp> is more specific and less ambiguous than
-<samp>-D</samp>.
-The long option form makes scripts more self documenting and less error
-prone.
-Often long options are named after the source code variable whose value
-they carry.
-Second, the equals sign <kbd>=</kbd> joins the key (i.e., <var>long_name</var>) to
-the value in an uninterruptible text block.
-Experience shows that users are less likely to mis-parse commands when
-restricted to this form.
-</para>
-<para><acronym><acronymword>GNU</acronymword></acronym> implements a superset of the <acronym><acronymword>POSIX</acronymword></acronym> standard
-which allows any unambiguous truncation of a valid option to be used.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -D 3 in.nc # Short option
-ncks --dbg_lvl=3 in.nc # Long option, full form
-ncks --dbg=3 in.nc # Long option, unambiguous truncation
-ncks --db=3 in.nc # Long option, unambiguous truncation
-ncks --d=3 in.nc # Long option, ambiguous truncation
-</pre></example>
-<noindent></noindent>
-<para>The first four examples are equivalent and will work as expected.
-The final example will exit with an error since <command>ncks</command> cannot
-disambiguate whether <samp>--d</samp> is intended as a truncation of
-<samp>--dbg_lvl</samp>, of <samp>--dimension</samp>, or of some other long option.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> provides many long options for common switches.
-For example, the debugging level may be set in all operators with any
-of the switches <samp>-D</samp>, <samp>--debug-level</samp>, or <samp>--dbg_lvl</samp>.
-This flexibility allows users to choose their favorite mnemonic.
-For some, it will be <samp>--debug</samp> (an unambiguous truncation of
-<samp>--debug-level</samp>, and other will prefer <samp>--dbg</samp>.
-Interactive users usually prefer the minimal amount of typing, i.e.,
-<samp>-D</samp>.
-We recommend that scripts which are re-usable employ some form of
-the long options for future maintainability.
-</para>
-<para>This manual generally uses the short option syntax in examples.
-This is for historical reasons and to conserve space in printed output.
-Users are expected to pick the unambiguous truncation of each option
-name that most suits their taste.
-</para>
-<html endspaces=" ">
-<a name="fl_in"></a> <!&textndash; http://nco.sf.net/nco.html#fl_in &textndash;>
-<a name="in"></a> <!&textndash; http://nco.sf.net/nco.html#in &textndash;>
-<a name="input"></a> <!&textndash; http://nco.sf.net/nco.html#input &textndash;>
-</html>
-</section>
-<node name="Specifying-Input-Files" spaces=" "><nodename>Specifying Input Files</nodename><nodenext spaces=" ">Specifying Output Files</nodenext><nodeprev spaces=" ">Command Line Options</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Specifying Input Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="355">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="356">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="357">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="358">wildcards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="359"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="360">Processor, <acronym><acronymword>CCM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="361"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="362"><code>-n <var>loop</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="363"><code>--nintap <var>loop</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="364"><code>-p <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="365"><code>--pth <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="366"><code>--path <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="367"><var>input-path</var></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability (<code>-n</code>): <command>nces</command>, <command>ncecat</command>, <command>ncra</command>, <command>ncrcat</command>&linebreak;
-Availability (<code>-p</code>): All operators&linebreak;
-Short options: <samp>-n</samp>, <samp>-p</samp>&linebreak;
-Long options: <samp>--nintap</samp>, <samp>--pth</samp>, <samp>--path</samp>&linebreak;
-</para></cartouche>
-<para>It is important that users be able to specify multiple input files
-without typing every filename in full, often a tedious task even
-by graduate student standards.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="368"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-There are four different ways of specifying input files to <acronym><acronymword>NCO</acronymword></acronym>:
-explicitly typing each, using <acronym><acronymword>UNIX</acronymword></acronym> shell wildcards, and using
-the <acronym><acronymword>NCO</acronymword></acronym> <samp>-n</samp> and <samp>-p</samp> switches (or their long option
-equivalents, <samp>--nintap</samp> or <samp>--pth</samp> and <samp>--path</samp>,
-respectively).
-Techniques to augment these methods to specify arbitrary numbers (e.g.,
-thousands) and patterns of filenames are discussed separately
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-</para>
-<para>To illustrate these methods, consider the simple problem of using
-<command>ncra</command> to average five input files, <file>85.nc</file>, <file>86.nc</file>,
-<w>&dots; <file>89.nc</file></w>, and store the results in <file>8589.nc</file>.
-Here are the four methods in order.
-They produce identical answers.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra 8[56789].nc 8589.nc
-ncra -p <var>input-path</var> 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra -n 5,2,1 85.nc 8589.nc
-</pre></example>
-<para>The first method (explicitly specifying all filenames) works by brute
-force.
-The second method relies on the operating system shell to <dfn>glob</dfn>
-(expand) the <dfn>regular expression</dfn> <code>8[56789].nc</code>.
-The shell then passes the valid filenames (those which match the
-regular expansion) to <command>ncra</command>.
-In this case <command>ncra</command> never knows that a regular expression was
-used, because the shell intercepts and expands and matches the regular
-expression before <command>ncra</command> is actually invoked.
-The third method uses the <samp>-p <var>input-path</var></samp> argument to specify
-the directory where all the input files reside.
-<acronym><acronymword>NCO</acronymword></acronym> prepends <var>input-path</var> (e.g.,
-<file>/data/username/model</file>) to all <var>input-files</var> (though not to
-<var>output-file</var>).
-Thus, using <samp>-p</samp>, the path to any number of input files need only
-be specified once.
-Note <var>input-path</var> need not end with <samp>/</samp>; the <samp>/</samp> is
-automatically generated if necessary.
-</para>
-<para>The last method passes (with <samp>-n</samp>) syntax concisely describing
-the entire set of filenames
-<footnote><para>The <samp>-n</samp> option is a backward-compatible superset of the
-<code>NINTAP</code> option from the <acronym><acronymword>NCAR</acronymword></acronym> <acronym><acronymword>CCM</acronymword></acronym> Processor.
-The <acronym><acronymword>CCM</acronymword></acronym> Processor was custom-written Fortran code maintained
-for many years by Lawrence Buja at <acronym><acronymword>NCAR</acronymword></acronym>, and phased-out in
-the late 1990s.
-<acronym><acronymword>NCO</acronymword></acronym> stole some ideas, like <code>NINTAP</code>-functionality,
-from the <acronym><acronymword>CCM</acronymword></acronym> Processor capabilities.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="369">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="370">files, multiple</indexterm></cindex>
-This option is only available with the <dfn>multi-file operators</dfn>:
-<command>ncra</command>, <command>ncrcat</command>, <command>nces</command>, and <command>ncecat</command>.
-By definition, multi-file operators are able to process an arbitrary
-number of <var>input-files</var>.
-This option is very useful for abbreviating lists of filenames
-representable as
-<var>alphanumeric_prefix</var>+<var>numeric_suffix</var>+<file>.</file>+<var>filetype</var>
-where <var>alphanumeric_prefix</var> is a string of arbitrary length and
-composition, <var>numeric_suffix</var> is a fixed width field of digits, and
-<var>filetype</var> is a standard filetype indicator.
-For example, in the file <file>ccm3_h0001.nc</file>, we have
-<var>alphanumeric_prefix</var> = <file>ccm3_h</file>, <var>numeric_suffix</var> =
-<file>0001</file>, and <var>filetype</var> = <file>nc</file>.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> decodes lists of such filenames encoded using the
-<samp>-n</samp> syntax.
-The simpler (3-argument) <samp>-n</samp> usage takes the form
-<code>-n <var>file_number</var>,<var>digit_number</var>,<var>numeric_increment</var></code>
-where <var>file_number</var> is the number of files, <var>digit_number</var> is
-the fixed number of numeric digits comprising the <var>numeric_suffix</var>,
-and <var>numeric_increment</var> is the constant, integer-valued difference
-between the <var>numeric_suffix</var> of any two consecutive files.
-The value of <var>alphanumeric_prefix</var> is taken from the input file,
-which serves as a template for decoding the filenames.
-In the example above, the encoding <code>-n 5,2,1</code> along with the input
-file name <file>85.nc</file> tells <acronym><acronymword>NCO</acronymword></acronym> to
-construct five (5) filenames identical to the template <file>85.nc</file>
-except that the final two (2) digits are a numeric suffix to be
-incremented by one (1) for each successive file.
-Currently <var>filetype</var> may be either be empty, <file>nc</file>,
-<file>cdf</file>, <file>hdf</file>, or <file>hd5</file>.
-If present, these <var>filetype</var> suffixes (and the preceding <file>.</file>)
-are ignored by <acronym><acronymword>NCO</acronymword></acronym> as it uses the <samp>-n</samp> arguments to
-locate, evaluate, and compute the <var>numeric_suffix</var> component of
-filenames.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="371">wrapped filenames</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="372">climate model</indexterm></cindex>
-<para>Recently the <samp>-n</samp> option has been extended to allow convenient
-specification of filenames with &textldquo;circular&textrdquo; characteristics.
-This means it is now possible for <acronym><acronymword>NCO</acronymword></acronym> to automatically
-generate filenames which increment regularly until a specified maximum
-value, and then wrap back to begin again at a specified minimum value.
-The corresponding <samp>-n</samp> usage becomes more complex, taking one or
-two additional arguments for a total of four or five, respectively:
-<code>-n
-<var>file_number</var>,<var>digit_number</var>,<var>numeric_increment</var>[,<var>numeric_max</var>[,<var>numeric_min</var>]]</code>
-where <var>numeric_max</var>, if present, is the maximum integer-value of
-<var>numeric_suffix</var> and <var>numeric_min</var>, if present, is the minimum
-integer-value of <var>numeric_suffix</var>.
-Consider, for example, the problem of specifying non-consecutive input
-files where the filename suffixes end with the month index.
-In climate modeling it is common to create summertime and wintertime
-averages which contain the averages of the months June&textndash;July&textndash;August,
-and December&textndash;January&textndash;February, respectively:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -n 3,2,1 85_06.nc 85_0608.nc
-ncra -n 3,2,1,12 85_12.nc 85_1202.nc
-ncra -n 3,2,1,12,1 85_12.nc 85_1202.nc
-</pre></example>
-<para>The first example shows that three arguments to the <samp>-n</samp> option
-suffice to specify consecutive months (<code>06, 07, 08</code>) which do not
-&textldquo;wrap&textrdquo; back to a minimum value.
-The second example shows how to use the optional fourth and fifth
-elements of the <samp>-n</samp> option to specify a wrap value.
-The fourth argument to <samp>-n</samp>, when present, specifies the maximum
-integer value of <var>numeric_suffix</var>.
-In the example the maximum value <w>is 12,</w> and will be formatted as
-<file>12</file> in the filename string.
-The fifth argument to <samp>-n</samp>, when present, specifies the minimum
-integer value of <var>numeric_suffix</var>.
-The default minimum filename suffix <w>is 1,</w> which is formatted as
-<file>01</file> in this case.
-Thus the second and third examples have the same effect, that is, they
-automatically generate, in order, the filenames <file>85_12.nc</file>,
-<file>85_01.nc</file>, and <file>85_02.nc</file> as input to <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<html endspaces=" ">
-<a name="fl_out"></a> <!&textndash; http://nco.sf.net/nco.html#fl_out &textndash;>
-<a name="out"></a> <!&textndash; http://nco.sf.net/nco.html#out &textndash;>
-<a name="output"></a> <!&textndash; http://nco.sf.net/nco.html#output &textndash;>
-</html>
-</section>
-<node name="Specifying-Output-Files" spaces=" "><nodename>Specifying Output Files</nodename><nodenext spaces=" ">Remote storage</nodenext><nodeprev spaces=" ">Specifying Input Files</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Specifying Output Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="373">output file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="374">input files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="375">positional arguments</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="376">command line switches</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="377"><code>-o <var>fl_out</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="378"><code>--output <var>fl_out</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="379"><code>--fl_out <var>fl_out</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-o</samp>&linebreak;
-Long options: <samp>--fl_out</samp>, <samp>--output</samp>&linebreak;
-</para></cartouche>
-<para><acronym><acronymword>NCO</acronymword></acronym> commands produce no more than one output file, <var>fl_out</var>.
-Traditionally, users specify <var>fl_out</var> as the final argument to the
-operator, following all input file names.
-This is the <dfn>positional argument</dfn> method of specifying input and
-ouput file names.
-The positional argument method works well in most applications.
-<acronym><acronymword>NCO</acronymword></acronym> also supports specifying <var>fl_out</var> using the command
-line switch argument method, <samp>-o <var>fl_out</var></samp>.
-</para>
-<para>Specifying <var>fl_out</var> with a switch, rather than as a positional
-argument, allows <var>fl_out</var> to precede input files in the argument
-list.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="380">multi-file operators</indexterm></cindex>
-This is particularly useful with multi-file operators for three reasons.
-Multi-file operators may be invoked with hundreds (or more) filenames.
-Visual or automatic location of <var>fl_out</var> in such a list is
-difficult when the only syntactic distinction between input and output
-files is their position.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="381"><command>xargs</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="382">input files</indexterm></cindex>
-Second, specification of a long list of input files may be difficult
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-Making the input file list the final argument to an operator facilitates
-using <command>xargs</command> for this purpose.
-Some alternatives to <command>xargs</command> are heinous and undesirable.
-Finally, many users are more comfortable specifying output files
-with <samp>-o <var>fl_out</var></samp> near the beginning of an argument list.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="383">compilers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="384">linkers</indexterm></cindex>
-Compilers and linkers are usually invoked this way.
-</para>
-<para>Users should specify <var>fl_out</var> using either (not both) method.
-If <var>fl_out</var> is specified twice (once with the switch and once as
-the last positional argument), then the positional argument takes
-precedence.
-</para>
-<html endspaces=" ">
-<a name="rmt"></a> <!&textndash; http://nco.sf.net/nco.html#rmt &textndash;>
-</html>
-</section>
-<node name="Remote-storage" spaces=" "><nodename>Remote storage</nodename><nodenext spaces=" ">Retaining Retrieved Files</nodenext><nodeprev spaces=" ">Specifying Output Files</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Accessing Remote Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="385"><code>rcp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="386"><code>scp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="387"><file>.rhosts</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="388"><acronym><acronymword>NCAR MSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="389"><acronym><acronymword>MSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="390">Mass Store System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="391"><acronym><acronymword>URL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="392"><code>ftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="393"><code>sftp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="394"><code>wget</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="395">remote files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="396">synchronous file access</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="397">asynchronous file access</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="398"><code>--pth <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="399"><code>--path <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="400"><code>--lcl <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="401"><code>--local <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="402"><code>-l <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="403"><file>.netrc</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="404"><code>history</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-p</samp>, <samp>-l</samp>&linebreak;
-Long options: <samp>--pth</samp>, <samp>--path</samp>, <samp>--lcl</samp>, <samp>--local</samp>&linebreak;
-</para></cartouche>
-<para>All <acronym><acronymword>NCO</acronymword></acronym> operators can retrieve files from remote sites as well
-as from the local file system.
-<w>A remote</w> site can be an anonymous <acronym><acronymword>FTP</acronymword></acronym> server, a machine on
-which the user has <command>rcp</command>, <command>scp</command>, or <command>sftp</command>
-privileges, <acronym><acronymword>NCAR</acronymword></acronym>&textrsquo;s Mass Storage System (<acronym><acronymword>MSS</acronymword></acronym>), or
-an <acronym><acronymword>OPeNDAP</acronymword></acronym> server.
-Examples of each are given below, following a brief description of the
-particular access protocol.
-</para>
-<html endspaces=" ">
-<a name="ftp"></a> <!&textndash; http://nco.sf.net/nco.html#ftp &textndash;>
-</html>
-<para>To access a file via an anonymous <acronym><acronymword>FTP</acronymword></acronym> server, simply supply
-the remote file&textrsquo;s <acronym><acronymword>URL</acronymword></acronym>.
-Anonymous <acronym><acronymword>FTP</acronymword></acronym> usually requires no further credentials,
-e.g., no <file>.netrc</file> file is necessary.
-<acronym><acronymword>FTP</acronymword></acronym> is an intrinsically insecure protocol because it transfers
-passwords in plain text format.
-Users should access sites using anonymous <acronym><acronymword>FTP</acronymword></acronym>, or better yet,
-secure <acronym><acronymword>FTP</acronymword></acronym> (<acronym><acronymword>SFTP</acronymword></acronym>, see below) when possible.
-Some <acronym><acronymword>FTP</acronymword></acronym> servers require a login/password combination for a
-valid user account.
-<acronym><acronymword>NCO</acronymword></acronym> allows transactions that require additional credentials
-so long as the required information is stored in the <file>.netrc</file> file.
-Usually this information is the remote machine name, login, and
-password, in plain text, separated by those very keywords, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">machine dust.ess.uci.edu login zender password bushlied
-</pre></example>
-<para>Eschew using valuable passwords for <acronym><acronymword>FTP</acronymword></acronym> transactions, since
-<file>.netrc</file> passwords are potentially exposed to eavesdropping
-software
-<footnote><para><acronym><acronymword>NCO</acronymword></acronym> does not implement command line options to
-specify <acronym><acronymword>FTP</acronymword></acronym> logins and passwords because copying those data
-into the <code>history</code> global attribute in the output file (done by
-default) poses an unacceptable security risk.
-</para></footnote>.
-</para>
-<html endspaces=" ">
-<a name="sftp"></a> <!&textndash; http://nco.sf.net/nco.html#sftp &textndash;>
-</html>
-<para><acronym><acronymword>SFTP</acronymword></acronym>, i.e., secure <acronym><acronymword>FTP</acronymword></acronym>, uses <acronym><acronymword>SSH</acronymword></acronym>-based
-security protocols that solve the security issues associated with
-plain <acronym><acronymword>FTP</acronymword></acronym>.
-<acronym><acronymword>NCO</acronymword></acronym> supports <acronym><acronymword>SFTP</acronymword></acronym> protocol access to files
-specified with a homebrew syntax of the form
-</para><example endspaces=" ">
-<pre xml:space="preserve">sftp://machine.domain.tld:/path/to/filename
-</pre></example>
-<para>Note the second colon following the top-level-domain, <code>tld</code>.
-This syntax is a hybrid between an <acronym><acronymword>FTP URL</acronymword></acronym> and standard
-remote file syntax.
-</para>
-<html endspaces=" ">
-<a name="rcp"></a> <!&textndash; http://nco.sf.net/nco.html#rcp &textndash;>
-<a name="scp"></a> <!&textndash; http://nco.sf.net/nco.html#scp &textndash;>
-</html>
-<para>To access a file using <command>rcp</command> or <command>scp</command>, specify the
-Internet address of the remote file.
-Of course in this case you must have <command>rcp</command> or <command>scp</command>
-privileges which allow transparent (no password entry required) access
-to the remote machine.
-This means that <file>~/.rhosts</file> or <file>~/ssh/authorized_keys</file> must
-be set accordingly on both local and remote machines.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="405"><acronym><acronymword>HPSS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="406"><command>hsi</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="407"><command>msrcp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="408"><command>msread</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="409"><command>nrnet</command></indexterm></cindex>
-<html endspaces=" ">
-<a name="hpss"></a> <!&textndash; http://nco.sf.net/nco.html#hpss &textndash;>
-<a name="HPSS"></a> <!&textndash; http://nco.sf.net/nco.html#HPSS &textndash;>
-<a name="hsi"></a> <!&textndash; http://nco.sf.net/nco.html#hsi &textndash;>
-<a name="HSI"></a> <!&textndash; http://nco.sf.net/nco.html#HSI &textndash;>
-<a name="msrcp"></a> <!&textndash; http://nco.sf.net/nco.html#msrcp &textndash;>
-<a name="msread"></a> <!&textndash; http://nco.sf.net/nco.html#msread &textndash;>
-<a name="nrnet"></a> <!&textndash; http://nco.sf.net/nco.html#nrnet &textndash;>
-</html>
-<para>To access a file on a High Performance Storage System (<acronym><acronymword>HPSS</acronymword></acronym>)
-(such as that at <acronym><acronymword>NCAR</acronymword></acronym>, <acronym><acronymword>ECMWF</acronymword></acronym>, <acronym><acronymword>LANL</acronymword></acronym>,
-<acronym><acronymword>DKRZ</acronymword></acronym>, <acronym><acronymword>LLNL</acronymword></acronym>) specify the full <acronym><acronymword>HPSS</acronymword></acronym> pathname
-of the remote file.
-<acronym><acronymword>NCO</acronymword></acronym> will attempt to detect whether the local machine has direct
-(synchronous) <acronym><acronymword>HPSS</acronymword></acronym> access.
-In this case, <acronym><acronymword>NCO</acronymword></acronym> attempts to use the Hierarchical Storage
-Interface (<acronym><acronymword>HSI</acronymword></acronym>) command <command>hsi get</command>
-<footnote><para>The <command>hsi</command> command must be in the user&textrsquo;s path in one of
-the following directories: <code>/usr/local/bin</code>, <code>/opt/hpss/bin</code>,
-or <code>/ncar/opt/hpss/hsi</code>.
-Tell us if the <acronym><acronymword>HPSS</acronymword></acronym> installation at your site places the
-<command>hsi</command> command in a different location, and we will add that
-location to the list of acceptable paths to search for <command>hsi</command>.
-</para></footnote>.
-</para>
-<para>The following examples show how one might analyze files stored on
-remote systems.
-<!-- c HPSS syntax at http://www2.cisl.ucar.edu/docs/hpss/hsi -->
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -l . ftp://dust.ess.uci.edu/pub/zender/nco/in.nc
-ncks -l . sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco/in.nc
-ncks -l . dust.ess.uci.edu:/home/zender/nco/data/in.nc
-ncks -l . /ZENDER/nco/in.nc
-ncks -l . /home/zender/nco/in.nc
-ncks -l . http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
-</pre></example>
-<noindent></noindent>
-<para>The first example works verbatim if your system is connected to the
-Internet and is not behind a firewall.
-The second example works if you have <command>sftp</command> access to the
-machine <code>dust.ess.uci.edu</code>.
-The third example works if you have <command>rcp</command> or <command>scp</command>
-access to the machine <code>dust.ess.uci.edu</code>.
-The fourth and fifth examples work on <acronym><acronymword>NCAR</acronymword></acronym> computers with
-local access to the <acronym><acronymword>HPSS</acronymword></acronym> <command>hsi get</command> command
-<footnote><para><acronym><acronymword>NCO</acronymword></acronym> supported the old <acronym><acronymword>NCAR</acronymword></acronym> Mass Storage
-System (<acronym><acronymword>MSS</acronymword></acronym>) until version 4.0.7 in April, 2011.
-<acronym><acronymword>NCO</acronymword></acronym> supported <acronym><acronymword>MSS</acronymword></acronym>-retrievals via a variety of
-mechanisms including the <command>msread</command>, <command>msrcp</command>, and
-<command>nrnet</command> commands invoked either automatically or with sentinels
-like <command>ncks -p mss:/ZENDER/nco -l . in.nc</command>.
-Once the <acronym><acronymword>MSS</acronymword></acronym> was decommissioned in March, 2011, support for
-these retrieval mechanisms was replaced by support for <acronym><acronymword>HPSS</acronymword></acronym>
-in <acronym><acronymword>NCO</acronymword></acronym>.
-</para></footnote>.
-The sixth command works if your local version of <acronym><acronymword>NCO</acronymword></acronym> is
-<acronym><acronymword>OPeNDAP</acronymword></acronym>-enabled (this is fully described in <ref label="OPeNDAP"><xrefnodename>OPeNDAP</xrefnodename></ref>),
-or if the remote file is accessible via <command>wget</command>.
-The above commands can be rewritten using the <samp>-p <var>input-path</var></samp>
-option as follows:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="410"><code>-p <var>input-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="411"><var>input-path</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="412"><code>-l <var>output-path</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="413"><var>output-path</var></indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -p ftp://dust.ess.uci.edu/pub/zender/nco -l . in.nc
-ncks -p sftp://dust.ess.uci.edu:/home/ftp/pub/zender/nco -l . in.nc
-ncks -p dust.ess.uci.edu:/home/zender/nco -l . in.nc
-ncks -p /ZENDER/nco -l . in.nc
-ncks -p /home/zender/nco -l . in.nc # HPSS
-ncks -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l . in.nc
-</pre></example>
-<noindent></noindent>
-<para>Using <samp>-p</samp> is recommended because it clearly separates the
-<var>input-path</var> from the filename itself, sometimes called the
-<dfn>stub</dfn>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="414">stub</indexterm></cindex>
-When <var>input-path</var> is not explicitly specified using <samp>-p</samp>,
-<acronym><acronymword>NCO</acronymword></acronym> internally generates an <var>input-path</var> from the first
-input filename.
-The automatically generated <var>input-path</var> is constructed by stripping
-the input filename of everything following the final <samp>/</samp> character
-(i.e., removing the stub).
-The <samp>-l <var>output-path</var></samp> option tells <acronym><acronymword>NCO</acronymword></acronym> where to
-store the remotely retrieved file.
-It has no effect on locally-retrieved files, or on the output file.
-Often the path to a remotely retrieved file is quite different than the
-path on the local machine where you would like to store the file.
-If <samp>-l</samp> is not specified then <acronym><acronymword>NCO</acronymword></acronym> internally generates an
-<var>output-path</var> by simply setting <var>output-path</var> equal to
-<var>input-path</var> stripped of any machine names.
-If <samp>-l</samp> is not specified and the remote file resides on the
-<acronym><acronymword>NCAR</acronymword></acronym> <acronym><acronymword>HPSS</acronymword></acronym> system, then the leading character of
-<var>input-path</var>, <samp>/</samp>, is also stripped from <var>output-path</var>.
-Specifying <var>output-path</var> as <samp>-l ./</samp> tells <acronym><acronymword>NCO</acronymword></acronym> to
-store the remotely retrieved file and the output file in the current
-directory.
-Note that <samp>-l .</samp> is equivalent to <samp>-l ./</samp> though the latter is
-syntactically more clear.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">OPeNDAP</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="dap"></a> <!&textndash; http://nco.sf.net/nco.html#dap &textndash;>
-<a name="DAP"></a> <!&textndash; http://nco.sf.net/nco.html#DAP &textndash;>
-<a name="DODS"></a> <!&textndash; http://nco.sf.net/nco.html#DODS &textndash;>
-<a name="OPeNDAP"></a> <!&textndash; http://nco.sf.net/nco.html#OPeNDAP &textndash;>
-<a name="dods"></a> <!&textndash; http://nco.sf.net/nco.html#dods &textndash;>
-<a name="opendap"></a> <!&textndash; http://nco.sf.net/nco.html#opendap &textndash;>
-</html>
-<node name="OPeNDAP" spaces=" "><nodename>OPeNDAP</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Remote storage</nodeprev><nodeup spaces=" ">Remote storage</nodeup></node>
-<subsection spaces=" "><sectiontitle><acronym><acronymword>OPeNDAP</acronymword></acronym></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="415"><acronym><acronymword>DAP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="416"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="417"><acronym><acronymword>HTTP</acronymword></acronym> protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="418"><env>DODS_ROOT</env></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="419">Distributed Oceanographic Data System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="420">oceanography</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="421">data access protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="422">Open-source Project for a Network Data Access Protocol</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="423"><acronym><acronymword>OPeNDAP</acronymword></acronym>.</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="424">server</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="425">client-server</indexterm></cindex>
-<para>The Distributed Oceanographic Data System (<acronym><acronymword>DODS</acronymword></acronym>) provides
-useful replacements for common data interface libraries like netCDF.
-The <acronym><acronymword>DODS</acronymword></acronym> versions of these libraries implement network
-transparent access to data via a client-server data access protocol
-that uses the <acronym><acronymword>HTTP</acronymword></acronym> protocol for communication.
-Although <acronym><acronymword>DODS</acronymword></acronym>-technology originated with oceanography data,
-it applyies to virtually all scientific data.
-In recognition of this, the data access protocol underlying
-<acronym><acronymword>DODS</acronymword></acronym> (which is what <acronym><acronymword>NCO</acronymword></acronym> cares about) has been
-renamed the Open-source Project for a Network Data Access Protocol,
-<acronym><acronymword>OPeNDAP</acronymword></acronym>.
-We use the terms <acronym><acronymword>DODS</acronymword></acronym> and <acronym><acronymword>OPeNDAP</acronymword></acronym> interchangeably,
-and often write <acronym><acronymword>OPeNDAP</acronymword></acronym>/<acronym><acronymword>DODS</acronymword></acronym> for now.
-In the future we will deprecate <acronym><acronymword>DODS</acronymword></acronym> in favor of
-<acronym><acronymword>DAP</acronymword></acronym> or <acronym><acronymword>OPeNDAP</acronymword></acronym>, as appropriate
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="426"><acronym><acronymword>NVODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="427">National Virtual Ocean Data System</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="428">open source</indexterm></cindex>
-<para><acronym><acronymword>DODS</acronymword></acronym> is being deprecated because it is ambiguous, referring
-both to a protocol and to a collection of (oceanography) data.
-It is superceded by two terms.
-<acronym><acronymword>DAP</acronymword></acronym> is the discipline-neutral Data Access Protocol at the
-heart of <acronym><acronymword>DODS</acronymword></acronym>.
-The National Virtual Ocean Data System (<acronym><acronymword>NVODS</acronymword></acronym>) refers to the
-collection of oceanography data and oceanographic extensions to
-<acronym><acronymword>DAP</acronymword></acronym>.
-In other words, <acronym><acronymword>NVODS</acronymword></acronym> is implemented with <acronym><acronymword>OPeNDAP</acronymword></acronym>.
-<acronym><acronymword>OPeNDAP</acronymword></acronym> is <emph>also</emph> the open source project which
-maintains, develops, and promulgates the <acronym><acronymword>DAP</acronymword></acronym> standard.
-<acronym><acronymword>OPeNDAP</acronymword></acronym> and <acronym><acronymword>DAP</acronymword></acronym> really are interchangeable.
-Got it yet?</para></footnote>.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> may be <acronym><acronymword>DAP</acronymword></acronym>-enabled by linking
-<acronym><acronymword>NCO</acronymword></acronym> to the <acronym><acronymword>OPeNDAP</acronymword></acronym> libraries.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="429"><file>Makefile</file></indexterm></cindex>
-This is described in the <acronym><acronymword>OPeNDAP</acronymword></acronym> documentation and
-automagically implemented in <acronym><acronymword>NCO</acronymword></acronym> build mechanisms
-<footnote spaces="\n"><para>Automagic support for <acronym><acronymword>DODS</acronymword></acronym> version 3.2.x was deprecated in
-December, 2003 after <acronym><acronymword>NCO</acronymword></acronym> version 2.8.4.
-<acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>OPeNDAP</acronymword></acronym> versions 3.4.x commenced in
-December, 2003, with <acronym><acronymword>NCO</acronymword></acronym> version 2.8.5.
-<acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>OPeNDAP</acronymword></acronym> versions 3.5.x commenced in
-June, 2005, with <acronym><acronymword>NCO</acronymword></acronym> version 3.0.1.
-<acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>OPeNDAP</acronymword></acronym> versions 3.6.x commenced in
-June, 2006, with <acronym><acronymword>NCO</acronymword></acronym> version 3.1.3.
-<acronym><acronymword>NCO</acronymword></acronym> support for <acronym><acronymword>OPeNDAP</acronymword></acronym> versions 3.7.x commenced in
-January, 2007, with <acronym><acronymword>NCO</acronymword></acronym> version 3.1.9.</para></footnote>.
-The <file>./configure</file> mechanism automatically enables <acronym><acronymword>NCO</acronymword></acronym> as
-<acronym><acronymword>OPeNDAP</acronymword></acronym> clients if it can find the required
-<acronym><acronymword>OPeNDAP</acronymword></acronym> libraries
-<footnote spaces="\n"><para>The minimal set of libraries required to build <acronym><acronymword>NCO</acronymword></acronym> as
-<acronym><acronymword>OPeNDAP</acronymword></acronym> clients, where <acronym><acronymword>OPeNDAP</acronymword></acronym> is supplied as a
-separate library apart from <file>libnetcdf.a</file>, are, in link order,
-<file>libnc-dap.a</file>, <file>libdap.a</file>, and
-<file>libxml2</file> and <file>libcurl.a</file>.</para></footnote>.
- in the usual locations.
-The <env>$DODS_ROOT</env> environment variable may be used to override the
-default <acronym><acronymword>OPeNDAP</acronymword></acronym> library location at <acronym><acronymword>NCO</acronymword></acronym>
-compile-time.
-Building <acronym><acronymword>NCO</acronymword></acronym> with <file>bld/Makefile</file> and the command
-<code>make DODS=Y</code> adds the (non-intuitive) commands to link to the
-<acronym><acronymword>OPeNDAP</acronymword></acronym> libraries installed in the <env>$DODS_ROOT</env>
-directory.
-The file <file>doc/opendap.sh</file> contains a generic script intended to help
-users install <acronym><acronymword>OPeNDAP</acronymword></acronym> before building <acronym><acronymword>NCO</acronymword></acronym>.
-The documentation at the
-<uref><urefurl>http://www.opendap.org</urefurl><urefdesc spaces=" ">OPeNDAP Homepage</urefdesc></uref>
-is voluminous.
-Check there and on the
-<uref><urefurl>http://www.unidata.ucar.edu/packages/dods/home/mailLists/</urefurl><urefdesc spaces=" ">DODS mail lists</urefdesc></uref>.
-to learn more about the extensive capabilities of <acronym><acronymword>OPeNDAP</acronymword></acronym>
-<footnote spaces="\n"><para>We are most familiar with the <acronym><acronymword>OPeNDAP</acronymword></acronym> ability to enable
-network-transparent data access.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="430">constraint expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="431">server-side processing</indexterm></cindex>
-<acronym><acronymword>OPeNDAP</acronymword></acronym> has many other features, including sophisticated
-hyperslabbing and server-side processing via <dfn>constraint expressions</dfn>.
-If you know more about this, please consider writing a section
-on &textldquo;<acronym><acronymword>OPeNDAP</acronymword></acronym> Capabilities of Interest to <acronym><acronymword>NCO</acronymword></acronym> Users&textrdquo;
-for incorporation in the <cite>NCO User Guide</cite>.</para></footnote>.
-</para>
-<para>Once <acronym><acronymword>NCO</acronymword></acronym> is <acronym><acronymword>DAP</acronymword></acronym>-enabled the operators are
-<acronym><acronymword>OPeNDAP</acronymword></acronym> clients.
-All <acronym><acronymword>OPeNDAP</acronymword></acronym> clients have network transparent access to
-any files controlled by a <acronym><acronymword>OPeNDAP</acronymword></acronym> server.
-Simply specify the input file path(s) in <acronym><acronymword>URL</acronymword></acronym> notation and all
-<acronym><acronymword>NCO</acronymword></acronym> operations may be performed on remote files made
-accessible by a <acronym><acronymword>OPeNDAP</acronymword></acronym> server.
-This command tests the basic functionality of <acronym><acronymword>OPeNDAP</acronymword></acronym>-enabled
-<acronym><acronymword>NCO</acronymword></acronym> clients:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
-% ncks -H -v one ~/foo.nc
-one = 1
-</pre></example>
-<para>The <code>one = 1</code> outputs confirm (first) that <command>ncks</command> correctly
-retrieved data via the <acronym><acronymword>OPeNDAP</acronymword></acronym> protocol and (second) that
-<command>ncks</command> created a valid local copy of the subsetted remote file.
-With minor changes to the above command, netCDF4 can be used as both the
-input and output file format:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -4 -O -o ~/foo.nc -C -H -v one -l /tmp \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
-% ncks -H -v one ~/foo.nc
-one = 1
-</pre></example>
-<para>And, of course, <acronym><acronymword>OPeNDAP</acronymword></acronym>-enabled <acronym><acronymword>NCO</acronymword></acronym> clients continue
-to support orthogonal features such as UDUnits
-(<pxref label="UDUnits-Support"><xrefnodename>UDUnits Support</xrefnodename></pxref>):
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -u -C -H -v wvl -d wvl,'0.4 micron','0.7 micron' \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in_4.nc
-% wvl[0]=5e-07 meter
-</pre></example>
-
-<para>The next command is a more advanced example which demonstrates the real
-power of <acronym><acronymword>OPeNDAP</acronymword></acronym>-enabled <acronym><acronymword>NCO</acronymword></acronym> clients.
-The <command>ncwa</command> client requests an equatorial hyperslab from remotely
-stored <acronym><acronymword>NCEP reanalyses data</acronymword></acronym> of the <w>year 1969</w>.
-The <acronym><acronymword>NOAA</acronymword></acronym> <acronym><acronymword>OPeNDAP</acronymword></acronym> server (hopefully!) serves these data.
-The local <command>ncwa</command> client then computes and stores (locally) the
-regional mean surface pressure <w>(in Pa)</w>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc ~/foo.nc
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="432">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="433">unpacking</indexterm></cindex>
-<para>All with one command!
-The data in this particular input file also happen to be packed
-(<pxref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></pxref>), although this complication is
-transparent to the user since <acronym><acronymword>NCO</acronymword></acronym> automatically unpacks data
-before attempting arithmetic.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> obtains remote files from the <acronym><acronymword>OPeNDAP</acronymword></acronym> server
-(e.g., <file>www.cdc.noaa.gov</file>) rather than the local machine.
-Input files are first copied to the local machine, then processed.
-The <acronym><acronymword>OPeNDAP</acronymword></acronym> server performs data access, hyperslabbing,
-and transfer to the local machine.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="434">I/O</indexterm></cindex>
-This allows the I/O to appear to <acronym><acronymword>NCO</acronymword></acronym> as if the input files
-were local.
-The local machine performs all arithmetic operations.
-Only the hyperslabbed output data are transferred over the network (to
-the local machine) for the number-crunching to begin.
-The advantages of this are obvious if you are examining small parts of
-large files stored at remote locations.
-</para>
-<para>Natually there are many versions of <acronym><acronymword>OPeNDAP</acronymword></acronym> servers supplying
-data and bugs in the server can appear to be bugs in <acronym><acronymword>NCO</acronymword></acronym>.
-However, with very few exceptions
-<footnote><para>For example, <acronym><acronymword>DAP</acronymword></acronym> servers do not like variables with
-periods (&textldquo;.&textrdquo;) in their names even though this is perfectly legal with
-netCDF.
-Such names may cause the <acronym><acronymword>DAP</acronymword></acronym> service to fail because
-<acronym><acronymword>DAP</acronymword></acronym> interprets the period as structure delimiter in an
-<acronym><acronymword>HTTP</acronymword></acronym> query string.</para></footnote> an <acronym><acronymword>NCO</acronymword></acronym> command that works
-on a local file must work across an <acronym><acronymword>OPeNDAP</acronymword></acronym> connection or else
-there is a bug in the server.
-This is because <acronym><acronymword>NCO</acronymword></acronym> does nothing special to handle files
-served by <acronym><acronymword>OPeNDAP</acronymword></acronym>, the whole process is (supposed to be)
-completely transparent to the client <acronym><acronymword>NCO</acronymword></acronym> software.
-Therefore it is often useful to try <acronym><acronymword>NCO</acronymword></acronym> commands on various
-<acronym><acronymword>OPeNDAP</acronymword></acronym> servers in order to isolate whether a problem may be
-due to a bug in the <acronym><acronymword>OPeNDAP</acronymword></acronym> server on a particular machine.
-For this purpose, one might try variations of the following commands
-that access files on public <acronym><acronymword>OPeNDAP</acronymword></acronym> servers:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Strided access to HDF5 file
-ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/opendap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5
-# Strided access to netCDF3 file
-ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u_velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtofs_glo_2ds_forecast_daily_prog ~/foo.nc
-</pre></example>
-<noindent></noindent>
-<para>These servers were operational at the time of writing, March 2014.
-Unfortunately, administrators often move or rename path directories.
-Recommendations for additional public <acronym><acronymword>OPeNDAP</acronymword></acronym> servers on
-which to test <acronym><acronymword>NCO</acronymword></acronym> are welcome.
-</para>
-<html endspaces=" ">
-<a name="rtn"></a> <!&textndash; http://nco.sf.net/nco.html#rtn &textndash;>
-</html>
-</subsection>
-</section>
-<node name="Retaining-Retrieved-Files" spaces=" "><nodename>Retaining Retrieved Files</nodename><nodenext spaces=" ">File Formats and Conversion</nodenext><nodeprev spaces=" ">Remote storage</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Retaining Retrieved Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="435">file deletion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="436">file removal</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="437">file retention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="438"><code>-R</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="439"><code>--rtn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="440"><code>--retain</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-R</samp>&linebreak;
-Long options: <samp>--rtn</samp>, <samp>--retain</samp>&linebreak;
-</para></cartouche>
-<para>In order to conserve local file system space, files retrieved from
-remote locations are automatically deleted from the local file system
-once they have been processed.
-Many <acronym><acronymword>NCO</acronymword></acronym> operators were constructed to work with numerous
-large (e.g., <w>200 MB</w>) files.
-Retrieval of multiple files from remote locations is done serially.
-Each file is retrieved, processed, then deleted before the cycle
-repeats.
-In cases where it is useful to keep the remotely-retrieved files on the
-local file system after processing, the automatic removal feature may be
-disabled by specifying <samp>-R</samp> on the command line.
-</para>
-<para>Invoking <code>-R</code> disables the default printing behavior of
-<command>ncks</command>.
-This allows <command>ncks</command> to retrieve remote files without
-automatically trying to print them.
-See <ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref>, for more details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="441"><acronym><acronymword>FTP</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="442"><acronym><acronymword>SSH</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="443"><acronym><acronymword>msrcp</acronymword></acronym></indexterm></cindex>
-<para>Note that the remote retrieval features of <acronym><acronymword>NCO</acronymword></acronym> can always be
-used to retrieve <emph>any</emph> file, including non-netCDF files, via
-<command>SSH</command>, anonymous <acronym><acronymword>FTP</acronymword></acronym>, or <command>msrcp</command>.
-Often this method is quicker than using a browser, or running an
-<acronym><acronymword>FTP</acronymword></acronym> session from a shell window yourself.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="444">server</indexterm></cindex>
-For example, say you want to obtain a <acronym><acronymword>JPEG</acronymword></acronym> file from a weather
-server.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -R -p ftp://weather.edu/pub/pix/jpeg -l . storm.jpg
-</pre></example>
-<noindent></noindent>
-<para>In this example, <command>ncks</command> automatically performs an anonymous
-<acronym><acronymword>FTP</acronymword></acronym> login to the remote machine and retrieves the specified
-file.
-When <command>ncks</command> attempts to read the local copy of <file>storm.jpg</file>
-as a netCDF file, it fails and exits, leaving <file>storm.jpg</file> in
-the current directory.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="445"><acronym><acronymword>DODS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="446">server</indexterm></cindex>
-<para>If your <acronym><acronymword>NCO</acronymword></acronym> is <acronym><acronymword>DAP</acronymword></acronym>-enabled (<pxref label="OPeNDAP"><xrefnodename>OPeNDAP</xrefnodename></pxref>),
-then you may use <acronym><acronymword>NCO</acronymword></acronym> to retrieve any files (including netCDF,
-<acronym><acronymword>HDF</acronymword></acronym>, etc.) served by an <acronym><acronymword>OPeNDAP</acronymword></acronym> server to your local
-machine.
-For example,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -R -l . -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
- pres.sfc.1969.nc
-</pre></example>
-<para>It may occasionally be useful to use <acronym><acronymword>NCO</acronymword></acronym> to transfer files
-when your other preferred methods are not available locally.
-</para>
-<html endspaces=" ">
-<a name="fl_fmt"></a> <!&textndash; http://nco.sf.net/nco.html#fl_fmt &textndash;>
-<a name="hdf"></a> <!&textndash; http://nco.sf.net/nco.html#hdf &textndash;>
-<a name="64bit"></a> <!&textndash; http://nco.sf.net/nco.html#64bit &textndash;>
-<a name="netcdf4"></a> <!&textndash; http://nco.sf.net/nco.html#netcdf4 &textndash;>
-</html>
-</section>
-<node name="File-Formats-and-Conversion" spaces=" "><nodename>File Formats and Conversion</nodename><nodenext spaces=" ">Large File Support</nodenext><nodeprev spaces=" ">Retaining Retrieved Files</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>File Formats and Conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="447"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="448">netCDF2</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="449">netCDF3</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="450">netCDF4</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="451"><code>NETCDF4_CLASSIC</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="452"><code>NETCDF4</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="453"><code>CLASSIC</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="454"><code>64BIT</code> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="455"><code>--3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="456"><code>-3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="457"><code>-4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="458"><code>-5</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="459"><code>-6</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="460"><code>-7</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="461"><code>--4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="462"><code>--5</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="463"><code>--6</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="464"><code>--7</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="465"><code>--netcdf4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="466"><code>--fl_fmt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="467"><code>--file_format</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="468"><code>--64bit</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-3</samp>, <samp>-4</samp>, <samp>-6</samp>, <samp>-7</samp>&linebreak;
-Long options: <samp>--3</samp>, <samp>--4</samp>, <samp>--6</samp>, <samp>--64bit</samp>, <samp>--7</samp>, <samp>--fl_fmt</samp>,
-<samp>--netcdf4</samp>&linebreak;
-</para></cartouche>
-<para>All <acronym><acronymword>NCO</acronymword></acronym> operators support (read and write) all three (or four,
-depending on how one counts) file formats supported by netCDF4.
-The default output file format for all operators is the input file
-format.
-The operators listed under &textldquo;Availability&textrdquo; above allow the user to
-specify the output file format independent of the input file format.
-These operators allow the user to convert between the various file
-formats.
-(The operators <command>ncatted</command> and <command>ncrename</command> do not support
-these switches so they always write the output netCDF file in the same
-format as the input netCDF file.)
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">File Formats</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Determining File Format</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">File Conversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Autoconversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="File-Formats" spaces=" "><nodename>File Formats</nodename><nodenext spaces=" ">Determining File Format</nodenext><nodeprev spaces=" ">File Formats and Conversion</nodeprev><nodeup spaces=" ">File Formats and Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>File Formats</sectiontitle>
-<para>netCDF supports four types of files: <code>CLASSIC</code>, <code>64BIT</code>,
-<code>NETCDF4</code>, and <code>NETCDF4_CLASSIC</code>,
-The <code>CLASSIC</code> format is the traditional 32-bit offset written by
-netCDF2 and netCDF3.
-As of 2005, nearly all netCDF datasets were in <code>CLASSIC</code> format.
-The <code>64BIT</code> format was added in Fall, 2004.
-As of 2010, many netCDF datasets were in <code>64BIT</code> format.
-As of 2013, an increasing number of netCDF datasets were in
-<code>NETCDF4_CLASSIC</code> format.
-</para>
-<para>The <code>NETCDF4</code> format uses <acronym><acronymword>HDF5</acronymword></acronym> as the file storage layer.
-The files are (usually) created, accessed, and manipulated using the
-traditional netCDF3 <acronym><acronymword>API</acronymword></acronym> (with numerous extensions).
-The <code>NETCDF4_CLASSIC</code> format refers to netCDF4 files created with
-the <code>NC_CLASSIC_MODEL</code> mask.
-Such files use <acronym><acronymword>HDF5</acronymword></acronym> as the back-end storage format (unlike
-netCDF3), though they incorporate only netCDF3 features.
-Hence <code>NETCDF4_CLASSIC</code> files are entirely readable by applications
-that use only the netCDF3 <acronym><acronymword>API</acronymword></acronym> (though the applications must be
-linked with the netCDF4 library).
-<acronym><acronymword>NCO</acronymword></acronym> must be built with <w>netCDF4</w> to write files in the new
-<code>NETCDF4</code> and <code>NETCDF4_CLASSIC</code> formats, and to read files in
-these formats.
-Datasets in the default <code>CLASSIC</code> or the newer <code>64BIT</code> formats
-have maximum backwards-compatibility with older applications.
-<acronym><acronymword>NCO</acronymword></acronym> has deep support for <code>NETCDF4</code> formats.
-If performance or disk-space as important as backwards compatibility,
-then use <code>NETCDF4_CLASSIC</code> instead of <code>CLASSIC</code> format files.
-As of 2014, <acronym><acronymword>NCO</acronymword></acronym> support for the <code>NETCDF4</code> format is
-nearly complete and the most powerful and disk/<acronym><acronymword>RAM</acronymword></acronym> efficient
-workflows will utilize this format.
-</para>
-<para>As mentioned above, all operators write use the input file format for
-output files unless told otherwise.
-Toggling the short option <samp>-6</samp> or the long option <samp>--6</samp> or
-<samp>--64bit</samp> (or their <var>key</var>-<var>value</var> equivalent
-<samp>--fl_fmt=64bit</samp>) produces the netCDF3 64-bit offset format named
-<code>64BIT</code>.
-<acronym><acronymword>NCO</acronymword></acronym> must be built with <w>netCDF 3.6</w> or higher to produce
-a <code>64BIT</code> file.
-Using the <samp>-4</samp> switch (or its long option equivalents
-<samp>--4</samp> or <samp>--netcdf4</samp>), or setting its <var>key</var>-<var>value</var>
-equivalent <samp>--fl_fmt=netcdf4</samp> produces a <code>NETCDF4</code> file
-(i.e., with all supported <acronym><acronymword>HDF5</acronymword></acronym> features).
-Using the <samp>-7</samp> switch (or its long option equivalent
-<samp>--7</samp>
-<footnote spaces="\n"><para>The reason (and mnemonic) for <samp>-7</samp> is that <code>NETCDF4_CLASSIC</code>
-files include great features of both netCDF3 (compatibility) and
-netCDF4 (compression, chunking) and, well, <math>3+4=7</math>.</para></footnote>, or
-setting its <var>key</var>-<var>value</var> equivalent
-<samp>--fl_fmt=netcdf4_classic</samp> produces a <code>NETCDF4_CLASSIC</code>
-file (i.e., with all supported <acronym><acronymword>HDF5</acronymword></acronym> features like compression
-and chunking but without groups or new atomic types).
-Operators given the <samp>-3</samp> (or <samp>--3</samp>) switch without arguments
-will (attempt to) produce netCDF3 <code>CLASSIC</code> output, even from
-netCDF4 input files.
-</para>
-<para>Note that <code>NETCDF4</code> and <code>NETCDF4_CLASSIC</code> are the same
-binary format.
-The latter simply causes a writing application to fail if it attempts to
-write a <code>NETCDF4</code> file that cannot be completely read by the
-netCDF3 library.
-Conversely, <code>NETCDF4_CLASSIC</code> indicates to a reading application
-that all of the file contents are readable with the netCDF3 library.
-<acronym><acronymword>NCO</acronymword></acronym> has supported reading/writing basic <code>NETCDF4</code> and
-<code>NETCDF4_CLASSIC</code> files since October, 2005.
-</para>
-<html endspaces=" ">
-<a name="fmt_inq"></a> <!&textndash; http://nco.sf.net/nco.html#fmt_inq &textndash;>
-</html>
-</subsection>
-<node name="Determining-File-Format" spaces=" "><nodename>Determining File Format</nodename><nodenext spaces=" ">File Conversion</nodenext><nodeprev spaces=" ">File Formats</nodeprev><nodeup spaces=" ">File Formats and Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>Determining File Format</sectiontitle>
-<para>Input files often end with the generic <code>.nc</code> suffix that leaves
-(perhaps by intention) the internal file format ambiguous.
-There are at least three ways to discover the internal format of a
-netCDF-supported file.
-These methods determine whether it is a classic (32-bit offset) or newer
-64-bit offset netCDF3 format, or is a netCDF4 format.
-Each method returns the information using slightly different terminology
-that becomes easier to understand with practice.
-</para>
-<para>First, examine the first line of global metadata output by <samp>ncks -M</samp>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="469">netCDF3 classic file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="470">netCDF4 classic file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="471">netCDF4 file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="472">32-bit offset file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="473">64-bit offset file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="474"><command>ncks</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="475"><code>-M</code></indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -M foo_3c.nc
-Summary of foo_3c.nc: filetype = NC_FORMAT_CLASSIC, 0 groups ...
-% ncks -M foo_364.nc
-Summary of foo_364.nc: filetype = NC_FORMAT_64BIT, 0 groups ...
-% ncks -M foo_4c.nc
-Summary of foo_4c.nc: filetype = NC_FORMAT_NETCDF4_CLASSIC, 0 groups ...
-% ncks -M foo_4.nc
-Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4, 0 groups ...
-</pre></example>
-<para>This method requires a netCDF4-enabled <acronym><acronymword>NCO</acronymword></acronym> version 3.9.0+
-(i.e., from 2007 or later).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="476">extended file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="477">underlying file format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="478"><code>NC_FORMAT_NC3</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="479"><code>NC_FORMAT_NC_HDF5</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="480"><code>NC_FORMAT_NC_HDF4</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="481"><code>NC_FORMAT_PNETCDF</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="482"><code>NC_FORMAT_DAP2</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="483"><code>NC_FORMAT_DAP4</code></indexterm></cindex>
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), <command>ncks</command> will
-also print the extended or underlying format of the input file.
-The extended filetype will be one of the six underlying formats that
-are accessible through the netCDF <acronym><acronymword>API</acronymword></acronym>.
-These formats are
-<code>NC_FORMAT_NC3</code> (classic and 64-bit versions of netCDF3 formats),
-<code>NC_FORMAT_NC_HDF5</code> (classic and extended versions of netCDF4, and
-&textldquo;pure&textrdquo; HDF5 format),
-<code>NC_FORMAT_NC_HDF4</code> (HDF4 format),
-<code>NC_FORMAT_PNETCDF</code> (PnetCDF format),
-<code>NC_FORMAT_DAP2</code> (accessed via DAP2 protocol), and
-<code>NC_FORMAT_DAP4</code> (accessed via DAP2 protocol).
-For example,
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -D 2 -M hdf.hdf
-Summary of hdf.hdf: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF4), 0 groups ...
-% ncks -D 2 -M http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc
-Summary of http://thredds-test.ucar.edu/thredds/dodsC/testdods/in.nc: \
- filetype = NC_FORMAT_CLASSIC (representation of extended/underlying \
- filetype NC_FORMAT_DAP2), 0 groups
-% ncks -D 2 -M foo_4.nc
-Summary of foo_4.nc: filetype = NC_FORMAT_NETCDF4 (representation of \
- extended/underlying filetype NC_FORMAT_HDF5), 0 groups
-</pre></example>
-<para>The extended filetype determines some of the capabilities that netCDF
-has to alter the file.
-</para>
-<para>Second, query the file with <samp>ncdump -k</samp>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="484"><command>ncdump</command></indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncdump -k foo_3c.nc
-classic
-% ncdump -k foo_364.nc
-64-bit-offset
-% ncdump -k foo_4c.nc
-netCDF-4 classic model
-% ncdump -k foo_4.nc
-netCDF-4
-</pre></example>
-<para>This method requires a netCDF4-enabled <acronym><acronymword>netCDF</acronymword></acronym> 3.6.2+
-(i.e., from 2007 or later).
-</para>
-<para>The third option uses the POSIX-standard <command>od</command> (octal dump)
-command:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="485"><command>od</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="486">octal dump</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">% od -An -c -N4 foo_3c.nc
- C D F 001
-% od -An -c -N4 foo_364.nc
- C D F 002
-% od -An -c -N4 foo_4c.nc
- 211 H D F
-% od -An -c -N4 foo_4.nc
- 211 H D F
-</pre></example>
-<para>This option works without <acronym><acronymword>NCO</acronymword></acronym> and <command>ncdump</command>.
-Values of <samp>C D F 001</samp> and <samp>C D F 002</samp> indicate 32-bit
-(classic) and 64-bit netCDF3 formats, respectively, while values of
-<samp>211 H D F</samp> indicate either of the newer netCDF4 file formats.
-</para>
-<html endspaces=" ">
-<a name="hdf2nc"></a> <!&textndash; http://nco.sf.net/nco.html#hdf2nc &textndash;>
-<a name="3to4"></a> <!&textndash; http://nco.sf.net/nco.html#3to4 &textndash;>
-<a name="4to3"></a> <!&textndash; http://nco.sf.net/nco.html#4to3 &textndash;>
-</html>
-</subsection>
-<node name="File-Conversion" spaces=" "><nodename>File Conversion</nodename><nodenext spaces=" ">Autoconversion</nodenext><nodeprev spaces=" ">Determining File Format</nodeprev><nodeup spaces=" ">File Formats and Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>File Conversion</sectiontitle>
-<para>Let us demonstrate converting a file from any netCDF-supported
-input format into any netCDF output format (subject to limits of the
-output format).
-Here the input file <file>in.nc</file> may be in any of these formats:
-netCDF3 (classic and 64bit), netCDF4 (classic and extended), HDF4, HDF5,
-HDF-EOS (version 2 or 5), and DAP.
-The switch determines the output format written in the comment:
-<footnote><para>The switches <samp>-5</samp>, <samp>--5</samp>, and <samp>pnetcdf</samp> are
-reserved for PnetCDF files, i.e., <code>NC_FORMAT_PNETCDF</code>.
-Such files are similar to netCDF3 classic files, yet also support
-64-bit offsets and the additional netCDF4 atomic types.</para></footnote>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --fl_fmt=classic in.nc foo_3c.nc # netCDF3 classic
-ncks --fl_fmt=64bit in.nc foo_364.nc # netCDF3 64bit
-ncks --fl_fmt=netcdf4_classic in.nc foo_4c.nc # netCDF4 classic
-ncks --fl_fmt=netcdf4 in.nc foo_4.nc # netCDF4
-ncks -3 in.nc foo_3c.nc # netCDF3 classic
-ncks --3 in.nc foo_3c.nc # netCDF3 classic
-ncks -6 in.nc foo_364.nc # netCDF3 64bit
-ncks --64 in.nc foo_364.nc # netCDF3 64bit
-ncks -4 in.nc foo_4.nc # netCDF4
-ncks --4 in.nc foo_4.nc # netCDF4
-ncks -7 in.nc foo_4c.nc # netCDF4 classic
-ncks --7 in.nc foo_4c.nc # netCDF4 classic
-</pre></example>
-<para>Of course since most operators support these switches, the
-&textldquo;conversions&textrdquo; can be done at the output stage of arithmetic
-or metadata processing rather than requiring a separate step.
-Producing (netCDF3) <code>CLASSIC</code> or <code>64BIT</code> files from
-<code>NETCDF4_CLASSIC</code> files will always work.
-</para>
-<html endspaces=" ">
-<a name="autoconversion"></a> <!&textndash; http://nco.sf.net/nco.html#autoconversion &textndash;>
-<a name="autocnv"></a> <!&textndash; http://nco.sf.net/nco.html#autocnv &textndash;>
-</html>
-</subsection>
-<node name="Autoconversion" spaces=" "><nodename>Autoconversion</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">File Conversion</nodeprev><nodeup spaces=" ">File Formats and Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>Autoconversion</sectiontitle>
-<para>Because of the dearth of support for netCDF4 amongst tools and user
-communities (including the <acronym><acronymword>CF</acronymword></acronym> conventions), it is often useful
-to convert netCDF4 to netCDF3 for certain applications.
-Until <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), producing netCDF3
-files from netCDF4 files only worked if the input files contained no
-netCDF4-specific features (e.g., atomic types, multiple record
-dimensions, or groups).
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0, <command>ncks</command> supports
-<dfn>autoconversion</dfn> of many netCDF4 features to their closest
-netCDF3-compatible representations.
-Since converting netCDF4 to netCDF3 results in loss of features,
-&textldquo;automatic down-conversion&textrdquo; may be a more precise description of what
-we term autoconversion.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> employs three algorithms to downconvert netCDF4 to netCDF3:
-</para><enumerate first="1" endspaces=" ">
-<listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="487">autoconversion</indexterm></cindex>
-<para>Autoconversion of atomic types:
-Autoconversion automatically promotes <code>NC_UBYTE</code> to <code>NC_SHORT</code>,
-and <code>NC_USHORT</code> to <code>NC_INT</code>.
-It automatically demotes the three types <code>NC_UINT</code>,
-<code>NC_UINT64</code>, and <code>NC_INT64</code> to <code>NC_INT</code>.
-And it converts <code>NC_STRING</code> to <code>NC_CHAR</code>.
-All numeric conversions work for attributes and variables of any rank.
-Two numeric types (<code>NC_UBYTE</code> and <code>NC_USHORT</code>) are
-<emph>promoted</emph> to types with greater range (and greater storage).
-This extra range is often not used so promotion perhaps conveys
-the wrong impression.
-However, promotion never truncates values or loses data (this perhaps
-justifies the extra storage).
-Three numeric types (<code>NC_UINT</code>, <code>NC_UINT64</code> and
-<code>NC_INT64</code>) are <emph>demoted</emph>.
-Since the input range is larger than the output range, demotion can
-result in numeric truncation and thus loss of data.
-In such cases, it would possible to convert the data to floating point
-values instead.
-If this feature interests you, please be the squeaky wheel and let us
-know.
-</para>
-<para>String conversions (to <code>NC_CHAR</code>) work for all attributes, but
-not for variables.
-This is because attributes are at most one-dimensional and may be of any
-size whereas variables require gridded dimensions that usually do not
-fit the ragged sizes of text strings.
-Hence scalar <code>NC_STRING</code> attributes are correctly converted to and
-stored as <code>NC_CHAR</code> attributes in the netCDF3 output file, but
-<code>NC_STRING</code> variables are not correctly converted.
-If this limitation annoys or enrages you, please let us know by being
-the squeaky wheel.
-</para>
-</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="488"><code>--fix_rec_dmn all</code></indexterm></cindex>
-<para>Convert multiple record dimensions to fixed-size dimensions.
-Many netCDF4 and <acronym><acronymword>HDF5</acronymword></acronym> datasets have multiple unlimited
-dimensions.
-Since a netCDF3 file may have at most one unlimited dimension, all but
-possibly one unlimited dimension from the input file must be converted
-to fixed-length dimensions prior to storing netCDF4 input as netCDF3
-output.
-By invoking <code>--fix_rec_dmn all</code> the user ensures the output file
-will adhere to netCDF3 conventions and the user need not know the names
-of the specific record dimensions to fix.
-See <ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref> for a description of the
-<samp>--fix_rec_dmn</samp> option.
-</para>
-</listitem><listitem>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="489">flattening</indexterm></cindex>
-<para>Flattening (removal) of groups.
-Many netCDF4 and <acronym><acronymword>HDF5</acronymword></acronym> datasets have group hierarchies.
-Since a netCDF3 file may not have any groups, groups in the input file
-must be removed.
-This is also called &textldquo;flattening&textrdquo; the hierarchical file.
-See <ref label="Group-Path-Editing"><xrefnodename>Group Path Editing</xrefnodename></ref> for a description of the <acronym><acronymword>GPE</acronymword></acronym>
-option <samp>-G :</samp> to flatten files.
-</para></listitem></enumerate>
-
-<para>Putting the three algorithms together, one sees that the recipe to
-convert netCDF4 to netCDF4 becomes increasingly complex as the netCDF4
-features in the input file become more elaborate:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Convert file with netCDF4 atomic types
-ncks -3 in.nc4 out.nc3
-# Convert file with multiple record dimensions + netCDF4 atomic types
-ncks -3 --fix_rec_dmn=all in.nc4 out.nc3
-# Convert file with groups, multiple record dimensions + netCDF4 atomic types
-ncks -3 -G : --fix_rec_dmn=all in.nc4 out.nc3
-</pre></example>
-<para>Future versions of <acronym><acronymword>NCO</acronymword></acronym> may automatically invoke the record
-dimension fixation and group flattening when converting to netCDF3
-(rather than requiring it be specified manually).
-If this feature would interest you, please let us know.
-</para>
-<html endspaces=" ">
-<a name="lfs"></a> <!&textndash; http://nco.sf.net/nco.html#lfs &textndash;>
-</html>
-</subsection>
-</section>
-<node name="Large-File-Support" spaces=" "><nodename>Large File Support</nodename><nodenext spaces=" ">Subsetting Files</nodenext><nodeprev spaces=" ">File Formats and Conversion</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Large File Support</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="490"><acronym><acronymword>LFS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="491">Large File Support</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: none&linebreak;
-Long options: none&linebreak;
-</para></cartouche>
-<para><acronym><acronymword>NCO</acronymword></acronym> has Large File Support (<acronym><acronymword>LFS</acronymword></acronym>), meaning that
-<acronym><acronymword>NCO</acronymword></acronym> can write files larger than <w>2 GB</w> on some 32-bit
-operating systems with netCDF libraries earlier than <w>version 3.6</w>.
-If desired, <acronym><acronymword>LFS</acronymword></acronym> support must be configured when both netCDF and
-<acronym><acronymword>NCO</acronymword></acronym> are installed.
-netCDF <w>versions 3.6</w> and higher support 64-bit file addresses as part
-of the netCDF standard.
-We recommend that users ignore <acronym><acronymword>LFS</acronymword></acronym> support which is difficult to
-configure and is implemented in <acronym><acronymword>NCO</acronymword></acronym> only to support netCDF
-versions prior <w>to 3.6</w>.
-This obviates the need for configuring explicit <acronym><acronymword>LFS</acronymword></acronym> support in
-applications (such as <acronym><acronymword>NCO</acronymword></acronym>) that now support 64-bit files
-directly through the netCDF interface.
-See <ref label="File-Formats-and-Conversion"><xrefnodename>File Formats and Conversion</xrefnodename></ref> for instructions on accessing
-the different file formats, including 64-bit files, supported by the
-modern netCDF interface.
-</para>
-<para>If you are still interested in explicit <acronym><acronymword>LFS</acronymword></acronym> support for netCDF versions
-prior <w>to 3.6</w>, know that <acronym><acronymword>LFS</acronymword></acronym> support depends on a complex,
-interlocking set of operating system
-<footnote spaces="\n"><para>Linux and <acronym><acronymword>AIX</acronymword></acronym> do support <acronym><acronymword>LFS</acronymword></acronym>.</para></footnote>
-and netCDF support issues.
-The netCDF <acronym><acronymword>LFS</acronymword></acronym>
-<uref><urefurl>http://my.unidata.ucar.edu/content/software/netcdf/faq-lfs.html</urefurl><urefdesc>FAQ</urefdesc></uref>
-describes the various file size limitations imposed by different
-versions of the netCDF standard.
-<acronym><acronymword>NCO</acronymword></acronym> and netCDF automatically attempt to configure <acronym><acronymword>LFS</acronymword></acronym> at
-build time.
-</para>
-<html endspaces=" ">
-<a name="x"></a> <!&textndash; http://nco.sf.net/nco.html#x &textndash;>
-<a name="grp"></a> <!&textndash; http://nco.sf.net/nco.html#grp &textndash;>
-<a name="var"></a> <!&textndash; http://nco.sf.net/nco.html#var &textndash;>
-<a name="xcl"></a> <!&textndash; http://nco.sf.net/nco.html#xcl &textndash;>
-<a name="sbs"></a> <!&textndash; http://nco.sf.net/nco.html#sbs &textndash;>
-<a name="subset"></a> <!&textndash; http://nco.sf.net/nco.html#subset &textndash;>
-</html>
-</section>
-<node name="Subsetting-Files" spaces=" "><nodename>Subsetting Files</nodename><nodenext spaces=" ">Subsetting Coordinate Variables</nodenext><nodeprev spaces=" ">Large File Support</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Subsetting Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="492">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="493">union</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="494">intersection</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="495">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="496">extraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="497"><code>-v <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="498"><code>--variable <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="499"><code>-g <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="500"><code>--grp <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="501"><code>--group <var>grp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="502"><code>-x</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="503"><code>--exclude</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="504"><code>--xcl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="505"><code>--unn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="506"><code>--union</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="507"><code>--gxvx</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="508"><code>--grp_xtr_var_xcl</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Options <code>-g <var>grp</var></code>&linebreak;
-Availability: <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-g</samp>&linebreak;
-Long options: <samp>--grp</samp> and <samp>--group</samp>&linebreak;
-Options <code>-v <var>var</var></code> and <code>-x</code>&linebreak;
-Availability: (<command>ncap2</command>), <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-v</samp>, <samp>-x</samp>&linebreak;
-Long options: <samp>--variable</samp>, <samp>--exclude</samp> or <samp>--xcl</samp>&linebreak;
-Options <code>--unn</code>&linebreak;
-Availability: <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: &linebreak;
-Long options: <samp>--unn</samp> and <samp>--union</samp>&linebreak;
-Options <code>--grp_xtr_var_xcl</code>&linebreak;
-Availability: <command>ncks</command>&linebreak;
-Short options: &linebreak;
-Long options: <samp>--gxvx</samp> and <samp>--grp_xtr_var_xcl</samp>&linebreak;
-</para></cartouche>
-<para>Subsetting variables refers to explicitly specifying variables and
-groups to be included or excluded from operator actions.
-Subsetting is controlled by the <samp>-v <var>var</var>[,&dots;]</samp> and
-<samp>-x</samp> options for directly specifying variables.
-Specifying groups, whether in addition to or instead of variables,
-is quite similar and is controlled by the <samp>-g <var>grp</var>[,&dots;]</samp>
-and <samp>-x</samp> options.
-<w>A list</w> of variables or groups to extract is specified following the
-<samp>-v</samp> and <samp>-g</samp> options, e.g., <samp>-v time,lat,lon</samp> or
-<samp>-g grp1,grp2</samp>.
-Both options may be specified simultaneously and <acronym><acronymword>NCO</acronymword></acronym> will
-extract the intersection of the lists, i.e., only variables of the
-specified names found in groups of the specified names.
-The <samp>--unn</samp> option causes <acronym><acronymword>NCO</acronymword></acronym> to extract the
-union, rather than the intersection, of the specified groups and
-variables.
-Not using the <samp>-v</samp> or <samp>-g</samp> option is equivalent to specifying
-all variables or groupp, respectively.
-The <samp>-x</samp> option causes the list of variables specified with
-<samp>-v</samp> to be <emph>excluded</emph> rather than <emph>extracted</emph>.
-Thus <samp>-x</samp> saves typing when you only want to extract fewer than
-half of the variables in a file.
-</para>
-<para>Variables or groups explicitly specified for extraction with
-<samp>-v <var>var</var>[,&dots;]</samp> or <samp>-g <var>grp</var>[,&dots;]</samp>
-<emph>must</emph> be present in the input file or an error will result.
-Variables explicitly specified for <emph>exclusion</emph> with
-<samp>-x -v <var>var</var>[,&dots;]</samp> need not be present in the input
-file.
-To accord with the sophistication of the underlying hierarchy,
-group subsetting is controlled by a few powerful yet subtle syntactical
-distinctions.
-When learning this syntax it is helpful to keep in mind the similarity
-between group hierarchies and directory structures.
-</para>
-<html endspaces=" ">
-<a name="gxvx"></a> <!&textndash; http://nco.sf.net/nco.html#gxvx &textndash;>
-<a name="grp_xtr_var_xcl"></a> <!&textndash; http://nco.sf.net/nco.html#grp_xtr_var_xcl &textndash;>
-</html>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> 4.4.4 (June, 2014), <command>ncks</command> (alone) supports
-an option to include specified groups yet exclude specified variables.
-The <samp>--grp_xtr_var_xcl</samp> switch (with long option equivalent
-<samp>--gxvx</samp>) extracts all contents of groups given as arguments to
-<samp>-g <var>grp</var>[,&dots;]</samp>, except for variables given as arguments
-to <samp>-v <var>var</var>[,&dots;]</samp>.
-Use this when one or a few variables in hierarchical files are not to be
-extracted, and all other variables are.
-This is useful when coercing netCDF4 files into netCDF3 files such as
-with converting, flattening, or dismembering files
-(see <ref label="Flattening-Groups"><xrefnodename>Flattening Groups</xrefnodename></ref>).
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --grp_xtr_var_xcl -g g1 -v v1 # Extract all of group g1 except v1
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="509"><command>mv</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="510"><command>cp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="511">recursion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="512">recursive</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="513">anchor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="514">anchoring</indexterm></cindex>
-<html endspaces=" ">
-<a name="rcr"></a> <!&textndash; http://nco.sf.net/nco.html#rcr &textndash;>
-<a name="recursion"></a> <!&textndash; http://nco.sf.net/nco.html#recursion &textndash;>
-<a name="recursive"></a> <!&textndash; http://nco.sf.net/nco.html#recursive &textndash;>
-<a name="ncr"></a> <!&textndash; http://nco.sf.net/nco.html#ncr &textndash;>
-<a name="anchor"></a> <!&textndash; http://nco.sf.net/nco.html#anchor &textndash;>
-<a name="anchoring"></a> <!&textndash; http://nco.sf.net/nco.html#anchoring &textndash;>
-</html>
-<para>Two properties of subsetting, recursion and anchoring, are best
-illustrated by reminding the user of their <acronym><acronymword>UNIX</acronymword></acronym> equivalents.
-The <acronym><acronymword>UNIX</acronymword></acronym> command <command>mv src dst</command> moves <file>src</file>
-<emph>and all its subdirectories</emph> (and all their subdirectories etc.)
-to <file>dst</file>.
-In other words <command>mv</command> is, by default, <emph>recursive</emph>.
-In contrast, the <acronym><acronymword>UNIX</acronymword></acronym> command <command>cp src dst</command> moves
-<file>src</file>, and only <file>src</file>, to <file>dst</file>,
-If <file>src</file> is a directory, not a file, then that command fails.
-One must explicitly request to copy directories recursively, i.e.,
-with <command>cp -r src dst</command>.
-In <acronym><acronymword>NCO</acronymword></acronym> recursive extraction (and copying) of groups is the
-default (like with <command>mv</command>, not with <command>cp</command>).
-Recursion is turned off by appending a trailing slash to the path.
-</para>
-<para>These <acronym><acronymword>UNIX</acronymword></acronym> commands also illustrate a property we call
-<emph>anchoring</emph>.
-The command <command>mv src dst</command> moves (recursively) the source
-directory <file>src</file> to the destination directory <file>dst</file>.
-If <file>src</file> begins with the slash character then the specified path is
-relative to the root directory, otherwise the path is relative to the
-current working directory.
-In other words, an initial slash character anchors the subsequent path
-to the root directory.
-In <acronym><acronymword>NCO</acronymword></acronym> an initial slash anchors the path at the root group.
-Paths that begin and end with slash characters (e.g., <file>//</file>,
-<file>/g1/</file>, and <file>/g1/g2/</file>) are both anchored and non-recursive.
-</para>
-<para>Consider the following commands, all of which may be assumed to end with
-<samp>in.nc out.nc</samp>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -g g1 # Extract, recursively, all groups with a g1 component
-ncks -g g1/ # Extract, non-recursively, all groups terminating in g1
-ncks -g /g1 # Extract, recursively, root group g1
-ncks -g /g1/ # Extract, non-recursively root group g1
-ncks -g // # Extract, non-recursively the root group
-</pre></example>
-<para>The first command is probably the most useful and common.
-It would extract these groups, if present, and all their direct
-ancestors and children:
-<file>/g1</file>, <file>/g2/g1</file>, and <file>/g3/g1/g2</file>.
-In other words, the simplest form of <samp>-g grp</samp> grabs all groups that
-(and their direct ancestors and children, recursively) that have
-<file>grp</file> as a complete component of their path.
-A simple string match is insufficient, <var>grp</var> must be a complete
-component (i.e., group name) in the path.
-The option <samp>-g g1</samp> would not extract these groups because <file>g1</file>
-is not a complete component of the path: <file>/g12</file>, <file>/fg1</file>, and
-<file>/g1g1</file>.
-The second command above shows how a terminating slash character
-<kbd>/</kbd> cancels the recursive copying of groups.
-An argument to <samp>-g</samp> which terminates with a slash character
-extracts the group and its direct ancestors, but none of its children.
-The third command above shows how an initial slash character <kbd>/</kbd>
-anchors the argument to the root group.
-The third command would not extract the group <file>/g2/g1</file> because
-the <file>g1</file> group is not at the root level, but it would extract,
-any group <file>/g1</file> at the root level and all its children,
-recursively.
-The fourth command is the non-recursive version of the third command.
-The fifth command is a special case of the fourth command.
-</para>
-<html endspaces=" ">
-<a name="unn"></a> <!&textndash; http://nco.sf.net/nco.html#unn &textndash;>
-<a name="nsx"></a> <!&textndash; http://nco.sf.net/nco.html#nsx &textndash;>
-<a name="union"></a> <!&textndash; http://nco.sf.net/nco.html#union &textndash;>
-<a name="intersection"></a> <!&textndash; http://nco.sf.net/nco.html#intersection &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="515">union</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="516">intersection</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="517"><code>--unn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="518"><code>--union</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="519"><code>--nsx</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="520"><code>--intersection</code></indexterm></cindex>
-<para>As mentioned above, both <samp>-v</samp> and <samp>-g</samp> options may be
-specified simultaneously and <acronym><acronymword>NCO</acronymword></acronym> will, by default, extract the
-intersection of the lists, i.e., the specified variables found in the
-specified groups
-<footnote spaces="\n"><para>Intersection-mode can also be explicitly invoked with the <samp>--nsx</samp>
-or <samp>--intersection</samp> switches.
-These switches are supplied for clarity and consistency and do
-absolutely nothing since intersection-mode is the default.</para></footnote>.
-The <samp>--unn</samp> option causes <acronym><acronymword>NCO</acronymword></acronym> to extract the
-union, rather than the intersection, of the specified groups and
-variables.
-Consider the following commands (which may be assumed to end with
-<samp>in.nc out.nc</samp>):
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Intersection-mode subsetting (default)
-ncks -g g1 -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1
-ncks -g /g1 -v v1 # Yes: /g1/v1, /g1/g2/v1. No: /v1, /g2/v1, /g2/g1/v1
-ncks -g g1/ -v v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
-ncks -v g1/v1 # Yes: /g1/v1, /g2/g1/v1. No: /v1, /g2/v1, /g1/g2/v1
-ncks -g /g1/ -v v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
-ncks -v /g1/v1 # Yes: /g1/v1. No: /g2/g1/v1, /v1, /g2/v1 ...
-
-# Union-mode subsetting (invoke with --unn or --union)
-ncks -g g1 -v v1 --unn # All variables in g1 or progeny, or named v1
-ncks -g /g1 -v v1 --unn # All variables in /g1 or progeny, or named v1
-ncks -g g1/ -v v1 --unn # All variables in g1 or named v1
-ncks -g /g1/ -v v1 --unn # All variables in /g1 or named v1
-</pre></example>
-<para>The first command (<samp>-g g1 -v v1</samp>) extracts the variable <file>v1</file>
-from any group named <file>g1</file> or descendent <file>g1</file>.
-The second command extracts <file>v1</file> from any root group
-named <file>g1</file> and any descendent groups as well.
-The third and fourth commands are equivalent ways of extracting
-<file>v1</file> only from the root group named <file>g1</file> (not its
-descendents).
-The fifth and sixth commands are equivalent ways of extracting the
-variable <file>v1</file> only from the root group named <file>g1</file>.
-Subsetting in union-mode (with <samp>--unn</samp>) causes all variables to be
-extracted which meet either one or both of the specifications of the
-variable and group specifications.
-Union-mode subsetting is simply the logical &textldquo;OR&textrdquo; of intersection-mode
-subsetting.
-As discussed below, the group and variable specifications may be comma
-separated lists of regular expressions for added control over
-subsetting.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="521">memory requirements</indexterm></cindex>
-<para>Remember, if averaging or concatenating large files stresses your
-systems memory or disk resources, then the easiest solution is often to
-subset (with <samp>-g</samp> and/or <samp>-v</samp>) to retain only the most
-important variables (<pxref label="Memory-Requirements"><xrefnodename>Memory Requirements</xrefnodename></pxref>).
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks in.nc out.nc # Extract all groups and variables
-ncks -v scl # Extract variable scl from all groups
-ncks -g g1 # Extract group g1 and descendents
-ncks -x -g g1 # Extract all groups except g1 and descendents
-ncks -g g2,g3 -v scl # Extract scl from groups g2 and g3
-</pre></example>
-<para>Overwriting and appending work as expected:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Replace scl in group g2 in out.nc with scl from group g2 from in.nc
-ncks -A -g g2 -v scl in.nc out.nc
-</pre></example>
-
-<para>Due to its special capabilities, <command>ncap2</command> interprets the
-<samp>-v</samp> switch differently
-(<pxref label="ncap2-netCDF-Arithmetic-Processor"><xrefnodename>ncap2 netCDF Arithmetic Processor</xrefnodename></pxref>).
-For <command>ncap2</command>, the <samp>-v</samp> switch takes no arguments and
-indicates that <emph>only</emph> user-defined variables should be output.
-<command>ncap2</command> neither accepts nor understands the <var>-x</var> and
-<var>-g</var> switches.
-</para>
-<html endspaces=" ">
-<a name="rx"></a> <!&textndash; http://nco.sf.net/nco.html#rx &textndash;>
-<a name="wildcarding"></a> <!&textndash; http://nco.sf.net/nco.html#wildcarding &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="522">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="523">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="524">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="525">wildcards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="526"><command>grep -E</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="527"><command>egrep</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="528"><command>ncatted</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="529"><acronym><acronymword>GNU</acronymword></acronym></indexterm></cindex>
-<para>Regular expressions the syntax that <acronym><acronymword>NCO</acronymword></acronym> use pattern-match
-object names in netCDF file against user requests.
-The user can select all variables beginning with the string <samp>DST</samp>
-from an input file by supplying the regular expression <samp>^DST</samp> to
-the <samp>-v</samp> switch, i.e., <samp>-v '^DST'</samp>.
-The meta-characters used to express pattern matching operations are
-<samp>^$+?.*[]{}|</samp>.
-If the regular expression pattern matches <emph>any</emph> part of a variable
-name then that variable is selected.
-This capability is also called <dfn>wildcarding</dfn>, and is very useful for
-sub-setting large data files.
-</para>
-<para>Extended regular expressions are defined by the <acronym><acronymword>POSIX</acronymword></acronym>
-<command>grep -E</command> (aka <command>egrep</command>) command.
-As of <acronym><acronymword>NCO</acronymword></acronym> 2.8.1 (August, 2003), variable name arguments
-to the <samp>-v</samp> switch may contain <dfn>extended regular expressions</dfn>.
-As of <acronym><acronymword>NCO</acronymword></acronym> 3.9.6 (January, 2009), variable names arguments
-to <command>ncatted</command> may contain <dfn>extended regular expressions</dfn>.
-As of <acronym><acronymword>NCO</acronymword></acronym> 4.2.4 (November, 2012), group name arguments
-to the <samp>-g</samp> switch may contain <dfn>extended regular expressions</dfn>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="530"><acronym><acronymword>POSIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="531"><code>regex</code></indexterm></cindex>
-<para>Because of its wide availability, <acronym><acronymword>NCO</acronymword></acronym> uses the <acronym><acronymword>POSIX</acronymword></acronym>
-regular expression library <code>regex</code>.
-Regular expressions of arbitary complexity may be used.
-Since netCDF variable names are relatively simple constructs, only a
-few varieties of variable wildcards are likely to be useful.
-For convenience, we define the most useful pattern matching operators
-here:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="532"><code>.</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="533"><code>$</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="534"><code>^</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="535"><code>?</code> (filename expansion)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="536"><code>*</code> (filename expansion)</indexterm></cindex>
-</para><table commandarg="samp" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="samp">^</itemformat></item>
-</tableterm><tableitem><para>Matches the beginning of a string
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">$</itemformat></item>
-</tableterm><tableitem><para>Matches the end of a string
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">.</itemformat></item>
-</tableterm><tableitem><para>Matches any single character
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>The most useful repetition and combination operators are
-<cindex index="cp" spaces=" "><indexterm index="cp" number="537"><code>?</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="538"><code>*</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="539"><code>+</code> (wildcard character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="540"><code>|</code> (wildcard character)</indexterm></cindex>
-</para><table commandarg="samp" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="samp">?</itemformat></item>
-</tableterm><tableitem><para>The preceding regular expression is optional and matched at most once
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">*</itemformat></item>
-</tableterm><tableitem><para>The preceding regular expression will be matched zero or more times
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">+</itemformat></item>
-</tableterm><tableitem><para>The preceding regular expression will be matched one or more times
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">|</itemformat></item>
-</tableterm><tableitem><para>The preceding regular expression will be joined to the following regular
-expression.
-The resulting regular expression matches any string matching either
-subexpression.
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-
-<para>To illustrate the use of these operators in extracting variables
-and groups, consider file <file>in_grp.nc</file> with groups
-<code>g0</code>&textndash;<code>g9</code>, and subgroups <code>s0</code>&textndash;<code>s9</code>, in each of
-those groups, and file <file>in.nc</file> with variables <code>Q</code>,
-<code>Q01</code>&textndash;<code>Q99</code>, <code>Q100</code>, <code>QAA</code>&textndash;<code>QZZ</code>,
-<code>Q_H2O</code>, <code>X_H2O</code>, <code>Q_CO2</code>, <code>X_CO2</code>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncks -v '.+' in.nc # All variables (default)
-ncks -v 'Q.?' in.nc # Variables that contain Q
-ncks -v '^Q.?' in.nc # Variables that start with Q
-ncks -v '^Q+.?.' in.nc # Q, Q0--Q9, Q01--Q99, QAA--QZZ, etc.
-ncks -v '^Q..' in.nc # Q01--Q99, QAA--QZZ, etc.
-ncks -v '^Q[0-9][0-9]' in.nc # Q01--Q99, Q100
-ncks -v '^Q[[:digit:]]{2}' in.nc # Q01--Q99
-ncks -v 'H2O$' in.nc # Q_H2O, X_H2O
-ncks -v 'H2O$|CO2$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
-ncks -v '^Q[0-9][0-9]$' in.nc # Q01--Q99
-ncks -v '^Q[0-6][0-9]|7[0-3]' in.nc # Q01--Q73, Q100
-ncks -v '(Q[0-6][0-9]|7[0-3])$' in.nc # Q01--Q73
-ncks -v '^[a-z]_[a-z]{3}$' in.nc # Q_H2O, X_H2O, Q_CO2, X_CO2
-ncks -g 'g.' in_grp.nc # 10 Groups g0-g9
-ncks -g 's.' in_grp.nc # 100 sub-groups g0/s0, g0/s1, ... g9/s9
-ncks -g 'g.' -v 'v.' in_grp.nc # All variables 'v.' in groups 'g.'
-</verbatim>
-</example>
-<para>Beware&textmdash;two of the most frequently used repetition pattern matching
-operators, <samp>*</samp> and <samp>?</samp>, are also valid pattern matching
-operators for filename expansion (globbing) at the shell-level.
-Confusingly, their meanings in extended regular expressions and in
-shell-level filename expansion are significantly different.
-In an extended regular expression, <samp>*</samp> matches zero or more
-occurences of the preceding regular expression.
-Thus <samp>Q*</samp> selects all variables, and <samp>Q+.*</samp> selects all
-variables containing <samp>Q</samp> (the <samp>+</samp> ensures the preceding item
-matches at least once).
-To match zero or one occurence of the preceding regular expression,
-use <samp>?</samp>.
-Documentation for the <acronym><acronymword>UNIX</acronymword></acronym> <command>egrep</command> command details the
-extended regular expressions which <acronym><acronymword>NCO</acronymword></acronym> supports.
-</para>
-<html endspaces=" ">
-<a name="globbing"></a> <!&textndash; http://nco.sf.net/nco.html#globbing &textndash;>
-<a name="glb"></a> <!&textndash; http://nco.sf.net/nco.html#glb &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="541">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="542">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="543"><command>bash</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="544"><command>csh</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="545">quotes</indexterm></cindex>
-<para>One must be careful to protect any special characters in the regular
-expression specification from being interpreted (globbed) by the shell.
-This is accomplish by enclosing special characters within single or
-double quotes
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -v Q?? in.nc out.nc # Error: Shell attempts to glob wildcards
-ncra -v '^Q+..' in.nc out.nc # Correct: NCO interprets wildcards
-ncra -v '^Q+..' in*.nc out.nc # Correct: NCO interprets, Shell globs
-</pre></example>
-<para>The final example shows that commands may use a combination of variable
-wildcarding and shell filename expansion (globbing).
-For globbing, <samp>*</samp> and <samp>?</samp> <emph>have nothing to do</emph> with the
-preceding regular expression!
-In shell-level filename expansion, <samp>*</samp> matches any string,
-including the null string and <samp>?</samp> matches any single character.
-Documentation for <command>bash</command> and <command>csh</command> describe the rules of
-filename expansion (globbing).
-</para>
-<html endspaces=" ">
-<a name="crd"></a> <!&textndash; http://nco.sf.net/nco.html#crd &textndash;>
-<a name="-C"></a> <!&textndash; http://nco.sf.net/nco.html#-C &textndash;>
-<a name="-c"></a> <!&textndash; http://nco.sf.net/nco.html#-c &textndash;>
-</html>
-</section>
-<node name="Subsetting-Coordinate-Variables" spaces=" "><nodename>Subsetting Coordinate Variables</nodename><nodenext spaces=" ">Group Path Editing</nodenext><nodeprev spaces=" ">Subsetting Files</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Subsetting Coordinate Variables</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="546">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="547"><code>-C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="548"><code>-c</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="549"><code>--no-coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="550"><code>--no-crd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="551"><code>--coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="552"><code>--crd</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-C</samp>, <samp>-c</samp>&linebreak;
-Long options: <samp>--no-coords</samp>, <samp>--no-crd</samp>, <samp>--crd</samp>, <samp>--coords</samp>&linebreak;
-</para></cartouche>
-<para>By default, coordinates variables associated with any variable appearing
-in the <var>input-file</var> will be placed in the <var>output-file</var>, even
-if they are not explicitly specified, e.g., with the <samp>-v</samp> switch.
-Thus variables with a latitude coordinate <code>lat</code> always carry the
-values of <code>lat</code> with them into the <var>output-file</var>.
-This feature can be disabled with <samp>-C</samp>, which causes <acronym><acronymword>NCO</acronymword></acronym>
-to not automatically add coordinates to the variables appearing in the
-<var>output-file</var>.
-However, using <samp>-C</samp> does not preclude the user from including some
-coordinates in the output files simply by explicitly selecting the
-coordinates with the <var>-v</var> option.
-The <samp>-c</samp> option, on the other hand, is a shorthand way of
-automatically specifying that <emph>all</emph> coordinate variables in the
-<var>input-files</var> should appear in the <var>output-file</var>.
-Thus <samp>-c</samp> allows the user to select all the coordinate variables
-without having to know their names.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="553"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.5 (July, 2014)
-both <samp>-c</samp> and <samp>-C</samp> honor the <acronym><acronymword>CF</acronymword></acronym> <code>ancillary_variables</code>
-convention described in <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref>.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.0.8 (April, 2011)
-both <samp>-c</samp> and <samp>-C</samp> honor the <acronym><acronymword>CF</acronymword></acronym> <code>bounds</code>
-convention described in <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref>.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 3.9.6 (January, 2009)
-both <samp>-c</samp> and <samp>-C</samp> honor the <acronym><acronymword>CF</acronymword></acronym> <code>coordinates</code>
-convention described in <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="gpe"></a> <!&textndash; http://nco.sf.net/nco.html#gpe &textndash;>
-</html>
-</section>
-<node name="Group-Path-Editing" spaces=" "><nodename>Group Path Editing</nodename><nodenext spaces=" ">C and Fortran Index Conventions</nodenext><nodeprev spaces=" ">Subsetting Coordinate Variables</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Group Path Editing</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="554"><code>-G <var>gpe_dsc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="555"><code>--gpe <var>gpe_dsc</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Options <code>-G <var>gpe_dsc</var></code>&linebreak;
-Availability: <command>ncbo</command>, <command>ncecat</command>, <command>nces</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-G</samp>&linebreak;
-Long options: <samp>--gpe</samp>&linebreak;
-</para></cartouche>
-
-<para><dfn>Group Path Editing</dfn>, or <acronym><acronymword>GPE</acronymword></acronym>, allows the user to
-restructure (i.e., add, remove, and rename groups) in the output file
-relative to the input file based on the instructions they provide.
-As of <acronym><acronymword>NCO</acronymword></acronym> 4.2.3 (November, 2012), all operators that accept
-netCDF4 files with groups accept the <samp>-G</samp> switch, or its
-long-option equivalent <samp>--gpe</samp>.
-To master <acronym><acronymword>GPE</acronymword></acronym> one must understand the meaning of the
-required <var>gpe_dsc</var> structure/argument that specifies the
-transformation of input-to-output group paths.
-</para>
-<para>Each <var>gpe_dsc</var> contains up to three elements (two are optional) in
-the following order:&linebreak;
-<var>gpe_dsc</var> = <var>grp_pth</var>:<var>lvl_nbr</var> or <var>grp_pth</var>&arobase;<var>lvl_nbr</var>
-</para>
-<table commandarg="var" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="var">grp_pth</itemformat></item>
-</tableterm><tableitem><para>Group Path.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="556">group path</indexterm></cindex>
-This (optional) component specifies the output group path that should be
-appended after any editing (i.e., deletion or truncation) of the input
-path is performed.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">lvl_nbr</itemformat></item>
-</tableterm><tableitem><para>The number of levels to delete (from the head) or truncate (from the
-tail) of the input path.
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>If both components of the argument are present, then a single character,
-either the colon or at-sign (<code>:</code> or <code>&arobase;</code>), must separate them.
-If only <var>grp_pth</var> is specifed, the separator character may be
-omitted, e.g., <samp>-G g1</samp>.
-If only <var>lvl_nbr</var> is specifed, the separator character is still
-required to indicate it is a <var>lvl_nbr</var> arugment and not a
-<var>grp_pth</var>, e.g., <samp>-G :-1</samp> or <samp>-G &arobase;1</samp>.
-</para>
-<para>If the at-sign separator character <code>&arobase;</code> is used instead of the colon
-separator character <code>:</code>, then the following <var>lvl_nbr</var> arugment
-must be positive and it will be assumed to refer to Truncation-Mode.
-Hence, <samp>-G :-1</samp> is the same as <samp>-G &arobase;1</samp>.
-This is simply a way of making the <var>lvl_nbr</var> argument
-positive-definite.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Flattening Groups</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Moving Groups</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Dismembering Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Checking CF-compliance</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-<node name="Flattening-Groups" spaces=" "><nodename>Flattening Groups</nodename><nodenext spaces=" ">Moving Groups</nodenext><nodeprev spaces=" ">Group Path Editing</nodeprev><nodeup spaces=" ">Group Path Editing</nodeup></node>
-<subsection spaces=" "><sectiontitle>Deletion, Truncation, and Flattening of Groups</sectiontitle>
-<html endspaces=" ">
-<a name="flatten"></a> <!&textndash; http://nco.sf.net/nco.html#flatten &textndash;>
-<a name="delete"></a> <!&textndash; http://nco.sf.net/nco.html#delete &textndash;>
-<a name="truncate"></a> <!&textndash; http://nco.sf.net/nco.html#truncate &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="557"><code>&arobase;</code> (separator character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="558"><code>:</code> (separator character)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="559">delete (groups)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="560">truncate (groups)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="561">flatten (groups)</indexterm></cindex>
-<para><acronym><acronymword>GPE</acronymword></acronym> has three editing modes: Delete, Truncate, and
-Flatten.
-Select one of <acronym><acronymword>GPE</acronymword></acronym>&textrsquo;s three editing modes by supplying a
-<var>lvl_nbr</var> that is positive, negative, or zero for Delete-,
-Truncate- and Flatten-mode, respectively.
-</para>
-<para>In Delete-mode, <var>lvl_nbr</var> is a positive integer which specifies
-the maximum number of group path components (i.e., groups) that
-<acronym><acronymword>GPE</acronymword></acronym> will try to delete from the head of <var>grp_pth</var>.
-For example <math><var>lvl_nbr</var> = 3</math> changes the input path
-<file>/g1/g2/g3/g4/g5</file> to the output path <file>/g4/g5</file>.
-Input paths with <var>lvl_nbr</var> or fewer components (groups)
-are completely erased and the output path commences from the root
-level.
-</para>
-<para>In other words, <acronym><acronymword>GPE</acronymword></acronym> is tolerant of specifying too many group
-components to delete.
-It deletes as many as possible, without complaint, and then begins to
-flatten the file (which will fail if namespace conflicts arise).
-</para>
-<para>In Truncate-mode, <var>lvl_nbr</var> is a negative integer which specifies
-the maximum number of group path components (i.e., groups) that
-<acronym><acronymword>GPE</acronymword></acronym> will try to truncate from the tail of <var>grp_pth</var>.
-For example <math><var>lvl_nbr</var> = -3</math> changes the input path
-<file>/g1/g2/g3/g4/g5</file> to the output path <file>/g1/g2</file>.
-Input paths with <var>lvl_nbr</var> or fewer components (groups)
-are completely erased and the output path commences from the root
-level.
-</para>
-<para>In Flatten-mode, indicated by the separator character alone
-or with <math><var>lvl_nbr</var> = 0</math>, <acronym><acronymword>GPE</acronymword></acronym> removes the entire group
-path from the input file and constructs the output path beginning at the
-root level.
-For example <code>-G :0</code> and <code>-G :</code> are identical and change the
-input path <file>/g1/g2/g3/g4/g5</file> to the output path <file>/</file> whereas
-<code>-G g1:0</code> and <code>-G g1:</code> are identical and result in the output
-path <file>/g1</file> for all variables.
-</para>
-<para>Subsequent to the alteration of the input path by the specified
-editing mode, if any, <acronym><acronymword>GPE</acronymword></acronym> prepends (in Delete Mode)
-or Appends (in Truncate-mode) any specifed <var>grp_pth</var> to the output
-path.
-For example <code>-G g2</code> changes the input paths <file>/</file> and <file>/g1</file>
-to <file>/g2</file> and <file>/g1/g2</file>, respectively.
-Likewise, <code>-G g2/g3</code> changes the input paths <file>/</file> and <file>/g1</file>
-to <file>/g2/g3</file> and <file>/g1/g2/g3</file>, respectively.
-When <var>grp_pth</var> and <var>lvl_nbr</var> are both specified, the editing
-actions are taken in sequence so that, e.g., <code>-G g1/g2:2</code>
-changes the input paths <file>/</file> and <file>/h1/h2/h3/h4</file>
-to <file>/g1/g2</file> and <file>/g1/g2/h3/h4</file>, respectively.
-Likewise, <code>-G g1/g2:-2</code> changes the input paths <file>/</file> and
-<file>/h1/h2/h3/h4</file> to <file>/g1/g2</file> and <file>/h1/h2/g1/g2</file>,
-respectively.
-</para>
-<para>Combining <acronym><acronymword>GPE</acronymword></acronym> with subsetting (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>)
-yields powerful control over the extracted (or excluded) variables and
-groups and their placement in the output file as shown by the following
-commands.
-All commands below may be assumed to end with <samp>in.nc out.nc</samp>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Prepending paths without editing:
-ncks # /g?/v? -> /g?/v?
-ncks -v v1 # /g?/v1 -> /g?/v1
-ncks -g g1 # /g1/v? -> /g1/v?
-ncks -G o1 # /g?/v? -> /o1/g?/v?
-ncks -G o1 -g g1 # /g1/v? -> /o1/g1/v?
-ncks -g g1 -v v1 # /g1/v1 -> /g1/v1
-ncks -G o1 -v v1 # /g?/v1 -> /o1/g?/v1
-ncks -G o1 -g g1 -v v1 # /g1/v1 -> /o1/g1/v1
-ncks -G g1 -g / -v v1 # /v1 -> /g1/v1
-ncks -G g1/g2 -v v1 # /g?/v1 -> /g1/g2/g?/v1
-# Delete-mode: Delete from and Prepend to path head
-# Syntax: -G [ppn]:lvl_nbr = # of levels to delete
-ncks -G :1 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G :1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g1/v1
-ncks -G :2 -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
-ncks -G :2 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G g2:1 -g g1 -v v1 # /g1/v1 -> /g2/v1
-ncks -G g2:2 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
-ncks -G g2:1 -g / -v v1 # /v1 -> /g2/v1
-ncks -G g2:1 -v v1 # /v1 -> /g2/v1
-ncks -G g2:1 -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/g1/v1
-# Flatten-mode: Remove all input path components
-# Syntax: -G [apn]: colon without numerical argument
-ncks -G : -v v1 # /g?/v1 -> /v1
-ncks -G : -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G : -g g1/g1 -v v1 # /g1/g1/v1 -> /v1
-ncks -G g2: -v v1 # /g?/v1 -> /g2/v1
-ncks -G g2: # /g?/v? -> /g2/v?
-ncks -G g2: -g g1/g1 -v v1 # /g1/g1/v1 -> /g2/v1
-# Truncate-mode: Truncate from and Append to path tail
-# Syntax: -G [apn]:-lvl_nbr = # of levels to truncate
-# NB: -G [apn]:-lvl_nbr is equivalent to -G [apn]@lvl_nbr
-ncks -G :-1 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G :-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/v1
-ncks -G :-2 -g g1/g2 -v v1 # /g1/g2/v1 -> /v1
-ncks -G :-2 -g g1 -v v1 # /g1/v1 -> /v1
-ncks -G g2:-1 -v v1 # /g?/v1 -> /g2/v1
-ncks -G g2:-1 -g g1 -v v1 # /g1/v1 -> /g2/v1
-ncks -G g1:-1 -g g1/g2 -v v1 # /g1/g2/v1 -> /g1/g1/v1
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="mv"></a> <!&textndash; http://nco.sf.net/nco.html#mv &textndash;>
-<a name="move"></a> <!&textndash; http://nco.sf.net/nco.html#move &textndash;>
-</html>
-</subsection>
-<node name="Moving-Groups" spaces=" "><nodename>Moving Groups</nodename><nodenext spaces=" ">Dismembering Files</nodenext><nodeprev spaces=" ">Flattening Groups</nodeprev><nodeup spaces=" ">Group Path Editing</nodeup></node>
-<subsection spaces=" "><sectiontitle>Moving Groups</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="562">move groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="563">groups, moving</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="564">rename groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="565">groups, renaming</indexterm></cindex>
-<para>Until fall 2013 (netCDF version 4.3.1-pre1), netCDF contained no library
-function for renaming groups, and therefore <command>ncrename</command> cannot
-rename groups.
-However, <acronym><acronymword>NCO</acronymword></acronym> built on earlier versions of netCDF than 4.3.1
-can use a <acronym><acronymword>GPE</acronymword></acronym>-based workaround mechanism to &textldquo;rename&textrdquo;
-groups.
-The <acronym><acronymword>GPE</acronymword></acronym> mechanism actually <emph>moves</emph> (i.e., copies to a new
-location) groups, a more arduous procedure than simply renaming them.
-<acronym><acronymword>GPE</acronymword></acronym> applies to all selected groups, so, in the general case,
-one must move only the desired group to a new file, and then merge that
-new file with the original to obtain a file where the desired group has
-been &textldquo;renamed&textrdquo; and all else is unchanged.
-Here is how to &textldquo;rename&textrdquo; group <file>/g4</file> to group <file>/f4</file> with
-<acronym><acronymword>GPE</acronymword></acronym> instead of <command>ncrename</command>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -O -G f4:1 -g g4 ~/nco/data/in_grp.nc ~/tmp.nc # Move /g4 to /f4
-ncks -O -x -g g4 ~/nco/data/in_grp.nc ~/out.nc # Excise /g4
-ncks -A ~/tmp.nc ~/out.nc # Add /f4 to new file
-</pre></example>
-<para>If the original group <file>g4</file> is not excised from <file>out.nc</file> (step
-two above), then the final output file would contain both <file>g4</file> and
-a copy named <file>f4</file>.
-Thus GPE can be used to both &textldquo;rename&textrdquo; and copy groups.
-The recommended way to rename groups when when netCDF version 4.3.1 is
-availale is to use <command>ncrename</command> (<pxref label="ncrename-netCDF-Renamer"><xrefnodename>ncrename netCDF Renamer</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="xmp_flt"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_flt &textndash;>
-</html>
-<para>One may wish to flatten hierarchical group files for many reasons.
-These include <w>1. Obtaining</w> flat netCDF3 files for use with tools
-that do not work with netCDF4 files, <w>2. Splitting</w> apart
-hierarchies to re-assemble into different hierarchies, and
-<w>3. Providing</w> a subset of a hierarchical file with the simplest
-possible storage structure.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /cesm to /
-</pre></example>
-<para>The <option>-3</option> switch
-<footnote><para>Note that the <option>-3</option> switch should appear <emph>after</emph> the
-<option>-G</option> and <option>-g</option> switches.
-This is due to an artifact of the <acronym><acronymword>GPE</acronymword></acronym> implementation which we
-wish to remove in the future.</para></footnote>
-specifies the output dataset should be in netCDF3
-format, the <option>-G :</option> option flattens all extracted groups, and the
-<option>-g cesm</option> option extracts only the <code>cesm</code> group and leaves
-all other groups (e.g., <code>ecmwf</code>, <code>giss</code>).
-</para>
-<html endspaces=" ">
-<a name="dismember"></a> <!&textndash; http://nco.sf.net/nco.html#dismember &textndash;>
-<a name="disaggregate"></a> <!&textndash; http://nco.sf.net/nco.html#disaggregate &textndash;>
-<a name="ncdismember"></a> <!&textndash; http://nco.sf.net/nco.html#ncdismember &textndash;>
-</html>
-</subsection>
-<node name="Dismembering-Files" spaces=" "><nodename>Dismembering Files</nodename><nodenext spaces=" ">Checking CF-compliance</nodenext><nodeprev spaces=" ">Moving Groups</nodeprev><nodeup spaces=" ">Group Path Editing</nodeup></node>
-<subsection spaces=" "><sectiontitle>Dismembering Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="566">disaggregate</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="567">dismember</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="5" mergedindex="cp">ncdismember</indexterm></findex>
-<para>Let us show how to completely disaggregate (or, more memorably)
-<emph>dismember</emph> a hierarchical dataset.
-For now we take this to mean: store each group as a standalone flat
-dataset in netCDF3 format.
-This can be accomplished by looping the previous example over all
-groups.
-This script <file>ncdismember</file> dismembers the input file <var>fl_in</var>
-specified in the first argument and places the resulting files in the
-directory <var>drc_out</var> specified by the second argument:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-cat > ~/ncdismember << 'EOF'
-# Purpose: Dismember netCDF4/HDF5 hierarchical files. CF-check them.
-# Place each input file group in separate netCDF3 output file
-# Described in NCO User Guide at http://nco.sf.net/nco.html#dismember
-# Requirements: NCO 4.3.x+, UNIX shell utilities awk, grep, sed
-# Optional: CFchecker command https://bitbucket.org/mde_/cfchecker
-
-# Usage:
-# ncdismember <fl_in> <drc_out> [flg_cf] [cf_vrs] [opt]
-# where fl_in is input file/URL to dismember, drc_out is output directory,
-# CF-compliance check is performed when optional third argument is 'cf',
-# Optional fourth argument cf_vrs is CF version to check
-# Optional fifth argument opt passes straight through to ncks
-# chmod a+x ~/sh/ncdismember
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp
-# ncdismember http://dust.ess.uci.edu/nco/mdl_1.nc /data/zender/nco/tmp
-# ncdismember http://thredds-test.ucar.edu/thredds/dodsC/testdods/foo.nc /data/zender/nco/tmp
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.3
-# ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf 1.5 --fix_rec_dmn=all
-
-# Command line argument defaults
-fl_in="${HOME}/nco/data/mdl_1.nc" # [sng] Input file to dismember/check
-drc_out="${DATA}/nco/tmp" # [sng] Output directory
-flg_cf='0' # [flg] Perform CF-compliance check
-cf_vrs='1.5' # [sng] Compliance-check this CF version (e.g., '1.5')
-opt='' # [flg] Additional ncks options (e.g., '--fix_rec_dmn=all')
-# Use single quotes to pass multiple arguments to opt=${5}
-# Otherwise arguments would be seen as ${5}, ${6}, ${7} ...
-
-# Command line argument option parsing
-if [ -n "${1}" ]; then fl_in=${1}; fi
-if [ -n "${2}" ]; then drc_out=${2}; fi
-if [ -n "${3}" ]; then flg_cf=${3}; fi
-if [ -n "${4}" ]; then cf_vrs=${4}; fi
-if [ -n "${5}" ]; then opt=${5}; fi
-
-# Prepare output directory
-echo "NCO dismembering file ${fl_in}"
-fl_stb=$(basename ${fl_in})
-drc_out=${drc_out}/${fl_stb}
-mkdir -p ${drc_out}
-cd ${drc_out}
-# Obtain group list
-grp_lst=`ncks --cdl -m ${fl_in} | grep '// group' | awk '{$1=$2=$3="";sub(/^ */,"",$0);print}'`
-IFS=$'\n' # Change Internal-Field-Separator from <Space><Tab><Newline> to <Newline>
-for grp_in in ${grp_lst} ; do
- # Replace slashes by dots for output group filenames
- grp_out=`echo ${grp_in} | sed 's/\///' | sed 's/\//./g'`
- if [ "${grp_out}" = '' ]; then grp_out='root' ; fi
- # Tell older NCO/netCDF if HDF4 with --hdf4 switch (signified by .hdf/.HDF suffix)
- hdf4=`echo ${fl_in} | awk '{if(match(tolower($1),".hdf$")) hdf4="--hdf4"; print hdf4}'`
- # Flatten to netCDF3, anchor, no history, no temporary file, padding, HDF4 flag, options
- cmd="ncks -O -3 -G : -g ${grp_in}/ -h --no_tmp_fl --hdr_pad=40 ${hdf4} ${opt} ${fl_in} ${drc_out}/${grp_out}.nc"
- # Use eval in case ${opt} contains multiple arguments separated by whitespace
- eval ${cmd}
- if [ ${flg_cf} = 'cf' ]; then
- # cfchecker needs Conventions <= 1.5
- no_bck_sls=`echo ${drc_out}/${grp_out} | sed 's/\\\ / /g'`
- ncatted -h -a Conventions,global,o,c,CF-${cf_vrs} ${no_bck_sls}.nc
- else # !flg_cf
- echo ${drc_out}/${grp_out}.nc
- fi # !flg_cf
-done
-if [ ${flg_cf} = 'cf' ]; then
- echo "CFchecker reports CF-compliance of each group in flat netCDF3 format"
- cfchecker -c ${cf_vrs} *.nc
-fi # !flg_cf
-EOF
-chmod 755 ~/ncdismember # Make command executable
-/bin/mv -f ~/ncdismember ~/sh # Store in location on $PATH, e.g., /usr/local/bin
-
-zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp
-NCO dismembering file /home/zender/nco/data/mdl_1.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.cesm_01.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.cesm_02.nc
-/data/zender/nco/tmp/mdl_1.nc/cesm.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_01.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.ecmwf_02.nc
-/data/zender/nco/tmp/mdl_1.nc/ecmwf.nc
-/data/zender/nco/tmp/mdl_1.nc/root.nc
-</verbatim>
-</example>
-<para>A (potentially more portable) binary executable could be written to
-dismember all groups with a single invocation, yet dismembering without
-loss of information is possible now with this simple script on all
-platforms with <acronym><acronymword>UNIX</acronymword></acronym>y utilities.
-Note that all dimensions inherited by groups in the input file are
-correctly placed by <command>ncdismember</command> into the flat files.
-Moreover, each output file preserves the group metadata of all ancestor
-groups, including the global metadata from the input file.
-As written, the script could fail on groups that contain advanced
-netCDF4 features because the user requests (with the <samp>-3</samp> switch)
-that output be netCDF3 classic format.
-However, <command>ncks</command> detects many format incompatibilities in advance
-and works around them.
-For example, <command>ncks</command> autoconverts netCDF4-only atomic-types (such
-as <code>NC_STRING</code> and <code>NC_UBYTE</code>) to corresponding netCDF3
-atomic types (<code>NC_CHAR</code> and <code>NC_SHORT</code>) when the output format
-is netCDF3.
-</para>
-</subsection>
-<node name="Checking-CF_002dcompliance" spaces=" "><nodename>Checking CF-compliance</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Dismembering Files</nodeprev><nodeup spaces=" ">Group Path Editing</nodeup></node>
-<subsection spaces=" "><sectiontitle>Checking CF-compliance</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="568"><acronym><acronymword>CF</acronymword></acronym> compliance checker</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="6" mergedindex="cp">cfchecker</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="7" mergedindex="cp">ncdismember</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="569">compliance checker</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="570">Martin Schultz</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="571">Michael Decker</indexterm></cindex>
-<para>One application of dismembering is to check the <acronym><acronymword>CF</acronymword></acronym>-compliance of each
-group in a file.
-When invoked with the optional third argumnt <samp>cf</samp>,
-<command>ncdismember</command> passes each file it generates to the freely
-available
-<footnote><para>CFchecker is developed by Michael Decker and Martin Schultz at
-Forschungszentrum J<accent type="uml" bracketed="off">u</accent>lich and distributed at
-<uref><urefurl>https://bitbucket.org/mde_/cfchecker</urefurl></uref>.</para></footnote>
-<command>cfchecker</command> command.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncdismember ~/nco/data/mdl_1.nc /data/zender/nco/tmp cf
-NCO dismembering file /home/zender/nco/data/mdl_1.nc
-CFchecker reports CF-compliance of each group in flat netCDF3 format
-WARNING: Using the default (non-CF) Udunits database
-cesm.cesm_01.nc:
-INFO: INIT: running CFchecker version 1.5.15
-INFO: INIT: checking compliance with convention CF-1.5
-INFO: INIT: using standard name table version: 25, last modified: 2013-07-05T05:40:30Z
-INFO: INIT: using area type table version: 2, date: 10 July 2013
-INFO: 2.4: no axis information found in dimension variables, not checking dimension order
-WARNING: 3: variable "tas1" contains neither long_name nor standard_name attribute
-WARNING: 3: variable "tas2" contains neither long_name nor standard_name attribute
-INFO: 3.1: variable "tas1" does not contain units attribute
-INFO: 3.1: variable "tas2" does not contain units attribute
---------------------------------------------------
-cesm.cesm_02.nc:
-...
-</verbatim>
-</example>
-<para>By default the <acronym><acronymword>CF</acronymword></acronym> version checked is determined automatically by
-<command>cfchecker</command>.
-The user can override this default by supplying a supported <acronym><acronymword>CF</acronymword></acronym> version,
-e.g., <samp>1.3</samp>, as an optional fourth argument to
-<command>ncdismember</command>.
-Current valid <acronym><acronymword>CF</acronymword></acronym> options are <samp>1.0</samp>, <samp>1.1</samp>,
-<samp>1.2</samp>, <samp>1.3</samp>, <samp>1.4</samp>, and <samp>1.5</samp>.
-</para>
-<html endspaces=" ">
-<a name="diwg"></a> <!&textndash; http://nco.sf.net/nco.html#diwg &textndash;>
-</html>
-<para>Our development and testing of <command>ncdismember</command> is funded by our
-involvement in <acronym><acronymword>NASA</acronymword></acronym>&textrsquo;s Dataset Interoperability Working Group
-(<uref><urefurl>https://wiki.earthdata.nasa.gov/display/ESDSWG/Dataset+Interoperability+Working+Group</urefurl><urefdesc spaces="\n">DIWG</urefdesc></uref>), though our interest extends beyond <acronym><acronymword>NASA</acronymword></acronym> datasets.
-Taken together, <acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s features (autoconversion to netCDF3
-atomic types, fixing multiple record dimensions, autosensing
-<acronym><acronymword>HDF4</acronymword></acronym> input, scoping rules for CF conventions) make
-<command>ncdismember</command> reliable and friendly for both dismembering
-hierarchical files and for <acronym><acronymword>CF</acronymword></acronym>-compliance checks.
-Most <acronym><acronymword>HDF4</acronymword></acronym> and <acronym><acronymword>HDF5</acronymword></acronym> datasets can be checked for
-<acronym><acronymword>CF</acronymword></acronym>-compliance with a one-line command.
-Example compliance checks of common <acronym><acronymword>NASA</acronymword></acronym> datasets are at
-<uref><urefurl>http://dust.ess.uci.edu/diwg</urefurl></uref>.
-Our long-term goal is to enrich the hierarchical data model with the
-expressivity and syntactic power of <acronym><acronymword>CF</acronymword></acronym> conventions.
-</para>
-<html endspaces=" ">
-<a name="daac"></a> <!&textndash; http://nco.sf.net/nco.html#daac &textndash;>
-</html>
-<para><acronym><acronymword>NASA</acronymword></acronym> asked the <acronym><acronymword>DIWG</acronymword></acronym> to prepare a one-page summary
-of the procedure necessary to check <acronym><acronymword>HDF</acronymword></acronym> files for
-<acronym><acronymword>CF</acronymword></acronym>-compliance:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-cat > ~/ncdismember.txt << 'EOF'
- Preparing an RPM-based OS to Test HDF & netCDF Files for CF-Compliance
-
-By Charlie Zender, UCI & NASA Dataset Interoperability Working Group (DIWG)
-
-Installation Summary:
-1. HDF4 [with internal netCDF support _disabled_]
-2. HDF5
-3. netCDF [with external HDF4 support _enabled_]
-4. NCO
-5. numpy
-6. netcdf4-python
-7. python-lxml
-8. CFunits-python
-9. CFChecker
-10. ncdismember
-
-All 10 packages can use default installs _except_ HDF4 and netCDF.
-Following instructions for Fedora Core 20 (FC20), an RPM-based Linux OS
-Feedback and changes for other Linux-based OS's welcome to zender at uci.edu
-${H4DIR}, ${H5DIR}, ${NETCDFDIR}, ${NCODIR}, may all be different
-For simplicity CZ sets them all to /usr/local
-
-# 1. HDF4. Build in non-default manner. Turn-off its own netCDF support.
-# Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
-# HDF4 support not necessary though it makes ncdismember more comprehensive
-wget -c http://www.hdfgroup.org/ftp/HDF/HDF_Current/src/hdf-4.2.9.tar.gz
-tar xvzf hdf-4.2.9.tar.gz
-cd hdf-4.2.9
-./configure --enable-shared --disable-netcdf --disable-fortran --prefix=${H4DIR}
-make && make check && make install
-
-# 2. HDF5. Build normally. RPM may work too. Please let me know if so.
-# HDF5 is a necessary pre-requisite for netCDF4
-wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.11.tar.gz
-tar xvzf hdf5-1.8.11.tar.gz
-cd hdf5-1.8.11
-./configure --enable-shared --prefix=${H5DIR}
-make && make check && make install
-
-# 3. netCDF version 4.3.1 or later. Build in non-default manner with HDF4.
-# Per http://www.unidata.ucar.edu/software/netcdf/docs/build_hdf4.html
-# Earlier versions of netCDF may fail checking some HDF4 files
-wget -c ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.2.tar.gz
-tar xvzf netcdf-4.3.2.tar.gz
-cd netcdf-4.3.2
-CPPFLAGS="-I${H5DIR}/include -I${H4DIR}/include" \
-LDFLAGS="-L${H5DIR}/lib -L${H4DIR}/lib" \
-./configure --enable-hdf4 --enable-hdf4-file-tests
-make && make check && make install
-
-# 4. NCO version 4.4.0 or later. Some RPMs available. Or install by hand.
-# Later versions of NCO have much better support for ncdismember
-wget http://nco.sourceforge.net/src/nco-4.4.4.tar.gz .
-tar xvzf nco-4.4.4.tar.gz
-cd nco-4.4.4
-./configure --prefix=${NCODIR}
-make && make install
-
-# 5. numpy
-sudo yum install numpy -y
-
-# 6. netcdf4-python
-sudo yum install netcdf4-python -y
-
-# 7. python-lxml
-sudo yum install python-lxml -y
-
-# 8. CFunits-python. No RPM available. Must install by hand.
-# http://code.google.com/p/cfunits-python/
-wget http://cfunits-python.googlecode.com/files/cfunits-0.9.6.tar.gz .
-tar xvzf cfunits-0.9.6.tar.gz
-cd cfunits-0.9.6
-sudo python setup.py install
-
-# 9. CFChecker. No RPM available. Must install by hand.
-# https://bitbucket.org/mde_/cfchecker
-wget https://bitbucket.org/mde_/cfchecker/downloads/CFchecker-1.5.15.tar.bz2 .
-tar xvjf CFchecker-1.5.15.tar.bz2
-cd CFchecker
-sudo python setup.py install
-
-# 10. ncdismember. Copy script from http://nco.sf.net/nco.html#ncdismember
-# Store dismembered files somewhere, e.g., ${DATA}/nco/tmp/hdf
-mkdir -p ${DATA}/nco/tmp/hdf
-# Many datasets work with a simpler command...
-ncdismember ~/nco/data/in.nc ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ~/nco/data/mdl_1.nc ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/AMSR_E_L2_Rain_V10_200905312326_A.hdf \
- ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5
-ncdismember ${DATA}/hdf/HIRDLS-Aura_L3ZAD_v06-00-00-c02_2005d022-2008d077.he5 ${DATA}/nco/tmp/hdf cf 1.5
-# Some datasets, typically .h5, require the --fix_rec_dmn=all argument
-ncdismember_${DATA}/hdf/GATMO_npp_d20100906_t1935191_e1935505_b00012_c20110707155932065809_noaa_ops.h5 ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
-ncdismember ${DATA}/hdf/mabel_l2_20130927t201800_008_1.h5 \
- ${DATA}/nco/tmp/hdf cf 1.5 --fix_rec_dmn=all
-EOF
-</verbatim>
-</example>
-<!-- c scp ~/ncdismember.pdf dust.ess.uci.edu:/var/www/html/diwg -->
-<para>A <acronym><acronymword>PDF</acronymword></acronym> version of these instructions is available
-<uref><urefurl>http://dust.ess.uci.edu/diwg/ncdismember.pdf</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-</para>
-<html endspaces=" ">
-<a name="ftn"></a> <!&textndash; http://nco.sf.net/nco.html#ftn &textndash;>
-<a name="-F"></a> <!&textndash; http://nco.sf.net/nco.html#-F &textndash;>
-</html>
-</subsection>
-</section>
-<node name="C-and-Fortran-Index-Conventions" spaces=" "><nodename>C and Fortran Index Conventions</nodename><nodenext spaces=" ">Hyperslabs</nodenext><nodeprev spaces=" ">Group Path Editing</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>C and Fortran Index conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="572">index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="573">Fortran index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="574">C index convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="575"><code>-F</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="576"><code>--fortran</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-F</samp>&linebreak;
-Long options: <samp>--fortran</samp>&linebreak;
-</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="577">I/O</indexterm></cindex>
-<para>The <samp>-F</samp> switch changes <acronym><acronymword>NCO</acronymword></acronym> to read and write with
-the Fortran index convention.
-By default, <acronym><acronymword>NCO</acronymword></acronym> uses C-style (0-based) indices for all I/O.
-<w>In C</w>, indices count <w>from 0</w> (rather <w>than 1</w>), and
-dimensions are ordered from slowest (inner-most) to fastest
-(outer-most) varying.
-In Fortran, indices count <w>from 1</w> (rather <w>than 0</w>), and
-dimensions are ordered from fastest (inner-most) to slowest
-(outer-most) varying.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="578">transpose</indexterm></cindex>
-Hence <w>C and</w> Fortran data storage conventions represent mathematical
-transposes of eachother.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="579">record variable</indexterm></cindex>
-Note that record variables contain the record dimension as the most
-slowly varying dimension.
-See <ref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></ref> for techniques
-to re-order (including transpose) dimensions and to reverse data
-storage order.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="580">record dimension</indexterm></cindex>
-<para>Consider a file <file>85.nc</file> containing <w>12 months</w> of data in the
-record dimension <code>time</code>.
-The following hyperslab operations produce identical results, a
-June-July-August average of the data:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -d time,5,7 85.nc 85_JJA.nc
-ncra -F -d time,6,8 85.nc 85_JJA.nc
-</pre></example>
-
-<para>Printing variable <var>three_dmn_var</var> in file <file>in.nc</file> first with
-the <w>C indexing</w> convention, then with Fortran indexing convention
-results in the following output formats:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=1000 lon[0]=-180 three_dmn_var[0]=0
-...
-% ncks -F -v three_dmn_var in.nc
-lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
-...
-</pre></example>
-
-<html endspaces=" ">
-<a name="-d"></a> <!&textndash; http://nco.sf.net/nco.html#-d &textndash;>
-<a name="-0"></a> <!&textndash; http://nco.sf.net/nco.html#-0 &textndash;>
-<a name="dmn"></a> <!&textndash; http://nco.sf.net/nco.html#dmn &textndash;>
-<a name="hyp"></a> <!&textndash; http://nco.sf.net/nco.html#hyp &textndash;>
-<a name="hyperslab"></a> <!&textndash; http://nco.sf.net/nco.html#hyperslab &textndash;>
-</html>
-</section>
-<node name="Hyperslabs" spaces=" "><nodename>Hyperslabs</nodename><nodenext spaces=" ">Stride</nodenext><nodeprev spaces=" ">C and Fortran Index Conventions</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Hyperslabs </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="581">hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="582">dimension limits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="583">coordinate limits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="584"><code>-0</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="585"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="586"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="587"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-Long options:
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>,&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-</para></cartouche>
-<para><w>A <dfn>hyperslab</dfn></w> is a subset of a variable&textrsquo;s data.
-The coordinates of a hyperslab are specified with the
-<code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code> short
-option (or with the same arguments to the <samp>--dimension</samp> or
-<samp>--dmn</samp> long options).
-At least one hyperslab argument (<var>min</var>, <var>max</var>, or <var>stride</var>)
-must be present.
-The bounds of the hyperslab to be extracted are specified by the
-associated <var>min</var> and <var>max</var> values.
-<w>A half</w>-open range is specified by omitting either the <var>min</var> or
-<var>max</var> parameter.
-The separating comma must be present to indicate the omission of one of
-these arguments.
-The unspecified limit is interpreted as the maximum or minimum value in
-the unspecified direction.
-<w>A cross</w>-section at a specific coordinate is extracted by specifying only
-the <var>min</var> limit and omitting a trailing comma.
-Dimensions not mentioned are passed with no reduction in range.
-The dimensionality of variables is not reduced (in the case of a
-cross-section, the size of the constant dimension will be one).
-</para><example endspaces=" ">
-<pre xml:space="preserve"># First and second longitudes
-ncks -F -d lon,1,2 in.nc out.nc
-# Second and third longitudes
-ncks -d lon,1,2 in.nc out.nc
-</pre></example>
-
-<para>As of version 4.2.1 (August, 2012), <acronym><acronymword>NCO</acronymword></acronym> allows one to extract
-the last <var>N</var> elements of a hyperslab.
-Negative integers as <var>min</var> or <var>max</var> elements of a hyperslab
-specification indicate offsets from the end (Python also uses this
-convention).
-Consistent with this convention, the value <samp>-1</samp> (negative one)
-indicates the last element of a dimension, and negative zero is
-algebraically equivalent to zero and so indicates the first element of a
-dimension.
-Previously, for example, <samp>-d time,-2,-1</samp> caused a domain error.
-Now it means select the penultimate and last timesteps, independent of
-the size of the <code>time</code> dimension.
-Select only the first and last timesteps, respectively, with
-<samp>-d time,0</samp> and <samp>-d time,-1</samp>.
-Negative integers work for <var>min</var> and <var>max</var> indices, though not
-for <var>stride</var>.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Second through penultimate longitudes
-ncks -d lon,1,-2 in.nc out.nc
-# Second through last longitude
-ncks -d lon,1,-1 in.nc out.nc
-# Second-to-last to last longitude
-ncks -d lon,-3,-1 in.nc out.nc
-# Second-to-last to last longitude
-ncks -d lon,-3, in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>The <samp>-F</samp> argument, if any, applies the Fortran index convention
-only to indices specified as positive integers:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># First through penultimate longitudes
-ncks -F -d lon,1,-2 in.nc out.nc (-F affects only start index)
-# First through last longitude
-ncks -F -d lon,1,-1 in.nc out.nc
-# Second-to-last to penultimate longitude (-F has no effect)
-ncks -F -d lon,-3,-1 in.nc out.nc
-# Second-to-last to last longitude (-F has no effect)
-ncks -F -d lon,-3, in.nc out.nc
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="588">stride</indexterm></cindex>
-<para>Coordinate values should be specified using real notation with a decimal
-point required in the value, whereas dimension indices are specified
-using integer notation without a decimal point.
-This convention serves only to differentiate coordinate values from
-dimension indices.
-It is independent of the type of any netCDF coordinate variables.
-For a given dimension, the specified limits must both be coordinate
-values (with decimal points) or dimension indices (no decimal points).
-</para>
-<para>If values of a coordinate-variable are used to specify a range or
-cross-section, then the coordinate variable must be monotonic (values
-either increasing or decreasing).
-In this case, command-line values need not exactly match coordinate
-values for the specified dimension.
-Ranges are determined by seeking the first coordinate value to occur in
-the closed range [<var>min</var>,<var>max</var>] and including all subsequent
-values until one falls outside the range.
-The coordinate value for a cross-section is the coordinate-variable
-value closest to the specified value and must lie within the range or
-coordinate-variable values.
-The <var>stride</var> argument, if any, must be a dimension index, not a
-coordinate value.
-<xref label="Stride"><xrefnodename>Stride</xrefnodename></xref>, for more information on the <var>stride</var> option.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># All longitude values between 1 and 2 degrees
-ncks -d lon,1.0,2.0 in.nc out.nc
-# All longitude values between 1 and 2 degrees
-ncks -F -d lon,1.0,2.0 in.nc out.nc
-# Every other longitude value between 0 and 90 degrees
-ncks -F -d lon,0.0,90.0,2 in.nc out.nc
-</pre></example>
-<para>As shown, we recommend using a full floating point suffix of <code>.0</code>
-instead of simply <code>.</code> in order to make obvious the selection of
-hyperslab elements based on coordinate value rather than index.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="589"><code>NC_CHAR</code></indexterm></cindex>
-<para>User-specified coordinate limits are promoted to double-precision values
-while searching for the indices which bracket the range.
-Thus, hyperslabs on coordinates of type <code>NC_CHAR</code> are computed
-numerically rather than lexically, so the results are unpredictable.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="590">wrapped coordinates</indexterm></cindex>
-<para>The relative magnitude of <var>min</var> and <var>max</var> indicate to the
-operator whether to expect a <dfn>wrapped coordinate</dfn>
-(<pxref label="Wrapped-Coordinates"><xrefnodename>Wrapped Coordinates</xrefnodename></pxref>), such as longitude.
-If <math><var>min</var> > <var>max</var></math>, the <acronym><acronymword>NCO</acronymword></acronym> expects the
-coordinate to be wrapped, and a warning message will be printed.
-When this occurs, <acronym><acronymword>NCO</acronymword></acronym> selects all values outside the domain
-[<math><var>max</var> < <var>min</var></math>], i.e., all the values exclusive of the
-values which would have been selected if <var>min</var> and <var>max</var> were
-swapped.
-If this seems confusing, test your command on just the coordinate
-variables with <command>ncks</command>, and then examine the output to ensure
-<acronym><acronymword>NCO</acronymword></acronym> selected the hyperslab you expected (coordinate wrapping
-is currently only supported by <command>ncks</command>).
-</para>
-<para>Because of the way wrapped coordinates are interpreted, it is very
-important to make sure you always specify hyperslabs in the
-monotonically increasing sense, i.e., <math><var>min</var> < <var>max</var></math>
-(even if the underlying coordinate variable is monotonically
-decreasing).
-The only exception to this is when you are indeed specifying a wrapped
-coordinate.
-The distinction is crucial to understand because the points selected by,
-e.g., <code>-d longitude,50.,340.</code>, are exactly the complement of the
-points selected by <code>-d longitude,340.,50.</code>.
-</para>
-<para>Not specifying any hyperslab option is equivalent to specifying full
-ranges of all dimensions.
-This option may be specified more than once in a single command
-(each hyperslabbed dimension requires its own <code>-d</code> option).
-</para>
-<html endspaces=" ">
-<a name="srd"></a> <!&textndash; http://nco.sf.net/nco.html#srd &textndash;>
-<a name="stride"></a> <!&textndash; http://nco.sf.net/nco.html#stride &textndash;>
-</html>
-</section>
-<node name="Stride" spaces=" "><nodename>Stride</nodename><nodenext spaces=" ">Record Appending</nodenext><nodeprev spaces=" ">Hyperslabs</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Stride </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="591">stride</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="592"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="593"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="594"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],<var>stride</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-Long options:
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>,&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-</para></cartouche>
-<para>All data operators support specifying a <dfn>stride</dfn> for any and all
-dimensions at the same time.
-The <var>stride</var> is the spacing between consecutive points in a
-hyperslab.
-<w>A <var>stride</var></w> <w>of 1</w> picks all the elements of the hyperslab, and
-a <var>stride</var> <w>of 2</w> skips every other element, etc.&eosperiod;
-<command>ncks</command> multislabs support strides, and are more powerful than
-the regular hyperslabs supported by the other operators
-(<pxref label="Multislabs"><xrefnodename>Multislabs</xrefnodename></pxref>).
-Using the <var>stride</var> option for the record dimension with
-<command>ncra</command> and <command>ncrcat</command> makes it possible, for instance, to
-average or concatenate regular intervals across multi-file input data sets.
-</para>
-<para>The <var>stride</var> is specified as the optional fourth argument to the
-<samp>-d</samp> hyperslab specification:
-<code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code>.
-Specify <var>stride</var> as an integer (i.e., no decimal point) following
-the third comma in the <samp>-d</samp> argument.
-There is no default value for <var>stride</var>.
-Thus using <samp>-d time,,,2</samp> is valid but <samp>-d time,,,2.0</samp> and
-<samp>-d time,,,</samp> are not.
-When <var>stride</var> is specified but <var>min</var> is not, there is an
-ambiguity as to whether the extracted hyperslab should begin with (using
-C-style, 0-based indexes) <w>element 0</w> or element <samp>stride-1</samp>.
-<acronym><acronymword>NCO</acronymword></acronym> must resolve this ambiguity and it chooses <w>element 0</w>
-as the first element of the hyperslab when <var>min</var> is not specified.
-Thus <samp>-d time,,,<var>stride</var></samp> is syntactically equivalent to
-<samp>-d time,0,,<var>stride</var></samp>.
-This means, for example, that specifying the operation
-<samp>-d time,,,2</samp> on the array <samp>1,2,3,4,5</samp> selects the hyperslab
-<samp>1,3,5</samp>.
-To obtain the hyperslab <samp>2,4</samp> instead, simply explicitly specify
-the starting index <w>as 1,</w> i.e., <samp>-d time,1,,2</samp>.
-</para>
-<para>For example, consider a file <file>8501_8912.nc</file> which contains 60
-consecutive months of data.
-Say you wish to obtain just the March data from this file.
-Using 0-based subscripts (<pxref label="C-and-Fortran-Index-Conventions"><xrefnodename>C and Fortran Index Conventions</xrefnodename></pxref>) these
-data are stored in records <w>2, 14, &dots; 50</w> so the desired
-<var>stride</var> <w>is 12.</w>
-Without the <var>stride</var> option, the procedure is very awkward.
-One could use <command>ncks</command> five times and then use <command>ncrcat</command> to
-concatenate the resulting files together:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="595">Bourne Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="596">C Shell</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for idx in 02 14 26 38 50; do # Bourne Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
-done
-foreach idx (02 14 26 38 50) # C Shell
- ncks -d time,${idx} 8501_8912.nc foo.${idx}
-end
-ncrcat foo.?? 8589_03.nc
-rm foo.??
-</verbatim>
-</example>
-<para>With the <var>stride</var> option, <command>ncks</command> performs this hyperslab
-extraction in one operation:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d time,2,,12 8501_8912.nc 8589_03.nc
-</pre></example>
-<para><xref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></xref>, for more information on <command>ncks</command>.
-</para>
-<para>Applying the <var>stride</var> option to the record dimension in
-<command>ncra</command> and <command>ncrcat</command> makes it possible, for instance, to
-average or concatenate regular intervals across multi-file input data
-sets.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8589_03.nc
-ncrcat -F -d time,3,,12 85.nc 86.nc 87.nc 88.nc 89.nc 8503_8903.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="rec_apn"></a> <!&textndash; http://nco.sf.net/nco.html#rec_apn &textndash;>
-<a name="record_append"></a> <!&textndash; http://nco.sf.net/nco.html#record_append &textndash;>
-</html>
-</section>
-<node name="Record-Appending" spaces=" "><nodename>Record Appending</nodename><nodenext spaces=" ">Subcycle</nodenext><nodeprev spaces=" ">Stride</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Record Appending</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="597">record append</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="598"><code>--rec_apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="599"><code>--record_append</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncra</command>, <command>ncrcat</command>&linebreak;
-Short options: None&linebreak;
-Long options:
-<samp>--rec_apn</samp>, <samp>--record_append</samp>&linebreak;
-</para></cartouche>
-<para>As of version 4.2.6 (March, 2013), <acronym><acronymword>NCO</acronymword></acronym> allows both
-Multi-File, Multi-Record operators (<command>ncra</command> and <command>ncrcat</command>)
-to append their output directly to the end of an existing file.
-This feature may be used to augment a target file, rather than construct
-it from scratch.
-This helps, for example, when a timeseries is concatenated from input
-data that becomes available in stages rather than all at once.
-In such cases this switch significantly speeds writing.
-</para>
-<para>Consider the use case where one wishes to preserve the contents of
-<file>fl_1.nc</file>, and add to them new records contained in
-<file>fl_2.nc</file>.
-Previously the output had to be placed in a third file, <file>fl_3.nc</file>
-(which could also safely be named <file>fl_2.nc</file>), via
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat -O fl_1.nc fl_2.nc fl_3.nc
-</pre></example>
-<para>Under the hood this operation copies all information in
-<file>fl_1.nc</file> and <file>fl_2.nc</file> not once but twice.
-The first copy is performed through the netCDF interface, as all
-data from <file>fl_1.nc</file> and <file>fl_2.nc</file> are extracted and placed in
-the output file.
-The second copy occurs (usually much) more quickly as the (by default)
-temporary output file is copied (sometimes a quick re-link suffices) to
-the final output file (<pxref label="Temporary-Output-Files"><xrefnodename>Temporary Output Files</xrefnodename></pxref>).
-All this copying is expensive for large files.
-</para>
-<para>The <samp>--record_append</samp> switch appends all records in <file>fl_2.nc</file>
-to the end (after the last record) of <file>fl_1.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat --rec_apn fl_2.nc fl_1.nc
-</pre></example>
-<para>The ordering of the filename arguments may seem non-intuitive.
-If the record variable represents time in these files, then the
-values in <file>fl_1.nc</file> precede those in <file>fl_2.nc</file>, so why
-do the files appear in the reverse order on the command line?
-<file>fl_1.nc</file> is the last file named because it is the pre-existing
-output file to which we will append all the other input files listed
-(in this case only <file>fl_2.nc</file>).
-The contents of <file>fl_1.nc</file> are completely preserved, and only
-values in <file>fl_2.nc</file> (and any other input files) are copied.
-This switch avoids the necessity of copying all of <file>fl_1.nc</file>
-through the netCDF interface to a new output file.
-The <samp>--rec_apn</samp> switch automatically puts <acronym><acronymword>NCO</acronymword></acronym> into
-append mode (<pxref label="Appending-Variables"><xrefnodename>Appending Variables</xrefnodename></pxref>), so specifying <samp>-A</samp> is
-redundant, and simultaneously specifying overwrite mode with <samp>-O</samp>
-causes an error.
-By default, NCO works in an intermediate temporary file.
-Power users may combine <samp>--rec_apn</samp> with the <samp>--no_tmp_fl</samp>
-switch (<pxref label="Temporary-Output-Files"><xrefnodename>Temporary Output Files</xrefnodename></pxref>):
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat --rec_apn --no_tmp_fl fl_2.nc fl_1.nc
-</pre></example>
-<para>This avoids creating an intermediate file, and copies only the
-minimal amount of data (i.e., all of <file>fl_2.nc</file>).
-Hence, it is fast.
-We recommend users try to understand the safety trade-offs involved.
-</para>
-<html endspaces=" ">
-<a name="subcycle"></a> <!&textndash; http://nco.sf.net/nco.html#subcycle &textndash;>
-<a name="ssc"></a> <!&textndash; http://nco.sf.net/nco.html#ssc &textndash;>
-<a name="duration"></a> <!&textndash; http://nco.sf.net/nco.html#duration &textndash;>
-<a name="drn"></a> <!&textndash; http://nco.sf.net/nco.html#drn &textndash;>
-<a name="mro"></a> <!&textndash; http://nco.sf.net/nco.html#mro &textndash;>
-</html>
-</section>
-<node name="Subcycle" spaces=" "><nodename>Subcycle</nodename><nodenext spaces=" ">Multislabs</nodenext><nodeprev spaces=" ">Record Appending</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Subcycle</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="600">duration</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="601">sub-cycle</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="602">subcycle</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="603">MRO</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="604">Multi-Record Operator</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="605"><code>--mro</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="606"><code>-d <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="607"><code>--dimension <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],[<var>subcycle</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="608"><code>--dmn <var>dim</var>,[<var>min</var>],[<var>max</var>],[<var>stride</var>],<var>subcycle</var>]</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncra</command>, <command>ncrcat</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>&linebreak;
-Long options:
-<samp>--mro</samp>
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]]</samp>&linebreak;
-</para></cartouche>
-<para>As of version 4.2.1 (August, 2012), <acronym><acronymword>NCO</acronymword></acronym> allows both Multi-File,
-Multi-Record operators, <command>ncra</command> and <command>ncrcat</command>, to extract
-and operate on multiple groups of records.
-These groups may be connected to physical <emph>sub-cycles</emph> of a
-periodic nature, e.g., months of a year, or hours of a day.
-Or they may be thought of as groups of a specifed duration.
-The feature and the terminology to describe it are new.
-For now, we call this the <dfn>subcycle feature</dfn>, sometimes abbreviated
-<acronym><acronymword>SSC</acronymword></acronym>
-<footnote><para>When originally released in 2012 this was called the
-<dfn>duration feature</dfn>, and was abbreviated <acronym><acronymword>DRN</acronymword></acronym>.</para></footnote>.
-</para>
-<para>The subcycle feature allows processing of groups of records
-separated by regular intervals of records.
-It is perhaps best illustrated by an extended example which describes
-how to solve the same problem both with and without the <acronym><acronymword>SSC</acronymword></acronym> feature.
-</para>
-<para>The first task in climate data processing is often creating seasonal
-cycles.
-Suppose a 150-year climate simulation produces 150 output files, each
-comprising 12 records, each record a monthly mean:
-<file>1850.nc</file>, <file>1851.nc</file>, ... <file>1999.nc</file>.
-Our goal is to create a single file containing the summertime (June,
-July, and August, aka JJA) mean.
-Traditionally, we would first compute the climatological monthly
-mean for each month of summer.
-Each of these is a 150-year mean, i.e.,
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Step 1: Create climatological monthly files clm06.nc..clm08.nc
-for mth in {6..8}; do
- mm=`printf "%02d" $mth`
- ncra -O -F -d time,${mm},,12 -n 150,4,1 1850.nc clm${mm}.nc
-done
-# Step 2: Average climatological monthly files into summertime mean
-ncra -O clm06 clm07.nc clm08.nc clm_JJA.nc
-</verbatim>
-</example>
-<noindent></noindent>
-<para>So far, nothing is unusual and this task can be performed by any
-<acronym><acronymword>NCO</acronymword></acronym> version.
-The <acronym><acronymword>SSC</acronymword></acronym> feature makes obsolete the need for the shell loop
-used in <w>Step 1</w> above.
-</para>
-<para>The new <acronym><acronymword>SSC</acronymword></acronym> option aggregates more than one input record at a time
-before performing arithmetic operations, and, with an additional
-switch, allows us to archive those results in multiple record output
-(MRO) files.
-This reduces the task of producing the climatological summertime
-mean to one step:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Step 1: Compute climatological summertime mean
-ncra -O -F -d time,6,,12,3 -n 150,4,1 1850.nc clm_JJA.nc
-</pre></example>
-<noindent></noindent>
-<para>The <acronym><acronymword>SSC</acronymword></acronym> option instructs <command>ncra</command> (or <command>ncrcat</command>)
-to process files in groups of three records.
-To better understand the meaning of each argument to the <samp>-d</samp>
-hyperslab option, read it this way: &textldquo;for the time dimension start with
-the sixth record, continue without end, repeat the process every twelfth
-record, and define a sub-cycle as three consecutive records&textrdquo;.
-</para>
-<para>A separate option, <samp>--mro</samp>, instructs <command>ncra</command> to output
-its results from each sub-group, and to produce a <dfn>Multi-Record Output</dfn>
-(MRO) file rather than a <dfn>Single-Record Output</dfn> (SRO) file.
-Unless <samp>--mro</samp> is specified, <command>ncra</command> collects together all
-the sub-groups, operates on their ensemble, and produces a single
-output record.
-The addition of <samp>--mro</samp> to the above example causes <command>ncra</command>
-to archive all (150) annual summertime means to one file:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Step 1: Archive all 150 summertime means in one file
-ncra --mro -O -F -d time,6,,12,3 -n 150,4,1 1850.nc 1850_2009_JJA.nc
-# ...or all (150) annual means...
-ncra --mro -O -d time,,,12,12 -n 150,4,1 1850.nc 1850_2009.nc
-</pre></example>
-<noindent></noindent>
-<para>These operations generate and require no intermediate files.
-This contrasts to previous <acronym><acronymword>NCO</acronymword></acronym> methods, which require
-generating, averaging, then catenating 150 files.
-The <samp>--mro</samp> option has no effect on, or rather is redundant for,
-<command>ncrcat</command> since <command>ncrcat</command> always outputs all selected
-records.
-</para>
-<html endspaces=" ">
-<a name="msa"></a> <!&textndash; http://nco.sf.net/nco.html#msa &textndash;>
-<a name="mlt"></a> <!&textndash; http://nco.sf.net/nco.html#mlt &textndash;>
-</html>
-</section>
-<node name="Multislabs" spaces=" "><nodename>Multislabs</nodename><nodenext spaces=" ">Wrapped Coordinates</nodenext><nodeprev spaces=" ">Subcycle</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Multislabs </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="609">multislab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="610">multi-hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="611"><acronym><acronymword>MSA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="612"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="613"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="614"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="615"><code>--msa</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="616"><code>--msa_usr_rdr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="617"><code>--msa_user_order</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-Long options:
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>,&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-<samp>--msa_usr_rdr</samp>, <samp>--msa_user_order</samp>&linebreak;
-</para></cartouche>
-<para>A <w>multislab</w> is a union of one or more hyperslabs.
-One defines multislabs by chaining together hyperslab commands, i.e.,
-<kbd>-d</kbd> options (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-Support for specifying a <dfn>multi-hyperslab</dfn> or <dfn>multislab</dfn> for
-any variable was first added to <command>ncks</command> in late 2002.
-The other operators received these capabilities in April 2008.
-Multi-slabbing is often referred to by the acronym <acronym><acronymword>MSA</acronymword></acronym>,
-which stands for &textldquo;Multi-Slabbing Algorithm&textrdquo;.
-As explained below, the user may additionally request that the
-multislabs be returned in the user-specified order, rather than the
-on-disk storage order.
-Although <acronym><acronymword>MSA</acronymword></acronym> user-ordering has been available in all operators
-since 2008, most users were unaware of it since the documentation
-(below, and in the man pages) was not written until July 2013.
-</para>
-<para>Multislabs overcome many restraints that limit simple hyperslabs.
-<w>A single</w> <kbd>-d</kbd> option can only specify a contiguous and/or
-a regularly spaced multi-dimensional data array.
-Multislabs are constructed from multiple <kbd>-d</kbd> options and may
-therefore have non-regularly spaced arrays.
-For example, suppose it is desired to operate on all longitudes
-from 10.0 to 20.0 and from 80.0 to <w>90.0 degrees</w>.
-The combined range of longitudes is not selectable in a single
-hyperslab specfication of the form
-<samp>-d <var>dimension</var>,<var>min</var>,<var>max</var></samp> or
-<samp>-d <var>dimension</var>,<var>min</var>,<var>max</var>,<var>stride</var></samp> because its
-elements are irregularly spaced in coordinate space (and presumably
-in index space too).
-The multislab specification for obtaining these values is simply
-the union of the hyperslabs specifications that comprise the multislab,
-i.e.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d lon,10.,20. -d lon,80.,90. in.nc out.nc
-ncks -d lon,10.,15. -d lon,15.,20. -d lon,80.,90. in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>Any number of hyperslabs specifications may be chained together
-to specify the multislab.
-<acronym><acronymword>MSA</acronymword></acronym> creates an output dimension equal in size to the sum of
-the sizes of the multislabs.
-This can be used to extend and or pad coordinate grids.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="618">stride</indexterm></cindex>
-<para>Users may specify redundant ranges of indices in a multislab, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>This command retrieves the first five longitudes, and then every other
-longitude value up to the tenth.
-Elements 0, 2, <w>and 4</w> are specified by both hyperslab arguments (hence
-this is redundant) but will count only once if an arithmetic operation
-is being performed.
-This example uses index-based (not coordinate-based) multislabs because
-the <var>stride</var> option only supports index-based hyper-slabbing.
-<xref label="Stride"><xrefnodename>Stride</xrefnodename></xref>, for more information on the <var>stride</var> option.
-</para>
-<para>Multislabs are more efficient than the alternative of sequentially
-performing hyperslab operations and concatenating the results.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="619">I/O</indexterm></cindex>
-This is because <acronym><acronymword>NCO</acronymword></acronym> employs a novel multislab algorithm to
-minimize the number of I/O operations when retrieving irregularly spaced
-data from disk.
-The <acronym><acronymword>NCO</acronymword></acronym> multislab algorithm retrieves each element from disk
-once and only once.
-Thus users may take some shortcuts in specifying multislabs and the
-algorithm will obtain the intended values.
-Specifying redundant ranges is not encouraged, but may be useful on
-occasion and will not result in unintended consequences.
-</para>
-<para>Suppose the <var>Q</var> variable contains three dimensional arrays of
-distinct chemical constituents in no particular order.
-We are interested in the NOy species in a certain geographic range.
-Say that NO, NO2, and N2O5 are <w>elements 0</w>, 1, <w>and 5</w> of the
-<var>species</var> dimension of <var>Q</var>.
-The multislab specification might look something like
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d species,0,1 -d species,5 -d lon,0,4 -d lon,2,9,2 in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>Multislabs are powerful because they may be specified for every
-dimension at the same time.
-Thus multislabs obsolete the need to execute multiple <command>ncks</command>
-commands to gather the desired range of data.
-</para>
-<html endspaces=" ">
-<a name="msa_usr_rdr"></a> <!&textndash; http://nco.sf.net/nco.html#msa_usr_rdr &textndash;>
-</html>
-<para>The <acronym><acronymword>MSA</acronymword></acronym> user-order switch <samp>--msa_usr_rdr</samp> (or
-<samp>--msa_user_order</samp>, both of which shorten to <samp>--msa</samp>)
-requests that the multislabs be output in the user-specified
-order from the command-line, rather than in the input-file on-disk
-storage order.
-This allows the user to perform complex data re-ordering in one
-operation that would otherwise require cumbersome steps of
-hyperslabbing, concatenating, and permuting.
-Consider the recent example of a user who needed to convert datasets
-stored with the longitude coordinate <code>Lon</code> ranging from
-[−180,180) to datasets that follow the [0,360) convention.
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -H -v Lon in.nc
-Lon[0]=-180
-Lon[1]=-90
-Lon[2]=0
-Lon[3]=90
-</pre></example>
-<noindent></noindent>
-<para>Although simple in theory, this task requires both mathematics to
-change the numerical value of the longitude coordinate, data
-hyperslabbing to split the input on-disk arrays at Greenwich, and data
-re-ordering within to stitch the western hemisphere onto the eastern
-hemisphere at the date-line.
-The <samp>--msa</samp> user-order switch overrides the default that data are
-output in the same order in which they are stored on-disk in the input
-file, and instead stores them in the same order as the multi-slabs are
-given to the command line.
-This default is intuitive and is not important in most uses.
-However, the <acronym><acronymword>MSA</acronymword></acronym> user-order switch allows users to meet
-their output order needs by specifying multi-slabs in a certain order.
-Compare the results of default ordering to user-ordering for longitude:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -O -H -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
-Lon[0]=-180
-Lon[1]=-90
-Lon[2]=0
-Lon[3]=90
-% ncks -O -H --msa -v Lon -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc
-Lon[0]=0
-Lon[1]=90
-Lon[2]=-180
-Lon[3]=-90
-</pre></example>
-<noindent></noindent>
-<para>The two multi-slabs are the same but they can be presented to screen,
-or to an output file, in either order.
-The second example shows how to place the western hemisphere after the
-eastern hemisphere, although they are stored in the opposite order in
-the input file.
-</para>
-<para>With this background, one sees that the following commands suffice to
-rotate the input file by 180 degrees longitude:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -O -v LatLon --msa -d Lon,0.,180. -d Lon,-180.,-1.0 in.nc out.nc
-% ncap2 -O -s 'where(Lon < 0) Lon=Lon+360' out.nc out.nc
-% ncks -C -H -v LatLon ~/nco/data/in.nc
-Lat[0]=-45 Lon[0]=-180 LatLon[0]=0
-Lat[0]=-45 Lon[1]=-90 LatLon[1]=1
-Lat[0]=-45 Lon[2]=0 LatLon[2]=2
-Lat[0]=-45 Lon[3]=90 LatLon[3]=3
-Lat[1]=45 Lon[0]=-180 LatLon[4]=4
-Lat[1]=45 Lon[1]=-90 LatLon[5]=5
-Lat[1]=45 Lon[2]=0 LatLon[6]=6
-Lat[1]=45 Lon[3]=90 LatLon[7]=7
-% ncks -C -H -v LatLon ~/out.nc
-Lat[0]=-45 Lon[0]=0 LatLon[0]=2
-Lat[0]=-45 Lon[1]=90 LatLon[1]=3
-Lat[0]=-45 Lon[2]=180 LatLon[2]=0
-Lat[0]=-45 Lon[3]=270 LatLon[3]=1
-Lat[1]=45 Lon[0]=0 LatLon[4]=6
-Lat[1]=45 Lon[1]=90 LatLon[5]=7
-Lat[1]=45 Lon[2]=180 LatLon[6]=4
-Lat[1]=45 Lon[3]=270 LatLon[7]=5
-</pre></example>
-<noindent></noindent>
-<para>There are other workable, valid methods to accomplish this rotation, yet
-none are simpler nor more efficient than utilizing <acronym><acronymword>MSA</acronymword></acronym>
-user-ordering.
-Some final comments on applying this algorithm:
-Be careful to specify hemispheres that do not overlap, e.g., by
-inadvertently specifying coordinate ranges that both include Greenwich.
-Some users will find using index-based rather than coordinate-based
-hyperslabs makes this clearer.
-</para>
-<html endspaces=" ">
-<a name="wrp"></a> <!&textndash; http://nco.sf.net/nco.html#wrp &textndash;>
-</html>
-</section>
-<node name="Wrapped-Coordinates" spaces=" "><nodename>Wrapped Coordinates</nodename><nodenext spaces=" ">Auxiliary Coordinates</nodenext><nodeprev spaces=" ">Multislabs</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Wrapped Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="620">wrapped coordinates</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="621">longitude</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="622"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="623"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="624"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncks</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-Long options:
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>,&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-</para></cartouche>
-<para><w>A <dfn>wrapped coordinate</dfn></w> is a coordinate whose values increase or
-decrease monotonically (nothing unusual so far), but which represents a
-dimension that ends where it begins (i.e., wraps around on itself).
-Longitude (i.e., degrees on a circle) is a familiar example of a wrapped
-coordinate.
-Longitude increases to the East of Greenwich, England, where it is
-defined to be zero.
-Halfway around the globe, the longitude is <w>180 degrees</w> East (or West).
-Continuing eastward, longitude increases to <w>360 degrees</w> East at
-Greenwich.
-The longitude values of most geophysical data are either in the range
-[0,360), or [−180,180).
-In either case, the Westernmost and Easternmost longitudes are
-numerically separated by <w>360 degrees</w>, but represent contiguous
-regions on the globe.
-For example, the Saharan desert stretches from roughly 340 to
-<w>50 degrees</w> East.
-Extracting the hyperslab of data representing the Sahara from a global
-dataset presents special problems when the global dataset is stored
-consecutively in longitude from 0 to <w>360 degrees</w>.
-This is because the data for the Sahara will not be contiguous in the
-<var>input-file</var> but is expected by the user to be contiguous in the
-<var>output-file</var>.
-In this case, <command>ncks</command> must invoke special software routines to
-assemble the desired output hyperslab from multiple reads of the
-<var>input-file</var>.
-</para>
-<para>Assume the domain of the monotonically increasing longitude coordinate
-<code>lon</code> is <math>0 < <var>lon</var> < 360</math>.
-<command>ncks</command> will extract a hyperslab which crosses the Greenwich
-meridian simply by specifying the westernmost longitude as <var>min</var> and
-the easternmost longitude as <var>max</var>.
-The following commands extract a hyperslab containing the Saharan desert:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d lon,340.,50. in.nc out.nc
-ncks -d lon,340.,50. -d lat,10.,35. in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>The first example selects data in the same longitude range as the Sahara.
-The second example further constrains the data to having the same
-latitude as the Sahara.
-The coordinate <code>lon</code> in the <var>output-file</var>, <file>out.nc</file>, will
-no longer be monotonic!
-The values of <code>lon</code> will be, e.g., <samp>340, 350, 0, 10, 20, 30,
-40, 50</samp>.
-This can have serious implications should you run <file>out.nc</file> through
-another operation which expects the <code>lon</code> coordinate to be
-monotonically increasing.
-Fortunately, the chances of this happening are slim, since <code>lon</code>
-has already been hyperslabbed, there should be no reason to hyperslab
-<code>lon</code> again.
-Should you need to hyperslab <code>lon</code> again, be sure to give
-dimensional indices as the hyperslab arguments, rather than coordinate
-values (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="aux"></a> <!&textndash; http://nco.sf.net/nco.html#aux &textndash;>
-<a name="auxiliary"></a> <!&textndash; http://nco.sf.net/nco.html#auxiliary &textndash;>
-<a name="-X"></a> <!&textndash; http://nco.sf.net/nco.html#-X &textndash;>
-<a name="std_nm"></a> <!&textndash; http://nco.sf.net/nco.html#std_nm &textndash;>
-<a name="standard_name"></a> <!&textndash; http://nco.sf.net/nco.html#standard_name &textndash;>
-</html>
-</section>
-<node name="Auxiliary-Coordinates" spaces=" "><nodename>Auxiliary Coordinates</nodename><nodenext spaces=" ">UDUnits Support</nodenext><nodeprev spaces=" ">Wrapped Coordinates</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Auxiliary Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="625"><code>-X</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="626"><code>--auxiliary</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="627"><code>standard_name</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="628"><code>coordinates</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="629"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="630"><code>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="631"><code>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>&linebreak;
-Short options: <samp>-X <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></samp>&linebreak;
-Long options:
-<samp>--auxiliary <var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var></samp>&linebreak;
-</para></cartouche>
-<para>Utilize auxiliary coordinates specified in values of the coordinate
-variable&textrsquo;s <code>standard_name</code> attributes, if any, when interpreting
-hyperslab and multi-slab options.
-Also <samp>--auxiliary</samp>.
-This switch supports hyperslabbing cell-based grids over coordinate
-ranges.
-This works on datasets that associate coordinate variables to
-grid-mappings using the <acronym><acronymword>CF</acronymword></acronym>-convention (<pxref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></pxref>)
-<code>coordinates</code> and <code>standard_name</code> attributes described
-<uref><urefurl>http://cfconventions.org/1.6.html#coordinate-system</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-Currently, <acronym><acronymword>NCO</acronymword></acronym> understands auxiliary coordinate variables
-pointed to by the <code>standard_name</code> attributes for <var>latitude</var> and
-<var>longitude</var>.
-Cells that contain a value within the user-specified range
-[<var>lon_min</var>,<var>lon_max</var>,<var>lat_min</var>,<var>lat_max</var>] are
-included in the output hyperslab.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="632">cell-based grids</indexterm></cindex>
-<para>A cell-based grid collapses the horizontal spatial information
-(latitude and longitude) and stores it along a one-dimensional
-coordinate that has a one-to-one mapping to both latitude and longitude
-coordinates.
-Rectangular (in longitude and latitude) horizontal hyperslabs cannot
-be selected using the typical procedure (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) of
-separately specifying <samp>-d</samp> arguments for longitude and latitude.
-Instead, when the <samp>-X</samp> is used, <acronym><acronymword>NCO</acronymword></acronym> learns the names of
-the latitude and longitude coordinates by searching the
-<code>standard_name</code> attribute of all variables until it finds
-the two variables whose <code>standard_name</code>&textrsquo;s are &textldquo;latitude&textrdquo; and
-&textldquo;longitude&textrdquo;, respectively.
-This <code>standard_name</code> attribute for latitude and longitude
-coordinates follows the <acronym><acronymword>CF</acronymword></acronym>-convention
-(<pxref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></pxref>).
-</para>
-<para>Putting it all together, consider a variable <var>gds_3dvar</var> output from
-simulations on a cell-based geodesic grid.
-Although the variable contains three dimensions of data (time, latitude,
-and longitude), it is stored in the netCDF file with only two dimensions,
-<code>time</code> and <code>gds_crd</code>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -m -C -v gds_3dvar ~/nco/data/in.nc
-gds_3dvar: type NC_FLOAT, 2 dimensions, 4 attributes, chunked? no, \
- compressed? no, packed? no, ID = 41
-gds_3dvar RAM size is 10*8*sizeof(NC_FLOAT) = 80*4 = 320 bytes
-gds_3dvar dimension 0: time, size = 10 NC_DOUBLE, dim. ID = 20 \
- (CRD)(REC)
-gds_3dvar dimension 1: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-gds_3dvar attribute 0: long_name, size = 17 NC_CHAR, value = \
- Geodesic variable
-gds_3dvar attribute 1: units, size = 5 NC_CHAR, value = meter
-gds_3dvar attribute 2: coordinates, size = 15 NC_CHAR, value = \
- lat_gds lon_gds
-gds_3dvar attribute 3: purpose, size = 64 NC_CHAR, value = \
- Test auxiliary coordinates like those that define geodesic grids
-</pre></example>
-<para>The <code>coordinates</code> attribute lists the names of the latitude and
-longitude coordinates, <code>lat_gds</code> and <code>lon_gds</code>, respectively.
-The <code>coordinates</code> attribute is recommended though optional.
-With it, the user can immediately identify which variables contain
-the latitude and longitude coordinates.
-Without a <code>coordinates</code> attribute it would be unclear at first
-glance whether a variable resides on a cell-based grid.
-In this example, <code>time</code> is a normal record dimension and
-<code>gds_crd</code> is the cell-based dimension.
-</para>
-<para>The cell-based grid file must contain two variables whose
-<code>standard_name</code> attributes are &textldquo;latitude&textrdquo;, and &textldquo;longitude&textrdquo;:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -m -C -v lat_gds,lon_gds ~/nco/data/in.nc
-lat_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 37
-lat_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
-lat_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-lat_gds attribute 0: long_name, size = 8 NC_CHAR, value = Latitude
-lat_gds attribute 1: standard_name, size = 8 NC_CHAR, value = latitude
-lat_gds attribute 2: units, size = 6 NC_CHAR, value = degree
-lat_gds attribute 3: purpose, size = 62 NC_CHAR, value = \
- 1-D latitude coordinate referred to by geodesic grid variables
-
-lon_gds: type NC_DOUBLE, 1 dimensions, 4 attributes, \
- chunked? no, compressed? no, packed? no, ID = 38
-lon_gds RAM size is 8*sizeof(NC_DOUBLE) = 8*8 = 64 bytes
-lon_gds dimension 0: gds_crd, size = 8 NC_FLOAT, dim. ID = 17 (CRD)
-lon_gds attribute 0: long_name, size = 9 NC_CHAR, value = Longitude
-lon_gds attribute 1: standard_name, size = 9 NC_CHAR, value = longitude
-lon_gds attribute 2: units, size = 6 NC_CHAR, value = degree
-lon_gds attribute 3: purpose, size = 63 NC_CHAR, value = \
- 1-D longitude coordinate referred to by geodesic grid variables
-</pre></example>
-<para>In this example <code>lat_gds</code> and <code>lon_gds</code> represent the
-latitude or longitude, respectively, of cell-based variables.
-These coordinates (must) have the same single dimension (<code>gds_crd</code>,
-in this case) as the cell-based variables.
-And the coordinates must be one-dimensional&textmdash;multidimensional
-coordinates will not work.
-</para>
-<para>This infrastructure allows <acronym><acronymword>NCO</acronymword></acronym> to identify, interpret, and
-process (e.g., hyperslab) the variables on cell-based grids as easily
-as it works with regular grids.
-To time-average all the values between zero and <w>180 degrees</w>
-longitude and between plus and minus <w>30 degress</w> latitude, we use
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -O -X 0.,180.,-30.,30. -v gds_3dvar in.nc out.nc
-</pre></example>
-<para><acronym><acronymword>NCO</acronymword></acronym> accepts multiple <samp>-X</samp> arguments for cell-based grid
-multi-slabs, just as it accepts multiple <samp>-d</samp> arguments for
-multi-slabs of regular coordinates.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -O -X 0.,180.,-30.,30. -X 270.,315.,45.,90. in.nc out.nc
-</pre></example>
-<para>The arguments to <samp>-X</samp> are always interpreted as floating point
-numbers, i.e., as coordinate values rather than dimension indices
-so that these two commands produce identical results
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -X 0.,180.,-30.,30. in.nc out.nc
-ncra -X 0,180,-30,30 in.nc out.nc
-</pre></example>
-<para>In contrast, arguments to <samp>-d</samp> require decimal places to be
-recognized as coordinates not indices (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-We recommend always using decimal points with <samp>-X</samp> arguments
-to avoid confusion.
-</para>
-<html endspaces=" ">
-<a name="UDUnits"></a> <!&textndash; http://nco.sf.net/nco.html#UDUnits &textndash;>
-<a name="UDUnits2"></a> <!&textndash; http://nco.sf.net/nco.html#UDUnits2 &textndash;>
-</html>
-</section>
-<node name="UDUnits-Support" spaces=" "><nodename>UDUnits Support</nodename><nodenext spaces=" ">Rebasing Time Coordinate</nodenext><nodeprev spaces=" ">Auxiliary Coordinates</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>UDUnits Support </sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="633">UDUnits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="634">Unidata</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="635"><code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="636">attribute, <code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="637"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="638"><code>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="639"><code>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-Long options:
-<samp>--dimension <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>,&linebreak;
-<samp>--dmn <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</samp>&linebreak;
-</para></cartouche>
-<para>There is more than one way to hyperskin a cat.
-The <uref><urefurl>http://www.unidata.ucar.edu/packages/udunits</urefurl><urefdesc spaces=" ">UDUnits</urefdesc></uref> package
-provides a library which, if present, <acronym><acronymword>NCO</acronymword></acronym> uses to translate
-user-specified physical dimensions into the physical dimensions of data
-stored in netCDF files.
-Unidata provides UDUnits under the same terms as netCDF, so sites should
-install both.
-Compiling <acronym><acronymword>NCO</acronymword></acronym> with UDUnits support is currently optional but
-may become required in a future version of <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<para>Two examples suffice to demonstrate the power and convenience of UDUnits
-support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="640">MKS units</indexterm></cindex>
-First, consider extraction of a variable containing non-record
-coordinates with physical dimensions stored in MKS units.
-In the following example, the user extracts all wavelengths
-in the visible portion of the spectrum in terms of the units
-very frequently used in visible spectroscopy, microns:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -C -H -v wvl -d wvl,"0.4 micron","0.7 micron" in.nc
-wvl[0]=5e-07 meter
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="641"><code>units</code></indexterm></cindex>
-<para>The hyperslab returns the correct values because the <var>wvl</var> variable
-is stored on disk with a length dimension that UDUnits recognizes in the
-<code>units</code> attribute.
-The automagical algorithm that implements this functionality is worth
-describing since understanding it helps one avoid some potential
-pitfalls.
-First, the user includes the physical units of the hyperslab dimensions
-she supplies, separated by a simple space from the numerical values of
-the hyperslab limits.
-She encloses each coordinate specifications in quotes so that the shell
-does not break the <emph>value-space-unit</emph> string into separate
-arguments before passing them to <acronym><acronymword>NCO</acronymword></acronym>.
-Double quotes (<kbd>"foo"</kbd>) or single quotes (<kbd>'foo'</kbd>) are equally
-valid for this purpose.
-Second, <acronym><acronymword>NCO</acronymword></acronym> recognizes that units translation is requested
-because each hyperslab argument contains text characters and non-initial
-spaces.
-Third, <acronym><acronymword>NCO</acronymword></acronym> determines whether the <var>wvl</var> is dimensioned
-with a coordinate variable that has a <code>units</code> attribute.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="642">coordinate variable</indexterm></cindex>
-In this case, <var>wvl</var> itself is a coordinate variable.
-The value of its <code>units</code> attribute is <code>meter</code>.
-Thus <var>wvl</var> passes this test so UDUnits conversion is attempted.
-If the coordinate associated with the variable does not contain a
-<code>units</code> attribute, then <acronym><acronymword>NCO</acronymword></acronym> aborts.
-Fourth, <acronym><acronymword>NCO</acronymword></acronym> passes the specified and desired dimension strings
-(microns are specified by the user, meters are required by
-<acronym><acronymword>NCO</acronymword></acronym>) to the UDUnits library.
-Fifth, the UDUnits library that these dimension are commensurate
-and it returns the appropriate linear scaling factors to convert from
-microns to meters to <acronym><acronymword>NCO</acronymword></acronym>.
-If the units are incommensurate (i.e., not expressible in the same
-fundamental MKS units), or are not listed in the UDUnits database, then
-NCO aborts since it cannot determine the user&textrsquo;s intent.
-Finally, <acronym><acronymword>NCO</acronymword></acronym> uses the scaling information to convert the
-user-specified hyperslab limits into the same physical dimensions as
-those of the corresponding cooridinate variable on disk.
-At this point, <acronym><acronymword>NCO</acronymword></acronym> can perform a coordinate hyperslab using
-the same algorithm as if the user had specified the hyperslab without
-requesting units conversion.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="643"><code>units</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="644"><code>time</code></indexterm></cindex>
-<para>The translation and dimensional innterpretation of time coordinates
-shows a more powerful, and probably more common, UDUnits application.
-In this example, the user prints all data between <w>4 PM</w> and <w>7 PM</w>
-on <w>December 8</w>, 1999, from a variable whose time dimension is hours
-since the year 1900:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -u -H -C -v time_udunits -d time_udunits,"1999-12-08 \
- 16:00:0.0","1999-12-08 19:00:0.0" in.nc
-time_udunits[1]=876018 hours since 1900-01-01 00:00:0.0
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="645">stride</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="646">whitespace</indexterm></cindex>
-<para>Here, the user invokes the stride (<pxref label="Stride"><xrefnodename>Stride</xrefnodename></pxref>) capability to obtain
-every other timeslice.
-This is possible because the UDUnits feature is additive, not
-exclusive&textmdash;it works in conjunction with all other hyperslabbing
-(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) options and in all operators which support
-hyperslabbing.
-The following example shows how one might average data in a
-time period spread across multiple input files
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -d time,"1939-09-09 12:00:0.0","1945-05-08 00:00:0.0" \
- in1.nc in2.nc in3.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>Note that there is no excess whitespace before or after the individual
-elements of the <samp>-d</samp> argument.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="647">shell</indexterm></cindex>
-This is important since, as far as the shell knows, <samp>-d</samp> takes
-only <emph>one</emph> command-line argument.
-Parsing this argument into its component
-<code><var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]</code> elements
-(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) is the job of <acronym><acronymword>NCO</acronymword></acronym>.
-When unquoted whitespace is present between these elements, the shell
-passes <acronym><acronymword>NCO</acronymword></acronym> arugment fragments which will not parse as
-intended.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> implemented support for the UDUnits2 library with version
-3.9.2 (August, 2007).
-The
-<uref><urefurl>http://www.unidata.ucar.edu/software/udunits/udunits-2/udunits2.html</urefurl><urefdesc spaces="\n">UDUnits2</urefdesc></uref> package supports non-ASCII characters and logarithmic units.
-We are interested in user-feedback on these features.
-</para>
-<para>One aspect that deserves mention is that UDUnits, and thus
-<acronym><acronymword>NCO</acronymword></acronym>, supports run-time definition of the location of the
-relevant UDUnits databases.
-With UDUnits <w>version 1</w>, users may specify the directory which
-contains the UDUnits database, <file>udunits.dat</file>, via the
-<code>UDUNITS_PATH</code> environment variable.
-With UDUnits <w>version 2</w>, users may specify the UDUnits database file
-itself, <file>udunits2.xml</file>, via the <code>UDUNITS2_XML_PATH</code>
-environment variable.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># UDUnits1
-export UDUNITS_PATH='/unusual/location/share/udunits'
-# UDUnits2
-export UDUNITS2_XML_PATH='/unusual/location/share/udunits/udunits2.xml'
-</pre></example>
-<para>This run-time flexibility can enable the full functionality of
-pre-built binaries on machines with libraries in different locations.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="648">Climate and Forecast Metadata Convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="649"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<para>The <uref><urefurl>http://www.unidata.ucar.edu/packages/udunits</urefurl><urefdesc spaces=" ">UDUnits</urefdesc></uref>
-package documentation describes the supported formats of time
-dimensions.
-Among the metadata conventions that adhere to these formats are the
-<uref><urefurl>http://cf-pcmdi.llnl.gov</urefurl><urefdesc spaces=" \n">Climate and Forecast (CF) Conventions</urefdesc></uref> and the
-<uref><urefurl>http://ferret.wrc.noaa.gov/noaa_coop/coop_cdf_profile.html</urefurl><urefdesc spaces="\n">Cooperative Ocean/Atmosphere Research Data Service (COARDS) Conventions</urefdesc></uref>.
-The following <samp>-d arguments</samp> extract the same data using
-commonly encountered time dimension formats:
-<!-- c fxm add more formats here -->
-</para><example endspaces=" ">
-<pre xml:space="preserve">-d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
--d time,'1918-11-11 00:00:0.0','1939-09-09 00:00:0.0'
--d time,'1918-11-11T00:00:0.0Z','1939-09-09T00:00:0.0Z'
--d time,'1918-11-11','1939-09-09'
--d time,'1918-11-11','1939-9-9'
-</pre></example>
-<noindent></noindent>
-<para>All of these formats include at least one dash <kbd>-</kbd> in a
-non-leading character position (a dash in a leading character position
-is a negative sign).
-<acronym><acronymword>NCO</acronymword></acronym> assumes that a space, colon, or non-leading dash in a
-limit string indicates that a UDUnits units conversion is requested.
-Some date formats like YYYYMMDD that are valid in UDUnits are ambiguous
-to <acronym><acronymword>NCO</acronymword></acronym> because it cannot distinguish a purely numerical date
-(i.e., no dashes or text characters in it) from a coordinate or index
-value:
-</para><example endspaces=" ">
-<pre xml:space="preserve">-d time,1918-11-11 # Interpreted as the date November 11, 1918
--d time,19181111 # Interpreted as time-dimension index 19181111
--d time,19181111. # Interpreted as time-coordinate value 19181111.0
-</pre></example>
-<para>Hence, use the YYYY-MM-DD format rather than YYYYMMDD for dates.
-</para>
-<noindent></noindent>
-<para>As of version 4.0.0 (January, 2010), <acronym><acronymword>NCO</acronymword></acronym> supports some
-calendar attributes specified by the <acronym><acronymword>CF</acronymword></acronym> conventions.
-</para><table commandarg="asis" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="asis"><strong>Supported types:</strong> </itemformat></item>
-</tableterm><tableitem><para>"365_day"/"noleap", "360_day", "gregorian", "standard"
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis"><strong>Unsupported types:</strong> </itemformat></item>
-</tableterm><tableitem><para>"366_day"/"all_leap","proleptic_gregorian","julian","none"
-</para></tableitem></tableentry></table>
-<para>Unsupported types default to mixed Gregorian/Julian as defined by
-UDUnits.
-</para>
-<noindent></noindent> <para>An Example: Consider the following netCDF variable
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">variables:
- double lon_cal(lon_cal) ;
- lon_cal:long_name = "lon_cal" ;
- lon_cal:units = "days since 1964-2-28 0:0:0" ;
- lon_cal:calendar = "365_day" ;
-data:
- lon_cal = 1,2,3,4,5,6,7,8,9,10;
-</pre></example>
-<para><samp>ncks -v lon_cal -d lon_cal,'1964-3-1 0:00:0.0','1964-3-4 00:00:0.0'</samp>
-results in <code>lon_cal=1,2,3,4</code>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="650">MKS units</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="651">God</indexterm></cindex>
-<para>netCDF variables should always be stored with MKS (i.e., God&textrsquo;s) units,
-so that application programs may assume MKS dimensions apply to all
-input variables.
-The UDUnits feature is intended to alleviate some of the <acronym><acronymword>NCO</acronymword></acronym>
-user&textrsquo;s pain when handling MKS units.
-It connects users who think in human-friendly units (e.g.,
-miles, millibars, days) to extract data which are always stored in God&textrsquo;s
-units, MKS (e.g., meters, Pascals, seconds).
-The feature is not intended to encourage writers to store data in
-esoteric units (e.g., furlongs, pounds per square inch, fortnights).
-</para>
-<html endspaces=" ">
-<a name="time_rebase"></a> <!&textndash; http://nco.sf.net/nco.html#time_rebase &textndash;>
-<a name="rbs"></a> <!&textndash; http://nco.sf.net/nco.html#rbs &textndash;>
-</html>
-</section>
-<node name="Rebasing-Time-Coordinate" spaces=" "><nodename>Rebasing Time Coordinate</nodename><nodenext spaces=" ">Multiple Record Dimensions</nodenext><nodeprev spaces=" ">UDUnits Support</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Rebasing Time Coordinate</sectiontitle>
-<cartouche endspaces=" ">
-<para>Availability:
-<command>ncra</command>, <command>ncrcat</command>
-Short options: None&linebreak;
-</para></cartouche>
-
-<para>Time rebasing is invoked when numerous files share a common record
-coordinate, and the record coordinate units change among input files.
-The rebasing is performed automatically if and only if UDUnits is
-installed.
-Usually rebasing occurs when the recoordinate is a time-based variable,
-and times are recorded in units of a time-since-basetime, and the
-basetime changes from file to file.
-Since the output file can have only one unit (i.e., one basetime) for
-the record coordinate, <acronym><acronymword>NCO</acronymword></acronym>, in such cases, chooses the units
-of the first input file to be the units of the output file.
-It is necessary to &textldquo;rebase&textrdquo; all the input record variables to this
-output time unit in order for the output file to have the correct
-values.
-</para>
-<para>For example suppose the time coordinate is in hours and each day in
-January is stored in its own daily file.
-Each daily file records the temperature variable <code>tpt(time)</code>
-with an (unadjusted) <code>time</code> coordinate value between 0&textndash;23 hours,
-and uses the <code>units</code> attribute to advance the base time:
-</para><example endspaces=" ">
-<pre xml:space="preserve">file01.nc time:units="hours since 1990-1-1"
-file02.nc time:units="hours since 1990-1-2"
-...
-file31.nc time:units="hours since 1990-1-31"
-</pre></example>
-
-<example endspaces=" ">
-<pre xml:space="preserve">// Mean noontime temperature in January
-ncra -v tpt -d time,"1990-1-1 12:00:00","1990-1-31 23:59:59",24 \
- file??.nc noon.nc
-
-// Concatenate day2 noon through day3 noon records
-ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file01.nc file02.nc file03.nc noon.nc
-
-// Results: time is "re-based" to the time units in "file01.nc"
-time=36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, \
- 51, 52, 53, 54, 55, 56, 57, 58, 59 ;
-
-// If we repeat the above command but with only two input files...
-ncrcat -v tpt -d time,"1990-1-2 12:00:00","1990-1-3 11:59:59" \
- file02.nc file03 noon.nc
-
-// ...then output time coordinate is based on time units in "file02.nc"
-time = 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, \
- 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 ;
-</pre></example>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.2.1 (August, 2012), <acronym><acronymword>NCO</acronymword></acronym>
-automatically rebases not only the record coordinate (<code>time</code>, here)
-but also any bounds associated with the record coordinate (e.g.,
-<code>time_bnds</code>) (<pxref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="mrd"></a> <!&textndash; http://nco.sf.net/nco.html#mrd &textndash;>
-</html>
-</section>
-<node name="Multiple-Record-Dimensions" spaces=" "><nodename>Multiple Record Dimensions</nodename><nodenext spaces=" ">Missing Values</nodenext><nodeprev spaces=" ">Rebasing Time Coordinate</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Multiple Record Dimensions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="652">netCDF4</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="653"><code>--mrd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="654"><code>--multiple_record_dimensions</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability:
-<command>ncecat</command>, <command>ncpdq</command>
-Short options: None&linebreak;
-Long options: <samp>--mrd</samp>&linebreak;
-</para></cartouche>
-<para>The netCDF3 file format allows only one record dimension, and that
-dimension must be the first dimension (i.e., the least rapidly varying
-dimension) of any variable in which it appears.
-This imposes certain rules on how operators must perform operations
-that alter the ordering of dimensions or the number of record variables.
-The netCDF4 file format has no such restrictions.
-Files and variables may have any number of record dimensions in any
-order.
-This additional flexibility of netCDF4 can only be realized by
-selectively abandoning the constraints that would make operations
-behave completely consistently between netCDF3 and netCDF4 files.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> chooses, by default, to impose netCDF3-based constraints
-on netCDF4 files.
-This reduces the number of unanticipated consequences and keeps the
-operators functioning in a familiar way.
-Put another way, <acronym><acronymword>NCO</acronymword></acronym> limits production of additional record
-dimensions so processing netCDF4 files leads to the same results as
-processing netCDF4 files.
-Users can override this default with the <samp>--mrd</samp> (or
-<samp>--multiple_record_dimension</samp>) switch, which enables netCDF4
-variables to accumulate additional record dimensions.
-</para>
-<para>How can additional record dimensions be produced?
-Most commonly <command>ncecat</command> (in record-aggregate mode) defines a new
-leading record dimension.
-In netCDF4 files this becomes an additional record dimension unless the
-original record dimension is changed to a fixed dimension (as must be
-done in netCDF3 files).
-Also when <command>ncpdq</command> reorders dimensions it can preserve the
-&textldquo;record&textrdquo; property of record variables.
-<command>ncpdq</command> tries to define as a record dimension whichever
-dimension ends up first in a record variable, and, in netCDF4 files,
-this becomes an additional record dimension unless the original record
-dimension is changed to a fixed dimension (as must be done in netCDF3
-files).
-It it easier if <command>ncpdq</command> and <command>ncecat</command> do not increase
-the number of record dimensions in a variable so that is the default.
-Use <samp>--mrd</samp> to override this.
-</para>
-<html endspaces=" ">
-<a name="missing_value"></a> <!&textndash; http://nco.sf.net/nco.html#missing_value &textndash;>
-<a name="_FillValue"></a> <!&textndash; http://nco.sf.net/nco.html#_FillValue &textndash;>
-<a name="fll_val"></a> <!&textndash; http://nco.sf.net/nco.html#fll_val &textndash;>
-<a name="mss_val"></a> <!&textndash; http://nco.sf.net/nco.html#mss_val &textndash;>
-<a name="mss"></a> <!&textndash; http://nco.sf.net/nco.html#mss &textndash;>
-</html>
-</section>
-<node name="Missing-Values" spaces=" "><nodename>Missing Values</nodename><nodenext spaces=" ">Chunking</nodenext><nodeprev spaces=" ">Multiple Record Dimensions</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Missing values</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="655">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="656">data, missing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="657">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="658"><code>missing_value</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="659"><code>_FillValue</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
-Short options: None&linebreak;
-</para></cartouche>
-
-<para>The phrase <dfn>missing data</dfn> refers to data points that are missing,
-invalid, or for any reason not intended to be arithmetically processed
-in the same fashion as valid data.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="660">arithmetic operators</indexterm></cindex>
-The <acronym><acronymword>NCO</acronymword></acronym> arithmetic operators attempt to handle missing data in
-an intelligent fashion.
-There are four steps in the <acronym><acronymword>NCO</acronymword></acronym> treatment of missing data:
-</para><enumerate first="1" endspaces=" ">
-<listitem>
-<para>Identifying variables that may contain missing data.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> follows the convention that missing data should be stored
-with the <var>_FillValue</var> specified in the variable&textrsquo;s <code>_FillValue</code>
-attributes.
-The <emph>only</emph> way <acronym><acronymword>NCO</acronymword></acronym> recognizes that a variable <emph>may</emph>
-contain missing data is if the variable has a <code>_FillValue</code>
-attribute.
-In this case, any elements of the variable which are numerically equal
-to the <var>_FillValue</var> are treated as missing data.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> adopted the behavior that the default attribute name, if
-any, assumed to specify the value of data to ignore is <code>_FillValue</code>
-with version 3.9.2 (August, 2007).
-Prior to that, the <code>missing_value</code> attribute, if any, was assumed to
-specify the value of data to ignore.
-Supporting both of these attributes simultaneously is not practical.
-Hence the behavior <acronym><acronymword>NCO</acronymword></acronym> once applied to <var>missing_value</var> it
-now applies to any <var>_FillValue</var>.
-<acronym><acronymword>NCO</acronymword></acronym> now treats any <var>missing_value</var> as normal data
-<footnote spaces="\n"><para>The old functionality, i.e., where the ignored values are indicated by
-<code>missing_value</code> not <code>_FillValue</code>, may still be selected
-<emph>at <acronym><acronymword>NCO</acronymword></acronym> build time</emph> by compiling <acronym><acronymword>NCO</acronymword></acronym>
-with the token definition
-<!-- c @kbd{CPPFLAGS='-DNCO_MSS_VAL_SNG=missing_value'}. -->
-<kbd>CPPFLAGS='-UNCO_USE_FILL_VALUE'</kbd>.
-</para></footnote>.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="8" mergedindex="cp">ncrename</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="9" mergedindex="cp">ncatted</indexterm></findex>
-<para>It has been and remains most advisable to create both <code>_FillValue</code>
-and <code>missing_value</code> attributes with identical values in datasets.
-Many legacy datasets contain only <code>missing_value</code> attributes.
-<acronym><acronymword>NCO</acronymword></acronym> can help migrating datasets between these conventions.
-One may use <command>ncrename</command> (<pxref label="ncrename-netCDF-Renamer"><xrefnodename>ncrename netCDF Renamer</xrefnodename></pxref>) to
-rename all <code>missing_value</code> attributes to <code>_FillValue</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename -a .missing_value,_FillValue inout.nc
-</pre></example>
-<para>Alternatively, one may use
-<command>ncatted</command> (<pxref label="ncatted-netCDF-Attribute-Editor"><xrefnodename>ncatted netCDF Attribute Editor</xrefnodename></pxref>) to
-add a <code>_FillValue</code> attribute to all variables
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -O -a _FillValue,,o,f,1.0e36 inout.nc
-</pre></example>
-
-</listitem><listitem>
-<para>Converting the <var>_FillValue</var> to the type of the variable, if
-neccessary.
-</para>
-<para>Consider a variable <var>var</var> of type <var>var_type</var> with a
-<code>_FillValue</code> attribute of type <var>att_type</var> containing the
-value <var>_FillValue</var>.
-As a guideline, the type of the <code>_FillValue</code> attribute should be
-the same as the type of the variable it is attached to.
-If <var>var_type</var> equals <var>att_type</var> then <acronym><acronymword>NCO</acronymword></acronym>
-straightforwardly compares each value of <var>var</var> to
-<var>_FillValue</var> to determine which elements of <var>var</var> are to be
-treated as missing data.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="661">C language</indexterm></cindex>
-If not, then <acronym><acronymword>NCO</acronymword></acronym> converts <var>_FillValue</var> from
-<var>att_type</var> to <var>var_type</var> by using the implicit conversion rules
-<w>of C</w>, or, if <var>att_type</var> is <code>NC_CHAR</code>
-<footnote><para>For example, the <acronym><acronymword>DOE</acronymword></acronym> <acronym><acronymword>ARM</acronymword></acronym> program often
-uses <var>att_type</var> = <code>NC_CHAR</code> and <var>_FillValue</var> =
-<samp>-99999.</samp>.
-</para></footnote>, by typecasting the results of the <w>C function</w>
-<code>strtod(<var>_FillValue</var>)</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="662"><command>ncatted</command></indexterm></cindex>
-You may use the <acronym><acronymword>NCO</acronymword></acronym> operator <command>ncatted</command> to change the
-<code>_FillValue</code> attribute and all data whose data is
-<var>_FillValue</var> to a new value
-(<pxref label="ncatted-netCDF-Attribute-Editor"><xrefnodename>ncatted netCDF Attribute Editor</xrefnodename></pxref>).
-</para>
-</listitem><listitem>
-<para>Identifying missing data during arithmetic operations.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="663">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="664">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="665">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="666">execution time</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="667">arithmetic operators</indexterm></cindex>
-<para>When an <acronym><acronymword>NCO</acronymword></acronym> arithmetic operator processes a variable <var>var</var>
-with a <code>_FillValue</code> attribute, it compares each value of
-<var>var</var> to <var>_FillValue</var> before performing an operation.
-Note the <var>_FillValue</var> comparison imposes a performance penalty
-on the operator.
-Arithmetic processing of variables which contain the
-<code>_FillValue</code> attribute always incurs this penalty, even when
-none of the data are missing.
-Conversely, arithmetic processing of variables which do not contain the
-<code>_FillValue</code> attribute never incurs this penalty.
-In other words, do not attach a <code>_FillValue</code> attribute to a
-variable which does not contain missing data.
-This exhortation can usually be obeyed for model generated data, but it
-may be harder to know in advance whether all observational data will be
-valid or not.
-</para>
-</listitem><listitem>
-<para>Treatment of any data identified as missing in arithmetic operators.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="668"><command>nces</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="669"><command>ncra</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="670"><command>ncwa</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="671"><command>ncbo</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="672"><command>ncflint</command></indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> averagers (<command>ncra</command>, <command>nces</command>, <command>ncwa</command>)
-do not count any element with the value <var>_FillValue</var> towards the
-average.
-<command>ncbo</command> and <command>ncflint</command> define a <var>_FillValue</var> result
-when either of the input values is a <var>_FillValue</var>.
-Sometimes the <var>_FillValue</var> may change from file to file in a
-multi-file operator, e.g., <command>ncra</command>.
-<acronym><acronymword>NCO</acronymword></acronym> is written to account for this (it always compares a
-variable to the <var>_FillValue</var> assigned to that variable in the
-current file).
-Suffice it to say that, in all known cases, <acronym><acronymword>NCO</acronymword></acronym> does &textldquo;the
-right thing&textrdquo;.
-</para>
-<para>It is impossible to determine and store the correct result of a binary
-operation in a single variable.
-One such corner case occurs when both operands have differing
-<var>_FillValue</var> attributes, i.e., attributes with different
-numerical values.
-Since the output (result) of the operation can only have one
-<var>_FillValue</var>, some information may be lost.
-In this case, <acronym><acronymword>NCO</acronymword></acronym> always defines the output variable to have
-the same <var>_FillValue</var> as the first input variable.
-Prior to performing the arithmetic operation, all values of the second
-operand equal to the second <var>_FillValue</var> are replaced with the
-first <var>_FillValue</var>.
-Then the arithmetic operation proceeds as normal, comparing each element
-of each operand to a single <var>_FillValue</var>.
-Comparing each element to two distinct <var>_FillValue</var>&textrsquo;s would be
-much slower and would be no likelier to yield a more satisfactory
-answer.
-In practice, judicious choice of <var>_FillValue</var> values prevents any
-important information from being lost.
-</para></listitem></enumerate>
-
-<html endspaces=" ">
-<a name="chunking"></a> <!&textndash; http://nco.sf.net/nco.html#chunking &textndash;>
-<a name="cnk"></a> <!&textndash; http://nco.sf.net/nco.html#cnk &textndash;>
-<a name="cnk_sz"></a> <!&textndash; http://nco.sf.net/nco.html#cnk_sz &textndash;>
-<a name="chunk_size"></a> <!&textndash; http://nco.sf.net/nco.html#chunk_size &textndash;>
-</html>
-</section>
-<node name="Chunking" spaces=" "><nodename>Chunking</nodename><nodenext spaces=" ">Compression</nodenext><nodeprev spaces=" ">Missing Values</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Chunking</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="673"><code>--cnk_byt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="674"><code>--cnk_dmn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="675"><code>--cnk_map</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="676"><code>--cnk_min</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="677"><code>--cnk_plc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="678"><code>--cnk_scl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="679"><code>--chunk_byte</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="680"><code>--chunk_dimension</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="681"><code>--chunk_map</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="682"><code>--chunk_min</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="683"><code>--chunk_policy</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="684"><code>--chunk_scalar</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="685">chunking</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: none&linebreak;
-Long options:
-<samp>--cnk_byt <var>cnk_sz</var></samp>, <samp>--chunk_byte <var>cnk_sz</var></samp>&linebreak;
-<samp>--cnk_dmn <var>dmn_nm</var>,<var>cnk_sz</var></samp>,
-<samp>--chunk_dimension <var>dmn_nm</var>,<var>cnk_sz</var></samp>&linebreak;,
-<samp>--cnk_map <var>cnk_map</var></samp>, <samp>--chunk_map <var>cnk_map</var></samp>,&linebreak;
-<samp>--cnk_min <var>var_sz</var></samp>, <samp>--chunk_min <var>var_sz</var></samp>,&linebreak;
-<samp>--cnk_plc <var>cnk_plc</var></samp>, <samp>--chunk_policy <var>cnk_plc</var></samp>,&linebreak;
-<samp>--cnk_scl <var>cnk_sz</var></samp>, <samp>--chunk_scalar <var>cnk_sz</var></samp>&linebreak;
-</para></cartouche>
-
-<para>All netCDF4-enabled <acronym><acronymword>NCO</acronymword></acronym> operators that define variables
-support a plethora of chunksize options.
-Chunking can significantly accelerate or degrade read/write access
-to large datasets.
-Dataset chunking issues are described by <acronym><acronymword>THG</acronymword></acronym> and Unidata
-<uref><urefurl>http://www.hdfgroup.org/HDF5/doc/H5.user/Chunking.html</urefurl><urefdesc>here</urefdesc></uref>,
-<uref><urefurl>http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_why_it_matters</urefurl><urefdesc>here</urefdesc></uref>,
-and
-<uref><urefurl>http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes</urefurl><urefdesc>here</urefdesc></uref>.
-<acronym><acronymword>NCO</acronymword></acronym> authors are working on generalized algorithms and
-applications of chunking strategies (stay tuned for more in 2015).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="686">chunking policy</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="687">chunking map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="688">chunksize</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="689">blocksize</indexterm></cindex>
-<para>The <acronym><acronymword>NCO</acronymword></acronym> chunking implementation is designed to be flexible.
-Users control four aspects of the chunking implementation.
-These are the <dfn>chunking policy</dfn>, <dfn>chunking map</dfn>,
-<dfn>chunksize</dfn>, and <dfn>minimum chunksize</dfn>.
-The chunking policy determines <emph>which</emph> variables to chunk, and
-the chunking map determines how (with what exact sizes) to chunk
-those variables.
-These are high-level mechanisms that apply to an entire file and all
-variables and dimensions.
-The chunksize option allows per-dimension specification of sizes that
-will override the selected (or default) chunking map.
-</para>
-<para>The <var>var_sz</var> parameter is the minimum size in bytes (not elements)
-of variables to chunk.
-This threshold is intended to restrict use of chunking to variables
-for which it is efficient.
-By default this minimum variable size for chunking is twice the system
-blocksize (when available) and is <w>8192 bytes</w> otherwise.
-Users may set this to any value with the <samp>--cnk_min</samp> switch.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="690">hyperslab</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="10" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="691">packing</indexterm></cindex>
-<para>The chunking implementation is similar to a hybrid of the
-<command>ncpdq</command> packing policies
-(<pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>) and hyperslab
-specifications (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-Each aspect is intended to have a sensible default, so that many users
-only need to set one switch to obtain sensible chunking.
-Power users can tune chunking with the three switches in tandem to
-obtain optimal performance.
-</para>
-<para>By default, <acronym><acronymword>NCO</acronymword></acronym> preserves the chunking characteristics
-of the input file in the output file
-<footnote><para>This behavior became the default in November 2014 with
-<acronym><acronymword>NCO</acronymword></acronym> version 4.4.7.
-Prior versions would always use netCDF default chunking in the output
-file when no <acronym><acronymword>NCO</acronymword></acronym> chunking switches were activated, regardless
-of the chunking in the input file.</para></footnote>.
-In other words, preserving chunking requires no switches or user
-intervention.
-</para>
-<para>Users specify the desired chunking policy with the <samp>-P</samp> switch
-(or its long option equivalents, <samp>--cnk_plc</samp> and
-<samp>--chunk_policy</samp>) and its <var>cnk_plc</var> argument.
-As of August, 2014, six chunking policies are implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="692"><samp>all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="693"><samp>g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="694"><samp>g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="695"><samp>r1d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="696"><samp>xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="697"><samp>xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="698"><samp>cnk_all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="699"><samp>cnk_g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="700"><samp>cnk_g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="701"><samp>cnk_r1d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="702"><samp>cnk_xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="703"><samp>cnk_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="704"><samp>plc_all</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="705"><samp>plc_g2d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="706"><samp>plc_g3d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="707"><samp>plc_r1d</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="708"><samp>plc_xpl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="709"><samp>plc_xst</samp></indexterm></cindex>
-</para><table commandarg="dfn" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk All Variables</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all variables possible.
-For obvious reasons, scalar variables cannot be chunked.&linebreak;
-Alternate invocation: <code>ncchunk</code>&linebreak;
-<var>cnk_plc</var> key values: <samp>all</samp>, <samp>cnk_all</samp>, <samp>plc_all</samp>&linebreak;
-Mnemonic: All&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk Variables with at least Two Dimensions [<emph>default</emph>]</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all variables possible with at least two dimensions&linebreak;
-Alternate invocation: none&linebreak;
-<var>cnk_plc</var> key values: <samp>g2d</samp>, <samp>cnk_g2d</samp>, <samp>plc_g2d</samp>&linebreak;
-Mnemonic: <emph>G</emph>reater than or equal to <emph>2</emph> <emph>D</emph>imensions&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk Variables with at least Three Dimensions</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all variables possible with at least three dimensions&linebreak;
-Alternate invocation: none&linebreak;
-<var>cnk_plc</var> key values: <samp>g3d</samp>, <samp>cnk_g3d</samp>, <samp>plc_g3d</samp>&linebreak;
-Mnemonic: <emph>G</emph>reater than or equal to <emph>3</emph> <emph>D</emph>imensions&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk One-Dimensional Record Variables</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all 1-D record variables&linebreak;
-Alternate invocation: none&linebreak;
-Any specified (with <samp>--cnk_dmn</samp>) record dimension chunksizes will
-be applied only to 1-D record variables (and to no other variables).
-Other dimensions may be chunked with their own <samp>--cnk_dmn</samp> options
-that will apply to all variables.
-<var>cnk_plc</var> key values: <samp>r1d</samp>, <samp>cnk_r1d</samp>, <samp>plc_r1d</samp>&linebreak;
-Mnemonic: <emph>R</emph>ecord <emph>1</emph>-<emph>D</emph> variables&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk Variables Containing Explicitly Chunked Dimensions</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all variables possible that contain at least one
-dimension whose chunksize was explicitly set with the <samp>--cnk_dmn</samp> option.
-Alternate invocation: none&linebreak;
-<var>cnk_plc</var> key values: <samp>xpl</samp>, <samp>cnk_xpl</samp>, <samp>plc_xpl</samp>&linebreak;
-Mnemonic: E<emph>XPL</emph>icitly specified dimensions&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk Variables that are already Chunked</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk only variables that are already chunked in the input
-file.
-When used in conjunction with <samp>cnk_map=xst</samp> this option preserves
-and copies the chunking parameters from the input to the output file.
-Alternate invocation: none&linebreak;
-<var>cnk_plc</var> key values: <samp>xst</samp>, <samp>cnk_xst</samp>, <samp>plc_xst</samp>&linebreak;
-Mnemonic: E<emph>X</emph>i<emph>ST</emph>ing chunked variables&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunk Variables with <acronym><acronymword>NCO</acronymword></acronym> recommendations</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunk all variables according to <acronym><acronymword>NCO</acronymword></acronym> best
-practices.
-This is a virtual option that ensures the chunking policy is (in the
-subjective opinion of the authors) the best policy for typical usage.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.8 (February, 2015), this virtual policy
-implements <samp>map_rew</samp> for 3-D variables and <samp>map_lfp</samp> for all
-other variables.&linebreak;
-Alternate invocation: none&linebreak;
-<var>cnk_plc</var> key values: <samp>nco</samp>, <samp>cnk_nco</samp>, <samp>plc_nco</samp>&linebreak;
-Mnemonic: <emph>N</emph>et<emph>C</emph>DF<emph>O</emph>perator&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Unchunking</itemformat></item>
-</tableterm><tableitem><para>Definition: Unchunk all variables possible.
-The <acronym><acronymword>HDF5</acronymword></acronym> storge layer requires that record variables (i.e.,
-variables that contain at least one record dimension) must be chunked.
-Also variables that are compressed or use checksums must be chunked.
-Such variables cannot be unchunked.&linebreak;
-Alternate invocation: <code>ncunchunk</code>&linebreak;
-<var>cnk_plc</var> key values: <samp>uck</samp>, <samp>cnk_uck</samp>, <samp>plc_uck</samp>, <samp>unchunk</samp>&linebreak;
-Mnemonic: <emph>U</emph>n<emph>C</emph>hun<emph>K</emph>&linebreak;
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>Equivalent key values are fully interchangeable.
-Multiple equivalent options are provided to satisfy disparate needs
-and tastes of <acronym><acronymword>NCO</acronymword></acronym> users working with scripts and from the
-command line.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="710">chunking map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="711">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="712"><var>cnk_map</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="713"><code>-M <var>cnk_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="714"><code>--cnk_map <var>cnk_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="715"><code>--map <var>cnk_map</var></code></indexterm></cindex>
-<para>The chunking algorithms must know the chunksizes of each dimension of
-each variable to be chunked.
-The correspondence between the input variable shape and the chunksizes
-is called the <dfn>chunking map</dfn>.
-The user specifies the desired chunking map with the <samp>-M</samp> switch
-(or its long option equivalents, <samp>--cnk_map</samp> and
-<samp>--chunk_map</samp>) and its <var>cnk_map</var> argument.
-Eight chunking maps are currently implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="716"><samp>dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="717"><samp>scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="718"><samp>prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="719"><samp>lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="720"><samp>rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="721"><samp>xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="722"><samp>rew</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="723"><samp>nc4</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="724"><samp>cnk_dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="725"><samp>cnk_scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="726"><samp>cnk_prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="727"><samp>cnk_lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="728"><samp>cnk_rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="729"><samp>cnk_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="730"><samp>cnk_rew</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="731"><samp>cnk_nc4</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="732"><samp>map_dmn</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="733"><samp>map_scl</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="734"><samp>map_prd</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="735"><samp>map_lfp</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="736"><samp>map_rd1</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="737"><samp>map_xst</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="738"><samp>map_rew</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="739"><samp>map_nc4</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="740">Chris Barker</indexterm></cindex>
-</para><table commandarg="dfn" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Equals Dimension Size [<emph>default</emph>]</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksize defaults to dimension size.
-Explicitly specify chunksizes for particular dimensions with
-<samp>--cnk_dmn</samp> option.&linebreak;
-<var>cnk_map</var> key values: <samp>dmn</samp>, <samp>cnk_dmn</samp>, <samp>map_dmn</samp>&linebreak;
-Mnemonic: <emph>D</emph>i<emph>M</emph>e<emph>N</emph>sion&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Equals Dimension Size except Record Dimension</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksize equals dimension size except record dimension has size one.
-Explicitly specify chunksizes for particular dimensions with
-<samp>--cnk_dmn</samp> option.&linebreak;
-<var>cnk_map</var> key values: <samp>rd1</samp>, <samp>cnk_rd1</samp>, <samp>map_rd1</samp>&linebreak;
-Mnemonic: <emph>R</emph>ecord <emph>D</emph>imension size <emph>1</emph>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Equals Scalar Size Specified</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksize for all dimensions is set with the
-<samp>--cnk_scl</samp> option.&linebreak;
-<var>cnk_map</var> key values: <samp>xpl</samp>, <samp>cnk_xpl</samp>, <samp>map_xpl</samp>&linebreak;
-Mnemonic: E<emph>XPL</emph>icitly specified dimensions&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Product Matches Scalar Size Specified</itemformat></item>
-</tableterm><tableitem><para>Definition: The product of the chunksizes for each variable
-matches (approximately equals) the size specified with the
-<samp>--cnk_scl</samp> option.
-A dimension of size one is said to be <emph>degenerate</emph>.
-For a variable of rank <var>R</var> (i.e., with <var>R</var> non-degenerate
-dimensions), the chunksize in each non-degenerate dimension is the
-<var>R</var>th root of <var>cnk_scl</var>.&linebreak;
-<var>cnk_map</var> key values: <samp>prd</samp>, <samp>cnk_prd</samp>, <samp>map_prd</samp>&linebreak;
-Mnemonic: <emph>PR</emph>o<emph>D</emph>uct&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Lefter Product Matches Scalar Size Specified</itemformat></item>
-</tableterm><tableitem><para>Definition: The product of the chunksizes for each variable
-(approximately) equals the size specified with the <samp>--cnk_scl</samp>
-option.
-This is accomplished by using dimension sizes as chunksizes for the
-rightmost (most rapidly varying) dimensions, and then &textldquo;flexing&textrdquo; the
-chunksize of the leftmost (least rapidly varying) dimensions such that
-the product of all chunksizes matches the specified size.
-All dimensions to the left of and including the first record dimension
-define the left-hand side.
-This map was first proposed by Chris Barker.&linebreak;
-<var>cnk_map</var> key values: <samp>lfp</samp>, <samp>cnk_lfp</samp>, <samp>map_lfp</samp>&linebreak;
-Mnemonic: <emph>L</emph>e<emph>F</emph>ter <emph>P</emph>roduct&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Equals Existing Chunksize</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksizes are copied from the input to the output
-file for every variable that is chunked in the input file.
-Variables not chunked in the input file will be chunked with
-default mappings.&linebreak;
-<var>cnk_map</var> key values: <samp>xst</samp>, <samp>cnk_xst</samp>, <samp>map_xst</samp>&linebreak;
-Mnemonic: E<emph>X</emph>i<emph>ST</emph>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksize Balances 1D and (N-1)-D Access to N-D Variable</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksizes are chosen so that 1-D and (<var>(N-1)</var>)-D
-hyperslabs of <var>3</var>-D variables (e.g., point-timeseries orn
-latitude/longitude surfaces of 3-D fields) both require approximately
-the number of chunks.
-Hence their access time should be balanced.
-Russ Rew explains the motivation and derivation for this strategy
-<uref><urefurl>http://www.unidata.ucar.edu/blogs/developer/en/entry/chunking_data_choosing_shapes</urefurl><urefdesc spaces="\n">here</urefdesc></uref>.&linebreak;
-<var>cnk_map</var> key values: <samp>rew</samp>, <samp>cnk_rew</samp>, <samp>map_rew</samp>&linebreak;
-Mnemonic: Russ <emph>REW</emph>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksizes use netCDF4 defaults</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksizes are determined by the underlying netCDF library.
-All variables selected by the current chunking policy have their
-chunksizes determined by netCDF library defaults.
-The default algorithm netCDF uses to determine chunksizes has changed
-through the years, and thus depends on the netCDF library version.
-This map can be used to reset (portions of) previously chunked files to
-default chunking values.&linebreak;
-<var>cnk_map</var> key values: <samp>nc4</samp>, <samp>cnk_nc4</samp>, <samp>map_nc4</samp>&linebreak;
-Mnemonic: <emph>N</emph>et<emph>C</emph>DF<emph>4</emph>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Chunksizes use <acronym><acronymword>NCO</acronymword></acronym> recommendations</itemformat></item>
-</tableterm><tableitem><para>Definition: Chunksizes are determined by the currently recommended
-<acronym><acronymword>NCO</acronymword></acronym> map.
-This is a virtual option that ensures the chunking map is (in the
-subjective opinion of the authors) the best map for typical usage.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.8 (February, 2015), this virtual map
-calls <samp>map_rew</samp> for 3-D variables and <samp>map_lfp</samp> for all
-others.&linebreak;
-<var>cnk_map</var> key values: <samp>nco</samp>, <samp>cnk_nco</samp>, <samp>map_nco</samp>&linebreak;
-Mnemonic: <emph>N</emph>et<emph>C</emph>DF<emph>O</emph>perator&linebreak;
-</para>
-</tableitem></tableentry></table>
-<noindent></noindent>
-<para>It is possible to combine the above chunking map algorithms with
-user-specified per-dimension (though not per-variable) chunksizes that
-override specific chunksizes determined by the maps above.
-The user specifies the per-dimension chunksizes with the (equivalent)
-long options <samp>--cnk_dmn</samp> or <samp>--chunk_dimension</samp>).
-The option takes two comma-separated arguments,
-<var>dmn_nm</var>,<var>cnk_sz</var>, which are the dimension name and its
-chunksize, respectively.
-The <samp>--cnk_dmn</samp> option may be used as many times as necessary.
-</para>
-<para>The default behavior of chunking depends on several factors.
-As mentioned above, when no chunking options are explicitly specified by
-the user, then <acronym><acronymword>NCO</acronymword></acronym> preserves the chunking characteristics of
-the input file in the output file.
-This is equivalent to specifying both <var>cnk_plc</var> and <var>cnk_map</var>
-as &textldquo;existing&textrdquo;, i.e., <samp>--cnk_plc=xst --cnk_map=xst</samp>.
-If
-output netCDF4 files are chunked with the default behavior of the
-netCDF4 library.
-</para>
-<para>When any chunking parameter <emph>except</emph> <samp>cnk_plc</samp> or
-<samp>cnk_map</samp> is specified (such as <samp>cnk_dmn</samp> or
-<samp>cnk_sz_scl</samp>), then the &textldquo;existing&textrdquo; policy and map are
-retained and the output chunksizes are modified where necessary in
-accord with the user-specified parameter.
-When <samp>cnk_map</samp> is specified and <samp>cnk_plc</samp> is not, then
-<acronym><acronymword>NCO</acronymword></acronym> picks (what it thinks is) the optimal chunking policy.
-This has always been policy <samp>map_g2d</samp>.
-When <samp>cnk_plc</samp> is specified and <samp>cnk_map</samp> is not, then
-<acronym><acronymword>NCO</acronymword></acronym> picks (what it thinks is) the optimal chunking map.
-This has always been map <samp>map_rd1</samp>.
-</para>
-<para>To start afresh and return to netCDF4 chunking defaults, select
-<samp>cnk_map=nc4</samp>.
-</para>
-<html endspaces=" ">
-<a name="xmp_cnk"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_cnk &textndash;>
-<a name="xmp_chunk"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_chunk &textndash;>
-</html>
-<example endspaces=" ">
-<pre xml:space="preserve"># Simple chunking and unchunking
-ncks -O -4 --cnk_plc=all in.nc out.nc # Chunk in.nc
-ncks -O -4 --cnk_plc=unchunk in.nc out.nc # Unchunk in.nc
-
-# Chunk data then unchunk it, printing informative metadata
-ncks -O -4 -D 4 --cnk_plc=all ~/nco/data/in.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
-
-# Set total chunksize to 8192 B
-ncks -O -4 -D 4 --cnk_plc=all --cnk_byt=8192 ~/nco/data/in.nc ~/foo.nc
-
-# More complex chunking procedures, with informative metadata
-ncks -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_scl=8 dstmch90_clm.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_dmn lat,64 --cnk_dmn lon,128 dstmch90_clm.nc \
- ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=uck ~/foo.nc ~/foo.nc
-ncks -O -4 -D 4 --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-
-# Chunking works with all operators...
-ncap2 -O -4 -D 4 --cnk_scl=8 -S ~/nco/data/ncap2_tst.nco \
- ~/nco/data/in.nc ~/foo.nc
-ncbo -O -4 -D 4 --cnk_scl=8 -p ~/nco/data in.nc in.nc ~/foo.nc
-ncecat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
-ncflint -O -4 -D 4 --cnk_scl=8 ~/nco/data/in.nc ~/foo.nc
-ncpdq -O -4 -D 4 -P all_new --cnk_scl=8 -L 5 ~/nco/data/in.nc ~/foo.nc
-ncrcat -O -4 -D 4 -n 12,2,1 --cnk_dmn lat,32 \
- -p /data/zender/dstmch90 dstmch90_clm01.nc ~/foo.nc
-ncwa -O -4 -D 4 -a time --cnk_plc=g2d --cnk_map=rd1 --cnk_dmn lat,32 \
- --cnk_dmn lon,128 dstmch90_clm_0112.nc ~/foo.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="r1d"></a> <!&textndash; http://nco.sf.net/nco.html#r1d &textndash;>
-</html>
-<para>Chunking policy <samp>r1d</samp> changes the chunksize of 1-D record variables
-(and no other variables) to that specified (with <samp>--cnk_dmn</samp>)
-chunksize.
-Any specified record dimension chunksizes will be applied to 1-D
-record variables only.
-Other dimensions may be chunked with their own <samp>--cnk_dmn</samp> options
-that will apply to all variables.
-For example,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --cnk_plc=r1d --cnk_dmn=time,1000. in.nc out.nc
-</pre></example>
-<para>This sets <code>time</code> chunks to 1000 only in 1-D record variables.
-Without the <samp>r1d</samp> policy, <code>time</code> chunks would change in all
-variables.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="741">record dimension</indexterm></cindex>
-<para>It is appropriate to conclude by informing users about an aspect of
-chunking that may not be expected.
-Three types of variables are <emph>always</emph> chunked: Record variables,
-Deflated (compressed) variables, and Checksummed variables.
-Hence all variables that contain a record dimension are also chunked
-(since data must be chunked in all dimensions, not just one).
-Unless otherwise specified by the user, the other (fixed, non-record)
-dimensions of record variables are assigned default chunk sizes.
-The <acronym><acronymword>HDF5</acronymword></acronym> layer does all this automatically to optimize the
-on-disk variable/file storage geometry of record variables.
-Do not be surprised to learn that files created without any explicit
-instructions to activate chunking nevertheless contain chunked
-variables.
-</para>
-<html endspaces=" ">
-<a name="ppc"></a> <!&textndash; http://nco.sf.net/nco.html#ppc &textndash;>
-<a name="PPC"></a> <!&textndash; http://nco.sf.net/nco.html#PPC &textndash;>
-<a name="compression"></a> <!&textndash; http://nco.sf.net/nco.html#compression &textndash;>
-<a name="cmp"></a> <!&textndash; http://nco.sf.net/nco.html#cmp &textndash;>
-<a name="nsd"></a> <!&textndash; http://nco.sf.net/nco.html#nsd &textndash;>
-<a name="NSD"></a> <!&textndash; http://nco.sf.net/nco.html#NSD &textndash;>
-<a name="dsd"></a> <!&textndash; http://nco.sf.net/nco.html#dsd &textndash;>
-<a name="DSD"></a> <!&textndash; http://nco.sf.net/nco.html#DSD &textndash;>
-<a name="qnt"></a> <!&textndash; http://nco.sf.net/nco.html#qnt &textndash;>
-</html>
-</section>
-<node name="Compression" spaces=" "><nodename>Compression</nodename><nodenext spaces=" ">Deflation</nodenext><nodeprev spaces=" ">Chunking</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Compression</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="742"><code>--ppc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="743"><code>--precision_preserving_compression</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="744"><code>--quantize</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="745">lossy compression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="746">quantization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="747">rounding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="748">Huffman coding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="749"><command>gzip</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="750"><command>zlib</command></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>ncecat</command>, <command>nces</command>,
-<command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>, <command>ncra</command>,
-<command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: None&linebreak;
-Long options: <samp>--ppc <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>,&linebreak;
-<samp>--precision_preserving_compression <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>,&linebreak;
-<samp>--quantize <var>var1</var>[,<var>var2</var>[,...]]=<var>prc</var></samp>&linebreak;
-</para></cartouche>
-
-<para><acronym><acronymword>NCO</acronymword></acronym> implements or accesses four different compression
-algorithms, the standard lossless <acronym><acronymword>DEFLATE</acronymword></acronym> algorithm
-and three lossy compression algorithms.
-All four algorithms reduce the on-disk size of a dataset while
-sacrificing no (lossless) or a tolerable amount (lossy) of precision.
-First, <acronym><acronymword>NCO</acronymword></acronym> can access the lossless <acronym><acronymword>DEFLATE</acronymword></acronym> algorithm,
-a combination of Lempel-Ziv encoding and Huffman coding, algorithm on
-any netCDF4 dataset (<pxref label="Deflation"><xrefnodename>Deflation</xrefnodename></pxref>).
-Because it is lossless, this algorithm re-inflates deflated data to
-their full original precision.
-This algorithm is accessed via the <acronym><acronymword>HDF5</acronymword></acronym> library layer
-(which itself calls the <command>zlib</command> library also used by
-<command>gzip</command>), and is unavailable with netCDF3.
-</para>
-<para>The three lossy compression algorithms are Packing
-(<pxref label="Packed-data"><xrefnodename>Packed data</xrefnodename></pxref>), and two precision-preserving algorithms.
-Packing quantizes data of a higher precision type into a lower precision
-type (often <code>NC_SHORT</code>) that thus stores a fewer (though constant)
-number of bytes per value.
-Packed data almost unpacks into a (much) smaller dynamic range than
-the floating-point data can represent.
-The type-conversion and reduced dynamic range of the data allows packing
-to eliminate bits typically used to store an exponent, thus improving
-its packing efficiency.
-Packed data also can also be deflated for additional space savings.
-</para>
-<para>A limitation of packing is that unpacking data stored as integers
-into the linear range defined by <code>scale_factor</code> and
-<code>add_offset</code> rapidly loses precision outside of a narrow range of
-floating point values.
-Variables packed as <code>NC_SHORT</code>, for example, can represent only
-about 64000 discrete values in the range
-<math>-32768*scale_factor+add_offset</math> to
-<math>32767*scale_factor+add_offset</math>.
-The precision of packed data equals the value of <code>scale_factor</code>,
-and <code>scale_factor</code> is usually chosen to span the range of valid
-data, not to represent the intrinsic precision of the variable.
-In other words, the precision of packed data cannot be specified in
-advance because it depends on the range of values to quantize.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="751"><acronym><acronymword>PPC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="752"><acronym><acronymword>LSD</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="753">Least Significant Digit</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="754">quantization</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> implemented the final two lossy compression algorithms
-in version 4.4.8 (February, 2015).
-These are both <dfn>Precision-Preserving Compression</dfn> (<acronym><acronymword>PPC</acronymword></acronym>)
-algorithms and since standard terminology for precision is remarkably
-imprecise, so is our nomenclature.
-The operational definition of &textldquo;significant digit&textrdquo; in our precision
-preserving algorithms is that the exact value, before rounding or
-quantization, is within one-half the value of the decimal place occupied
-by the <dfn>Least Significant Digit</dfn> (<acronym><acronymword>LSD</acronymword></acronym>) of the rounded value.
-For example, the value <math>pi = 3.14</math> correctly represents the exact
-mathematical constant <var>pi</var> to three significant digits because the
-<acronym><acronymword>LSD</acronymword></acronym> of the rounded value <w>(i.e., 4)</w> is in the one-hundredths
-digit place, and the difference between the exact value and the rounded
-value is less than one-half of one one-hundredth, i.e.,
-(<math>3.14159265358979323844 - 3.14 = 0.00159 < 0.005</math>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="755">Number of Significant Digits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="756"><acronym><acronymword>NSD</acronymword></acronym></indexterm></cindex>
-<para>One <acronym><acronymword>PPC</acronymword></acronym> algorithm preserves the specified total
-<dfn>Number of Signifcant Digits</dfn> (<acronym><acronymword>NSD</acronymword></acronym>) of the value.
-For example there is only one significant digit in the weight of
-most &textldquo;eight-hundred pound gorillas&textrdquo; that you will encounter,
-i.e., so <math><var>nsd=1</var></math>.
-This is the most straightforward measure of precision, and thus
-<acronym><acronymword>NSD</acronymword></acronym> is the default <acronym><acronymword>PPC</acronymword></acronym> algorithm.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="757">Decimal Significant Digits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="758"><acronym><acronymword>DSD</acronymword></acronym></indexterm></cindex>
-<para>The other <acronym><acronymword>PPC</acronymword></acronym> algorithm preserves the number of
-<dfn>Decimal Significant Digits</dfn> (<acronym><acronymword>DSD</acronymword></acronym>), i.e., the number of
-significant digits following (positive, by convention) or preceding
-(negative) the decimal point.
-For example, &textldquo;0.008&textrdquo; and &textldquo;800&textrdquo; have, respectively, three and
-negative two digits digits following the decimal point, corresponding
-<math><var>dsd=3</var></math> and <math><var>dsd=-2</var></math>.
-</para>
-<para>The only justifiable <acronym><acronymword>NSD</acronymword></acronym> for a given value depends on
-intrinsic accuracy and error characteristics of the model or
-measurements, and not on the units with which the value is stored.
-The appropriate <acronym><acronymword>DSD</acronymword></acronym> for a given value depends on these
-intrinsic characteristics and, in addition, the units of storage.
-This is the fundamental difference between the <acronym><acronymword>NSD</acronymword></acronym> and
-<acronym><acronymword>DSD</acronymword></acronym> approaches.
-The eight-hundred pound gorilla always has <math><var>nsd=1</var></math> regardless
-of whether the value is store in pounds or in some other unit.
-<acronym><acronymword>DSD</acronymword></acronym> corresponding to this weight is <math><var>dsd=-2</var></math> if the
-value is store in pounds, <math><var>dsd=4</var></math> if stored in megapounds.
-</para>
-<para>Users may wish to express the precision to be preserved as either
-<acronym><acronymword>NSD</acronymword></acronym> or <acronym><acronymword>DSD</acronymword></acronym>.
-Invoke <acronym><acronymword>PPC</acronymword></acronym> with the long option <samp>--ppc var=prc</samp>, or give
-the same arguments to the synonyms
-<samp>--precision_preserving_compression</samp>, or to <samp>--quantize</samp>.
-Here <var>var</var> is the variable to quantize, and <var>prc</var> is the
-precision.
-The default algorithm assumes <var>prc</var> specifies <acronym><acronymword>NSD</acronymword></acronym>
-precision, e.g., <samp>T=2</samp> means <math><var>nsd=2</var></math>.
-Prepend <var>prc</var> with a decimal point to specify <acronym><acronymword>DSD</acronymword></acronym>
-precision, e.g., <samp>T=.2</samp> means <math><var>dsd=2</var></math>.
-<acronym><acronymword>NSD</acronymword></acronym> precision must be specified as a positive integer.
-<acronym><acronymword>DSD</acronymword></acronym> precision may be a positive or negative integer;
-and is specified as the negative <w>base 10</w> logarithm of the desired
-precision, in accord with common usage.
-For example, specifying <samp>T=.3</samp> or <samp>T=.-2</samp> tells the
-<acronym><acronymword>DSD</acronymword></acronym> algorithm to store only enough bits to preserve the
-value of <var>T</var> rounded to the nearest thousandth or hundred,
-respectively.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="759"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="760"><code>coordinates</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="761"><code>bounds</code> attribute</indexterm></cindex>
-<para>Setting <var>var</var> to <code>default</code> has the special meaning of applying
-the associated <acronym><acronymword>NSD</acronymword></acronym> or <acronym><acronymword>DSD</acronymword></acronym> algorithm to all floating
-point variables except coordinate variables.
-Variables <emph>not affected</emph> by <code>default</code> include integer and
-non-numeric atomic types, coordinates, and variables mentioned in
-the <code>coordinates</code> or <code>bounds</code> attribute of any variable.
-<acronym><acronymword>NCO</acronymword></acronym> applies <acronym><acronymword>PPC</acronymword></acronym> to coordinate variables only if
-those variables are explicitly specified (i.e., not with the
-<samp>default=<var>prc</var></samp> mechanism.
-<acronym><acronymword>NCO</acronymword></acronym> applies <acronym><acronymword>PPC</acronymword></acronym> to integer-type variables only if
-those variables are explicitly specified (i.e., not with the
-<samp>default=<var>prc</var></samp>, and only if the <acronym><acronymword>DSD</acronymword></acronym> algorithm is
-invoked with a negative <var>prc</var>.
-To prevent <acronym><acronymword>PPC</acronymword></acronym> from applying to certain non-coordinate
-variables (e.g., <code>gridcell_area</code> or <code>gaussian_weight</code>),
-explicitly specify a precision <w>exceeding 7</w> (for <code>NC_FLOAT</code>)
-<w>or 15</w> (for <code>NC_DOUBLE</code>) for those variables.
-Since these are the maximum representable precisions in decimal digits,
-<acronym><acronymword>NCO</acronymword></acronym> <emph>turns-off</emph> <acronym><acronymword>PPC</acronymword></acronym> (i.e., does nothing)
-when more precision is requested.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="762">bitmask</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="763">significand</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="764"><w><acronym><acronymword>IEEE</acronymword></acronym> 754</w></indexterm></cindex>
-<para>The time penalty for compressing and uncompressing data varies according
-to the algorithm.
-The Number of Significant Digit (<acronym><acronymword>NSD</acronymword></acronym>) algorithm quantizes by
-bitmasking, and employs no floating point math.
-The Decimal Significant Digit (<acronym><acronymword>DSD</acronymword></acronym>) algorithm quantizes by
-rounding, which does require floating point math.
-Hence <acronym><acronymword>NSD</acronymword></acronym> is likely faster than <acronym><acronymword>DSD</acronymword></acronym>, though
-the difference has not been measured.
-<acronym><acronymword>NSD</acronymword></acronym> creates a bitmask to alter the <dfn>significand</dfn> of
-<w><acronym><acronymword>IEEE</acronymword></acronym> 754</w> floating point data.
-The bitmask is one for all bits to be retained and zero or one for all
-bits to be ignored.
-The algorithm assumes that the number of binary digits (i.e., bits)
-necessary to represent a single base-10 digit is
-<math>ln(10)/ln(2) = 3.32</math>.
-The exact numbers of bits <var>Nbit</var> retained for single and double
-precision values are <math>ceil(3.32*<var>nsd</var>)+1</math> and
-<math>ceil(3.32*<var>nsd</var>)+2</math>, respectively.
-Once these <w>reach 23</w> <w>and 53</w>, respectively, bitmasking is
-completely ineffective.
-This occurs at <math><var>nsd</var>=6.3</math> <w>and 15.4</w>, respectively.
-</para>
-<para>The <acronym><acronymword>DSD</acronymword></acronym> algorithm, by contrast, uses rounding to remove
-undesired precision.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="765"><command>rint()</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="766">C99</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="767"><acronym><acronymword>IEEE</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="768">significand</indexterm></cindex>
-The rounding
-<footnote spaces="\n"><para>Rounding is performed by the internal math library <command>rint()</command>
-family of functions that were standardized in C99.
-The exact alorithm employed is
-<math><var>val</var> := rint(<var>scale</var>*<var>val</var>)/<var>scale</var></math> where
-<var>scale</var> is the nearest power <w>of 2</w> that exceeds
-<math>10**<var>prc</var></math>, and the inverse of <var>scale</var> is used when
-<math><var>prc</var> < 0</math>.
-For <math><var>ppc</var> = 3</math> or <math><var>ppc</var> = -2</math>, for example, we have
-<math><var>scale</var> = 1024</math> and <math><var>scale</var> = 1/128</math>.</para></footnote>
-zeroes the greatest number of significand bits consistent with
-the desired precision.
-</para>
-<para>To demonstrate the change in <acronym><acronymword>IEEE</acronymword></acronym> representation caused by
-<acronym><acronymword>PPC</acronymword></acronym> rounding algorithms, consider again the case of <var>pi</var>,
-represented as an <code>NC_FLOAT</code>.
-The <w><acronym><acronymword>IEEE</acronymword></acronym> 754</w> single precision representations of the exact
-value (3.141592...), the value with only three significant digits treated
-as exact (3.140000...), and the value as stored (3.140625) after
-<acronym><acronymword>PPC</acronymword></acronym>-rounding with either the <acronym><acronymword>NSD</acronymword></acronym> (<math><var>prc</var>=3</math>)
-or <acronym><acronymword>DSD</acronymword></acronym> (<math><var>prc</var>=2</math>) algorithm are, respectively,
-<ignore>
-ncks -O -v pi --ppc pi=1 ~/nco/data/in.nc ~/foo_nsd1.nc
-ncks -O -v pi --ppc pi=2 ~/nco/data/in.nc ~/foo_nsd2.nc
-ncks -O -v pi --ppc pi=3 ~/nco/data/in.nc ~/foo_nsd3.nc
-ncks -O -v pi --ppc pi=4 ~/nco/data/in.nc ~/foo_nsd4.nc
-ncks -O -v pi --ppc pi=5 ~/nco/data/in.nc ~/foo_nsd5.nc
-ncks -O -v pi --ppc pi=6 ~/nco/data/in.nc ~/foo_nsd6.nc
-ncks -O -v pi --ppc pi=7 ~/nco/data/in.nc ~/foo_nsd7.nc
-ncks -O -v pi --ppc pi=8 ~/nco/data/in.nc ~/foo_nsd8.nc
-ncks -O -v pi --ppc pi=9 ~/nco/data/in.nc ~/foo_nsd9.nc
-ncks -O -v pi --ppc pi=.2 ~/nco/data/in.nc ~/foo_dsd2.nc
-ncks -s %20.16e -C -H ~/foo_nsd.nc
-ncks -s %20.16e -C -H ~/foo_dsd.nc
-ccc --tst=bnr --flt_foo=3.14159265358979323844 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.14000000000000000000 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.00000000000000000000 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.12500000000000000000 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.14062500000000000000 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.14062500000000000000 2> /dev/null | grep "Binary of float"
-ccc --tst=bnr --flt_foo=3.14147949218750000000 2> /dev/null | grep "Binary of float"
-</ignore>
-</para><example endspaces=" ">
-<pre xml:space="preserve">S Exponent Fraction (Significand) Decimal Notes
-0 100000001 0010010000111111011011 # 3.14159265 Exact
-0 100000001 0010001111010111000011 # 3.14000000
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
-0 100000001 0010010000000000000000 # 3.14062500 DSD = 2
-</pre></example>
-<para>The string of trailing zero-bits in the rounded values facilitates
-byte-stream compression.
-Note that the <acronym><acronymword>NSD</acronymword></acronym> and <acronym><acronymword>DSD</acronymword></acronym> algorithms do not always
-produce results that are bit-for-bit identical, although they do in this
-particular case.
-</para>
-<html endspaces=" ">
-<a name="ppc_tbl_bit"></a> <!&textndash; http://nco.sf.net/nco.html#ppc_tbl_bit &textndash;>
-</html>
-<para>Reducing the preserved precision of <acronym><acronymword>NSD</acronymword></acronym>-rounding produces
-increasingly long strings of identical-bits amenable to compression:
-</para><example endspaces=" ">
-<pre xml:space="preserve">S Exponent Fraction (Significand) Decimal Notes
-0 100000001 0010010000111111011011 # 3.14159265 Exact
-0 100000001 0010010000111111011011 # 3.14159265 NSD = 8
-0 100000001 0010010000111111011010 # 3.14159262 NSD = 7
-0 100000001 0010010000111111011000 # 3.14159203 NSD = 6
-0 100000001 0010010000111111000000 # 3.14158630 NSD = 5
-0 100000001 0010010000111100000000 # 3.14154053 NSD = 4
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 3
-0 100000001 0010010000000000000000 # 3.14062500 NSD = 2
-0 100000001 0010000000000000000000 # 3.12500000 NSD = 1
-</pre></example>
-<para>The consumption of about <w>3 bits</w> per digit of base-10 precision is
-evident, as is the coincidence of a quantized value that greatly
-exceeds the mandated precision for <math><acronym><acronymword>NSD</acronymword></acronym> = 2</math>.
-Although the <acronym><acronymword>NSD</acronymword></acronym> algorithm generally masks some bits for all
-<math><var>nsd</var> <= 7</math> (for <code>NC_FLOAT</code>), compression algorithms like
-<acronym><acronymword>DEFLATE</acronymword></acronym> may need byte-size-or-greater (i.e., at least
-eight-bit) bit patterns before their algorithms can take advantage of
-of encoding such patterns for compression.
-Do not expect significantly enhanced compression from
-<math><var>nsd</var> > 5</math> (for <code>NC_FLOAT</code>) or <math><var>nsd</var> > 14</math> (for
-<code>NC_DOUBLE</code>).
-Clearly values stored as <code>NC_DOUBLE</code> (i.e., eight-bytes) are
-susceptible to much greater compression than <code>NC_FLOAT</code> for a given
-precision because their significands explicitly contain <w>53 bits</w>
-rather than <w>23 bits</w>.
-</para>
-<para>Maintaining non-biased statistical properties during lossy compression
-requires special attention.
-The <acronym><acronymword>DSD</acronymword></acronym> algorithm uses <code>rint()</code>, which rounds toward the
-nearest even integer.
-Thus <acronym><acronymword>DSD</acronymword></acronym> has no systematic bias.
-However, the <acronym><acronymword>NSD</acronymword></acronym> algorithm uses a bitmask technique
-susceptible to statistical bias.
-Zeroing all non-significant bits is guaranteed to produce numbers
-quantized to the specified tolerance, i.e., half of the decimal value
-of the position occupied by the <acronym><acronymword>LSD</acronymword></acronym>.
-However, always zeroing the non-significant bits results in quantized
-numbers that never exceed the exact number.
-This would produce a negative bias in statistical quantities (e.g., the
-average) subsequently derived from the quantized numbers.
-To avoid this bias, <acronym><acronymword>NSD</acronymword></acronym> rounds non-significant bits down (to
-zero) or up (to one) in an alternating fashion when processing array
-data.
-In general, the first element is rounded down, the second up, and so
-on.
-This results in a mean bias quite close to zero.
-The only exception is that the floating point value of zero is never
-quantized upwards.
-For simplicity, <acronym><acronymword>NSD</acronymword></acronym> always rounds scalars downwards.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="769"><acronym><acronymword>DEFLATE</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="770"><acronym><acronymword>HDF5</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="771"><command>gzip</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="772"><command>gunzip</command></indexterm></cindex>
-<para>Although <acronym><acronymword>NSD</acronymword></acronym> or <acronym><acronymword>DSD</acronymword></acronym> are different algorithms under
-the hood, they both replace the (unwanted) least siginificant bits of
-the <acronym><acronymword>IEEE</acronymword></acronym> significand with a string of consecutive zeroes.
-Byte-stream compression techniques, such as the <command>gzip</command>
-<acronym><acronymword>DEFLATE</acronymword></acronym> algorithm compression available in <acronym><acronymword>HDF5</acronymword></acronym>,
-always compress zero-strings more efficiently than random digits.
-The net result is netCDF files that utilize compression can be
-significantly reduced in size.
-This feature only works when the data are compressed, either internally
-(by netCDF) or externally (by another user-supplied mechanism).
-It is most straightfoward to compress data internally using the built-in
-compression and decompression supported by netCDF4.
-For convenience, <acronym><acronymword>NCO</acronymword></acronym> automatically activates file-wide
-Lempel-Ziv deflation (<pxref label="Deflation"><xrefnodename>Deflation</xrefnodename></pxref>) level one (i.e., <samp>-L 1</samp>)
-when <acronym><acronymword>PPC</acronymword></acronym> is invoked on any variable in a netCDF4 output file.
-This makes <acronym><acronymword>PPC</acronymword></acronym> easier to use effectively, since the user
-need not explicitly specify deflation.
-Any explicitly specified deflation (including no deflation, <samp>-L 0</samp>)
-will override the <acronym><acronymword>PPC</acronymword></acronym> deflation default.
-If the output file is a netCDF3 format, <acronym><acronymword>NCO</acronymword></acronym> will emit a
-message suggesting internal netCDF4 or external netCDF3 compression.
-netCDF3 files compressed by an external utility such as <command>gzip</command>
-accrue approximately the same benefits (shrinkage) as netCDF4, although
-with netCDF3 the user or provider must uncompress (e.g.,
-<command>gunzip</command>) the file before accessing the data.
-There is no benefit to rounding numbers and storing them in netCDF3
-files unless such custom compression/decompression is employed.
-Without that, one may as well maintain the undesired precision.
-</para>
-<para>The user accesses <acronym><acronymword>PPC</acronymword></acronym> through a single switch, <samp>--ppc</samp>,
-repeated as many times as necessary.
-To apply the <acronym><acronymword>NSD</acronymword></acronym> algorithm to variable <var>u</var> use, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -7 --ppc u=2 in.nc out.nc
-</pre></example>
-<para>The output file will preserve only two significant digits of <var>u</var>.
-The options <samp>-4</samp> or <samp>-7</samp> ensure a netCDF4-format output
-(regardless of the input file format) to support internal compression.
-It is recommended though not required to write netCDF4 files after
-<acronym><acronymword>PPC</acronymword></acronym>.
-For clarity the <samp>-4/-7</samp> switches are omitted in subsequent
-examples.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="773"><code>number_of_significant_digits</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="774"><code>least_significant_digit</code></indexterm></cindex>
-<acronym><acronymword>NCO</acronymword></acronym> attaches attributes that indicate the algorithm used and
-degree of precision retained for each variable affected by
-<acronym><acronymword>PPC</acronymword></acronym>.
-The <acronym><acronymword>NSD</acronymword></acronym> and <acronym><acronymword>DSD</acronymword></acronym> algorithms store the attributes
-<code>number_of_significant_digits</code> and <code>least_significant_digit</code>
-<footnote><para>The <command>nc3tonc4</command> tool by Jeff Whitaker inspired
-<acronym><acronymword>NCO</acronymword></acronym> to implement <acronym><acronymword>PPC</acronymword></acronym>.
-<acronym><acronymword>NCO</acronymword></acronym> implements a different <acronym><acronymword>DSD</acronymword></acronym> algorithm than
-<command>nc3tonc4</command>, and produces slightly different (not bit-for-bit)
-though self-consistent and equivalent results.
-<command>nc3tonc4</command> records the precision of its <acronym><acronymword>DSD</acronymword></acronym> algorithm
-in the attribute <code>least_significant_digit</code> and <acronym><acronymword>NCO</acronymword></acronym>
-does the same for consistency.</para></footnote>, respectively.
-</para>
-<para>It is safe to attempt <acronym><acronymword>PPC</acronymword></acronym> on input that has already been
-rounded.
-Variables can be made rounder, not sharper, i.e., variables cannot be
-&textldquo;un-rounded&textrdquo;.
-Thus <acronym><acronymword>PPC</acronymword></acronym> attempted on an input variable with an existing
-<acronym><acronymword>PPC</acronymword></acronym> attribute proceeds only if the new rounding level exceeds
-the old, otherwise no new rounding occurs (i.e., a &textldquo;no-op&textrdquo;), and the
-original <acronym><acronymword>PPC</acronymword></acronym> attribute is retained rather than replaced with
-the newer value of <var>prc</var>.
-</para>
-<para>To request, say, five significant digits (<math><var>nsd=5</var></math>) for all
-fields, except, say, wind speeds which are only known to integer values
-(<math><var>dsd=0</var></math>) in the supplied units, requires <samp>--ppc</samp> twice:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -4 --ppc default=5 --ppc u,v=.0 in.nc out.nc
-</pre></example>
-<para>To preserve five digits in all variables except coordinate variables
-and <var>u</var> and <var>v</var>, use the <samp>default</samp> option and separately
-specify the exceptions:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --ppc default=5 --ppc u,v=20 in.nc out.nc
-</pre></example>
-<para>The <samp>--ppc</samp> option may be specified any number of times to
-support varying precision types and levels, and each option may
-aggregate all the variables with the same precision
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --ppc p,w,z=5 --ppc q,RH=4 --ppc T,u,v=3 in.nc out.nc
-</pre></example>
-<para>Any <var>var</var> argument may be a regular expression.
-This simplifies generating lists of related variables:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --ppc Q.?=5 --ppc FS.?,FL.?=4 --ppc RH=.3 in.nc out.nc
-</pre></example>
-<para>Although <acronym><acronymword>PPC</acronymword></acronym>-rounding instantly reduces data precision,
-on-disk storage reduction only occurs once the data are compressed.
-</para>
-<html endspaces=" ">
-<a name="ppc_tbl_ffc"></a> <!&textndash; http://nco.sf.net/nco.html#ppc_tbl_ffc &textndash;>
-</html>
-<para>How can one be sure the lossy data are sufficiently precise?
-<acronym><acronymword>PPC</acronymword></acronym> preserves all significant digits of every value.
-The <acronym><acronymword>DSD</acronymword></acronym> algorithm uses floating point math to round each
-value optimally so that it has the maximum number of zeroed bits
-that preserve the specified precision.
-The <acronym><acronymword>NSD</acronymword></acronym> algorithm uses a theoretical approach (3.2 bits per
-base-10 digit), tuned and tested to ensure the <emph>worst</emph> case
-quantization error is less than half the value of the minimum increment
-in the least significant digit.
-</para>
-<para><emph>Note for Info users</emph>:
-The definition of error metrics relies heavily on mathematical
-expressions which cannot be easily represented in Info.
-<emph>See the <uref><urefurl>./nco.pdf</urefurl><urefdesc spaces=" ">printed manual</urefdesc></uref> for much more detailed
-and complete documentation of this subject.</emph>
-</para>
-<tex endspaces=" ">
-We define several metrics to quantify the quantization error.
-The mean error~$\pslavg$ and mean absolute error~$\pslmebs$ incurred in
-quantizing a variable from its true values~$\xxx_{\idx}$ to quantized
-values~$\qqq_{\idx}$ are, respectively,
-$$
-\pslavg = {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} ( \xxx_{\idx} - \qqq_{\idx} ) \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}\qquad\hbox{and}\qquad
-\pslmebs = {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} | \xxx_{\idx} - \qqq_{\idx} | \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}
-$$
-where $\mssflg_{\idx}$ is~1 unless $\xxx_{\idx}$~equals the missing
-value, $\mskflg_{\idx}$ is~1 unless $\xxx_{\idx}$~is masked, and
-$\wgt_{\idx}$~is the weight.
-The maximum and minimum errors $\pslmax$ and~$\pslmin$ are both signed
-$$
-\pslmax = {\rm max}(\xxx_{\idx} - \qqq_{\idx})\qquad\hbox{and}\qquad
-\pslmin = {\rm min}(\xxx_{\idx} - \qqq_{\idx})
-$$
-while the maximum and minimum absolute errors $\pslmabs$ are positive-definite.
-$$
-\pslmabs = {\rm max}|\xxx_{\idx} - \qqq_{\idx}| = {\rm max}(|\pslmax|,|\pslmin|)
-$$
-$$
-\pslmibs = {\rm min}|\xxx_{\idx} - \qqq_{\idx}| = {\rm min}(|\pslmax|,|\pslmin|)
-$$
-Typically $\pslmibs = 0$ for quantization, since many exact values
-need no quantization.
-Bit-shifting zeros into the least significant bits (<acronym><acronymword>LSB</acronymword></acronym>s)
-always underestimates true values so that $\pslmax = 0$.
-Conversely, bit-shifting ones into the <acronym><acronymword>LSB</acronymword></acronym>s always
-overestimates true values so that $\pslmin = 0$.
-Our <acronym><acronymword>NSD</acronymword></acronym> algorithm is balanced because it alternates
-bit-shifting zeroes and ones.
-Balanced algorithms should yield $\pslmax \approx -\pslmin$,
-$\pslmabs \approx \pslmibs$, and $\pslavg \approx 0$.
-
-The three most important error metrics for quantization are
-$\pslmabs$, $\pslmebs$, and~$\pslavg$.
-The upper bound (worst case) quantization performance is~$\pslmabs$.
-$\pslmebs$~measures the absolute mean accuracy of quantization, and does
-not allow positive and negative offsets to compensate eachother and
-conceal poor performance.
-The difference bewtween~$\pslmabs$ and~$\pslmebs$ indicates how much
-of an outlier the worst case is.
-The mean accuracy~$\pslavg$ indicates whether statistical properties of
-quantized numbers will accurately reflect the true values.
-</tex>
-
-<para>All three metrics are expressed in terms of the fraction of the ten&textrsquo;s
-place occupied by the <acronym><acronymword>LSD</acronymword></acronym>.
-If the <acronym><acronymword>LSD</acronymword></acronym> is the hundreds digit or the thousandths digit,
-then the metrics are fractions <w>of 100</w>, or <w>of 1/100</w>,
-respectively.
-<acronym><acronymword>PPC</acronymword></acronym> algorithms should produce maximum absolute errors no
-greater <w>than 0.5</w> in these units.
-If the <acronym><acronymword>LSD</acronymword></acronym> is the hundreds digit, then quantized versions of
-true values will be within fifty of the true value.
-It is much easier to satisfy this tolerance for a true value
-<w>of 100</w> (only 50% accuracy required) than <w>for 999</w>
-<w>(5% accuracy</w> required).
-Thus the minimum accuracy guaranteed for <math><var>nsd</var>=1</math> ranges
-from 5&textndash;50%.
-For this reason, the best and worst cast performance usually occurs for
-true values whose <acronym><acronymword>LSD</acronymword></acronym> value is close to one and nine,
-respectively.
-Of course most users prefer <math><var>prc</var> > 1</math> because accuracies
-increase exponentially with <var>prc</var>.
-Continuing the previous example to <math><var>prc</var>=2</math>,
-quantized versions of true values from 1000&textndash;9999 will also be
-<w>within 50</w> of the true value, i.e., have accuracies from 0.5&textndash;5%.
-In other words, only two significant digits are necessary to guarantee
-better <w>than 5%</w> accuracy in quantization.
-We recommend that dataset producers and users consider quantizing
-datasets with <math><var>nsd</var>=3</math>.
-This guarantees accuracy of 0.05&textndash;0.5% for individual values.
-Statistics computed from ensembles of quantized values will, assuming
-the mean error
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$\pslavg$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math><var>Emean</var></math>
-<clear name="flg" line=" flg"></clear>
-is small, have much better accuracy <w>than 0.5%</w>.
-This accuracy is the most that can be justified for many applications.
-</para>
-<para>To demonstrate these principles we conduct error analyses on an
-artificial, reproducible dataset, and on an actual dataset of
-observational analysis values.
-<footnote><para>The artificial dataset employed is one million evenly spaced
-values from 1.0&textndash;2.0.
-The analysis data are <math>N=13934592</math> values of the temperature field
-from the <acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>MERRA</acronymword></acronym> analysis of 20130601.</para></footnote>
-The table summarizes quantization accuracy based on the three metrics.
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">NSD</itemformat></item>
-</tableterm><tableitem><para>Number of Significant Digits.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">Emabs</itemformat></item>
-</tableterm><tableitem><para>Maximum absolute error.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">Emebs</itemformat></item>
-</tableterm><tableitem><para>Mean absolute error.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">Emean</itemformat></item>
-</tableterm><tableitem><para>Mean error.
-</para></tableitem></tableentry></table>
-
-<ignore>
-9.9692099683868690e+36f = 0 1111100 111100000000000000000000 NC_FILL_FLOAT
-2.3509885615147286E-38f = 0 0000000 111111111111111111111111 Recommended
-9.9692099683868690e+36 = 0 1000111100 11110000000000000000000000000000000000000000000000000 NC_FILL_DOUBLE
-2.84809453888921745415348453979E-306 = 0 0000000111 11111111111111111111111111111111111111111111111111111 Recommended
-
-2.22507385850720088902458687609E-308 = 0 0000000000 11111111111111111111111111111111111111111111111111111
-1.17549435082228737746264717725E-38 = 0 0111000000 11111111111111111111111111111111111111111111111111111
-1.17549435082228737746264717725E-38 = 0 0000000 100000000000000000000000
-
-# Accuracy tests
-
-# Satellite:
-ncks -3 -O -v T ${DATA}/hdf/MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.nc ~/foo_T.nc
-ncatted -a scale_factor,,d,, -a add_offset,,d,, ~/foo_T.nc
-ncap2 -O -v -s 'ppc=T;nsd1=ppc;nsd2=ppc;nsd3=ppc;nsd4=ppc;nsd5=ppc;nsd6=ppc;nsd7=ppc' ~/foo_T.nc ~/foo_ppc_in.nc
-# Artificial double
-ncap2 -O -v -s 'defdim("dmn",1000000);ppc=array(1.0,1.e-6,$dmn);nsd1=ppc;nsd2=ppc;nsd3=ppc;nsd4=ppc;nsd5=ppc;nsd6=ppc;nsd7=ppc' ~/nco/data/in.nc ~/foo_ppc_in.nc
-# Artificial float
-ncap2 -O -v -s 'defdim("dmn",1000000);ppc=float(array(1.0,1.e-6,$dmn));nsd1=ppc;nsd2=ppc;nsd3=ppc;nsd4=ppc;nsd5=ppc;nsd6=ppc;nsd7=ppc' ~/nco/data/in.nc ~/foo_ppc_in.nc
-
-# nc3tonc4
-nc3tonc4 -o --quantize=nsd1=1,nsd2=2,nsd3=3,nsd4=4,nsd5=5,nsd6=6,nsd7=7 --quiet=1 ~/foo_ppc_in.nc ~/foo_ppc_out.nc
-# DSD
-ncks -O -C --ppc nsd1=.1 --ppc nsd2=.2 --ppc nsd3=.3 --ppc nsd4=.4 --ppc nsd5=.5 --ppc nsd6=.6 --ppc nsd7=.7 ~/foo_ppc_in.nc ~/foo_ppc_out.nc
-# NSD
-ncks -O -C --ppc nsd1=1 --ppc nsd2=2 --ppc nsd3=3 --ppc nsd4=4 --ppc nsd5=5 --ppc nsd6=6 --ppc nsd7=7 ~/foo_ppc_in.nc ~/foo_ppc_out.nc
-
-# Generic rounding test:
-ncbo -O -C ~/foo_ppc_out.nc ~/foo_ppc_in.nc ~/foo_ppc_dff.nc
-ncbo -O -C -y dvd ~/foo_ppc_dff.nc ~/foo_ppc_in.nc ~/foo_ppc_rat.nc
-ncap2 -O -v -s 'nsd1*=10;nsd2*=100;nsd3*=1000;nsd4*=10000;nsd5*=100000;nsd6*=1000000;nsd7*=10000000' ~/foo_ppc_rat.nc ~/foo_ppc_rat_scl.nc
-ncwa -O -C -y avg ~/foo_ppc_rat_scl.nc ~/foo_ppc_avg.nc
-ncwa -O -C -y max ~/foo_ppc_rat_scl.nc ~/foo_ppc_max.nc
-ncwa -O -C -y min ~/foo_ppc_rat_scl.nc ~/foo_ppc_min.nc
-ncwa -O -C -y mabs ~/foo_ppc_rat_scl.nc ~/foo_ppc_mabs.nc
-ncwa -O -C -y mebs ~/foo_ppc_rat_scl.nc ~/foo_ppc_mebs.nc
-ncwa -O -C -y mibs ~/foo_ppc_rat_scl.nc ~/foo_ppc_mibs.nc
-</ignore>
-<example endspaces=" ">
-<pre xml:space="preserve">Artificial Data: N=1000000 values in [1.0,2.0) in steps of 1.0e-6
-Single-Precision Double-Precision Single-Precision
-NSD Emabs Emebs Emean Emabs Emebs Emean DSD Emabs Emebs Emean
- 1 0.31 0.11 4.1e-4 0.31 0.11 4.0e-4 1 0.30 0.11 -8.1e-4
- 2 0.39 0.14 6.8e-5 0.39 0.14 5.5e-5 2 0.39 0.14 -1.3e-4
- 3 0.49 0.17 1.0e-6 0.49 0.17 -5.5e-7 3 0.49 0.17 -2.0e-5
- 4 0.30 0.11 3.2e-7 0.30 0.11 -6.1e-6 4 0.30 0.11 5.1e-8
- 5 0.37 0.13 3.1e-7 0.38 0.13 -5.6e-6 5 0.38 0.13 2.6e-6
- 6 0.36 0.12 -4.4e-7 0.48 0.17 -4.1e-7 6 0.48 0.17 7.2e-6
- 7 0.00 0.00 0.0 0.30 0.10 1.5e-7 7 0.00 0.00 0.0
-
-Observational Analysis: N=13934592 values MERRA Temperature 20130601
-Single-Precision
-NSD Emabs Emebs Emean
- 1 0.31 0.11 2.4e-3
- 2 0.39 0.14 3.8e-4
- 3 0.49 0.17 -9.6e-5
- 4 0.30 0.11 2.3e-3
- 5 0.37 0.13 2.2e-3
- 6 0.36 0.13 1.7e-2
- 7 0.00 0.00 0.0
-</pre></example>
-<para>All results show that <acronym><acronymword>PPC</acronymword></acronym> quantization performs as expected.
-Absolute maximum errors <math><var>Emabs</var> < 0.5</math> for all <var>prc</var>.
-For <math>1 <= <var>prc</var> <= 6</math>, quantization results in comparable
-maximum absolute and mean absolute errors <var>Emabs</var> and <var>Emebs</var>,
-respectively.
-Mean errors <var>Emean</var> are orders of magnitude smaller because
-quantization produces over- and under-estimated values in balance.
-When <math><var>prc</var>=7</math>, quantization of single-precision values is
-ineffective, because all available bits are used to represent the
-maximum precision of seven digits.
-The maximum and mean absolute errors <var>Emabs</var> and <var>Emebs</var> are
-nearly identical across algorithms, precisions, and dataset types.
-This is consistent with both the artificial data and empirical data
-being random, and thus exercising equally strengths and weaknesses of
-the algorithms over the course of millions of input values.
-We generated artificial arrays with many different starting values
-and interval spacing and all gave qualitatively similar results.
-The results presented are the worst obtained.
-</para>
-<para>The artificial data has much smaller mean error <var>Emean</var> than the
-observational analysis.
-The reason why is unclear.
-It may be because the temperature field is concentrated in particular
-ranges of values (and associated quantization errors) prevalent on
-Earth, e.g., <math>200 < <var>T</var> < 320</math>.
-It is worth noting that the mean error <math><var>Emean</var> < 0.01</math> for
-<math>1 <= <var>prc</var> < 6</math>, and that <var>Emean</var> is typically at least
-two or more orders of magnitude less than <var>Emabs</var>.
-Thus quantized values with precisions as low as <math><var>prc</var>=1</math>
-still yield highly significant statistics by contemporary scientific
-standards.
-</para>
-<para>Testing shows that <acronym><acronymword>PPC</acronymword></acronym> quantization enhances compression of
-typical climate datasets.
-The degree of enhancement depends, of course, on the required
-precision.
-Model results are often computed as <code>NC_DOUBLE</code> then archived
-as <code>NC_FLOAT</code> to save space.
-<ignore>
-# Table entries
-fl=${DATA}/dstmch90/dstmch90_clm.nc
-fl=${DATA}/hdf/b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
-fl=${DATA}/hdf/MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.nc
-fl=${DATA}/hdf/OMI-Aura_L2-OMIAuraSO2_2012m1222-o44888_v01-00-2014m0107t114720.h5
-
-# ncks PPC only
-sz_rgn=`ls -l ${fl} | cut -d ' ' -f 5`
-fmt_fnc(){ gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}';}
-cmd="ls -l ${fl}";sz_new=`${cmd} | cut -d ' ' -f 5`;fmt_fnc ${sz_rgn} ${sz_new}
-
-sz_new=`bzip2 -1 -f ${fl};ls -l ${fl}.bz2 | cut -d ' ' -f 5`;bunzip2 ${fl}.bz2;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`bzip2 -9 -f ${fl};ls -l ${fl}.bz2 | cut -d ' ' -f 5`;bunzip2 ${fl}.bz2;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 0 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 9 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncpdq -O -7 -L 0 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncpdq -O -7 -L 1 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=7 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=6 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=5 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=3 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=2 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncks -O -7 -L 1 --ppc default=1 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncpdq -O -7 -L 1 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncpdq -O -7 -L 9 --ppc default=4 ${fl} ~/foo.nc;ls -l ~/foo.nc | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-sz_new=`ncpdq -O -3 --ppc default=4 ${fl} ~/foo.nc;bzip2 -1 -f ~/foo.nc;ls -l ~/foo.nc.bz2 | cut -d ' ' -f 5`;echo ${sz_rgn} ${sz_new} | gawk '{print "old=" $1/1000000 " MB, new=" $2/1000000 " MB, cmp=" 100*$2/$1 "%"}'
-</ignore>
-<html endspaces=" ">
-<a name="ppc_tbl_nc"></a> <!&textndash; http://nco.sf.net/nco.html#ppc_tbl_nc &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="775">Burrows-Wheeler algorithm</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="776"><command>bzip2</command></indexterm></cindex>
-This table summarizes the performance of lossless and lossy compression
-on two typical, or at least random, netCDF data files.
-The files were taken from representative model-simulated and
-satellite-retrieved datasets.
-Only floating point data were compressed.
-No attempt was made to compress integer-type variables as they occupy an
-insignificant fraction of every dataset.
-The columns are
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">Type </itemformat></item>
-</tableterm><tableitem><para>File-type:
-<kbd>N3</kbd> for netCDF <code>CLASSIC</code>,
-<kbd>N4</kbd> for <code>NETCDF4</code>),
-<kbd>N7</kbd> for <code>NETCDF4_CLASSIC</code> (which comprises netCDF3
-data types and structures with netCDF4 storage features like
-compression),
-<kbd>H4</kbd> for <acronym><acronymword>HDF4</acronymword></acronym>, and
-<kbd>H5</kbd> for <acronym><acronymword>HDF5</acronymword></acronym>.
-<kbd>N4/7</kbd> means results apply to both <kbd>N4</kbd> and <kbd>N7</kbd> filetypes.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">LLC</itemformat></item>
-</tableterm><tableitem><para>Type of lossless compression employed, if any.
-Bare numbers refer to the strength of the <acronym><acronymword>DEFLATE</acronymword></acronym> algorithm
-employed internally by netCDF4/<acronym><acronymword>HDF5</acronymword></acronym>, while numbers prefixed
-with <kbd>B</kbd> refer to the block size employed by the Burrows-Wheeler
-algorithm in <command>bzip2</command>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">PPC </itemformat></item>
-</tableterm><tableitem><para>Number of significant digits retained by the precision-preserving
-compression <acronym><acronymword>NSD</acronymword></acronym> algorithm.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">Pck </itemformat></item>
-</tableterm><tableitem><para><kbd>Y</kbd> if the default <command>ncpdq</command> packing algorithm (convert
-floating point types to <code>NC_SHORT</code>) was employed.
-A dash (<kbd>-</kbd>) indicates the associated compression feature
-was not employed.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">Size</itemformat></item>
-</tableterm><tableitem><para>Resulting filesize in <acronym><acronymword>MB</acronymword></acronym>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">%</itemformat></item>
-</tableterm><tableitem><para>Compression ratio, i.e., resulting filesize relative to original size,
-in percent.
-In some cases the original files is already losslessly compressed.
-The compression ratios reported are relative to the size of the original
-file as distributed, not as optimally losslessly compressed.
-</para></tableitem></tableentry></table>
-<ignore>
-# Lines trimmed from table as redundant/misleading
- N7 1 4 Y 7.9 22.9 ncpdq --ppc default=4
- N7 9 4 Y 7.7 22.1 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 6.3 18.1 ncpdq --ppc default=4 bzip2 -1
-
- N7 1 4 Y 26.3 21.9 ncpdq --ppc default=4
- N7 9 4 Y 25.6 21.4 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 20.9 17.4 ncpdq --ppc default=4 bzip2 -1
-
-N4/7 1 4 Y 133.6 54.7 ncpdq -L 1 --ppc default=4
-N4/7 9 4 Y 127.0 52.0 ncpdq -L 9 --ppc default=4
- N3 B1 4 Y 114.0 46.7 ncpdq --ppc default=4 bzip2 -1
-
- N4 1 4 Y 13.0 44.0 ncpdq -L 1 --ppc default=4
- N4 9 4 Y 12.5 42.5 ncpdq -L 9 --ppc default=4
-</ignore>
-<example endspaces=" ">
-<pre xml:space="preserve"># dstmch90_clm.nc
-Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 34.7 100.0 Original is not compressed
- N3 B1 - - 28.9 83.2 bzip2 -1
- N3 B9 - - 29.3 84.4 bzip2 -9
- N7 - - - 35.0 101.0
- N7 1 - - 28.2 81.3 -L 1
- N7 9 - - 28.0 80.8 -L 9
- N7 - - Y 17.6 50.9 ncpdq -L 0
- N7 1 - Y 7.9 22.8 ncpdq -L 1
- N7 1 7 - 28.2 81.3 --ppc default=7
- N7 1 6 - 27.9 80.6 --ppc default=6
- N7 1 5 - 25.9 74.6 --ppc default=5
- N7 1 4 - 22.3 64.3 --ppc default=4
- N7 1 3 - 18.9 54.6 --ppc default=3
- N7 1 2 - 14.5 43.2 --ppc default=2
- N7 1 1 - 10.0 29.0 --ppc default=1
-
-# b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h0.0001-01.nc
-Type LLC PPC Pck Size % Flags and Notes
- N3 - - - 119.8 100.0 Original is not compressed
- N3 B1 - - 84.2 70.3 bzip2 -1
- N3 B9 - - 84.8 70.9 bzip2 -9
- N7 - - - 120.5 100.7
- N7 1 - - 82.6 69.0 -L 1
- N7 9 - - 82.1 68.6 -L 9
- N7 - - Y 60.7 50.7 ncpdq -L 0
- N7 1 - Y 26.0 21.8 ncpdq -L 1
- N7 1 7 - 82.6 69.0 --ppc default=7
- N7 1 6 - 81.9 68.4 --ppc default=6
- N7 1 5 - 77.2 64.5 --ppc default=5
- N7 1 4 - 69.0 57.6 --ppc default=4
- N7 1 3 - 59.3 49.5 --ppc default=3
- N7 1 2 - 49.5 41.3 --ppc default=2
- N7 1 1 - 38.2 31.9 --ppc default=1
-
-# MERRA300.prod.assim.inst3_3d_asm_Cp.20130601.hdf
-Type LLC PPC Pck Size % Flags and Notes
- H4 5 - - 244.3 100.0 Original is compressed
- H4 B1 - - 244.7 100.1 bzip2 -1
- N4 5 - - 214.5 87.8
- N7 5 - - 210.6 86.2
- N4 B1 - - 215.4 88.2 bzip2 -1
- N4 B9 - - 214.8 87.9 bzip2 -9
- N3 - - - 617.1 252.6
-N4/7 - - - 694.0 284.0 -L 0
-N4/7 1 - - 223.2 91.3 -L 1
-N4/7 9 - - 207.3 84.9 -L 9
-N4/7 - - Y 347.1 142.1 ncpdq -L 0
-N4/7 1 - Y 133.6 54.7 ncpdq -L 1
-N4/7 1 7 - 223.1 91.3 --ppc default=7
-N4/7 1 6 - 225.1 92.1 --ppc default=6
-N4/7 1 5 - 221.4 90.6 --ppc default=5
-N4/7 1 4 - 201.4 82.4 --ppc default=4
-N4/7 1 3 - 185.3 75.9 --ppc default=3
-N4/7 1 2 - 150.0 61.4 --ppc default=2
-N4/7 1 1 - 100.8 41.3 --ppc default=1
-
-# OMI-Aura_L2-OMIAuraSO2_2012m1222-o44888_v01-00-2014m0107t114720.h5
-Type LLC PPC Pck Size % Flags and Notes
- H5 5 - - 29.5 100.0 Original is compressed
- H5 B1 - - 29.3 99.6 bzip2 -1
- N4 5 - - 29.5 100.0
- N4 B1 - - 29.3 99.6 bzip2 -1
- N4 B9 - - 29.3 99.4 bzip2 -9
- N4 - - - 50.7 172.3 -L 0
- N4 1 - - 29.8 101.3 -L 1
- N4 9 - - 29.4 99.8 -L 9
- N4 - - Y 27.7 94.0 ncpdq -L 0
- N4 1 - Y 12.9 43.9 ncpdq -L 1
- N4 1 7 - 29.7 100.7 --ppc default=7
- N4 1 6 - 29.7 100.8 --ppc default=6
- N4 1 5 - 27.3 92.8 --ppc default=5
- N4 1 4 - 23.8 80.7 --ppc default=4
- N4 1 3 - 20.3 69.0 --ppc default=3
- N4 1 2 - 15.1 51.2 --ppc default=2
- N4 1 1 - 9.9 33.6 --ppc default=1
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="777"><acronym><acronymword>NCAR</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="778"><acronym><acronymword>CAM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="779"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
-<para>A selective, per-variable approach to <acronym><acronymword>PPC</acronymword></acronym> yields the
-best balance of precision and compression yet requires the dataset
-producer to understand the intrinsic precision of each variable.
-Such a specification for a <acronym><acronymword>GCM</acronymword></acronym> dataset might look like this
-(using names for the <acronym><acronymword>NCAR</acronymword></acronym> <acronym><acronymword>CAM</acronymword></acronym> model):
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Be conservative on non-explicit quantities, so default=5
-# Some quantities deserve four significant digits
-# Many quantities, such as aerosol optical depths and burdens, are
-# highly uncertain and only useful to three significant digits.
-ncks -7 -O \
---ppc default=5 \
---ppc AN.?,AQ.?=4 \
---ppc AER.?,AOD.?,ARE.?,AW.?,BURDEN.?=3 \
-ncar_cam.nc ~/foo.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="dfl_lvl"></a> <!&textndash; http://nco.sf.net/nco.html#dfl_lvl &textndash;>
-<a name="dfl"></a> <!&textndash; http://nco.sf.net/nco.html#dfl &textndash;>
-<a name="lz"></a> <!&textndash; http://nco.sf.net/nco.html#lz &textndash;>
-<a name="lz77"></a> <!&textndash; http://nco.sf.net/nco.html#lz77 &textndash;>
-<a name="deflate"></a> <!&textndash; http://nco.sf.net/nco.html#deflate &textndash;>
-<a name="deflation"></a> <!&textndash; http://nco.sf.net/nco.html#deflation &textndash;>
-</html>
-</section>
-<node name="Deflation" spaces=" "><nodename>Deflation</nodename><nodenext spaces=" ">MD5 digests</nodenext><nodeprev spaces=" ">Compression</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Deflation</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="780"><code>-L</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="781"><code>--deflate</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="782"><code>--dfl_lvl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="783">Lempel-Ziv deflation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="784">compression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="785">deflation</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncecat</command>, <command>ncflint</command>, <command>ncks</command>, <command>ncpdq</command>,
-<command>ncra</command>, <command>ncrcat</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-L</samp>&linebreak;
-Long options: <samp>--dfl_lvl</samp>, <samp>--deflate</samp>&linebreak;
-</para></cartouche>
-
-<para>All <acronym><acronymword>NCO</acronymword></acronym> operators that define variables support the netCDF4
-feature of storing variables compressed with the lossless
-<acronym><acronymword>DEFLATE</acronymword></acronym> compression algorithm.
-<acronym><acronymword>DEFLATE</acronymword></acronym> combines the Lempel-Ziv encoding with Huffman coding.
-The specific version used by netCDF4/<acronym><acronymword>HDF5</acronymword></acronym> is that implemented
-in the <command>zlib</command> library used by <command>gzip</command>.
-Activate deflation with the <code>-L <var>dfl_lvl</var></code> short option (or
-with the same argument to the <samp>--dfl_lvl</samp> or <samp>--deflate</samp> long
-options).
-Specify the deflation level <var>dfl_lvl</var> on a scale from no deflation
-(<var>dfl_lvl = 0</var>) to maximum deflation (<var>dfl_lvl = 9</var>).
-Under the hood, this selects the compression blocksize.
-Minimal deflation (<var>dfl_lvl = 1</var>) achieves considerable storage
-compression with little time penalty.
-Higher deflation levels require more time for compression.
-File sizes resulting from minimal (<var>dfl_lvl = 1</var>) and maximal
-(<var>dfl_lvl = 9</var>) deflation levels typically differ by less
-<w>than 10%</w> in size.
-</para>
-<para>To compress an entire file using deflation, use
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -4 -L 0 in.nc out.nc # No deflation (fast, no time penalty)
-ncks -4 -L 1 in.nc out.nc # Minimal deflation (little time penalty)
-ncks -4 -L 9 in.nc out.nc # Maximal deflation (much slower)
-</pre></example>
-
-<para>Unscientific testing shows that deflation compresses typical climate
-datasets by 30-60%.
-Packing, a lossy compression technique available for all netCDF files
-(see <ref label="Packed-data"><xrefnodename>Packed data</xrefnodename></ref>), can easily compress files by 50%.
-Packed data may be deflated to squeeze datasets by about 80%:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -4 -L 1 in.nc out.nc # Minimal deflation (~30-60% compression)
-ncks -4 -L 9 in.nc out.nc # Maximal deflation (~31-63% compression)
-ncpdq in.nc out.nc # Standard packing (~50% compression)
-ncpdq -4 -L 9 in.nc out.nc # Deflated packing (~80% compression)
-</pre></example>
-<findex index="fn" spaces=" "><indexterm index="fn" number="11" mergedindex="cp">ncks</indexterm></findex>
-<para><command>ncks</command> prints deflation parameters, if any, to screen
-(<pxref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="md5"></a> <!&textndash; http://nco.sf.net/nco.html#md5 &textndash;>
-<a name="digest"></a> <!&textndash; http://nco.sf.net/nco.html#digest &textndash;>
-<a name="hash"></a> <!&textndash; http://nco.sf.net/nco.html#hash &textndash;>
-<a name="integrity"></a> <!&textndash; http://nco.sf.net/nco.html#integrity &textndash;>
-<a name="security"></a> <!&textndash; http://nco.sf.net/nco.html#security &textndash;>
-</html>
-</section>
-<node name="MD5-digests" spaces=" "><nodename>MD5 digests</nodename><nodenext spaces=" ">Buffer sizes</nodenext><nodeprev spaces=" ">Deflation</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>MD5 digests</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="786"><code>--md5_digest</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="787"><code>--md5_dgs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="788"><code>--md5_wrt_att</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="789"><code>--md5_write_attribute</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="790">integrity</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="791">security</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="792">digest</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="793">hash</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="794">MD5 digest</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability:
-<command>ncecat</command>, <command>ncks</command>, <command>ncrcat</command>&linebreak;
-Short options: &linebreak;
-Long options: <samp>--md5_dgs</samp>, <samp>--md5_digest</samp>, <samp>--md5_wrt_att</samp>, <samp>--md5_write_attribute</samp>&linebreak;
-</para></cartouche>
-
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.1.0 (April, 2012), <acronym><acronymword>NCO</acronymword></acronym>
-supports data integrity verification using the <acronym><acronymword>MD5</acronymword></acronym> digest
-algorithm.
-This support is currently implemented in <command>ncks</command> and in the
-multifile concantenators <command>ncecat</command> and <command>ncrcat</command>.
-Activate it with the <samp>--md5_dgs</samp> or <samp>--md5_digest</samp> long
-options.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.3 (July, 2013), <acronym><acronymword>NCO</acronymword></acronym>
-will write the <acronym><acronymword>MD5</acronymword></acronym> digest of each variable as an
-<code>NC_CHAR</code> attribute named <code>MD5</code>.
-This support is currently implemented in <command>ncks</command> and in the
-multifile concantenators <command>ncecat</command> and <command>ncrcat</command>.
-Activate it with the <samp>--md5_wrt_att</samp> or
-<samp>--md5_write_attribute</samp> long options.
-</para>
-<para>The behavior and verbosity of the <acronym><acronymword>MD5</acronymword></acronym> digest is
-operator-dependent.
-When activating <acronym><acronymword>MD5</acronymword></acronym> digests with <command>ncks</command> it is assumed
-that the user simply wishes to see the digest of every variable and this
-is done when the debugging level exceeds one.
-This incurs only the minor overhead of performing the hash algorithm for
-each variable read.
-<acronym><acronymword>MD5</acronymword></acronym> digests may be activated in both the one- and two-filename
-argument forms of <command>ncks</command>, which are used for printing and for
-sub-setting, respectively.
-The <acronym><acronymword>MD5</acronymword></acronym> digests are shown as a 32-character hexadecimal string
-in which each two characters represent one byte of the 16-byte digest:
-</para><example endspaces=" ">
-<pre xml:space="preserve">> ncks -O -D 2 -C --md5 -v md5_a,md5_abc ~/nco/data/in.nc
-...
-ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
-md5_a = 'a'
-ncks: INFO MD5(md5_abc) = 900150983cd24fb0d6963f7d28e17f72
-lev[0]=100 md5_abc[0--2]='abc'
-> ncks -O -D 2 -C -d lev,0 --md5 -v md5_a,md5_abc ~/nco/data/in.nc
-...
-ncks: INFO MD5(md5_a) = 0cc175b9c0f1b6a831c399e269772661
-md5_a = 'a'
-ncks: INFO MD5(md5_abc) = 0cc175b9c0f1b6a831c399e269772661
-lev[0]=100 md5_abc[0--0]='a'
-</pre></example>
-<para>In fact these examples demonstrate the validity of the hash algorithm
-since the <acronym><acronymword>MD5</acronymword></acronym> hashes of the strings &textldquo;a&textrdquo; and &textldquo;abc&textrdquo; are
-widely known.
-The second example shows that the hyperslab of variable <code>md5_abc</code>
-(= &textldquo;abc&textrdquo;) consisting of only its first letter (= &textldquo;a&textrdquo;) has the same
-hash as the variable <code>md5_a</code> (&textldquo;a&textrdquo;).
-This illustrates that <acronym><acronymword>MD5</acronymword></acronym> digests act only on variable data,
-not on metadata.
-</para>
-<para>When activating <acronym><acronymword>MD5</acronymword></acronym> digests with <command>ncecat</command> or
-<command>ncrcat</command> it is assumed that the user wishes to verify
-that every variable written to disk has the same <acronym><acronymword>MD5</acronymword></acronym> digest
-as when it is subsequently read from disk.
-This incurs the major additional overhead of reading in each variable
-after it is written and performing the hash algorithm again on that to
-compare to the original hash.
-Moreover, it is assumed that such operations are generally done
-&textldquo;production mode&textrdquo; where the user is not interested in actually
-examining the digests herself.
-The digests proceed silently unless the debugging level exceeds three:
-</para><example endspaces=" ">
-<pre xml:space="preserve">> ncecat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
-...
-ncecat: INFO MD5(wnd_spd) = bec190dd944f2ce2794a7a4abf224b28
-ncecat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
-> ncrcat -O -D 4 --md5 -p ~/nco/data in.nc in.nc ~/foo.nc | grep MD5
-...
-ncrcat: INFO MD5(wnd_spd) = 74699bb0a72b7f16456badb2c995f1a1
-ncrcat: INFO MD5 digests of RAM and disk contents for wnd_spd agree
-</pre></example>
-<para>Regardless of the debugging level, an error is returned when the digests
-of the variable read from the source file and from the output file
-disagree.
-</para>
-<para>These rules are evolving and as <acronym><acronymword>NCO</acronymword></acronym> pays more attention to
-data integrity.
-We welcome feedback and suggestions from users.
-</para>
-<html endspaces=" ">
-<a name="bfr_sz_hnt"></a> <!&textndash; http://nco.sf.net/nco.html#bfr_sz_hnt &textndash;>
-<a name="bfr"></a> <!&textndash; http://nco.sf.net/nco.html#bfr &textndash;>
-<a name="buffer"></a> <!&textndash; http://nco.sf.net/nco.html#buffer &textndash;>
-</html>
-</section>
-<node name="Buffer-sizes" spaces=" "><nodename>Buffer sizes</nodename><nodenext spaces=" ">RAM disks</nodenext><nodeprev spaces=" ">MD5 digests</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Buffer sizes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="795"><code>--bfr_sz_hnt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="796">Buffer sizes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="797">File buffers</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="798"><command>stat() system call</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="799">I/O block size</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="800">System calls</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: &linebreak;
-Long options: <samp>--bfr_sz_hnt</samp>, <samp>--buffer_size_hint</samp>&linebreak;
-</para></cartouche>
-
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.2.0 (May, 2012), <acronym><acronymword>NCO</acronymword></acronym>
-allows the user to request specific buffer sizes to allocate for reading
-and writing files.
-This buffer size determines how many system calls the netCDF layer must
-invoke to read and write files.
-By default, netCDF uses the preferred I/O block size returned as the
-<samp>st_blksize</samp> member of the <samp>stat</samp> structure returned by the
-<command>stat()</command> system call
-<footnote spaces="\n"><para>On modern Linux systems the block size defaults to <w>8192 B</w>.
-The GLADE filesystem at NCAR has a block size of <w>512 kB</w>.</para></footnote>.
-Otherwise, netCDF uses twice the system pagesize.
-Larger sizes can increase access speed by reducing the number of
-system calls netCDF makes to read/write data from/to disk.
-Because netCDF cannot guarantee the buffer size request will be met, the
-actual buffer size granted by the system is printed as an INFO
-statement.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Request 2 MB file buffer instead of default 8 kB buffer
-> ncks -O -D 3 --bfr_sz=2097152 ~/nco/data/in.nc ~/foo.nc
-...
-ncks: INFO nc__open() will request file buffer size = 2097152 bytes
-ncks: INFO nc__open() opened file with buffer size = 2097152 bytes
-...
-</pre></example>
-
-<html endspaces=" ">
-<a name="ram_all"></a> <!&textndash; http://nco.sf.net/nco.html#ram_all &textndash;>
-<a name="ram"></a> <!&textndash; http://nco.sf.net/nco.html#ram &textndash;>
-<a name="diskless"></a> <!&textndash; http://nco.sf.net/nco.html#diskless &textndash;>
-</html>
-</section>
-<node name="RAM-disks" spaces=" "><nodename>RAM disks</nodename><nodenext spaces=" ">Packed data</nodenext><nodeprev spaces=" ">Buffer sizes</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>RAM disks</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="801"><code>--ram_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="802"><code>--create_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="803"><code>--open_ram</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="804"><code>--diskless_all</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="805"><acronym><acronymword>RAM</acronymword></acronym> disks</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="806"><acronym><acronymword>RAM</acronymword></acronym> files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="807"><code>NC_DISKLESS</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="808">diskless files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="809">memory requirements</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="810">memory available</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="811"><acronym><acronymword>RAM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="812">swap space</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="813">peak memory usage</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: &linebreak;
-Long options: <samp>--ram_all</samp>, <samp>--create_ram</samp>, <samp>--open_ram</samp>,
-<samp>--diskless_all</samp>&linebreak;
-</para></cartouche>
-
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.2.1 (August, 2012), <acronym><acronymword>NCO</acronymword></acronym> supports
-the use of diskless files, aka <acronym><acronymword>RAM</acronymword></acronym> disks, for file access and creation.
-Two independent switches, <samp>--open_ram</samp> and <samp>--create_ram</samp>,
-control this feature.
-Before describing the specifics of these switches, we describe why many
-<acronym><acronymword>NCO</acronymword></acronym> operations will not benefit from them.
-Essentially, reading/writing from/to <acronym><acronymword>RAM</acronymword></acronym> rather than disk only hastens
-the task when reads/writes to disk are avoided.
-Most <acronym><acronymword>NCO</acronymword></acronym> operations are simple enough that they require a
-single read-from/write-to disk for every block of input/output.
-Diskless access does not change this, but it does add an extra
-read-from/write-to RAM.
-However this extra <acronym><acronymword>RAM</acronymword></acronym> write/read does avoid contention for limited
-system resources like disk-head access.
-Operators which may benefit from <acronym><acronymword>RAM</acronymword></acronym> disks include <command>ncwa</command>, which
-may need to read weighting variables multiple times, the multi-file
-operators <command>ncra</command>, <command>ncrcat</command>, and <command>ncecat</command>,
-which may try to write output at least once per input file, and
-<command>ncap2</command> scripts which may be arbitrarily long and convoluted.
-</para>
-<para>The <samp>--open_ram</samp> switch causes input files to copied to <acronym><acronymword>RAM</acronymword></acronym> when
-opened.
-All further metadata and data access occurs in <acronym><acronymword>RAM</acronymword></acronym> and thus avoids
-access time delays caused by disk-head movement.
-Usually input data is read at most once so it is unlikely that
-requesting input files be stored in <acronym><acronymword>RAM</acronymword></acronym> will save much time.
-The likeliest exceptions are files that are accessed numerous times,
-such as those analyzed extensively analyzed by <command>ncap2</command>.
-</para>
-<para>Invoking <samp>--open_ram</samp>, <samp>--ram_all</samp>, or <samp>--diskless_all</samp>
-uses much more system memory.
-To copy the input file to <acronym><acronymword>RAM</acronymword></acronym> increases the sustained
-memory use by exactly the on-disk filesize of the input file, i.e.,
-<math>MS += FT</math>.
-For large input files this can be a huge memory burden that starves
-the rest of the <acronym><acronymword>NCO</acronymword></acronym> analysis of sufficient <acronym><acronymword>RAM</acronymword></acronym>.
-To be safe, use <samp>--open_ram</samp>, <samp>--ram_all</samp>, or
-<samp>--diskless_all</samp> only on files that are much (say at least a factor
-of four) smaller than your available system <acronym><acronymword>RAM</acronymword></acronym>.
-See <ref label="Memory-Requirements"><xrefnodename>Memory Requirements</xrefnodename></ref> for further details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="814"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
-<para>The <samp>--create_ram</samp> switch causes output files to be created in RAM,
-rather than on disk.
-These files are copied to disk only when closed, i.e., when the
-operator completes.
-Creating files in <acronym><acronymword>RAM</acronymword></acronym> may save time, especially with <command>ncap2</command>
-computations that are iterative, e.g., loops, and for multi-file
-operators that write output every record (timestep) or file.
-RAM files provide many of the same benefits as <acronym><acronymword>RAM</acronymword></acronym> variables in such
-cases (<pxref label="RAM-variables"><xrefnodename>RAM variables</xrefnodename></pxref>).
-</para>
-<para>Two switches, <samp>--ram_all</samp> and <samp>--diskless_all</samp>, are convenient
-shortcuts for specifying both <samp>--create_ram</samp> and
-<samp>--diskless_ram</samp>.
-Thus
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks in.nc out.nc # Default: Open in.nc on disk, write out.nc to disk
-ncks --open_ram in.nc out.nc # Open in.nc in RAM, write out.nc to disk
-ncks --create_ram in.nc out.nc # Create out.nc in RAM, write to disk
-# Open in.nc in RAM, create out.nc in RAM, then write out.nc to disk
-ncks --open_ram --create_ram in.nc out.nc
-ncks --ram_all in.nc out.nc # Same as above
-ncks --diskless_all in.nc out.nc # Same as above
-</pre></example>
-
-<para>It is straightforward to demonstrate the efficacy of <acronym><acronymword>RAM</acronymword></acronym> disks.
-For <acronym><acronymword>NASA</acronymword></acronym> we constructed a test that employs <command>ncecat</command>
-an arbitrary number (set to one hundred thousand) of files are all
-symbolically linked to the same file.
-Everything is on the local filesystem (not <acronym><acronymword>DAP</acronymword></acronym>).
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Create symbolic links for benchmark
-cd ${DATA}/nco # Do all work here
-for idx in {1..99999}; do
- idx_fmt=`printf "%05d" ${idx}`
- /bin/ln -s ${DATA}/nco/LPRM-AMSR_E_L3_D_SOILM3_V002-20120512T111931Z_20020619.nc \
- ${DATA}/nco/${idx_fmt}.nc
-done
-# Benchmark time to ncecat one hundred thousand files
-time ncecat --create_ram -O -u time -v ts -d Latitude,40.0 \
- -d Longitude,-105.0 -p ${DATA}/nco -n 99999,5,1 00001.nc ~/foo.nc
-</verbatim>
-</example>
-<para>Run normally on a laptop in 201303, this completes in <w>21 seconds</w>.
-The <samp>--create_ram</samp> reduces the elapsed time to <w>9 seconds</w>.
-Some of this speed may be due to using symlinks and caching.
-However, the efficacy of <samp>--create_ram</samp> is clear.
-Placing the output file in <acronym><acronymword>RAM</acronymword></acronym> avoids thousands of disk writes.
-It is not unreasonable to for <acronym><acronymword>NCO</acronymword></acronym> to process a million files
-like this in a few minutes.
-However, there is no substitute for benchmarking with real files.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="815">temporary output files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="816">temporary files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="817"><code>--no_tmp_fl</code></indexterm></cindex>
-<para>A completely independent way to reduce time spent writing files is
-to refrain from writing temporary output files.
-This is accomplished with the <samp>--no_tmp_fl</samp> switch
-(<pxref label="Temporary-Output-Files"><xrefnodename>Temporary Output Files</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="pck"></a> <!&textndash; http://nco.sf.net/nco.html#pck &textndash;>
-<a name="pack"></a> <!&textndash; http://nco.sf.net/nco.html#pack &textndash;>
-</html>
-</section>
-<node name="Packed-data" spaces=" "><nodename>Packed data</nodename><nodenext spaces=" ">Operation Types</nodenext><nodeprev spaces=" ">RAM disks</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Packed data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="818">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="819">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="820"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="821"><code>scale_factor</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="822"><code>missing_value</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="823"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="824"><command>pack(x)</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="825"><command>unpack(x)</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="826"><code>--hdf_upk</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="827"><code>--hdf_unpack</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
-Short options: None&linebreak;
-Long options: <samp>--hdf_upk</samp>, <samp>--hdf_unpack</samp>&linebreak;
-</para></cartouche>
-
-<para>The phrase <dfn>packed data</dfn> refers to data which are stored in the
-standard netCDF3 packing format which employs a lossy algorithm.
-See <ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref> for a description of deflation, a
-lossless compression technique available with netCDF4 only.
-Packed data may be deflated to save additional space.
-</para>
-<unnumberedsubsec spaces=" "><sectiontitle>Packing Algorithm</sectiontitle>
-<para><dfn>Packing</dfn>
-The standard netCDF packing algorithm (described
-<uref><urefurl>http://www.unidata.ucar.edu/software/netcdf/docs/netcdf/Attribute-Conventions.html</urefurl><urefdesc spaces=" ">here</urefdesc></uref>)
-produces data with
-the same dynamic range as the original but which requires no more than
-half the space to store.
-Like all packing algorithms, it is <emph>lossy</emph>.
-The packed variable is stored (usually) as type <code>NC_SHORT</code>
-with the two attributes required to unpack the variable,
-<code>scale_factor</code> and <code>add_offset</code>, stored at the original
-(unpacked) precision of the variable
-<footnote><para>Although not a part of the standard, <acronym><acronymword>NCO</acronymword></acronym> enforces
-the policy that the <code>_FillValue</code> attribute, if any, of a packed
-variable is also stored at the original precision.</para></footnote>.
-Let <var>min</var> and <var>max</var> be the minimum and maximum values
-<w>of <var>x</var>.</w>
-<tex endspaces=" ">
-$$
-\rm
-\eqalign{\hbox{scale\_factor} &= (\hbox{max}-\hbox{min})/\hbox{ndrv}\cr
-\hbox{add\_offset} &= (\hbox{min}+\hbox{max})/2\cr
-\hbox{pck} &= (\hbox{upk}-\hbox{add\_offset})/\hbox{scale\_factor}\cr
- &= {\hbox{ndrv}\times[\hbox{upk}-(\hbox{min}+\hbox{max})/2]\over\hbox{max}-\hbox{min}}\cr}
-$$
-</tex>
-</para><sp value="1" line=" 1"></sp>
-<para><var>scale_factor</var> = (<var>max</var>-<var>min</var>)/<var>ndrv</var>&linebreak;
-<var>add_offset</var> = 0.5*(<var>min</var>+<var>max</var>)&linebreak;
-<var>pck</var> = (<var>upk</var>-<var>add_offset</var>)/<var>scale_factor</var> = (<var>upk</var>-0.5*(<var>min</var>+<var>max</var>))*<var>ndrv</var>/(<var>max</var>-<var>min</var>)&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<para>where <var>ndrv</var> is the number of discrete representable values for
-given type of packed variable.
-The theoretical maximum value for <var>ndrv</var> is two raised to the
-number of bits used to store the packed variable.
-Thus if the variable is packed into type <code>NC_SHORT</code>, a two-byte
-datatype, then there are at most <math>2^{16} = 65536</math> distinct values
-representable.
-In practice, the number of discretely representible values is taken
-to be two less than the theoretical maximum.
-This leaves space for a missing value and solves potential problems with
-rounding that may occur during the unpacking of the variable.
-Thus for <code>NC_SHORT</code>, <math>ndrv = 65536 - 2 = 65534</math>.
-Less often, the variable may be packed into type <code>NC_CHAR</code>,
-where <math>ndrv = 2^{8} - 2 = 256 - 2 = 254</math>, or type <code>NC_INT</code> where
-where <math>ndrv = 2^{32} - 2 = 4294967295 - 2 = 4294967293</math>.
-One useful feature of (lossy) netCDF packing algorithm is that
-additional, loss-less packing algorithms perform well on top of it.
-</para>
-<html endspaces=" ">
-<a name="upk"></a> <!&textndash; http://nco.sf.net/nco.html#upk &textndash;>
-<a name="unpack"></a> <!&textndash; http://nco.sf.net/nco.html#unpack &textndash;>
-</html>
-</unnumberedsubsec>
-<unnumberedsubsec spaces=" "><sectiontitle>Unpacking Algorithm</sectiontitle>
-<para><dfn>Unpacking</dfn>
-The unpacking algorithm depends on the presence of two attributes,
-<code>scale_factor</code> and <code>add_offset</code>.
-If <code>scale_factor</code> is present for a variable, the data are
-multiplied by the value <var>scale_factor</var> after the data are read.
-If <code>add_offset</code> is present for a variable, then the
-<var>add_offset</var> value is added to the data after the data are read.
-If both <code>scale_factor</code> and <code>add_offset</code> attributes are
-present, the data are first scaled by <var>scale_factor</var> before the
-offset <var>add_offset</var> is added.
-<tex endspaces=" ">
-$$
-\rm
-\eqalign{\hbox{upk} &= \hbox{scale\_factor}\times\hbox{pck} + \hbox{add\_offset}\cr
-&= {\hbox{pck}\times(\hbox{max}-\hbox{min})\over\hbox{ndrv}} + {\hbox{min}+\hbox{max}\over2}\cr}
-$$
-</tex>
-</para><sp value="1" line=" 1"></sp>
-<para><var>upk</var> = <var>scale_factor</var>*<var>pck</var> + <var>add_offset</var> = (<var>max</var>-<var>min</var>)*<var>pck</var>/<var>ndrv</var> + 0.5*(<var>min</var>+<var>max</var>)&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<para>When <code>scale_factor</code> and <code>add_offset</code> are used for packing, the
-associated variable (containing the packed data) is typically of type
-<code>byte</code> or <code>short</code>, whereas the unpacked values are intended to
-be of type <code>int</code>, <code>float</code>, or <code>double</code>.
-An attribute&textrsquo;s <code>scale_factor</code> and <code>add_offset</code> and
-<code>_FillValue</code>, if any, should all be of the type intended for the
-unpacked data, i.e., <code>int</code>, <code>float</code> or <code>double</code>.
-</para>
-</unnumberedsubsec>
-<unnumberedsubsec spaces=" "><sectiontitle>Default Handling of Packed Data</sectiontitle>
-<html endspaces=" ">
-<a name="hdf_upk"></a> <!&textndash; http://nco.sf.net/nco.html#hdf_upk &textndash;>
-<a name="hdf_unpack"></a> <!&textndash; http://nco.sf.net/nco.html#hdf_unpack &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="828">interoperability</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="829"><acronym><acronymword>HDF</acronymword></acronym> unpacking</indexterm></cindex>
-<para>Most files originally written in <acronym><acronymword>HDF</acronymword></acronym> format use the
-<acronym><acronymword>HDF</acronymword></acronym> packing/unpacking algorithm.
-This algorithm is incompatible with the netCDF packing algorithm
-described above.
-The unpacking component of the <acronym><acronymword>HDF</acronymword></acronym> algorithm (described
-<uref><urefurl>http://www.hdfgroup.org/HDF5/doc/UG/UG_frame10Datasets.html</urefurl><urefdesc spaces=" ">here</urefdesc></uref>) is
-<tex endspaces=" ">
-$$
-\rm
-\hbox{upk} = \hbox{scale\_factor}\times(\hbox{pck} - \hbox{add\_offset})
-$$
-</tex>
-</para><sp value="1" line=" 1"></sp>
-<para><var>upk</var> = <var>scale_factor</var>*(<var>pck</var> - <var>add_offset</var>)&linebreak;
-</para><sp value="1" line=" 1"></sp>
-<ignore>
-NB: HDF packing documentation is hard to follow
-MODIS HDF4 datasets definitely use the ``HDF algorithm''
-However, must discriminate between HDF4 and HDF5 packing.
-HDF4, or at least some HDF4 datasets implement the ``HDF algorithm'',
-aka linear scale_factor and add_offset in other order from netCDF.
-HDF5 only implements D-scaling, aka, decimal-scaling bit-packing.
-D-Scaling uses add_offset (i.e., minimum data value) and scale_factor
-(integer power of 10 by which the add_offset corrected data are divided
-before storage) to control D-scaling.
-
- at cindex scale-offset compression
- at cindex scale-offset filter
- at acronym{HDF} also calls this @dfn{scale-offset compression} and the
- at dfn{scale-offset filter}.
-</ignore>
-<para>Confusingly, the (incompatible) netCDF and <acronym><acronymword>HDF</acronymword></acronym> algorithms both
-store their parameters in attributes with the same names
-(<code>scale_factor</code> and <code>add_offset</code>).
-Data packed with one algorithm should never be unpacked with the other;
-doing so will result in incorrect answers.
-Unfortunately, few users are aware that their datasets may be packed,
-and fewer know the details of the packing algorithm employed.
-This is what we in the &textldquo;bizness&textrdquo; call an <dfn>interoperability</dfn> issue
-because it hampers data analysis performed on heterogeneous systems.
-</para>
-<para>As described below, <acronym><acronymword>NCO</acronymword></acronym> automatically unpacks data before
-performing arithmetic.
-This automatic unpacking occurs silently since there is usually no
-reason to bother users with these details.
-There is as yet no generic way for <acronym><acronymword>NCO</acronymword></acronym> to know which
-packing convention was used, so <acronym><acronymword>NCO</acronymword></acronym> <emph>assumes</emph> the netCDF
-convention was used.
-<acronym><acronymword>NCO</acronymword></acronym> uses the same convention for unpacking unless explicitly
-told otherwise with the <samp>--hdf_upk</samp> (also <samp>--hdf_unpack</samp>)
-switch.
-Until and unless a method of automatically detecting the packing method
-is devised, it must remain the user&textrsquo;s responsibility to tell
-<acronym><acronymword>NCO</acronymword></acronym> when to use the <acronym><acronymword>HDF</acronymword></acronym> convention instead of the
-netCDF convention to unpack.
-</para>
-<para>If your data originally came from an <acronym><acronymword>HDF</acronymword></acronym> file (e.g.,
-<acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>EOS</acronymword></acronym>) then it was likely packed with the
-<acronym><acronymword>HDF</acronymword></acronym> convention and must be unpacked with the same convention.
-Our recommendation is to only request <acronym><acronymword>HDF</acronymword></acronym> unpacking when you
-are certain.
-Most packed datasets encountered by <acronym><acronymword>NCO</acronymword></acronym> will have used the
-netCDF convention.
-Those that were not will hopefully produce noticeably weird values when
-unpacked by the wrong algorithm.
-Before or after panicking, treat this as a clue to re-try your commands
-with the <samp>--hdf_upk</samp> switch.
-See <ref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></ref> for an easy technique
-to unpack data packed with the <acronym><acronymword>HDF</acronymword></acronym> convention, and then
-re-pack it with the netCDF convention.
-</para>
-</unnumberedsubsec>
-<unnumberedsubsec spaces=" "><sectiontitle>Default Handling of Packed Data</sectiontitle>
-<para>All <acronym><acronymword>NCO</acronymword></acronym> arithmetic operators understand packed data.
-The operators automatically unpack any packed variable in the input
-file which will be arithmetically processed.
-For example, <command>ncra</command> unpacks all record variables,
-and <command>ncwa</command> unpacks all variable which contain a dimension to
-be averaged.
-These variables are stored unpacked in the output file.
-</para>
-<para>On the other hand, arithmetic operators do not unpack non-processed
-variables.
-For example, <command>ncra</command> leaves all non-record variables packed,
-and <command>ncwa</command> leaves packed all variables lacking an averaged
-dimension.
-These variables (called fixed variables) are passed unaltered from the
-input to the output file.
-Hence fixed variables which are packed in input files remain packed in
-output files.
-Completely packing and unpacking files is easily accomplished with
-<command>ncpdq</command> (<pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>).
-Pack and unpack individual variables with <command>ncpdq</command> and the
-<command>ncap2</command> <command>pack()</command> and <command>unpack()</command> functions
-(<pxref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="op_typ"></a> <!&textndash; http://nco.sf.net/nco.html#op_typ &textndash;>
-</html>
-</unnumberedsubsec>
-</section>
-<node name="Operation-Types" spaces=" "><nodename>Operation Types</nodename><nodenext spaces=" ">Type Conversion</nodenext><nodeprev spaces=" ">Packed data</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Operation Types</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="830">operation types</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="831"><code>avg</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="832"><code>sqravg</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="833"><code>avgsqr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="834"><code>min</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="835"><code>max</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="836"><code>mabs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="837"><code>mebs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="838"><code>mibs</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="839"><code>rmssdn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="840"><code>rms</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="841"><code>ttl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="842"><code>sqrt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="843">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="844">mean</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="845">total</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="846">minimum</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="847">maximum</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="848">root-mean-square</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="849">standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="850">variance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="851"><code>-y <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="852"><code>--operation <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="853"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncap2</command>, <command>ncra</command>, <command>nces</command>, <command>ncwa</command>&linebreak;
-Short options: <samp>-y</samp>&linebreak;
-Long options: <samp>--operation</samp>, <samp>--op_typ</samp>&linebreak;
-</para></cartouche>
-<noindent></noindent>
-<para>The <samp>-y <var>op_typ</var></samp> switch allows specification of many different
-types of operations
-Set <var>op_typ</var> to the abbreviated key for the corresponding operation:
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">avg</itemformat></item>
-</tableterm><tableitem><para>Mean value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sqravg</itemformat></item>
-</tableterm><tableitem><para>Square of the mean
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">avgsqr</itemformat></item>
-</tableterm><tableitem><para>Mean of sum of squares
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">max</itemformat></item>
-</tableterm><tableitem><para>Maximum value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">min</itemformat></item>
-</tableterm><tableitem><para>Minimum value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mabs</itemformat></item>
-</tableterm><tableitem><para>Maximum absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mebs</itemformat></item>
-</tableterm><tableitem><para>Mean absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mabs</itemformat></item>
-</tableterm><tableitem><para>Minimum absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rms</itemformat></item>
-</tableterm><tableitem><para>Root-mean-square (normalized by <var>N</var>)
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rmssdn</itemformat></item>
-</tableterm><tableitem><para>Root-mean square (normalized by <var>N-1</var>)
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sqrt</itemformat></item>
-</tableterm><tableitem><para>Square root of the mean
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ttl</itemformat></item>
-</tableterm><tableitem><para>Sum of values
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="854">coordinate variable</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> assumes coordinate variables represent grid axes, e.g.,
-longitude.
-The only rank-reduction which makes sense for coordinate variables
-is averaging.
-Hence <acronym><acronymword>NCO</acronymword></acronym> implements the operation type requested with
-<samp>-y</samp> on all non-coordinate variables, not on coordinate variables.
-When an operation requires a coordinate variable to be reduced in
-rank, i.e., from one dimension to a scalar or from one dimension to
-a degenerate (single value) array, then <acronym><acronymword>NCO</acronymword></acronym>
-<emph>always averages</emph> the coordinate variable regardless of the
-arithmetic operation type performed on the non-coordinate variables.
-</para>
-<para>The mathematical definition of each arithmetic operation is given below.
-<xref label="ncwa-netCDF-Weighted-Averager"><xrefnodename>ncwa netCDF Weighted Averager</xrefnodename></xref>, for additional information on
-masks and normalization.
-If an operation type is not specified with <samp>-y</samp> then the operator
-performs an arithmetic average by default.
-Averaging is described first so the terminology for the other operations
-is familiar.
-</para>
-<para><emph>Note for Info users</emph>:
-The definition of mathematical operations involving rank reduction
-(e.g., averaging) relies heavily on mathematical expressions which
-cannot be easily represented in Info.
-<emph>See the <uref><urefurl>./nco.pdf</urefurl><urefdesc spaces=" ">printed manual</urefdesc></uref> for much more detailed and
-complete documentation of this subject.</emph>
-</para>
-<tex endspaces=" ">
-The masked, weighted average of a variable $\xxx$ can be generally
-represented as
-$$
-\bar \xxx_{\jjj} = {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} \xxx_{\idx} \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}
-$$
-where $\bar \xxx_{\jjj}$ is the $\jjj$&textrsquo;th element of the output
-hyperslab, $\xxx_{\idx}$ is the $\idx$&textrsquo;th element of the input
-hyperslab, $\mssflg_{\idx}$ is~1 unless $\xxx_{\idx}$ equals the missing
-value, $\mskflg_{\idx}$ is~1 unless $\xxx_{\idx}$ is masked, and
-$\wgt_{\idx}$ is the weight.
-This formiddable looking formula represents a simple weighted average
-whose bells and whistles are all explained below.
-It is not too early to note, however, that when
-$\mssflg_{\idx} = \mskflg_{\idx} = \wgt_{\idx} = 1$, the
-generic averaging expression above reduces to a simple arithmetic
-average.
-Furthermore, $\mskflg_{\idx} = \wgt_{\idx} = 1$ for all operators
-except <command>ncwa</command>.
-These variables are included in the discussion below for completeness,
-and for possible future use in other operators.
-
-The size $\outnbr$ of the output hyperslab for a given variable is the
-product of all the dimensions of the input variable which are not
-averaged over.
-The size $\lmnnbr$ of the input hyperslab contributing to each
-$\bar \xxx_{\jjj}$ is simply the product of the sizes of all dimensions
-which are averaged over (i.e., dimensions specified with <samp>-a</samp>).
-Thus $\lmnnbr$ is the number of input elements which <emph>potentially</emph>
-contribute to each output element.
-An input element $\xxx_{\idx}$ contributes to the output element
-$\xxx_{\jjj}$ except in two conditions:
-<cindex index="cp" spaces=" "><indexterm index="cp">missing values</indexterm></cindex>
-<enumerate first="1" endspaces=" ">
-<listitem spaces=" ">$\xxx_{\idx}$ equals the <var>missing value</var>
-(<pxref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></pxref>) for the variable.
-</listitem><listitem spaces=" ">$\xxx_{\idx}$ is located at a point where the mask condition
-(<pxref label="Mask-condition"><xrefnodename>Mask condition</xrefnodename></pxref>) is false.
-</listitem></enumerate>
-Points $\xxx_{\idx}$ in either of these two categories do not contribute
-to $\xxx_{\jjj}$&textmdash;they are ignored.
-We now define these criteria more rigorously.
-
-Each~$\xxx_{\idx}$ has an associated Boolean weight~$\mssflg_{\idx}$
-whose value is~0 or~1 (false or true).
-The value of~$\mssflg_{\idx}$ is~1 (true) unless $\xxx_{\idx}$ equals
-the <var>missing value</var> (<pxref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></pxref>) for the variable.
-Thus, for a variable with no <code>_FillValue</code> attribute,
-$\mssflg_{\idx}$~is always~1.
-All <acronym><acronymword>NCO</acronymword></acronym> arithmetic operators (<command>ncbo</command>,
-<command>ncra</command>, <command>nces</command>, <command>ncflint</command>, <command>ncwa</command>) treat
-missing values analogously.
-
-Besides (weighted) averaging, <command>ncwa</command>, <command>ncra</command>, and
-<command>nces</command> also compute some common non-linear operations which may
-be specified with the <samp>-y</samp> switch (<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
-The other rank-reducing operations are simple variations of the generic
-weighted mean described above.
-The total value of~$\xxx$ (<code>-y ttl</code>) is
-$$
-\bar \xxx_{\jjj} = \sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} \xxx_{\idx}
-$$
-<cindex index="cp" spaces=" "><indexterm index="cp"><code>-N</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp"><code>numerator</code></indexterm></cindex>
-Note that the total is the same as the numerator of the mean
-of~$\xxx$, and may also be obtained in <command>ncwa</command> by using the
-<samp>-N</samp> switch (<pxref label="ncwa-netCDF-Weighted-Averager"><xrefnodename>ncwa netCDF Weighted Averager</xrefnodename></pxref>).
-
-The minimum value of~$\xxx$ (<code>-y min</code>) is
-$$
-\bar \xxx_{\jjj} = \min [ \mssflg_{1} \mskflg_{1} \wgt_{1} \xxx_{1},
-\mssflg_{2} \mskflg_{2} \wgt_{2} \xxx_{2}, \ldots, \mssflg_{\lmnnbr}
-\mskflg_{\lmnnbr} \wgt_{\lmnnbr} \xxx_{\lmnnbr} ]
-$$
-Analogously, the maximum value of~$\xxx$ (<code>-y max</code>) is
-$$
-\bar \xxx_{\jjj} = \max [ \mssflg_{1} \mskflg_{1} \wgt_{1} \xxx_{1},
-\mssflg_{2} \mskflg_{2} \wgt_{2} \xxx_{2}, \ldots, \mssflg_{\lmnnbr}
-\mskflg_{\lmnnbr} \wgt_{\lmnnbr} \xxx_{\lmnnbr} ]
-$$
-Thus the minima and maxima are determined after any weights are applied.
-
-The minimum absolute value of~$\xxx$ (<code>-y mibs</code>) is
-$$
-\bar \xxx_{\jjj} = \min [ \mssflg_{1} \mskflg_{1} \wgt_{1} |\xxx_{1}|,
-\mssflg_{2} \mskflg_{2} \wgt_{2} |\xxx_{2}|, \ldots, \mssflg_{\lmnnbr}
-\mskflg_{\lmnnbr} \wgt_{\lmnnbr} |\xxx_{\lmnnbr}| ]
-$$
-Analogously, the maximum absolute value of~$\xxx$ (<code>-y mabs</code>) is
-$$
-\bar \xxx_{\jjj} = \max [ \mssflg_{1} \mskflg_{1} \wgt_{1} |\xxx_{1}|,
-\mssflg_{2} \mskflg_{2} \wgt_{2} |\xxx_{2}|, \ldots, \mssflg_{\lmnnbr}
-\mskflg_{\lmnnbr} \wgt_{\lmnnbr} |\xxx_{\lmnnbr}| ]
-$$
-Thus the minimum and maximum absolute values are determined after any weights are applied.
-The mean absolute value of~$\xxx$ (<code>-y mebs</code>) is
-$$
-\bar \xxx_{\jjj} = \left( {\sum_{\idx=1}^{\idx=\lmnnbr}
-\mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx} |\xxx_{\idx}| \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}
-\right)^{2}
-$$
-
-The square of the mean value of~$\xxx$ (<code>-y sqravg</code>) is
-$$
-\bar \xxx_{\jjj} = \left( {\sum_{\idx=1}^{\idx=\lmnnbr}
-\mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx} \xxx_{\idx} \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}
-\right)^{2}
-$$
-The mean of the sum of squares of~$\xxx$ (<code>-y avgsqr</code>) is
-$$
-\bar \xxx_{\jjj} = {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} \xxx^{2}_{\idx} \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}
-$$
-If $\xxx$ represents a deviation from the mean of another variable,
-$\xxx_{\idx} = \yyy_{\idx} - \bar{\yyy}$ (possibly created by
-<command>ncbo</command> in a previous step), then applying <code>avgsqr</code> to
-$\xxx$ computes the approximate variance of $\yyy$.
-Computing the true variance of~$\yyy$ requires subtracting~1 from the
-denominator, discussed below.
-For a large sample size however, the two results will be nearly
-indistinguishable.
-
-The root mean square of~$\xxx$ (<code>-y rms</code>) is
-$$
-\bar \xxx_{\jjj} = \sqrt{ {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} x^{2}_{\idx} \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}}
-$$
-Thus <code>rms</code> simply computes the squareroot of the quantity computed
-by <code>avgsqr</code>.
-
-The root mean square of~$\xxx$ with standard-deviation-like
-normalization (<code>-y rmssdn</code>) is implemented as follows.
-When weights are not specified, this function is the same as the root
-mean square of~$\xxx$ except one is subtracted from the sum in the
-denominator
-$$
-\bar \xxx_{\jjj} = \sqrt{ {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} x^{2}_{\idx} \over -1 + \sum_{\idx=1}^{\idx=\lmnnbr}
-\mssflg_{\idx} \mskflg_{\idx}} }
-$$
-If $\xxx$ represents the deviation from the mean of another variable,
-$\xxx_{\idx} = \yyy_{\idx} - \bar{\yyy}$, then applying <code>rmssdn</code> to
-$\xxx$ computes the standard deviation of~$\yyy$.
-In this case the $-1$ in the denominator compensates for the degree of
-freedom already used in computing $\bar{\yyy}$ in the numerator.
-Consult a statistics book for more details.
-
-When weights are specified it is unclear how to compensate for this
-extra degree of freedom.
-Weighting the numerator and denominator of the above by $\wgt_{\idx}$
-and subtracting one from the denominator is only appropriate when all
-the weights are~1.0.
-When the weights are arbitrary (e.g., Gaussian weights), subtracting one
-from the sum in the denominator does not necessarily remove one degree
-of freedom.
-Therefore when <code>-y rmssdn</code> is requested and weights are specified,
-<command>ncwa</command> actually implements the <code>rms</code> procedure.
-<command>nces</command> and <command>ncra</command>, which do not allow weights to be
-specified, always implement the <code>rmssdn</code> procedure when asked.
-
-<!-- c 20130827: Fedora Core 19 (FC19) broke here with "./nco.texi:6394: Missing dollarsign inserted." -->
-<!-- c Ubuntu always built nco.texi fine -->
-<!-- c Adding a dollarsign character right here breaks Ubuntu builds too -->
-<!-- c Hence I must carefully spell-out the word dollarsign instead -->
-<!-- c 20130829: Making many smaller TeX environments does not solve problem -->
-<!-- c 20130910: Using latest texinfo.tex from GNU does not solve problem -->
-<!-- c 20130910: Karl Berry solved problem by fixing bug in texinfo.tex -->
-<!-- c Bug was triggered in Fedora by apostrophe in "User's Guide" (manual title) -->
-<!-- c Bug not present in texinfo.tex version 2008-04-18.10 (used by Ubuntu 13.04) -->
-<!-- c Bug present in texinfo.tex version 2013-02-01.11 (used by FC19) -->
-<!-- c Bug just fixed in texinfo.tex version 2013-09-11 (committed by Karl) -->
-<!-- c nco/autobld/texinfo.tex now contains fixed version -->
-<!-- c Breakage always occurs near here -->
-The square root of the mean of~$\xxx$ (<code>-y sqrt</code>) is
-$$
-\bar \xxx_{\jjj} = \sqrt{ {\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx}
-\mskflg_{\idx} \wgt_{\idx} \xxx_{\idx} \over
-\sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx} \wgt_{\idx}}}
-$$
-</tex>
-<para>The definitions of some of these operations are not universally useful.
-Mostly they were chosen to facilitate standard statistical
-computations within the <acronym><acronymword>NCO</acronymword></acronym> framework.
-We are open to redefining and or adding to the above.
-If you are interested in having other statistical quantities
-defined in <acronym><acronymword>NCO</acronymword></acronym> please contact the <acronym><acronymword>NCO</acronymword></acronym> project
-(<pxref label="Help-Requests-and-Bug-Reports"><xrefnodename>Help Requests and Bug Reports</xrefnodename></pxref>).
-</para>
-<noindent></noindent>
-<para>EXAMPLES
-</para>
-<html endspaces=" ">
-<a name="mabs"></a> <!&textndash; http://nco.sf.net/nco.html#mabs &textndash;>
-<a name="mebs"></a> <!&textndash; http://nco.sf.net/nco.html#mebs &textndash;>
-<a name="mibs"></a> <!&textndash; http://nco.sf.net/nco.html#mibs &textndash;>
-<a name="min"></a> <!&textndash; http://nco.sf.net/nco.html#min &textndash;>
-<a name="max"></a> <!&textndash; http://nco.sf.net/nco.html#max &textndash;>
-<a name="rms"></a> <!&textndash; http://nco.sf.net/nco.html#rms &textndash;>
-</html>
-<noindent></noindent>
-<para>Suppose you wish to examine the variable <code>prs_sfc(time,lat,lon)</code>
-which contains a time series of the surface pressure as a function of
-latitude and longitude.
-Find the minimum value of <code>prs_sfc</code> over all dimensions:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -y min -v prs_sfc in.nc foo.nc
-</pre></example>
-<noindent></noindent>
-<para>Find the maximum value of <code>prs_sfc</code> at each time interval for each
-latitude:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -y max -v prs_sfc -a lon in.nc foo.nc
-</pre></example>
-<noindent></noindent>
-<para>Find the root-mean-square value of the time-series of <code>prs_sfc</code> at
-every gridpoint:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -y rms -v prs_sfc in.nc foo.nc
-ncwa -y rms -v prs_sfc -a time in.nc foo.nc
-</pre></example>
-<noindent></noindent>
-<para>The previous two commands give the same answer but <command>ncra</command> is
-preferred because it has a smaller memory footprint.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="855">degenerate dimension</indexterm></cindex>
-A dimension of size one is said to be <dfn>degenerate</dfn>.
-By default, <command>ncra</command> leaves the (degenerate) <code>time</code>
-dimension in the output file (which is usually useful) whereas
-<command>ncwa</command> removes the <code>time</code> dimension (unless <samp>-b</samp> is
-given).
-</para>
-<noindent></noindent>
-<para>These operations work as expected in multi-file operators.
-Suppose that <code>prs_sfc</code> is stored in multiple timesteps per file
-across multiple files, say <file>jan.nc</file>, <file>feb.nc</file>,
-<file>march.nc</file>.
-We can now find the three month maximum surface pressure at every point.
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces -y max -v prs_sfc jan.nc feb.nc march.nc out.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="standard_deviation"></a> <!&textndash; http://nco.sf.net/nco.html#standard_deviation &textndash;>
-<a name="stddvn"></a> <!&textndash; http://nco.sf.net/nco.html#stddvn &textndash;>
-<a name="sdn"></a> <!&textndash; http://nco.sf.net/nco.html#sdn &textndash;>
-<a name="sdv"></a> <!&textndash; http://nco.sf.net/nco.html#sdv &textndash;>
-<a name="xmp_sdn"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_sdn &textndash;>
-</html>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="856">standard deviation</indexterm></cindex>
-<para>It is possible to use a combination of these operations to compute
-the variance and standard deviation of a field stored in a single file
-or across multiple files.
-The procedure to compute the temporal standard deviation of the surface
-pressure at all points in a single file <file>in.nc</file> involves three
-steps.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -O -v prs_sfc -a time in.nc out.nc
-ncbo -O -v prs_sfc in.nc out.nc out.nc
-ncra -O -y rmssdn out.nc out.nc
-</pre></example>
-<para>First construct the temporal mean of <code>prs_sfc</code> in the file
-<file>out.nc</file>.
-Next overwrite <file>out.nc</file> with the anomaly (deviation from the mean).
-Finally overwrite <file>out.nc</file> with the root-mean-square of itself.
-Note the use of <samp>-y rmssdn</samp> (rather than <samp>-y rms</samp>) in the
-final step.
-This ensures the standard deviation is correctly normalized by one fewer
-than the number of time samples.
-The procedure to compute the variance is identical except for the use of
-<samp>-y var</samp> instead of <samp>-y rmssdn</samp> in the final step.
-</para>
-<para><command>ncap2</command> can also compute statistics like standard deviations.
-Brute-force implementation of formulae is one option, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'prs_sfc_sdn=sqrt((prs_sfc-prs_sfc.avg($time)^2).total($time)/($time.size-1))'
- in.nc out.nc
-</pre></example>
-<para>The operation may, of course, be broken into multiple steps in order
-to archive intermediate quantities, such as the time-anomalies
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'prs_sfc_anm=prs_sfc-prs_sfc.avg($time)' \
- -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size-1))' \
- in.nc out.nc
-</pre></example>
-
-<para><command>ncap2</command> supports intrinsic standard deviation functions
-(<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>) which simplify the above expression to
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in.nc out.nc
-</pre></example>
-<para>These instrinsic functions compute the answer quickly and concisely.
-</para>
-<para>The procedure to compute the spatial standard deviation of a field
-in a single file <file>in.nc</file> involves three steps.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -O -v prs_sfc,gw -a lat,lon -w gw in.nc out.nc
-ncbo -O -v prs_sfc,gw in.nc out.nc out.nc
-ncwa -O -y rmssdn -v prs_sfc -a lat,lon -w gw out.nc out.nc
-</pre></example>
-<para>First the appropriately weighted (with <samp>-w gw</samp>) spatial mean values
-are written to the output file.
-This example includes the use of a weighted variable specified with
-<samp>-w gw</samp>.
-When using weights to compute standard deviations one must remember to
-include the weights in the initial output files so that they may be used
-again in the final step.
-The initial output file is then overwritten with the gridpoint
-deviations from the spatial mean.
-Finally the root-mean-square of the appropriately weighted spatial
-deviations is taken.
-</para>
-<para>The <command>ncap2</command> solution to the spatially-weighted standard
-deviation problem is
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'prs_sfc_sdn=(prs_sfc*gw-prs_sfc*gw.avg($lat,$lon)).rmssdn($lat,$lon)' \
- in.nc out.nc
-</pre></example>
-<para>Be sure to multiply the variable by the weight prior to computing the
-the anomalies and the standard deviation.
-</para>
-<para>The procedure to compute the standard deviation of a time-series across
-multiple files involves one extra step since all the input must first be
-collected into one file.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat -O -v tpt in.nc in.nc foo1.nc
-ncwa -O -a time foo1.nc foo2.nc
-ncbo -O -v tpt foo1.nc foo2.nc foo3.nc
-ncra -O -y rmssdn foo3.nc out.nc
-</pre></example>
-<para>The first step assembles all the data into a single file.
-Though this may consume a lot of temporary disk space, it is more or
-less required by the <command>ncbo</command> operation in the third step.
-</para>
-<html endspaces=" ">
-<a name="typ_cnv"></a> <!&textndash; http://nco.sf.net/nco.html#typ_cnv &textndash;>
-</html>
-</section>
-<node name="Type-Conversion" spaces=" "><nodename>Type Conversion</nodename><nodenext spaces=" ">Batch Mode</nodenext><nodeprev spaces=" ">Operation Types</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Type Conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="857">type conversion</indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability (automatic type conversion): <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncflint</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
-Short options: None (it&textrsquo;s <emph>automatic</emph>)&linebreak;
-Availability (manual type conversion): <command>nces</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
-Short options: None&linebreak;
-Long options: <samp>--dbl</samp>, <samp>--flt</samp>, <samp>--rth_dbl</samp>, <samp>--rth_flt</samp>&linebreak;
-</para></cartouche>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="858">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="859">demotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="860">automatic type conversion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="861">manual type conversion</indexterm></cindex>
-<para>Type conversion refers to the casting or coercion of one fundamental or
-atomic data type to another, e.g., converting <code>NC_SHORT</code> (two
-bytes) to <code>NC_DOUBLE</code> (eight bytes).
-Type conversion always <dfn>promotes</dfn> or <dfn>demotes</dfn> the range and/or
-precision of the values a variable can hold.
-Type conversion is automatic when the language carries out this
-promotion according to an internal set of rules without explicit user
-intervention.
-In contrast, manual type conversion refers to explicit user commands to
-change the type of a variable or attribute.
-Most type conversion happens automatically, yet there are situations in
-which manual type conversion is advantageous.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Automatic type conversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Promoting Single-precision to Double</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Manual type conversion</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Automatic-type-conversion" spaces=" "><nodename>Automatic type conversion</nodename><nodenext spaces=" ">Promoting Single-precision to Double</nodenext><nodeprev spaces=" ">Type Conversion</nodeprev><nodeup spaces=" ">Type Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>Automatic type conversion</sectiontitle>
-
-<para>There are at least two reasons to avoid type conversions.
-First, type conversions are expensive since they require creating
-(temporary) buffers and casting each element of a variable from its
-storage type to some other type and then, often, converting it back.
-Second, a dataset&textrsquo;s creator perhaps had a good reason for storing
-data as, say, <code>NC_FLOAT</code> rather than <code>NC_DOUBLE</code>.
-In a scientific framework there is no reason to store data with more
-precision than the observations merit.
-Normally this is single-precision, which guarantees 6&textndash;9 digits of
-precision.
-Reasons to engage in type conversion include avoiding rounding
-errors and out-of-range limitations of less-precise types.
-This is the case with most integers.
-Thus <acronym><acronymword>NCO</acronymword></acronym> defaults to automatically promote integer types to
-floating point when performing lengthy arithmetic, yet <acronym><acronymword>NCO</acronymword></acronym>
-defaults to not promoting single to double-precision floats.
-</para>
-<para>Before discussing the more subtle floating point issues, we first
-examine integer promotion.
-We will show how following parsimonious conversion rules dogmatically
-can cause problems, and what <acronym><acronymword>NCO</acronymword></acronym> does about that.
-That said, there are situations in which implicit conversion of
-single- to double-precision is also warranted.
-Understanding the narrowness of these situations takes time, and we
-hope the reader appreciates the following detailed discussion.
-</para>
-<para>Consider the average of the two <code>NC_SHORT</code>s <code>17000s</code> and
-<code>17000s</code>.
-A straightforward average without promotion results in garbage since the
-intermediate value which holds their sum is also of type <code>NC_SHORT</code>
-and thus overflows on (i.e., cannot represent) values greater than
-32,767
-<footnote spaces="\n"><set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$32767 = 2^{15}-1$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<para><math>32767 = 2^15-1</math>
-<clear name="flg" line=" flg"></clear>
-</para></footnote>.
-There are valid reasons for expecting this operation to succeed and
-the <acronym><acronymword>NCO</acronymword></acronym> philosophy is to make operators do what you want, not
-what is purest.
-Thus, unlike C and Fortran, but like many other higher level interpreted
-languages, <acronym><acronymword>NCO</acronymword></acronym> arithmetic operators will perform automatic type
-conversion on integers when all the following conditions are met
-<footnote><para>Operators began performing automatic type conversions before
-arithmetic in <acronym><acronymword>NCO</acronymword></acronym> <w>version 1.2</w>, August, 2000.
-Previous versions never performed unnecessary type conversion for
-arithmetic.</para></footnote>:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>The requested operation is arithmetic.
-This is why type conversion is limited to the operators <command>ncap2</command>,
-<command>ncbo</command>, <command>nces</command>, <command>ncflint</command>, <command>ncra</command>, and
-<command>ncwa</command>.
-</para></listitem><listitem spaces=" "><para>The arithmetic operation could benefit from type conversion.
-Operations that could benefit include averaging, summation, or any
-&textldquo;hard&textrdquo; arithmetic that could overflow or underflow.
-Larger representable sums help avoid overflow, and more precision
-helps to avoid underflow.
-Type conversion does not benefit searching for minima and maxima
-(<samp>-y min</samp>, or <samp>-y max</samp>).
-</para></listitem><listitem spaces=" "><para>The variable on disk is of type <code>NC_BYTE</code>, <code>NC_CHAR</code>,
-<code>NC_SHORT</code>, or <code>NC_INT</code>.
-Type <code>NC_DOUBLE</code> is not promoted because there is no type of
-higher precision.
-Conversion of type <code>NC_FLOAT</code> is discussed in detail below.
-When it occurs, it follows the same procedure (promotion then
-arithmetic then demotion) as conversion of integer types.
-</para></listitem></enumerate>
-
-<para>When these criteria are all met, the operator promotes the variable in
-question to type <code>NC_DOUBLE</code>, performs all the arithmetic
-operations, casts the <code>NC_DOUBLE</code> type back to the original type,
-and finally writes the result to disk.
-The result written to disk may not be what you expect, because of
-incommensurate ranges represented by different types, and because of
-(lack of) rounding.
-First, continuing the above example, the average (e.g., <samp>-y avg</samp>)
-of <code>17000s</code> and <code>17000s</code> is written to disk as <code>17000s</code>.
-The type conversion feature of <acronym><acronymword>NCO</acronymword></acronym> makes this possible since
-the arithmetic and intermediate values are stored as <code>NC_DOUBLE</code>s,
-i.e., <code>34000.0d</code> and only the final result must be represented
-as an <code>NC_SHORT</code>.
-Without the type conversion feature of <acronym><acronymword>NCO</acronymword></acronym>, the average would
-have been garbage (albeit predictable garbage near <code>-15768s</code>).
-Similarly, the total (e.g., <samp>-y ttl</samp>) of <code>17000s</code> and
-<code>17000s</code> written to disk is garbage (actually <code>-31536s</code>) since
-the final result (the true total) of <math>34000</math> is outside the range
-of type <code>NC_SHORT</code>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="862"><code>trunc()</code></indexterm></cindex>
-<para>After arithmetic is computed in double-precision for promoted variables,
-the intermediate double-precision values must be demoted to the
-variables&textrsquo; original storage type (e.g., from <code>NC_DOUBLE</code> to
-<code>NC_SHORT</code>).
-<acronym><acronymword>NCO</acronymword></acronym> has handled this demotion in three ways in its history.
-Prior to October, 2011 (version 4.0.8), <acronym><acronymword>NCO</acronymword></acronym> employed the
-<w>C library</w> truncate function, <code>trunc()</code>
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="863">C language</indexterm></cindex>
-<para>The actual type conversions with trunction were handled by intrinsic
-type conversion, so the <code>trunc()</code> function was never explicitly
-called, although the results would be the same if it were.</para></footnote>.
-Truncation rounds <var>x</var> to the nearest integer not larger in absolute
-value.
-For example, truncation rounds <code>1.0d</code>, <code>1.5d</code>, and
-<code>1.8d</code> to the same value, <code>1s</code>.
-Clearly, truncation does not round floating point numbers to the nearest
-integer!
-Yet truncation is how the <w>C language</w> performs implicit conversion of
-real numbers to integers.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="864">Neil Davis</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> stopped using truncation for demotion when an alert user
-(Neil Davis) informed us that this caused a small bias in the packing
-algorithm employed by <command>ncpdq</command>.
-This led to <acronym><acronymword>NCO</acronymword></acronym> adopting rounding functions for demotion.
-Rounding functions eliminated the small bias in the packing algorithm.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="12" mergedindex="cp"><code>lround()</code>.</indexterm></findex>
-<para>From February, 2012 through March, 2013 (versions 4.0.9&textndash;4.2.6),
-<acronym><acronymword>NCO</acronymword></acronym> employed the <w>C library</w> family of rounding functions,
-<code>lround()</code>.
-These functions round <var>x</var> to the nearest integer, halfway cases away
-from zero.
-The problem with <code>lround()</code> is that it always rounds real values
-ending in <code>.5</code> away from zero.
-This rounds, for example, <code>1.5d</code> and <code>2.5d</code> to <code>2s</code>
-and <code>3s</code>, respectively.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="13" mergedindex="cp"><code>lrint()</code>.</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="865"><acronym><acronymword>IEEE</acronymword></acronym></indexterm></cindex>
-<para>Since April, 2013 (version 4.3.0), <acronym><acronymword>NCO</acronymword></acronym> has employed the
-other <w>C library</w> family of rounding functions, <code>lrint()</code>.
-This algorithm rounds <var>x</var> to the nearest integer, using the current
-rounding direction.
-Halfway cases are rounded to the nearest even integer.
-This rounds, for example, both <code>1.5d</code> and <code>2.5d</code> to the same
-value, <code>2s</code>, as recommended by the <acronym><acronymword>IEEE</acronymword></acronym>.
-This rounding is symmetric: up half the time, down half the time.
-This is the current and hopefully final demotion algorithm employed by
-<acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<para>Hence because of automatic conversion, <acronym><acronymword>NCO</acronymword></acronym> will compute the
-average of <code>2s</code> and <code>3s</code> in double-precision arithmetic as
-<math>(<code>2.0d</code> + <code>3.0d</code>)/<code>2.0d</code>) = <code>2.5d</code></math>.
-It then demotes this intermediate result back to <code>NC_SHORT</code> and
-stores it on disk as
-<math><code>trunc(2.5d)</code> = <code>2s</code></math> (versions up to 4.0.8),
-<math><code>lround(2.5d)</code> = <code>3s</code></math> (versions 4.0.9&textndash;4.2.6), and
-<math><code>lrint(2.5d)</code> = <code>2s</code></math> (versions 4.3.0 and later).
-</para>
-<html endspaces=" ">
-<a name="sp_dp"></a> <!&textndash; http://nco.sf.net/nco.html#sp_dp &textndash;>
-<a name="dbl"></a> <!&textndash; http://nco.sf.net/nco.html#dbl &textndash;>
-</html>
-</subsection>
-<node name="Promoting-Single_002dprecision-to-Double" spaces=" "><nodename>Promoting Single-precision to Double</nodename><nodenext spaces=" ">Manual type conversion</nodenext><nodeprev spaces=" ">Automatic type conversion</nodeprev><nodeup spaces=" ">Type Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>Promoting Single-precision to Double</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="866">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="867">implicit conversion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="868"><code>--dbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="869"><code>--rth_dbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="870"><code>--flt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="871"><code>--rth_flt</code></indexterm></cindex>
-<para>Promotion of real numbers from single- to double-precision is
-fundamental to scientific computing.
-When it should occur depends on the precision of the inputs and the
-number of operations.
-Single-precision (four-byte) numbers contain about seven significant
-figures, while double-precision contain about sixteen.
-More, err, precisely, the <acronym><acronymword>IEEE</acronymword></acronym> single-precision representation
-gives from <w>6 to 9</w> significant decimal digits precision
-<footnote><para>According to Wikipedia&textrsquo;s summary of <acronym><acronymword>IEEE</acronymword></acronym>
-<w>standard 754</w>, &textldquo;If a decimal string with at most <w>6 significant</w>
-digits is converted to <w><acronym><acronymword>IEEE</acronymword></acronym> 754</w> single-precision and then
-converted back to the same number of significant decimal, then the final
-string should match the original; and if an <w><acronym><acronymword>IEEE</acronymword></acronym> 754</w>
-single-precision is converted to a decimal string with at <w>leastn 9</w>
-significant decimal and then converted back to single, then the final
-number must match the original&textrdquo;.</para></footnote>.
-And the <acronym><acronymword>IEEE</acronymword></acronym> double-precision representation
-gives from <w>15 to 17</w> significant decimal digits precision
-<footnote><para>According to Wikipedia&textrsquo;s summary of <acronym><acronymword>IEEE</acronymword></acronym>
-<w>standard 754</w>, &textldquo;If a decimal string with at most <w>15 significant</w>
-digits is converted to <w><acronym><acronymword>IEEE</acronymword></acronym> 754</w> double-precision
-representation and then converted back to a string with the same number
-of significant digits, then the final string should match the original;
-and if an <w><acronym><acronymword>IEEE</acronymword></acronym> 754</w> double precision is converted to a
-decimal string with at least <w>17 significant</w> digits and then
-converted back to double, then the final number must match the
-original&textrdquo;.</para></footnote>.
-Hence double-precision numbers represent about nine digits more
-precision than single-precision numbers.
-</para>
-<para>Given these properties, there are at least two possible arithmetic
-conventions for the treatment of real numbers:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="872">C language</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="873">Fortran</indexterm></cindex>
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Conservative, aka Fortran Convention
-Automatic type conversion during arithmetic in the Fortran language is,
-by default, performed only when necessary.
-All operands in an operation are converted to the most precise type
-involved the operation before the arithmetic operation.
-Expressions which involve only single-precision numbers are computed
-entirely in single-precision.
-Expressions involving mixed precision types are computed in the type
-of higher precision.
-<acronym><acronymword>NCO</acronymword></acronym> by default employs the Fortan Convention for promotion.
-</para></listitem><listitem spaces=" "><para>Aggressive, aka C Convention
-The <w>C language</w> is by default much more aggressive (and thus
-wasteful) than Fortran, and will always implicitly convert single-
-to double-precision numbers for no good reason.
-All real-number standard <w>C library</w> functions are double-precision,
-and <w>C programmers</w> must take extra steps to only utilize single
-precision arithmetic.
-The high level interpreted data analysis languages <acronym><acronymword>IDL</acronymword></acronym>,
-Matlab, and <acronym><acronymword>NCL</acronymword></acronym> all adopt the <w>C Convention</w>.
-</para></listitem></enumerate>
-
-<para><acronym><acronymword>NCO</acronymword></acronym> does not automatically promote <code>NC_FLOAT</code> because, in
-our judgement, the performance penalty of always doing so would outweigh
-the potential benefits.
-The now-classic text &textldquo;Numerical Recipes <w>in C</w>&textrdquo; discusses this point
-under the section &textldquo;Implicit Conversion of Float to Double&textrdquo;
-<footnote><para>See <w>page 21</w> in Section 1.2 of the First edition for this
-gem:
-</para><quotation endspaces=" ">
-<para>One does not need much experience in scientific computing to recognize
-that the implicit conversion rules are, in fact, sheer madness!
-In effect, they make it impossible to write efficient numerical
-programs.
-</para></quotation>
-</footnote>.
-That said, such promotion is warranted in some circumstances.
-</para>
-<para>For example, rounding errors can accumulate to worrisome levels during
-arithmetic performed on large arrays of single-precision floats.
-This use-case occurs often in geoscientific studies of climate where
-thousands-to-millions of gridpoints may contribute to a single average.
-If the inputs are all single-precision, then so should be the output.
-However the intermediate results where running sums are accumulated may
-suffer from too much rounding or from underflow unless computed in
-double-precision.
-</para>
-<para>The order of operations matters to floating point math even when the
-analytic expressions are equal.
-Cautious users feel disquieted when results from equally valid analyses
-differ in the final bits instead of agreeing bit-for-bit.
-For example, averaging arrays in multiple stages produces different
-answers than averaging them in one step.
-This is easily seen in the computation of ensemble averages by two
-different methods.
-The <acronym><acronymword>NCO</acronymword></acronym> test file <file>in.nc</file> contains single- and
-double-precision representations of the same temperature timeseries as
-<code>tpt_flt</code> and <code>tpt_dbl</code>.
-Pretend each datapoint in this timeseries represents a monthly-mean
-temperature.
-We will mimic the derivation of a fifteen-year ensemble-mean January
-temperature by concatenating the input file five times, and then
-averaging the datapoints representing January two different ways.
-In <w>Method 1</w> we derive the 15-year ensemble January average in two
-steps, as the average of three five-year averages.
-This method is naturally used when each input file contains multiple
-years and multiple input files are needed
-<footnote><para>For example, the <acronym><acronymword>CMIP5</acronymword></acronym> archive tends to distribute
-monthly average timeseries in 50-year chunks.</para></footnote>.
-In <w>Method 2</w> we obtain 15-year ensemble January average in a single
-step, by averaging all 15 Januaries at one time:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># tpt_flt and tpt_dbl are identical except for precision
-ncks --cdl -C -v tpt_flt,tpt_dbl ~/nco/data/in.nc
-# tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
-# tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274
-# Create file with five "ten-month years" (i.e., 50 timesteps) of temperature data
-ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc in.nc ~/foo.nc
-# Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
-ncra --flt -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
-# Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
-ncra --flt -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
-# Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
-ncra --flt -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
-# Method 1: Obtain ensemble January average by averaging the averages
-ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
-# Method 2: Obtain ensemble January average by averaging the raw data
-# Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
-ncra --flt -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
-# Difference the two methods
-ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
-ncks --cdl ~/foo_avg_dff.nc
-# tpt_dbl = 5.6843418860808e-14 ;
-# tpt_flt = -3.051758e-05 ;
-</pre></example>
-<para>Although the two methods are arithmetically equivalent, they produce
-slightly different answers due to the different order of operations.
-Moreover, it appears at first glance that the single-precision
-answers suffer from greater error than the double-precision answers.
-In fact both precisions suffer from non-zero rounding errors.
-The answers differ negligibly to machine precision, which is about
-seven significant figures for single precision floats (<code>tpt_flt</code>),
-and sixteen significant figures for double precision (<code>tpt_dbl</code>).
-The input precision determines the answer precision.
-</para>
-<para><acronym><acronymword>IEEE</acronymword></acronym> arithmetic guarantees that two methods will produce
-bit-for-bit identical answers only if they compute the same operations
-in the same order.
-Bit-for-bit identical answers may also occur by happenstance when
-rounding errors exactly compensate one another.
-This is demonstrated by repeating the example above with the
-<samp>--dbl</samp> (or <samp>--rth_dbl</samp> for clarity) option which forces
-conversion of single-precision numbers to double-precision prior to
-arithmetic.
-Now <command>ncra</command> will treat the first value of <code>tpt_flt</code>,
-<code>273.1000f</code>, as <code>273.1000000000000d</code>.
-Arithmetic on <code>tpt_flt</code> then proceeds in double-precision until the
-final answer, which is converted back to single-precision for final
-storage.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Average 1st five "Januaries" (elements 1, 11, 21, 31, 41)
-ncra --dbl -O -F -d time,1,,10 ~/foo.nc ~/foo_avg1.nc
-# Average 2nd five "Januaries" (elements 2, 12, 22, 32, 42)
-ncra --dbl -O -F -d time,2,,10 ~/foo.nc ~/foo_avg2.nc
-# Average 3rd five "Januaries" (elements 3, 13, 23, 33, 43)
-ncra --dbl -O -F -d time,3,,10 ~/foo.nc ~/foo_avg3.nc
-# Method 1: Obtain ensemble January average by averaging the averages
-ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mth1.nc
-# Method 2: Obtain ensemble January average by averaging the raw data
-# Employ ncra's "subcycle" feature (http://nco.sf.net/nco.html#ssc)
-ncra --dbl -O -F -d time,1,,10,3 ~/foo.nc ~/foo_avg_mth2.nc
-# Difference the two methods
-ncbo -O ~/foo_avg_mth1.nc ~/foo_avg_mth2.nc ~/foo_avg_dff.nc
-# Show differences
-ncks --cdl ~/foo_avg_dff.nc
-# tpt_dbl = 5.6843418860808e-14 ;
-# tpt_flt = 0 ;
-</pre></example>
-<para>The <samp>--dbl</samp> switch has no effect on the results computed from
-double-precision inputs.
-But now the two methods produce bit-for-bit identical results from the
-single-precision inputs!
-This is due to the happenstance of rounding along with the effects of
-the <samp>--dbl</samp> switch.
-The <samp>--flt</samp> and <samp>--rth_flt</samp> switches are provided for
-symmetry.
-They enforce the traditional <acronym><acronymword>NCO</acronymword></acronym> and Fortran convention of
-keeping single-precision arithmetic in single-precision unless a
-double-precision number is explicitly involved.
-</para>
-<para>We have shown that forced promotion of single- to double-precision
-prior to arithmetic has advantages and disadvantages.
-The primary disadvantages are speed and size.
-Double-precision arithmetic is 10&textndash;60% slower than, and requires
-twice the memory of single-precision arithmetic.
-The primary advantage is that rounding errors in double-precision are
-much less likely to accumulate to values near the precision of the
-underlying geophysical variable.
-</para>
-<para>For example, if we know temperature to five significant digits, then a
-rounding error of 1-bit could affect the least precise digit of
-temperature after 1,000&textndash;10,000 consecutive one-sided rounding
-errors under the worst possible scenario.
-Many geophysical grids have tens-of-thousands to millions of points
-that must be summed prior to normalization to compute an average.
-It is possible for single-precision rouding errors to accumulate and
-degrade the precision in such situtations.
-Double-precision arithmetic mititgates this problem, so <samp>--dbl</samp>
-would be warranted.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="874"><acronym><acronymword>TREFHT</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="875"><acronym><acronymword>CAM3</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="876"><acronym><acronymword>GCM</acronymword></acronym></indexterm></cindex>
-<para>This can be seen with another example, averaging a global surface
-temperature field with <command>ncwa</command>.
-The input contains a single-precision global temperature field
-(stored in <code>TREFHT</code>) produced by the <acronym><acronymword>CAM3</acronymword></acronym> general
-circulation model (<acronym><acronymword>GCM</acronymword></acronym>) run and stored at <w>1.9 by 2.5</w>
-degrees resolution.
-This requires <w>94 latitudes</w> and <w>144 longitudes</w>, or <math>13,824</math>
-total surface gridpoints, a typical GCM resolution these days.
-These input characteristics are provided only to show the context
-to the interested reader, equivalent results would be found in
-statistics of any dataset of comparable size.
-Models often represent Earth on a spherical grid where global averages
-must be created by weighting each gridcell by its latitude-dependent
-weight (i.e., the Gaussian weight stored in <code>gw</code>), or by the
-surface area of each contributing gridpoint (stored in <code>area</code>).
-</para>
-<para>Like many geophysical models and most <acronym><acronymword>GCM</acronymword></acronym>s, <acronym><acronymword>CAM3</acronymword></acronym>
-runs completely in double-precision yet stores its archival output in
-single-precision to save space.
-In practice such models usually save multi-dimensional prognostic and
-diagnostic fields (like <code>TREFHT(lat,lon)</code> and <code>area(lat,lon)</code>)
-as single-precision, while saving all one-dimensional coordinates and
-weights (here <code>lat</code>, <code>lon</code>, and <code>gw(lon)</code>) as
-double-precision.
-To obtain pure double-precision arithmetic <emph>and</emph> storage of the
-globla mean temperature, we first create and store double-precision
-versions of the single-precision fields:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc
-</pre></example>
-<para>The single- and double-precision temperatures may each be averaged
-globally using four permutations for the precision of the weight
-and of the intermediate arithmetic representation:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Single-precision weight (<code>area</code>), single-precision arithmetic
-</para></listitem><listitem spaces=" "><para>Double-precision weight (<code>gw</code>), single-precision arithmetic
-</para></listitem><listitem spaces=" "><para>Single-precision weight (<code>area</code>), double-precision arithmetic
-</para></listitem><listitem spaces=" "><para>Double-precision weight (<code>gw</code>), double-precision arithmetic
-</para></listitem></enumerate>
-<example endspaces=" ">
-<pre xml:space="preserve"># NB: Values below are printed with C-format %5.6f using
-# ncks -H -C -s '%5.6f' -v TREFHT,TREFHT_dbl out.nc
-# Single-precision weight (area), single-precision arithmetic
-ncwa --flt -O -a lat,lon -w area in.nc out.nc
-# TREFHT = 289.246735
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), single-precision arithmetic
-ncwa --flt -O -a lat,lon -w gw in.nc out.nc
-# TREFHT = 289.226135
-# TREFHT_dbl = 289.239964
-# Single-precision weight (area), double-precision arithmetic
-ncwa --dbl -O -a lat,lon -w area in.nc out.nc
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), double-precision arithmetic
-ncwa --dbl -O -a lat,lon -w gw in.nc out.nc
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-</pre></example>
-<para>First note that the <code>TREFHT_dbl</code> average never changes because
-<code>TREFHT_dbl(lat,lon)</code> is double-precision in the input file.
-As described above, <acronym><acronymword>NCO</acronymword></acronym> automatically converts all operands
-involving to the highest precision involved in the operation.
-So specifying <samp>--dbl</samp> is redundant for double-precision inputs.
-</para>
-<para>Second, the single-precision arithmetic averages of the single-precision
-input <code>TREFHT</code> differ by <math>289.246735 - 289.226135 = 0.0206</math>
-from eachother, and, more importantly, by as much as
-<math>289.239964 - 289.226135 = 0.013829</math> from the correct
-(double-precision) answer.
-These averages differ in the fifth digit, i.e., they agree only to four
-significant figures!
-Given that climate scientists are concerned about global temperature
-variations of a tenth of a degree or less, this difference is large.
-It means that the global mean temperature changes scientists are looking
-for are comparable in size to the numerical artifacts produced by the
-averaging procedure.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="877">rounding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="878">random walk</indexterm></cindex>
-<para>Why are the single-precision numerical artifacts so large?
-Each global average is the result of multiplying almost 15,000 elements
-each by its weight, summing those, and then dividing by the summed
-weights.
-Thus about 50,000 single-precision floating point operations caused
-the loss of two to three significant digits of precision.
-The net error of a series of independent rounding errors is a random
-walk phenomena
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="879">Michael Prather</indexterm></cindex>
-<para>Thanks to <w>Michael J.</w> Prather for explaining this to me.</para></footnote>.
-Successive rounding errors displace the answer further from the truth.
-An ensemble of such averages will, on average, have no net bias.
-In other words, the expectation value of a series of <acronym><acronymword>IEEE</acronymword></acronym>
-rounding errors is zero.
-And the error of any given sequence of rounding errors obeys, for large
-series, a Gaussian distribution centered on zero.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="880">mantissa</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="881">exponent</indexterm></cindex>
-<para>Single-precision numbers use three of their four eight-bit bytes to
-represent the mantissa so the smallest representable single-precision
-mantissa is <math>\epsilon \equiv 2^{-23} = 1.19209 \times 10^{-7}</math>.
-This <math>\epsilon</math> is the smallest <var>x</var> such that
-<math>1.0 + x \ne 1.0</math>.
-This is the rounding error for non-exact precision-numbers.
-Applying random walk theory to rounding, it can be shown that the
-expected rounding error after <var>n</var> inexact operations is
-<math>\sqrt{2n/\pi}</math> for <w>large <var>n</var></w>.
-The expected (i.e., mean absolute) rounding error in our example with
-<math>13,824</math> additions is about
-<math>\sqrt{2 \times 13824 / \pi} = 91.96</math>.
-Hence, addition alone of about fifteen thousand single-precision floats
-is expected to consume about two significant digits of precision.
-This neglects the error due to the inner product (weights times values)
-and normalization (division by tally) aspects of a weighted average.
-the ratio of two numbers each containing a numerical bias can magnify
-the size of the bias.
-In summary, a global mean number computed from about 15,000 gridpoints
-each with weights can be expected to lose up to three significant digits.
-Since single-precision starts with about seven significant digits, we
-should not expect to retain more than four significant digits after
-computing weighted averages in single-precision.
-The above example with <code>TREFHT</code> shows the expected four digits of
-agreement.
-<!-- c For example, 50,000 coin flips would lead to 25,500 or more ``heads'' -->
-<!-- c only a small percentage of the time. -->
-<!-- c P(k,n)= 50000_C_25500 p^k(1-p)^(n-k) -->
-<!-- c P(25500,50000)= 50000_C_25500 (0.5)^(25500)(0.5)^(24500) -->
-<!-- c P(>=25500,50000)= ? -->
-<!-- c fxm: Use Gaussian distribution/Random Walk -->
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="882">beer</indexterm></cindex>
-<para>The <acronym><acronymword>NCO</acronymword></acronym> results have been independently validated to the
-extent possible in three other languages:
-<w>C</w>, Matlab, and <acronym><acronymword>NCL</acronymword></acronym>.
-C and <acronym><acronymword>NCO</acronymword></acronym> are the only languages that permit single-precision
-numbers to be treated with single precision arithmetic:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Double-precision weight (gw), single-precision arithmetic (C)
-ncwa_3528514.exe
-# TREFHT = 289.240112
-# Double-precision weight (gw), double-precision arithmetic (C)
-# TREFHT = 289.239964
-# Single-precision weight (area), double-precision arithmetic (Matlab)
-# TREFHT = 289.239964
-# Double-precision weight (gw), double-precision arithmetic (Matlab)
-# TREFHT = 289.239964
-# Single-precision weight (area), double-precision arithmetic (NCL)
-ncl < ncwa_3528514.ncl
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-# Double-precision weight (gw), double-precision arithmetic (NCL)
-# TREFHT = 289.239960
-# TREFHT_dbl = 289.239964
-</pre></example>
-<para>All languages tested (C, Matlab, <acronym><acronymword>NCL</acronymword></acronym>, and <acronym><acronymword>NCO</acronymword></acronym>) agree
-to machine precision with double-precision arithmetic.
-Users are fortunate to have a variety of high quality software that
-liberates them from the drudgery of coding their own.
-Many packages are free (as in beer)!
-As shown above <acronym><acronymword>NCO</acronymword></acronym> permits one to shift to their
-float-promotion preferences as desired.
-No other language allows this with a simple switch.
-</para>
-<para>To summarize, until version 4.3.6 (September, 2013), the default
-arithmetic convention of <acronym><acronymword>NCO</acronymword></acronym> adhered to Fortran behavior,
-and automatically promoted single-precision to double-precision in all
-mixed-precision expressions, and left-alone pure single-precision
-expressions.
-This is faster and more memory efficient than other conventions.
-However, pure single-precision arithmetic can lose too much precision
-when used to condense (e.g., average) large arrays.
-Statistics involving about <math>n = 10,000</math> single-precision inputs
-will lose about <w>2&textndash;3</w> digits if not promoted to double-precision
-prior to arithmetic.
-The loss scales with the squareroot <w>of <var>n</var></w>.
-For larger <var>n</var>, users should promote floats with the <samp>--dbl</samp>
-option if they want to preserve more than four significant digits in
-their results.
-</para>
-<para>The <samp>--dbl</samp> and <samp>--flt</samp> switches are only available with the
-<acronym><acronymword>NCO</acronymword></acronym> arithmetic operators that could potentially perform more
-than a few single-precision floating point operations per result.
-These are <command>nces</command>, <command>ncra</command>, and <command>ncwa</command>.
-Each is capable of thousands to millions or more operations per result.
-By contrast, the arithmetic operators <command>ncbo</command> and
-<command>ncflint</command> perform at most one floating point operation per
-result.
-Providing the <samp>--dbl</samp> option for such trivial operations makes
-little sense, so the option is not currently made available.
-</para>
-<para>We are interested in users&textrsquo; opinions on these matters.
-The default behavior was changed from <samp>--flt</samp> to <samp>--dbl</samp>
-with the release of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.6 (October 2013).
-We will change the default back to <samp>--flt</samp> if users prefer.
-Or we could set a threshold (e.g., <math>n \ge 10000</math>) after which
-single- to double-precision promotion is automatically invoked.
-Or we could make the default promotion convention settable via an
-environment variable (<acronym><acronymword>GSL</acronymword></acronym> does this a lot).
-Please let us know what you think of the selected defaults and options.
-</para>
-</subsection>
-<node name="Manual-type-conversion" spaces=" "><nodename>Manual type conversion</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Promoting Single-precision to Double</nodeprev><nodeup spaces=" ">Type Conversion</nodeup></node>
-<subsection spaces=" "><sectiontitle>Manual type conversion</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="883"><command>ncap2</command></indexterm></cindex>
-<para><command>ncap2</command> provides intrinsic functions for performing manual type
-conversions.
-This, for example, converts variable <code>tpt</code> to external type
-<code>NC_SHORT</code> (a C-type <code>short</code>), and variable <code>prs</code> to
-external type <code>NC_DOUBLE</code> (a C-type <code>double</code>).
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'tpt=short(tpt);prs=double(prs)' in.nc out.nc
-</pre></example>
-<para><xref label="ncap2-netCDF-Arithmetic-Processor"><xrefnodename>ncap2 netCDF Arithmetic Processor</xrefnodename></xref>, for more details.
-</para>
-<html endspaces=" ">
-<a name="ovr"></a> <!&textndash; http://nco.sf.net/nco.html#ovr &textndash;>
-<a name="-O"></a> <!&textndash; http://nco.sf.net/nco.html#-O &textndash;>
-</html>
-</subsection>
-</section>
-<node name="Batch-Mode" spaces=" "><nodename>Batch Mode</nodename><nodenext spaces=" ">History Attribute</nodenext><nodeprev spaces=" ">Type Conversion</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Batch Mode</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="884">batch mode</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="885">overwriting files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="886">appending to files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="887">force overwrite</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="888">force append</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="889"><code>-O</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="890"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="891"><code>--overwrite</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="892"><code>--ovr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="893"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="894"><code>--append</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-O</samp>, <samp>-A</samp>&linebreak;
-Long options: <samp>--ovr</samp>, <samp>--overwrite</samp>, <samp>--apn</samp>, <samp>--append</samp>&linebreak;
-</para></cartouche>
-<para>If the <var>output-file</var> specified for a command is a pre-existing file,
-then the operator will prompt the user whether to overwrite (erase) the
-existing <var>output-file</var>, attempt to append to it, or abort the
-operation.
-However, interactive questions reduce productivity when processing large
-amounts of data.
-Therefore <acronym><acronymword>NCO</acronymword></acronym> also implements two ways to override its own safety
-features, the <samp>-O</samp> and <samp>-A</samp> switches.
-Specifying <samp>-O</samp> tells the operator to overwrite any existing
-<var>output-file</var> without prompting the user interactively.
-Specifying <samp>-A</samp> tells the operator to attempt to append to any
-existing <var>output-file</var> without prompting the user interactively.
-These switches are useful in batch environments because they suppress
-interactive keyboard input.
-NB: As of 20120515, <command>ncap2</command> is unable to append to files that
-already contain the appended dimensions.
-</para>
-<html endspaces=" ">
-<a name="hst"></a> <!&textndash; http://nco.sf.net/nco.html#hst &textndash;>
-<a name="history"></a> <!&textndash; http://nco.sf.net/nco.html#history &textndash;>
-<a name="-h"></a> <!&textndash; http://nco.sf.net/nco.html#-h &textndash;>
-</html>
-</section>
-<node name="History-Attribute" spaces=" "><nodename>History Attribute</nodename><nodenext spaces=" ">File List Attributes</nodenext><nodeprev spaces=" ">Batch Mode</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>History Attribute</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="895"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="896">timestamp</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="897">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="898">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="899"><code>-h</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="900"><code>--hst</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="901"><code>--history</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-h</samp>&linebreak;
-Long options: <samp>--hst</samp>, <samp>--history</samp>&linebreak;
-</para></cartouche>
-<para>All operators automatically append a <code>history</code> global attribute to
-any file they create or modify.
-The <code>history</code> attribute consists of a timestamp and the full string
-of the invocation command to the operator, e.g., <samp>Mon May 26 20:10:24
-1997: ncks in.nc foo.nc</samp>.
-The full contents of an existing <code>history</code> attribute are copied
-from the first <var>input-file</var> to the <var>output-file</var>.
-The timestamps appear in reverse chronological order, with the most
-recent timestamp appearing first in the <code>history</code> attribute.
-Since <acronym><acronymword>NCO</acronymword></acronym> and many other netCDF operators adhere to the
-<code>history</code> convention, the entire data processing path of a given
-netCDF file may often be deduced from examination of its <code>history</code>
-attribute.
-As of May, 2002, <acronym><acronymword>NCO</acronymword></acronym> is case-insensitive to the spelling
-of the <code>history</code> attribute name.
-Thus attributes named <code>History</code> or <code>HISTORY</code> (which are
-non-standard and not recommended) will be treated as valid history
-attributes.
-When more than one global attribute fits the case-insensitive search
-for &textldquo;history&textrdquo;, the first one found will be used.
-<code>history</code> attribute
-<cindex index="cp" spaces=" "><indexterm index="cp" number="902"><command>ncatted</command></indexterm></cindex>
-To avoid information overkill, all operators have an optional switch
-(<samp>-h</samp>, <samp>--hst</samp>, or <samp>--history</samp>) to override
-automatically appending the <code>history</code> attribute
-(<pxref label="ncatted-netCDF-Attribute-Editor"><xrefnodename>ncatted netCDF Attribute Editor</xrefnodename></pxref>).
-Note that the <samp>-h</samp> switch also turns off writing the
-<code>nco_input_file_list</code> attribute for multi-file operators
-(<pxref label="File-List-Attributes"><xrefnodename>File List Attributes</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="fl_lst_in_att"></a> <!&textndash; http://nco.sf.net/nco.html#fl_lst_in_att &textndash;>
-</html>
-</section>
-<node name="File-List-Attributes" spaces=" "><nodename>File List Attributes</nodename><nodenext spaces=" ">CF Conventions</nodenext><nodeprev spaces=" ">History Attribute</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>File List Attributes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="903"><code>nco_input_file_list</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="904"><code>nco_input_file_number</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="905"><code>stdin</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="906">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="907">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="908"><code>-H</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="909"><code>--fl_lst_in</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="910"><code>--file_list</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>nces</command>, <command>ncecat</command>, <command>ncra</command>, <command>ncrcat</command>&linebreak;
-Short options: <samp>-H</samp>&linebreak;
-Long options: <samp>--fl_lst_in</samp>, <samp>--file_list</samp>&linebreak;
-</para></cartouche>
-<para>Many methods of specifying large numbers of input file names pass
-these names via pipes, encodings, or argument transfer programs
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-When these methods are used, the input file list is not explicitly
-passed on the command line.
-This results in a loss of information since the <code>history</code>
-attribute no longer contains the exact command by which the file
-was created.
-</para>
-<para><acronym><acronymword>NCO</acronymword></acronym> solves this dilemma by archiving input file list
-attributes.
-When the input file list to a multi-file operator is specified
-via <code>stdin</code>, the operator, by default, attaches two global
-attributes to any file they create or modify.
-The <code>nco_input_file_number</code> global attribute contains the number of
-input files, and <code>nco_input_file_list</code> contains the file names,
-specified as standard input to the multi-file operator.
-This information helps to verify that all input files the user thinks
-were piped through <code>stdin</code> actually arrived.
-Without the <code>nco_input_file_list</code> attribute, the information is lost
-forever and the &textldquo;chain of evidence&textrdquo; would be broken.
-</para>
-<para>The <samp>-H</samp> switch overrides (turns off) the default behavior of
-writing the input file list global attributes when input is from
-<code>stdin</code>.
-The <samp>-h</samp> switch does this too, and turns off the <code>history</code>
-attribute as well (<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>).
-Hence both switches allows space-conscious users to avoid storing what
-may amount to many thousands of filenames in a metadata attribute.
-</para>
-<html endspaces=" ">
-<a name="CF"></a> <!&textndash; http://nco.sf.net/nco.html#CF &textndash;>
-<a name="cnv"></a> <!&textndash; http://nco.sf.net/nco.html#cnv &textndash;>
-<a name="cnv_CF"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF &textndash;>
-<a name="cnv_CCSM"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CCSM &textndash;>
-</html>
-</section>
-<node name="CF-Conventions" spaces=" "><nodename>CF Conventions</nodename><nodenext spaces=" ">ARM Conventions</nodenext><nodeprev spaces=" ">File List Attributes</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle><acronym><acronymword>CF</acronymword></acronym> Conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="911"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="912"><acronym><acronymword>CCSM</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="913">UDUnits</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="914"><code>ORO</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="915"><code>area</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="916"><code>datesec</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="917"><code>date</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="918"><code>gw</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="919"><code>hyai</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="920"><code>hyam</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="921"><code>hybi</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="922"><code>hybm</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="923"><code>lat_bnds</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="924"><code>lon_bnds</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="925"><code>msk_*</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncbo</command>, <command>nces</command>, <command>ncecat</command>,
-<command>ncflint</command>, <command>ncpdq</command>, <command>ncra</command>, <command>ncwa</command>&linebreak;
-Short options: None&linebreak;
-</para></cartouche>
-<para><acronym><acronymword>NCO</acronymword></acronym> recognizes some Climate and Forecast (<acronym><acronymword>CF</acronymword></acronym>)
-metadata conventions, and applies special rules to such data.
-<acronym><acronymword>NCO</acronymword></acronym> was contemporaneous with <acronym><acronymword>COARDS</acronymword></acronym> and still
-contains some rules to handle older <acronym><acronymword>NCAR</acronymword></acronym> model datasets, such as
-<acronym><acronymword>CCM</acronymword></acronym> and early <acronym><acronymword>CCSM</acronymword></acronym> datasets, that pre-date
-<acronym><acronymword>CF</acronymword></acronym>.
-Such datasets may not contain an explicit <code>Conventions</code> attribute
-(e.g., <samp>CF-1.0</samp>).
-Nevertheless, we refer to all such metadata collectively as <acronym><acronymword>CF</acronymword></acronym>
-metadata.
-Skip this section if you never work with <acronym><acronymword>CF</acronymword></acronym> metadata.
-</para>
-<para>The latest <acronym><acronymword>CF</acronymword></acronym> netCDF conventions are described
-<uref><urefurl>http://cfconventions.org/1.6.html</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-Most <acronym><acronymword>CF</acronymword></acronym> netCDF conventions are transparent to <acronym><acronymword>NCO</acronymword></acronym>
-<footnote spaces="\n"><para>The exception is appending/altering the attributes <code>x_op</code>,
-<code>y_op</code>, <code>z_op</code>, and <code>t_op</code> for variables which have been
-averaged across space and time dimensions.
-This feature is scheduled for future inclusion in <acronym><acronymword>NCO</acronymword></acronym>.
-</para></footnote>.
-There are no known pitfalls associated with using any <acronym><acronymword>NCO</acronymword></acronym>
-operator on files adhering to these conventions
-<footnote spaces="\n"><para>The <acronym><acronymword>CF</acronymword></acronym> conventions recommend <code>time</code> be stored in the
-format <var>time</var> since <var>base_time</var>, e.g., the <code>units</code>
-attribute of <code>time</code> might be
-<samp>days since 1992-10-8 15:15:42.5 -6:00</samp>.
-<w>A problem</w> with this format occurs when using <command>ncrcat</command> to
-concatenate multiple files, each with a different <var>base_time</var>.
-That is, any <code>time</code> values from files following the first file to
-be concatenated should be corrected to the <var>base_time</var> offset
-specified in the <code>units</code> attribute of <code>time</code> from the first
-file.
-The analogous problem has been fixed in <acronym><acronymword>ARM</acronymword></acronym> files
-(<pxref label="ARM-Conventions"><xrefnodename>ARM Conventions</xrefnodename></pxref>) and could be fixed for <acronym><acronymword>CF</acronymword></acronym> files if
-there is sufficient lobbying.
-</para></footnote>.
-However, to facilitate maximum user friendliness, <acronym><acronymword>NCO</acronymword></acronym> applies
-special rules to certain variables in <acronym><acronymword>CF</acronymword></acronym> files.
-The special functions are not required by the <acronym><acronymword>CF</acronymword></acronym> netCDF
-conventions, yet experience shows that they simplify data analysis.
-</para>
-<html endspaces=" ">
-<a name="prc_xcp"></a> <!&textndash; http://nco.sf.net/nco.html#prc_xcp &textndash;>
-</html>
-<para>Currently, <acronym><acronymword>NCO</acronymword></acronym> determines whether a datafile is a
-<acronym><acronymword>CF</acronymword></acronym> output datafile simply by checking (case-insensitively)
-whether the value of the global attribute <code>Conventions</code> (if any)
-equals <samp>CF-1.0</samp> or <samp>NCAR-CSM</samp>
-Should <code>Conventions</code> equal either of these in the (first)
-<var>input-file</var>, <acronym><acronymword>NCO</acronymword></acronym> will apply special rules to certain
-variables because of their usual meaning in <acronym><acronymword>CF</acronymword></acronym> files.
-<acronym><acronymword>NCO</acronymword></acronym> will not average the following variables often found in
-<acronym><acronymword>CF</acronymword></acronym> files:
-<code>ntrm</code>, <code>ntrn</code>, <code>ntrk</code>, <code>ndbase</code>, <code>nsbase</code>,
-<code>nbdate</code>, <code>nbsec</code>, <code>mdt</code>, <code>mhisf</code>.
-These variables contain scalar metadata such as the resolution of the
-host geophysical model and it makes no sense to change their values.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="926">non-coordinate grid properties</indexterm></cindex>
-<para>Furthermore, the <dfn>size and rank-preserving arithmetic operators</dfn> try
-not to operate on certain grid properties.
-These operators are <command>ncap2</command>, <command>ncbo</command>, <command>nces</command>,
-<command>ncflint</command>, and <command>ncpdq</command> (when used for packing, not for
-permutation).
-These operators do not operate, by default, on (i.e., add, subtract,
-pack, etc.) the following variables:
-<code>ORO</code>,
-<code>area</code>,
-<code>datesec</code>,
-<code>date</code>,
-<code>gw</code>,
-<code>hyai</code>,
-<code>hyam</code>,
-<code>hybi</code>.
-<code>hybm</code>,
-<code>lat_bnds</code>,
-<code>lon_bnds</code>,
-<code>msk_*</code>.
-These variables represent the Gaussian weights, the orography field,
-time fields, hybrid pressure coefficients, and latititude/longitude
-boundaries.
-We call these fields non-coordinate <dfn>grid properties</dfn>.
-Coordinate grid properties are easy to identify because they are
-coordinate variables such as <code>latitude</code> and <code>longitude</code>.
-</para>
-<para>Users usually want <emph>all</emph> grid properties to remain unaltered in the
-output file.
-To be treated as a grid property, the variable name must <emph>exactly</emph>
-match a name in the above list, or be a coordinate variable.
-The handling of <code>msk_*</code> is exceptional in that <emph>any</emph> variable
-name beginning with the string <code>msk_</code> is considered to be a
-&textldquo;mask&textrdquo; and is thus preserved (not operated on arithmetically).
-</para>
-<para>You must spoof <acronym><acronymword>NCO</acronymword></acronym> if you would like any grid properties
-or other special <acronym><acronymword>CF</acronymword></acronym> fields processed normally.
-For example rename the variables first with <command>ncrename</command>,
-or alter the <code>Conventions</code> attribute.
-</para>
-<html endspaces=" ">
-<a name="cnv_CF_bnd"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_bnd &textndash;>
-<a name="bnd"></a> <!&textndash; http://nco.sf.net/nco.html#bnd &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="927"><code>bounds</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="928">bounds convention</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.0.8 (April, 2011), <acronym><acronymword>NCO</acronymword></acronym>
-supports the <acronym><acronymword>CF</acronymword></acronym> <code>bounds</code> convention for cell boundaries
-described
-<uref><urefurl>http://cfconventions.org/1.6.html#cell-boundaries</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-This convention allows coordinate variables (including multidimensional
-coordinates) to describe the boundaries of their cells.
-This is done by naming the variable which contains the bounds in
-in the <code>bounds</code> attribute.
-Note that coordinates of rank <math>N</math> have bounds of rank <math>N+1</math>.
-NCO-generated subsets of <acronym><acronymword>CF</acronymword></acronym>-compliant files with <code>bounds</code>
-attributes will include the coordinates specified by the <code>bounds</code>
-attribute, if any.
-Hence the subsets will themselves be <acronym><acronymword>CF</acronymword></acronym>-compliant.
-Bounds are subject to the user-specified override switches
-(including <samp>-c</samp> and <samp>-C</samp>) described in
-<ref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="cnv_CF_ncl"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_ncl &textndash;>
-<a name="ncl"></a> <!&textndash; http://nco.sf.net/nco.html#ncl &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="929"><code>ancillary_variables</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="930">ancillary variables convention</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.5 (July, 2014), <acronym><acronymword>NCO</acronymword></acronym>
-supports the <acronym><acronymword>CF</acronymword></acronym> <code>ancillary_variables</code> convention for
-described
-<uref><urefurl>http://cfconventions.org/1.6.html#ancillary-data</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-This convention allows ancillary variables to be associated with one or
-more primary variables.
-<acronym><acronymword>NCO</acronymword></acronym> attaches any such variables to the extraction list along
-with the primary variable and its usual (one-dimensional) coordinates,
-if any.
-Ancillary variables are subject to the user-specified override switches
-(including <samp>-c</samp> and <samp>-C</samp>) described in
-<ref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="cnv_CF_crd"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_crd &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="931"><code>coordinates</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="932">coordinates convention</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="933">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="934">auxiliary coordinates</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="935">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="936"><code>-C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="937"><code>-c</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="938"><code>--no-coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="939"><code>--no-crd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="940"><code>--coords</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="941"><code>--crd</code></indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 3.9.6 (January, 2009), <acronym><acronymword>NCO</acronymword></acronym>
-supports the <acronym><acronymword>CF</acronymword></acronym> <code>coordinates</code> convention described
-<uref><urefurl>http://cfconventions.org/1.6.html#coordinate-system</urefurl><urefdesc spaces=" ">here</urefdesc></uref>.
-This convention allows variables to specify additional coordinates
-(including multidimensional coordinates) in a space-separated string
-attribute named <code>coordinates</code>.
-<acronym><acronymword>NCO</acronymword></acronym> attaches any such coordinates to the extraction list along
-with variable and its usual (one-dimensional) coordinates, if any.
-These auxiliary coordinates are subject to the user-specified override
-switches (including <samp>-c</samp> and <samp>-C</samp>) described in
-<ref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></ref>.
-</para>
-<html endspaces=" ">
-<a name="cnv_CF_cll_mth"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_CF_cll_mth &textndash;>
-<a name="cll_mth"></a> <!&textndash; http://nco.sf.net/nco.html#cll_mth &textndash;>
-<a name="no_cll_mth"></a> <!&textndash; http://nco.sf.net/nco.html#no_cll_mth &textndash;>
-<a name="cell_methods"></a> <!&textndash; http://nco.sf.net/nco.html#cell_methods &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="942"><code>cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="943"><code>--cll_mth</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="944"><code>--no_cll_mth</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="945"><code>--cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="946"><code>--no_cell_methods</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="947">cell methods convention</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.2 (February, 2014), <acronym><acronymword>NCO</acronymword></acronym>
-supports some of the <acronym><acronymword>CF</acronymword></acronym> <code>cell_methods</code>
-<uref><urefurl>http://cfconventions.org/1.6.html#cell-methods</urefurl><urefdesc spaces=" ">convention</urefdesc></uref>
-to describe the analysis procedures that have been applied to data.
-The convention creates (or appends to an existing) <code>cell_methods</code>
-attribute a space-separated list of couplets of the form <var>dmn: op</var>
-where <var>dmn</var> is a comma-separated list of dimensions previously
-contained in the variable that have been reduced by the arithmetic
-operation <var>op</var>.
-For example, the <code>cell_methods</code> value <code>time: mean</code> says that
-the variable in question was averaged over the <code>time</code> dimension.
-In such cases <code>time</code> will either be a scalar variable or a
-degenerate dimension or coordinate.
-This simply means that it has been averaged-over.
-The value <code>time, lon: mean lat: max</code> says that the variable in
-question is the maximum zonal mean of the time averaged original
-variable.
-Which is to say that the variable was first averaged over time and
-longitude, and then the residual latitudinal array was reduced by
-choosing the maximum value.
-Since the <code>cell methods</code> convention may alter metadata in an
-undesirable (or possibly incorrect) fashion, we provide switches
-to ensure it is always or never used.
-Use long-options <samp>--cll_mth</samp> or <samp>--cell_methods</samp> to invoke the
-algorithm (true by default), and options <samp>--no_cll_mth</samp> or
-<samp>--no_cell_methods</samp> to turn it off.
-These options are only available in the operators <command>ncwa</command> and
-<command>ncra</command>.
-</para>
-<html endspaces=" ">
-<a name="cnv_ARM"></a> <!&textndash; http://nco.sf.net/nco.html#cnv_ARM &textndash;>
-</html>
-</section>
-<node name="ARM-Conventions" spaces=" "><nodename>ARM Conventions</nodename><nodenext spaces=" ">Operator Version</nodenext><nodeprev spaces=" ">CF Conventions</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle><acronym><acronymword>ARM</acronymword></acronym> Conventions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="948"><acronym><acronymword>ARM</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="949"><code>time_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="950"><code>base_time</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="951"><code>time</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: <command>ncrcat</command>&linebreak;
-Short options: None&linebreak;
-</para></cartouche>
-<para><command>ncrcat</command> has been programmed to correctly handle data files
-which utilize the Atmospheric Radiation Measurement (<acronym><acronymword>ARM</acronymword></acronym>)
-Program <uref><urefurl>http://www.arm.gov/data/time.stm</urefurl><urefdesc>convention</urefdesc></uref> for
-time and time offsets.
-If you do not work with <acronym><acronymword>ARM</acronymword></acronym> data then you may skip this
-section.
-<acronym><acronymword>ARM</acronymword></acronym> data files store time information in two variables, a
-scalar, <code>base_time</code>, and a record variable, <code>time_offset</code>.
-Subtle but serious problems can arise when these type of files are
-just blindly concatenated.
-Therefore <command>ncrcat</command> has been specially programmed to be able to
-chain together consecutive <acronym><acronymword>ARM</acronymword></acronym> <var>input-files</var> and produce
-and an <var>output-file</var> which contains the correct time information.
-Currently, <command>ncrcat</command> determines whether a datafile is an
-<acronym><acronymword>ARM</acronymword></acronym> datafile simply by testing for the existence of the
-variables <code>base_time</code>, <code>time_offset</code>, and the dimension
-<code>time</code>.
-If these are found in the <var>input-file</var> then <command>ncrcat</command> will
-automatically perform two non-standard, but hopefully useful,
-procedures.
-First, <command>ncrcat</command> will ensure that values of <code>time_offset</code>
-appearing in the <var>output-file</var> are relative to the <code>base_time</code>
-appearing in the first <var>input-file</var> (and presumably, though not
-necessarily, also appearing in the <var>output-file</var>).
-Second, if a coordinate variable named <code>time</code> is not found in the
-<var>input-files</var>, then <command>ncrcat</command> automatically creates the
-<code>time</code> coordinate in the <var>output-file</var>.
-The values of <code>time</code> are defined by the <acronym><acronymword>ARM</acronymword></acronym> conventions
-<math><var>time</var> = <var>base_time</var> + <var>time_offset</var></math>.
-Thus, if <var>output-file</var> contains the <code>time_offset</code>
-variable, it will also contain the <code>time</code> coordinate.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="952"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="953">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="954">attributes, global</indexterm></cindex>
-<w>A short</w> message is added to the <code>history</code> global attribute
-whenever these <acronym><acronymword>ARM</acronymword></acronym>-specific procedures are executed.
-</para>
-<html endspaces=" ">
-<a name="vrs"></a> <!&textndash; http://nco.sf.net/nco.html#vrs &textndash;>
-<a name="version"></a> <!&textndash; http://nco.sf.net/nco.html#version &textndash;>
-</html>
-</section>
-<node name="Operator-Version" spaces=" "><nodename>Operator Version</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ARM Conventions</nodeprev><nodeup spaces=" ">Shared features</nodeup></node>
-<section spaces=" "><sectiontitle>Operator Version</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="955">version</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="956"><acronym><acronymword>RCS</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="957"><code>-r</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="958"><code>--revision</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="959"><code>--version</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="960"><code>--vrs</code></indexterm></cindex>
-<cartouche endspaces=" ">
-<para>Availability: All operators&linebreak;
-Short options: <samp>-r</samp>&linebreak;
-Long options: <samp>--revision</samp>, <samp>--version</samp>, or <samp>--vrs</samp>&linebreak;
-</para></cartouche>
-<para>All operators can be told to print their version information,
-library version, copyright notice, and compile-time configuration
-with the <samp>-r</samp> switch, or its long-option equivalent
-<samp>revision</samp>.
-The <samp>--version</samp> or <samp>--vrs</samp> switches print the operator
-version information only.
-The internal version number varies between operators, and indicates the
-most recent change to a particular operator&textrsquo;s source code.
-This is useful in making sure you are working with the most recent
-operators.
-The version of <acronym><acronymword>NCO</acronymword></acronym> you are using might be, e.g., <code>3.9.5</code>.
-Using <samp>-r</samp> on, say, <command>ncks</command>, produces something like
-<samp>NCO netCDF Operators version "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by zender
-Copyright (C) 1995--2008 Charlie Zender
-ncks version 20090918</samp>.
-This tells you that <command>ncks</command> contains all patches up to version
-<code>3.9.5</code>, which dates from <w>May 11</w>, 2008.
-<html endspaces=" ">
-<a name="rfr"></a> <!&textndash; http://nco.sf.net/nco.html#rfr &textndash;>
-</html>
-</para></section>
-</chapter>
-<node name="Reference-Manual" spaces=" "><nodename>Reference Manual</nodename><nodenext spaces=" ">Contributing</nodenext><nodeprev spaces=" ">Shared features</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Reference Manual</sectiontitle>
-
-<para>This chapter presents reference pages for each of the operators
-individually.
-The operators are presented in alphabetical order.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="961">command line switches</indexterm></cindex>
-All valid command line switches are included in the syntax statement.
-Recall that descriptions of many of these command line switches are
-provided only in <ref label="Shared-features"><xrefnodename>Shared features</xrefnodename></ref>, to avoid redundancy.
-Only options specific to, or most useful with, a particular operator are
-described in any detail in the sections below.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">ncap2 netCDF Arithmetic Processor</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncatted netCDF Attribute Editor</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncbo netCDF Binary Operator</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">nces netCDF Ensemble Statistics</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncecat netCDF Ensemble Concatenator</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncflint netCDF File Interpolator</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncks netCDF Kitchen Sink</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncpdq netCDF Permute Dimensions Quickly</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncra netCDF Record Averager</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncrcat netCDF Record Concatenator</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncrename netCDF Renamer</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ncwa netCDF Weighted Averager</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<page></page>
-<html endspaces=" ">
-<a name="ncap"></a> <!&textndash; http://nco.sf.net/nco.html#ncap &textndash;>
-<a name="ncap2"></a> <!&textndash; http://nco.sf.net/nco.html#ncap2 &textndash;>
-</html>
-<node name="ncap2-netCDF-Arithmetic-Processor" spaces=" "><nodename>ncap2 netCDF Arithmetic Processor</nodename><nodenext spaces=" ">ncatted netCDF Attribute Editor</nodenext><nodeprev spaces=" ">Reference Manual</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncap2</command> netCDF Arithmetic Processor</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="962">parser</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="963">lexer</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="964">arithmetic processor</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="14" mergedindex="cp">ncap</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="15" mergedindex="cp">ncap2</indexterm></findex>
-<cartouche endspaces=" ">
-<para><command>ncap2</command> understands a relatively full-featured
-language of operations, including loops, conditionals, arrays,
-and math functions.
-<command>ncap2</command> is the most rapidly changing <acronym><acronymword>NCO</acronymword></acronym> operator and
-its documentation is incomplete.
-The distribution file <file>data/ncap2_tst.nco</file> contains an up-to-date
-overview of its syntax and capabilities.
-The <file>data/*.nco</file> distribution files (especially
-<file>bin_cnt.nco</file>, <file>psd_wrf.nco</file>, and <file>rgr.nco</file>) contain
-in-depth examples of <command>ncap2</command> solutions to complex problems.
-</para></cartouche>
-
-<!-- c fxm: TODO nco549 hyper-link all switches to explanatory sections? -->
-<!-- c Problem is that only works well in HTML mode -->
-<!-- c TeXInfo has no native mode for concise hyperlinks in text mode -->
-<!-- c Currently in TeX/PDF mode, TeXInfo opens browser to find link, -->
-<!-- c rather than jumping to internal link within document -->
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 [-3] [-4] [-6] [-7] [<uref><urefurl>http://nco.sf.net/nco.html#-A</urefurl><urefreplacement>-A</urefreplacement></uref>] [-C] [-c]
-[-D <var>dbg</var>] [-F] [-f] [-h] [--hdf] [--hdr_pad <var>nbr</var>] [-L <var>dfl_lvl</var>] [-l <var>path</var>]
-[--no_tmp_fl] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-[-s <var>algebra</var>] [-S <var>fl.nco</var>] [-t <var>thr_nbr</var>] [-v]
-<var>input-file</var> [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncap2</command> arithmetically processes netCDF files
-<footnote><para><command>ncap2</command> is the successor to <command>ncap</command> which was
-put into maintenance mode in November, 2006.
-This documentation refers to <command>ncap2</command>, which has a superset of
-the <command>ncap</command> functionality.
-Eventually <command>ncap</command> will be deprecated in favor <command>ncap2</command>.
-<command>ncap2</command> may be renamed <command>ncap</command> in 2013.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="965">script file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="966"><code>--script-file</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="967"><code>--fl_spt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="968"><code>--script</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="969"><code>--spt</code></indexterm></cindex>
-The processing instructions are contained either in the <acronym><acronymword>NCO</acronymword></acronym>
-script file <file>fl.nco</file> or in a sequence of command line arguments.
-The options <samp>-s</samp> (or long options <samp>--spt</samp> or <samp>--script</samp>)
-are used for in-line scripts and <samp>-S</samp> (or long options
-<samp>--fl_spt</samp> or <samp>--script-file</samp>) are used to provide the
-filename where (usually multiple) scripting commands are pre-stored.
-<command>ncap2</command> was written to perform arbitrary algebraic
-transformations of data and archive the results as easily as possible.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="970">derived fields</indexterm></cindex>
-<xref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></xref>, for treatment of missing values.
-The results of the algebraic manipulations are called
-<dfn>derived fields</dfn>.
-</para>
-<para>Unlike the other operators, <command>ncap2</command> does not accept a list of
-variables to be operated on as an argument to <samp>-v</samp>
-(<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>).
-Rather, the <samp>-v</samp> switch takes no arguments and indicates
-that <command>ncap2</command> should output <emph>only</emph> user-defined variables.
-<command>ncap2</command> neither accepts nor understands the <var>-x</var> switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="971">appending variables</indexterm></cindex>
-NB: As of 20120515, <command>ncap2</command> is unable to append to files that
-already contain the appended dimensions.
-</para>
-<!-- c @subsection Scripting Mathematical Processing with @command{ncap2} -->
-
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Syntax of ncap2 statements</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Expressions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Dimensions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Left hand casting</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Arrays and hyperslabs</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Attributes</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Number literals</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">if statement</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">print statement</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Missing values ncap2</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Methods and functions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">RAM variables</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Where statement</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Loops</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Include files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Sort methods</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Irregular grids</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Bilinear interpolation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">GSL special functions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">GSL interpolation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">GSL least-squares fitting</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">GSL statistics</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">GSL random number generation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Examples ncap2</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Intrinsic mathematical methods</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Operator precedence and associativity </menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">ID Quoting</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="att_prp"></a> <!&textndash; http://nco.sf.net/nco.html#att_prp &textndash;>
-</html>
-<para>Defining new variables in terms of existing variables is a powerful
-feature of <command>ncap2</command>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="972">derived fields</indexterm></cindex>
-Derived fields inherit the metadata (i.e., attributes) of their
-ancestors, if any, in the script or input file.
-When the derived field is completely new (no identically-named ancestors
-exist), then it inherits the metadata (if any) of the left-most variable
-on the right hand side of the defining expression.
-This metadata inheritance is called <dfn>attribute propagation</dfn>.
-Attribute propagation is intended to facilitate well-documented
-data analysis, and we welcome suggestions to improve this feature.
-</para>
-<para>The only exception to this rule of attribute propagation is in cases of
-left hand casting (<pxref label="Left-hand-casting"><xrefnodename>Left hand casting</xrefnodename></pxref>).
-The user must manually define the proper metadata for variables defined
-using left hand casting.
-</para>
-<html endspaces=" ">
-<a name="syn"></a> <!&textndash; http://nco.sf.net/nco.html#syn &textndash;>
-</html>
-<node name="Syntax-of-ncap2-statements" spaces=" "><nodename>Syntax of ncap2 statements</nodename><nodenext spaces=" ">Expressions</nodenext><nodeprev spaces=" ">ncap2 netCDF Arithmetic Processor</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Syntax of <command>ncap2</command> statements</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="973">statement</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="974">syntax</indexterm></cindex>
-<para>Mastering <command>ncap2</command> is relatively simple.
-Each valid statement <var>statement</var> consists of standard forward
-algebraic expression.
-The <file>fl.nco</file>, if present, is simply a list of such statements,
-whitespace, and comments.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="975">C language</indexterm></cindex>
-The syntax of statements is most like the computer <w>language C</w>.
-The following characteristics <w>of C</w> are preserved:
-</para><table commandarg="asis" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="asis">Array syntax</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="976">array syntax</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="977"><code>[]</code> (array delimiters)</indexterm></cindex>
-<para>Arrays elements are placed within <code>[]</code> characters;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Array indexing</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="978">array indexing</indexterm></cindex>
-<para>Arrays are 0-based;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Array storage</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="979">array storage</indexterm></cindex>
-<para>Last dimension is most rapidly varying;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Assignment statements</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="980">assignment statement</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="981">semi-colon</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="982"><code>;</code> (end of statement)</indexterm></cindex>
-<para><w>A semi</w>-colon <samp>;</samp> indicates the end of an assignment statement.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Comments</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="983">comments</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="984"><code>/*...*/</code> (comment)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="985"><code>//</code> (comment)</indexterm></cindex>
-<para>Multi-line comments are enclosed within <code>/* */</code> characters.
-Single line comments are preceded by <code>//</code> characters.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Nesting</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="986">including files</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="987">nesting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="988"><code>#include</code></indexterm></cindex>
-<para>Files may be nested in scripts using <code>#include <var>script</var></code>.
-Note that the <code>#include</code> command is not followed by a semi-colon
-because it is a pre-processor directive, not an assignment statement.
-The filename <file>script</file> is interpreted relative to the run directory.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Attribute syntax</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="989">attribute syntax</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="990"><code>&arobase;</code> (attribute)</indexterm></cindex>
-<para>The at-sign <code>&arobase;</code> is used to delineate an attribute name from a
-variable name.
-</para></tableitem></tableentry></table>
-
-<html endspaces=" ">
-<a name="ncap_xpr"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_xpr &textndash;>
-</html>
-</subsection>
-<node name="Expressions" spaces=" "><nodename>Expressions</nodename><nodenext spaces=" ">Dimensions</nodenext><nodeprev spaces=" ">Syntax of ncap2 statements</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="991">expressions</indexterm></cindex>
-<subsection spaces=" "><sectiontitle>Expressions</sectiontitle>
-<para>Expressions are the fundamental building block of <command>ncap2</command>.
-Expressions are composed of variables, numbers, literals, and
-attributes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="992">C language</indexterm></cindex>
-The following <w>C operators</w> are &textldquo;overloaded&textrdquo; and work with scalars
-and multi-dimensional arrays:
-</para><example endspaces=" ">
-<pre xml:space="preserve">Arithmetic Operators: * / % + - ^
-Binary Operators: > >= < <= == != == || && >> <<
-Unary Operators: + - ++ -- !
-Conditional Operator: exp1 ? exp2 : exp3
-Assign Operators: = += -= /= *=
-</pre></example>
-
-<para>In the following section a <dfn>variable</dfn> also refers to a
-number literal which is read in as a scalar variable:
-</para>
-<para><strong>Arithmetic and Binary Operators </strong>
-</para>
-<para>Consider <emph>var1 &textrsquo;op&textrsquo; var2</emph>
-</para>
-<para><strong>Precision</strong>
-</para><itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/></itemprepend>
-<listitem spaces=" "><prepend>•</prepend><para>When both operands are variables, the result has the precision of the higher precision operand.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>When one operand is a variable and the other an attribute, the result has the precision of the variable.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>When both operands are attributes, the result has the precision of the more precise attribute.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>The exponentiation operator &textldquo;^&textrdquo; is an exception to the above rules.
-When both operands have type less than <code>NC_FLOAT</code>, the result is <code>NC_FLOAT</code>.
-When either type is <code>NC_DOUBLE</code>, the result is also <code>NC_DOUBLE</code>.
-</para></listitem></itemize>
-<!-- c csz got to here editing -->
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="993">broadcasting variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="994">rank</indexterm></cindex>
-<para><strong>Rank</strong>
-</para><itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/> </itemprepend>
-<listitem spaces=" "><prepend>•</prepend><para>The Rank of the result is generally equal to Rank of the operand
-that has the greatest number of dimensions.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>If the dimensions in var2 are a subset of the dimensions in var1
-then its possible to make var2 conform to var1 through broadcasting and
-or dimension reordering.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>Broadcasting a variable means creating data in non-existing
-dimensions by copying data in existing dimensions.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>More specifically: If the numbers of dimensions in var1 is greater
-than or equal to the number of dimensions in var2 then an attempt is
-made to make var2 conform to var1 ,else var1 is made to conform to
-var2. If conformance is not possible then an error message will be
-emitted and script execution will cease.&linebreak;
-</para></listitem></itemize>
-
-<noindent></noindent> <para>Even though the logical operators return True(1) or False(0)
-they are treated in the same way as the arithmetic operators with regard
-to precision and rank.&linebreak;
-Examples:
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-dimensions: time=10, lat=2, lon=4
-Suppose we have the two variables:
-
-double P(time,lat,lon);
-float PZ0(lon,lat); // PZ0=1,2,3,4,5,6,7,8;
-
-Consider now the expression:
- PZ=P-PZ0
-
-PZ0 is made to conform to P and the result is
-PZ0 =
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
- 1,3,5,7,2,4,6,8,
-
-Once the expression is evaluated then PZ will be of type double;
-
-Consider now
- start=four-att_var at double_att; // start =-69 and is of type intger;
- four_pow=four^3.0f // four_pow=64 and is of type float
- three_nw=three_dmn_var_sht*1.0f; // type is now float
- start at n1=att_var at short_att*att_var at int_att;
- // start at n1=5329 and is type int
-</verbatim>
-</example>
-
-<noindent></noindent> <para><strong>Binary Operators</strong> &linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="995">binary Operators</indexterm></cindex>
-Unlike C the binary operators return an array of values.
-There is no such thing as short circuiting with the AND/OR operators.
-Missing values are carried into the result in the same way they are with
-the arithmetic operators.
-When an expression is evaluated in an if() the missing values are
-treated as true.&linebreak;
-The binary operators are, in order of precedence:
-</para><example endspaces=" ">
-<pre xml:space="preserve">
-! Logical Not
-----------------------------
-<< Less Than Selection
->> Greater Than Selection
-----------------------------
-> Greater than
->= Greater than or equal to
-< Less than
-<= Less than or equal to
-----------------------------
-== Equal to
-!= Not equal to
-----------------------------
-&& Logical AND
-----------------------------
-|| Logical OR
-----------------------------
-</pre></example>
-
-<para>To see all operators: <pxref label="Operator-precedence-and-associativity"><xrefnodename>Operator precedence and associativity</xrefnodename></pxref>
-Examples:
-</para><example endspaces=" ">
-<pre xml:space="preserve">tm1=time>2 && time <7; // tm1=0, 0, 1, 1, 1, 1, 0, 0, 0, 0 double
-tm2=time==3 || time>=6; // tm2=0, 0, 1, 0, 0, 1, 1, 1, 1, 1 double
-tm3=int(!tm1); // tm3=1, 1, 0, 0, 0, 0, 1, 1, 1, 1 int
-tm4=tm1 && tm2; // tm4=0, 0, 1, 0, 0, 1, 0, 0, 0, 0 double
-tm5=!tm4; // tm5=1, 1, 0, 1, 1, 0, 1, 1, 1, 1 double
-</pre></example>
-
-<noindent></noindent> <para><strong>Regular Assign Operator</strong>&linebreak;
-<noindent></noindent> <emph>var1 &textrsquo;=&textrsquo; exp1</emph> &linebreak;
-If var1 does not already exist in Output then var1 is written to Output with the values and dimensions from expr1. If var1 already exists in Output, then the only requirement on expr1 is that the number of elements must match the number already on disk. The type of expr1 is converted if necessary to the disk type.
-</para>
-<noindent></noindent> <para><strong> Other Assign Operators +=,-=,*=./= </strong>&linebreak;
- <noindent></noindent> <emph>var1 &textrsquo;ass_op&textrsquo; exp1 </emph>&linebreak;
-if exp1 is a variable and it doesn&textrsquo;t conform to var1 then an attempt is made to make it conform to var1. If exp1 is an attribute it must have unity size or else have the same number of elements as var1. If expr1 has a different type to var1 the it is converted to the var1 type.
-</para><example endspaces=" ">
-<pre xml:space="preserve">z1=four+=one*=10 // z1=14 four=14 one=10;
-time-=2 // time= -1,0,1,2,3,4,5,6,7,8
-</pre></example>
-
-<noindent></noindent> <para><strong>Increment/Decrement Operators &linebreak;</strong>
-These work in a similar fashion to their regular C counterparts. If say the variable <code>four</code> is input only then the statement <code>++four</code> effectively means read <code>four</code> from input increment each element by one, then write the new values to Output;
-</para>
-<para>Example:
-</para><example endspaces=" ">
-<pre xml:space="preserve">n2=++four; n2=5, four=5
-n3=one--+20; n3=21 one=0;
-n4=--time; n4=time=0.,1.,2.,3.,4.,5.,6.,7.,8.,9.;
-</pre></example>
-
-<noindent></noindent> <para><strong>Conditional Operator ?: </strong> &linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="996">conditional Operator</indexterm></cindex>
-<noindent></noindent> <emph>exp1 ? exp2 : exp3 </emph> &linebreak;
-The conditional operator (or ternary Operator) is a succinct way
-of writing an if/then/else. If exp1 evaluates to true then exp2 is
-returned else exp3 is returned.
-</para>
-<para>Example:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-weight_avg=weight.avg();
-weight_avg at units= (weight_avg == 1 ? "kilo" : "kilos");
-PS_nw=PS-(PS.min() > 100000 ? 100000 : 0);
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="clp"></a> <!&textndash; http://nco.sf.net/nco.html#clp &textndash;>
-<a name="clipping"></a> <!&textndash; http://nco.sf.net/nco.html#clipping &textndash;>
-</html>
-<noindent></noindent> <para><strong>Clipping Operators</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="997">clipping operators</indexterm></cindex>
-</para><table commandarg="asis" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="asis"><< Less-than Clipping&linebreak;</itemformat></item>
-</tableterm><tableitem><para>For arrays, the less-than selection operator selects all values in the
-left operand that are less than the corresponding value in the right
-operand.
-If the value of the left side is greater than or equal to the
-corresponding value of the right side, then the right side value is
-placed in the result
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">>> Greater-than Clipping&linebreak;</itemformat></item>
-</tableterm><tableitem><para>For arrays, the greater-than selection operator selects all values in
-the left operand that are greater than the corresponding value in the
-right operand.
-If the value of the left side is less than or equal to the corresponding
-value of the right side, then the right side value is placed in the
-result.
-</para></tableitem></tableentry></table>
-
-<para>Example:
-</para><example endspaces=" ">
-<pre xml:space="preserve">RDM2=RDM >> 100.0 // 100,100,100,100,126,126,100,100,100,100 double
-RDM2=RDM << 90s // 1, 9, 36, 84, 90, 90, 84, 36, 9, 1 int
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_dims"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_dims &textndash;>
-<a name="defdim"></a> <!&textndash; http://nco.sf.net/nco.html#defdim &textndash;>
-</html>
-</subsection>
-<node name="Dimensions" spaces=" "><nodename>Dimensions</nodename><nodenext spaces=" ">Left hand casting</nodenext><nodeprev spaces=" ">Expressions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Dimensions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="998">defining dimensions in <command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="999"><code>defdim()</code></indexterm></cindex>
-<para>Dimensions are defined in Output using the <code>defdim()</code> function.
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("cnt",10); # Dimension size is fixed by default
-defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dimension)
-defdim("cnt",10,0); # Dimension is unlimited (record dimension)
-defdim("cnt",10,1); # Dimension size is fixed
-defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed
-</pre></example>
-
-<para>This dimension name must then be prefixed with a dollar-sign <samp>$</samp>
-when referred to in method arguments or left-hand-casting, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">new_var[$cnt]=time;
-temperature[$time,$lat,$lon]=35.5;
-temp_avg=temperature.avg($time);
-</pre></example>
-
-<para>The <code>size</code> method allows the dimension size to be used in an
-arithmetic expression:
-</para><example endspaces=" ">
-<pre xml:space="preserve">time_avg=time.total() / $time.size;
-</pre></example>
-
-<para>Increase the size of a new variable by one and set new member to zero:
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("cnt_new",$cnt.size+1);
-new_var[$cnt_new]=0.0;
-new_var(0:($cnt_new.size-2))=old_var;
-</pre></example>
-
-<noindent></noindent> <para><strong>Dimension Abbreviations &linebreak;</strong>
-It is possible to use dimension abbreviations as method arguments:&linebreak;
-<code>$0</code> is the first dimension of a variable&linebreak;
-<code>$1</code> is the second dimension of a variable&linebreak;
-<code>$n</code> is the n+1 dimension of a variable&linebreak;
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">float four_dmn_rec_var(time,lat,lev,lon);
-double three_dmn_var_dbl(time,lat,lon);
-
-four_nw=four_dmn_rev_var.reverse($time,$lon)
-four_nw=four_dmn_rec_var.reverse($0,$3);
-
-four_avg=four_dmn_rec_var.avg($lat,$lev);
-four_avg=four_dmn_rec_var.avg($1,$2);
-
-three_mw=three_dmn_var_dbl.permute($time,$lon,$lat);
-three_mw=three_dmn_var_dbl.permute($0,$2,$1);
-</pre></example>
-
-<noindent></noindent> <para><strong>ID Quoting &linebreak;</strong>
-If the dimension name contains non-regular characters use ID quoting.
-See <pxref label="ID-Quoting"><xrefnodename>ID Quoting</xrefnodename></pxref>
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("a--list.A",10);
-A1['$a--list.A']=30.0;
-</pre></example>
-
-<noindent></noindent> <para><strong>GOTCHA &linebreak;</strong>
-<noindent></noindent> It is not possible to manually define in Output any dimensions that exist in Input. When a variable from Input appears in an expression or statement its dimensions in Input are automagically copied to Output (if they are not already present)
-</para>
-<html endspaces=" ">
-<a name="lhc"></a> <!&textndash; http://nco.sf.net/nco.html#lhc &textndash;>
-<a name="lhs"></a> <!&textndash; http://nco.sf.net/nco.html#lhs &textndash;>
-</html>
-</subsection>
-<node name="Left-hand-casting" spaces=" "><nodename>Left hand casting</nodename><nodenext spaces=" ">Arrays and hyperslabs</nodenext><nodeprev spaces=" ">Dimensions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Left hand casting</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1000">hybrid coordinate system</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1001">left hand casting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1002"><acronym><acronymword>LHS</acronymword></acronym></indexterm></cindex>
-<para>The following examples demonstrate the utility of the
-<dfn>left hand casting</dfn> ability of <command>ncap2</command>.
-Consider first this simple, artificial, example.
-If <var>lat</var> and <var>lon</var> are one dimensional coordinates of
-dimensions <var>lat</var> and <var>lon</var>, respectively, then addition
-of these two one-dimensional arrays is intrinsically ill-defined because
-whether <var>lat_lon</var> should be dimensioned <var>lat</var> by <var>lon</var>
-or <var>lon</var> by <var>lat</var> is ambiguous (assuming that addition is to
-remain a <dfn>commutative</dfn> procedure, i.e., one that does not depend on
-the order of its arguments).
-Differing dimensions are said to be <dfn>orthogonal</dfn> to one another,
-and sets of dimensions which are mutually exclusive are orthogonal
-as a set and any arithmetic operation between variables in orthogonal
-dimensional spaces is ambiguous without further information.
-</para>
-<para>The ambiguity may be resolved by enumerating the desired dimension
-ordering of the output expression inside square brackets on the
-left hand side (<acronym><acronymword>LHS</acronymword></acronym>) of the equals sign.
-This is called <dfn>left hand casting</dfn> because the user resolves the
-dimensional ordering of the <acronym><acronymword>RHS</acronymword></acronym> of the expression by
-specifying the desired ordering on the <acronym><acronymword>LHS</acronymword></acronym>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'lat_lon[lat,lon]=lat+lon' in.nc out.nc
-ncap2 -s 'lon_lat[lon,lat]=lat+lon' in.nc out.nc
-</pre></example>
-<para>The explicit list of dimensions on the <acronym><acronymword>LHS</acronymword></acronym>, <code>[lat,lon]</code>
-resolves the otherwise ambiguous ordering of dimensions in
-<var>lat_lon</var>.
-In effect, the <acronym><acronymword>LHS</acronymword></acronym> <dfn>casts</dfn> its rank properties onto the
-<acronym><acronymword>RHS</acronymword></acronym>.
-Without <acronym><acronymword>LHS</acronymword></acronym> casting, the dimensional ordering of <var>lat_lon</var>
-would be undefined and, hopefully, <command>ncap2</command> would print an error
-message.
-</para>
-<para>Consider now a slightly more complex example.
-In geophysical models, a coordinate system based on
-a blend of terrain-following and density-following surfaces is
-called a <dfn>hybrid coordinate system</dfn>.
-In this coordinate system, four variables must be manipulated to
-obtain the pressure of the vertical coordinate:
-<var>PO</var> is the domain-mean surface pressure offset (a scalar),
-<var>PS</var> is the local (time-varying) surface pressure (usually two
-horizontal spatial dimensions, i.e. latitude by longitude), <var>hyam</var>
-is the weight given to surfaces of constant density (one spatial
-dimension, pressure, which is orthogonal to the horizontal
-dimensions), and <var>hybm</var> is the weight given to surfaces of
-constant elevation (also one spatial dimension).
-This command constructs a four-dimensional pressure <code>prs_mdp</code>
-from the four input variables of mixed rank and orthogonality:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'prs_mdp[time,lat,lon,lev]=P0*hyam+PS*hybm' in.nc out.nc
-</pre></example>
-<para>Manipulating the four fields which define the pressure in a hybrid
-coordinate system is easy with left hand casting.
-</para>
-<html endspaces=" ">
-<a name="ncap_arr"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_arr &textndash;>
-</html>
-</subsection>
-<node name="Arrays-and-hyperslabs" spaces=" "><nodename>Arrays and hyperslabs</nodename><nodenext spaces=" ">Attributes</nodenext><nodeprev spaces=" ">Left hand casting</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Arrays and hyperslabs</sectiontitle>
-
-<findex index="fn" spaces=" "><indexterm index="fn" number="16" mergedindex="cp">array</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1003"><code>array</code> function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1004">arrays</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1005">findgen-equivalent</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1006">indgen-equivalent</indexterm></cindex>
-<para>Generating a regularly spaced one-dimensional array with <command>ncap2</command>
-is simple with the <code>array()</code> function.
-The syntax is
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=array(val_srt,val_ncr,$dmn_nm); // One-dimensional output
-var_out=array(val_srt,val_ncr,var_tpl); // Multi-dimensional output
-</pre></example>
-<noindent></noindent>
-<para>where the arguments are the starting value <var>val_srt</var>,
-incremental value <var>val_ncr</var>, and, for one-dimensional output, the
-single dimension <code>$dmn_nm</code>, or, for multi-dimensional output, a
-template variable <code>var_tpl</code>, i.e., a variable with the same shape
-as the desired output.
-The type of <code>var_out</code> will be the same as <code>val_srt</code>.
-Be sure to encode this type with the appropriate decimal point
-and floating point suffix when <code>val_srt</code> is a &textldquo;naked constant&textrdquo;
-rather than a variable.
-For example, to produce an array of shorts (signed two-byte integers),
-integers (signed four-byte integers), unsigned 64-bit integers,
-floats, or doubles use
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=array(1s,val_ncr,$dmn_nm); // NC_SHORT array
-var_out=array(1,val_ncr,$dmn_nm); // NC_INT array
-var_out=array(1ull,val_ncr,$dmn_nm); // NC_UINT64 array
-var_out=array(1f,val_ncr,$dmn_nm); // NC_FLOAT array
-var_out=array(1.,val_ncr,$dmn_nm); // NC_DOUBLE array
-</pre></example>
-
-<para>Once the associated dimensions have been defined, the start and
-increment arguments may be supplied as values, mathmatical expressions,
-or variables:
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=array(1,1,$time); // 1,2,3,4,5,6,7,8,9,10
-var_out=array(1+2-2,one,$time); // 1,2,3,4,5,6,7,8,9,10
-var_out=array(1,2,three_dmn_rec_var); // 1,3,5,...155,157,159
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1007">hyperslabs</indexterm></cindex>
-<para>Hyperslabs in <command>ncap2</command> are more limited than hyperslabs with the
-other <acronym><acronymword>NCO</acronymword></acronym> operators.
-<command>ncap2</command> does not understand the shell command-line syntax
-used to specify multi-slabs, wrapped co-ordinates, negative stride or
-coordinate value limits.
-However with a bit of syntactic magic they are all are possible.
-<command>ncap2</command> accepts (in fact, it requires) <var>N</var>-hyperslab
-arguments for a variable of rank <var>N</var>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">var1(arg1,arg2 ... argN);
-</pre></example>
-<para>where each hyperslab argument is of the form
-</para><example endspaces=" ">
-<pre xml:space="preserve">start:end:stride
-</pre></example>
-<para>and the arguments for different dimensions are separated by commas.
-<noindent></noindent>
-If <var>start</var> is omitted, it defaults to zero.
-If <var>end</var> is omitted, it defaults to dimension size minus one.
-If <var>stride</var> is omitted, it defaults to one.
-</para><sp value="1" line=" 1"></sp>
-<noindent></noindent> <para>If a single value is present then it is assumed that that
-dimension collapses to a single value (i.e., a cross-section).
-The number of hyperslab arguments MUST equal the variable&textrsquo;s rank.
-</para><sp value="1" line=" 1"></sp>
-
-<noindent></noindent> <para><strong>Hyperslabs on the Right Hand Side of an assign&linebreak;</strong>
-</para>
-<para>A simple 1D example:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-($time.size=10)
-od[$time]={20,22,24,26,28,30,32,34,36,38};
-
-od(7); // 34
-od(7:); // 34,36,38
-od(:7); // 20,22,24,26,28,30,32,34
-od(::4); // 20,28,36
-od(1:6:2) // 22,26,30
-od(:) // 20,22,24,26,28,30,32,34,36,38
-</verbatim>
-</example>
-
-<para>A more complex three dimensional example:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-($lat.size=2,$lon.size=4)
-th[$time,$lat,$lon]=
- {1, 2, 3, 4, 5, 6, 7, 8,
- 9,10,11,12,13,14,15,16,
- 17,18,19,20,21,22,23,24,
- -99,-99,-99,-99,-99,-99,-99,-99,
- 33,34,35,36,37,38,39,40,
- 41,42,43,44,45,46,47,48,
- 49,50,51,52,53,54,55,56,
- -99,58,59,60,61,62,63,64,
- 65,66,67,68,69,70,71,72,
- -99,74,75,76,77,78,79,-99 };
-
-th(1,1,3); // 16
-th(2,0,:); // 17, 18, 19, 20
-th(:,1,3); // 8, 16, 24, -99, 40, 48, 56, 64, 72, -99
-th(::5,:,0:3:2); // 1, 3, 5, 7, 41, 43, 45, 47
-</verbatim>
-</example>
-
-<para>If hyperslab arguments collapse to a single value (a cross-section has
-been specified), then that dimension is removed from the returned
-variable.
-If all the values collapse then a scalar variable is returned.
-So, for example, the following is valid:
-</para><example endspaces=" ">
-<pre xml:space="preserve">th_nw=th(0,:,:)+th(9,:,:);
-// th_nw has dimensions $lon,$lat
-// NB: the time dimension has become degenerate
-</pre></example>
-
-<para>The following is invalid:
-</para><example endspaces=" ">
-<pre xml:space="preserve">th_nw=th(0,:,0:1)+th(9,:,0:1);
-</pre></example>
-<para>because the <code>$lon</code> dimension now only has two elements.
-The above can be calculated by using a LHS cast with
-<code>$lon_nw</code> as replacement dim for <code>$lon</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("lon_nw",2);
-th_nw[$lat,$lon_nw]=th(0,:,0:1) +th(9,:,0:1);
-</pre></example>
-
-<noindent></noindent> <para><strong>Hyperslabs on the Left Hand Side of an assign&linebreak;</strong>
-<noindent></noindent> When hyperslabing on the LHS, the expression on the RHS must
-evaluate to a scalar or a variable/attribute with the same number of
-elements as the LHS hyperslab.
-Set all elements of the last record to zero:
-</para><example endspaces=" ">
-<pre xml:space="preserve">th(9,:,:)=0.0;
-</pre></example>
-<para>Set first element of each lon element to 1.0:
-</para><example endspaces=" ">
-<pre xml:space="preserve">th(:,:,0)=1.0;
-</pre></example>
-<para>One may hyperslab on both sides of an assign.
-For example, this sets the last record to the first record:
-</para><example endspaces=" ">
-<pre xml:space="preserve">th(9,:,:)=th(0,:,:);
-</pre></example>
-<para>Say <var>th0</var> represents pressure at height=0 and
-<var>th1</var> represents pressure at height=1.
-Then it is possible to insert these hyperslabs into the records
-</para><example endspaces=" ">
-<pre xml:space="preserve">prs[$time,$height,$lat,$lon]=0.0;
-prs(:,0,:,:)=th0;
-prs(:,1,:,:)=th1
-</pre></example>
-
-<noindent></noindent> <para><strong>Reverse method</strong>&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1008">reverse()</indexterm></cindex>
-Use the <code>reverse()</code> method to reverse a dimension&textrsquo;s elements in a
-variable with at least one dimension.
-This is equivalent to a negative stride, e.g.,
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-th_rv=th(1 ,:,:).reverse($lon); // {12,11,10,9 }, {16,15,14,13}
-od_rv=od.reverse($time); // {38,36,34,32,30,28,26,24,22,20}
-</verbatim>
-</example>
-
-<noindent></noindent> <para><strong>Permute method</strong>p&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1009">permute()</indexterm></cindex>
-Use the <code>permute()</code> method to swap the dimensions of a variable.
-The number and names of dimension arguments must match the dimensions in
-the variable.
-If the first dimension in the variable is of record type then this must
-remain the first dimension.
-If you want to change the record dimension then consider using
-<command>ncpdq</command>.
-</para>
-<para>Consider the variable:
-</para><example endspaces=" ">
-<pre xml:space="preserve">float three_dmn_var(lat,lev,lon);
-three_dmn_var_prm=three_dmn_var.permute($lon,$lat,$lev);
-// The permuted values are
-three_dmn_var_prm=
- 0,4,8,
- 12,16,20,
- 1,5,9,
- 13,17,21,
- 2,6,10,
- 14,18,22,
- 3,7,11,
- 15,19,23;
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_att"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_att &textndash;>
-</html>
-</subsection>
-<node name="Attributes" spaces=" "><nodename>Attributes</nodename><nodenext spaces=" ">Number literals</nodenext><nodeprev spaces=" ">Arrays and hyperslabs</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Attributes</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1010">attributes<command>ncap2</command></indexterm></cindex>
-<noindent></noindent> <para>Attributes are referred to by <emph>var_nm&arobase;att_nm</emph> &linebreak;
-All the following are valid statements:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-global at text="Test Attributes"; /* Assign a global variable attribute */
-a1[$time]=time*20;
-a1 at long_name="Kelvin";
-a1 at min=a1.min();
-a1 at max=a1.max();
-a1 at min++;
---a1 at max; q
-a1(0)=a1 at min;
-a1($time.size-1)=a1 at max;
-</verbatim>
-</example>
-
-<para>A <emph>value list</emph> can be used on the RHS of an assign...
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1011">value list</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-a1 at trip1={1,2,3} ;
-a1 at triplet={a1 at min,(a1 at min+a1@max)/2,a1 at max};
-</verbatim>
-</example>
-<para>The netCDF specification allows all attribute types to have a size
-greater than one.
-The maximum is defined by <code>NC_MAX_ATTRS</code>.
-The following is an <command>ncdump</command> of the metadata for variable <var>a1</var>
-</para><example endspaces=" ">
-<pre xml:space="preserve">double a1(time) ;
- a1:long_name = "Kelvin" ;
- a1:max = 199. ;
- a1:min = 21. ;
- a1:trip1 = 1, 2, 3 ;
- a1:triplet = 21., 110., 199. ;
-</pre></example>
-
-<para>The <code>size()</code> method can be used with attributes.
-For example, to save an attribute text string in a variable,
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("sng_len", a1 at long_name.size());
-sng_arr[$sng_len]=a1 at long_name; // sng_arr now contains "Kelvin"
-</verbatim>
-</example>
-<para>Attributes defined in a script are stored in memory and are written to Output after script completion.
-To stop the attribute being written use the ram_delete() method or use a bogus variable name.
-</para>
-<noindent></noindent> <para><strong>Attribute Propagation and Inheritance</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1012">attribute propagation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1013">attribute inheritance</indexterm></cindex>
-</para><itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/></itemprepend>
-<beforefirstitem> </beforefirstitem><listitem spaces=" "><prepend>•</prepend><para>Attribute propagation occurs in a regular assign statement. The variable being defined on the LHS gets copies of the attributes from the leftermost variable on the RHS.
- </para></listitem><listitem spaces=" "><prepend>•</prepend><para>Attribute Inheritance: The LHS variable &textldquo;inherits&textrdquo; attributes from an Input variable with the same name
- </para></listitem><listitem spaces=" "><prepend>•</prepend><para>It is possible to have a regular assign statement for which both propagation and inheritance occur.
-</para></listitem></itemize>
-
-<example endspaces=" ">
-<pre xml:space="preserve">// prs_mdp inherits attributes from P0:
-prs_mdp[time,lat,lon,lev]=P0*hyam+hybm*PS;
-// th_min inherits attributes from three_dmn_var_dbl:
-th_min=1.0 + 2*three_dmn_var_dbl.min($time);
-</pre></example>
-
-<para>If the attribute name contains non-regular characters use ID quoting. See <pxref label="ID-Quoting"><xrefnodename>ID Quoting</xrefnodename></pxref>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-'b..m1 at c--lost'=23;
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="ncap_num"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_num &textndash;>
-</html>
-</subsection>
-<node name="Number-literals" spaces=" "><nodename>Number literals</nodename><nodenext spaces=" ">if statement</nodenext><nodeprev spaces=" ">Attributes</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Number literals</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1014">number literals <command>ncap2</command></indexterm></cindex>
-<para>The table below lists the postfix character(s) to add to a number
-literal for type cohesion.
-To use the new netCDF4 types <acronym><acronymword>NCO</acronymword></acronym> must be compiled/linked to
-the netCDF4 library and the output file must be <acronym><acronymword>HDF5</acronymword></acronym>.
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-n1[$time]=1UL; // n1 will now by type @code{NC_UINT}
-n2[$lon]=4b; // n2 will be of type @code{NC_BYTE}
-n3[$lat]=5ull; // n3 will be of type @code{NC_UINT64}
-n3 at a1=6.0d; // attribute will be type @code{NC_DOUBLE}
-n3 at a2=-666L; // attribute will be type @code{NC_INT}
-</verbatim>
-</example>
-
-<para>A floating point number without a postfix will default to
-<code>NC_DOUBLE</code>.
-An integer without a postfix will default to type <code>NC_INT</code>.
-There is no postfix for characters, use a quoted string instead.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-n4[$rlev]=0.1 // n4 will be of type @code{NC_DOUBLE}
-n5[$lon_grd]=2.0 // n5 will be of type @code{NC_DOUBLE}
-n6[$gds_crd]=2e3; // n6 will be of type @code{NC_DOUBLE}
-n7[$gds_crd]=2e3f; // n7 will be of type @code{NC_FLOAT}
-n6 at a1=41; // attribute will be type @code{NC_INT}
-n6 at a2=-21; // attribute will be type @code{NC_INT}
-n6 at units="kelvin" // attribute will be type @code{NC_CHAR}
-</verbatim>
-</example>
-
-<table commandarg="asis" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="asis"><strong>netCDF3/4 Types</strong></itemformat></item>
-</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">b|B </itemformat></item>
-</tableterm><tableitem> <para><code>NC_BYTE</code>, a signed 1-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">none </itemformat></item>
-</tableterm><tableitem> <para><code>NC_CHAR</code>, an ISO/ASCII character
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">s|S </itemformat></item>
-</tableterm><tableitem> <para><code>NC_SHORT</code>, a signed 2-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">l|L </itemformat></item>
-</tableterm><tableitem> <para><code>NC_INT</code>, a signed 4-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">f|F </itemformat></item>
-</tableterm><tableitem> <para><code>NC_FLOAT</code>, a single-precision (4-byte) floating point number
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">d|D</itemformat></item>
-</tableterm><tableitem> <para><code>NC_DOUBLE</code>, a double-precision (8-byte) floating point number
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis"><strong>netCDF4 Types</strong></itemformat></item>
-</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">ub|UB </itemformat></item>
-</tableterm><tableitem> <para><code>NC_UBYTE</code>, an unsigned 1-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">us|US </itemformat></item>
-</tableterm><tableitem> <para><code>NC_USHORT</code>, an unsigned 2-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">u|U|ul|UL </itemformat></item>
-</tableterm><tableitem> <para><code>NC_UINT</code>, an unsigned 4-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">ll|LL </itemformat></item>
-</tableterm><tableitem> <para><code>NC_INT64</code>, a signed 8-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">ull|ULL </itemformat></item>
-</tableterm><tableitem> <para><code>NC_UINT64</code>, an unsigned 8-byte integer
-</para></tableitem></tableentry></table>
-
-<html endspaces=" ">
-<a name="ncap_if"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_if &textndash;>
-</html>
-</subsection>
-<node name="if-statement" spaces=" "><nodename>if statement</nodename><nodenext spaces=" ">print statement</nodenext><nodeprev spaces=" ">Number literals</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>if statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1015">if()</indexterm></cindex>
-<para>The syntax of the if statement is similar to its C counterpart.
-The <emph>Conditional Operator (ternary operator)</emph> has also been
-implemented.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-if(exp1)
- stmt1;
-else if(exp2)
- stmt2;
-else
- stmt3;
-
-# Can use code blocks as well:
-if(exp1){
- stmt1;
- stmt1a;
- stmt1b;
-}else if(exp2)
- stmt2;
-else{
- stmt3;
- stmt3a;
- stmt3b;
-}
-</verbatim>
-</example>
-
-<!-- comment Truth -->
-<noindent></noindent> <para>For a variable or attribute expression to be logically true
-all its non-missing value elements must be logically true, i.e.,
-non-zero.
-The expression can be of any type.
-<w>Unlike C</w> there is no short-circuiting of an expression with the
-OR (<code>||</code>) and AND (<code>&&</code>) operators.
-The whole expression is evaluated regardless if one of the AND/OR
-operands are True/False.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Simple example
-if(time>0)
- print("All values of time are greater than zero\n");
-else if( time<0)
- print("All values of time are less than zero\n");
-else {
- time_max=time.max();
- time_min=time.min();
- print("min value of time=");print(time_min,"%f");
- print("max value of time=");print(time_max,"%f");
-}
-
-# Example from ddra.nco
-if(fl_typ==fl_typ_gcm){
- var_nbr_apx=32;
- lmn_nbr=1.0*var_nbr_apx*varsz_gcm_4D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_gcm_4D; // Block size
- lmn_nbr_wgt=dmnsz_gcm_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
-}else if(fl_typ==fl_typ_stl){
- var_nbr_apx=8;
- lmn_nbr=1.0*var_nbr_apx*varsz_stl_2D; /* [nbr] Variable size */
- if(nco_op_typ==nco_op_typ_avg){
- lmn_nbr_avg=1.0*var_nbr_apx*varsz_stl_2D; // Block size
- lmn_nbr_wgt=dmnsz_stl_lat; /* [nbr] Weight size */
- } // !nco_op_typ_avg
-} // !fl_typ
-</verbatim>
-</example>
-
-<noindent></noindent> <para><strong>Conditional Operator &linebreak;</strong>
-</para><example endspaces=" ">
-<pre xml:space="preserve">// netCDF4 needed for this example
-th_nw=(three_dmn_var_sht >= 0 ? three_dmn_var_sht.uint() : \
- three_dmn_var_sht.int());
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_prn"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_prn &textndash;>
-</html>
-</subsection>
-<node name="print-statement" spaces=" "><nodename>print statement</nodename><nodenext spaces=" ">Missing values ncap2</nodenext><nodeprev spaces=" ">if statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>print statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1016">print() <command>ncap2</command></indexterm></cindex>
-<example endspaces=" ">
-<pre xml:space="preserve">print(variable_name/attribute name/string, format string);
-</pre></example>
-
-<noindent></noindent> <para>The print function takes a variable name or attribute name or
-a quoted string and prints the contents in a in a similar fashion to
-<code>ncks -H</code>.
-There is also an optional C-language style format string argument.
-Currently the print function cannot print <acronym><acronymword>RAM</acronymword></acronym> variables or expressions
-such as <code>'print(var_msk*3+4)'</code>.
-To print an expression, first evaluate it as a non-<acronym><acronymword>RAM</acronymword></acronym> variable (so it
-will be saved and can be printed), and then print the variable.
-</para>
-<noindent></noindent> <para>examples
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-print(lon);
-lon[0]=0
-lon[1]=90
-lon[2]=180
-lon[3]=270
-
-print(lon_2D_rrg,"%3.2f,");
-0.00,0.00,180.00,0.00,180.00,0.00,180.00,0.00,
-
-print(mss_val_fst at _FillValue);
-mss_val_fst at _FillValue, size = 1 NC_FLOAT, value = -999
-
-print("This function \t is monotonic\n");
-This function is monotonic
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="ncap_miss"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_miss &textndash;>
-</html>
-</subsection>
-<node name="Missing-values-ncap2" spaces=" "><nodename>Missing values ncap2</nodename><nodenext spaces=" ">Methods and functions</nodenext><nodeprev spaces=" ">print statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Missing values ncap2</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1017">missing values ncap2</indexterm></cindex>
-<para>Missing values operate slightly differently in <command>ncap2</command>
-Consider the expression where op is any of the following operators (excluding &textrsquo;=&textrsquo;)
-</para><example endspaces=" ">
-<pre xml:space="preserve">Arithmetic operators ( * / % + - ^ )
-Binary Operators ( >, >= <, <= ==, !=,==,||,&&, >>,<< )
-Assign Operators ( +=,-=,/=, *= )
-
-var1 'op' var2
-</pre></example>
-
-<noindent></noindent> <para>If var1 has a missing value then this is the value used in the
-operation, otherwise the missing value for var2 is used.
-If during the element-by-element operation an element from either
-operand is equal to the missing value then the missing value is carried
-through.
-In this way missing values &textrsquo;percolate&textrsquo; or propagate through an
-expression.&linebreak;
-Missing values associated with Output variables are stored in memory and
-are written to disk after the script finishes.
-During script execution its possible (and legal) for the missing value
-of a variable to take on several different values.
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Consider the variable:
-int rec_var_int_mss_val_int(time); =-999,2,3,4,5,6,7,8,-999,-999;
-rec_var_int_mss_val_int:_FillValue = -999;
-
-n2=rec_var_int_mss_val_int + rec_var_int_mss_val_int.reverse($time);
-
-n2=-999,-999,11,11,11,11,11,11,999,-999;
-</pre></example>
-
-<html endspaces=" ">
-<a name="set_miss"></a> <!&textndash; http://nco.sf.net/nco.html#set_miss &textndash;>
-<a name="get_miss"></a> <!&textndash; http://nco.sf.net/nco.html#get_miss &textndash;>
-<a name="change_miss"></a> <!&textndash; http://nco.sf.net/nco.html#change_miss &textndash;>
-<a name="number_miss"></a> <!&textndash; http://nco.sf.net/nco.html#number_miss &textndash;>
-</html>
-<para>The following methods manipulate missing value information associated
-with a variable.
-They only work on variables in Output.
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">set_miss(expr)</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1018"><code>set_miss()</code></indexterm></cindex>
- <para>The numeric argument <var>expr</var> becomes the new missing value,
- overwriting the old missing value, if any.
- The argument given is converted if necessary to the variable type.
- NB: This only changes the missing value attribute.
- Missing values in the original variable remain unchanged, and thus
- are no long considered missing values.
- They are &textldquo;orphaned&textrdquo;.
- Thus <code>set_miss()</code> is normally used only when creating new
- variables.
- The intrinsic function <code>change_miss()</code> (see below) is typically
- used to edit values of existing variables.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">change_miss(expr)</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1019"><code>change_miss()</code></indexterm></cindex>
- <para>Sets or changes (any pre-existing) missing value attribute and missing
- data values to <var>expr</var>.
- NB: This is an expensive function since all values must be examined.
- Use this function when changing missing values for pre-existing
- variables.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">get_miss() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1020"><code>get_miss()</code></indexterm></cindex>
- <para>Returns the missing value of a variable.
- If the variable exists in Input and Output then the missing value of
- the variable in Output is returned.
- If the variable has no missing value then an error is returned.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">delete_miss()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1021"><code>delete_miss()</code></indexterm></cindex>
- <para>Delete the missing value associated with a variable.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">number_miss()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1022"><code>number_miss()</code></indexterm></cindex>
- <para>Count the number of missing values a variable contains.
-</para></tableitem></tableentry></table>
-
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-th=three_dmn_var_dbl;
-th.change_miss(-1e10d);
-/* Set values less than 0 or greater than 50 to missing value */
-where(th < 0.0 || th > 50.0) th=th.get_miss();
-
-# Another example:
-new[$time,$lat,$lon]=1.0;
-new.set_miss(-997.0);
-
-// Extract only elements divisible by 3
-where (three_dmn_var_dbl%3 == 0)
- new=three_dmn_var_dbl;
-elsewhere
- new=new.get_miss();
-
-// Print missing value and variable summary
-mss_val_nbr=three_dmn_var_dbl.number_miss();
-print(three_dmn_var_dbl at _FillValue);
-print("Number of missing values in three_dmn_var_dbl: ");
-print(mss_val_nbr,"%d");
-print(three_dmn_var_dbl);
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="ncap_mtd"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_mtd &textndash;>
-</html>
-</subsection>
-<node name="Methods-and-functions" spaces=" "><nodename>Methods and functions</nodename><nodenext spaces=" ">RAM variables</nodenext><nodeprev spaces=" ">Missing values ncap2</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Methods and functions</sectiontitle>
-
-<para>The convention within this document is that methods can be used as
-functions.
-However, functions are not and cannot be used as methods.
-Methods can be daisy-chained d and their syntax is cleaner than functions.
-Method names are reserved words and CANNOT be used as variable names.
-The command <code>ncap2 -f</code> shows the complete list of methods available
-on your build.
-</para><example endspaces=" ">
-<pre xml:space="preserve">n2=sin(theta)
-n2=theta.sin()
-n2=sin(theta)^2 + cos(theta)^2
-n2=theta.sin().pow(2) + theta.cos()^2
-</pre></example>
-
-<para>This statement chains together methods to convert three_dmn_var_sht to
-type double, average it, then convert this back to type short:
-</para><example endspaces=" ">
-<pre xml:space="preserve">three_avg=three_dmn_var_sht.double().avg().short();
-</pre></example>
-
-<sp value="1" line=" 1"></sp>
-<noindent></noindent> <para><strong>Aggregate Methods &linebreak;</strong>
-<noindent></noindent> These methods mirror the averaging types available in <command>ncwa</command>. The arguments to the methods are the dimensions to average over. Specifying no dimensions is equivalent to specifying all dimensions i.e., averaging over all dimensions. A masking variable and a weighting variable can be manually created and applied as needed.
-</para>
-<table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">avg()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1023">avg()</indexterm></cindex>
-<para>Mean value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sqravg()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1024">sqravg()</indexterm></cindex>
-<para>Square of the mean
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">avgsqr()</itemformat></item>
-</tableterm><tableitem><para>Mean of sum of squares
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">max()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1025">max()</indexterm></cindex>
-<para>Maximum value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">min()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1026">min()</indexterm></cindex>
-<para>Minimum value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mabs()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1027">mabs()</indexterm></cindex>
-<para>Maximum absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mebs()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1028">mebs()</indexterm></cindex>
-<para>Mean absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">mibs()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1029">mibs()</indexterm></cindex>
-<para>Minimum absolute value
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rms()</itemformat></item>
-</tableterm><tableitem><para>Root-mean-square (normalize by <var>N</var>)
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rmssdn()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1030">rmssdn()</indexterm></cindex>
-<para>Root-mean square (normalize by <var>N-1</var>)
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ttl() or total()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1031">ttl()</indexterm></cindex>
-<para>Sum of values
-</para></tableitem></tableentry></table>
-
-<example endspaces=" ">
-<pre xml:space="preserve">// Average a variable over time
-four_time_avg=four_dmn_rec_var($time);
-</pre></example>
-
-<sp value="1" line=" 1"></sp>
-<noindent></noindent> <para><strong> Packing Methods &linebreak; </strong>
-For more information see <pxref label="Packed-data"><xrefnodename>Packed data</xrefnodename></pxref> and <pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>&linebreak;
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">pack() & pack_short()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1032">pack()</indexterm></cindex>
-<para>The default packing algorithm is applied and variable is packed to <code>NC_SHORT</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_byte()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1033">pack_byte()</indexterm></cindex>
-<para>Variable is packed to <code>NC_BYTE</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_short()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1034">pack_short()</indexterm></cindex>
-<para>Variable is packed to <code>NC_SHORT</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pack_int()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1035">pack_int()</indexterm></cindex>
-<para>Variable is packed to <code>NC_INT</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">unpack()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1036">unpack()</indexterm></cindex>
-<para>The standard unpacking algorithm is applied.
-</para></tableitem></tableentry></table>
-
-<noindent></noindent> <para><strong>Basic Methods &linebreak;</strong>
-These methods work with variables and attributes. They have no arguments
-</para>
-<table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">size() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1037">size()</indexterm></cindex>
-<para>Total number of elements
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ndims()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1038">ndims()</indexterm></cindex>
-<para>Number of dimensions in variable
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">type() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1039">type()</indexterm></cindex>
-<para>Returns the netcdf type (see previous section)
-</para></tableitem></tableentry></table>
-
-<sp value="1" line=" 1"></sp>
-<noindent></noindent> <para><strong>Utility Methods &linebreak;</strong>
-These functions are used to manipulate missing values and <acronym><acronymword>RAM</acronymword></acronym> variables.
-<pxref label="Missing-values-ncap2"><xrefnodename>Missing values ncap2</xrefnodename></pxref>
-</para>
-<table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">set_miss(expr)</itemformat></item>
-</tableterm><tableitem> <para>Takes one argument the missing value. Sets or overwrites the existing missing value. The argument given is converted if necessary to the variable type
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">change_miss(expr)</itemformat></item>
-</tableterm><tableitem> <para>Changes the missing value elements of the variable to the new missing value (n.b. an expensive function).
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">get_miss() </itemformat></item>
-</tableterm><tableitem> <para>Returns the missing value of a variable in Input or Output
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">delete_miss()</itemformat></item>
-</tableterm><tableitem> <para>Deletes the missing value associated with a variable.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ram_write()</itemformat></item>
-</tableterm><tableitem> <para>Writes a <acronym><acronymword>RAM</acronymword></acronym> variable to disk i.e., converts it to a regular disk type variable
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ram_delete()</itemformat></item>
-</tableterm><tableitem> <para>Deletes a <acronym><acronymword>RAM</acronymword></acronym> variable or an attribute
-</para></tableitem></tableentry></table>
-
-<sp value="1" line=" 1"></sp>
-<noindent></noindent> <para><strong>PDQ Methods &linebreak;</strong>
-See <pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">reverse(dim args)</itemformat></item>
-</tableterm><tableitem> <para>Reverses the dimension ordering of elements in a variable.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">permute(dim args)</itemformat></item>
-</tableterm><tableitem> <para>Re-shapes variables by re-ordering the dimensions. All the dims of the variable must be specified in the arguments. A limitation of this permute (unlike ncpdq) is that the record dimension cannot be re-assigned.
-</para></tableitem></tableentry></table>
-<para>// Swap dimensions about and reorder along lon
-</para><example endspaces=" ">
-<pre xml:space="preserve">lat_2D_rrg_new=lat_2D_rrg.permute($lon,$lat).reverse($lon);
-lat_2D_rrg_new=0,90,-30,30,-30,30,-90,0
-</pre></example>
-
-<sp value="1" line=" 1"></sp>
-<noindent></noindent> <para><strong>Type Conversion Methods &linebreak;</strong>
-<noindent></noindent> These methods allow <command>ncap2</command> to convert variables and attributes to the different netcdf types. For more details on automatic and manual type conversion see (<pxref label="Type-Conversion"><xrefnodename>Type Conversion</xrefnodename></pxref>). You may only use the new netCDF4 types if you have compiled/links <acronym><acronymword>NCO</acronymword></acronym> with the netCDF4 library and the Output file is HDF5.
-</para>
-<table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code"><strong>netCDF3/4 Types</strong></itemformat></item>
-</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">byte() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1040">byte()</indexterm></cindex>
- <para>convert to <code>NC_BYTE</code>, a signed 1-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">char()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1041">char()</indexterm></cindex>
- <para>convert to <code>NC_CHAR</code>, an ISO/ASCII character
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">short() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1042">sshort()</indexterm></cindex>
- <para>convert to <code>NC_SHORT</code>, a signed 2-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">int() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1043">int()</indexterm></cindex>
- <para>convert to <code>NC_INT</code>, a signed 4-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">float()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1044">float()</indexterm></cindex>
- <para>convert to <code>NC_FLOAT</code>, a single-precision (4-byte) floating point number
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">double() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1045">double()</indexterm></cindex>
- <para>convert to <code>NC_DOUBLE</code>, a double-precision (8-byte) floating point number
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code"><strong>netCDF4 Types</strong></itemformat></item>
-</tableterm></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ubyte() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1046">ubyte()</indexterm></cindex>
- <para>convert to <code>NC_UBYTE</code>, an unsigned 1-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ushort() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1047">ushort()</indexterm></cindex>
- <para>convert to <code>NC_USHORT</code>, an unsigned 2-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">uint()</itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1048">uint()</indexterm></cindex>
- <para>convert to <code>NC_UINT</code>, an unsigned 4-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">int64() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1049">int64()</indexterm></cindex>
- <para>convert to <code>NC_INT64</code>, a signed 8-byte integer
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">uint64() </itemformat></item>
-</tableterm><tableitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1050">unit64()</indexterm></cindex>
- <para>convert to <code>NC_UINT64</code>, an unsigned 8-byte integer
-</para></tableitem></tableentry></table>
-
-<noindent></noindent> <para><strong>Intrinsic Mathematical Methods &linebreak;</strong>
-The list of mathematical methods is system dependant.
-For the full list <pxref label="Intrinsic-mathematical-methods"><xrefnodename>Intrinsic mathematical methods</xrefnodename></pxref>
-</para>
-<para>All the mathematical methods take a single argument except <code>atan2()</code>
-and <code>pow()</code> which take two.
-If the operand type is less than <emph>float</emph> then the result will be of
-type <emph>float</emph>.
-Arguments of type <emph>double</emph> yield results of type <emph>double</emph>.
-Like the other methods, you are free to use the mathematical methods as functions.
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">n1=pow(2,3.0f) // n1 type float
-n2=atan2(2,3.0) // n2 type double
-n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n3 type double
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_ram"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_ram &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1051"><acronym><acronymword>RAM</acronymword></acronym> variables</indexterm></cindex>
-</subsection>
-<node name="RAM-variables" spaces=" "><nodename>RAM variables</nodename><nodenext spaces=" ">Where statement</nodenext><nodeprev spaces=" ">Methods and functions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle><acronym><acronymword>RAM</acronymword></acronym> variables</sectiontitle>
-<para>Unlike regular variables, <acronym><acronymword>RAM</acronymword></acronym> variables are never written to disk.
-Hence using <acronym><acronymword>RAM</acronymword></acronym> variables in place of regular variables (especially
-within loops) significantly increases execution speed.
-Variables that are frequently accessed within <code>for</code> or <code>where</code>
-clauses provide the greatest opportunities for optimization.
-To declare and define a <acronym><acronymword>RAM</acronymword></acronym> variable simply prefix the variable name
-with an asterisk (<code>*</code>) when the variable is declared/initialized.
-To delete a <acronym><acronymword>RAM</acronymword></acronym> variables (and recover their memory) use the
-<code>ram_delete()</code> method.
-To write a <acronym><acronymword>RAM</acronymword></acronym> variable to disk (like a regular variable) use
-<code>ram_write()</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1052">ram_write()</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1053">ram_delete()</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">*temp[$time,$lat,$lon]=10.0; // Cast
-*temp_avg=temp.avg($time); // Regular assign
-temp.ram_delete(); // Delete RAM variable
-temp_avg.ram_write(); // Write Variable to output
-
-// Create and increment a RAM variable from "one" in Input
-*one++;
-// Create RAM variables from the variables three and four in Input.
-// Multiply three by 10 and add it to four.
-*four+=*three*=10; // three=30, four=34
-</pre></example>
-
-<html endspaces=" ">
-<a name="where"></a> <!&textndash; http://nco.sf.net/nco.html#where &textndash;>
-<a name="ncap_whr"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_whr &textndash;>
-<a name="ncap_where"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_where &textndash;>
-</html>
-</subsection>
-<node name="Where-statement" spaces=" "><nodename>Where statement</nodename><nodenext spaces=" ">Loops</nodenext><nodeprev spaces=" ">RAM variables</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Where statement</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1054">where()</indexterm></cindex>
-<para>A <code>where()</code> combines the definition and application of a mask all in one go and can lead to succinct code.
-The full syntax of a <code>where()</code> statement is as follows:
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-// Single assign (the 'elsewhere' block is optional)
-where(mask)
- var1=expr1;
-elsewhere
- var1=expr2;
-
-// Multiple assigns
-where(mask){
- var1=expr1;
- var2=expr2;
- ...
-}elsewhere{
- var1=expr3
- var2=expr4
- var3=expr5;
- ...
-}
-</verbatim>
-</example>
-
-<itemize commandarg="bullet" spaces=" " endspaces=" "><itemprepend><formattingcommand command="bullet"/></itemprepend>
-<listitem spaces=" "><prepend>•</prepend><para>The only expression allowed in the predicate of a where is assign,
-i.e., &textrsquo;var=expr&textrsquo;.
-This assign differs from a regular <command>ncap2</command> assign.
-The LHS var must already exist in Input or Output.
-The RHS expression must evaluate to a scalar or a variable/attribute of
-the same size as the LHS variable.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>Consider when both the LHS and RHS are variables:
-For every element where mask condition is True, the corresponding LHS
-variable element is re-assigned to its partner element on the RHS.
-In the elsewhere part the mask is logically inverted and the assign
-process proceeds as before.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>If the mask dimensions are a subset of the LHS variable&textrsquo;s
-dimensions, then it is made to conform; if it cannot be made to conform
-then script execution halts.
-</para></listitem><listitem spaces=" "><prepend>•</prepend><para>Missing values in the mask evaluate to False in the where
-code/block statement and to True in the elsewhere block/statement.
-LHS variable elements set to missing value are not re-assigned.
-For these reasons, do not explicitly reference missing values in the
-masking condition, e.g., <code>where(foo=foo.get_missing()) foo=1;</code>
-will not work as expected.
-</para></listitem></itemize>
-
-<para>Example:
-Consider the variables <code>float lon_2D_rct(lat,lon);</code> and
-<code>float var_msk(lat,lon);</code>.
-Suppose we wish to multiply by two the elements for which <code>var_msk</code>
-<w>equals 1</w>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">where(var_msk==1) lon_2D_rct=2*lon_2D_rct;
-</pre></example>
-<para>Suppose that we have the variable <code>int RDM(time)</code> and that we want
-to set its values less than 8 or greater than 80 <w>to 0</w>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">where(RDM < 8 || RDM > 80) RDM=0;
-</pre></example>
-
-<html endspaces=" ">
-<a name="WRF"></a> <!&textndash; http://nco.sf.net/nco.html#WRF &textndash;>
-<a name="SLD"></a> <!&textndash; http://nco.sf.net/nco.html#SLD &textndash;>
-<a name="wrf"></a> <!&textndash; http://nco.sf.net/nco.html#wrf &textndash;>
-<a name="sld"></a> <!&textndash; http://nco.sf.net/nco.html#sld &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1055">Weather and Research Forecast (<acronym><acronymword>WRF</acronymword></acronym>) Model</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1056">Swath-like Data (<acronym><acronymword>SLD</acronymword></acronym>)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1057"><acronym><acronymword>WRF</acronymword></acronym> (Weather and Research Forecast Model)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1058"><acronym><acronymword>SLD</acronymword></acronym> (Swath-like Data)</indexterm></cindex>
-<para>Consider irregularly gridded data, described using <w>rank 2</w> coordinates:
-<code>double lat(south_north,east_west)</code>,
-<code>double lon(south_north,east_west)</code>,
-<code>double temperature(south_north,east_west)</code>.
-This type of structure is often found in regional weather/climate model
-(such as <acronym><acronymword>WRF</acronymword></acronym>) output, and in satellite swath data.
-For this reason we call it &textldquo;Swath-like Data&textrdquo;, or <acronym><acronymword>SLD</acronymword></acronym>.
-To find the average temperature in a region bounded by
-[<var>lat_min</var>,<var>lat_max</var>] and [<var>lon_min</var>,<var>lon_max</var>]:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-temperature_msk[$south_north,$east_west]=0.0;
-where((lat >= lat_min && lat <= lat_max) && (lon >= lon_min && lon <= lon_max))
- temperature_msk=temperature;
-elsewhere
- temperature_msk=temperature at _FillValue;
-
-temp_avg=temperature_msk.avg();
-temp_max=temperature.max();
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="NARR"></a> <!&textndash; http://nco.sf.net/nco.html#NARR &textndash;>
-<a name="narr"></a> <!&textndash; http://nco.sf.net/nco.html#narr &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1059"><acronym><acronymword>NARR</acronymword></acronym> (North American Regional Reanalysis)a</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1060">North American Regional Reanalysis (<acronym><acronymword>NARR</acronymword></acronym>)</indexterm></cindex>
-<para>For North American Regional Reanalysis (<acronym><acronymword>NARR</acronymword></acronym>) data
-(example
-<uref><urefurl>http://dust.ess.uci.edu/diwg/narr_uwnd.199605.nc</urefurl><urefdesc spaces=" ">dataset</urefdesc></uref>)
-the procedure looks like this
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncap2 -O -v -S ~/narr.nco ${DATA}/hdf/narr_uwnd.199605.nc ~/foo.nc
-</verbatim>
-</example>
-<para>where <file>narr.nco</file> is an <command>ncap2</command> script like this:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-/* North American Regional Reanalysis (NARR) Statistics
- NARR stores grids with 2-D latitude and longitude, aka Swath-like Data (SLD)
- Here we work with three variables:
- lat(y,x), lon(y,x), and uwnd(time,level,y,x);
- To study sub-regions of SLD, we use masking techniques:
- 1. Define mask as zero times variable to be masked
- Then mask automatically inherits variable attributes
- And average below will inherit mask attributes
- 2. Optionally, create mask as RAM variable (as below with asterisk *)
- NCO does not write RAM variable to output
- Masks are often unwanted, and can be big, so this speeds execution
- 3. Example could be extended to preserve mean lat and lon of sub-region
- Follow uwnd example to do this: lat_msk=0.0*lat ... lat_avg=lat.avg($y,$x) */
-*uwnd_msk=0.0*uwnd;
-where((lat >= 35.6 && lat <= 37.0) && (lon >= -100.5 && lon <= -99.0))
- uwnd_msk=uwnd;
-elsewhere
- uwnd_msk=uwnd at _FillValue;
-
-// Average only over horizontal dimensions x and y (preserve level and time)
-uwnd_avg=uwnd_msk.avg($y,$x);
-</verbatim>
-</example>
-<para>Stripped of comments and formatting, this example is a three-statement
-script executed by a one-line command.
-<acronym><acronymword>NCO</acronymword></acronym> needs only this meagre input to unpack and copy the input
-data and attributes, compute the statistics, and then define and write
-the output file.
-Unless the comments pointed out that wind variable (<code>uwnd</code>) was
-four-dimensional and the latitude/longitude grid variables were both
-two-dimensional, there would be no way to tell.
-This shows how <acronym><acronymword>NCO</acronymword></acronym> hides from the user the complexity of
-analyzing multi-dimensional <acronym><acronymword>SLD</acronymword></acronym>.
-We plan to extend such <acronym><acronymword>SLD</acronymword></acronym> features to more operators soon.
-</para>
-<html endspaces=" ">
-<a name="ncap_lop"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_lop &textndash;>
-</html>
-</subsection>
-<node name="Loops" spaces=" "><nodename>Loops</nodename><nodenext spaces=" ">Include files</nodenext><nodeprev spaces=" ">Where statement</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Loops</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1061">while()</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1062">for()</indexterm></cindex>
-<para><command>ncap2</command> supplies <command>for()</command> loops and <command>while()</command> loops.
-They are completely unoptimized so use them only with <acronym><acronymword>RAM</acronymword></acronym>
-variables unless you want thrash your disk to death.
-To break out of a loop use the <command>break</command> command.
-To iterate to the next cycle use the <command>continue</command> command.
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-// Set elements in variable double temp(time,lat)
-// If element < 0 set to 0, if element > 100 set to 100
-*sz_idx=$time.size;
-*sz_jdx=$lat.size;
-
-for(*idx=0;idx<sz_idx;idx++)
- for(*jdx=0;jdx<sz_jdx;jdx++)
- if(temp(idx,jdx) > 100) temp(idx,jdx)=100.0;
- else if(temp(idx,jdx) < 0) temp(idx,jdx)=0.0;
-
-// Are values of co-ordinate variable double lat(lat) monotonic?
-*sz=$lat.size;
-
-for(*idx=1;idx<sz;idx++)
- if(lat(idx)-lat(idx-1) < 0.0) break;
-
-if(idx == sz) print("lat co-ordinate is monotonic\n");
- else print("lat co-ordinate is NOT monotonic\n");
-
-// Sum odd elements
-*idx=0;
-*sz=$lat_nw.size;
-*sum=0.0;
-
-while(idx<sz){
- if(lat(idx)%2) sum+=lat(idx);
- idx++;
-}
-
-ram_write(sum);
-print("Total of odd elements ");print(sum);print("\n");
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="ncap_inc"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_inc &textndash;>
-</html>
-</subsection>
-<node name="Include-files" spaces=" "><nodename>Include files</nodename><nodenext spaces=" ">Sort methods</nodenext><nodeprev spaces=" ">Loops</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Include files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1063"><command>include</command></indexterm></cindex>
-<para>The syntax of an <var>include-file</var> is:
-</para><example endspaces=" ">
-<pre xml:space="preserve">#include "script.nco"
-</pre></example>
-<para>The script filename is searched relative to the run directory.
-It is possible to nest include files to an arbitrary depth.
-A handy use of inlcude files is to store often used constants.
-Use <acronym><acronymword>RAM</acronymword></acronym> variables if you do not want these constants written to
-<var>output-file</var>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">// script.nco
-// Sample file to #include in ncap2 script
-*pi=3.1415926535; // RAM variable, not written to output
-*h=6.62607095e-34; // RAM variable, not written to output
-e=2.71828; // Regular (disk) variable, written to output
-</pre></example>
-
-<html endspaces=" ">
-<a name="srt"></a> <!&textndash; http://nco.sf.net/nco.html#srt &textndash;>
-<a name="sort"></a> <!&textndash; http://nco.sf.net/nco.html#sort &textndash;>
-<a name="remap"></a> <!&textndash; http://nco.sf.net/nco.html#remap &textndash;>
-</html>
-</subsection>
-<node name="Sort-methods" spaces=" "><nodename>Sort methods</nodename><nodenext spaces=" ">Irregular grids</nodenext><nodeprev spaces=" ">Include files</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle><command>sort</command> methods</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1064"><command>sort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1065"><command>asort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1066"><command>dsort</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1067"><command>remap</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1068"><command>unmap</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1069"><command>invert_map</command></indexterm></cindex>
-<para>In <acronym><acronymword>ncap2</acronymword></acronym> there are multiple ways to sort data.
-Beginning with <acronym><acronymword>NCO</acronymword></acronym> 4.1.0 (March, 2012), <acronym><acronymword>ncap2</acronymword></acronym>
-support six sorting functions:
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=sort(var_in,&srt_map); // Ascending sort
-var_out=asort(var_in,&srt_map); // Accending sort
-var_out=dsort(var_in,&srt_map); // Desending sort
-var_out=remap(var_in,srt_map); // Apply srt_map to var_in
-var_out=unmap(var_in,srt_map); // Reverse what srt_map did to var_in
-dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts srt_map
-</pre></example>
-<para>The first two functions, <command>sort()</command> and <command>asort()</command>
-sort, in ascending order, all the elements of <var>var_in</var> (which can be
-a variable or attribute) without regard to any dimensions.
-The third function, <command>dsort()</command> does the same but sorts in
-descending order.
-Remember that ascending and descending sorts are specified by
-<command>asort()</command> and <command>dsort()</command>, respectively.
-</para>
-<para>These three functions are overloaded to take a second, optional argument
-called the sort map <var>srt_map</var>, which should be supplied as a
-call-by-reference variable, i.e., preceded with an ampersand.
-If the sort map does not yet exist, then it will be created and
-returned as an integer type the same shape as the input variable.
-</para>
-<para>The output <var>var_out</var> of each sort function is a sorted version of
-the input, <var>var_in</var>.
-The output <var>var_out</var> of the two mapping functions the result of
-applying (with <command>remap()</command> or un-applying (with <command>unmap()</command>)
-the sort map <var>srt_map</var> to the input <var>var_in</var>.
-To apply the sort map with <command>remap()</command> the size of the variable
-must be exactly divisible by the size of the sort map.
-</para>
-<para>The final function <command>invert_map()</command> returns the so-called
-de-sorting map <var>dsr_map</var> which is inverse map of the input map
-<var>srt_map</var>.
-This gives the user access to both the forward and inverse sorting maps
-which can be useful in special situations.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-a1[$time]={10,2,3,4,6,5,7,3,4,1};
-a1_sort=sort(a1);
-print(a1_sort);
-// 1, 2, 3, 3, 4, 4, 5, 6, 7, 10;
-
-a2[$lon]={2,1,4,3};
-a2_sort=sort(a2,&a2_map);
-print(a2);
-// 1, 2, 3, 4
-print(a2_map);
-// 1, 0, 3, 2;
-</verbatim>
-</example>
-
-<para>If the map variable does not exist prior to the <command>sort()</command> call,
-then it will be created with the same shape as the input variable and be
-of type <code>NC_INT</code>.
-If the map variable already exists, then the only restriction is that it
-be of at least the same size as the input variable.
-To apply a map use <code>remap(var_in,srt_map)</code>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("nlat",5);
-
-a3[$lon]={2,5,3,7};
-a4[$nlat,$lon]={
- 1, 2, 3, 4,
- 5, 6, 7, 8,
- 9,10,11,12,
- 13,14,15,16,
- 17,18,19,20};
-
-a3_sort=sort(a3,&a3_map);
-print(a3_map);
-// 0, 2, 1, 3;
-
-a4_sort=remap(a4,a3_map);
-print(a4_sort);
-// 1, 3, 2, 4,
-// 5, 7, 6, 8,
-// 9,11,10,12,
-// 13,15,14,16,
-// 17,19,18,20;
-
-a3_map2[$nlat]={4,3,0,2,1};
-
-a4_sort2=remap(a4,a3_map2);
-print(a4_sort2);
-// 3, 5, 4, 2, 1
-// 8, 10, 9,7, 6,
-// 13,15,14,12,11,
-// 18,20,19,17,16
-</verbatim>
-</example>
-<para>As in the above example you may create your own sort map.
-To sort in descending order, apply the <code>reverse()</code> method after the
-<command>sort()</command>.
-</para>
-<para>Here is an extended example of how to use <command>ncap2</command> features to
-hyperslab an irregular region based on the values of a variable not a
-coordinate.
-The distinction is crucial: hyperslabbing based on dimensional indices
-or coordinate values is straightforward.
-Using the values of single or multi-dimensional variable to define a
-hyperslab is quite different.
-</para><example endspaces=" ">
-<pre xml:space="preserve">cat > ~/ncap2_foo.nco << 'EOF'
-// Purpose: Save irregular 1-D regions based on variable values
-
-// Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
-/* NB: Single quotes around EOF above turn off shell parameter
- expansion in "here documents". This in turn prevents the
- need for protecting dollarsign characters in NCO scripts with
- backslashes when the script is cut-and-pasted (aka "moused")
- from an editor or e-mail into a shell console window */
-
-/* Copy coordinates and variable(s) of interest into RAM variable(s)
- Benefits:
- 1. ncap2 defines writes all variables on LHS of expression to disk
- Only exception is RAM variables, which are stored in RAM only
- Repeated operations on regular variables takes more time,
- because changes are written to disk copy after every change.
- RAM variables are only changed in RAM so script works faster
- RAM variables can be written to disk at end with ram_write()
- 2. Script permutes variables of interest during processing
- Safer to work with copies that have different names
- This discourages accidental, mistaken use of permuted versions
- 3. Makes this script a more generic template:
- var_in instead of specific variable names everywhere */
-*var_in=one_dmn_rec_var;
-*crd_in=time;
-*dmn_in_sz=$time.size; // [nbr] Size of input arrays
-
-/* Create all other "intermediate" variables as RAM variables
- to prevent them from cluttering the output file.
- Mask flag and sort map are same size as variable of interest */
-*msk_flg=var_in;
-*srt_map=var_in;
-
-/* In this example we mask for all values evenly divisible by 3
- This is the key, problem-specific portion of the template
- Replace this where() condition by that for your problem
- Mask variable is Boolean: 1=Meets condition, 0=Fails condition */
-where(var_in % 3 == 0) msk_flg=1; elsewhere msk_flg=0;
-
-// print("msk_flg = ");print(msk_flg); // For debugging...
-
-/* The sort() routine is overloaded, and takes one or two arguments
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input
- msk_flg is not needed in its original order after sort()
- Hence we use msk_flg as both input to and output from sort()
- Doing this prevents the need to define a new, unneeded variable */
-msk_flg=sort(msk_flg,&srt_map);
-
-// Count number of valid points in mask by summing the one's
-*msk_nbr=msk_flg.total();
-
-// Define output dimension equal in size to number of valid points
-defdim("crd_out",msk_nbr);
-
-/* Now sort the variable of interest using the sort map and remap()
- The output, on the LHS, is the input re-arranged so that all points
- meeting the mask condition are contiguous at the end of the array
- Use same srt_map to hyperslab multiple variables of the same shape
- Remember to apply srt_map to the coordinate variables */
-crd_in=remap(crd_in,srt_map);
-var_in=remap(var_in,srt_map);
-
-/* Hyperslab last msk_nbr values of variable(s) of interest */
-crd_out[crd_out]=crd_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
-var_out[crd_out]=var_in((dmn_in_sz-msk_nbr):(dmn_in_sz-1));
-
-/* NB: Even though we created all variables possible as RAM variables,
- the original coordinate of interest, time, is written to the ouput.
- I'm not exactly sure why. For now, delete it from the output with:
- ncks -O -x -v time ~/foo.nc ~/foo.nc
- */
-EOF
-ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
-ncks -O -x -v time ~/foo.nc ~/foo.nc
-ncks ~/foo.nc
-</pre></example>
-
-<para>Here is an extended example of how to use <command>ncap2</command> features to
-sort multi-dimensional arrays based on the coordinate values along a
-single dimension.
-</para><example endspaces=" ">
-<pre xml:space="preserve">cat > ~/ncap2_foo.nco << 'EOF'
-/* Purpose: Sort multi-dimensional array based on coordinate values
- This example sorts the variable three_dmn_rec_var(time,lat,lon)
- based on the values of the time coordinate. */
-
-// Included in NCO User Guide at http://nco.sf.net/nco.html#sort
-
-// Randomize the time coordinate
-time=10.0*gsl_rng_uniform(time);
-//print("original randomized time =\n");print(time);
-
-/* The sort() routine is overloaded, and takes one or two arguments
- The first argument is a one dimensional array
- The second argument (optional) is the "sort map" (srt_map below)
- Pass the sort map by reference, i.e., prefix with an ampersand
- If the sort map does not yet exist, then it will be created and
- returned as an integer type the same shape as the input variable.
- The output of sort(), on the LHS, is a sorted version of the input */
-
-time=sort(time,&srt_map);
-//print("sorted time (ascending order) and associated sort map =\n");print(time);print(srt_map);
-
-/* sort() always sorts in ascending order
- The associated sort map therefore re-arranges the original,
- randomized time array into ascending order.
- There are two methods to obtain the descending order the user wants
- 1) We could solve the problem in ascending order (the default)
- and then apply the reverse() method to re-arrange the results.
- 2) We could change the sort map to return things in descending
- order of time and solve the problem directly in descending order. */
-
-// Following shows how to do method one:
-
-/* Expand the sort map to srt_map_3d, the size of the data array
- 1. Use data array to provide right shape for the expanded sort map
- 2. Coerce data array into an integer so srt_map_3d is an integer
- 3. Multiply data array by zero so 3-d map elements are all zero
- 4. Add the 1-d sort map to the 3-d sort map (NCO automatically resizes)
- 5. Add the spatial (lat,lon) offsets to each time index
- 6. de-sort using the srt_map_3d
- 7. Use reverse to obtain descending in time order
- Loops could accomplish the same thing (exercise left for reader)
- However, loops are slow for large datasets */
-
-/* Following index manipulation requires understanding correspondence
- between 1-d (unrolled, memory order of storage) and access into that
- memory as a multidimensional (3-d, in this case) rectangular array.
- Key idea to understand is how dimensionality affects offsets */
-// Copy 1-d sort map into 3-d sort map
-srt_map_3d=(0*int(three_dmn_rec_var))+srt_map;
-// Multiply base offset by factorial of lesser dimensions
-srt_map_3d*=$lat.size*$lon.size;
-lon_idx=array(0,1,$lon);
-lat_idx=array(0,1,$lat)*$lon.size;
-lat_lon_idx[$lat,$lon]=lat_idx+lon_idx;
-srt_map_3d+=lat_lon_idx;
-
-print("sort map 3d =\n");print(srt_map_3d);
-
-// Use remap() to re-map the data
-three_dmn_rec_var=remap(three_dmn_rec_var,srt_map_3d);
-
-// Finally, reverse data so time coordinate is descending
-time=time.reverse($time);
-//print("sorted time (descending order) =\n");print(time);
-three_dmn_rec_var=three_dmn_rec_var.reverse($time);
-
-// Method two: Key difference is srt_map=$time.size-srt_map-1;
-EOF
-ncap2 -O -v -S ~/ncap2_foo.nco ~/nco/data/in.nc ~/foo.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="grd"></a> <!&textndash; http://nco.sf.net/nco.html#grd &textndash;>
-<a name="rrg"></a> <!&textndash; http://nco.sf.net/nco.html#rrg &textndash;>
-<a name="rct"></a> <!&textndash; http://nco.sf.net/nco.html#rct &textndash;>
-</html>
-
-</subsection>
-<node name="Irregular-grids" spaces=" "><nodename>Irregular grids</nodename><nodenext spaces=" ">Bilinear interpolation</nodenext><nodeprev spaces=" ">Sort methods</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Irregular Grids</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1070">irregular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1071">rectangular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1072">non-rectangular grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1073">non-standard grids</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1074">mask</indexterm></cindex>
-<!-- c fxm need to edit rrg sxn beginning here -->
-<para><acronym><acronymword>NCO</acronymword></acronym> is capable of analyzing datasets for many different
-underlying coordinate grid types.
-netCDF was developed for and initially used with grids comprised of
-orthogonal dimensions forming a rectangular coordinate system.
-We call such grids <emph>standard</emph> grids.
-It is increasingly common for datasets to use metadata to describe
-much more complex grids.
-Let us first define three important coordinate grid properties:
-rectangularity, regularity, and fxm.
-</para>
-<para>Grids are <emph>regular</emph> if the spacing between adjacent is constant.
-For example, a 4-by-5 degree latitude-longitude grid is regular
-because the spacings between adjacent latitudes (<w>4 degrees</w>) are
-constant as are the (<w>5 degrees</w>) spacings between adjacent
-longitudes.
-Spacing in <emph>irregular</emph> grids depends on the location along the
-coordinate.
-Grids such as Gaussian grids have uneven spacing in latitude (points
-cluster near the equator) and so are irregular.
-</para>
-<para>Grids are <emph>rectangular</emph> if the number of elements in any
-dimension is not a function of any other dimension.
-For example, a T42 Gaussian latitude-longitude grid is rectangular
-because there are the same number of longitudes (128) for each of the
-(64) latitudes.
-Grids are <emph>non-rectangular</emph> if the elements in any dimension
-depend on another dimension.
-Non-rectangular grids present many special challenges to
-analysis software like <acronym><acronymword>NCO</acronymword></acronym>.
-</para>
-<para>Wrapped coordinates (<pxref label="Wrapped-Coordinates"><xrefnodename>Wrapped Coordinates</xrefnodename></pxref>), such as longitude,
-are independent of these grid properties (regularity,
-rectangularity).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1075">wrapped coordinates</indexterm></cindex>
-<para>The preferred <acronym><acronymword>NCO</acronymword></acronym> technique to analyze data on non-standard
-coordinate grids is to create a region mask with <command>ncap2</command>, and
-then to use the mask within <command>ncap2</command> for variable-specific
-processing, and/or with other operators (e.g., <command>ncwa</command>,
-<command>ncdiff</command>) for entire file processing.
-</para>
-<para>Before describing the construction of masks, let us review how
-irregularly gridded geoscience data are described.
-Say that latitude and longitude are stored as <var>R</var>-dimensional
-arrays and the product of the dimension sizes is the total number of
-elements N in the other variables.
-Geoscience applications tend to use <math><var>R</var>=1</math>,
-<math><var>R</var>=2</math>, and <math><var>R</var>=3</math>.
-</para>
-<para>If the grid is has no simple representation (e.g., discontinuous) then
-it makes sense to store all coordinates as 1D arrays with the same
-size as the number of grid points.
-These gridpoints can be completely independent of all the other (own
-weight, area, etc.).
-</para>
-<para><var>R</var>=1: lat(number_of_gridpoints) and lon(number_of_gridpoints)
-</para>
-<para>If the horizontal grid is time-invariant then <var>R</var>=2 is common:
-</para>
-<para><var>R</var>=2: lat(south_north,east_west) and lon(south_north,east_west)
-</para>
-<para>The Weather and Research Forecast (<acronym><acronymword>WRF</acronymword></acronym>) model uses <var>R</var>=3:
-</para>
-<para><var>R</var>=3: lat(time,south_north,east_west), lon(time,south_north,east_west)
-</para>
-<para>and so supports grids that change with time.
-</para>
-<para>Grids with <var>R</var> > 1 often use missing values to indicated empty points.
-For example, so-called &textldquo;staggered grids&textrdquo; will use fewer east_west
-points near the poles and more near the equator. netCDF only accepts
-rectangular arrays so space must be allocated for the maximum number
-of east_west points at all latitudes. Then the application writes
-missing values into the unused points near the poles.
-</para>
-<para>We demonstrate the <command>ncap2</command> analysis technique for irregular
-regions by constructing a mask for an <var>R</var>=2 grid.
-We wish to find, say, the mean temperature within
-[<var>lat_min</var>,<var>lat_max</var>] and [<var>lon_min</var>,<var>lon_max</var>]:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'mask_var= (lat >= lat_min && lat <= lat_max) && \
- (lon >= lon_min && lon <= lon_max);' in.nc out.nc
-</pre></example>
-<para>Arbitrarily shaped regions can be defined by more complex conditional
-statements.
-Once defined, masks can be applied to specific variables,
-and to entire files:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'temperature_avg=(temperature*mask_var).avg()' in.nc out.nc
-ncwa -a lat,lon -m mask_var -w area in.nc out.nc
-</pre></example>
-<para>Crafting such commands on the command line is possible though unwieldy.
-In such cases, a script is often cleaner and allows you to document the
-procedure:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-cat > ncap2.in << 'EOF'
-mask_var = (lat >= lat_min && lat <= lat_max) && (lon >= lon_min && > lon <= lon_max);
-if(mask_var.total() > 0){ // Check that mask contains some valid values
- temperature_avg=(temperature*mask_var).avg(); // Average temperature
- temperature_max=(temperature*mask_var).max(); // Maximum temperature
-}
-EOF
-ncap2 -S ncap2.in in.nc out.nc
-</verbatim>
-</example>
-
-<ignore>
-http://foehn.colorado.edu/wrfout_to_cf/wrfout_to_cf.ncl
-ncl 'file_in="wrfout.nc"' 'file_out="wrfpost.nc"' wrfout_to_cf.ncl
-ncl 'file_in="wrfout_d02_2013-10-04_20:00:00"' 'file_out="wrfout_d02_2013-10-04_20:00:00_cf.nc"' wrfout_to_cf.ncl
-ncl 'file_in="wrfout_v2_Lambert"' 'file_out="wrfout_v2_Lambert.nc"' wrfout_to_cf.ncl
-</ignore>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1076"><acronym><acronymword>WRF</acronymword></acronym></indexterm></cindex>
-<para>Grids like those produced by the <acronym><acronymword>WRF</acronymword></acronym> model are complex because
-one must use global metadata to determine the grid staggering and
-offsets to translate <code>XLAT</code> and <code>XLONG</code> into real latitudes,
-longitudes, and missing points.
-The <acronym><acronymword>WRF</acronymword></acronym> grid documentation should describe this.
-For <acronym><acronymword>WRF</acronymword></acronym> files creating regional masks looks, in general, like
-</para><example endspaces=" ">
-<pre xml:space="preserve">mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);
-</pre></example>
-
-<para>A few notes:
-Irregular regions are the union of arrays lat/lon_min/max&textrsquo;s.
-The mask procedure is identical for all <var>R</var>.
-<!-- c fxm need to edit rrg sxn down to here -->
-</para>
-<html endspaces=" ">
-<a name="bln_ntp"></a> <!&textndash; http://nco.sf.net/nco.html#bln_ntp &textndash;>
-<a name="bil_int"></a> <!&textndash; http://nco.sf.net/nco.html#bil_int &textndash;>
-</html>
-</subsection>
-<node name="Bilinear-interpolation" spaces=" "><nodename>Bilinear interpolation</nodename><nodenext spaces=" ">GSL special functions</nodenext><nodeprev spaces=" ">Irregular grids</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Bilinear interpolation</sectiontitle>
-<noindent></noindent> <para>As of version 4.0.0 <acronym><acronymword>NCO</acronymword></acronym> has internal routines to
-perform bilinear interpolation on gridded data sets.
-In mathematics, bilinear interpolation is an extension of linear
-interpolation for interpolating functions of two variables on a regular
-grid.
-The idea is to perform linear interpolation first in one direction, and
-then again in the other direction.
-</para>
-<para>Suppose we have an irregular grid of data <code>temperature[lat,lon]</code>,
-with co-ordinate vars <code>lat[lat], lon[lon]</code>.
-We wish to find the temperature at an arbitary point [<var>X</var>,<var>Y</var>]
-within the grid.
-If we can locate lat_min,lat_max and lon_min,lon_max such that
-<code>lat_min <= X <= lat_max</code> and <code>lon_min <= Y <= lon_max</code>
-then we can interpolate in two dimensions the temperature at
-[<var>X</var>,<var>Y</var>].
-</para>
-<para>The general form of the <command>ncap2</command> interpolation function is
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_in_x,grid_in_y)
-</pre></example>
-<para>where
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">grid_in</itemformat></item>
-</tableterm><tableitem><para>Input function data.
-Usually a two dimensional variable.
-It must be of size <code>grid_in_x.size()*grid_in_y.size()</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">grid_out</itemformat></item>
-</tableterm><tableitem><para>This variable is the shape of <code>var_out</code>.
-Usually a two dimensional variable.
-It must be of size <code>grid_out_x.size()*grid_out_y.size()</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">grid_out_x</itemformat></item>
-</tableterm><tableitem><para><var>X</var> output values
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">grid_out_y</itemformat></item>
-</tableterm><tableitem><para><var>Y</var> output values
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">grid_in_x</itemformat></item>
-</tableterm><tableitem><para><var>X</var> input values values. Must be monotonic (increasing or decreasing).
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">grid_in_y</itemformat></item>
-</tableterm><tableitem><para><var>Y</var> input values values. Must be monotonic (increasing or decreasing).
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>Prior to calculations all arguments are converted to type
-<code>NC_DOUBLE</code>.
-After calculations <code>var_out</code> is converted to the input type of
-<code>grid_in</code>.
-</para>
-<para>Suppose the first part of an <command>ncap2</command> script is
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("X",4);
-defdim("Y",5);
-
-// Temperature
-T_in[$X,$Y]=
- {100, 200, 300, 400, 500,
- 101, 202, 303, 404, 505,
- 102, 204, 306, 408, 510,
- 103, 206, 309, 412, 515.0 };
-
-// Coordinate variables
-x_in[$X]={0.0,1.0,2.0,3.01};
-y_in[$Y]={1.0,2.0,3.0,4.0,5};
-</verbatim>
-</example>
-<para>Now we interpolate with the following variables:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("Xn",3);
-defdim("Yn",4);
-T_out[$Xn,$Yn]=0.0;
-x_out[$Xn]={0.0,0.02,3.01};
-y_out[$Yn]={1.1,2.0,3,4};
-
-var_out=bilinear_interp(T_in,T_out,x_out,y_out,x_in,y_in);
-print(var_out);
-// 110, 200, 300, 400,
-// 110.022, 200.04, 300.06, 400.08,
-// 113.3, 206, 309, 412 ;
-</verbatim>
-</example>
-
-<para>It is possible to interpolate a single point:
-</para><example endspaces=" ">
-<pre xml:space="preserve">var_out=bilinear_interp(T_in,0.0,3.0,4.99,x_in,y_in);
-print(var_out);
-// 513.920594059406
-</pre></example>
-
-<noindent></noindent> <para><strong>Wrapping and Extrapolation</strong> &linebreak;
-<noindent></noindent> The function <code>bilinear_interp_wrap()</code> takes the same
-arguments as <code>bilinear_interp()</code> but performs wrapping (<var>Y</var>)
-and extrapolation (<var>X</var>) for points off the edge of the grid.
-If the given range of longitude is say (25-335) and we have a point at
-20 degrees, then the endpoints of the range are used for the
-interpolation.
-This is what wrapping means.
-For wrapping to occur <var>Y</var> must be longitude and must be in the range
-(0,360) or (-180,180).
-There are no restrictions on the longitude (<var>X</var>) values, though
-typically these are in the range (-90,90).
-This <command>ncap2</command> script illustrates both wrapping and extrapolation
-of end points:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("lat_in",6);
-defdim("lon_in",5);
-
-// Coordinate input vars
-lat_in[$lat_in]={-80,-40,0,30,60.0,85.0};
-lon_in[$lon_in]={30, 110, 190, 270, 350.0};
-
-T_in[$lat_in,$lon_in]=
- {10,40,50,30,15,
- 12,43,52,31,16,
- 14,46,54,32,17,
- 16,49,56,33,18,
- 18,52,58,34,19,
- 20,55,60,35,20.0 };
-
-defdim("lat_out",4);
-defdim("lon_out",3);
-
-// Coordinate variables
-lat_out[$lat_out]={-90,0,70,88.0};
-lon_out[$lon_out]={0,190,355.0};
-
-T_out[$lat_out,$lon_out]=0.0;
-
-T_out=bilinear_interp_wrap(T_in,T_out,lat_out,lon_out,lat_in,lon_in);
-print(T_out);
-// 13.4375, 49.5, 14.09375,
-// 16.25, 54, 16.625,
-// 19.25, 58.8, 19.325,
-// 20.15, 60.24, 20.135 ;
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="gsl"></a> <!&textndash; http://nco.sf.net/nco.html#gsl &textndash;>
-</html>
-</subsection>
-<node name="GSL-special-functions" spaces=" "><nodename>GSL special functions</nodename><nodenext spaces=" ">GSL interpolation</nodenext><nodeprev spaces=" ">Bilinear interpolation</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>GSL special functions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1077"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
-<noindent></noindent> <para>As of version 3.9.6 (released January, 2009), <acronym><acronymword>NCO</acronymword></acronym>
-can link to the <acronym><acronymword>GNU</acronymword></acronym> Scientific Library (<acronym><acronymword>GSL</acronymword></acronym>).
-<command>ncap2</command> can access most <acronym><acronymword>GSL</acronymword></acronym> special functions including
-Airy, Bessel, error, gamma, beta, hypergeometric, and Legendre functions
-and elliptical integrals.
-<acronym><acronymword>GSL</acronymword></acronym> must be <w>version 1.4</w> or later.
-To list the <acronym><acronymword>GSL</acronymword></acronym> functions available with your <acronym><acronymword>NCO</acronymword></acronym>
-build, use <command>ncap2 -f | grep ^gsl</command>.
-</para>
-<noindent></noindent> <para>The function names used by <acronym><acronymword>ncap2</acronymword></acronym> mirror their
-<acronym><acronymword>GSL</acronymword></acronym> names.
-The <acronym><acronymword>NCO</acronymword></acronym> wrappers for <acronym><acronymword>GSL</acronymword></acronym> functions automatically
-call the error-handling version of the <acronym><acronymword>GSL</acronymword></acronym> function when
-available
-<footnote spaces=" \n"><para>These are the <acronym><acronymword>GSL</acronymword></acronym> standard function names postfixed with
-<code>_e</code>.
-<acronym><acronymword>NCO</acronymword></acronym> calls these functions automatically, without the
-<acronym><acronymword>NCO</acronymword></acronym> command having to specifically indicate the <code>_e</code>
-function suffix.
-</para></footnote>.
-This allows <acronym><acronymword>NCO</acronymword></acronym> to return a missing value when the
-<acronym><acronymword>GSL</acronymword></acronym> library encounters a domain error or a floating point
-exception.
-The slow-down due to calling the error-handling version of the
-<acronym><acronymword>GSL</acronymword></acronym> numerical functions was found to be negligible (please let
-us know if you find otherwise).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1078">gamma function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1079"><var>gsl_sf_gamma</var></indexterm></cindex>
-<noindent></noindent> <para>Consider the gamma function.&linebreak;
-<noindent></noindent> The <acronym><acronymword>GSL</acronymword></acronym> function prototype is &linebreak;
-<code>int gsl_sf_gamma_e(const double x, gsl_sf_result * result)</code>
-The <command>ncap2</command> script would be:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-lon_in[lon]={-1,0.1,0,2,0.3};
-lon_out=gsl_sf_gamma(lon_in);
-lon_out= _, 9.5135, 4.5908, 2.9915
-</verbatim>
-</example>
-
-<noindent></noindent> <para>The first value is set to <code>_FillValue</code> since the gamma
-function is undefined for negative integers.
-If the input variable has a missing value then this value is used.
-Otherwise, the default double fill value is used
-(defined in the netCDF header <file>netcdf.h</file> as
-<code>NC_FILL_DOUBLE = 9.969e+36</code>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1080">Bessel function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1081"><var>gsl_sf_bessel_Jn</var></indexterm></cindex>
-<noindent></noindent> <para>Consider a call to a Bessel function with <acronym><acronymword>GSL</acronymword></acronym>
-prototype&linebreak;
-<code>int gsl_sf_bessel_Jn_e(int n, double x, gsl_sf_result * result)</code>
-</para>
-<para>An <command>ncap2</command> script would be
-</para><example endspaces=" ">
-<pre xml:space="preserve">lon_out=gsl_sf_bessel_Jn(2,lon_in);
-lon_out=0.11490, 0.0012, 0.00498, 0.011165
-</pre></example>
-<para>This computes the Bessel function of order <var>n=2</var> for every value in
-<code>lon_in</code>.
-The Bessel order argument, an integer, can also be a non-scalar
-variable, i.e., an array.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-n_in[lon]={0,1,2,3};
-lon_out=gsl_sf_bessel_Jn(n_in,0.5);
-lon_out= 0.93846, 0.24226, 0.03060, 0.00256
-</verbatim>
-</example>
-
-<noindent></noindent> <para>Arguments to <acronym><acronymword>GSL</acronymword></acronym> wrapper functions in <command>ncap2</command>
-must conform to one another, i.e., they must share the same sub-set of
-dimensions.
-For example: <code>three_out=gsl_sf_bessel_Jn(n_in,three_dmn_var_dbl)</code>
-is valid because the variable <code>three_dmn_var_dbl</code> has a <var>lon</var>
-dimension, so <code>n_in</code> in can be broadcast to conform to
-<code>three_dmn_var_dbl</code>.
-However <code>time_out=gsl_sf_bessel_Jn(n_in,time)</code> is invalid.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1082">Elliptic integrals</indexterm></cindex>
-<para>Consider the elliptical integral with prototype
-<code>int gsl_sf_ellint_RD_e(double x, double y, double z, gsl_mode_t mode, gsl_sf_result * result)</code>
-</para><example endspaces=" ">
-<pre xml:space="preserve">three_out=gsl_sf_ellint_RD(0.5,time,three_dmn_var_dbl);
-</pre></example>
-
-<noindent></noindent> <para>The three arguments are all conformable so the above <command>ncap2</command> call is valid. The mode argument in the function prototype controls the convergence of the algorithm. It also appears in the Airy Function prototypes. It can be set by defining the environment variable <code>GSL_PREC_MODE</code>. If unset it defaults to the value <code>GSL_PREC_DOUBLE</code>. See the <acronym><acronymword>GSL</acronymword></acronym> manual for more details.
-</para><example endspaces=" ">
-<pre xml:space="preserve">export GSL_PREC_MODE=0 // GSL_PREC_DOUBLE
-export GSL_PREC_MODE=1 // GSL_PREC_SINGLE
-export GSL_PREC_MODE=2 // GSL_PREC_APPROX
-</pre></example>
-
-<noindent></noindent> <para>The <command>ncap2</command> wrappers to the array functions are
-slightly different.
-Consider the following <acronym><acronymword>GSL</acronymword></acronym> prototype &linebreak;
-<code>int gsl_sf_bessel_Jn_array(int nmin, int nmax, double x, double *result_array)</code>
-</para><example endspaces=" ">
-<pre xml:space="preserve">b1=lon.double();
-x=0.5;
-status=gsl_sf_bessel_Jn_array(1,4,x,&b1);
-print(status);
-b1=0.24226,0.0306,0.00256,0.00016;
-</pre></example>
-<noindent></noindent> <para>This calculates the Bessel function of <var>x</var>=0.5 for
-<var>n</var>=1 to 4.
-The first three arguments are scalar values.
-If a non-scalar variable is supplied as an argument then only the first
-value is used.
-The final argument is the variable where the results are stored (NB: the
-<code>&</code> indicates this is a call by reference).
-This final argument must be of type <code>double</code> and must be of least
-size <var>nmax-nmin+1</var>.
-If either of these conditions is not met then then the function
-returns an error message.
-The function/wrapper returns a status flag.
-Zero indicates success.
-</para>
-<noindent></noindent> <para>Consider another array function &linebreak;
-<code>int gsl_sf_legendre_Pl_array( int lmax, double x, double *result_array);</code>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1083">Legendre polynomial</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="17" mergedindex="cp">gsl_sf_legendre_Pl</indexterm></findex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">a1=time.double();
-x=0.3;
-status=gsl_sf_legendre_Pl_array(a1.size()-1, x,&a1);
-print(status);
-</pre></example>
-<noindent></noindent> <para>This call calculates <var>P_l</var>(0.3) for <var>l</var>=0..9.
-Note that <var>|x|<=1</var>, otherwise there will be a domain error.
-See the <acronym><acronymword>GSL</acronymword></acronym>
-documentation for more details.
-</para>
-<noindent></noindent> <para>The <acronym><acronymword>GSL</acronymword></acronym> functions implemented in <acronym><acronymword>NCO</acronymword></acronym> are
-listed in the table below.
-This table is correct for <acronym><acronymword>GSL</acronymword></acronym> version 1.10.
-To see what functions are available on your build run the command
-<command>ncap2 -f |grep ^gsl</command> .
-To see this table along with the <acronym><acronymword>GSL</acronymword></acronym> <w>C-function</w>
-prototypes look at the spreadsheet <strong>doc/nco_gsl.ods</strong>. &linebreak; &linebreak;
-</para>
-<multitable spaces=" " endspaces=" "><columnfractions line=" .35 .05 .60 "><columnfraction value=".35"></columnfraction><columnfraction value=".05"></columnfraction><columnfraction value=".60"></columnfraction></columnfractions>
-<tbody><row><entry command="item" spaces=" "><para><strong>GSL NAME</strong> </para></entry><entry command="tab" spaces=" "><para><strong>I</strong> </para></entry><entry command="tab" spaces=" "><para><strong>NCAP FUNCTION CALL</strong>
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Ai_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Ai(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Bi_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Bi(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Ai_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Ai_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Bi_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Bi_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Ai_deriv_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Ai_deriv(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Bi_deriv_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Bi_deriv(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Ai_deriv_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Ai_deriv_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_Bi_deriv_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_Bi_deriv_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_zero_Ai_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_zero_Ai(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_zero_Bi_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_zero_Bi(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_zero_Ai_deriv_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_zero_Ai_deriv(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_airy_zero_Bi_deriv_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_airy_zero_Bi_deriv(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_J0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_J0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_J1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_J1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Jn_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Jn(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Jn_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_Jn_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Y0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Y0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Y1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Y1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Yn_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Yn(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Yn_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Yn_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_I0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_I1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_In_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_In(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_In_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_In_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_I0_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I0_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_I1_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I1_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_In_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_In_scaled(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_In_scaled_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>staus=gsl_sf_bessel_In_scaled_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_K0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_K1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Kn_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Kn(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Kn_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_Kn_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_K0_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K0_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_K1_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K1_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Kn_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Kn_scaled(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Kn_scaled_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_Kn_scaled_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_j0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_J0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_j1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_J1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_j2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_j2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_jl_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_jl(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_jl_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_jl_array(int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_jl_steed_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_jl_steed_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_y0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Y0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_y1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Y1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_y2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_y2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_yl_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_yl(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_yl_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_yl_array(int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_i0_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I0_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_i1_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_I1_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_i2_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_i2_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_il_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_il_scaled(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_il_scaled_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_il_scaled_array(int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_k0_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K0_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_k1_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_K1_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_k2_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_k2_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_kl_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_kl_scaled(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_kl_scaled_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_bessel_kl_scaled_array(int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Jnu_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Jnu(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Ynu_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Ynu(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_sequence_Jnu_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_sequence_Jnu
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Inu_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Inu_scaled(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Inu_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Inu(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Knu_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Knu_scaled(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_Knu_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_Knu(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_lnKnu_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_lnKnu(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_zero_J0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_zero_J0(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_zero_J1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_zero_J1(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_bessel_zero_Jnu_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_bessel_zero_Jnu
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_clausen_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_clausen(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hydrogenicR_1_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hydrogenicR_1
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hydrogenicR_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hydrogenicR
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_wave_FG_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_wave_FG
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_wave_F_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_wave_F_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_wave_FG_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_wave_FG_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_wave_FGp_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_wave_FGp_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_wave_sphF_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_wave_sphF_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_CL_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_CL
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coulomb_CL_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coulomb_CL_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coupling_3j_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coupling_3j
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coupling_6j_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coupling_6j
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coupling_RacahW_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coupling_RacahW
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coupling_9j_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coupling_9j
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_coupling_6j_INCORRECT_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_coupling_6j_INCORRECT
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_dawson_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_dawson(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_3(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_4_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_4(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_5_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_5(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_debye_6_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_debye_6(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_dilog_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_dilog
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_dilog_xy_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_dilog_xy_e
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_dilog_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_dilog
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_spence_xy_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_spence_xy_e
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_multiply_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_multiply
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_multiply_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_multiply_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_Kcomp_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_Kcomp(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_Ecomp_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_Ecomp(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_Pcomp_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_Pcomp(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_Dcomp_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_Dcomp(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_F_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_F(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_E_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_E(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_P_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_P(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_D_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_D(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_RC_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_RC(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_RD_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_RD(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_RF_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_RF(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_ellint_RJ_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_ellint_RJ(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_elljac_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_elljac
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_erfc_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_erfc(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_log_erfc_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_log_erfc(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_erf_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_erf(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_erf_Z_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_erf_Z(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_erf_Q_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_erf_Q(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hazard_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hazard(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_mult_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_mult(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_mult_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_mult_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expm1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expm1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exprel_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exprel(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exprel_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exprel_2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exprel_n_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exprel_n(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_err_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_err(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_err_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_err_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_mult_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_mult_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_exp_mult_err_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_exp_mult_err_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_E1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_E1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_E2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_E2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_En_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_En(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_E1_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_E1_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_E2_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_E2_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_En_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_En_scaled(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_Ei_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_Ei(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_Ei_scaled_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_Ei_scaled(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_Shi_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_Shi(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_Chi_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_Chi(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_expint_3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_expint_3(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_Si_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_Si(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_Ci_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_Ci(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_atanint_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_atanint(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_m1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_m1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_int(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_mhalf_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_mhalf(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_half_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_half(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_3half_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_3half(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fermi_dirac_inc_0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fermi_dirac_inc_0(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lngamma_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lngamma(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lngamma_sgn_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lngamma_sgn
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gamma_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gamma(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gammastar_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gammastar(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gammainv_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gammainv(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lngamma_complex_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lngamma_complex
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_taylorcoeff_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_taylorcoeff(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_fact_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_fact(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_doublefact_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_doublefact(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnfact_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnfact(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lndoublefact_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lndoublefact(uint_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnchoose_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnchoose
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_choose_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_choose
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnpoch_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnpoch(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnpoch_sgn_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnpoch_sgn
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_poch_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_poch(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_pochrel_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_pochrel(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gamma_inc_Q_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gamma_inc_Q(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gamma_inc_P_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gamma_inc_P(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gamma_inc_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gamma_inc(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnbeta_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnbeta(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnbeta_sgn_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnbeta_sgn
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_beta_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_beta(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_beta_inc_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_beta_inc
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gegenpoly_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gegenpoly_1(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gegenpoly_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gegenpoly_2(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gegenpoly_3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gegenpoly_3(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gegenpoly_n_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gegenpoly_n
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_gegenpoly_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_gegenpoly_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_0F1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_0F1(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_1F1_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_1F1_int(int_expr,int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_1F1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_1F1(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_U_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_U_int(int_expr,int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_U_int_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_U_int_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_U_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_U(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_U_e10_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_U_e10
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_2F1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_2F1(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_2F1_conj_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_2F1_conj(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_2F1_renorm_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_2F1_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_2F1_conj_renorm_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_2F1_conj_renorm(dbl_expr,dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hyperg_2F0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hyperg_2F0(dbl_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_laguerre_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_laguerre_1(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_laguerre_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_laguerre_2(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_laguerre_3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_laguerre_3(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_laguerre_n_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_laguerre_n(int_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lambert_W0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lambert_W0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lambert_Wm1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lambert_Wm1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Pl_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Pl(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Pl_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_legendre_Pl_array(int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Pl_deriv_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Pl_deriv_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_P1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_P1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_P2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_P2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_P3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_P3(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Q0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Q0(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Q1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Q1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Ql_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Ql(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Plm_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Plm(int_expr,int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Plm_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_legendre_Plm_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_Plm_deriv_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_Plm_deriv_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_sphPlm_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_sphPlm(int_expr,int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_sphPlm_array </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>status=gsl_sf_legendre_sphPlm_array(int,int,double,&var_out)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_sphPlm_deriv_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_sphPlm_deriv_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_array_size </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_array_size
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_half_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_half(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_mhalf_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_mhalf(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_0(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_1(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_sph_reg_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_sph_reg(int_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_conicalP_cyl_reg_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_conicalP_cyl_reg(int_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_H3d_0_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_H3d_0(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_H3d_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_H3d_1(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_H3d_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_H3d(int_expr,dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_H3d_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_H3d_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_legendre_array_size </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_legendre_array_size
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_log_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_log(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_log_abs_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_log_abs(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_log_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_log
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_log_1plusx_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_log_1plusx(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_log_1plusx_mx_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_log_1plusx_mx(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_a_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_a_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_b_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_b_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_a </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_a
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_b </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_b
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_a_coeff </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_a_coeff
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_b_coeff </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_b_coeff
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_ce </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_ce
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_se </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_se
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_ce_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_ce_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_se_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_se_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_Mc </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_Mc
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_Ms </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_Ms
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_Mc_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_Mc_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_mathieu_Ms_array </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_mathieu_Ms_array
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_pow_int_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_pow_int
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi_int(int_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_1piy_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi_1piy(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_psi_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_psi
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_1_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi_1_int(int_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi_1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_psi_n_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_psi_n(int_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_synchrotron_1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_synchrotron_1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_synchrotron_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_synchrotron_2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_transport_2_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_transport_2(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_transport_3_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_transport_3(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_transport_4_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_transport_4(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_transport_5_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_transport_5(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_sin_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_sin
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_cos_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_cos
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hypot_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hypot
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_sin_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_sin
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_cos_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_cos
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_complex_logsin_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_complex_logsin
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_sinc_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_sinc
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lnsinh_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lnsinh
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_lncosh_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_lncosh
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_polar_to_rect </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_polar_to_rect
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_rect_to_polar </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_rect_to_polar
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_sin_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_sin_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_cos_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_cos_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_angle_restrict_symm_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_angle_restrict_symm
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_angle_restrict_pos_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_angle_restrict_pos
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_angle_restrict_symm_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_angle_restrict_symm_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_angle_restrict_pos_err_e </para></entry><entry command="tab" spaces=" "><para>N </para></entry><entry command="tab" spaces=" "><para>gsl_sf_angle_restrict_pos_err
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_zeta_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_zeta_int(int_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_zeta_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_zeta(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_zetam1_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_zetam1(dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_zetam1_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_zetam1_int(int_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_hzeta_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_hzeta(dbl_expr,dbl_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_eta_int_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_eta_int(int_expr)
-</para></entry></row><row><entry command="item" spaces=" "><para>gsl_sf_eta_e </para></entry><entry command="tab" spaces=" "><para>Y </para></entry><entry command="tab" spaces=" "><para>gsl_sf_eta(dbl_expr)
-</para></entry></row></tbody></multitable>
-
-<html endspaces=" ">
-<a name="gsl_int"></a> <!&textndash; http://nco.sf.net/nco.html#gsl_int &textndash;>
-</html>
-</subsection>
-<node name="GSL-interpolation" spaces=" "><nodename>GSL interpolation</nodename><nodenext spaces=" ">GSL least-squares fitting</nodenext><nodeprev spaces=" ">GSL special functions</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>GSL interpolation</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1084"><acronym><acronymword>GSL</acronymword></acronym></indexterm></cindex>
-<noindent></noindent> <para>As of version 3.9.9 (released July, 2009), <acronym><acronymword>NCO</acronymword></acronym> has wrappers to the <acronym><acronymword>GSL</acronymword></acronym> interpolation functions.
-</para>
-<noindent></noindent> <para>Given a set of data points (x1,y1)...(xn, yn) the <acronym><acronymword>GSL</acronymword></acronym> functions computes a continuous interpolating function <acronym><acronymword>Y(x)</acronymword></acronym> such that <acronym><acronymword>Y(xi) = yi</acronymword></acronym>. The interpolation is piecewise smooth, and its behavior at the end-points is determined by the type of interpolation used. For more information consult the <acronym><acronymword>GSL</acrony [...]
-</para>
-<noindent></noindent> <para>Interpolation with <command>ncap2</command> is a two stage process. In the first stage, a <acronym><acronymword>RAM</acronymword></acronym> variable is created from the chosen interpolating function and the data set. This <acronym><acronymword>RAM</acronymword></acronym> variable holds in memory a <acronym><acronymword>GSL</acronymword></acronym> interpolation object. In the second stage, points along the interpolating function are calculated. If you have a ve [...]
-</para>
-<noindent></noindent> <para>A simple example
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-x_in[$lon]={1.0,2.0,3.0,4.0};
-y_in[$lon]={1.1,1.2,1.5,1.8};
-
-// Ram variable is declared and defined here
-gsl_interp_cspline(&ram_sp,x_in,y_in);
-
-x_out[$lon_grd]={1.1,2.0,3.0,3.1,3.99};
-
-y_out=gsl_spline_eval(ram_sp,x_out);
-y2=gsl_spline_eval(ram_sp,1.3);
-y3=gsl_spline_eval(ram_sp,0.0);
-ram_delete(ram_sp);
-
-print(y_out); // 1.10472, 1.2, 1.4, 1.42658, 1.69680002
-print(y2); // 1.12454
-print(y3); // '_'
-</verbatim>
-</example>
-
-<noindent></noindent> <para>Note in the above example y3 is set to &textrsquo;missing value&textrsquo; because 0.0 isn&textrsquo;t within the input X range.
-</para>
-<para><strong><acronym><acronymword>GSL</acronymword></acronym> Interpolation Types</strong>&linebreak;
-<noindent></noindent> All the interpolation functions have been implemented. These are:&linebreak;
-gsl_interp_linear() &linebreak; gsl_interp_polynomial() &linebreak; gsl_interp_cspline()&linebreak;
-gsl_interp_cspline_periodic()&linebreak; gsl_interp_akima() &linebreak; gsl_interp_akima_periodic() &linebreak;
-</para>
-&linebreak; &linebreak;
-<para><strong> Evaluation of Interpolating Types </strong> &linebreak;
-<noindent></noindent> <strong>Implemented</strong> &linebreak;
-gsl_spline_eval() &linebreak;
-<noindent></noindent> <strong>Unimplemented</strong> &linebreak;
-gsl_spline_deriv()&linebreak;
-gsl_spline_deriv2()&linebreak;
-gsl_spline_integ()&linebreak;
-</para>
-<html endspaces=" ">
-<a name="ncap_lsqf"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_lsqf &textndash;>
-</html>
-</subsection>
-<node name="GSL-least_002dsquares-fitting" spaces=" "><nodename>GSL least-squares fitting</nodename><nodenext spaces=" ">GSL statistics</nodenext><nodeprev spaces=" ">GSL interpolation</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>GSL least-squares fitting </sectiontitle>
-<noindent></noindent> <para>Least Squares fitting is a method of calculating a straight line through a set of experimental data points in the XY plane. The data maybe weighted or unweighted. For more information please refer to the <acronym><acronymword>GSL</acronymword></acronym> manual.
-</para>
-<noindent></noindent> <para>These <acronym><acronymword>GSL</acronymword></acronym> functions fall into three categories:&linebreak;
-<strong>A)</strong> Fitting data to Y=c0+c1*X&linebreak;
-<strong>B)</strong> Fitting data (through the origin) Y=c1*X&linebreak;
-<strong>C)</strong> Multi-parameter fitting (not yet implemented)&linebreak;
-</para>
-<para><strong>Section A</strong> &linebreak; &linebreak;
-<code>status=<strong>gsl_fit_linear</strong> (data_x,stride_x,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&sumsq) </code>
-</para>
-<noindent></noindent> <para><strong>Input variables</strong>: data_x, stride_x, data_y, stride_y, n &linebreak;
-From the above variables an X and Y vector both of length &textrsquo;n&textrsquo; are derived.
-If data_x or data_y is less than type double then it is converted to type <code>double</code>.
-It is up to you to do bounds checking on the input data.
-For example if stride_x=3 and n=8 then the size of data_x must be at least 24
-</para>
-<noindent></noindent> <para><strong>Output variables</strong>: c0, c1, cov00, cov01, cov11,sumsq &linebreak;
-The &textrsquo;&&textrsquo; prefix indicates that these are call-by-reference variables.
-If any of the output variables don&textrsquo;t exist prior to the call then they are created on the fly as scalar variables of type <code>double</code>. If they already exist then their existing value is overwritten. If the function call is successful then <code>status=0</code>.
-</para>
-<para><code>status= <strong>gsl_fit_wlinear</strong>(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&co,&c1,&cov00,&cov01,&cov11,&chisq) </code>
-</para>
-<noindent></noindent> <para>Similar to the above call except it creates an additional weighting vector from the variables data_w, stride_w, n
-</para>
-
-<para><code> data_y_out=<strong>gsl_fit_linear_est</strong>(data_x,c0,c1,cov00,cov01,cov11) </code>
-</para>
-<noindent></noindent> <para>This function calculates y values along the line Y=c0+c1*X &linebreak; &linebreak;
-</para>
-
-
-<para><strong>Section B</strong> &linebreak; &linebreak;
-<code>status=<strong>gsl_fit_mul</strong>(data_x,stride_x,data_y,stride_y,n,&c1,&cov11,&sumsq) </code>
-</para>
-<noindent></noindent> <para><strong>Input variables</strong>: data_x, stride_x, data_y, stride_y, n &linebreak;
-From the above variables an X and Y vector both of length &textrsquo;n&textrsquo; are derived.
-If data_x or data_y is less than type <code>double</code> then it is converted to type <code>double</code>. &linebreak;
-</para>
-<noindent></noindent> <para><strong>Output variables</strong>: c1,cov11,sumsq &linebreak;
-</para>
-
-<para><code>status= <strong>gsl_fit_wmul</strong>(data_x,stride_x,data_w,stride_w,data_y,stride_y,n,&c1,&cov11,&sumsq) </code>
-</para>
-<noindent></noindent> <para>Similar to the above call except it creates an additional weighting vector from the variables data_w, stride_w, n
-</para>
-
-<para><code> data_y_out=<strong>gsl_fit_mul_est</strong>(data_x,c0,c1,cov11) </code>
-</para>
-<noindent></noindent> <para>This function calculates y values along the line Y=c1*X &linebreak; &linebreak;
-</para>
-<noindent></noindent> <para>The below example shows <strong>gsl_fit_linear()</strong> in action
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-defdim("d1",10);
-xin[d1]={1,2,3,4,5,6,7,8,9,10.0};
-yin[d1]={3.1,6.2,9.1,12.2,15.1,18.2,21.3,24.0,27.0,30.0};
-gsl_fit_linear(xin,1,yin,1,$d1.size,&c0,&c1,&cov00,&cov01,&cov11,&sumsq);
-print(c0); // 0.2
-print(c1); // 2.98545454545
-
-
-defdim("e1",4);
-xout[e1]={1.0,3.0,4.0,11};
-yout[e1]=0.0;
-
-yout=gsl_fit_linear_est(xout, c0,c1, cov00,cov01, cov11, sumsq);
-
-print(yout); // 3.18545454545 ,9.15636363636, ,12.1418181818 ,33.04
-</verbatim>
-</example>
-&linebreak; &linebreak;
-
-
-
-<html endspaces=" ">
-<a name="ncap_stat"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_stat &textndash;>
-</html>
-
-</subsection>
-<node name="GSL-statistics" spaces=" "><nodename>GSL statistics</nodename><nodenext spaces=" ">GSL random number generation</nodenext><nodeprev spaces=" ">GSL least-squares fitting</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>GSL statistics</sectiontitle>
-
-<noindent></noindent> <para>Wrappers for most of the <acronym><acronymword>GSL</acronymword></acronym> Statistical functions have been implemented. The <acronym><acronymword>GSL</acronymword></acronym> function names include a type specifier (except for type double functions). To obtain the equivalent <acronym><acronymword>NCO</acronymword></acronym> name simply remove the type specifier; then depending on the data type the appropriate <acronym><acronymword>GSL</acronymword></acronym> fu [...]
-</para>
-<noindent></noindent> <para><acronym><acronymword>GSL</acronymword></acronym> Functions
-</para><example endspaces=" ">
-<pre xml:space="preserve">short gsl_stats_max (short data[], size_t stride, size_t n);
-double gsl_stats_int_mean (int data[], size_t stride, size_t n);
-double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stride, size_t n, double mean);
-double gsl_stats_wmean (double w[], size_t wstride, double data[], size_t stride, size_t n);
-double gsl_stats_quantile_from_sorted_data (double sorted_data[], size_t stride, size_t n, double f) ;
-</pre></example>
-
-
-<noindent></noindent> <para>Equivalent ncap2 wrapper functions
-</para><example endspaces=" ">
-<pre xml:space="preserve">short gsl_stats_max (var_data, data_stride, n);
-double gsl_stats_mean (var_data, data_stride, n);
-double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_mean);
-double gsl_stats_wmean (var_weight, weight_stride, var_data, data_stride, n, var_mean);
-double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_stride, n, var_f) ;
-</pre></example>
-
-<noindent></noindent> <para><acronym><acronymword>GSL</acronymword></acronym> has no notion of missing values or dimensionality beyond one. If your data has missing values which you want ignored in the calculations then use the <command>ncap2</command> built in aggregate functions( <ref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></ref> ). The <acronym><acronymword>GSL</acronymword></acronym> functions operate on a vector of values created from the var [...]
-</para>
-<para>Some examples
-</para>
-<example endspaces=" ">
-<verbatim xml:space="preserve">
-a1[time]={1,2,3,4,5,6,7,8,9,10};
-
-a1_avg=gsl_stats_mean(a1,1,10);
-print(a1_avg); // 5.5
-
-a1_var=gsl_stats_variance(a1,4,3);
-print(a1_var); // 16.0
-
-// bounding error, vector attempts to access element a1(10)
-a1_sd=gsl_stats_sd(a1,5,3);
-</verbatim>
-</example>
-
-<noindent></noindent> <para>For functions with the signature
-<strong>func_nm(var_data,data_stride,n)</strong>,
-one may omit the second or third arguments.
-The default value for <var>stride</var> is <code>1</code>.
-The default value for <var>n</var> is <code>1+(data.size()-1)/stride</code>.
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">// Following statements are equvalent
-n2=gsl_stats_max(a1,1,10)
-n2=gsl_stats_max(a1,1);
-n2=gsl_stats_max(a1);
-
-// Following statements are equvalent
-n3=gsl_stats_median_from_sorted_data(a1,2,5);
-n3=gsl_stats_median_from_sorted_data(a1,2);
-
-// Following statements are NOT equvalent
-n4=gsl_stats_kurtosis(a1,3,2);
-n4=gsl_stats_kurtosis(a1,3); //default n=4
-</pre></example>
-
-<para>The following example illustrates some of the weighted functions.
-The data are randomly generated.
-In this case the value of the weight for each datum is either 0.0 or 1.0
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("r1",2000);
-data[r1]=1.0;
-
-// Fill with random numbers [0.0,10.0)
-data=10.0*gsl_rng_uniform(data);
-
-// Create a weighting variable
-weight=(data>4.0);
-
-wmean=gsl_stats_wmean(weight,1,data,1,$r1.size);
-print(wmean);
-
-wsd=gsl_stats_wsd(weight,1,data,1,$r1.size);
-print(wsd);
-
-// number of values in data that are greater than 4
-weight_size=weight.total();
-print(weight_size);
-
-// print min/max of data
-dmin=data.gsl_stats_min();
-dmax=data.gsl_stats_max();
-print(dmin);print(dmax);
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_rng"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_rng &textndash;>
-</html>
-
-</subsection>
-<node name="GSL-random-number-generation" spaces=" "><nodename>GSL random number generation</nodename><nodenext spaces=" ">Examples ncap2</nodenext><nodeprev spaces=" ">GSL statistics</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>GSL random number generation</sectiontitle>
-<para>The <acronym><acronymword>GSL</acronymword></acronym> library has a large number of random number generators. In addition there are a large set of functions for turning uniform random numbers into discrete or continuous probabilty distributions. The random number generator algorithms vary in terms of quality numbers output, speed of execution and maximum number output. For more information see the <acronym><acronymword>GSL</acronymword></acronym> documentation. The algorithm and se [...]
-</para>
-<noindent></noindent> <para><strong>Setup</strong> &linebreak;
-The number algorithm is set by the environment variable <code>GSL_RNG_TYPE</code>. If this variable isn&textrsquo;t set then the default rng algorithm is gsl_rng_19937. The seed is set with the environment variable <code>GSL_RNG_SEED</code>. The following wrapper functions in ncap2 provide information about the chosen algorithm. &linebreak;
-</para>
-<table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_min() </itemformat></item>
-</tableterm><tableitem><para>the minimum value returned by the rng algorithm.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_max()</itemformat></item>
-</tableterm><tableitem><para>the maximum value returned by the rng algorithm.
-</para></tableitem></tableentry></table>
-
-<noindent></noindent> <para><strong>Uniformly Distributed Random Numbers</strong>
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_get(var_in)</itemformat></item>
-</tableterm><tableitem><para>This function returns var_in with integers from the chosen rng algorithm. The min and max values depend uoon the chosen rng algorthm.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_uniform_int(var_in)</itemformat></item>
-</tableterm><tableitem><para>This function returns var_in with random integers from 0 to n-1. The value n must be less than or equal to the maximum value of the chosen rng algorithm.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_uniform(var_in)</itemformat></item>
-</tableterm><tableitem><para>This function returns var_in with double-precision numbers in the range [0.0,1). The range includes 0.0 and excludes 1.0.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gsl_rng_uniform_pos(var_in)</itemformat></item>
-</tableterm><tableitem><para>This function returns var_in with double-precision numbers in the range (0.0,1), excluding both 0.0 and 1.0.
-</para></tableitem></tableentry></table>
-
-<noindent></noindent> <para>Below are examples of <code>gsl_rng_get()</code> and <code>gsl_rng_uniform_int()</code> in action.
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">export GSL_RNG_TYPE=ranlux
-export GSL_RNG_SEED=10
-ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
-// 10 random numbers from the range 0 - 16777215
-// a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 11163902, 7730127, 15531355, 10387694 ;
-
-ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.nc foo.nc
-// 10 random numbers from the range 0 - 20
-a2 = 1, 1, 6, 9, 11, 13, 13, 15, 16, 19 ;
-
-</pre></example>
-
-<noindent></noindent> <para>The following example produces an <code>ncap2</code> runtime error. This is because the chose rng algorithm has a maximum value greater than <code> NC_MAX_INT=2147483647 </code>; the wrapper functions to <code>gsl_rng_get()</code> and <code>gsl_rng_uniform_int()</code> return variable of type <code>NC_INT</code>. Please be aware of this when using random number distribution functions functions from the <acronym><acronymword>GSL</acronymword></acronym> library [...]
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">export GSL_RNG_TYPE=mt19937
-ncap2 -v -O -s 'a1[time]=0;a2=gsl_rng_get(a1);' in.nc foo.nc
-</pre></example>
-
-<noindent></noindent> <para>To find the maximum value of the chosen rng algorithm use the following code snippet.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -v -O -s 'rng_max=gsl_rng_max();print(rng_max)' in.nc foo.nc
-</pre></example>
-
-<noindent></noindent> <para><strong>Random Number Distributions</strong> &linebreak;
-The <acronym><acronymword>GSL</acronymword></acronym> library has a rich set of random number disribution functions. The library also provides cumulative distribution functions and inverse cumulative distribution functions sometimes referred to a quantile functions. To see whats available on your build use the shell command <code>ncap2 -f|grep -e _ran -e _cdf</code>.
-</para>
-<noindent></noindent> <para>The following examples all return variables of type <code>NC_INT</code> &linebreak;
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("out",15);
-a1[$out]=0.5;
-a2=gsl_ran_binomial(a1,30).sort();
-//a2 = 10, 11, 12, 12, 13, 14, 14, 15, 15, 16, 16, 16, 16, 17, 22 ;
-a3=gsl_ran_geometric(a2).sort();
-//a2 = 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 3, 4, 5 ;
-a4=gsl_ran_pascal(a2,50);
-//a5 = 37, 40, 40, 42, 43, 45, 46, 49, 52, 58, 60, 62, 62, 65, 67 ;
-</pre></example>
-
-<noindent></noindent> <para>The following all return variables of type <code>NC_DOUBLE</code>;
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("b1",1000);
-b1[$b1]=0.8;
-b2=gsl_ran_exponential(b1);
-b2_avg=b2.avg();
-print(b2_avg);
-// b2_avg = 0.756047976787
-
-b3=gsl_ran_gaussian(b1);
-b3_avg=b3.avg();
-b3_rms=b3.rms();
-print(b3_avg);
-// b3_avg = -0.00903446534258;
-print(b3_rms);
-// b3_rms = 0.81162979889;
-
-b4[$b1]=10.0;
-b5[$b1]=20.0;
-b6=gsl_ran_flat(b4,b5);
-b6_avg=b6.avg();
-print(b6_avg);
-// b6_avg=15.0588129413
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncap_emp"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_emp &textndash;>
-</html>
-</subsection>
-<node name="Examples-ncap2" spaces=" "><nodename>Examples ncap2</nodename><nodenext spaces=" ">Intrinsic mathematical methods</nodenext><nodeprev spaces=" ">GSL random number generation</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Examples ncap2</sectiontitle>
-
-<para>See the <file>ncap.in</file> and <file>ncap2.in</file> scripts released with <acronym><acronymword>NCO</acronymword></acronym>
-for more complete demonstrations of <command>ncap2</command> functionality
-(script available on-line at <url><urefurl>http://nco.sf.net/ncap2.in</urefurl></url>).
-</para>
-<para>Define new attribute <var>new</var> for existing variable <var>one</var>
-as twice the existing attribute <var>double_att</var> of variable
-<var>att_var</var>:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncap2 -s 'one at new=2*att_var at double_att' in.nc out.nc
-</verbatim>
-</example>
-
-<para>Average variables of mixed types (result is of type <code>double</code>):
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'average=(var_float+var_double+var_int)/3' in.nc out.nc
-</pre></example>
-
-<para>Multiple commands may be given to <command>ncap2</command> in three ways.
-First, the commands may be placed in a script which is executed, e.g.,
-<file>tst.nco</file>.
-Second, the commands may be individually specified with multiple
-<samp>-s</samp> arguments to the same <command>ncap2</command> invocation.
-Third, the commands may be chained into a single <samp>-s</samp>
-argument to <command>ncap2</command>.
-Assuming the file <file>tst.nco</file> contains the commands
-<code>a=3;b=4;c=sqrt(a^2+b^2);</code>, then the following <command>ncap2</command>
-invocations produce identical results:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -v -S tst.nco in.nc out.nc
-ncap2 -v -s 'a=3' -s 'b=4' -s 'c=sqrt(a^2+b^2)' in.nc out.nc
-ncap2 -v -s 'a=3;b=4;c=sqrt(a^2+b^2)' in.nc out.nc
-</pre></example>
-<para>The second and third examples show that <command>ncap2</command> does not require
-that a trailing semi-colon <samp>;</samp> be placed at the end of a <samp>-s</samp>
-argument, although a trailing semi-colon <samp>;</samp> is always allowed.
-However, semi-colons are required to separate individual assignment
-statements chained together as a single <samp>-s</samp> argument.
-</para>
-<html endspaces=" ">
-<a name="xmp_grw"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_grw &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1085">growing dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1086">dimensions, growing</indexterm></cindex>
-<para><command>ncap2</command> may be used to &textldquo;grow&textrdquo; dimensions, i.e., to increase
-dimension sizes without altering existing data.
-Say <file>in.nc</file> has <code>ORO(lat,lon)</code> and the user wishes a new
-file with <code>new_ORO(new_lat,new_lon)</code> that contains zeros in the
-undefined portions of the new grid.
-</para><example endspaces=" ">
-<pre xml:space="preserve">defdim("new_lat",$lat.size+1); // Define new dimension sizes
-defdim("new_lon",$lon.size+1);
-new_ORO[$new_lat,$new_lon]=0.0f; // Initialize to zero
-new_ORO(0:$lat.size-1,0:$lon.size-1)=ORO; // Fill valid data
-</pre></example>
-<para>The commands to define new coordinate variables <code>new_lat</code>
-and <code>new_lon</code> in the output file follow a similar pattern.
-One would might store these commands in a script <file>grow.nco</file>
-and then execute the script with
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -v -S grow.nco in.nc out.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="flg"></a> <!&textndash; http://nco.sf.net/nco.html#flg &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1087">flags</indexterm></cindex>
-<para>Imagine you wish to create a binary flag based on the value of
-an array.
-The flag should have <w>value 1.0</w> where the array <w>exceeds 1.0</w>,
-and <w>value 0.0</w> elsewhere.
-This example creates the binary flag <code>ORO_flg</code> in <file>out.nc</file>
-from the continuous array named <code>ORO</code> in <file>in.nc</file>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'ORO_flg=(ORO > 1.0)' in.nc out.nc
-</pre></example>
-<para>Suppose your task is to change all values of <code>ORO</code> which
-<w>equal 2.0</w> to the new <w>value 3.0</w>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'ORO_msk=(ORO==2.0);ORO=ORO_msk*3.0+!ORO_msk*ORO' in.nc out.nc
-</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1088">mask</indexterm></cindex>
-<para>This creates and uses <code>ORO_msk</code> to mask the subsequent arithmetic
-operation.
-Values of <code>ORO</code> are only changed where <code>ORO_msk</code> is true,
-i.e., where <code>ORO</code> <w>equals 2.0</w> &linebreak;
-Using the <code>where</code> statement the above code simplifies to :
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'where(ORO==2.0) ORO=3.0;' in.nc foo.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="cvr"></a> <!&textndash; http://nco.sf.net/nco.html#cvr &textndash;>
-</html>
-<para>This example uses <command>ncap2</command> to compute the covariance of two
-variables.
-Let the variables <var>u</var> and <var>v</var> be the horizontal
-wind components.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1089">covariance</indexterm></cindex>
-<!-- c fxm 20030423: texi2html 1.64 has problems with this legal syntax but makeinfo -html does not -->
-The <dfn>covariance</dfn> of <var>u</var> and <var>v</var> is defined
-as the time mean product of the deviations of <var>u</var> and
-<var>v</var> from their respective time means.
-Symbolically, the covariance
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$[\wndznl^{\prime} \wndmrd^{\prime}] =
-[\wndznl\wndmrd]-[\wndznl][\wndmrd]$ where $[\xxx]$ denotes the
-time-average of~$\xxx$,
-$[\xxx] \equiv {1 \over \tau} \int_{\tm=0}^{\tm=\tau} \xxx(\tm) \,\dfr\tm$
-and $\xxx^{\prime}$
-<clear name="flg" line=" flg "></clear>
-</tex>
-<math>[<var>u'v'</var>] =
-[<var>uv</var>]-[<var>u</var>][<var>v</var>]</math>
-where <math>[<var>x</var>]</math> denotes the time-average of
-<math><var>x</var></math> and <math><var>x'</var></math>
-<clear name="flg" line=" flg"></clear>
-denotes the deviation from the time-mean.
-The covariance tells us how much of the correlation of two signals
-arises from the signal fluctuations versus the mean signals.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1090">eddy covariance</indexterm></cindex>
-Sometimes this is called the <dfn>eddy covariance</dfn>.
-We will store the covariance in the variable <code>uprmvprm</code>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -O -a time -v u,v in.nc foo.nc # Compute time mean of u,v
-ncrename -O -v u,uavg -v v,vavg foo.nc # Rename to avoid conflict
-ncks -A -v uavg,vavg foo.nc in.nc # Place time means with originals
-ncap2 -O -s 'uprmvprm=u*v-uavg*vavg' in.nc in.nc # Covariance
-ncra -O -v uprmvprm in.nc foo.nc # Time-mean covariance
-</pre></example>
-<para>The mathematically inclined will note that the same covariance would be
-obtained by replacing the step involving <command>ncap2</command> with
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -O -s 'uprmvprm=(u-uavg)*(v-vavg)' foo.nc foo.nc # Covariance
-</pre></example>
-
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 3.1.8 (December, 2006), <command>ncap2</command>
-can compute averages, and thus covariances, by itself:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'uavg=u.avg($time);vavg=v.avg($time);uprmvprm=u*v-uavg*vavg' \
- -s 'uprmvrpmavg=uprmvprm.avg($time)' in.nc foo.nc
-</pre></example>
-<para>We have not seen a simpler method to script and execute powerful
-arithmetic than <command>ncap2</command>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1091">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1092">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1093">quotes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1094">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1095">regular expressions</indexterm></cindex>
-<para><command>ncap2</command> utilizes many meta-characters
-(e.g., <samp>$</samp>, <samp>?</samp>, <samp>;</samp>, <samp>()</samp>, <samp>[]</samp>)
-that can confuse the command-line shell if not quoted properly.
-The issues are the same as those which arise in utilizing extended
-regular expressions to subset variables (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>).
-The example above will fail with no quotes and with double quotes.
-This is because shell globbing tries to <dfn>interpolate</dfn> the value of
-<code>$time</code> from the shell environment unless it is quoted:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncap2 -s 'uavg=u.avg($time)' in.nc foo.nc # Correct (recommended)
-ncap2 -s uavg=u.avg('$time') in.nc foo.nc # Correct (and dangerous)
-ncap2 -s uavg=u.avg($time) in.nc foo.nc # Fails ($time = '')
-ncap2 -s "uavg=u.avg($time)" in.nc foo.nc # Fails ($time = '')
-</pre></example>
-<para>Without the single quotes, the shell replaces <code>$time</code> with an
-empty string.
-The command <command>ncap2</command> receives from the shell is
-<code>uavg=u.avg()</code>.
-This causes <command>ncap2</command> to average over all dimensions rather than
-just the <var>time</var> dimension, and unintended consequence.
-</para>
-<para>We recommend using single quotes to protect <command>ncap2</command>
-command-line scripts from the shell, even when such protection is not
-strictly necessary.
-Expert users may violate this rule to exploit the ability to use shell
-variables in <command>ncap2</command> command-line scripts
-(<pxref label="CCSM-Example"><xrefnodename>CCSM Example</xrefnodename></pxref>).
-In such cases it may be necessary to use the shell backslash character
-<samp>\</samp> to protect the <command>ncap2</command> meta-character.
-</para>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1096">appending data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1097">time-averaging</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="18" mergedindex="cp">ncks</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="19" mergedindex="cp">ncwa</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="20" mergedindex="cp">ncra</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1098">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1099"><samp>-b</samp></indexterm></cindex>
-<para>A dimension of size one is said to be <emph>degenerate</emph>.
-Whether a degenerate record dimension is desirable or not
-depends on the application.
-Often a degenerate <var>time</var> dimension is useful, e.g., for
-concatentating, but it may cause problems with arithmetic.
-Such is the case in the above example, where the first step employs
-<command>ncwa</command> rather than <command>ncra</command> for the time-averaging.
-Of course the numerical results are the same with both operators.
-The difference is that, unless <samp>-b</samp> is specified, <command>ncwa</command>
-writes no <var>time</var> dimension to the output file, while <command>ncra</command>
-defaults to keeping <var>time</var> as a degenerate (<w>size 1</w>) dimension.
-Appending <code>u</code> and <code>v</code> to the output file would cause
-<command>ncks</command> to try to expand the degenerate time axis of <code>uavg</code>
-and <code>vavg</code> to the size of the non-degenerate <var>time</var> dimension
-in the input file.
-Thus the append (<command>ncks -A</command>) command would be undefined (and
-should fail) in this case.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1100"><code>-C</code></indexterm></cindex>
-Equally important is the <samp>-C</samp> argument
-(<pxref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></pxref>) to <command>ncwa</command> to prevent
-any scalar <var>time</var> variable from being written to the output file.
-Knowing when to use <command>ncwa -a time</command> rather than the default
-<command>ncra</command> for time-averaging takes, well, time.
-</para>
-<html endspaces=" ">
-<a name="mth"></a> <!&textndash; http://nco.sf.net/nco.html#mth &textndash;>
-</html>
-</subsection>
-<node name="Intrinsic-mathematical-methods" spaces=" "><nodename>Intrinsic mathematical methods</nodename><nodenext spaces=" " trailingspaces=" ">Operator precedence and associativity</nodenext><nodeprev spaces=" ">Examples ncap2</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Intrinsic mathematical methods</sectiontitle>
-<para><command>ncap2</command> supports the standard mathematical functions supplied with
-most operating systems.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1101">addition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1102">subtraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1103">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1104">division</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1105">exponentiation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1106">power</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1107">modulus</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1108"><code>+</code> (addition)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1109"><code>-</code> (subtraction)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1110"><code>*</code> (multiplication)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1111"><code>/</code> (division)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1112"><code>^</code> (power)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1113"><code>%</code> (modulus)</indexterm></cindex>
-Standard calculator notation is used for addition <kbd>+</kbd>, subtraction
-<kbd>-</kbd>, multiplication <kbd>*</kbd>, division <kbd>/</kbd>, exponentiation
-<kbd>^</kbd>, and modulus <kbd>%</kbd>.
-The available elementary mathematical functions are:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1114"><var>abs</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1115"><var>acosh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1116"><var>acos</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1117"><var>asinh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1118"><var>asin</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1119"><var>atanh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1120"><var>atan</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1121"><var>ceil</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1122"><var>cosh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1123"><var>cos</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1124"><var>erfc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1125"><var>erf</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1126"><var>exp</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1127"><var>floor</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1128"><var>gamma</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1129"><var>ln</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1130"><var>log10</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1131"><var>log</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1132"><var>nearbyint</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1133"><var>pow</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1134"><var>rint</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1135"><var>round</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1136"><var>sinh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1137"><var>sin</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1138"><var>sqrt</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1139"><var>tanh</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1140"><var>tan</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1141"><var>trunc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1142">mathematical functions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1143">nearest integer function (inexact)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1144">nearest integer function (exact)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1145">rounding functions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1146">truncation function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1147">absolute value</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1148">arccosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1149">arcsine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1150">arctangent function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1151">ceiling function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1152">complementary error function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1153">cosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1154">error function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1155">exponentiation function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1156">floor function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1157">gamma function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1158">hyperbolic arccosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1159">hyperbolic arcsine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1160">hyperbolic arctangent function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1161">hyperbolic cosine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1162">hyperbolic sine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1163">hyperbolic tangent</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1164">logarithm, base 10</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1165">logarithm, natural</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1166">power function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1167">sine function</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1168">square root function</indexterm></cindex>
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">abs(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Absolute value</dfn>
-<tex endspaces=" ">
-Absolute value of $x$, $|x|$.
-</tex>
-Absolute value of <var>x</var>.
-Example:
-<tex endspaces=" ">
-abs$(-1) = 1$
-</tex>
-<math>abs(-1) = 1</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">acos(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Arc-cosine</dfn>
-Arc-cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-acos$(1.0) = 0.0$
-</tex>
-<math>acos(1.0) = 0.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">acosh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic arc-cosine</dfn>
-Hyperbolic arc-cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-acosh$(1.0) = 0.0$
-</tex>
-<math>acosh(1.0) = 0.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">asin(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Arc-sine</dfn>
-Arc-sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-asin$(1.0) = 1.57079632679489661922$
-</tex>
-<math>asin(1.0) = 1.57079632679489661922</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">asinh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic arc-sine</dfn>
-Hyperbolic arc-sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-asinh$(1.0) = 0.88137358702$
-</tex>
-<math>asinh(1.0) = 0.88137358702</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">atan(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Arc-tangent</dfn>
-Arc-tangent of <var>x</var> where <var>x</var> is specified in radians between
-<tex endspaces=" ">
-$-\pi/2$ and $\pi/2$.
-</tex>
-<math>-pi/2</math> and <math>pi/2</math>.
-Example:
-<tex endspaces=" ">
-atan$(1.0) = 0.78539816339744830961$
-</tex>
-<math>atan(1.0) = 0.78539816339744830961</math>
-</para>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">atan2(y,x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Arc-tangent2</dfn>
-Arc-tangent of <var>y/x</var>
-<math>:Example atan2(1,3) = 0.321689857</math>
-</para>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">atanh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic arc-tangent</dfn>
-Hyperbolic arc-tangent of <var>x</var> where <var>x</var> is specified in radians between
-<tex endspaces=" ">
-$-\pi/2$ and $\pi/2$.
-</tex>
-<math>-pi/2</math> and <math>pi/2</math>.
-Example:
-<tex endspaces=" ">
-atanh$(3.14159265358979323844) = 1.0$
-</tex>
-<math>atanh(3.14159265358979323844) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ceil(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Ceil</dfn>
-Ceiling of <var>x</var>. Smallest integral value not less than argument.
-Example:
-<tex endspaces=" ">
-ceil$(0.1) = 1.0$
-</tex>
-<math>ceil(0.1) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">cos(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Cosine</dfn>
-Cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-cos$(0.0) = 1.0$
-</tex>
-<math>cos(0.0) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">cosh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic cosine</dfn>
-Hyperbolic cosine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-cosh$(0.0) = 1.0$
-</tex>
-<math>cosh(0.0) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">erf(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Error function</dfn>
-Error function of <var>x</var> where <var>x</var> is specified between
-<tex endspaces=" ">
-$-1$ and $1$.
-</tex>
-<math>-1</math> and <math>1</math>.
-Example:
-<tex endspaces=" ">
-erf$(1.0) = 0.842701$
-</tex>
-<math>erf(1.0) = 0.842701</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">erfc(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Complementary error function</dfn>
-Complementary error function of <var>x</var> where <var>x</var> is specified between
-<tex endspaces=" ">
-$-1$ and $1$.
-</tex>
-<math>-1</math> and <math>1</math>.
-Example:
-<tex endspaces=" ">
-erfc$(1.0) = 0.15729920705$
-</tex>
-<math>erfc(1.0) = 0.15729920705</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">exp(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Exponential</dfn>
-Exponential of <var>x</var>,
-<tex endspaces=" ">
-$e^{x}$.
-</tex>
-<math>e^x</math>.
-Example:
-<tex endspaces=" ">
-exp$(1.0) = 2.71828182845904523536$
-</tex>
-<math>exp(1.0) = 2.71828182845904523536</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">floor(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Floor</dfn>
-Floor of <var>x</var>. Largest integral value not greater than argument.
-Example:
-<tex endspaces=" ">
-floor$(1.9) = 1$
-</tex>
-<math>floor(1.9) = 1</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gamma(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Gamma function</dfn>
-Gamma function of <var>x</var>,
-<tex endspaces=" ">
-$\Gamma(x)$.
-</tex>
-<math>Gamma(x)</math>.
-The well-known and loved continuous factorial function.
-Example:
-<tex endspaces=" ">
-gamma$(0.5) = \sqrt{\pi}$
-</tex>
-<math>gamma(0.5) = sqrt(pi)</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">gamma_inc_P(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Incomplete Gamma function</dfn>
-Incomplete Gamma function of parameter <var>a</var> and variable <var>x</var>,
-<tex endspaces=" ">
-$P(a,x)$.
-</tex>
-<math>gamma_inc_P(a,x)</math>.
-One of the four incomplete gamma functions.
-Example:
-<tex endspaces=" ">
-gamma\_inc\_P$(1,1) = 1-\me^{-1}$
-</tex>
-<math>gamma_inc_P(1,1) = 1-1/e</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ln(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Natural Logarithm</dfn>
-Natural logarithm of <var>x</var>,
-<tex endspaces=" ">
-$\ln(x)$.
-</tex>
-<math>ln(x)</math>.
-Example:
-<tex endspaces=" ">
-ln$(2.71828182845904523536) = 1.0$
-</tex>
-<math>ln(2.71828182845904523536) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">log(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Natural Logarithm</dfn>
-Exact synonym for <code>ln(x)</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">log10(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Base 10 Logarithm</dfn>
-<w>Base 10</w> logarithm of <var>x</var>,
-<tex endspaces=" ">
-$\log_{10}(x)$.
-</tex>
-<math>log10(x)</math>.
-Example:
-<tex endspaces=" ">
-log$(10.0) = 1.0$
-</tex>
-<math>log(10.0) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">nearbyint(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Round inexactly</dfn>
-Nearest integer to <var>x</var> is returned in floating point format.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1169">inexact conversion</indexterm></cindex>
-No exceptions are raised for <dfn>inexact conversions</dfn>.
-Example:
-<tex endspaces=" ">
-nearbyint$(0.1) = 0.0$
-</tex>
-<math>nearbyint(0.1) = 0.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">pow(x,y)</itemformat></item>
-</tableterm><tableitem><para><dfn>Power</dfn>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1170">promotion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1171">automatic type conversion</indexterm></cindex>
-Value of <var>x</var> is raised to the power of <var>y</var>.
-Exceptions are raised for <dfn>domain errors</dfn>.
-Due to type-limitations in the <w>C language</w> <code>pow</code> function,
-integer arguments are promoted (<pxref label="Type-Conversion"><xrefnodename>Type Conversion</xrefnodename></pxref>) to type
-<code>NC_FLOAT</code> before evaluation.
-Example:
-<tex endspaces=" ">
-pow$(2,3) = 8$
-</tex>
-<math>pow(2,3) = 8</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">rint(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Round exactly</dfn>
-Nearest integer to <var>x</var> is returned in floating point format.
-Exceptions are raised for <dfn>inexact conversions</dfn>.
-Example:
-<tex endspaces=" ">
-rint$(0.1) = 0$
-</tex>
-<math>rint(0.1) = 0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">round(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Round</dfn>
-Nearest integer to <var>x</var> is returned in floating point format.
-Round halfway cases away from zero, regardless of current <acronym><acronymword>IEEE</acronymword></acronym>
-rounding direction.
-Example:
-<tex endspaces=" ">
-round$(0.5) = 1.0$
-</tex>
-<math>round(0.5) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sin(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Sine</dfn>
-Sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-sin$(1.57079632679489661922) = 1.0$
-</tex>
-<math>sin(1.57079632679489661922) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sinh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic sine</dfn>
-Hyperbolic sine of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-sinh$(1.0) = 1.1752$
-</tex>
-<math>sinh(1.0) = 1.1752</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sqrt(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Square Root</dfn>
-Square Root of <var>x</var>,
-<tex endspaces=" ">
-$\sqrt{x}$.
-</tex>
-<math>sqrt(x)</math>.
-Example:
-<tex endspaces=" ">
-sqrt$(4.0) = 2.0$
-</tex>
-<math>sqrt(4.0) = 2.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">tan(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Tangent</dfn>
-Tangent of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-tan$(0.78539816339744830961) = 1.0$
-</tex>
-<math>tan(0.78539816339744830961) = 1.0</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">tanh(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Hyperbolic tangent</dfn>
-Hyperbolic tangent of <var>x</var> where <var>x</var> is specified in radians.
-Example:
-<tex endspaces=" ">
-tanh$(1.0) = 0.761594155956$
-</tex>
-<math>tanh(1.0) = 0.761594155956</math>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">trunc(x)</itemformat></item>
-</tableterm><tableitem><para><dfn>Truncate</dfn>
-Nearest integer to <var>x</var> is returned in floating point format.
-Round halfway cases toward zero, regardless of current <acronym><acronymword>IEEE</acronymword></acronym>
-rounding direction.
-Example:
-<tex endspaces=" ">
-trunc$(0.5) = 0.0$
-</tex>
-<math>trunc(0.5) = 0.0</math>
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>The complete list of mathematical functions supported is
-platform-specific.
-Functions mandated by <w>ANSI C</w> are <emph>guaranteed</emph> to be present
-and are indicated with an asterisk
-<!-- c fxm No they're not, not yet -->
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1172"><code>ANSI C</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1173"><code>float</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1174">precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1175">quadruple-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1176">single-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1177">double-precision</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1178"><code>long double</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1179"><code>NC_DOUBLE</code></indexterm></cindex>
-<footnote spaces="\n"><para><w>ANSI C</w> compilers are guaranteed to support double-precision versions
-of these functions.
-These functions normally operate on netCDF variables of type <code>NC_DOUBLE</code>
-without having to perform intrinsic conversions.
-For example, <acronym><acronymword>ANSI</acronymword></acronym> compilers provide <code>sin</code> for the sine of C-type
-<code>double</code> variables.
-The <acronym><acronymword>ANSI</acronymword></acronym> standard does not require, but many compilers provide,
-an extended set of mathematical functions that apply to single
-(<code>float</code>) and quadruple (<code>long double</code>) precision variables.
-Using these functions (e.g., <code>sinf</code> for <code>float</code>,
-<code>sinl</code> for <code>long double</code>), when available, is (presumably)
-more efficient than casting variables to type <code>double</code>,
-performing the operation, and then re-casting.
-<acronym><acronymword>NCO</acronymword></acronym> uses the faster intrinsic functions when they are
-available, and uses the casting method when they are not.
-</para></footnote>.
-and are indicated with an asterisk.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1180"><code>-f</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1181"><code>--prn_fnc_tbl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1182"><code>--fnc_tbl</code></indexterm></cindex>
-Use the <samp>-f</samp> (or <samp>fnc_tbl</samp> or <samp>prn_fnc_tbl</samp>) switch
-to print a complete list of functions supported on your platform.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1183">Linux</indexterm></cindex>
-<footnote><para>Linux supports more of these intrinsic functions than
-other OSs.</para></footnote>
-</para>
-<noindent></noindent>
-<html endspaces=" ">
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-</html>
-
-<!-- c Begin HMB documentation -->
-
-<html endspaces=" ">
-<a name="ncap_opts"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_opts &textndash;>
-</html>
-</subsection>
-<node name="Operator-precedence-and-associativity" spaces=" "><nodename trailingspaces=" ">Operator precedence and associativity</nodename><nodenext spaces=" ">ID Quoting</nodenext><nodeprev spaces=" ">Intrinsic mathematical methods</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>Operator precedence and associativity</sectiontitle>
-<para>This page lists the <command>ncap2</command> operators in order of precedence (highest to lowest). Their associativity indicates in what order operators of equal precedence in an expression are applied.
-</para>
-<multitable spaces=" " endspaces=" "><columnfractions line=" .18 .62 .20"><columnfraction value=".18"></columnfraction><columnfraction value=".62"></columnfraction><columnfraction value=".20"></columnfraction></columnfractions>
-<thead><row><entry command="headitem" spaces=" "><para>Operator </para></entry><entry command="tab" spaces=" "><para>Description </para></entry><entry command="tab" spaces=" "><para>Associativity
-</para></entry></row></thead><tbody><row><entry command="item" spaces=" "><para><code>++ --</code> </para></entry><entry command="tab" spaces=" "><para>Postfix Increment/Decrement </para></entry><entry command="tab" spaces=" "><para>Right to Left
-</para></entry></row><row><entry command="item" spaces=" "><para><code>()</code> </para></entry><entry command="tab" spaces=" "><para>Parentheses (function call)
-</para></entry></row><row><entry command="item" spaces=" "><para><code>.</code> </para></entry><entry command="tab" spaces=" "><para>Method call
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>++ --</code> </para></entry><entry command="tab" spaces=" "><para>Prefix Increment/Decrement </para></entry><entry command="tab" spaces=" "><para>Right to Left
-</para></entry></row><row><entry command="item" spaces=" "><para><code>+ -</code> </para></entry><entry command="tab" spaces=" "><para>Unary Plus/Minus
-</para></entry></row><row><entry command="item" spaces=" "><para><code>!</code> </para></entry><entry command="tab" spaces=" "><para>Logical Not
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>^</code> </para></entry><entry command="tab" spaces=" "><para>Power of Operator </para></entry><entry command="tab" spaces=" "><para>Right to Left
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>* / %</code> </para></entry><entry command="tab" spaces=" "><para>Multiply/Divide/Modulus </para></entry><entry command="tab" spaces=" "><para>Left To Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>+ -</code> </para></entry><entry command="tab" spaces=" "><para>Addition/Subtraction </para></entry><entry command="tab" spaces=" "><para>Left To Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>>> <<</code> </para></entry><entry command="tab" spaces=" "><para>Fortran style array clipping </para></entry><entry command="tab" spaces=" "><para>Left to Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>< <=</code> </para></entry><entry command="tab" spaces=" "><para>Less than/Less than or equal to </para></entry><entry command="tab" spaces=" "><para>Left to Right
-</para></entry></row><row><entry command="item" spaces=" "><para><code>> >=</code> </para></entry><entry command="tab" spaces=" "><para>Greater than/Greater than or equal to
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>== !=</code> </para></entry><entry command="tab" spaces=" "><para>Equal to/Not equal to </para></entry><entry command="tab" spaces=" "><para>Left to Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>&&</code> </para></entry><entry command="tab" spaces=" "><para>Logical AND </para></entry><entry command="tab" spaces=" "><para>Left to Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>||</code> </para></entry><entry command="tab" spaces=" "><para>Logical OR </para></entry><entry command="tab" spaces=" "><para>Left to Right
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>?:</code> </para></entry><entry command="tab" spaces=" "><para>Ternary Operator </para></entry><entry command="tab" spaces=" "><para>Right to Left
-</para></entry></row><row><entry command="item">
-</entry></row><row><entry command="item" spaces=" "><para><code>=</code> </para></entry><entry command="tab" spaces=" "><para>Assignment </para></entry><entry command="tab" spaces=" "><para>Right to Left
-</para></entry></row><row><entry command="item" spaces=" "><para><code>+= -=</code> </para></entry><entry command="tab" spaces=" "><para>Addition/subtraction assignment
-</para></entry></row><row><entry command="item" spaces=" "><para><code>*= /=</code> </para></entry><entry command="tab" spaces=" "><para>Multiplication/division assignment
-</para></entry></row></tbody></multitable>
-
-<html endspaces=" ">
-<a name="ncap_nmc"></a> <!&textndash; http://nco.sf.net/nco.html#ncap_nmc &textndash;>
-</html>
-</subsection>
-<node name="ID-Quoting" spaces=" "><nodename>ID Quoting</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" " trailingspaces=" ">Operator precedence and associativity</nodeprev><nodeup spaces=" ">ncap2 netCDF Arithmetic Processor</nodeup></node>
-<subsection spaces=" "><sectiontitle>ID Quoting</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1184">ID Quoting</indexterm></cindex>
-<para>In this section when I refer to a name I mean a variable name, attribute name or a dimension name
-The allowed characters in a valid netCDF name vary from release to release. (See end section). If you want to use metacharacters in a name or use a method name as a variable name then the name has to be quoted wherever it occurs.
-</para>
-<noindent></noindent> <para>The default <acronym><acronymword>NCO</acronymword></acronym> name is specified by the regular expressions:
-</para>
-<example endspaces=" ">
-<pre xml:space="preserve">DGT: ('0'..'9');
-LPH: ( 'a'..'z' | 'A'..'Z' | '_' );
-name: (LPH)(LPH|DGT)+
-</pre></example>
-
-<noindent></noindent> <para>The first character of a valid name must be alphabetic or the underscore. Any subsequent characters must be alphanumeric or underscore. ( e.g., a1,_23, hell_is_666 )
-</para>
-<noindent></noindent> <para>The valid characters in a quoted name are specified by the regular expressions:
-</para><example endspaces=" ">
-<pre xml:space="preserve">LPHDGT: ( 'a'..'z' | 'A'..'Z' | '_' | '0'..'9');
-name: (LPHDGT|'-'|'+'|'.'|'('|')'|':' )+ ;
-</pre></example>
-
-<noindent></noindent> <para>Quote a variable:&linebreak;
-&textrsquo;avg&textrsquo; , &textrsquo;10_+10&textrsquo;,&textrsquo;set_miss&textrsquo; &textrsquo;+-90field&textrsquo; , &textrsquo;&textndash;test&textrsquo;=10.0d&linebreak; &linebreak;
-Quote a attribute: &linebreak;
-&textrsquo;three&arobase;10&textrsquo;, &textrsquo;set_mss&arobase;+10&textrsquo;, &textrsquo;666&arobase;hell&textrsquo;, &textrsquo;t1&arobase;+units&textrsquo;="kelvin" &linebreak; &linebreak;
-Quote a dimension: &linebreak;
-&textrsquo;$10&textrsquo;, &textrsquo;$t1&textndash;&textrsquo;, &textrsquo;$&textndash;odd&textrsquo;, c1[&textrsquo;$10&textrsquo;,&textrsquo;$t1&textndash;&textrsquo;]=23.0d &linebreak;
-</para>
-<sp value="1" line=" 1"></sp>
-<para>The following comments are from the netCDF library definitions and
-detail the naming conventions for each release.
-<noindent></noindent> netcdf-3.5.1 &linebreak;
-netcdf-3.6.0-p1 &linebreak;
-netcdf-3.6.1 &linebreak;
-netcdf-3.6.2 &linebreak;
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-/*
- * ( [a-zA-Z]|[0-9]|'_'|'-'|'+'|'.'|'|':'|'@'|'('|')' )+
- * Verify that name string is valid CDL syntax, i.e., all characters are
- * alphanumeric, '-', '_', '+', or '.'.
- * Also permit ':', '@', '(', or ')' in names for chemists currently making
- * use of these characters, but don't document until ncgen and ncdump can
- * also handle these characters in names.
- */
-</verbatim>
-</example>
-
-<noindent></noindent> <para>netcdf-3.6.3&linebreak;
-netcdf-4.0 Final 2008/08/28&linebreak;
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-/*
- * Verify that a name string is valid syntax. The allowed name
- * syntax (in RE form) is:
- *
- * ([a-zA-Z_]|{UTF8})([^\x00-\x1F\x7F/]|{UTF8})*
- *
- * where UTF8 represents a multibyte UTF-8 encoding. Also, no
- * trailing spaces are permitted in names. This definition
- * must be consistent with the one in ncgen.l. We do not allow '/'
- * because HDF5 does not permit slashes in names as slash is used as a
- * group separator. If UTF-8 is supported, then a multi-byte UTF-8
- * character can occur anywhere within an identifier. We later
- * normalize UTF-8 strings to NFC to facilitate matching and queries.
- */
-</verbatim>
-</example>
-<!-- c End HMB documentation -->
-
-<page></page>
-<html endspaces=" ">
-<a name="ncatted"></a> <!&textndash; http://nco.sf.net/nco.html#ncatted &textndash;>
-</html>
-</subsection>
-</section>
-<node name="ncatted-netCDF-Attribute-Editor" spaces=" "><nodename>ncatted netCDF Attribute Editor</nodename><nodenext spaces=" ">ncbo netCDF Binary Operator</nodenext><nodeprev spaces=" ">ncap2 netCDF Arithmetic Processor</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncatted</command> netCDF Attribute Editor</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1185">attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1186">attribute names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1187">editing attributes</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="21" mergedindex="cp">ncatted</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted [-a <var>att_dsc</var>] [-a &dots;] [-D <var>dbg</var>] [-h] [--hdr_pad <var>nbr</var>]
-[-l <var>path</var>] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1188"><command>ncattget</command></indexterm></cindex>
-<para><command>ncatted</command> edits attributes in a netCDF file.
-If you are editing attributes then you are spending too much time in the
-world of metadata, and <command>ncatted</command> was written to get you back out as
-quickly and painlessly as possible.
-<command>ncatted</command> can <dfn>append</dfn>, <dfn>create</dfn>, <dfn>delete</dfn>,
-<dfn>modify</dfn>, and <dfn>overwrite</dfn> attributes (all explained below).
-<command>ncatted</command> allows each editing operation to be applied
-to every variable in a file.
-This saves time when changing attribute conventions throughout a file.
-<command>ncatted</command> is for <emph>writing</emph> attributes.
-To <emph>read</emph> attribute values in plain text, use <command>ncks -m -M</command>,
-or define something like <command>ncattget</command> as a shell command
-(<pxref label="Filters-for-ncks"><xrefnodename>Filters for <command>ncks</command></xrefnodename></pxref>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1189"><code>history</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1190"><code>-h</code></indexterm></cindex>
-<para>Because repeated use of <command>ncatted</command> can considerably increase the size
-of the <code>history</code> global attribute (<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>), the
-<samp>-h</samp> switch is provided to override automatically appending the
-command to the <code>history</code> global attribute in the <var>output-file</var>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1191">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1192">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1193">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1194">execution time</indexterm></cindex>
-<para>According to the <cite>netCDF User Guide</cite>, altering metadata in
-netCDF files does not incur the penalty of recopying the entire file
-when the new metadata occupies less space than the old metadata.
-Thus <command>ncatted</command> may run much faster (at least on netCDF3 files)
-if judicious use of header padding (<pxref label="Metadata-Optimization"><xrefnodename>Metadata Optimization</xrefnodename></pxref>) was
-made when producing the <var>input-file</var>.
-Similarly, using the <samp>--hdr_pad</samp> option with <command>ncatted</command>
-helps ensure that future metadata changes to <var>output-file</var> occur
-as swiftly as possible.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1195">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1196">data, missing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1197"><code>_FillValue</code></indexterm></cindex>
-<para>When <command>ncatted</command> is used to change the <code>_FillValue</code> attribute,
-it changes the associated missing data self-consistently.
-If the internal floating point representation of a missing value,
-e.g., 1.0e36, differs between two machines then netCDF files produced
-on those machines will have incompatible missing values.
-This allows <command>ncatted</command> to change the missing values in files from
-different machines to a single value so that the files may then be
-concatenated, e.g., by <command>ncrcat</command>, without losing information.
-<xref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></xref>, for more information.
-</para>
-<para>To master <command>ncatted</command> one must understand the meaning of the
-structure that describes the attribute modification, <var>att_dsc</var>
-specified by the required option <samp>-a</samp> or <samp>--attribute</samp>.
-This option is repeatable and may be used multiple time in a single
-<command>ncatted</command> invocation to increase the efficiency of altering
-multiple attributes.
-Each <var>att_dsc</var> contains five elements.
-This makes using <command>ncatted</command> somewhat complicated, though
-powerful.
-The <var>att_dsc</var> fields are in the following order:&linebreak;
-</para>
-<para><var>att_dsc</var> = <var>att_nm</var>, <var>var_nm</var>, <var>mode</var>, <var>att_type</var>,
-<var>att_val</var>&linebreak;
-</para>
-<table commandarg="var" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="var">att_nm</itemformat></item>
-</tableterm><tableitem><para>Attribute name.
-Example: <code>units</code>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">var_nm</itemformat></item>
-</tableterm><tableitem><para>Variable name.
-Example: <code>pressure</code>, <code>'^H2O'</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1198">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1199">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1200">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1201">wildcards</indexterm></cindex>
-Regular expressions (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>) are accepted and will
-select any matching variable (<emph>not</emph> attribute) names.
-The names <code>global</code> and <code>group</code> have special meaning.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">mode</itemformat></item>
-</tableterm><tableitem><para>Edit mode abbreviation.
-Example: <code>a</code>.
-See below for complete listing of valid values of <var>mode</var>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">att_type</itemformat></item>
-</tableterm><tableitem><para>Attribute type abbreviation.
-Example: <code>c</code>.
-See below for complete listing of valid values of <var>att_type</var>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="var">att_val</itemformat></item>
-</tableterm><tableitem><para>Attribute value.
-Example: <code>pascal</code>.
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>There should be no empty space between these five consecutive
-arguments.
-The description of these arguments follows in their order of
-appearance.
-</para>
-<para>The value of <var>att_nm</var> is the name of the attribute to edit.
-This meaning of this should be clear to all <command>ncatted</command> users.
-Recall, as mentioned above, that <var>var_nm</var> (but not <var>att_nm</var>) may
-be specified as a regular expression.
-If <var>att_nm</var> is omitted (i.e., left blank) and <dfn>Delete</dfn> mode is
-selected, then all attributes associated with the specified variable
-will be deleted.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1202">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1203">attributes, global</indexterm></cindex>
-<para>The value of <var>var_nm</var> is the name of the variable containing the
-attribute (named <var>att_nm</var>) that you want to edit.
-There are three very important and useful exceptions to this rule.
-The value of <var>var_nm</var> can also be used to direct <command>ncatted</command>
-to edit global attributes, or to repeat the editing operation for every
-group or variable in a file.
-<w>A value</w> of <var>var_nm</var> of <code>global</code> indicates that <var>att_nm</var>
-refers to a global (i.e., root-level) attribute, rather than to a
-particular variable&textrsquo;s attribute.
-This is the method <command>ncatted</command> supports for editing global
-attributes.
-<w>A value</w> of <var>var_nm</var> of <code>group</code> indicates that <var>att_nm</var>
-refers to all groups, rather than to a particular variable&textrsquo;s or group&textrsquo;s
-attribute.
-The operation will proceed to edit group metadata for every group.
-Finally, if <var>var_nm</var> is left blank, then <command>ncatted</command>
-attempts to perform the editing operation on every variable in the file.
-This option may be convenient to use if you decide to change the
-conventions you use for describing the data.
-</para>
-<html endspaces=" ">
-<a name="mode"></a> <!&textndash; http://nco.sf.net/nco.html#mode &textndash;>
-<a name="att_mode"></a> <!&textndash; http://nco.sf.net/nco.html#att_mode &textndash;>
-</html>
-<para>The value of <var>mode</var> is a single character abbreviation (<code>a</code>,
-<code>c</code>, <code>d</code>, <code>m</code>, or <code>o</code>) standing for one of
-five editing modes:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1204">attributes, appending</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1205">attributes, creating</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1206">attributes, deleting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1207">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1208">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1209">attributes, overwriting</indexterm></cindex>
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">a </itemformat></item>
-</tableterm><tableitem><para><dfn>Append</dfn>.
-Append value <var>att_val</var> to current <var>var_nm</var> attribute
-<var>att_nm</var> value <var>att_val</var>, if any.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">c</itemformat></item>
-</tableterm><tableitem><para><dfn>Create</dfn>.
-Create variable <var>var_nm</var> attribute <var>att_nm</var> with <var>att_val</var>
-if <var>att_nm</var> does not yet exist.
-If <var>var_nm</var> already has an attribute <var>att_nm</var>, there is no
-effect, so the existing attribute is preserved without change.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">d</itemformat></item>
-</tableterm><tableitem><para><dfn>Delete</dfn>.
-Delete current <var>var_nm</var> attribute <var>att_nm</var>.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-If <var>att_nm</var> is omitted (left blank), then all attributes associated
-with the specified variable are automatically deleted.
-When <dfn>Delete</dfn> mode is selected, the <var>att_type</var> and <var>att_val</var>
-arguments are superfluous and may be left blank.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">m</itemformat></item>
-</tableterm><tableitem><para><dfn>Modify</dfn>.
-Change value of current <var>var_nm</var> attribute <var>att_nm</var> to value
-<var>att_val</var>.
-If <var>var_nm</var> does not have an attribute <var>att_nm</var>, there is no
-effect.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">o</itemformat></item>
-</tableterm><tableitem><para><dfn>Overwrite</dfn>.
-Write attribute <var>att_nm</var> with value <var>att_val</var> to variable
-<var>var_nm</var>, overwriting existing attribute <var>att_nm</var>, if any.
-This is the default mode.
-</para></tableitem></tableentry></table>
-
-<html endspaces=" ">
-<a name="att_typ"></a> <!&textndash; http://nco.sf.net/nco.html#att_typ &textndash;>
-</html>
-<para>The value of <var>att_type</var> is a single character abbreviation
-(<code>f</code>, <code>d</code>, <code>l</code>, <code>i</code>, <code>s</code>, <code>c</code>,
-<code>b</code>, <code>u</code>) or a short string standing for one of the twelve
-primitive netCDF data types:&linebreak;
-</para><table commandarg="code" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="code">f</itemformat></item>
-</tableterm><tableitem><para><dfn>Float</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_FLOAT</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">d</itemformat></item>
-</tableterm><tableitem><para><dfn>Double</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_DOUBLE</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">i, l</itemformat></item>
-</tableterm><tableitem><para><dfn>Integer</dfn> or <dfn>Long</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_INT</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">s</itemformat></item>
-</tableterm><tableitem><para><dfn>Short</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_SHORT</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">c</itemformat></item>
-</tableterm><tableitem><para><dfn>Char</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_CHAR</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">b</itemformat></item>
-</tableterm><tableitem><para><dfn>Byte</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_BYTE</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ub</itemformat></item>
-</tableterm><tableitem><para><dfn>Unsigned Byte</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UBYTE</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">us</itemformat></item>
-</tableterm><tableitem><para><dfn>Unsigned Short</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_USHORT</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">u, ui, ul</itemformat></item>
-</tableterm><tableitem><para><dfn>Unsigned Int</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UINT</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ll, int64</itemformat></item>
-</tableterm><tableitem><para><dfn>Int64</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_INT64</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">ull, uint64</itemformat></item>
-</tableterm><tableitem><para><dfn>Uint64</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_UINT64</code>.
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="code">sng, string</itemformat></item>
-</tableterm><tableitem><para><dfn>String</dfn>.
-Value(s) specified in <var>att_val</var> will be stored as netCDF intrinsic
-type <code>NC_STRING</code>.
-Note that <command>ncatted</command> handles type <code>NC_STRING</code> attributes
-correctly beginning with version 4.3.3 released in July, 2013.
-Earlier versions fail when asked to handle <code>NC_STRING</code> attributes.
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>In <dfn>Delete</dfn> mode the specification of <var>att_type</var> is optional
-(and is ignored if supplied).
-</para>
-<para>The value of <var>att_val</var> is what you want to change attribute
-<var>att_nm</var> to contain.
-The specification of <var>att_val</var> is optional in <dfn>Delete</dfn> (and is
-ignored) mode.
-Attribute values for all types besides <code>NC_CHAR</code> must have an
-attribute length of at least one.
-Thus <var>att_val</var> may be a single value or one-dimensional array of
-elements of type <code>att_type</code>.
-If the <var>att_val</var> is not set or is set to empty space,
-and the <var>att_type</var> is <code>NC_CHAR</code>, e.g., <code>-a units,T,o,c,""</code>
-or <code>-a units,T,o,c,</code>, then the corresponding attribute is set to
-have zero length.
-When specifying an array of values, it is safest to enclose
-<var>att_val</var> in single or double quotes, e.g.,
-<code>-a levels,T,o,s,"1,2,3,4"</code> or
-<code>-a levels,T,o,s,'1,2,3,4'</code>.
-The quotes are strictly unnecessary around <var>att_val</var> except
-when <var>att_val</var> contains characters which would confuse the calling
-shell, such as spaces, commas, and wildcard characters.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1210">Perl</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1211"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> processing of <code>NC_CHAR</code> attributes is a bit like Perl in
-that it attempts to do what you want by default (but this sometimes
-causes unexpected results if you want unusual data storage).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1212"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1213"><code>\n</code> (<acronym><acronymword>ASCII</acronymword></acronym> LF, linefeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1214">characters, special</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1215"><code>\t</code> (<acronym><acronymword>ASCII</acronymword></acronym> HT, horizontal tab)</indexterm></cindex>
-If the <var>att_type</var> is <code>NC_CHAR</code> then the argument is interpreted as a
-string and it may contain C-language escape sequences, e.g., <code>\n</code>,
-which <acronym><acronymword>NCO</acronymword></acronym> will interpret before writing anything to disk.
-<acronym><acronymword>NCO</acronymword></acronym> translates valid escape sequences and stores the
-appropriate <acronym><acronymword>ASCII</acronymword></acronym> code instead.
-Since two byte escape sequences, e.g., <code>\n</code>, represent one-byte
-<acronym><acronymword>ASCII</acronymword></acronym> codes, e.g., <acronym><acronymword>ASCII</acronymword></acronym> 10 (decimal), the stored
-string attribute is one byte shorter than the input string length for
-each embedded escape sequence.
-The most frequently used C-language escape sequences are <code>\n</code> (for
-linefeed) and <code>\t</code> (for horizontal tab).
-These sequences in particular allow convenient editing of formatted text
-attributes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1216"><code>\a</code> (<acronym><acronymword>ASCII</acronymword></acronym> BEL, bell)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1217"><code>\b</code> (<acronym><acronymword>ASCII</acronymword></acronym> BS, backspace)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1218"><code>\f</code> (<acronym><acronymword>ASCII</acronymword></acronym> FF, formfeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1219"><code>\r</code> (<acronym><acronymword>ASCII</acronymword></acronym> CR, carriage return)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1220"><code>\v</code> (<acronym><acronymword>ASCII</acronymword></acronym> VT, vertical tab)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1221"><code>\\</code> (<acronym><acronymword>ASCII</acronymword></acronym> \, backslash)</indexterm></cindex>
-The other valid <acronym><acronymword>ASCII</acronymword></acronym> codes are <code>\a</code>, <code>\b</code>, <code>\f</code>,
-<code>\r</code>, <code>\v</code>, and <code>\\</code>.
-<xref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></xref>, for more examples of string formatting
-(with the <command>ncks</command> <samp>-s</samp> option) with special characters.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1222"><code>\'</code> (protected end quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1223"><code>\"</code> (protected double quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1224"><code>\?</code> (protected question mark)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1225"><code>\\</code> (protected backslash)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1226"><code>'</code> (end quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1227"><code>"</code> (double quote)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1228"><code>?</code> (question mark)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1229"><code>\</code> (backslash)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1230">special characters</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1231"><acronym><acronymword>ASCII</acronymword></acronym></indexterm></cindex>
-<para>Analogous to <code>printf</code>, other special characters are also allowed by
-<command>ncatted</command> if they are &textldquo;protected&textrdquo; by a backslash.
-The characters <code>"</code>, <code>'</code>, <code>?</code>, and <code>\</code> may be
-input to the shell as <code>\"</code>, <code>\'</code>, <code>\?</code>, and <code>\\</code>.
-<acronym><acronymword>NCO</acronymword></acronym> simply strips away the leading backslash from these
-characters before editing the attribute.
-No other characters require protection by a backslash.
-Backslashes which precede any other character (e.g., <code>3</code>, <code>m</code>,
-<code>$</code>, <code>|</code>, <code>&</code>, <code>&arobase;</code>, <code>%</code>, <code>{</code>, and
-<code>}</code>) will not be filtered and will be included in the attribute.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1232">strings</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1233">NUL-termination</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1234">NUL</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1235">C language</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1236"><code>0</code> (NUL)</indexterm></cindex>
-<para>Note that the NUL character <code>\0</code> which terminates <w>C language</w>
-strings is assumed and need not be explicitly specified.
-<!-- comment If @code{\0} is input, it will not be translated (because it would -->
-<!-- comment terminate the string in an additional location). -->
-<!-- comment 20101007 Before today, \0 was not translated to NUL -->
-<!-- comment 20101007 As of today, \0 is translated to NUL -->
-If <code>\0</code> is input, it is translated to the NUL character.
-However, this will make the subsequent portion of the string, if any,
-invisible to <w>C standard</w> library string functions.
-And that may cause unintended consequences.
-Because of these context-sensitive rules, one must use <command>ncatted</command>
-with care in order to store data, rather than text strings, in an
-attribute of type <code>NC_CHAR</code>.
-</para>
-<para>Note that <command>ncatted</command> interprets character attributes
-(i.e., attributes of type <code>NC_CHAR</code>) as strings.
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncatted"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncatted &textndash;>
-</html>
-EXAMPLES
-</para>
-<para>Append the string <code>Data version 2.0.\n</code> to the global attribute
-<code>history</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a history,global,a,c,'Data version 2.0\n' in.nc
-</pre></example>
-<para>Note the use of embedded <w>C language</w> <code>printf()</code>-style escape
-sequences.
-</para>
-<para>Change the value of the <code>long_name</code> attribute for variable <code>T</code>
-from whatever it currently is to &textldquo;temperature&textrdquo;:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a long_name,T,o,c,temperature in.nc
-</pre></example>
-
-<html endspaces=" ">
-<a name="NaN"></a> <!&textndash; http://nco.sf.net/nco.html#NaN &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1237">NaN</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1238"><acronym><acronymword>IEEE</acronymword></acronym> NaN</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1239">Not-a-Number</indexterm></cindex>
-<para><acronym><acronymword>NCO</acronymword></acronym> arithmetic operators may not work as expected on
-<acronym><acronymword>IEEE</acronymword></acronym> NaN (short for Not-a-Number) and NaN-like numbers such as
-positive infinity and negative infinity
-<footnote><para>Arithmetic comparisons to NaN and NaN-like numbers always
-return False, contrary to the behavior of all other numbers.
-This is difficult to inuit, yet is the behavior defined for NaN by
-<w><acronym><acronymword>IEEE</acronymword></acronym> 754</w>.
-Using NaN for the missing value in datasets is legal.
-We strongly discourage it.</para></footnote>.
-One way to work-around this problem is to change <acronym><acronymword>IEEE</acronymword></acronym> NaNs to
-normal missing values.
-As of <acronym><acronymword>NCO</acronymword></acronym> 4.1.0 (March, 2012), <command>ncatted</command> works with
-NaNs.
-First set the missing value (i.e., the value of the <code>_FillValue</code>
-attribute) for the variable(s) in question to the <acronym><acronymword>IEEE</acronymword></acronym> NaN value.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a _FillValue,,o,f,NaN in.nc
-</pre></example>
-<para>Then change the missing value from the <acronym><acronymword>IEEE</acronymword></acronym> NaN value to a
-normal <acronym><acronymword>IEEE</acronymword></acronym> number, like 1.0e36 (or to whatever the original
-missing value was).
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a _FillValue,,m,f,1.0e36 in.nc
-</pre></example>
-
-<para>Delete all existing <code>units</code> attributes:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a units,,d,, in.nc
-</pre></example>
-<noindent></noindent>
-<para>The value of <var>var_nm</var> was left blank in order to select all
-variables in the file.
-The values of <var>att_type</var> and <var>att_val</var> were left blank because
-they are superfluous in <dfn>Delete</dfn> mode.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1240"><code>global</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1241">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1242">attributes, global</indexterm></cindex>
-<para>Delete all attributes associated with the <code>tpt</code> variable, and
-delete all global attributes
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a ,tpt,d,, -a ,global,d,, in.nc
-</pre></example>
-<noindent></noindent>
-<para>The value of <var>att_nm</var> was left blank in order to select all
-attributes associated with the variable.
-To delete all global attributes, simply replace <code>tpt</code> with
-<code>global</code> in the above.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1243"><code>units</code></indexterm></cindex>
-<para>Modify all existing <code>units</code> attributes to <code>meter second-1</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a units,,m,c,'meter second-1' in.nc
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1244"><code>units</code></indexterm></cindex>
-<para>Add a <code>units</code> attribute of <code>kilogram kilogram-1</code> to all
-variables whose first three characters are <samp>H2O</samp>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a units,'^H2O',c,c,'kilogram kilogram-1' in.nc
-</pre></example>
-
-<para>Overwrite the <code>quanta</code> attribute of variable
-<code>energy</code> to an array of four integers.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a quanta,energy,o,s,'010,101,111,121' in.nc
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1245">extended regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1246">regular expressions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1247">pattern matching</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1248">wildcards</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> 3.9.6 (January, 2009), <command>ncatted</command> accepts
-<dfn>extended regular expressions</dfn> as arguments for variable names,
-though not for attribute names.
-Create <code>isotope</code> attributes for all variables containing <samp>H2O</samp>
-in their names.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -a isotope,'^H2O*',c,s,'18' in.nc
-</pre></example>
-<para>See <ref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></ref> for more details.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1249">groups</indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> 4.3.8 (November, 2013), <command>ncatted</command>
-accepts full and partial group paths in names of attributes,
-variables, dimensions, and groups.
-<!-- c ncks -m -v lon ~/in_grp.nc -->
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Overwrite units attribute of specific 'lon' variable
-ncatted -O -a units,/g1/lon,o,c,'degrees_west' in_grp.nc
-# Overwrite units attribute of all 'lon' variables
-ncatted -O -a units,lon,o,c,'degrees_west' in_grp.nc
-# Delete units attribute of all 'lon' variables
-ncatted -O -a units,lon,d,, in_grp.nc
-# Overwrite units attribute with new type for specific 'lon' variable
-ncatted -O -a units,/g1/lon,o,sng,'degrees_west' in_grp.nc
-# Add new_att attribute to all variables
-ncatted -O -a new_att,,c,sng,'new variable attribute' in_grp.nc
-# Add new_grp_att group attribute to all groups
-ncatted -O -a new_grp_att,group,c,sng,'new group attribute' in_grp.nc
-# Add new_grp_att group attribute to single group
-ncatted -O -a g1_grp_att,g1,c,sng,'new group attribute' in_grp.nc
-# Add new_glb_att global attribute to root group
-ncatted -O -a new_glb_att,global,c,sng,'new global attribute' in_grp.nc
-</pre></example>
-
-<para>Demonstrate input of C-language escape sequences (e.g., <code>\n</code>) and
-other special characters (e.g., <code>\"</code>)
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncatted -h -a special,global,o,c,
-'\nDouble quote: \"\nTwo consecutive double quotes: \"\"\n
-Single quote: Beyond my shell abilities!\nBackslash: \\\n
-Two consecutive backslashes: \\\\\nQuestion mark: \?\n' in.nc
-</pre></example>
-<para>Note that the entire attribute is protected from the shell by single
-quotes.
-These outer single quotes are necessary for interactive use, but may be
-omitted in batch scripts.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncbo"></a> <!&textndash; http://nco.sf.net/nco.html#ncbo &textndash;>
-<a name="ncdiff"></a> <!&textndash; http://nco.sf.net/nco.html#ncdiff &textndash;>
-<a name="ncadd"></a> <!&textndash; http://nco.sf.net/nco.html#ncadd &textndash;>
-<a name="ncsub"></a> <!&textndash; http://nco.sf.net/nco.html#ncsub &textndash;>
-<a name="ncsubtract"></a> <!&textndash; http://nco.sf.net/nco.html#ncsubtract &textndash;>
-<a name="ncmult"></a> <!&textndash; http://nco.sf.net/nco.html#ncmult &textndash;>
-<a name="ncmultiply"></a> <!&textndash; http://nco.sf.net/nco.html#ncmultiply &textndash;>
-<a name="ncdivide"></a> <!&textndash; http://nco.sf.net/nco.html#ncdivide &textndash;>
-</html>
-</section>
-<node name="ncbo-netCDF-Binary-Operator" spaces=" "><nodename>ncbo netCDF Binary Operator</nodename><nodenext spaces=" ">nces netCDF Ensemble Statistics</nodenext><nodeprev spaces=" ">ncatted netCDF Attribute Editor</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncbo</command> netCDF Binary Operator</sectiontitle>
-<findex index="fn" spaces=" "><indexterm index="fn" number="22" mergedindex="cp">ncbo</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="23" mergedindex="cp">ncdiff</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="24" mergedindex="cp">ncadd</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="25" mergedindex="cp">ncsub</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="26" mergedindex="cp">ncsubtract</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="27" mergedindex="cp">ncmult</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="28" mergedindex="cp">ncmultiply</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="29" mergedindex="cp">ncdivide</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1250">binary operations</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1251">addition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1252">subtraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1253">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1254">adding data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1255">subtracting data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1256">multiplying data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1257">dividing data</indexterm></cindex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncbo [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--no_tmp_fl]
-[-O] [-o <var>file_3</var>] [-p <var>path</var>] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x] [-y <var>op_typ</var>]
-<var>file_1</var> <var>file_2</var> [<var>file_3</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncbo</command> performs binary operations on variables in <var>file_1</var>
-and the corresponding variables (those with the same name) in
-<var>file_2</var> and stores the results in <var>file_3</var>.
-The binary operation operates on the entire files (modulo any excluded
-variables).
-<xref label="Missing-Values"><xrefnodename>Missing Values</xrefnodename></xref>, for treatment of missing values.
-One of the four standard arithmetic binary operations currently
-supported must be selected with the <samp>-y <var>op_typ</var></samp> switch (or
-long options <samp>--op_typ</samp> or <samp>--operation</samp>).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1258"><code>add</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1259"><code>subtract</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1260"><code>multiply</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1261"><code>divide</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1262"><code>+</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1263"><code>-</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1264"><code>*</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1265"><code>/</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1266"><code>-y <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1267"><code>--operation <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1268"><code>--op_typ <var>op_typ</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1269">alternate invocations</indexterm></cindex>
-The valid binary operations for <command>ncbo</command>, their definitions,
-corresponding values of the <var>op_typ</var> key, and alternate invocations
-are:
-</para><table commandarg="dfn" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Addition</itemformat></item>
-</tableterm><tableitem><!-- c Internal operation code: @{nco_op_add}@* -->
-<para>Definition: <var>file_3</var> = <var>file_1</var> + <var>file_2</var>&linebreak;
-Alternate invocation: <command>ncadd</command>&linebreak;
-<var>op_typ</var> key values: <samp>add</samp>, <samp>+</samp>, <samp>addition</samp>&linebreak;
-Examples: <samp>ncbo --op_typ=add 1.nc 2.nc 3.nc</samp>, <samp>ncadd 1.nc 2.nc 3.nc</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Subtraction</itemformat></item>
-</tableterm><tableitem><para>Definition: <var>file_3</var> = <var>file_1</var> - <var>file_2</var>&linebreak;
-Alternate invocations: <command>ncdiff</command>, <command>ncsub</command>, <command>ncsubtract</command>&linebreak;
-<var>op_typ</var> key values: <samp>sbt</samp>, <samp>-</samp>, <samp>dff</samp>, <samp>diff</samp>, <samp>sub</samp>, <samp>subtract</samp>, <samp>subtraction</samp>&linebreak;
-Examples: <samp>ncbo --op_typ=- 1.nc 2.nc 3.nc</samp>, <samp>ncdiff 1.nc 2.nc 3.nc</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Multiplication</itemformat></item>
-</tableterm><tableitem><para>Definition: <var>file_3</var> = <var>file_1</var> * <var>file_2</var>&linebreak;
-Alternate invocations: <command>ncmult</command>, <command>ncmultiply</command>&linebreak;
-<var>op_typ</var> key values: <samp>mlt</samp>, <samp>*</samp>, <samp>mult</samp>, <samp>multiply</samp>, <samp>multiplication</samp>&linebreak;
-Examples: <samp>ncbo --op_typ=mlt 1.nc 2.nc 3.nc</samp>, <samp>ncmult 1.nc 2.nc 3.nc</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Division</itemformat></item>
-</tableterm><tableitem><para>Definition: <var>file_3</var> = <var>file_1</var> / <var>file_2</var>&linebreak;
-Alternate invocation: <command>ncdivide</command>&linebreak;
-<var>op_typ</var> key values: <samp>dvd</samp>, <samp>/</samp>, <samp>divide</samp>, <samp>division</samp>&linebreak;
-Examples: <samp>ncbo --op_typ=/ 1.nc 2.nc 3.nc</samp>, <samp>ncdivide 1.nc 2.nc 3.nc</samp>&linebreak;
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>Care should be taken when using the shortest form of key values,
-i.e., <samp>+</samp>, <samp>-</samp>, <samp>*</samp>, <w>and <samp>/</samp></w>.
-Some of these single characters may have special meanings to the shell
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1270">naked characters</indexterm></cindex>
-<footnote><para><w>A naked</w> (i.e., unprotected or unquoted) <samp>*</samp> is a
-wildcard character.
-<w>A naked</w> <samp>-</samp> may confuse the command line parser.
-<w>A naked</w> <samp>+</samp> and <samp>/</samp> are relatively harmless.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1271">Bash shell</indexterm></cindex>
-Place these characters inside quotes to keep them from being interpreted
-(globbed) by the shell
-<footnote><para>The widely used shell Bash correctly interprets all these
-special characters even when they are not quoted.
-That is, Bash does not prevent <acronym><acronymword>NCO</acronymword></acronym> from correctly interpreting
-the intended arithmetic operation when the following arguments are given
-(without quotes) to <command>ncbo</command>:
-<samp>--op_typ=+</samp>, <samp>--op_typ=-</samp>, <samp>--op_typ=*</samp>,
-and <samp>--op_typ=/</samp></para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1272">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1273">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1274">quotes</indexterm></cindex>
-For example, the following commands are equivalent
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncbo --op_typ=* 1.nc 2.nc 3.nc # Dangerous (shell may try to glob)
-ncbo --op_typ='*' 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
-ncbo --op_typ="*" 1.nc 2.nc 3.nc # Safe ('*' protected from shell)
-ncbo --op_typ=mlt 1.nc 2.nc 3.nc
-ncbo --op_typ=mult 1.nc 2.nc 3.nc
-ncbo --op_typ=multiply 1.nc 2.nc 3.nc
-ncbo --op_typ=multiplication 1.nc 2.nc 3.nc
-ncmult 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmult'
-ncmultiply 1.nc 2.nc 3.nc # First do 'ln -s ncbo ncmultiply'
-</pre></example>
-<para>No particular argument or invocation form is preferred.
-Users are encouraged to use the forms which are most intuitive to them.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1275"><command>alias</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1276"><command>ln -s</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1277">symbolic links</indexterm></cindex>
-<para>Normally, <command>ncbo</command> will fail unless an operation type is specified
-with <samp>-y</samp> (equivalent to <samp>--op_typ</samp>).
-You may create exceptions to this rule to suit your particular tastes,
-in conformance with your site&textrsquo;s policy on <dfn>symbolic links</dfn> to
-executables (files of a different name point to the actual executable).
-For many years, <command>ncdiff</command> was the main binary file operator.
-As a result, many users prefer to continue invoking <command>ncdiff</command>
-rather than memorizing a new command (<samp>ncbo -y <var>sbt</var></samp>) which
-behaves identically to the original <command>ncdiff</command> command.
-However, from a software maintenance standpoint, maintaining a distinct
-executable for each binary operation (e.g., <command>ncadd</command>) is untenable,
-and a single executable, <command>ncbo</command>, is desirable.
-To maintain backward compatibility, therefore, <acronym><acronymword>NCO</acronymword></acronym>
-automatically creates a symbolic link from <command>ncbo</command> to
-<command>ncdiff</command>.
-Thus <command>ncdiff</command> is called an <dfn>alternate invocation</dfn> of
-<command>ncbo</command>.
-<command>ncbo</command> supports many additional alternate invocations which must
-be manually activated.
-Should users or system adminitrators decide to activate them, the
-procedure is simple.
-For example, to use <samp>ncadd</samp> instead of <samp>ncbo --op_typ=add</samp>,
-simply create a symbolic link from <command>ncbo</command> to <command>ncadd</command>
-<footnote><para>The command to do this is <samp>ln -s -f ncbo ncadd</samp></para></footnote>.
-The alternatate invocations supported for each operation type are listed
-above.
-Alternatively, users may always define <samp>ncadd</samp> as an <dfn>alias</dfn> to
-<samp>ncbo --op_typ=add</samp>
-<footnote><para>The command to do this is <samp>alias ncadd='ncbo --op_typ=add'</samp></para></footnote>.
-</para>
-<para>It is important to maintain portability in <acronym><acronymword>NCO</acronymword></acronym> scripts.
-Therefore we recommend that site-specfic invocations (e.g.,
-<samp>ncadd</samp>) be used only in interactive sessions from the
-command-line.
-For scripts, we recommend using the full invocation (e.g.,
-<samp>ncbo --op_typ=add</samp>).
-This ensures portability of scripts between users and sites.
-</para>
-<html endspaces=" ">
-<a name="brd_var"></a> <!&textndash; http://nco.sf.net/nco.html#brd_var &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1278">broadcasting variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1279">rank</indexterm></cindex>
-<para><command>ncbo</command> operates (e.g., adds) variables in <var>file_2</var> with the
-corresponding variables (those with the same name) in <var>file_1</var> and
-stores the results in <var>file_3</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1280">broadcasting variables</indexterm></cindex>
-Variables in <var>file_1</var> or <var>file_2</var> are <dfn>broadcast</dfn> to conform
-to the corresponding variable in the other input file if
-necessary<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> version 4.3.1 (May, 2013), <command>ncbo</command>
-would only broadcast variables in <var>file_2</var> to conform to
-<var>file_1</var>.
-Variables in <var>file_1</var> were <emph>never</emph> broadcast to conform to the
-dimensions in <var>file_2</var>.</para></footnote>.
-Now <command>ncbo</command> is completely symmetric with respect to <var>file_1</var>
-and <var>file_2</var>, i.e.,
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$\rm{file}_1 - \rm{file}_2 = -(\rm{file}_2-\rm{file}_1)$.
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math><var>file_1</var> - <var>file_2</var> = - (<var>file_2</var> - <var>file_1</var></math>.
-<clear name="flg" line=" flg"></clear>
-</para>
-<para>Broadcasting a variable means creating data in non-existing dimensions
-by copying data in existing dimensions.
-For example, a two dimensional variable in <var>file_2</var> can be
-subtracted from a four, three, or two (not one or zero)
-dimensional variable (of the same name) in <code>file_1</code>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1281">anomalies</indexterm></cindex>
-This functionality allows the user to compute anomalies from the mean.
-In the future, we will broadcast variables in <var>file_1</var>, if necessary
-to conform to their counterparts in <var>file_2</var>.
-<!-- c TODO #268 -->
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1282">rank</indexterm></cindex>
-Thus, presently, the number of dimensions, or <dfn>rank</dfn>, of any
-processed variable in <var>file_1</var> must be greater than or equal to the
-rank of the same variable in <var>file_2</var>.
-Of course, the size of all dimensions common to both <var>file_1</var> and
-<var>file_2</var> must be equal.
-</para>
-<para>When computing anomalies from the mean it is often the case that
-<var>file_2</var> was created by applying an averaging operator to a file
-with initially the same dimensions as <var>file_1</var> (often <var>file_1</var>
-itself).
-In these cases, creating <var>file_2</var> with <command>ncra</command> rather than
-<command>ncwa</command> will cause the <command>ncbo</command> operation to fail.
-For concreteness say the record dimension in <code>file_1</code> is
-<code>time</code>.
-If <var>file_2</var> was created by averaging <var>file_1</var> over the
-<code>time</code> dimension with the <command>ncra</command> operator (rather than with
-the <command>ncwa</command> operator), then <var>file_2</var> will have a <code>time</code>
-dimension of <w>size 1</w> rather than having no <code>time</code> dimension at
-all
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1283">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1284"><samp>-b</samp></indexterm></cindex>
-<footnote><para>This is because <command>ncra</command> collapses the record dimension
-to a size <w>of 1</w> (making it a <dfn>degenerate</dfn> dimension), but does
-not remove it, while, unless <samp>-b</samp> is given, <command>ncwa</command> removes
-all averaged dimensions.
-In other words, by default <command>ncra</command> changes variable size though
-not rank, while, <command>ncwa</command> changes both variable size and rank.</para></footnote>.
-In this case the input files to <command>ncbo</command>, <var>file_1</var> and
-<var>file_2</var>, will have unequally sized <code>time</code> dimensions which
-causes <command>ncbo</command> to fail.
-To prevent this from occuring, use <command>ncwa</command> to remove the
-<code>time</code> dimension from <var>file_2</var>.
-See the example below.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1285">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1286"><code>NC_CHAR</code></indexterm></cindex>
-<para><command>ncbo</command> never operates on coordinate variables or variables
-of type <code>NC_CHAR</code> or <code>NC_STRING</code>.
-This ensures that coordinates like (e.g., latitude and longitude) are
-physically meaningful in the output file, <var>file_3</var>.
-This behavior is hardcoded.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1287"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<command>ncbo</command> applies special rules to some
-<acronym><acronymword>CF</acronymword></acronym>-defined (and/or <acronym><acronymword>NCAR CCSM</acronymword></acronym> or <acronym><acronymword>NCAR CCM</acronymword></acronym>
-fields) such as <code>ORO</code>.
-See <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref> for a complete description.
-Finally, we note that <command>ncflint</command> (<pxref label="ncflint-netCDF-File-Interpolator"><xrefnodename>ncflint netCDF File
-Interpolator</xrefnodename></pxref>) is designed for file interpolation.
-As such, it also performs file subtraction, addition, multiplication,
-albeit in a more convoluted way than <command>ncbo</command>.
-</para>
-<html endspaces=" ">
-<a name="grp_brd"></a> <!&textndash; http://nco.sf.net/nco.html#grp_brd &textndash;>
-<a name="brd_grp"></a> <!&textndash; http://nco.sf.net/nco.html#brd_grp &textndash;>
-<a name="gb"></a> <!&textndash; http://nco.sf.net/nco.html#gb &textndash;>
-<a name="GB"></a> <!&textndash; http://nco.sf.net/nco.html#GB &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1288">broadcasting groups</indexterm></cindex>
-<para>Beginning with <acronym><acronymword>NCO</acronymword></acronym> version 4.3.1 (May, 2013), <command>ncbo</command>
-supports <dfn>group broadcasting</dfn>.
-Group broadcasting means processing data based on group patterns in the
-input file(s) and automatically transferring or transforming groups to
-the output file.
-Consider the case where <var>file_1</var> contains multiple groups each with
-the variable <var>v1</var>, while <var>file_2</var> contains <var>v1</var> only in its
-top-level (i.e., root) group.
-Then <command>ncbo</command> will replicate the group structure of <var>file_1</var>
-in the output file, <var>file_3</var>.
-Each group in <var>file_3</var> contains the output of the corresponding
-group in <var>file_1</var> operating on the data in the single group in
-<var>file_2</var>.
-An example is provided below.
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncbo"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncbo &textndash;>
-<a name="xmp_ncdiff"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncdiff &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Say files <file>85_0112.nc</file> and <file>86_0112.nc</file> each contain 12 months
-of data.
-Compute the change in the monthly averages from 1985 to 1986:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncbo 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncdiff 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncbo --op_typ=sub 86_0112.nc 85_0112.nc 86m85_0112.nc
-ncbo --op_typ='-' 86_0112.nc 85_0112.nc 86m85_0112.nc
-</pre></example>
-<noindent></noindent>
-<para>These commands are all different ways of expressing the same thing.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1289">broadcasting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1290">rank</indexterm></cindex>
-<para>The following examples demonstrate the broadcasting feature of
-<command>ncbo</command>.
-Say we wish to compute the monthly anomalies of <code>T</code> from the yearly
-average of <code>T</code> for the year 1985.
-First we create the 1985 average from the monthly data, which is stored
-with the record dimension <code>time</code>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra 85_0112.nc 85.nc
-ncwa -O -a time 85.nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>The second command, <command>ncwa</command>, gets rid of the <code>time</code> dimension
-of <w>size 1</w> that <command>ncra</command> left in <file>85.nc</file>.
-Now none of the variables in <file>85.nc</file> has a <code>time</code> dimension.
-<w>A quicker</w> way to accomplish this is to use <command>ncwa</command> from the
-beginning:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -a time 85_0112.nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>We are now ready to use <command>ncbo</command> to compute the anomalies for 1985:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncdiff -v T 85_0112.nc 85.nc t_anm_85_0112.nc
-</pre></example>
-<noindent></noindent>
-<para>Each of the 12 records in <file>t_anm_85_0112.nc</file> now contains the
-monthly deviation of <code>T</code> from the annual mean of <code>T</code> for each
-gridpoint.
-</para>
-<para>Say we wish to compute the monthly gridpoint anomalies from the zonal
-annual mean.
-<w>A <dfn>zonal mean</dfn></w> is a quantity that has been averaged over the
-longitudinal (or <var>x</var>) direction.
-First we use <command>ncwa</command> to average over longitudinal direction
-<code>lon</code>, creating <file>85_x.nc</file>, the zonal mean of <file>85.nc</file>.
-Then we use <command>ncbo</command> to subtract the zonal annual means from the
-monthly gridpoint data:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -a lon 85.nc 85_x.nc
-ncdiff 85_0112.nc 85_x.nc tx_anm_85_0112.nc
-</pre></example>
-<noindent></noindent>
-<para>This examples works assuming <file>85_0112.nc</file> has dimensions
-<code>time</code> and <code>lon</code>, and that <file>85_x.nc</file> has no <code>time</code>
-or <code>lon</code> dimension.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1291">broadcasting groups</indexterm></cindex>
-<para>Group broadcasting simplifies evaluation of multiple models against
-observations.
-Consider the input file <file>cmip5.nc</file> which contains multiple
-top-level groups <code>cesm</code>, <code>ecmwf</code>, and <code>giss</code>, each of
-which contains the surface air temperature field <code>tas</code>.
-We wish to compare these models to observations stored in <file>obs.nc</file>
-which contains <code>tas</code> only in its top-level (i.e., root) group.
-It is often the case that many models and/or model simulations exist,
-whereas only one observational dataset does.
-We evaluate the models and obtain the bias (difference) between models
-and observations by subtracting <file>obs.nc</file> from <file>cmip5.nc</file>.
-Then <command>ncbo</command> &textldquo;broadcasts&textrdquo; (i.e., replicates) the observational
-data to match the group structure of <file>cmip5.nc</file>, subtracts,
-and then stores the results in the output file, <file>bias.nc</file>
-which has the same group structure as <file>cmip5.nc</file>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncbo -O cmip5.nc obs.nc bias.nc
-% ncks -H -v tas -d time,3 bias.nc
-/cesm/tas
-time[3] tas[3]=-1
-/ecmwf/tas
-time[3] tas[3]=0
-/giss/tas
-time[3] tas[3]=1
-</pre></example>
-<noindent></noindent>
-
-<html endspaces=" ">
-<a name="csn_anm"></a> <!&textndash; http://nco.sf.net/nco.html#csn_anm &textndash;>
-</html>
-<para>As a final example, say we have five years of monthly data (i.e.,
-<w>60 months</w>) stored in <file>8501_8912.nc</file> and we wish to create a
-file which contains the twelve month seasonal cycle of the average
-monthly anomaly from the five-year mean of this data.
-The following method is just one permutation of many which will
-accomplish the same result.
-First use <command>ncwa</command> to create the five-year mean:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -a time 8501_8912.nc 8589.nc
-</pre></example>
-<noindent></noindent>
-<para>Next use <command>ncbo</command> to create a file containing the difference of
-each month&textrsquo;s data from the five-year mean:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncbo 8501_8912.nc 8589.nc t_anm_8501_8912.nc
-</pre></example>
-<noindent></noindent>
-<para>Now use <command>ncks</command> to group together the five January anomalies in
-one file, and use <command>ncra</command> to create the average anomaly for all
-five Januarys.
-These commands are embedded in a shell loop so they are repeated for all
-twelve months:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1292">Bash Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1293">Bourne Shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1294">C Shell</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for idx in {1..12}; do # Bash Shell (version 3.0+)
- idx=`printf "%02d" ${idx}` # Zero-pad to preserve order
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-done
-for idx in 01 02 03 04 05 06 07 08 09 10 11 12; do # Bourne Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-done
-foreach idx (01 02 03 04 05 06 07 08 09 10 11 12) # C Shell
- ncks -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
- ncra foo.${idx} t_anm_8589_${idx}.nc
-end
-</verbatim>
-</example>
-<noindent></noindent>
-<para>Note that <command>ncra</command> understands the <code>stride</code> argument so the
-two commands inside the loop may be combined into the single command
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncra -F -d time,${idx},,12 t_anm_8501_8912.nc foo.${idx}
-</verbatim>
-</example>
-<noindent></noindent>
-<para>Finally, use <command>ncrcat</command> to concatenate the <w>12 average</w> monthly
-anomaly files into one twelve-record file which contains the entire
-seasonal cycle of the monthly anomalies:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
-</pre></example>
-<noindent></noindent>
-
-<page></page>
-<html endspaces=" ">
-<a name="nces"></a> <!&textndash; http://nco.sf.net/nco.html#nces &textndash;>
-<a name="ncea"></a> <!&textndash; http://nco.sf.net/nco.html#ncea &textndash;>
-</html>
-</section>
-<node name="nces-netCDF-Ensemble-Statistics" spaces=" "><nodename>nces netCDF Ensemble Statistics</nodename><nodenext spaces=" ">ncecat netCDF Ensemble Concatenator</nodenext><nodeprev spaces=" ">ncbo netCDF Binary Operator</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>nces</command> netCDF Ensemble Statistics</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1295">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1296">ensemble average</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="30" mergedindex="cp">nces</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-n <var>loop</var>] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sfx sfx]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x] [-y <var>op_typ</var>]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>nces</command> performs gridpoint statistics on variables across an
-arbitrary number (an <dfn>ensemble</dfn>) of <var>input-files</var> and/or of
-input groups within each file.
-Each file (or group) receives an equal weight.
-<command>nces</command> was formerly (until <acronym><acronymword>NCO</acronymword></acronym> version 4.3.9,
-released December, 2013) known as <command>ncea</command> (netCDF Ensemble
-Averager)<footnote spaces="\n"><para>The old ncea command was deprecated in <acronym><acronymword>NCO</acronymword></acronym> version 4.3.9,
-released December, 2013.
-<acronym><acronymword>NCO</acronymword></acronym> will attempt to maintain back-compatibility and work
-as expected with invocations of <command>ncea</command> for as long as possible.
-Please replace <command>ncea</command> by <command>nces</command> in all future work.</para></footnote>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1297">ensemble</indexterm></cindex>
-For example, <command>nces</command> will average a set of files or groups,
-weighting each file or group evenly.
-This is distinct from <command>ncra</command>, which performs statistics only
-over the record dimension(s) (e.g., <var>time</var>), and weights each record
-in each record dimension evenly.
-</para>
-<para>The file or group is the logical unit of organization for the results of
-many scientific studies.
-Often one wishes to generate a file or group which is the statistical
-product (e.g., average) of many separate files or groups.
-This may be to reduce statistical noise by combining the results of a
-large number of experiments, or it may simply be a step in a procedure
-whose goal is to compute anomalies from a mean state.
-In any case, when one desires to generate a file whose statistical
-properties are equally influenced by all the inputs, then <command>nces</command>
-is the operator to use.
-</para>
-<para>Variables in the <var>output-file</var> are the same size as the variable
-hyperslab in each input file or group, and each input file or group
-must be the same size after hyperslabbing
-<footnote><para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.2 (released February, 2014)
-<command>nces</command> allows hyperslabs in all dimensions so long as the
-hyperslabs resolve to the same size.
-The fixed (i.e., non-record) dimensions should be the same size in
-all ensemble members both before and after hyperslabbing, although
-the hypserslabs may (and usually do) change the size of the dimensions
-from the input to the output files.
-Prior to this, <command>nces</command> was only guaranteed to work on hyperslabs
-in the record dimension that resolved to the same size.</para></footnote>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1298">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1299">hyperslab</indexterm></cindex>
-<command>nces</command> does allow files to differ in the record dimension size
-if the requested record hyperslab (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) resolves to the
-same size for all files.
-<command>nces</command> recomputes the record dimension hyperslab limits for
-each input file so that coordinate limits may be used to select equal
-length timeseries from unequal length files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1300"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1301"><acronym><acronymword>AR4</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1302"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
-This simplifies analysis of unequal length timeseries from simulation
-ensembles (e.g., the <acronym><acronymword>CMIP3</acronymword></acronym> <acronym><acronymword>IPCC</acronymword></acronym> <acronym><acronymword>AR4</acronymword></acronym>
-archive).
-</para>
-<html endspaces=" ">
-<a name="nsm_fl"></a> <!&textndash; http://nco.sf.net/nco.html#nsm_fl &textndash;>
-<a name="nsm_grp"></a> <!&textndash; http://nco.sf.net/nco.html#nsm_grp &textndash;>
-<a name="nsm_sfx"></a> <!&textndash; http://nco.sf.net/nco.html#nsm_sfx &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1303"><code>--nsm_fl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1304"><code>--nsm_grp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1305"><code>--ensemble_file</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1306"><code>--ensemble_group</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1307"><code>--nsm_sfx</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1308"><code>--ensemble_suffix</code></indexterm></cindex>
-<para><command>nces</command> works in one of two modes, file ensembles
-or group ensembles.
-File ensembles are the default (equivalent to the old <command>ncea</command>)
-and may also be explicitly specified by the <samp>--nsm_fl</samp> or
-<samp>--ensemble_file</samp> switches.
-To perform statistics on ensembles of groups, a newer feature, use
-<samp>--nsm_grp</samp> or <samp>--ensemble_group</samp>.
-Members of a group ensemble are groups that share the same structure,
-parent group, and nesting level.
-Members must be <dfn>leaf groups</dfn>, i.e., not contain any sub-groups.
-Their contents usually have different values because they are
-realizations of replicated experiments.
-In group ensemble mode <command>nces</command> computes the statistics across
-the ensemble, which may span multiple input files.
-Files may contain members of multiple, distinct ensembles.
-However, all ensembles must have at least one member in the first input
-file.
-Group ensembles behave as an unlimited dimension of datasets:
-they may contain an arbitrary and extensible number of realizations in
-each file, and may be composed from multiple files.
-</para>
-<para>Output statistics in group ensemble mode are stored in the parent group
-by default.
-If the ensemble members are <file>/cesm/cesm_01</file> and
-<file>/cesm/cesm_02</file>, then the computed statistic will be in
-<file>/cesm</file> in the output file.
-The <samp>--nsm_sfx</samp> option instructs nces to instead store output in
-a new child group of the parent created by attaching the suffix
-to the parent group&textrsquo;s name, e.g., <samp>--nsm_sfx='_avg'</samp> would store
-results in the output group <file>/cesm/cesm_avg</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
-nces --nsm_grp --nsm_sfx='_avg' mdl1.nc mdl2.nc mdl3.nc out.nc
-</pre></example>
-
-<para><xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
-distinctions between the statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1309">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1310">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1311"><code>stdin</code></indexterm></cindex>
-As a multi-file operator, <command>nces</command> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-</para>
-<para>Like <command>ncra</command> and <command>ncwa</command>, <command>nces</command> treats coordinate
-variables as a special case.
-Coordinate variables are assumed to be the same in all ensemble members,
-so <command>nces</command> simply copies the coordinate variables that appear in
-ensemble members directly to the output file.
-This has the same effect as averaging the coordinate variable across the
-ensemble, yet does not incur the time- or precision- penalties of
-actually averaging them.
-<command>ncra</command> and <command>ncwa</command> allow coordinate variables to be
-processed only by the linear average operation, regardless of the
-arithmetic operation type performed on the non-coordinate variables
-(<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
-Thus it can be said that the three operators (<command>ncra</command>,
-<command>ncwa</command>, and <command>nces</command>) all average coordinate variables
-(even though <command>nces</command> simply copies them).
-All other requested arithmetic operations (e.g., maximization,
-square-root, RMS) are applied only to non-coordinate variables.
-In these cases the linear average of the coordinate variable will be
-returned.
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncea"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncea &textndash;>
-<a name="xmp_nces"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_nces &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Consider a model experiment which generated five realizations of one
-year of data, say 1985.
-Imagine that the experimenter slightly perturbs the initial conditions
-of the problem before generating each new solution.
-Assume each file contains all twelve months (a seasonal cycle) of data
-and we want to produce a single file containing the ensemble average
-(mean) seasonal cycle.
-Here the numeric filename suffix denotes the realization number
-(<emph>not</emph> the month):
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
-nces 85_0[1-5].nc 85.nc
-nces -n 5,2,1 85_01.nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>These three commands produce identical answers.
-<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
-between these methods.
-The output file, <file>85.nc</file>, is the same size as the inputs files.
-It contains 12 months of data (which might or might not be stored in the
-record dimension, depending on the input files), but each value in the
-output file is the average of the five values in the input files.
-</para>
-<para>In the previous example, the user could have obtained the ensemble
-average values in a particular spatio-temporal region by adding a
-hyperslab argument to the command, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces -d time,0,2 -d lat,-23.5,23.5 85_??.nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>In this case the output file would contain only three slices of data in
-the <var>time</var> dimension.
-These three slices are the average of the first three slices from the
-input files.
-Additionally, only data inside the tropics is included.
-</para>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.9 (released December, 2013)
-<command>nces</command> also works with groups (rather than files) as the
-fundamental unit of the ensemble.
-Consider two ensembles, <code>/ecmwf</code> and <code>/cesm</code> stored across
-three input files <file>mdl1.nc</file>, <file>mdl2.nc</file>, and <file>mdl3.nc</file>.
-Ensemble members would be leaf groups with names like <code>/ecmwf/01</code>,
-<code>/ecmwf/02</code> etc. and <code>/cesm/01</code>, <code>/cesm/02</code>, etc.
-These commands average both ensembles:
-</para><example endspaces=" ">
-<pre xml:space="preserve">nces --nsm_grp mdl1.nc mdl2.nc mdl3.nc out.nc
-nces --nsm_grp --nsm_sfx='_min' --op_typ=min -n 3,1,1 mdl1.nc out.nc
-nces --nsm_grp -g cesm -v tas -d time,0,3 -n 3,1,1 mdl1.nc out.nc
-</pre></example>
-<para>The first command stores averages in the output groups <file>/cesm</file> and
-<file>/ecmwf</file>, while the second stores minima in the output groups
-<file>/cesm/cesm_min</file> and <file>/ecmwf/ecmwf_min</file>:
-The third command demonstrates that sub-setting and hyperslabbing work
-as expected.
-Note that each input file may contain different numbers of members
-of each ensemble, as long as all distinct ensembles contain at least one
-member in the first file.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncecat"></a> <!&textndash; http://nco.sf.net/nco.html#ncecat &textndash;>
-</html>
-</section>
-<node name="ncecat-netCDF-Ensemble-Concatenator" spaces=" "><nodename>ncecat netCDF Ensemble Concatenator</nodename><nodenext spaces=" ">ncflint netCDF File Interpolator</nodenext><nodeprev spaces=" ">nces netCDF Ensemble Statistics</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncecat</command> netCDF Ensemble Concatenator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1312">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1313">ensemble concatenation</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="31" mergedindex="cp">ncecat</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [--gag] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [--md5_digest] [--mrd] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [-u <var>ulm_nm</var>] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncecat</command> aggregates an arbitrary number of input files into a
-single output file using using one of two methods.
-<dfn>Record AGgregation</dfn> (<acronym><acronymword>RAG</acronymword></acronym>), the traditional method employed on
-(flat) netCDF3 files and still the default method, stores
-<var>input-files</var> as consecutive records in the <var>output-file</var>.
-<dfn>Group AGgregation</dfn> (<acronym><acronymword>GAG</acronymword></acronym>) stores <var>input-files</var> as top-level
-groups in the netCDF4 <var>output-file</var>.
-Record Aggregation (<acronym><acronymword>RAG</acronymword></acronym>) makes numerous assumptions about the
-structure of input files whereas Group Aggregation (<acronym><acronymword>GAG</acronymword></acronym>) makes
-none.
-Both methods are described in detail below.
-Since <command>ncecat</command> aggregates all the contents of the input files,
-it can easily produce large output files so it is often helpful to invoke
-subsetting simultaneously (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="rag"></a> <!&textndash; http://nco.sf.net/nco.html#rag &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1314">record aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1315"><acronym><acronymword>RAG</acronymword></acronym></indexterm></cindex>
-<para><acronym><acronymword>RAG</acronymword></acronym> makes each variable (except coordinate variables) in each
-input file into a single record of the same variable in the output file.
-Coordinate variables are not concatenated, they are instead simply
-copied from the first input file to the <var>output-file</var>.
-All <var>input-files</var> must contain all extracted variables (or else
-there would be &textldquo;gaps&textrdquo; in the output file).
-</para>
-<para>A new record dimension is the glue which binds together the input file
-data.
-The new record dimension is defined in the root group of the output file
-so it is visible to all sub-groups.
-Its name is, by default, &textldquo;record&textrdquo;.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1316">unlimited dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1317">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1318"><samp>-u <var>ulm_nm</var></samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1319"><samp>--ulm_nm <var>ulm_nm</var></samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1320"><samp>--rcd_nm <var>ulm_nm</var></samp></indexterm></cindex>
-This default name can be overridden with the <samp>-u <var>ulm_nm</var></samp>
-short option (or the <samp>--ulm_nm</samp> or <samp>rcd_nm</samp> long options).
-</para>
-<para>Each extracted variable must be constant in size and rank across all
-<var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1321">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1322">hyperslab</indexterm></cindex>
-The only exception is that <command>ncecat</command> allows files to differ in
-the record dimension size if the requested record hyperslab
-(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) resolves to the same size for all files.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1323"><acronym><acronymword>CMIP</acronymword></acronym></indexterm></cindex>
-This allows easier gluing/averaging of unequal length timeseries from
-simulation ensembles (e.g., the <acronym><acronymword>CMIP</acronymword></acronym> rchive).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1324">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1325">fix record dimension</indexterm></cindex>
-<para>Classic (i.e., all netCDF3 and <code>NETCDF4_CLASSIC</code>) output files
-can contain only one record dimension.
-<command>ncecat</command> makes room for the new glue record dimension by
-changing the pre-existing record dimension, if any, in the input files
-into a fixed dimension in the output file.
-netCDF4 output files may contain any number of record dimensions, so
-<command>ncecat</command> need not and does not alter the record dimensions,
-if any, of the input files as it copies them to the output file.
-</para>
-<html endspaces=" ">
-<a name="gag"></a> <!&textndash; http://nco.sf.net/nco.html#gag &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1326">group aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1327"><acronym><acronymword>GAG</acronymword></acronym></indexterm></cindex>
-<para><dfn>Group AGgregation</dfn> (<acronym><acronymword>GAG</acronymword></acronym>) stores <var>input-files</var> as
-top-level groups in the <var>output-file</var>.
-No assumption is made about the size or shape or type of a given
-object (variable or dimension or group) in the input file.
-The entire contents of the extracted portion of each input file
-is placed in its own top-level group in <var>output-file</var>, which
-is automatically made as a netCDF4-format file.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1328"><option>--gag</option></indexterm></cindex>
-<para><acronym><acronymword>GAG</acronymword></acronym> has two methods to specify group names for the
-<var>output-file</var>.
-The <samp>-G</samp> option, or its long-option equivalent <samp>--gpe</samp>,
-takes as argument a group path editing description <var>gpe_dsc</var> of
-where to place the results.
-Each input file needs a distinct output group name to avoid namespace
-conflicts in the <var>output-file</var>.
-Hence <command>ncecat</command> automatically creates unique output group names
-based on either the input filenames or the <var>gpe_dsc</var> arguments.
-When the user provides <var>gpe_dsc</var> (i.e., with <samp>-G</samp>), then the
-output groups are formed by enumerating sequential two-digit numeric
-suffixes starting with zero, and appending them to the specified group
-path (<pxref label="Group-Path-Editing"><xrefnodename>Group Path Editing</xrefnodename></pxref>).
-When <var>gpe_dsc</var> is not provided (i.e., user requests <acronym><acronymword>GAG</acronymword></acronym> with
-<samp>--gag</samp> instead of <samp>-G</samp>), then <command>ncecat</command> forms the
-output groups by stripping the input file name of any type-suffix
-(e.g., <code>.nc</code>), and all but the final component of the full
-filename.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat --gag 85.nc 86.nc 87.nc 8587.nc # Output groups 85, 86, 87
-ncecat -G 85_ a.nc b.nc c.nc 8589.nc # Output groups 85_00, 85_01, 85_02
-ncecat -G 85/ a.nc b.nc c.nc 8589.nc # Output groups 85/00, 85/01, 85/02
-</pre></example>
-
-<para>With both <acronym><acronymword>RAG</acronymword></acronym> and <acronym><acronymword>GAG</acronymword></acronym> the <var>output-file</var> size is
-the sum of the sizes of the extracted variables in the input files.
-<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1329">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1330">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1331"><code>stdin</code></indexterm></cindex>
-As a multi-file operator, <command>ncecat</command> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1332"><code>-M</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1333"><code>--glb_mtd_spp</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1334">metadata, global</indexterm></cindex>
-<para>Suppress global metadata copying.
-By default <acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s multi-file operators copy the global metadata
-from the first input file into <var>output-file</var>.
-This helps to preserve the provenance of the output data.
-However, the use of metadata is burgeoning and is not uncommon to
-encounter files with excessive amounts of extraneous metadata.
-Extracting small bits of data from such files leads to output files
-which are much larger than necessary due to the automatically copied
-metadata.
-<command>ncecat</command> supports turning off the default copying of global
-metadata via the <samp>-M</samp> switch (or its long option equivalents,
-<samp>--glb_mtd_spp</samp> and <samp>--global_metadata_suppress</samp>).
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1335">climate model</indexterm></cindex>
-<para>Consider five realizations, <file>85a.nc</file>, <file>85b.nc</file>,
-<w>&dots; <file>85e.nc</file></w> of 1985 predictions from the same climate
-model.
-Then <code>ncecat 85?.nc 85_ens.nc</code> glues together the individual
-realizations into the single file, <file>85_ens.nc</file>.
-If an input variable was dimensioned [<code>lat</code>,<code>lon</code>], it will
-by default have dimensions [<code>record</code>,<code>lat</code>,<code>lon</code>] in
-the output file.
-<w>A restriction</w> of <command>ncecat</command> is that the hyperslabs of the
-processed variables must be the same from file to file.
-Normally this means all the input files are the same size, and contain
-data on different realizations of the same variables.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="32" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1336">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1337">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1338"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1339"><code>scale_factor</code></indexterm></cindex>
-<para>Concatenating a variable packed with different scales across multiple
-datasets is beyond the capabilities of <command>ncecat</command> (and
-<command>ncrcat</command>, the other concatenator (<ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref>).
-<command>ncecat</command> does not unpack data, it simply <emph>copies</emph> the data
-from the <var>input-files</var>, and the metadata from the <emph>first</emph>
-<var>input-file</var>, to the <var>output-file</var>.
-This means that data compressed with a packing convention must use
-the identical packing parameters (e.g., <code>scale_factor</code> and
-<code>add_offset</code>) for a given variable across <emph>all</emph> input files.
-Otherwise the concatenated dataset will not unpack correctly.
-The workaround for cases where the packing parameters differ across
-<var>input-files</var> requires three steps:
-First, unpack the data using <command>ncpdq</command>.
-Second, concatenate the unpacked data using <command>ncecat</command>,
-Third, re-pack the result with <command>ncpdq</command>.
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncecat"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncecat &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Consider a model experiment which generated five realizations of one
-year of data, say 1985.
-You can imagine that the experimenter slightly perturbs the
-initial conditions of the problem before generating each new solution.
-Assume each file contains all twelve months (a seasonal cycle) of data
-and we want to produce a single file containing all the seasonal
-cycles.
-Here the numeric filename suffix denotes the experiment number
-(<emph>not</emph> the month):
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat 85_01.nc 85_02.nc 85_03.nc 85_04.nc 85_05.nc 85.nc
-ncecat 85_0[1-5].nc 85.nc
-ncecat -n 5,2,1 85_01.nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>These three commands produce identical answers.
-<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
-between these methods.
-The output file, <file>85.nc</file>, is five times the size as a single
-<var>input-file</var>.
-It contains <w>60 months</w> of data.
-</para>
-<html endspaces=" ">
-<a name="ncecat_rnm"></a> <!&textndash; http://nco.sf.net/nco.html#ncecat_rnm &textndash;>
-</html>
-<para>One often prefers that the (new) record dimension have a more
-descriptive, context-based name than simply &textldquo;record&textrdquo;.
-This is easily accomplished with the <samp>-u <var>ulm_nm</var></samp> switch:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat -u realization 85_0[1-5].nc 85.nc
-</pre></example>
-<noindent></noindent>
-<para>Users are more likely to understand the data processing history when
-such descriptive coordinates are used.
-</para>
-<html endspaces=" ">
-<a name="dmn_rcd_rm"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_rcd_rm &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1340">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1341">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1342">fix record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1343"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
-<para>Consider a file with an existing record dimension named <code>time</code>.
-and suppose the user wishes to convert <code>time</code> from a record
-dimension to a non-record dimension.
-This may be useful, for example, when the user has another use for the
-record variable.
-The simplest method is to use <samp>ncks --fix_rec_dmn</samp> but another
-possibility is to use <command>ncecat</command> followed by
-<command>ncwa</command>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1344">degenerate dimension</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat in.nc out.nc # Convert time to non-record dimension
-ncwa -a record in.nc out.nc # Remove new degenerate record dimension
-</pre></example>
-<noindent></noindent>
-<para>The second step removes the degenerate record dimension.
-See <ref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></ref> and
-<ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref> for other methods of
-of changing variable dimensionality, including the record dimension.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncflint"></a> <!&textndash; http://nco.sf.net/nco.html#ncflint &textndash;>
-</html>
-</section>
-<node name="ncflint-netCDF-File-Interpolator" spaces=" "><nodename>ncflint netCDF File Interpolator</nodename><nodenext spaces=" ">ncks netCDF Kitchen Sink</nodenext><nodeprev spaces=" ">ncecat netCDF Ensemble Concatenator</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncflint</command> netCDF File Interpolator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1345">interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1346">adding data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1347">multiplying data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1348">addition</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="33" mergedindex="cp">ncflint</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]
-[-F] [--fix_rec_crd] [-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdr_pad <var>nbr</var>]
-[-i <var>var</var>,<var>val3</var>] [-L <var>dfl_lvl</var>] [-l <var>path</var>] [--no_tmp_fl]
-[-O] [-o <var>file_3</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-w <var>wgt1</var>[,<var>wgt2</var>]] [-X ...] [-x]
-<var>file_1</var> <var>file_2</var> [<var>file_3</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncflint</command> creates an output file that is a linear combination of
-the input files.
-This linear combination is a weighted average, a normalized weighted
-average, or an interpolation of the input files.
-Coordinate variables are not acted upon in any case, they are simply
-copied from <var>file_1</var>.
-</para>
-<para>There are two conceptually distinct methods of using <command>ncflint</command>.
-The first method is to specify the weight each input file contributes to
-the output file.
-In this method, the value <var>val3</var> of a variable in the output file
-<var>file_3</var> is determined from its values <var>val1</var> and <var>val2</var> in
-the two input files according to
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$val3 = wgt1 \times val1 + wgt2 \times val2$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math><var>val3</var> = <var>wgt1</var>*<var>val1</var> + <var>wgt2</var>*<var>val2</var></math>
-<clear name="flg" line=" flg"></clear>
-.
-Here at least <var>wgt1</var>, and, optionally, <var>wgt2</var>, are specified on
-the command line with the <samp>-w</samp> (or <samp>--weight</samp> or
-<samp>--wgt_var</samp>) switch.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1349"><code>-w <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1350"><code>--weight <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1351"><code>--wgt_var <var>wgt1</var>[,<var>wgt2</var>]</code></indexterm></cindex>
-If only <var>wgt1</var> is specified then <var>wgt2</var> is automatically
-computed as <math><var>wgt2</var> = 1 − <var>wgt1</var></math>.
-Note that weights larger <w>than 1</w> are allowed.
-Thus it is possible to specify <math><var>wgt1</var> = 2</math> and
-<math><var>wgt2</var> = -3</math>.
-One can use this functionality to multiply all the values in a given
-file by a constant.
-</para>
-<para>The second method of using <command>ncflint</command> is to specify the
-interpolation option <w>with <samp>-i</samp></w> (or with the <samp>--ntp</samp> or
-<samp>--interpolate</samp> long options).
-This is the inverse of the first method in the following sense:
-When the user specifies the weights directly, <command>ncflint</command> has no
-work to do besides multiplying the input values by their respective
-weights and adding together the results to produce the output values.
-It makes sense to use this when the weights are known
-<emph><w>a priori</w></emph>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1352">arrival value</indexterm></cindex>
-<para>Another class of problems has the <dfn>arrival value</dfn> (i.e., <var>val3</var>)
-of a particular variable <var>var</var> known <emph><w>a priori</w></emph>.
-In this case, the implied weights can always be inferred by examining
-the values of <var>var</var> in the input files.
-This results in one equation in two unknowns, <var>wgt1</var> and <var>wgt2</var>:
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$val3 = wgt1 \times val1 + wgt2 \times val2$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math><var>val3</var> = <var>wgt1</var>*<var>val1</var> + <var>wgt2</var>*<var>val2</var></math>
-<clear name="flg" line=" flg"></clear>
-.
-Unique determination of the weights requires imposing the additional
-constraint of normalization on the weights:
-<math><var>wgt1</var> + <var>wgt2</var> = 1</math>.
-Thus, to use the interpolation option, the user specifies <var>var</var>
-and <var>val3</var> with the <samp>-i</samp> option.
-<command>ncflint</command> then computes <var>wgt1</var> and <var>wgt2</var>, and uses these
-weights on all variables to generate the output file.
-Although <var>var</var> may have any number of dimensions in the input
-files, it must represent a single, scalar value.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1353">degenerate dimension</indexterm></cindex>
-Thus any dimensions associated with <var>var</var> must be <dfn>degenerate</dfn>,
-i.e., of size one.
-</para>
-<para>If neither <samp>-i</samp> nor <samp>-w</samp> is specified on the command line,
-<command>ncflint</command> defaults to weighting each input file equally in the
-output file.
-This is equivalent to specifying <samp>-w 0.5</samp> or <samp>-w 0.5,0.5</samp>.
-Attempting to specify both <samp>-i</samp> and <samp>-w</samp> methods in the same
-command is an error.
-</para>
-<para><command>ncflint</command> does not interpolate variables of type <code>NC_CHAR</code>
-and <code>NC_STRING</code>.
-This behavior is hardcoded.
-</para>
-<para>By default <command>ncflint</command> interpolates or multiplies record
-coordinate variables (e.g., time is often stored as a record coordinate)
-not other coordinate variables (e.g., latitude and longitude).
-This is because <command>ncflint</command> is often used to time-interpolate
-between existing files, but is rarely used to spatially interpolate.
-Sometimes however, users wish to multiply entire files by a constant
-that does not multiply any coordinate variables.
-The <samp>--fix_rec_crd</samp> switch was implemented for this purpose
-in <acronym><acronymword>NCO</acronymword></acronym> version 4.2.6 (March, 2013).
-It prevents <command>ncflint</command> from multiplying or interpolating any
-coordinate variables, including record coordinate variables.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1354">missing values</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1355"><code>_FillValue</code></indexterm></cindex>
-<para>Depending on your intuition, <command>ncflint</command> may treat missing values
-unexpectedly.
-Consider a point where the value in one input file, say <var>val1</var>,
-equals the missing value <var>mss_val_1</var> and, at the same point,
-the corresponding value in the other input file <var>val2</var> is not
-misssing (i.e., does not equal <var>mss_val_2</var>).
-There are three plausible answers, and this creates ambiguity.
-</para>
-<para><w>Option one</w> is to set <math><var>val3</var> = <var>mss_val_1</var></math>.
-The rationale is that <command>ncflint</command> is, at heart, an interpolator
-and interpolation involving a missing value is intrinsically undefined.
-<command>ncflint</command> currently implements this behavior since it is the
-most conservative and least likely to lead to misinterpretation.
-</para>
-<para><w>Option two</w> is to output the weighted valid data point, i.e.,
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$val3 = wgt2 \times val2$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math><var>val3</var> = <var>wgt2</var>*<var>val2</var></math>
-<clear name="flg" line=" flg"></clear>
-.
-The rationale for this behavior is that interpolation is really a
-weighted average of known points, so <command>ncflint</command> should weight the
-valid point.
-</para>
-<para><w>Option three</w> is to return the <emph>unweighted</emph> valid point, i.e.,
-<math><var>val3</var> = <var>val2</var></math>.
-This behavior would appeal to those who use <command>ncflint</command> to
-estimate data using the closest available data.
-When a point is not bracketed by valid data on both sides, it is better
-to return the known datum than no datum at all.
-</para>
-<para>The current implementation uses the first approach, <w>Option one</w>.
-If you have strong opinions on this matter, let us know, since we are
-willing to implement the other approaches as options if there is enough
-interest.
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncflint"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncflint &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Although it has other uses, the interpolation feature was designed
-to interpolate <var>file_3</var> to a time between existing files.
-Consider input files <file>85.nc</file> and <file>87.nc</file> containing variables
-describing the state of a physical system at times <math><code>time</code> =
-85</math> and <math><code>time</code> = 87</math>.
-Assume each file contains its timestamp in the scalar variable
-<code>time</code>.
-Then, to linearly interpolate to a file <file>86.nc</file> which describes
-the state of the system at time at <code>time</code> = 86, we would use
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint -i time,86 85.nc 87.nc 86.nc
-</pre></example>
-
-<para>Say you have observational data covering January and April 1985 in two
-files named <file>85_01.nc</file> and <file>85_04.nc</file>, respectively.
-Then you can estimate the values for February and March by interpolating
-the existing data as follows.
-Combine <file>85_01.nc</file> and <file>85_04.nc</file> in a 2:1 ratio to make
-<file>85_02.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint -w 0.667 85_01.nc 85_04.nc 85_02.nc
-ncflint -w 0.667,0.333 85_01.nc 85_04.nc 85_02.nc
-</pre></example>
-
-<para>Multiply <file>85.nc</file> <w>by 3</w> and <w>by −2</w> and add them
-together to make <file>tst.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint -w 3,-2 85.nc 85.nc tst.nc
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1356">null operation</indexterm></cindex>
-<para>This is an example of a null operation, so <file>tst.nc</file> should be
-identical (within machine precision) to <file>85.nc</file>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1357">multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1358">file multiplication</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1359">scaling</indexterm></cindex>
-<para>Multiply all the variables except the coordinate variables in the file
-<file>emissions.nc</file> by <w>by 0.8</w>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_emissions.nc
-</pre></example>
-<noindent></noindent>
-<para>The use of <samp>--fix_rec_crd</samp> ensures, e.g., that the <code>time</code>
-coordinate, if any, is not scaled (i.e., multiplied).
-</para>
-<para>Add <file>85.nc</file> to <file>86.nc</file> to obtain <file>85p86.nc</file>,
-then subtract <file>86.nc</file> from <file>85.nc</file> to obtain <file>85m86.nc</file>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint -w 1,1 85.nc 86.nc 85p86.nc
-ncflint -w 1,-1 85.nc 86.nc 85m86.nc
-ncdiff 85.nc 86.nc 85m86.nc
-</pre></example>
-<noindent></noindent>
-<para>Thus <command>ncflint</command> can be used to mimic some <command>ncbo</command>
-operations.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1360">broadcasting variables</indexterm></cindex>
-However this is not a good idea in practice because <command>ncflint</command>
-does not broadcast (<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>) conforming
-variables during arithmetic.
-Thus the final two commands would produce identical results except that
-<command>ncflint</command> would fail if any variables needed to be broadcast.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1361"><code>units</code></indexterm></cindex>
-<para>Rescale the dimensional units of the surface pressure <code>prs_sfc</code>
-from Pascals to hectopascals (millibars)
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncflint -C -v prs_sfc -w 0.01,0.0 in.nc in.nc out.nc
-ncatted -a units,prs_sfc,o,c,millibar out.nc
-</pre></example>
-<noindent></noindent>
-
-<page></page>
-<html endspaces=" ">
-<a name="ncks"></a> <!&textndash; http://nco.sf.net/nco.html#ncks &textndash;>
-</html>
-</section>
-<node name="ncks-netCDF-Kitchen-Sink" spaces=" "><nodename>ncks netCDF Kitchen Sink</nodename><nodenext spaces=" ">ncpdq netCDF Permute Dimensions Quickly</nodenext><nodeprev spaces=" ">ncflint netCDF File Interpolator</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncks</command> netCDF Kitchen Sink</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1362">kitchen sink</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1363">printing files contents</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1364">printing variables</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="34" mergedindex="cp">ncks</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks [-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b <var>binary-file</var>] [-C] [-c] [--cdl]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F] [--fix_rec_dmn <var>dim</var>]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [--grp_xtr_var_xcl] [-H] [-h] [--hdn] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M] [-m] [--mk_rec_dmn <var>dim</var>] [--md5_digest]
-[--no_blank] [--no_tmp_fl] [-O] [-o <var>output-file</var>] [-P] [-p <var>path</var>] [--ppc ...]
-[-Q] [-q] [-R] [-r] [--rad] [--ram_all] [-s <var>format</var>]
-[-u] [--unn] [-V] [-v <var>var</var>[,&dots;]] [-X ...] [-x] [--xml]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1365"><command>ncextr</command></indexterm></cindex>
-<para>The nickname &textldquo;kitchen sink&textrdquo; is a catch-all because <command>ncks</command>
-combines most features of <command>ncdump</command> and <command>nccopy</command> with
-extra features to extract, hyperslab, multi-slab, sub-set, and translate
-into one versatile utility.
-<command>ncks</command> extracts (a subset of the) data from <var>input-file</var> and
-and writes (or pastes) it in netCDF format to <var>output-file</var>, and
-optionally writes it in flat binary format to <file>binary-file</file>, and
-optionally prints it to screen.
-</para>
-<para><command>ncks</command> prints netCDF input data in <acronym><acronymword>ASCII</acronymword></acronym>,
-<acronym><acronymword>CDL</acronymword></acronym>, or <acronym><acronymword>NcML</acronymword></acronym> text formats <code>stdout</code>, like (an
-extended version of) <command>ncdump</command>.
-By default <command>ncks</command> prints data in a tabular format intended to be
-easy to search for the data you want, one datum per screen line, with
-all dimension subscripts and coordinate values (if any) preceding the
-datum.
-Option <samp>-s</samp> (or long options <samp>--sng_fmt</samp> and <samp>--string</samp>)
-permits the user to format data using C-style format strings, while
-option <samp>--cdl</samp> outputs <acronym><acronymword>CDL</acronymword></acronym> and option <samp>--xml</samp>
-outputs <acronym><acronymword>NcML</acronymword></acronym>.
-<command>ncks</command> exposes many flexible controls over printed output,
-including <acronym><acronymword>CDL</acronymword></acronym> and <acronym><acronymword>NcML</acronymword></acronym>.
-</para>
-<para>Options <samp>-5</samp>, <samp>-a</samp>, <samp>--cdl</samp>, <samp>-F</samp> , <samp>-H</samp>,
-<samp>--hdn</samp>, <samp>-M</samp>, <samp>-m</samp>, <samp>-P</samp>, <samp>-Q</samp>, <samp>-q</samp>,
-<samp>-s</samp>, <samp>-u</samp>, <samp>-V</samp>, and <samp>--xml</samp> (and their long option
-counterparts) control the formatted appearance of the data.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1366">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1367">attributes, global</indexterm></cindex>
-<para><command>ncks</command> extracts (and optionally creates a new netCDF file
-comprised of) only selected variables from the input file
-(similar to the old <command>ncextr</command> specification).
-Only variables and coordinates may be specifically included or
-excluded&textmdash;all global attributes and any attribute associated with an
-extracted variable are copied to the screen and/or output netCDF file.
-Options <samp>-c</samp>, <samp>-C</samp>, <samp>-v</samp>, and <samp>-x</samp> (and their long
-option synonyms) control which variables are extracted.
-</para>
-<para><command>ncks</command> extracts hyperslabs from the specified variables
-(<command>ncks</command> implements the original <command>nccut</command> specification).
-Option <samp>-d</samp> controls the hyperslab specification.
-Input dimensions that are not associated with any output variable do
-not appear in the output netCDF.
-This feature removes superfluous dimensions from netCDF files.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1368">appending data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1369">merging files</indexterm></cindex>
-<para><command>ncks</command> will append variables and attributes from the
-<var>input-file</var> to <var>output-file</var> if <var>output-file</var> is a
-pre-existing netCDF file whose relevant dimensions conform to dimension
-sizes of <var>input-file</var>.
-The append features of <command>ncks</command> are intended to provide a
-rudimentary means of adding data from one netCDF file to another,
-conforming, netCDF file.
-If naming conflicts exist between the two files, data in
-<var>output-file</var> is usually overwritten by the corresponding data from
-<var>input-file</var>.
-Thus, when appending, the user should backup <var>output-file</var> in case
-valuable data are inadvertantly overwritten.
-</para>
-<para>If <var>output-file</var> exists, the user will be queried whether to
-<dfn>overwrite</dfn>, <dfn>append</dfn>, or <dfn>exit</dfn> the <command>ncks</command> call
-completely.
-Choosing <dfn>overwrite</dfn> destroys the existing <var>output-file</var> and
-create an entirely new one from the output of the <command>ncks</command> call.
-Append has differing effects depending on the uniqueness of the
-variables and attributes output by <command>ncks</command>: If a variable or
-attribute extracted from <var>input-file</var> does not have a name conflict
-with the members of <var>output-file</var> then it will be added to
-<var>output-file</var> without overwriting any of the existing contents of
-<var>output-file</var>.
-In this case the relevant dimensions must agree (conform) between the
-two files; new dimensions are created in <var>output-file</var> as required.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1370">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1371">attributes, global</indexterm></cindex>
-When a name conflict occurs, a global attribute from <var>input-file</var>
-will overwrite the corresponding global attribute from
-<var>output-file</var>.
-If the name conflict occurs for a non-record variable, then the
-dimensions and type of the variable (and of its coordinate dimensions,
-if any) must agree (conform) in both files.
-Then the variable values (and any coordinate dimension values)
-from <var>input-file</var> will overwrite the corresponding variable values
-(and coordinate dimension values, if any) in <var>output-file</var>
-<footnote spaces="\n"><para>Those familiar with netCDF mechanics might wish to know what is
-happening here: <command>ncks</command> does not attempt to redefine the variable
-in <var>output-file</var> to match its definition in <var>input-file</var>,
-<command>ncks</command> merely copies the values of the variable and its
-coordinate dimensions, if any, from <var>input-file</var> to
-<var>output-file</var>.
-</para></footnote>.
-</para>
-<para>Since there can only be one record dimension in a file, the record
-dimension must have the same name (though not necessarily the same size) in
-both files if a record dimension variable is to be appended.
-If the record dimensions are of differing sizes, the record dimension of
-<var>output-file</var> will become the greater of the two record dimension
-sizes, the record variable from <var>input-file</var> will overwrite any
-counterpart in <var>output-file</var> and fill values will be written to any
-gaps left in the rest of the record variables (I think).
-In all cases variable attributes in <var>output-file</var> are superseded by
-attributes of the same name from <var>input-file</var>, and left alone if
-there is no name conflict.
-</para>
-<para>Some users may wish to avoid interactive <command>ncks</command> queries about
-whether to overwrite existing data.
-For example, batch scripts will fail if <command>ncks</command> does not receive
-responses to its queries.
-Options <samp>-O</samp> and <samp>-A</samp> are available to force overwriting
-existing files and variables, respectively.
-</para>
-<unnumberedsubsec spaces=" "><sectiontitle>Options specific to <command>ncks</command></sectiontitle>
-
-<para>The following summarizes features unique to <command>ncks</command>.
-Features common to many operators are described in
-<ref label="Shared-features"><xrefnodename>Shared features</xrefnodename></ref>.
-</para>
-<table commandarg="samp" spaces=" " endspaces=" ">
-<beforefirstitem>
-<html endspaces=" ">
-<a name="-5"></a> <!&textndash; http://nco.sf.net/nco.html#-5 &textndash;>
-<a name="5"></a> <!&textndash; http://nco.sf.net/nco.html#5 &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1372"><code>-5</code></indexterm></cindex>
-</beforefirstitem><tableentry><tableterm><item spaces=" "><itemformat command="samp">-5 </itemformat></item>
-</tableterm><tableitem><para>Print data to screen alphabetically by group, and alphabetically by
-variable within each group.
-This ordering here is used by default in <acronym><acronymword>CDL</acronymword></acronym>-mode printing,
-and may be selected for traditional mode printing with <samp>-5</samp>
-(The switch for invocation may change to something more descriptive in
-the future).
-</para>
-<html endspaces=" ">
-<a name="abc"></a> <!&textndash; http://nco.sf.net/nco.html#abc &textndash;>
-<a name="alphabetize"></a> <!&textndash; http://nco.sf.net/nco.html#alphabetize &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1373">alphabetization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1374">sort alphabetically</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1375"><code>-a</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1376"><code>--abc</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1377"><code>--alphabetize</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-a</itemformat></item>
-</tableterm><tableitem><para>Do not alphabetize extracted fields.
-By default, the specified output variables are extracted, printed, and
-written to disk in alphabetical order.
-This tends to make long output lists easier to search for particular
-variables.
-Specifying <code>-a</code> results in the variables being extracted, printed,
-and written to disk in the order in which they were saved in the input
-file.
-Thus <code>-a</code> retains the original ordering of the variables.
-Also <samp>--abc</samp> and <samp>--alphabetize</samp>.
-</para>
-<html endspaces=" ">
-<a name="bnr"></a> <!&textndash; http://nco.sf.net/nco.html#bnr &textndash;>
-<a name="binary"></a> <!&textndash; http://nco.sf.net/nco.html#binary &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1378">binary format</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1379"><code>-b</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1380"><code>--fl_bnr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1381"><code>--bnr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1382"><code>--binary</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-b <file>file</file></itemformat></item>
-</tableterm><tableitem><para>Activate native machine binary output writing to binary file
-<file>file</file>.
-Also <samp>--fl_bnr</samp> and <samp>--binary-file</samp>.
-Writing packed variables in binary format is not supported.
-Metadata is never output to the binary file.
-Examine the netCDF output file to see the variables in the binary file.
-Use the <samp>-C</samp> switch, if necessary, to avoid wanting unwanted
-coordinates to the binary file:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
-% ls -l ~/bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_rec_var
-200
-% ls -l ~/bnr.dat
-% ncks -C -O -v one_dmn_rec_var -b ~/bnr.dat -p ~/nco/data in.nc ~/out.nc
-% ls -l ~/bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only
-40
-</pre></example>
-
-<html endspaces=" ">
-<a name="dmn_fix_mk"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_fix_mk &textndash;>
-<a name="fix_rec_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#fix_rec_dmn &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1383">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1384">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1385"><code>--fix_rec_dmn <var>dim</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1386"><code>--no_rec_dmn <var>dim</var></code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--fix_rec_dmn</itemformat></item>
-</tableterm><tableitem><para>Change record dimension <var>dim</var> in the input file into a fixed
-dimension in the output file.
-Also <samp>--no_rec_dmn</samp>.
-Before <acronym><acronymword>NCO</acronymword></acronym> version 4.2.5 (January, 2013), the syntax for
-<code>--fix_rec_dmn</code> did not permit or require the specification of
-the dimension name <var>dim</var>.
-This is because the feature only worked on netCDF3 files, which support
-only one record dimension, so specifying its name was not necessary.
-netCDF4 files allow an arbitrary number of record dimensions, so the
-user must specify which record dimension to fix.
-The decision was made that starting with <acronym><acronymword>NCO</acronymword></acronym> version 4.2.5
-(January, 2013), it is always required to specify the dimension name to
-fix regardless of the netCDF file type.
-This keeps the code simple, and is symmetric with the syntax for
-<code>--mk_rec_dmn</code>, described next.
-</para>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), the argument
-<code>all</code> may be given to <samp>--fix_rec_dmn</samp> to convert <emph>all</emph>
-record dimensions to fixed dimensions in the output file.
-Previously, <samp>--fix_rec_dmn</samp> only allowed one option, the name of a
-single record dimension to be fixed.
-Now it is simple to simultaneously fix all record dimensions.
-This is useful (and nearly mandatory) when flattening netCDF4 files that
-have multiple record dimensions per group into netCDF3 files (which are
-limited to at most one record dimension) (<pxref label="Group-Path-Editing"><xrefnodename>Group Path Editing</xrefnodename></pxref>).
-</para>
-<html endspaces=" ">
-<a name="hdn"></a> <!&textndash; http://nco.sf.net/nco.html#hdn &textndash;>
-<a name="hidden"></a> <!&textndash; http://nco.sf.net/nco.html#hidden &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1387">hidden attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1388">special attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1389"><code>--hdn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1390"><code>--hidden</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1391"><code>_SOURCE_FORMAT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1392"><code>_Format</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1393"><code>_DeflateLevel</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1394"><code>_Shuffle</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1395"><code>_Storage</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1396"><code>_ChunkSizes</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1397"><code>_Endianness</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1398"><code>_Fletcher32</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1399"><code>_NOFILL</code></indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), the <samp>--hdn</samp>
-or <samp>--hidden</samp> options print hidden (aka special) attributes.
-This is equivalent to <samp>ncdump -s</samp>.
-Hidden attributes include: <code>_Format</code>, <code>_DeflateLevel</code>,
-<code>_Shuffle</code>, <code>_Storage</code>, <code>_ChunkSizes</code>,
-<code>_Endianness</code>, <code>_Fletcher32</code>, and <code>_NOFILL</code>.
-Previously <command>ncks</command> ignored all these attributes in
-<acronym><acronymword>CDL</acronymword></acronym>/<acronym><acronymword>XML</acronymword></acronym> modes.
-Now it prints these attributes as appropriate.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.6 (September, 2014), <samp>--hdn</samp>
-also prints the extended file format (i.e., the format of the file
-or server supplying the data) as <code>_SOURCE_FORMAT</code>.
-Users are referred to the
-<uref><urefurl>http://www.unidata.ucar.edu/software/netcdf/docs</urefurl><urefdesc spaces=" ">Unidata netCDF Documentation</urefdesc></uref>,
-or the man pages for <command>ncgen</command> or <command>ncdump</command>, for
-detailed descriptions of the meanings of these attributes.
-</para>
-<html endspaces=" ">
-<a name="cdl"></a> <!&textndash; http://nco.sf.net/nco.html#cdl &textndash;>
-<a name="hdp"></a> <!&textndash; http://nco.sf.net/nco.html#hdp &textndash;>
-<a name="hncgen"></a> <!&textndash; http://nco.sf.net/nco.html#hncgen &textndash;>
-<a name="ncgen-hdf"></a> <!&textndash; http://nco.sf.net/nco.html#ncgen-hdf &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1400"><command>hdp</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1401"><command>ncgen</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1402"><command>ncgen-hdf</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1403"><command>hncgen</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1404"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1405"><code>--cdl</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1406"><acronym><acronymword>CDL</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1407"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1408"><acronym><acronymword>HDF4</acronymword></acronym></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--cdl </itemformat></item>
-</tableterm><tableitem><para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.3 (July, 2013), <command>ncks</command> can
-print extracted data and metadata to screen (i.e., <code>stdout</code>) as
-valid <acronym><acronymword>CDL</acronymword></acronym> (network Common data form Description Language).
-<acronym><acronymword>CDL</acronymword></acronym> is the human-readable &textldquo;lingua franca&textrdquo; of netCDF ingested by
-<command>ncgen</command> and excreted by <command>ncdump</command>.
-Compare <command>ncks</command> &textldquo;traditional&textrdquo; with <acronym><acronymword>CDL</acronymword></acronym> printing:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncks -v one ~/nco/data/in.nc
-one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
-one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
-one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
-one = 1
-
-zender at roulee:~$ ncks --cdl -v one ~/nco/data/in.nc
-netcdf in {
-
- variables:
- float one ;
- one:long_name = "one" ;
-
- data:
- one = 1 ;
-
-} // group /
-</verbatim>
-</example>
-<para><command>ncgen</command> converts <acronym><acronymword>CDL</acronymword></acronym>-mode output into a netCDF file:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks --cdl -v one ~/nco/data/in.nc > ~/in.cdl
-ncgen -k netCDF-4 -b -o ~/in.nc ~/in.cdl
-ncks -v one ~/in.nc
-</pre></example>
-<para>The <acronym><acronymword>HDF</acronymword></acronym> version of <command>ncgen</command>, often named
-<command>hncgen</command> or <command>ncgen-hdf</command>, converts netCDF3 <acronym><acronymword>CDL</acronymword></acronym>
-into an <acronym><acronymword>HDF</acronymword></acronym> file:
-</para><example endspaces=" ">
-<pre xml:space="preserve">/usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local builds)
-/usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)
-/usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Debian packages?)
-hdp dumpsds ~/in.hdf # ncdump/h5dump-equivalent for HDF4
-</pre></example>
-<para>Note that <acronym><acronymword>HDF4</acronymword></acronym> does not support netCDF-style groups, so the
-above commands fail when the input file contains groups.
-Only netCDF4 and <acronym><acronymword>HDF5</acronymword></acronym> support groups.
-In our experience the <acronym><acronymword>HDF</acronymword></acronym> <command>ncgen</command> command, by whatever
-name installed, is not robust and can fail on valid netCDF3
-<acronym><acronymword>CDL</acronymword></acronym>.
-</para>
-<html endspaces=" ">
-<a name="dmn_rec_mk"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_rec_mk &textndash;>
-<a name="mk_rec_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#mk_rec_dmn &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1409">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1410">fixed dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1411">fix record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1412"><code>--mk_rec_dmn <var>dim</var></code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--mk_rec_dmn <var>dim</var></itemformat></item>
-</tableterm><tableitem><para>Change existing dimension <var>dim</var> to a record dimension in the output file.
-This is the most straightforward way of changing a dimension to a/the
-record dimension, and works fine in most cases.
-See <ref label="ncecat-netCDF-Ensemble-Concatenator"><xrefnodename>ncecat netCDF Ensemble Concatenator</xrefnodename></ref> and
-<ref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></ref> for other methods of
-changing variable dimensionality, including the record dimension.
-</para>
-<html endspaces=" ">
-<a name="H"></a> <!&textndash; http://nco.sf.net/nco.html#H &textndash;>
-<a name="data"></a> <!&textndash; http://nco.sf.net/nco.html#data &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1413"><code>-H</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1414"><code>--data</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1415"><code>--hieronymus</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-H </itemformat></item>
-</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying data (not metadata).
-Also activated using <samp>--print</samp> or <samp>--prn</samp>.
-By default <command>ncks</command> prints all metadata and data to screen if
-no netCDF output file is specified.
-Use <samp>-H</samp> to print data to screen if a netCDF output is specified,
-or to restrict printing to data (no metadata) when no netCDF output is
-specified.
-Also use <samp>-H</samp> to turn-off copying data (not metadata) to an output
-file.
-Unless otherwise specified (with <code>-s</code>), each element of the data
-hyperslab prints on a separate line containing the names, indices,
-and, values, if any, of all of the variables dimensions.
-The dimension and variable indices refer to the location of the
-corresponding data element with respect to the variable as stored on
-disk (i.e., not the hyperslab).
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-</pre></example>
-<para>Printing the same variable with the <samp>-F</samp> option shows the same
-variable indexed with Fortran conventions
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -F -C -v three_dmn_var in.nc
-lon(1)=0 lev(1)=100 lat(1)=-90 three_dmn_var(1)=0
-lon(2)=90 lev(1)=100 lat(1)=-90 three_dmn_var(2)=1
-lon(3)=180 lev(1)=100 lat(1)=-90 three_dmn_var(3)=2
-...
-</pre></example>
-<para>Printing a hyperslab does not affect the variable or dimension indices
-since these indices are relative to the full variable (as stored in the
-input file), and the input file has not changed.
-However, if the hyperslab is saved to an output file and those values
-are printed, the indices will change:
-<!-- c fxm: replace with new MSA output style -->
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out.nc
-...
-lat[1]=90 lev[2]=1000 lon[0]=0 three_dmn_var[20]=20
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lat[0]=90 lev[0]=1000 lon[0]=0 three_dmn_var[0]=20
-lat[0]=90 lev[0]=1000 lon[1]=90 three_dmn_var[1]=21
-lat[0]=90 lev[0]=1000 lon[2]=180 three_dmn_var[2]=22
-lat[0]=90 lev[0]=1000 lon[3]=270 three_dmn_var[3]=23
-</pre></example>
-
-<html endspaces=" ">
-<a name="Metadata"></a> <!&textndash; http://nco.sf.net/nco.html#Metadata &textndash;>
-<a name="M"></a> <!&textndash; http://nco.sf.net/nco.html#M &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1416"><code>-M</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1417"><code>--Mtd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1418"><code>--Metadata</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1419">metadata, global</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-M</itemformat></item>
-</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying global and group metadata.
-This includes file summary information and global and group attributes.
-Also <samp>--Mtd</samp> and <samp>--Metadata</samp>.
-By default <command>ncks</command> prints global metadata to screen if no netCDF
-output file and no variable extraction list is specified (with <samp>-v</samp>).
-Use <samp>-M</samp> to print global metadata to screen if a netCDF output is
-specified, or if a variable extraction list is specified (with <samp>-v</samp>).
-Use <samp>-M</samp> to turn-off copying of global and group metadata when
-copying, subsetting, or appending to an output file.
-</para>
-<html endspaces=" ">
-<a name="prn_tbl"></a> <!&textndash; http://nco.sf.net/nco.html#prn_tbl &textndash;>
-</html>
-<para>The various combinations of printing switches can be confusing.
-In an attempt to anticipate what most users want to do, <command>ncks</command>
-uses context-sensitive defaults for printing.
-Our goal is to minimize the use of switches required to accomplish the
-common operations.
-We assume that users creating a new file or overwriting (e.g., with
-<samp>-O</samp>) an existing file usually wish to copy all global and
-variable-specific attributes to the new file.
-In contrast, we assume that users appending (e.g., with <samp>-A</samp> an
-explicit variable list from one file to another usually wish to copy
-only the variable-specific attributes to the output file.
-The switches <samp>-H</samp>, <samp>-M</samp>, and <samp>-m</samp> switches are
-implemented as toggles which reverse the default behavior.
-The most confusing aspect of this is that <samp>-M</samp> inhibits copying
-global metadata in overwrite mode and causes copying of global
-metadata in append mode.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks in.nc # Print VAs and GAs
-ncks -v one in.nc # Print VAs not GAs
-ncks -M -v one in.nc # Print GAs only
-ncks -m -v one in.nc # Print VAs only
-ncks -M -m -v one in.nc # Print VAs and GAs
-ncks -O in.nc out.nc # Copy VAs and GAs
-ncks -O -v one in.nc out.nc # Copy VAs and GAs
-ncks -O -M -v one in.nc out.nc # Copy VAs not GAs
-ncks -O -m -v one in.nc out.nc # Copy GAs not VAs
-ncks -O -M -m -v one in.nc out.nc # Copy only data (no atts)
-ncks -A in.nc out.nc # Append VAs and GAs
-ncks -A -v one in.nc out.nc # Append VAs not GAs
-ncks -A -M -v one in.nc out.nc # Append VAs and GAs
-ncks -A -m -v one in.nc out.nc # Append only data (no atts)
-ncks -A -M -m -v one in.nc out.nc # Append GAs not VAs
-</pre></example>
-<para>where <code>VAs</code> and <code>GAs</code> denote variable and group/global
-attributes, respectively.
-</para>
-<html endspaces=" ">
-<a name="m"></a> <!&textndash; http://nco.sf.net/nco.html#m &textndash;>
-<a name="mtd"></a> <!&textndash; http://nco.sf.net/nco.html#mtd &textndash;>
-<a name="metadata"></a> <!&textndash; http://nco.sf.net/nco.html#metadata &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1420"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1421"><code>-m</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1422"><code>--mtd</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1423"><code>--metadata</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1424">metadata</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-m</itemformat></item>
-</tableterm><tableitem><para>Turn-on printing to screen or turn-off copying variable metadata.
-Using <samp>-m</samp> will print variable metadata to screen (similar to
-<kbd>ncdump -h</kbd>).
-This displays all metadata pertaining to each variable, one variable
-at a time.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1425">chunking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1426">compression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1427">deflation</indexterm></cindex>
-This includes information on the storage properties of the variable,
-such as whether it employs chunking, compression, or packing.
-Also activated using <samp>--mtd</samp> and <samp>--metadata</samp>.
-The <command>ncks</command> default behavior is to print variable metadata to
-screen if no netCDF output file is specified.
-Use <samp>-m</samp> to print variable metadata to screen if a netCDF output is
-specified.
-Also use <samp>-m</samp> to turn-off copying of variable metadata to an output
-file.
-</para>
-<html endspaces=" ">
-<a name="no_blank"></a> <!&textndash; http://nco.sf.net/nco.html#no_blank &textndash;>
-<a name="noblank"></a> <!&textndash; http://nco.sf.net/nco.html#noblank &textndash;>
-<a name="no-blank"></a> <!&textndash; http://nco.sf.net/nco.html#no-blank &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1428"><code>--no_blank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1429"><code>--noblank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1430"><code>--no-blank</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1431">blank</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1432">missing values</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--no_blank</itemformat></item>
-</tableterm><tableitem><para>Print numeric representation of missing values.
-As of <acronym><acronymword>NCO</acronymword></acronym>
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.2.2 (October, 2012), <acronym><acronymword>NCO</acronymword></acronym> prints
-missing values as blanks (i.e., the underscore character <samp>_</samp>) by default.
-To enable the old behavior of printing the numeric representation of
-missing values (e.g., <code>1.0e36</code>), use the <samp>--no_blank</samp> switch.
-Also activated using <samp>--noblank</samp> or <samp>--no-blank</samp>.
-</para>
-<html endspaces=" ">
-<a name="P"></a> <!&textndash; http://nco.sf.net/nco.html#P &textndash;>
-<a name="prn"></a> <!&textndash; http://nco.sf.net/nco.html#prn &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1433"><code>-P</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1434"><code>--print</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1435"><code>--prn</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-P </itemformat></item>
-</tableterm><tableitem><para>Print data, metadata, and units to screen.
-The <samp>-P</samp> switch is a convenience abbreviation for
-<samp>-C -H -M -m -u</samp>.
-Also activated using <samp>--print</samp> or <samp>--prn</samp>.
-This set of switches is useful for exploring file contents.
-</para>
-<html endspaces=" ">
-<a name="Q"></a> <!&textndash; http://nco.sf.net/nco.html#Q &textndash;>
-<a name="quiet"></a> <!&textndash; http://nco.sf.net/nco.html#quiet &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1436"><code>-Q</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1437"><code>--quiet</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-Q</itemformat></item>
-</tableterm><tableitem><para>Print quietly, meaning omit dimension names, indices, and coordinate
-values when printing arrays.
-Variable (not dimension) indices are printed.
-Variable names appear flush left in the output:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-three_dmn_rec_var[0]=1
-...
-</verbatim>
-</example>
-<para>This helps locate specific variables in lists with many variables and
-different dimensions.
-See also the <samp>-V</samp> option, which omits all names and indices and
-prints only variable values.
-</para>
-<html endspaces=" ">
-<a name="q"></a> <!&textndash; http://nco.sf.net/nco.html#q &textndash;>
-<a name="quench"></a> <!&textndash; http://nco.sf.net/nco.html#quench &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1438"><code>-q</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1439"><code>--quench</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1440">quench</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-q </itemformat></item>
-</tableterm><tableitem><para>Quench (turn-off) all printing to screen.
-This overrides the setting of all print-related switches, equivalent to
-<kbd>-H -M -m</kbd> when in single-file printing mode.
-When invoked with <code>-R</code> (<pxref label="Retaining-Retrieved-Files"><xrefnodename>Retaining Retrieved Files</xrefnodename></pxref>), <command>ncks</command>
-automatically sets <code>-q</code>.
-This allows <command>ncks</command> to retrieve remote files without
-automatically trying to print them.
-Also <samp>--quench</samp>.
-</para>
-<html endspaces=" ">
-<a name="rad"></a> <!&textndash; http://nco.sf.net/nco.html#rad &textndash;>
-<a name="orphan"></a> <!&textndash; http://nco.sf.net/nco.html#orphan &textndash;>
-<a name="rph_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#rph_dmn &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1441"><code>--rad</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1442">orphan dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1443"><code>--retain_all_dimensions</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1444"><code>--orphan_dimensions</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1445"><code>--rph_dmn</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--rad</itemformat></item>
-</tableterm><tableitem><para>Retain all dimensions.
-When invoked with <code>--rad</code> (Retain All Dimensions),
-<command>ncks</command> copies each dimension in the input file to the output
-file, regardless of whether the dimension is utilized by any variables.
-Normally <command>ncks</command> discards &textldquo;orphan dimensions&textrdquo;, i.e., dimensions
-not referenced by any variables.
-This switch allows users to keep non-referenced dimensions in the workflow.
-When invoked in printing mode, causes orphaned dimensions to be printed
-(they are not printed by default).
-Also <samp>--retain_all_dimensions</samp>, <samp>--orphan_dimensions</samp>, and
-<samp>--rph_dmn</samp>.
-</para>
-<html endspaces=" ">
-<a name="s"></a> <!&textndash; http://nco.sf.net/nco.html#s &textndash;>
-<a name="sng_fmt"></a> <!&textndash; http://nco.sf.net/nco.html#sng_fmt &textndash;>
-<a name="string"></a> <!&textndash; http://nco.sf.net/nco.html#string &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1446"><code>-s</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1447"><code>--string</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1448"><code>--sng_fmt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1449"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1450">C language</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-s <var>format</var></itemformat></item>
-</tableterm><tableitem><para>String format for text output.
-Accepts <w>C language</w> escape sequences and <code>printf()</code> formats.
-Also <samp>--string</samp> and <samp>--sng_fmt</samp>.
-</para>
-<html endspaces=" ">
-<a name="ssh"></a> <!&textndash; http://nco.sf.net/nco.html#ssh &textndash;>
-<a name="scr"></a> <!&textndash; http://nco.sf.net/nco.html#scr &textndash;>
-<a name="secret"></a> <!&textndash; http://nco.sf.net/nco.html#secret &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1451"><code>--ssh</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1452"><code>--scr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1453"><code>--secret</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1454">hidden features</indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--secret</itemformat></item>
-</tableterm><tableitem><para>Print summary of <command>ncks</command> hidden features.
-These hidden or secret features are used mainly by developers.
-They are not supported for general use and may change at any time.
-This demonstrates conclusively that I cannot keep a secret.
-Also <samp>--ssh</samp> and <samp>--scr</samp>.
-</para>
-<html endspaces=" ">
-<a name="units"></a> <!&textndash; http://nco.sf.net/nco.html#units &textndash;>
-<a name="u"></a> <!&textndash; http://nco.sf.net/nco.html#u &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1455"><code>-u</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1456"><code>--units</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-u </itemformat></item>
-</tableterm><tableitem><para>Toggle the printing of a variable&textrsquo;s <code>units</code> attribute, if any,
-with its values.
-Also <samp>--units</samp>.
-</para>
-<html endspaces=" ">
-<a name="V"></a> <!&textndash; http://nco.sf.net/nco.html#V &textndash;>
-<a name="var_val"></a> <!&textndash; http://nco.sf.net/nco.html#var_val &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1457"><code>-V</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1458"><code>--var_val</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1459"><code>--no_dmn_var_nm</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1460"><code>--no_nm_prn</code></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-V</itemformat></item>
-</tableterm><tableitem><para>Print variable values only.
-Do not print variable and dimension names, indices, and coordinate
-values when printing arrays.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-...
-</verbatim>
-</example>
-<para>See also the <samp>-Q</samp> option, which prints variable names and indices,
-but not dimension names, indices, or coordinate values when printing
-arrays.
-Using <samp>-V</samp> is the same as specifying <samp>-Q --no_nm_prn</samp>.
-</para>
-<html endspaces=" ">
-<a name="xml"></a> <!&textndash; http://nco.sf.net/nco.html#xml &textndash;>
-<a name="ncmnl"></a> <!&textndash; http://nco.sf.net/nco.html#ncml &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1461"><code>--xml</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1462"><code>--ncml</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1463"><command>ncdump</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1464"><acronym><acronymword>XML</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1465"><acronym><acronymword>NcML</acronymword></acronym></indexterm></cindex>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">--xml, --ncml</itemformat></item>
-</tableterm><tableitem><para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.3.3 (July, 2013), <command>ncks</command> can
-print extracted metadata to screen (i.e., <code>stdout</code>) as
-<acronym><acronymword>XML</acronymword></acronym> in <acronym><acronymword>NcML</acronymword></acronym>, the netCDF Markup Language.
-<command>ncks</command> supports for <acronym><acronymword>XML</acronymword></acronym> more completely than
-of <samp>ncdump -x</samp>.
-With <command>ncks</command> one can translate entire netCDF3 and netCDF4 files
-into <acronym><acronymword>NcML</acronymword></acronym>, including metadata and data, using all
-<acronym><acronymword>NCO</acronymword></acronym>&textrsquo;s subsetting and hyperslabbing capabilities.
-Compare <command>ncks</command> &textldquo;traditional&textrdquo; with <acronym><acronymword>XML</acronymword></acronym> printing:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncks -v one ~/nco/data/in.nc
-one: type NC_FLOAT, 0 dimensions, 1 attribute, chunked? no, compressed? no, packed? no
-one size (RAM) = 1*sizeof(NC_FLOAT) = 1*4 = 4 bytes
-one attribute 0: long_name, size = 3 NC_CHAR, value = one
-
-one = 1
-
-zender at roulee:~$ ncks --xml -v one ~/nco/data/in.nc
-<?xml version="1.0" encoding="UTF-8"?>
-<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2" location="/home/zender/nco/data/in.nc">
- <variable name="one" type="float" shape="">
- <attribute name="long_name" separator="*" value="one" />
- <values>1.</values>
- </variable>
-</netcdf>
-</verbatim>
-</example>
-<para><acronym><acronymword>XML</acronymword></acronym>-mode prints variable metadata and, as of
-<acronym><acronymword>NCO</acronymword></acronym> version 4.3.7 (October, 2013), variable data and, as of
-<acronym><acronymword>NCO</acronymword></acronym> version 4.4.0 (January, 2014), hidden attributes.
-That <acronym><acronymword>ncks</acronymword></acronym> produces correct <acronym><acronymword>NcML</acronymword></acronym> translations of
-<acronym><acronymword>CDM</acronymword></acronym> files for all supported datatypes is verified by
-comparison to output from Unidata&textrsquo;s <command>toolsUI</command> Java program.
-Please let us know how to improve <acronym><acronymword>XML</acronymword></acronym>/<acronym><acronymword>NcML</acronymword></acronym>
-features.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1466"><code>--xml_no_location</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1467"><code>--xml_spr_chr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1468"><code>--xml_spr_nmr</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1469">separator</indexterm></cindex>
-<para><command>ncks</command> provides additional options to configure <acronym><acronymword>NcML</acronymword></acronym>
-output: <samp>--xml_no_location</samp>, <samp>--xml_spr_chr</samp>, and
-<samp>--xml_spr_nmr</samp>.
-Every <acronym><acronymword>NcML</acronymword></acronym> configuration option automatically triggers
-<acronym><acronymword>NcML</acronymword></acronym> printing, so that specifying <samp>--xml</samp> in addition
-to a configuration option is redundant and unnecessary.
-The <samp>--xml_no_location</samp> switch prevents output of the
-<acronym><acronymword>NcML</acronymword></acronym> <code>location</code> element.
-By default the location element is printed with a value equal to the
-location of the input dataset, e.g.,
-<code>location="/home/zender/in.nc"</code>.
-The <samp>--xml_spr_chr</samp> and <samp>--xml_spr_nmr</samp> options customize
-the strings used as <acronym><acronymword>NcML</acronymword></acronym> separators for attributes and
-variables of character-type and numeric-type, respectively.
-Their default separators are <code>*</code> and &textldquo;<code> </code>&textrdquo; (a space):
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-zender at roulee:~$ ncks --xml -d time,0,3 -v two_dmn_rec_var_sng in.nc
-...
- <values separator="*">abc*bcd*cde*def</values>
- ...
- zender at roulee:~$ ncks --xml_spr_chr=', ' -v two_dmn_rec_var_sng in.nc
-...
-<values separator=", ">abc, bcd, cde, def, efg, fgh, ghi, hij, jkl, klm</values>
-...
-zender at roulee:~$ ncks --xml -v one_dmn_rec_var in.nc
-...
-<values>1 2 3 4 5 6 7 8 9 10</values>
-...
-zender at roulee:~$ ncks --xml_spr_nmr=', ' -v one_dmn_rec_var in.nc
-...
-<values separator=", ">1, 2, 3, 4, 5, 6, 7, 8, 9, 10</values>
-...
-</verbatim>
-</example>
-<para>Separator elements for strings are a thorny issue.
-One must be sure that the separator element is not mistaken as a portion
-of the string.
-<acronym><acronymword>NCO</acronymword></acronym> attempts to produce valid <acronym><acronymword>NcML</acronymword></acronym> and supplies the
-<samp>--xml_spr_chr</samp> option to work around any difficulties.
-<acronym><acronymword>NCO</acronymword></acronym> performs precautionary checks with
-<code>strstr(<var>val</var>,<var>spr</var>)</code> to identify presence of the separator
-string (<var>spr</var>) in data (<var>val</var>) and, when it detects a match,
-automatically switches to a backup separator string (<code>*|*</code>).
-However limitations of <code>strstr()</code> may lead to false negatives
-when the separator string occurs in data beyond the first string in
-multi-dimensional <code>NC_CHAR</code> arrays.
-Hence, results may be ambiguous to NcML parsers.
-If problems arise, use <samp>--xml_spr_chr</samp> to specify a multi-character
-separator that does not appear in the string array and that does not
-include an NcML formatting characters (e.g., commas, angles, quotes).
-</para></tableitem></tableentry></table>
-
-<html endspaces=" ">
-<a name="ncattget"></a> <!&textndash; http://nco.sf.net/nco.html#ncattget &textndash;>
-<a name="nclist"></a> <!&textndash; http://nco.sf.net/nco.html#nclist &textndash;>
-<a name="ncdmnsz"></a> <!&textndash; http://nco.sf.net/nco.html#ncdmnsz &textndash;>
-<a name="ncrecsz"></a> <!&textndash; http://nco.sf.net/nco.html#ncrecsz &textndash;>
-<a name="ncmax"></a> <!&textndash; http://nco.sf.net/nco.html#ncmax &textndash;>
-<a name="ncmdn"></a> <!&textndash; http://nco.sf.net/nco.html#ncmdn &textndash;>
-<a name="ncavg"></a> <!&textndash; http://nco.sf.net/nco.html#ncavg &textndash;>
-<a name="ncrng"></a> <!&textndash; http://nco.sf.net/nco.html#ncrng &textndash;>
-<a name="ncunits"></a> <!&textndash; http://nco.sf.net/nco.html#ncunits &textndash;>
-<a name="alias"></a> <!&textndash; http://nco.sf.net/nco.html#alias &textndash;>
-<a name="filters"></a> <!&textndash; http://nco.sf.net/nco.html#filters &textndash;>
-<a name="filter"></a> <!&textndash; http://nco.sf.net/nco.html#filter &textndash;>
-<a name="flt"></a> <!&textndash; http://nco.sf.net/nco.html#flt &textndash;>
-</html>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Filters for <command>ncks</command></menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-</unnumberedsubsec>
-<node name="Filters-for-ncks" spaces=" "><nodename>Filters for <command>ncks</command></nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ncks netCDF Kitchen Sink</nodeprev><nodeup spaces=" ">ncks netCDF Kitchen Sink</nodeup></node>
-<subsection spaces=" "><sectiontitle>Filters for <command>ncks</command></sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1470"><acronym><acronymword>UNIX</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1471"><command>ncattget</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1472"><command>ncavg</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1473"><command>ncdmnsz</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1474"><command>nclist</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1475"><command>ncmax</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1476"><command>ncmdn</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1477"><command>ncmin</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1478"><command>ncrecsz</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1479"><command>ncrng</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1480"><command>ncunits</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1481"><file>.bashrc</file></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1482">filters</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1483">alias</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1484">shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1485">Bash shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1486">Csh shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1487">Sh shell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1488"><command>bash</command></indexterm></cindex>
-<para>We encourage the use of standard <acronym><acronymword>UNIX</acronymword></acronym> pipes and filters to
-narrow the verbose output of <command>ncks</command> into more precise targets.
-For example, to obtain an uncluttered listing of the variables in a file
-try
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort
-</pre></example>
-<para>A Bash user could alias the previous filter to the shell command
-<command>nclist</command> as shown below.
-More complex examples could involve command line arguments.
-For example, a user may frequently be interested in obtaining the value
-of an attribute, e.g., for textual file examination or for passing to
-another shell command.
-Say the attribute is <code>purpose</code>, the variable is <code>z</code>, and the
-file is <code>in.nc</code>.
-In this example, <command>ncks -m -v z</command> is too verbose so a robust
-<command>grep</command> and <command>cut</command> filter is desirable, such as
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort
-</pre></example>
-<para>The filters are clearly too complex to remember on-the-fly so the entire
-procedure could be implemented as a shell command or function called,
-say, <command>ncattget</command>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-</verbatim>
-</example>
-<para>The shell <command>ncattget</command> is invoked with three arugments that are,
-in order, the names of the attribute, variable, and file to examine.
-Global attributes are indicated by using a variable name of <code>global</code>.
-This definition yields the following results
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncattget purpose z in.nc
-Height stored with a monotonically increasing coordinate
-% ncattget Purpose Z in.nc
-Height stored with a monotonically increasing coordinate
-% ncattget history z in.nc
-% ncattget history global in.nc
-History global attribute.
-</pre></example>
-<para>Note that case sensitivity has been turned off for the variable and
-attribute names (and could be turned on by removing the <samp>-i</samp> switch
-to <command>grep</command>).
-Furthermore, extended regular expressions may be used for both the
-variable and attribute names.
-The next two commands illustrate this by searching for the values
-of attribute <code>purpose</code> in all variables, and then for all
-attributes of the variable <code>z</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncattget purpose .+ in.nc
-1-D latitude coordinate referred to by geodesic grid variables
-1-D longitude coordinate referred to by geodesic grid variables
-...
-% ncattget .+ Z in.nc
-Height
-Height stored with a monotonically increasing coordinate
-meter
-</pre></example>
-
-<para>Extended filters are best stored as shell commands if they are
-used frequently.
-Shell commands may be re-used when they are defined in shell
-configuration files.
-These files are usually named <file>.bashrc</file>, <file>.cshrc</file>, and
-<file>.profile</file> for the Bash, Csh, and Sh shells, respectively.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# NB: Untested on Csh, Ksh, Sh, Zsh! Send us feedback!
-# Bash shell (/bin/bash) users place these in .bashrc
-# ncattget $att_nm $var_nm $fl_nm : What attributes does variable have?
-function ncattget { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-# ncunits $att_val $fl_nm : Which variables have given units?
-function ncunits { ncks -M -m ${2} | grep -E -i " attribute [0-9]+: units.+ ${1}" | cut -f 1 -d ' ' | sort ; }
-# ncavg $var_nm $fl_nm : What is mean of variable?
-function ncavg { ncwa -y avg -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncavg $var_nm $fl_nm : What is mean of variable?
-function ncavg { ncap2 -O -C -v -s "foo=${1}.avg();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncdmnsz $dmn_nm $fl_nm : What is dimension size?
-function ncdmnsz { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-# nclist $fl_nm : What variables are in file?
-function nclist { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-# ncmax $var_nm $fl_nm : What is maximum of variable?
-function ncmax { ncwa -y max -O -C -v ${1} ${2} ~/foo.nc ; ncks -H -C -v ${1} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncmax $var_nm $fl_nm : What is maximum of variable?
-function ncmax { ncap2 -O -C -v -s "foo=${1}.max();print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncmdn $var_nm $fl_nm : What is median of variable?
-function ncmdn { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncrng $var_nm $fl_nm : What is range of variable?
-function ncrng { ncap2 -O -C -v -s "foo_min=${1}.min();foo_max=${1}.max();print(foo_min,\"%f\");print(\" to \");print(foo_max,\"%f\")" ${2} ~/foo.nc ; }
-# ncmode $var_nm $fl_nm : What is mode of variable?
-function ncmode { ncap2 -O -C -v -s "foo=gsl_stats_median_from_sorted_data(${1}.sort());print(foo)" ${2} ~/foo.nc | cut -f 3- -d ' ' ; }
-# ncrecsz $fl_nm : What is record dimension size?
-function ncrecsz { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-# Csh shell (/bin/csh) users place these in .cshrc
-ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-# Sh shell (/bin/sh) users place these in .profile
-ncattget() { ncks -M -m ${3} | grep -E -i "^${2} attribute [0-9]+: ${1}" | cut -f 11- -d ' ' | sort ; }
-ncdmnsz() { ncks -m -M ${2} | grep -E -i ": ${1}, size =" | cut -f 7 -d ' ' | uniq ; }
-nclist() { ncks -m ${1} | grep -E ': type' | cut -f 1 -d ' ' | sed 's/://' | sort ; }
-ncrecsz() { ncks -M ${1} | grep -E -i "^Record dimension:" | cut -f 8- -d ' ' ; }
-</verbatim>
-</example>
-
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncks"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncks &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>View all data in netCDF <file>in.nc</file>, printed with Fortran indexing
-conventions:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -F in.nc
-</pre></example>
-
-<para>Copy the netCDF file <file>in.nc</file> to file <file>out.nc</file>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks in.nc out.nc
-</pre></example>
-<para>Now the file <file>out.nc</file> contains all the data from <file>in.nc</file>.
-There are, however, two differences between <file>in.nc</file> and
-<file>out.nc</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1489"><code>history</code></indexterm></cindex>
-First, the <code>history</code> global attribute (<pxref label="History-Attribute"><xrefnodename>History Attribute</xrefnodename></pxref>)
-will contain the command used to create <file>out.nc</file>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1490">alphabetize output</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1491">sort alphabetically</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1492"><code>-a</code></indexterm></cindex>
-Second, the variables in <file>out.nc</file> will be defined in alphabetical
-order.
-Of course the internal storage of variable in a netCDF file should be
-transparent to the user, but there are cases when alphabetizing a file
-is useful (see description of <code>-a</code> switch).
-</para>
-<html endspaces=" ">
-<a name="xmp_att_glb_cpy"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_att_glb_cpy &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1493">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1494">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1495">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1496">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1497">extraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1498"><code>-v <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1499"><code>--variable <var>var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1500"><code>-x</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1501"><code>--exclude</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1502"><code>--xcl</code></indexterm></cindex>
-<para>Copy all global attributes (and no variables) from <file>in.nc</file> to
-<file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -A -x ~/nco/data/in.nc ~/out.nc
-</pre></example>
-<para>The <samp>-x</samp> switch tells <acronym><acronymword>NCO</acronymword></acronym> to use the complement of the extraction
-list (<pxref label="Subsetting-Files"><xrefnodename>Subsetting Files</xrefnodename></pxref>).
-Since no extraction list is explicitly specified (with <samp>-v</samp>),
-the default is to extract all variables.
-The complement of all variables is no variables.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1503"><code>-A</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1504"><code>--apn</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1505"><code>--append</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1506">appending to files</indexterm></cindex>
-Without any variables to extract, the append (<samp>-A</samp>) command
-(<pxref label="Appending-Variables"><xrefnodename>Appending Variables</xrefnodename></pxref>) has only to extract and copy
-(i.e., append) global attributes to the output file.
-</para>
-<html endspaces=" ">
-<a name="xmp_att_glb_cpy"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_att_var_cpy &textndash;>
-</html>
-<para>Copy/append metadata (not data) from variables in one file to
-variables in a second file.
-When copying/subsetting/appending files (as opposed to printing them),
-the copying of data, variable metadata, and global/group metadata are
-now turned OFF by <samp>-H</samp>, <samp>-m</samp>, and <samp>-M</samp>, respectively.
-This is the opposite sense in which these switches work when
-<emph>printing</emph> a file.
-One can use these switches to easily replace data or metadata in one
-file with data or metadata from another:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Extract naked (data-only) copies of two variables
-ncks -h -M -m -O -C -v one,three_dmn_rec_var ~/nco/data/in.nc ~/out.nc
-# Change values to be sure original values are not copied in following step
-ncap2 -O -v -s 'one*=2;three_dmn_rec_var*=0' ~/nco/data/in.nc ~/in2.nc
-# Append in2.nc metadata (not data!) to out.nc
-ncks -A -C -H -v one,three_dmn_rec_var ~/in2.nc ~/out.nc
-</pre></example>
-<para>Variables in <file>out.nc</file> now contain data (not metadata) from
-<file>in.nc</file> and metadata (not data) from <file>in2.nc</file>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1507"><code>-s</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1508"><code>--string</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1509"><code>--sng_fmt</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1510"><code>printf()</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1511"><code>\n</code> (linefeed)</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1512"><code>\t</code> (horizontal tab)</indexterm></cindex>
-<para>Print variable <code>three_dmn_var</code> from file <file>in.nc</file> with
-default notations.
-Next print <code>three_dmn_var</code> as an un-annotated text column.
-Then print <code>three_dmn_var</code> signed with very high precision.
-Finally, print <code>three_dmn_var</code> as a comma-separated list.
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-...
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -s '%f\n' -C -v three_dmn_var in.nc
-0.000000
-1.000000
-...
-23.000000
-% ncks -s '%+16.10f\n' -C -v three_dmn_var in.nc
- +0.0000000000
- +1.0000000000
-...
- +23.0000000000
-% ncks -s '%f, ' -C -v three_dmn_var in.nc
-0.000000, 1.000000, ..., 23.000000,
-</pre></example>
-<noindent></noindent>
-<para>Programmers will recognize these as the venerable <w>C language</w>
-<code>printf()</code> formatting strings.
-The second and third options are useful when pasting data into text
-files like reports or papers.
-<xref label="ncatted-netCDF-Attribute-Editor"><xrefnodename>ncatted netCDF Attribute Editor</xrefnodename></xref>, for more details on string
-formatting and special characters.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1513"><code>--no_blank</code></indexterm></cindex>
-<para>As of <acronym><acronymword>NCO</acronymword></acronym> version 4.2.2 (October, 2012), <acronym><acronymword>NCO</acronymword></acronym> prints
-missing values as blanks (i.e., the underscore character <samp>_</samp>) by
-default:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -C -H -v mss_val in.nc
-lon[0]=0 mss_val[0]=73
-lon[1]=90 mss_val[1]=_
-lon[2]=180 mss_val[2]=73
-lon[3]=270 mss_val[3]=_
-% ncks -s '%+5.1f, ' -H -C -v mss_val in.nc
-+73.0, _, +73.0, _,
-</pre></example>
-<para>To print the numeric value of the missing value instead of a blank,
-use the <samp>--no_blank</samp> option.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1514"><code>-Q</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1515"><code>--quiet</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1516"><code>-V</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1517"><code>--var_val</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1518"><code>--no_dmn_var_nm</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1519"><code>--no_nm_prn</code></indexterm></cindex>
-<para><command>ncks</command> prints in a verbose fashion by default and supplies a
-number of switches to pare-down (or even spruce-up) the output.
-The interplay of the <samp>-Q</samp>, <samp>-V</samp>, and (otherwise undocumented)
-<samp>--no_nm_prn</samp> switches yields most desired verbosities:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-% ncks -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-time[0]=1 lat[0]=-90 lon[0]=0 three_dmn_rec_var[0]=1
-% ncks -Q -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-three_dmn_rec_var[0]=1
-% ncks -V -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-% ncks -Q --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1
-% ncks --no_nm_prn -v three_dmn_rec_var -C -H ~/nco/data/in.nc
-1 -90 0 1
-</verbatim>
-</example>
-
-<para>One dimensional arrays of characters stored as netCDF variables are
-automatically printed as strings, whether or not they are
-NUL-terminated, e.g.,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -v fl_nm in.nc
-</pre></example>
-<noindent></noindent>
-<para>The <code>%c</code> formatting code is useful for printing
-multidimensional arrays of characters representing fixed length strings
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -s '%c' -v fl_nm_arr in.nc
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1520"><code>core dump</code></indexterm></cindex>
-<para>Using the <code>%s</code> format code on strings which are not NUL-terminated
-(and thus not technically strings) is likely to result in a core dump.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1521">subsetting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1522">exclusion</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1523">extraction</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1524"><acronym><acronymword>CF</acronymword></acronym> conventions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1525"><code>coordinates</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1526"><code>bounds</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1527"><code>ancillary_variables</code> attribute</indexterm></cindex>
-<para>Create netCDF <file>out.nc</file> containing all variables, and any associated
-coordinates, except variable <code>time</code>, from netCDF <file>in.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -x -v time in.nc out.nc
-</pre></example>
-<para>As a special case of this, consider how to remove a
-variable such as <code>time_bounds</code> that is identified in a
-<acronym><acronymword>CF</acronymword></acronym> Convention (<pxref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></pxref>) compliant
-<code>ancillary_variables</code>, <code>bounds</code>, or <code>coordinates</code>
-attribute.
-<acronym><acronymword>NCO</acronymword></acronym> subsetting assumes the user wants all ancillary variables,
-axes, bounds and coordinates associated with all extracted variables
-(<pxref label="Subsetting-Coordinate-Variables"><xrefnodename>Subsetting Coordinate Variables</xrefnodename></pxref>).
-Hence to exclude a <code>ancillary_variables</code>, <code>bounds</code>, or
-<code>coordinates</code> variable while retaining the &textldquo;parent&textrdquo; variable
-(here <code>time</code>), one must use the <samp>-C</samp> switch:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -C -x -v time_bounds in.nc out.nc
-</pre></example>
-<para>The <samp>-C</samp> switch tells the operator <emph>NOT</emph> to necessarily
-include all the <acronym><acronymword>CF</acronymword></acronym> ancillary variables, axes, bounds, and
-coordinates.
-Hence the output file will contain <code>time</code> and not
-<code>time_bounds</code>.
-</para>
-<para>Extract variables <code>time</code> and <code>pressure</code> from netCDF
-<file>in.nc</file>.
-If <file>out.nc</file> does not exist it will be created.
-Otherwise the you will be prompted whether to append to or to
-overwrite <file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -v time,pressure in.nc out.nc
-ncks -C -v time,pressure in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>The first version of the command creates an <file>out.nc</file> which contains
-<code>time</code>, <code>pressure</code>, and any coordinate variables associated
-with <var>pressure</var>.
-The <file>out.nc</file> from the second version is guaranteed to contain only
-two variables <code>time</code> and <code>pressure</code>.
-</para>
-<para>Create netCDF <file>out.nc</file> containing all variables from file
-<file>in.nc</file>.
-Restrict the dimensions of these variables to a hyperslab.
-Print (with <code>-H</code>) the hyperslabs to the screen for good measure.
-The specified hyperslab is: the fifth value in dimension <code>time</code>;
-the
-half-open range <math><var>lat</var> > 0.</math> in coordinate <code>lat</code>; the
-half-open range <math><var>lon</var> < 330.</math> in coordinate <code>lon</code>; the
-closed interval <math>0.3 < <var>band</var> < 0.5</math> in coordinate <code>band</code>;
-and cross-section closest to 1000.&noeos; in coordinate <code>lev</code>.
-Note that limits applied to coordinate values are specified with a
-decimal point, and limits applied to dimension indices do not have a
-decimal point <xref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></xref>.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -H -d time,5 -d lat,,0.0 -d lon,330.0, -d band,0.3,0.5
--d lev,1000.0 in.nc out.nc
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1528">wrapped coordinates</indexterm></cindex>
-<para>Assume the domain of the monotonically increasing longitude coordinate
-<code>lon</code> is <math>0 < <var>lon</var> < 360</math>.
-Here, <code>lon</code> is an example of a wrapped coordinate.
-<command>ncks</command> will extract a hyperslab which crosses the Greenwich
-meridian simply by specifying the westernmost longitude as <var>min</var> and
-the easternmost longitude as <var>max</var>, as follows:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -d lon,260.0,45.0 in.nc out.nc
-</pre></example>
-<para>For more details <xref label="Wrapped-Coordinates"><xrefnodename>Wrapped Coordinates</xrefnodename></xref>.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncpdq"></a> <!&textndash; http://nco.sf.net/nco.html#ncpdq &textndash;>
-<a name="ncpack"></a> <!&textndash; http://nco.sf.net/nco.html#ncpack &textndash;>
-<a name="ncunpack"></a> <!&textndash; http://nco.sf.net/nco.html#ncunpack &textndash;>
-</html>
-</subsection>
-</section>
-<node name="ncpdq-netCDF-Permute-Dimensions-Quickly" spaces=" "><nodename>ncpdq netCDF Permute Dimensions Quickly</nodename><nodenext spaces=" ">ncra netCDF Record Averager</nodenext><nodeprev spaces=" ">ncks netCDF Kitchen Sink</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncpdq</command> netCDF Permute Dimensions Quickly</sectiontitle>
-<findex index="fn" spaces=" "><indexterm index="fn" number="35" mergedindex="cp">ncpdq</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="36" mergedindex="cp">ncpack</indexterm></findex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="37" mergedindex="cp">ncunpack</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1529">reshape variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1530">permute dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1531">reverse dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1532">re-order dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1533">re-dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1534">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1535">unpacking</indexterm></cindex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncpdq [-3] [-4] [-6] [-7] [-A] [-a [-]<var>dim</var>[,&dots;]] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]]
-[-F] [-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M <var>pck_map</var>] [--mrd] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-P <var>pck_plc</var>] [-p <var>path</var>] [--ppc ...]
-[-R] [-r] [--ram_all] [-t <var>thr_nbr</var>] [-U] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x]
-<var>input-file</var> [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncpdq</command> performs one (not both) of two distinct functions:
-packing or dimension permutation.
-<command>ncpdq</command> is optimized to perform these actions in a parallel
-fashion with a minimum of time and memory.
-The <dfn>pdq</dfn> may stand for &textldquo;Permute Dimensions Quickly&textrdquo;,
-&textldquo;Pack Data Quietly&textrdquo;, &textldquo;Pillory Dan Quayle&textrdquo;, or other silly uses.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1536"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1537"><code>scale_factor</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1538"><command>ncap2</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1539">packing policy</indexterm></cindex>
-<unnumberedsubsec spaces=" "><sectiontitle>Packing and Unpacking Functions</sectiontitle>
-<para>The <command>ncpdq</command> packing (and unpacking) algorithms are described
-in <ref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></ref>, and are also implemented in
-<command>ncap2</command>.
-<command>ncpdq</command> extends the functionality of these algorithms by
-providing high level control of the <dfn>packing policy</dfn> so that
-users can consistently pack (and unpack) entire files with one command.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1540"><var>pck_plc</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1541"><code>-P <var>pck_plc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1542"><code>--pck_plc <var>pck_plc</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1543"><code>--pack_policy <var>pck_plc</var></code></indexterm></cindex>
-The user specifies the desired packing policy with the <samp>-P</samp> switch
-(or its long option equivalents, <samp>--pck_plc</samp> and
-<samp>--pack_policy</samp>) and its <var>pck_plc</var> argument.
-Four packing policies are currently implemented:&linebreak;
-</para><table commandarg="dfn" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Packing (and Re-Packing) Variables [<emph>default</emph>]</itemformat></item>
-</tableterm><tableitem><para>Definition: Pack unpacked variables, re-pack packed variables&linebreak;
-Alternate invocation: <code>ncpack</code>&linebreak;
-<var>pck_plc</var> key values: <samp>all_new</samp>, <samp>pck_all_new_att</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Packing (and not Re-Packing) Variables</itemformat></item>
-</tableterm><tableitem><para>Definition: Pack unpacked variables, copy packed variables&linebreak;
-Alternate invocation: none&linebreak;
-<var>pck_plc</var> key values: <samp>all_xst</samp>, <samp>pck_all_xst_att</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Re-Packing Variables</itemformat></item>
-</tableterm><tableitem><para>Definition: Re-pack packed variables, copy unpacked variables&linebreak;
-Alternate invocation: none&linebreak;
-<var>pck_plc</var> key values: <samp>xst_new</samp>, <samp>pck_xst_new_att</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Unpacking</itemformat></item>
-</tableterm><tableitem><para>Definition: Unpack packed variables, copy unpacked variables&linebreak;
-Alternate invocation: <code>ncunpack</code>&linebreak;
-<var>pck_plc</var> key values: <samp>upk</samp>, <samp>unpack</samp>, <samp>pck_upk</samp>&linebreak;
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>Equivalent key values are fully interchangeable.
-Multiple equivalent options are provided to satisfy disparate needs
-and tastes of <acronym><acronymword>NCO</acronymword></acronym> users working with scripts and from the
-command line.
-</para>
-<para>Regardless of the packing policy selected, <command>ncpdq</command>
-no longer (as of <acronym><acronymword>NCO</acronymword></acronym> version 4.0.4 in October, 2010)
-packs coordinate variables, or the special variables, weights,
-and other grid properties described in <ref label="CF-Conventions"><xrefnodename>CF Conventions</xrefnodename></ref>.
-Prior <command>ncpdq</command> versions treated coordinate variables and
-grid properties no differently from other variables.
-However, coordinate variables are one-dimensional, so packing saves
-little space on large files, and the resulting files are difficult for
-humans to read.
-<command>ncpdq</command> will, of course, <emph>unpack</emph> coordinate variables and
-weights, for example, in case some other, non-<acronym><acronymword>NCO</acronymword></acronym> software
-packed them in the first place.
-</para>
-<para>Concurrently, Gaussian and area weights and other grid properties are
-often used to derive fields in re-inflated (unpacked) files, so packing
-such grid properties causes a considerable loss of precision in
-downstream data processing.
-If users express strong wishes to pack grid properties, we will
-implement new packing policies.
-An immediate workaround for those needing to pack grid properties
-now, is to use the <command>ncap2</command> packing functions or to rename the
-grid properties prior to calling <command>ncpdq</command>.
-We welcome your feedback.
-</para>
-<para>To reduce required memorization of these complex policy switches,
-<command>ncpdq</command> may also be invoked via a synonym or with switches
-that imply a particular policy.
-<command>ncpack</command> is a synonym for <command>ncpdq</command> and behaves the same
-in all respects.
-Both <command>ncpdq</command> and <command>ncpack</command> assume a default packing
-policy request of <samp>all_new</samp>.
-Hence <command>ncpack</command> may be invoked without any <samp>-P</samp> switch,
-unlike <command>ncpdq</command>.
-Similarly, <command>ncunpack</command> is a synonym for <command>ncpdq</command>
-except that <command>ncpack</command> implicitly assumes a request to unpack,
-i.e., <samp>-P pck_upk</samp>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1544"><code>-U</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1545"><code>--upk</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1546"><code>--unpack</code></indexterm></cindex>
-Finally, the <command>ncpdq</command> <samp>-U</samp> switch (or its long option
-equivalents, <samp>--upk</samp> and <samp>--unpack</samp>) requires no argument.
-It simply requests unpacking.
-</para>
-<para>Given the menagerie of synonyms, equivalent options, and implied
-options, a short list of some equivalent commands is appropriate.
-The following commands are equivalent for packing:
-<code>ncpdq -P all_new</code>, <code>ncpdq --pck_plc=all_new</code>, and
-<code>ncpack</code>.
-The following commands are equivalent for unpacking:
-<code>ncpdq -P upk</code>, <code>ncpdq -U</code>, <code>ncpdq --pck_plc=unpack</code>,
-and <code>ncunpack</code>.
-Equivalent commands for other packing policies, e.g., <samp>all_xst</samp>,
-follow by analogy.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1547"><command>alias</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1548"><command>ln -s</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1549">symbolic links</indexterm></cindex>
-Note that <command>ncpdq</command> synonyms are subject to the same constraints
-and recommendations discussed in the secion on <command>ncbo</command> synonyms
-(<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>).
-That is, symbolic links must exist from the synonym to <command>ncpdq</command>,
-or else the user must define an <command>alias</command>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1550">packing map</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1551"><var>pck_map</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1552"><code>-M <var>pck_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1553"><code>--pck_map <var>pck_map</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1554"><code>--map <var>pck_map</var></code></indexterm></cindex>
-<para>The <command>ncpdq</command> packing algorithms must know to which type
-particular types of input variables are to be packed.
-The correspondence between the input variable type and the output,
-packed type, is called the <dfn>packing map</dfn>.
-The user specifies the desired packing map with the <samp>-M</samp> switch
-(or its long option equivalents, <samp>--pck_map</samp> and
-<samp>--map</samp>) and its <var>pck_map</var> argument.
-Five packing maps are currently implemented:&linebreak;
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1555"><samp>hgh_sht</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1556"><samp>hgh_byt</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1557"><samp>flt_sht</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1558"><samp>flt_byt</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1559"><samp>nxt_lsr</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1560"><code>NC_DOUBLE</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1561"><code>NC_FLOAT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1562"><code>NC_INT64</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1563"><code>NC_UINT64</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1564"><code>NC_INT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1565"><code>NC_UINT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1566"><code>NC_SHORT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1567"><code>NC_USHORT</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1568"><code>NC_CHAR</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1569"><code>NC_BYTE</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1570"><code>NC_UBYTE</code></indexterm></cindex>
-</para><table commandarg="dfn" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack Floating Precisions to <code>NC_SHORT</code> [<emph>default</emph>]</itemformat></item>
-</tableterm><tableitem><para>Definition: Pack floating precision types to <code>NC_SHORT</code>&linebreak;
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>] to <code>NC_SHORT</code>&linebreak;
-Types copied instead of packed: [<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]&linebreak;
-<var>pck_map</var> key values: <samp>flt_sht</samp>, <samp>pck_map_flt_sht</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack Floating Precisions to <code>NC_BYTE</code></itemformat></item>
-</tableterm><tableitem><para>Definition: Pack floating precision types to <code>NC_BYTE</code>&linebreak;
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>] to <code>NC_BYTE</code>&linebreak;
-Types copied instead of packed: [<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]&linebreak;
-<var>pck_map</var> key values: <samp>flt_byt</samp>, <samp>pck_map_flt_byt</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack Higher Precisions to <code>NC_SHORT</code></itemformat></item>
-</tableterm><tableitem><para>Definition: Pack higher precision types to <code>NC_SHORT</code>&linebreak;
-Map:
-Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>] to <code>NC_SHORT</code>&linebreak;
-Types copied instead of packed: [<code>NC_SHORT</code>,<code>NC_USHORT</code>,<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]&linebreak;
-<var>pck_map</var> key values: <samp>hgh_sht</samp>, <samp>pck_map_hgh_sht</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack Higher Precisions to <code>NC_BYTE</code></itemformat></item>
-</tableterm><tableitem><para>Definition: Pack higher precision types to <code>NC_BYTE</code>&linebreak;
-Map:
-Pack [<code>NC_DOUBLE</code>,<code>NC_FLOAT</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>,<code>NC_INT</code>,<code>NC_UINT</code>,<code>NC_SHORT</code>,<code>NC_USHORT</code>] to <code>NC_BYTE</code>&linebreak;
-Types copied instead of packed: [<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]&linebreak;
-<var>pck_map</var> key values: <samp>hgh_byt</samp>, <samp>pck_map_hgh_byt</samp>&linebreak;
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="dfn">Pack to Next Lesser Precision</itemformat></item>
-</tableterm><tableitem><para>Definition: Pack each type to type of next lesser size&linebreak;
-Map: Pack [<code>NC_DOUBLE</code>,<code>NC_INT64</code>,<code>NC_UINT64</code>], to <code>NC_INT</code>.
-Pack [<code>NC_FLOAT</code>,<code>NC_INT</code>,<code>NC_UINT</code>] to <code>NC_SHORT</code>.
-Pack [<code>NC_SHORT</code>,<code>NC_USHORT</code>] to <code>NC_BYTE</code>.&linebreak;
-Types copied instead of packed: [<code>NC_CHAR</code>,<code>NC_BYTE</code>,<code>NC_UBYTE</code>]&linebreak;
-<var>pck_map</var> key values: <samp>nxt_lsr</samp>, <samp>pck_map_nxt_lsr</samp>&linebreak;
-</para></tableitem></tableentry></table>
-<noindent></noindent>
-<para>The default <samp>all_new</samp> packing policy with the default
-<samp>flt_sht</samp> packing map reduces the typical <code>NC_FLOAT</code>-dominated
-file size by <w>about 50%.</w>
-<samp>flt_byt</samp> packing reduces an <code>NC_DOUBLE</code>-dominated file by
-<w>about 87%.</w>
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1571"><var>_FillValue</var></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1572"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1573"><code>NUL</code></indexterm></cindex>
-<para>The netCDF packing algorithm (<pxref label="Methods-and-functions"><xrefnodename>Methods and functions</xrefnodename></pxref>) is
-lossy&textmdash;once packed, the exact original data cannot be recovered without
-a full backup.
-Hence users should be aware of some packing caveats:
-First, the interaction of packing and data equal to the
-<var>_FillValue</var> is complex.
-Test the <code>_FillValue</code> behavior by performing a pack/unpack cycle
-to ensure data that are missing <emph>stay</emph> missing and data that are
-not misssing do not join the Air National Guard and go missing.
-This may lead you to elect a new <var>_FillValue</var>.
-Second, <code>ncpdq</code> actually allows packing into <code>NC_CHAR</code> (with,
-e.g., <samp>flt_chr</samp>).
-However, the intrinsic conversion of <code>signed char</code> to higher
-precision types is tricky for values equal to zero, i.e., for
-<code>NUL</code>.
-Hence packing to <code>NC_CHAR</code> is not documented or advertised.
-Pack into <code>NC_BYTE</code> (with, e.g., <samp>flt_byt</samp>) instead.
-</para>
-<html endspaces=" ">
-<a name="rvr"></a> <!&textndash; http://nco.sf.net/nco.html#rvr &textndash;>
-</html>
-</unnumberedsubsec>
-<unnumberedsubsec spaces=" "><sectiontitle>Dimension Permutation</sectiontitle>
-<para><command>ncpdq</command> re-shapes variables in <var>input-file</var> by re-ordering
-and/or reversing dimensions specified in the dimension list.
-The dimension list is a whitespace-free, comma separated list of
-dimension names, optionally prefixed by negative signs, that follows the
-<samp>-a</samp> (or long options <samp>--arrange</samp>, <samp>--permute</samp>,
-<samp>--re-order</samp>, or <samp>--rdr</samp>) switch.
-To re-order variables by a subset of their dimensions, specify
-these dimensions in a comma-separated list following <samp>-a</samp>, e.g.,
-<samp>-a lon,lat</samp>.
-To reverse a dimension, prefix its name with a negative sign in the
-dimension list, e.g., <samp>-a -lat</samp>.
-Re-ordering and reversal may be performed simultaneously, e.g.,
-<samp>-a lon,-lat,time,-lev</samp>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1574">record dimension</indexterm></cindex>
-<para>Users may specify any permutation of dimensions, including
-permutations which change the record dimension identity.
-The record dimension is re-ordered like any other dimension.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1575">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1576">record dimension</indexterm></cindex>
-This unique <command>ncpdq</command> capability makes it possible to concatenate
-files along any dimension.
-See <ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref> for a detailed example.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1577">record variable</indexterm></cindex>
-The record dimension is always the most slowly varying dimension in a
-record variable (<pxref label="C-and-Fortran-Index-Conventions"><xrefnodename>C and Fortran Index Conventions</xrefnodename></pxref>).
-The specified re-ordering fails if it requires creating more than
-one record dimension amongst all the output variables
-<footnote><para>This limitation, imposed by the netCDF storage layer,
-may be relaxed in the future with netCDF4.</para></footnote>.
-</para>
-<para>Two special cases of dimension re-ordering and reversal deserve special
-mention.
-First, it may be desirable to completely reverse the storage order of a
-variable.
-To do this, include all the variable&textrsquo;s dimensions in the dimension
-re-order list in their original order, and prefix each dimension name
-with the negative sign.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1578">transpose</indexterm></cindex>
-Second, it may useful to transpose a variable&textrsquo;s storage order, e.g.,
-<w>from C</w> to Fortran data storage order
-(<pxref label="C-and-Fortran-Index-Conventions"><xrefnodename>C and Fortran Index Conventions</xrefnodename></pxref>).
-To do this, include all the variable&textrsquo;s dimensions in the dimension
-re-order list in reversed order.
-Explicit examples of these two techniques appear below.
-</para>
-<tex endspaces=" ">
-NB: fxm ncpdq documentation will evolve through Fall 2004.
-I will upload updates to documentation linked to by the NCO homepage.
-ncpdq is a powerful operator, and
-I am unfamiliar with the terminology needed to describe what ncpdq does.
-Sequences, sets, sheesh!
-I just know that it does &textldquo;The right thing&textrdquo; according to my gut feelings.
-Now do you feel more comfortable using it?
-
-Let $\dmnvct(\xxx)$ represent the dimensionality of the variable $\xxx$.
-Dimensionality describes the order and sizes of dimensions.
-If $\xxx$ has rank $\dmnnbr$, then we may write $\dmnvct(\xxx)$ as the
-$\dmnnbr$-element vector
-$$
-\dmnvct(\xxx) = [ \dmn_{1}, \dmn_{2}, \dmn_{3}, \ldots,
-\dmn_{\dmnidx-1}, \dmn_{\dmnidx}, \dmn_{\dmnidx+1},
-\ldots, \dmn_{\dmnnbr-2}, \dmn_{\dmnnbr-1}, \dmn_{\dmnnbr} ]
-$$
-where $\dmn_{\dmnidx}$ is the size of the $\dmnidx$&textrsquo;th dimension.
-
-The dimension re-order list specified with <samp>-a</samp> is the
-$\rdrnbr$-element vector
-$$
-\rdrvct = [ \rdr_{1}, \rdr_{2}, \rdr_{3}, \ldots,
-\rdr_{\rdridx-1}, \rdr_{\rdridx}, \rdr_{\rdridx+1},
-\ldots, \rdr_{\rdrnbr-2}, \rdr_{\rdrnbr-1}, \rdr_{\rdrnbr} ]
-$$
-There need be no relation between $\dmnnbr$ and $\rdrnbr$.
-Let the $\shrnbr$-element vector $\shrvct$ be the intersection
-(i.e., the ordered set of unique shared dimensions) of $\dmnvct$ and
-$\rdrvct$
-Then
-$$
-\eqalign{{\shrvct} &= \rdrvct \cap \dmnvct \cr
-&= [ \shr_{1}, \shr_{2}, \shr_{3}, \ldots,
-\shr_{\shridx-1}, \shr_{\shridx}, \shr_{\shridx+1},
-\ldots, \shr_{\shrnbr-2}, \shr_{\shrnbr-1}, \shr_{\shrnbr} ]}
-$$
-$\shrvct$ is empty if $\rdrvct \notin \dmnvct$.
-
-Re-ordering (or re-shaping) a variable means mapping the input state
-with dimensionality $\dmnvct(\xxx)$ to the output state with
-dimensionality $\dmnvctprm(\xxxprm)$.
-In practice, mapping occurs in three logically distinct steps.
-First, we tranlate the user input to a one-to-one mapping $\mpp$
-between input and output dimensions,
-$\dmnvct \mapsto \dmnvctprm$.
-This tentative map is final unless external constraints (typically
-netCDF restrictions) impose themselves.
-Second, we check and, if necessary, refine the tentative mapping so that
-the re-shaped variables will co-exist in the same file without violating
-netCDF-imposed storage restrictions.
-This refined map specifies the final (output) dimensionality.
-Third, we translate the output dimensionality into one-dimensional
-memory offsets for each datum according to the <w>C language</w> convention
-for multi-dimensional array storage.
-Dimension reversal changes the ordering of data, though not the
-rank or dimensionality, and so is part of the third step.
-
-Dimensions $\rdr$ disjoint from $\dmnvct$ play no role in re-ordering.
-The first step taken to re-order a variable is to determine $\shrvct$.
-$\rdrvct$ is constant for all variables, whereas $\dmnvct$, and hence
-$\shrvct$, is variable-specific.
-$\shrvct$ is empty if $\rdrvct \notin \dmnvct$.
-This may be the case for some extracted variables.
-The user may explicitly specify the one-to-one mapping of input
-to output dimension order by supplying (with <samp>-a</samp>) a re-order list
-$\rdrvct$ such that $\shrnbr = \dmnnbr$.
-In this case $\dmnsubnnnprm = \shrsubnnn$.
-The degenerate case occurs when $\dmnvct = \shrvct$.
-This produces the identity mapping $\dmnsubnnnprm = \dmnsubnnn$.
-
-The mapping of input to output dimension order is more complex
-when $\shrnbr \ne \dmnnbr$.
-In this case $\dmnsubnnnprm = \dmnsubnnn$ for the $\dmnnbr-\shrnbr$
-dimensions $\dmnsubnnnprm \notin \shrvct$.
-For the $\shrnbr$ dimensions $\dmnsubnnnprm \in \shrvct$,
-$\dmnsubnnnprm = \shrsubsss$.
-</tex>
-
-<!-- c fxm: discuss netCDF-imposed constraints here -->
-
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncpdq"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncpdq &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Pack and unpack all variables in file <file>in.nc</file> and store the results
-in <file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncpdq in.nc out.nc # Same as ncpack in.nc out.nc
-ncpdq -P all_new -M flt_sht in.nc out.nc # Defaults
-ncpdq -P all_xst in.nc out.nc
-ncpdq -P upk in.nc out.nc # Same as ncunpack in.nc out.nc
-ncpdq -U in.nc out.nc # Same as ncunpack in.nc out.nc
-</pre></example>
-<para>The first two commands pack any unpacked variable in the input file.
-They also unpack and then re-pack every packed variable.
-The third command only packs unpacked variables in the input file.
-If a variable is already packed, the third command copies it unchanged
-to the output file.
-The fourth and fifth commands unpack any packed variables.
-If a variable is not packed, the third command copies it unchanged.
-</para>
-<para>The previous examples all utilized the default packing map.
-Suppose you wish to archive all data that are currently unpacked
-into a form which only preserves 256 distinct values.
-Then you could specify the packing map <var>pck_map</var> as <samp>hgh_byt</samp>
-and the packing policy <var>pck_plc</var> as <samp>all_xst</samp>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncpdq -P all_xst -M hgh_byt in.nc out.nc
-</pre></example>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1579">appending variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1580"><samp>-A</samp></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1581"><samp>-v</samp></indexterm></cindex>
-<para>Many different packing maps may be used to construct a given file
-by performing the packing on subsets of variables (e.g., with <samp>-v</samp>)
-and using the append feature with <samp>-A</samp> (<pxref label="Appending-Variables"><xrefnodename>Appending Variables</xrefnodename></pxref>).
-</para>
-<para>Users may wish to unpack data packed with the <acronym><acronymword>HDF</acronymword></acronym> convention,
-and then re-pack it with the netCDF convention so that all their
-datasets use the same packing convention prior to intercomparison.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1582"><command>ncl_convert2nc</command></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1583"><acronym><acronymword>NCL</acronymword></acronym></indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve"># One-step procedure: For NCO 4.4.0+, netCDF 4.3.1+
-# 1. Convert, unpack, and repack HDF file into netCDF file
-ncpdq --hdf_upk -P xst_new modis.hdf modis.nc # HDF4 files
-ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5 files
-
-# One-step procedure: For NCO 4.3.7--4.3.9
-# 1. Convert, unpack, and repack HDF file into netCDF file
-ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc # HDF4
-ncpdq --hdf_upk -P xst_new modis.h5 modis.nc # HDF5
-
-# Two-step procedure: For NCO 4.3.6 and earlier
-# 1. Convert HDF file to netCDF file
-ncl_convert2nc modis.hdf
-# 2. Unpack using HDF convention and repack using netCDF convention
-ncpdq --hdf_upk -P xst_new modis.nc modis.nc
-</pre></example>
-<para><acronym><acronymword>NCO</acronymword></acronym> now
-<footnote spaces="\n"><para>Prior to <acronym><acronymword>NCO</acronymword></acronym> 4.4.0 and netCDF 4.3.1 (January, 2014),
-<acronym><acronymword>NCO</acronymword></acronym> requires the <samp>--hdf4</samp> switch to correctly read
-HDF4 input files.
-For example, <samp>ncpdq --hdf4 --hdf_upk -P xst_new modis.hdf modis.nc</samp>.
-That switch is now obsolete, though harmless for backwards compatibility.
-Prior to version 4.3.7 (October, 2013), <acronym><acronymword>NCO</acronymword></acronym> lacked the
-software necessary to workaround netCDF library flaws handling
-<acronym><acronymword>HDF4</acronymword></acronym> files, and thus <acronym><acronymword>NCO</acronymword></acronym> failed to convert
-<acronym><acronymword>HDF4</acronymword></acronym> files to netCDF files.
-In those cases, use the <command>ncl_convert2nc</command> command distributed
-with <acronym><acronymword>NCL</acronymword></acronym> to convert <acronym><acronymword>HDF4</acronymword></acronym> files to netCDF.</para></footnote>
-automatically detects <acronym><acronymword>HDF4</acronymword></acronym> files.
-In this case it produces an output file <file>modis.nc</file> which preserves
-the <acronym><acronymword>HDF</acronymword></acronym> packing used in the input file.
-The <command>ncpdq</command> command first unpacks all packed variables using the
-<acronym><acronymword>HDF</acronymword></acronym> unpacking algorithm (as specified by <samp>--hdf_upk</samp>),
-and then repacks those same variables using the netCDF algorithm
-(because that is the only algorithm <acronym><acronymword>NCO</acronymword></acronym> packs with).
-As described above the <samp>--P xst_new</samp> packing policy only repacks
-variables that are already packed.
-Not-packed variables are copied directly without loss of precision
-<footnote><para><command>ncpdq</command> does not support packing data using the
-<acronym><acronymword>HDF</acronymword></acronym> convention.
-Although it is now straightforward to support this, we think it might
-sow more confusion than it reaps.
-Let us know if you disagree and would like <acronym><acronymword>NCO</acronymword></acronym> to support
-packing data with <acronym><acronymword>HDF</acronymword></acronym> algorithm.</para></footnote>.
-</para>
-<para>Re-order file <file>in.nc</file> so that the dimension <code>lon</code> always
-precedes the dimension <code>lat</code> and store the results in
-<file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncpdq -a lon,lat in.nc out.nc
-ncpdq -v three_dmn_var -a lon,lat in.nc out.nc
-</pre></example>
-<para>The first command re-orders every variable in the input file.
-The second command extracts and re-orders only the variable
-<code>three_dmn_var</code>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1584">reverse dimensions</indexterm></cindex>
-<para>Suppose the dimension <code>lat</code> represents latitude and monotonically
-increases increases from south to north.
-Reversing the <code>lat</code> dimension means re-ordering the data so that
-latitude values decrease monotonically from north to south.
-Accomplish this with
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncpdq -a -lat in.nc out.nc
-% ncks -C -v lat in.nc
-lat[0]=-90
-lat[1]=90
-% ncks -C -v lat out.nc
-lat[0]=90
-lat[1]=-90
-</pre></example>
-<para>This operation reversed the latitude dimension of all variables.
-Whitespace immediately preceding the negative sign that specifies
-dimension reversal may be dangerous.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1585">long options</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1586">quotes</indexterm></cindex>
-Quotes and long options can help protect negative signs that should
-indicate dimension reversal from being interpreted by the shell as
-dashes that indicate new command line switches.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncpdq -a -lat in.nc out.nc # Dangerous? Whitespace before "-lat"
-ncpdq -a '-lat' in.nc out.nc # OK. Quotes protect "-" in "-lat"
-ncpdq -a lon,-lat in.nc out.nc # OK. No whitespace before "-"
-ncpdq --rdr=-lat in.nc out.nc # Preferred. Uses "=" not whitespace
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1587">reverse dimensions</indexterm></cindex>
-<para>To create the mathematical transpose of a variable, place all its
-dimensions in the dimension re-order list in reversed order.
-This example creates the transpose of <code>three_dmn_var</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncpdq -a lon,lev,lat -v three_dmn_var in.nc out.nc
-% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lon[0]=0 lev[0]=100 lat[0]=-90 three_dmn_var[0]=0
-lon[0]=0 lev[0]=100 lat[1]=90 three_dmn_var[1]=12
-lon[0]=0 lev[1]=500 lat[0]=-90 three_dmn_var[2]=4
-...
-lon[3]=270 lev[1]=500 lat[1]=90 three_dmn_var[21]=19
-lon[3]=270 lev[2]=1000 lat[0]=-90 three_dmn_var[22]=11
-lon[3]=270 lev[2]=1000 lat[1]=90 three_dmn_var[23]=23
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1588">reverse data</indexterm></cindex>
-<para>To completely reverse the storage order of a variable, include
-all its dimensions in the re-order list, each prefixed by a negative
-sign.
-This example reverses the storage order of <code>three_dmn_var</code>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncpdq -a -lat,-lev,-lon -v three_dmn_var in.nc out.nc
-% ncks -C -v three_dmn_var in.nc
-lat[0]=-90 lev[0]=100 lon[0]=0 three_dmn_var[0]=0
-lat[0]=-90 lev[0]=100 lon[1]=90 three_dmn_var[1]=1
-lat[0]=-90 lev[0]=100 lon[2]=180 three_dmn_var[2]=2
-...
-lat[1]=90 lev[2]=1000 lon[1]=90 three_dmn_var[21]=21
-lat[1]=90 lev[2]=1000 lon[2]=180 three_dmn_var[22]=22
-lat[1]=90 lev[2]=1000 lon[3]=270 three_dmn_var[23]=23
-% ncks -C -v three_dmn_var out.nc
-lat[0]=90 lev[0]=1000 lon[0]=270 three_dmn_var[0]=23
-lat[0]=90 lev[0]=1000 lon[1]=180 three_dmn_var[1]=22
-lat[0]=90 lev[0]=1000 lon[2]=90 three_dmn_var[2]=21
-...
-lat[1]=-90 lev[2]=100 lon[1]=180 three_dmn_var[21]=2
-lat[1]=-90 lev[2]=100 lon[2]=90 three_dmn_var[22]=1
-lat[1]=-90 lev[2]=100 lon[3]=0 three_dmn_var[23]=0
-</pre></example>
-
-<html endspaces=" ">
-<a name="dmn_rcd_mk"></a> <!&textndash; http://nco.sf.net/nco.html#dmn_rcd_mk &textndash;>
-<a name="mk_rcd_dmn"></a> <!&textndash; http://nco.sf.net/nco.html#mk_rcd_dmn &textndash;>
-</html>
-<para>Creating a record dimension named, e.g., <code>time</code>, in a file which
-has no existing record dimension is simple with <command>ncecat</command>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"
-</pre></example>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1589">record dimension</indexterm></cindex>
-<para>Now consider a file with all dimensions, including <code>time</code>, fixed
-(non-record).
-Suppose the user wishes to convert <code>time</code> from a fixed dimension to
-a record dimension.
-This may be useful, for example, when the user wishes to append
-additional time slices to the data.
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.0.1 (April, 2010) the preferred method for
-doing this is with <command>ncks</command>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dimension
-</pre></example>
-
-<para>Prior to 4.0.1, the procedure to change an existing fixed dimension into
-a record dimension required three separate commands,
-<command>ncecat</command> followed by <command>ncpdq</command>, and then <command>ncwa</command>.
-The recommended method is now to use <samp>ncks --fix_rec_dmn</samp>, yet it
-is still instructive to present the original procedure, as it shows how
-multiple operators can achieve the same ends by different means:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1590">degenerate dimension</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncecat -O in.nc out.nc # Add degenerate record dimension named "record"
-ncpdq -O -a time,record out.nc out.nc # Switch "record" and "time"
-ncwa -O -a record out.nc out.nc # Remove (degenerate) "record"
-</pre></example>
-<noindent></noindent>
-<para>The first step creates a degenerate (size equals one) record dimension
-named (by default) <code>record</code>.
-The second step swaps the ordering of the dimensions named <code>time</code>
-and <code>record</code>.
-Since <code>time</code> now occupies the position of the first (least rapidly
-varying) dimension, it becomes the record dimension.
-The dimension named <code>record</code> is no longer a record dimension.
-The third step averages over this degenerate <code>record</code> dimension.
-Averaging over a degenerate dimension does not alter the data.
-The ordering of other dimensions in the file (<code>lat</code>, <code>lon</code>,
-etc.) is immaterial to this procedure.
-See <ref label="ncecat-netCDF-Ensemble-Concatenator"><xrefnodename>ncecat netCDF Ensemble Concatenator</xrefnodename></ref> and
-<ref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></ref> for other methods of
-changing variable dimensionality, including the record dimension.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncra"></a> <!&textndash; http://nco.sf.net/nco.html#ncra &textndash;>
-</html>
-</unnumberedsubsec>
-</section>
-<node name="ncra-netCDF-Record-Averager" spaces=" "><nodename>ncra netCDF Record Averager</nodename><nodenext spaces=" ">ncrcat netCDF Record Concatenator</nodenext><nodeprev spaces=" ">ncpdq netCDF Permute Dimensions Quickly</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncra</command> netCDF Record Averager</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1591">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1592">record average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1593">record dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1594">running average</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="38" mergedindex="cp">ncra</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdf] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--mro] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [--rth_dbl|flt]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x] [-y <var>op_typ</var>]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncra</command> averages record variables across an arbitrary number of
-<var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1595">degenerate dimension</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1596">record dimension</indexterm></cindex>
-The record dimension is, by default, retained as a degenerate
-<w>(size 1)</w> dimension in the output variables.
-<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1597">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1598">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1599"><code>stdin</code></indexterm></cindex>
-As a multi-file operator, <command>ncra</command> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-</para>
-<para>Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1600">hyperslab</indexterm></cindex>
-Hyperslabs of the record dimension which include more than one file
-work correctly.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1601">stride</indexterm></cindex>
-<command>ncra</command> supports the <var>stride</var> argument to the <samp>-d</samp>
-hyperslab option (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>) for the record dimension only,
-<var>stride</var> is not supported for non-record dimensions.
-</para>
-<para><command>ncra</command> weights each record (e.g., time slice) in the
-<var>input-files</var> equally.
-<command>ncra</command> does not attempt to see if, say, the <code>time</code>
-coordinate is irregularly spaced and thus would require a weighted
-average in order to be a true time average.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1602">operation types</indexterm></cindex>
-<command>ncra</command> <emph>always averages</emph> coordinate variables regardless of
-the arithmetic operation type performed on the non-coordinate variables.
-(<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncra"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncra &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Average files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
-along the record dimension, and store the results in <file>8589.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1603">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1604"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1605">Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1606"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncra 8[56789].nc 8589.nc
-ncra -n 5,2,1 85.nc 8589.nc
-</pre></example>
-<para>These three methods produce identical answers.
-<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
-between these methods.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1607">Fortran</indexterm></cindex>
-<para>Assume the files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
-each contain a record coordinate <var>time</var> of length 12 defined such
-that the third record in <file>86.nc</file> contains data from March 1986,
-etc.
-<acronym><acronymword>NCO</acronymword></acronym> knows how to hyperslab the record dimension across files.
-Thus, to average data from December, 1985 through February, 1986:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
-ncra -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-</pre></example>
-<noindent></noindent>
-<para>The file <file>87.nc</file> is superfluous, but does not cause an error.
-The <samp>-F</samp> turns on the Fortran (1-based) indexing convention.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1608">stride</indexterm></cindex>
-The following uses the <var>stride</var> option to average all the March
-temperature data from multiple input files into a single output file
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
-</pre></example>
-<para><xref label="Stride"><xrefnodename>Stride</xrefnodename></xref>, for a description of the <var>stride</var> argument.
-</para>
-<para>Assume the <var>time</var> coordinate is incrementally numbered such that
-January, <w><math>1985 = 1</math></w> and December, <w><math>1989 = 60</math></w>.
-Assuming <samp>??</samp> only expands to the five desired files, the following
-averages June, 1985&textndash;June, 1989:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -d time,6.,54. ??.nc 8506_8906.nc
-</pre></example>
-
-<page></page>
-<html endspaces=" ">
-<a name="ncrcat"></a> <!&textndash; http://nco.sf.net/nco.html#ncrcat &textndash;>
-</html>
-</section>
-<node name="ncrcat-netCDF-Record-Concatenator" spaces=" "><nodename>ncrcat netCDF Record Concatenator</nodename><nodenext spaces=" ">ncrename netCDF Renamer</nodenext><nodeprev spaces=" ">ncra netCDF Record Averager</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncrcat</command> netCDF Record Concatenator</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1609">concatenation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1610">record concatenation</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="39" mergedindex="cp">ncrcat</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat [-3] [-4] [-6] [-7] [-A] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>][,[<var>subcycle</var>]]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdr_pad <var>nbr</var>]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [--md5_digest] [-n <var>loop</var>] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn]
-[-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-X ...] [-x]
-[<var>input-files</var>] [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncrcat</command> concatenates record variables across an arbitrary
-number of <var>input-files</var>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1611">record dimension</indexterm></cindex>
-The final record dimension is by default the sum of the lengths of the
-record dimensions in the input files.
-<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
-distinctions between the various statistics tools and concatenators.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1612">multi-file operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1613">standard input</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1614"><code>stdin</code></indexterm></cindex>
-As a multi-file operator, <command>ncrcat</command> will read the list of
-<var>input-files</var> from <code>stdin</code> if they are not specified
-as positional arguments on the command line
-(<pxref label="Large-Numbers-of-Files"><xrefnodename>Large Numbers of Files</xrefnodename></pxref>).
-</para>
-<para>Input files may vary in size, but each must have a record dimension.
-The record coordinate, if any, should be monotonic (or else non-fatal
-warnings may be generated).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1615">hyperslab</indexterm></cindex>
-Hyperslabs along the record dimension that span more than one file are
-handled correctly.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1616">stride</indexterm></cindex>
-<command>ncra</command> supports the <var>stride</var> argument to the <samp>-d</samp>
-hyperslab option for the record dimension only, <var>stride</var> is not
-supported for non-record dimensions.
-</para>
-<findex index="fn" spaces=" "><indexterm index="fn" number="40" mergedindex="cp">ncpdq</indexterm></findex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1617">packing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1618">unpacking</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1619"><code>add_offset</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1620"><code>scale_factor</code></indexterm></cindex>
-<para>Concatenating a variable packed with different scales multiple datasets
-is beyond the capabilities of <command>ncrcat</command> (and <command>ncecat</command>,
-the other concatenator (<ref label="Concatenation"><xrefnodename>Concatenation</xrefnodename></ref>).
-<command>ncrcat</command> does not unpack data, it simply <emph>copies</emph> the data
-from the <var>input-files</var>, and the metadata from the <emph>first</emph>
-<var>input-file</var>, to the <var>output-file</var>.
-This means that data compressed with a packing convention must use
-the identical packing parameters (e.g., <code>scale_factor</code> and
-<code>add_offset</code>) for a given variable across <emph>all</emph> input files.
-Otherwise the concatenated dataset will not unpack correctly.
-The workaround for cases where the packing parameters differ across
-<var>input-files</var> requires three steps:
-First, unpack the data using <command>ncpdq</command>.
-Second, concatenate the unpacked data using <command>ncrcat</command>,
-Third, re-pack the result with <command>ncpdq</command>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1621">ARM conventions</indexterm></cindex>
-<para><command>ncrcat</command> applies special rules to <acronym><acronymword>ARM</acronymword></acronym> convention time
-fields (e.g., <code>time_offset</code>).
-See <ref label="ARM-Conventions"><xrefnodename>ARM Conventions</xrefnodename></ref> for a complete description.
-</para>
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncrcat"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncrcat &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Concatenate files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
-along the record dimension, and store the results in <file>8589.nc</file>:
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1622">globbing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1623"><code>NINTAP</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1624">Processor</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1625"><acronym><acronymword>CCM</acronymword></acronym> Processor</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat 85.nc 86.nc 87.nc 88.nc 89.nc 8589.nc
-ncrcat 8[56789].nc 8589.nc
-ncrcat -n 5,2,1 85.nc 8589.nc
-</pre></example>
-<noindent></noindent>
-<para>These three methods produce identical answers.
-<xref label="Specifying-Input-Files"><xrefnodename>Specifying Input Files</xrefnodename></xref>, for an explanation of the distinctions
-between these methods.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1626">Fortran</indexterm></cindex>
-<para>Assume the files <file>85.nc</file>, <file>86.nc</file>, <w>&dots; <file>89.nc</file></w>
-each contain a record coordinate <var>time</var> of <w>length 12</w> defined
-such that the third record in <file>86.nc</file> contains data from March
-1986, etc.
-<acronym><acronymword>NCO</acronymword></acronym> knows how to hyperslab the record dimension across files.
-Thus, to concatenate data from December, 1985&textndash;February, 1986:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat -d time,11,13 85.nc 86.nc 87.nc 8512_8602.nc
-ncrcat -F -d time,12,14 85.nc 86.nc 87.nc 8512_8602.nc
-</pre></example>
-<noindent></noindent>
-<para>The file <file>87.nc</file> is superfluous, but does not cause an error.
-When <command>ncra</command> and <command>ncrcat</command> encounter a file which does
-contain any records that meet the specified hyperslab criteria, they
-disregard the file and proceed to the next file without failing.
-The <samp>-F</samp> turns on the Fortran (1-based) indexing convention.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1627">stride</indexterm></cindex>
-</para>
-<para>The following uses the <var>stride</var> option to concatenate all the March
-temperature data from multiple input files into a single output file
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat -F -d time,3,,12 -v temperature 85.nc 86.nc 87.nc 858687_03.nc
-</pre></example>
-<para><xref label="Stride"><xrefnodename>Stride</xrefnodename></xref>, for a description of the <var>stride</var> argument.
-</para>
-<para>Assume the <var>time</var> coordinate is incrementally numbered such that
-January, <w>1985 = 1</w> and December, <w>1989 = 60.</w>
-Assuming <code>??</code> only expands to the five desired files, the following
-concatenates June, 1985&textndash;June, 1989:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrcat -d time,6.,54. ??.nc 8506_8906.nc
-</pre></example>
-
-<page></page>
-<html endspaces=" ">
-<a name="ncrename"></a> <!&textndash; http://nco.sf.net/nco.html#ncrename &textndash;>
-</html>
-</section>
-<node name="ncrename-netCDF-Renamer" spaces=" "><nodename>ncrename netCDF Renamer</nodename><nodenext spaces=" ">ncwa netCDF Weighted Averager</nodenext><nodeprev spaces=" ">ncrcat netCDF Record Concatenator</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncrename</command> netCDF Renamer</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1628">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1629">renaming groups</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1630">renaming dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1631">renaming attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1632">variable names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1633">dimension names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1634">attribute names</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1635">group names</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="41" mergedindex="cp">ncrename</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename [-a <var>old_name</var>,<var>new_name</var>] [-a &dots;] [-D <var>dbg</var>]
-[-d <var>old_name</var>,<var>new_name</var>] [-d &dots;] [-g <var>old_name</var>,<var>new_name</var>] [-g &dots;]
-[-h] [--hdf] [--hdr_pad <var>nbr</var>] [-l <var>path</var>] [-O] [-o <var>output-file</var>] [-p <var>path</var>] [-R] [-r]
-[-v <var>old_name</var>,<var>new_name</var>] [-v &dots;]
-<var>input-file</var> [[<var>output-file</var>]]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1636"><kbd>.</kbd></indexterm></cindex>
-<para><command>ncrename</command> renames netCDF dimensions, variables, attributes, and
-groups.
-Each object that has a name in the list of old names is renamed using
-the corresponding name in the list of new names.
-All the new names must be unique.
-Every old name must exist in the input file, unless the old name is
-preceded by the period (or &textldquo;dot&textrdquo;) character <samp>.</samp>.
-The validity of <var>old_name</var> is not checked prior to the renaming.
-Thus, if <var>old_name</var> is specified without the <samp>.</samp> prefix that
-indicates the presence of <var>old_name</var> is optional, and <var>old_name</var>
-is not present in <var>input-file</var>, then <command>ncrename</command> will abort.
-The <var>new_name</var> should never be prefixed by a <samp>.</samp> (or else the
-period will be included as part of the new name).
-As of <acronym><acronymword>NCO</acronymword></acronym> version 4.4.6 (released October, 2014), the
-<var>old_name</var> and <var>new_name</var> arguments may include (or be, for
-groups) partial or full group paths.
-The OPTIONS and EXAMPLES show how to select specific variables
-whose attributes are to be renamed.
-</para>
-<html endspaces=" ">
-<a name="bug_nc4_rename"></a> <!&textndash; http://nco.sf.net/nco.html#bug_nc4_rename &textndash;>
-</html>
-<cartouche endspaces=" ">
-<para>Caveat lector: Unforunately from 2007&textndash;present (October, 2014) the
-netCDF library (versions 4.0.0&textndash;4.3.2) contained bugs or limitations
-that sometimes prevent <acronym><acronymword>NCO</acronymword></acronym> from correctly renaming coordinate
-variables, dimensions, and groups in netCDF4 files.
-(To our knowledge the netCDF library calls for renaming always work
-well on netCDF3 files so one workaround to some netCDF4 issues is
-convert to netCDF3, rename, then convert back).
-To understand the renaming limitations associated with particular
-netCDF versions, read the <command>ncrename</command> documentation below in
-its entirety.
-</para></cartouche>
-
-<para>Although <command>ncrename</command> supports full pathnames for both
-<var>old_name</var> and <var>new_name</var>, this is really &textldquo;window dressing&textrdquo;.
-The full-path to <var>new_name</var> must be identical to the full-path to
-<var>old_name</var> in all classes of objects (attributes, variables,
-dimensions, or groups).
-In other words, <command>ncrename</command> can change only the local names
-of objects, it cannot change the location of the object in the group
-hierarchy within the file.
-Hence using a full-path in <var>new_name</var> is redundant.
-The object name is the terminal path component of <var>new_name</var> and
-this object must already exist in the group specified by the
-<var>old_name</var> path.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1637">data safety</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1638">safeguards</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1639">temporary output files</indexterm></cindex>
-<para><command>ncrename</command> is an exception to the normal <acronym><acronymword>NCO</acronymword></acronym> rule that
-the user will be interactively prompted before an existing file is
-changed, and that a temporary copy of an output file is constructed
-during the operation.
-If only <var>input-file</var> is specified, then <command>ncrename</command> changes
-object names in the <var>input-file</var> in place without prompting and
-without creating a temporary copy of <code>input-file</code>.
-This is because the renaming operation is considered reversible if the
-user makes a mistake.
-The <var>new_name</var> can easily be changed back to <var>old_name</var> by using
-<command>ncrename</command> one more time.
-</para>
-<para>Note that renaming a dimension to the name of a dependent variable can
-be used to invert the relationship between an independent coordinate
-variable and a dependent variable.
-In this case, the named dependent variable must be one-dimensional and
-should have no missing values.
-Such a variable will become a coordinate variable.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1640">performance</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1641">operator speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1642">speed</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1643">execution time</indexterm></cindex>
-<para>According to the <cite>netCDF User Guide</cite>, renaming objects in netCDF
-files does not incur the penalty of recopying the entire file when the
-<var>new_name</var> is shorter than the <var>old_name</var>.
-Thus <command>ncrename</command> may run much faster (at least on netCDF3 files)
-if judicious use of header padding (<pxref label="Metadata-Optimization"><xrefnodename>Metadata Optimization</xrefnodename></pxref>) was
-made when producing the <var>input-file</var>.
-Similarly, using the <samp>--hdr_pad</samp> option with <command>ncrename</command>
-helps ensure that future metadata changes to <var>output-file</var> occur
-as swifly as possible.
-</para>
-<noindent></noindent>
-<para>OPTIONS
-</para>
-<table commandarg="samp" spaces=" " endspaces=" ">
-<tableentry><tableterm><item spaces=" "><itemformat command="samp">-a <var>old_name</var>,<var>new_name</var></itemformat></item>
-</tableterm><tableitem><para>Attribute renaming.
-The old and new names of the attribute are specified with <samp>-a</samp>
-(or <samp>--attribute</samp>) by the associated <var>old_name</var> and
-<var>new_name</var> values.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1644"><code>global</code> attribute</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1645">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1646">attributes, global</indexterm></cindex>
-Global attributes are treated no differently than variable attributes.
-This option may be specified more than once.
-As mentioned above, all occurrences of the attribute of a given name
-will be renamed unless the <samp>.</samp> form is used, with one exception.
-To change the attribute name for a particular variable, specify
-the <var>old_name</var> in the format <var>old_var_name&arobase;old_att_name</var>.
-The <samp>&arobase;</samp> symbol delimits the variable from the attribute name.
-If the attribute is uniquely named (no other variables contain the
-attribute) then the <var>old_var_name&arobase;old_att_name</var> syntax is
-redundant.
-The <var>old_var_name</var> variable names <code>global</code> and <code>group</code>
-have special significance.
-They indicate that <var>old_att_nm</var> should only be renamed where it
-occurs as a global (i.e., root group) metadata attribute (for
-<code>global</code>), or (for <code>group</code>) as <emph>any</emph> group attribute, and
-not where it occurs as a variable attribute.
-The <var>var_name&arobase;att_name</var> syntax is accepted, though not required,
-for the <var>new_name</var>.
-</para>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-d <var>old_name</var>,<var>new_name</var></itemformat></item>
-</tableterm><tableitem><para>Dimension renaming.
-The old and new names of the dimension are specified with <samp>-d</samp>
-(or <samp>--dmn</samp>, <samp>--dimension</samp>) by the associated <var>old_name</var>
-and <var>new_name</var> values.
-This option may be specified more than once.
-</para>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-g <var>old_name</var>,<var>new_name</var></itemformat></item>
-</tableterm><tableitem><para>Group renaming.
-The old and new names of the group are specified with <samp>-g</samp>
-(or <samp>--grp</samp>, <samp>--group</samp>) by the associated <var>old_name</var>
-and <var>new_name</var> values.
-This option may be specified more than once.
-This functionality is only available in <acronym><acronymword>NCO</acronymword></acronym> version 4.3.7
-(October, 2013) or later, and only when built on netCDF library version
-4.3.1-rc1 (August, 2013) or later.
-</para>
-</tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="samp">-v <var>old_name</var>,<var>new_name</var></itemformat></item>
-</tableterm><tableitem><para>Variable renaming.
-The old and new names of the variable are specified with <samp>-v</samp>
-(or <samp>--variable</samp>) by the associated <var>old_name</var> and
-<var>new_name</var> values.
-This option may be specified more than once.
-</para></tableitem></tableentry></table>
-
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncrename"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncrename &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Rename the variable <code>p</code> to <code>pressure</code> and <code>t</code> to
-<code>temperature</code> in netCDF <file>in.nc</file>.
-In this case <code>p</code> must exist in the input file (or
-<command>ncrename</command> will abort), but the presence of <code>t</code> is optional:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename -v p,pressure -v .t,temperature in.nc
-</pre></example>
-
-<para>Rename the attribute <code>long_name</code> to <code>largo_nombre</code> in the
-variable <code>u</code>, and no other variables in netCDF <file>in.nc</file>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncrename -a u at long_name,largo_nombre in.nc
-</verbatim>
-</example>
-
-<para>Rename the group <code>g8</code> to <code>g20</code> in netCDF4 file
-<file>in_grp.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename -g g8,g20 in_grp.nc
-</pre></example>
-
-<para>Rename the variable <code>/g1/lon</code> to <code>longitude</code> in netCDF4
-<file>in_grp.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename -v /g1/lon,longitude in_grp.nc
-ncrename -v /g1/lon,/g1/longitude in_grp.nc # Alternate
-</pre></example>
-
-<html endspaces=" ">
-<a name="ncrename_crd"></a> <!&textndash; http://nco.sf.net/nco.html#ncrename_crd &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1647">coordinate variables</indexterm></cindex>
-<para><command>ncrename</command> does not automatically attach dimensions to variables of
-the same name.
-This is done to make renaming an easy way to change whether a variable
-is a coordinate.
-If you want to rename a coordinate variable so that it remains a
-coordinate variable, you must separately rename both the dimension and
-the variable:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncrename -d lon,longitude -v lon,longitude in.nc
-</pre></example>
-<para>Unfortunately, the netCDF4 library had a longstanding bug (all versions
-until 4.3.1-rc5 released in December, 2013) that crashed <acronym><acronymword>NCO</acronymword></acronym>
-when performing this operation.
-Simultaneously renaming variables and dimensions in netCDF4 files with
-earlier versions of netCDF is impossible; it must instead be done in two
-separate <command>ncrename</command> invocations (e.g., first rename the
-variable, then rename the dimension) to avoid triggering the libary
-bug.
-</para>
-<para>A related bug causes unintended side-effects with <command>ncrename</command>
-also built with all versions of the netCDF4 library until 4.3.1-rc5
-released in December, 2013):
-This bug caused renaming <emph>either</emph> a dimension <emph>or</emph> its
-associated coordinate variable (not both, which would fail as above) in
-a netCDF4 file to inadvertently rename both:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.1-rc5
-ncks -O -h -m -M -4 -v lat_T42 ~/nco/data/in.nc ~/foo.nc
-ncrename -O -v lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames dimension
-ncrename -O -d lat_T42,lat ~/foo.nc ~/foo2.nc # Also renames variable
-</pre></example>
-<para>To avoid this faulty behavior, either build <acronym><acronymword>NCO</acronymword></acronym> with netCDF
-version 4.3.1-rc5 or later, or convert the file to netCDF3 first,
-then rename as intended, then convert back.
-Unforunately while this bug and the related coordinate renaming bug
-were fixed in 4.3.1-rc5 (released in December, 2013), a new and related
-bug was discovered in October 2014.
-</para>
-<para>The final known netCDF bug that causes unintended side-effects with
-<command>ncrename</command> affects (at least) versions 4.3.1&textndash;4.3.2 of the
-netCDF4 library (and snapshots at least until October, 2014):
-This bug corrupts values or renamed netCDF4 coordinate variables
-(i.e., variables with underlying dimensions of the same name) and
-other (non-coordinate) variables that include an underlying dimension
-that was renamed.
-In other words, <emph>renaming</emph> coordinate variables and dimensions
-succeeds yet it corrupts the values contained by the affected array
-variables.
-This bug corrupts affected variables by replacing their values with the
-default <code>_FillValue</code> for that variable&textrsquo;s type:
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Demonstate bug in netCDF4/HDF5 library prior to netCDF-4.3.3
-ncks -O -4 -C -M -v lat ~/nco/data/in.nc ~/bug.nc
-ncrename -O -v lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
-ncrename -O -d lat,tal ~/bug.nc ~/foo.nc # Broken until netCDF-4.3.3
-ncrename -O -d lat,tal -v lat,tal ~/bug.nc ~/foo.nc # Broken too
-ncks --cdl ~/foo.nc
-</pre></example>
-<para>To avoid this faulty behavior, either build <acronym><acronymword>NCO</acronymword></acronym> with netCDF
-version 4.3.3 (TBD) or later, or convert the file to netCDF3 first, then
-rename as intended, then convert back.
-This bug does not affect renaming of groups or of attributes.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1648">global attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1649">group attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1650">attributes, global</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1651"><code>_FillValue</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1652"><code>missing_value</code></indexterm></cindex>
-<para>Create netCDF <file>out.nc</file> identical to <file>in.nc</file> except the
-attribute <code>_FillValue</code> is changed to <code>missing_value</code>,
-the attribute <code>units</code> is changed to <code>CGS_units</code> (but only in
-those variables which possess it), the attribute <code>hieght</code> is
-changed to <code>height</code> in the variable <code>tpt</code>, and in the
-variable <code>prs_sfc</code>, if it exists.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncrename -a _FillValue,missing_value -a .units,CGS_units \
- -a tpt at hieght,height -a prs_sfc at .hieght,height in.nc out.nc
-</verbatim>
-</example>
-<para>The presence and absence of the <samp>.</samp> and <samp>&arobase;</samp> features
-cause this command to execute successfully only if a number of
-conditions are met.
-All variables <emph>must</emph> have a <code>_FillValue</code> attribute <emph>and</emph>
-<code>_FillValue</code> must also be a global attribute.
-The <code>units</code> attribute, on the other hand, will be renamed to
-<code>CGS_units</code> wherever it is found but need not be present in
-the file at all (either as a global or a variable attribute).
-The variable <code>tpt</code> must contain the <code>hieght</code> attribute.
-The variable <code>prs_sfc</code> need not exist, and need not contain the
-<code>hieght</code> attribute.
-</para>
-<para>Rename the global or group attribute <code>Convention</code> to
-<code>Conventions</code>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ncrename -a Convention,Conventions in.nc # Variable and group atts.
-ncrename -a .Convention,Conventions in.nc # Variable and group atts.
-ncrename -a @Convention,Conventions in.nc # Group atts. only
-ncrename -a @.Convention,Conventions in.nc # Group atts. only
-ncrename -a global at Convention,Conventions in.nc # Group atts. only
-ncrename -a .global at .Convention,Conventions in.nc # Group atts. only
-ncrename -a global at Convention,Conventions in.nc # Global atts. only
-ncrename -a .global at .Convention,Conventions in.nc # Global atts. only
-</verbatim>
-</example>
-<para>The examples without the <code>&arobase;</code> character attempt to change the
-attribute name in both Global or Group and variable attributes.
-The examples with the <code>&arobase;</code> character attempt to change only
-global and group <code>Convention</code> attributes, and leave unchanged any
-<code>Convention</code> attributes attached directly to variables.
-Attributes prefixed with a period (<code>.Convention</code>) need not be
-present.
-Attributes not prefixed with a period (<code>Convention</code>) must be
-present.
-Variables prefixed with a period (<code>.</code> or <code>.global</code>) need not
-be present.
-Variables not prefixed with a period (<code>global</code>) must be present.
-</para>
-<page></page>
-<html endspaces=" ">
-<a name="ncwa"></a> <!&textndash; http://nco.sf.net/nco.html#ncwa &textndash;>
-</html>
-</section>
-<node name="ncwa-netCDF-Weighted-Averager" spaces=" "><nodename>ncwa netCDF Weighted Averager</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">ncrename netCDF Renamer</nodeprev><nodeup spaces=" ">Reference Manual</nodeup></node>
-<section spaces=" "><sectiontitle><command>ncwa</command> netCDF Weighted Averager</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1653">averaging data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1654">weighted average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1655">masked average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1656">broadcasting variables</indexterm></cindex>
-<findex index="fn" spaces=" "><indexterm index="fn" number="42" mergedindex="cp">ncwa</indexterm></findex>
-
-<noindent></noindent>
-<para>SYNTAX
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa [-3] [-4] [-6] [-7] [-A] [-a <var>dim</var>[,&dots;]] [-B <var>mask_cond</var>] [-b] [-C] [-c]
-[--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min sz] [--cnk_plc plc] [--cnk_scl sz]
-[-D <var>dbg</var>] [-d <var>dim</var>,[<var>min</var>][,[<var>max</var>][,[<var>stride</var>]]] [-F]
-[-G <var>gpe_dsc</var>] [-g <var>grp</var>[,&dots;]] [-h] [--hdr_pad <var>nbr</var>] [-I]
-[-L <var>dfl_lvl</var>] [-l <var>path</var>] [-M <var>mask_val</var>] [-m <var>mask_var</var>] [-N] [--no_tmp_fl]
-[-O] [-o <var>output-file</var>] [-p <var>path</var>] [--ppc ...] [-R] [-r] [--ram_all] [--rth_dbl|flt]
-[-T <var>mask_comp</var>] [-t <var>thr_nbr</var>] [--unn] [-v <var>var</var>[,&dots;]] [-w <var>weight</var>]
-[-X ...] [-x] [-y <var>op_typ</var>]
-<var>input-file</var> [<var>output-file</var>]
-</pre></example>
-
-<noindent></noindent>
-<para>DESCRIPTION
-</para>
-<para><command>ncwa</command> averages variables in a single file over arbitrary
-dimensions, with options to specify weights, masks, and normalization.
-<xref label="Statistics-vs_002e-Concatenation"><xrefnodename>Statistics vs. Concatenation</xrefnodename></xref>, for a description of the
-distinctions between the various statistics tools and concatenators.
-The default behavior of <command>ncwa</command> is to arithmetically average
-every numerical variable over all dimensions and to produce a scalar
-result for each.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1657">degenerate dimension</indexterm></cindex>
-<para>Averaged dimensions are, by default, eliminated as dimensions.
-Their corresponding coordinates, if any, are output as scalar
-variables.
-The <samp>-b</samp> switch (and its long option equivalents <samp>--rdd</samp> and
-<samp>--retain-degenerate-dimensions</samp>) causes <command>ncwa</command> to retain
-averaged dimensions as degenerate (<w>size 1</w>) dimensions.
-This maintains the association between a dimension (or coordinate) and
-variables after averaging and simplifies, for instance, later
-concatenation along the degenerate dimension.
-</para>
-<para>To average variables over only a subset of their dimensions, specify
-these dimensions in a comma-separated list following <samp>-a</samp>, e.g.,
-<samp>-a time,lat,lon</samp>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1658">arithmetic operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1659">hyperslab</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1660"><code>-d <var>dim</var>,[<var>min</var>][,[<var>max</var>]]</code></indexterm></cindex>
-As with all arithmetic operators, the operation may be restricted to
-an arbitrary hypserslab by employing the <samp>-d</samp> option
-(<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-<command>ncwa</command> also handles values matching the variable&textrsquo;s
-<code>_FillValue</code> attribute correctly.
-Moreover, <command>ncwa</command> understands how to manipulate user-specified
-weights, masks, and normalization options.
-With these options, <command>ncwa</command> can compute sophisticated averages
-(and integrals) from the command line.
-</para>
-<html endspaces=" ">
-<a name="-w"></a> <!&textndash; http://nco.sf.net/nco.html#-w &textndash;>
-<a name="wgt"></a> <!&textndash; http://nco.sf.net/nco.html#wgt &textndash;>
-</html>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1661"><code>-w <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1662"><code>--weight <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1663"><code>--wgt_var <var>weight</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1664"><code>-m <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1665"><code>--mask-variable <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1666"><code>--mask_variable <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1667"><code>--msk_nm <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1668"><code>--msk_var <var>mask_var</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1669"><code>-B <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1670"><code>--msk_cnd <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1671"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
-<para><var>mask_var</var> and <var>weight</var>, if specified, are broadcast to conform
-to the variables being averaged.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1672">rank</indexterm></cindex>
-The rank of variables is reduced by the number of dimensions which they
-are averaged over.
-Thus arrays which are one dimensional in the <var>input-file</var> and are
-averaged by <command>ncwa</command> appear in the <var>output-file</var> as scalars.
-This allows the user to infer which dimensions may have been averaged.
-Note that that it is impossible for <command>ncwa</command> to make make a
-<var>weight</var> or <var>mask_var</var> of rank <var>W</var> conform to a <var>var</var> of
-rank <var>V</var> if <var>W > V</var>.
-This situation often arises when coordinate variables (which, by
-definition, are one dimensional) are weighted and averaged.
-<command>ncwa</command> assumes you know this is impossible and so <command>ncwa</command>
-does not attempt to broadcast <var>weight</var> or <var>mask_var</var> to conform
-to <var>var</var> in this case, nor does <command>ncwa</command> print a warning
-message telling you this, because it is so common.
-Specifying <var>dbg > 2</var> does cause <command>ncwa</command> to emit warnings in
-these situations, however.
-</para>
-<para>Non-coordinate variables are always masked and weighted if specified.
-Coordinate variables, however, may be treated specially.
-By default, an averaged coordinate variable, e.g., <code>latitude</code>,
-appears in <var>output-file</var> averaged the same way as any other variable
-containing an averaged dimension.
-In other words, by default <command>ncwa</command> weights and masks
-coordinate variables like all other variables.
-This design decision was intended to be helpful but for some
-applications it may be preferable not to weight or mask coordinate
-variables just like all other variables.
-Consider the following arguments to <command>ncwa</command>:
-<code>-a latitude -w lat_wgt -d latitude,0.,90.</code> where <code>lat_wgt</code> is
-a weight in the <code>latitude</code> dimension.
-Since, by default <command>ncwa</command> weights coordinate variables, the
-value of <code>latitude</code> in the <var>output-file</var> depends on the weights
-in <var>lat_wgt</var> and is not likely to <w>be 45.0</w>, the midpoint latitude
-of the hyperslab.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1673">coordinate variable</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1674"><code>-I</code></indexterm></cindex>
-Option <samp>-I</samp> overrides this default behavior and causes
-<command>ncwa</command> not to weight or mask coordinate variables
-<footnote><para>The default behavior of (<samp>-I</samp>) changed on
-19981201&textmdash;before this date the default was not to weight or mask
-coordinate variables.</para></footnote>.
-In the above case, this causes the value of <code>latitude</code> in the
-<var>output-file</var> to <w>be 45.0</w>, an appealing result.
-Thus, <samp>-I</samp> specifies simple arithmetic averages for the coordinate
-variables.
-In the case of latitude, <samp>-I</samp> specifies that you prefer to archive
-the arithmetic mean latitude of the averaged hyperslabs rather than the
-area-weighted mean latitude.
-<footnote><para>If <code>lat_wgt</code> contains Gaussian weights then the value of
-<code>latitude</code> in the <var>output-file</var> will be the area-weighted
-centroid of the hyperslab.
-For the example given, this is about <w>30 degrees.</w></para></footnote>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1675">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1676">operation types</indexterm></cindex>
-<para>As explained in <xref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></xref>, <command>ncwa</command>
-<emph>always averages</emph> coordinate variables regardless of the arithmetic
-operation type performed on the non-coordinate variables.
-This is independent of the setting of the <samp>-I</samp> option.
-The mathematical definition of operations involving rank reduction
-is given above (<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Mask condition</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Normalization and Integration</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<html endspaces=" ">
-<a name="mask"></a> <!&textndash; http://nco.sf.net/nco.html#mask &textndash;>
-<a name="msk"></a> <!&textndash; http://nco.sf.net/nco.html#msk &textndash;>
-<a name="-m"></a> <!&textndash; http://nco.sf.net/nco.html#-m &textndash;>
-</html>
-<node name="Mask-condition" spaces=" "><nodename>Mask condition</nodename><nodenext spaces=" ">Normalization and Integration</nodenext><nodeprev spaces=" ">ncwa netCDF Weighted Averager</nodeprev><nodeup spaces=" ">ncwa netCDF Weighted Averager</nodeup></node>
-<subsection spaces=" "><sectiontitle>Mask condition</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1677">mask condition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1678">truth condition</indexterm></cindex>
-<tex endspaces=" ">
-Each $\xxx_{\idx}$ also has an associated masking
-weight~$\mskflg_{\idx}$ whose value is~0 or~1 (false or true).
-The value of~$\mskflg_{\idx}$ is always~1 unless a <var>mask\_var</var> is
-specified (with
-<samp>-m</samp>).
-As noted above, <var>mask\_var</var> is broadcast, if possible, to conform
-to the variable being averaged.
-In this case, the value of~$\mskflg_{\idx}$ depends on the
-<dfn>mask condition</dfn> also known as the <dfn>truth condition</dfn>.
-As expected, $\mskflg_{\idx} = 1$ when the mask condition is
-<dfn>true</dfn> and $\mskflg_{\idx} = 0$ otherwise.
-</tex>
-
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1679"><code>--op_rlt <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1680"><code>--mask_comparator <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1681"><code>--msk_cmp_typ <var>mask_comp</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1682"><code>--msk_cnd_sng <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1683"><code>--mask_condition <var>mask_cond</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1684"><code>-B <var>mask_cond</var></code></indexterm></cindex>
-<para>The mask condition has the syntax <math><var>mask_var</var></math>
-<math><var>mask_comp</var></math> <math><var>mask_val</var></math>.
-The preferred method to specify the mask condition is in one string with
-the <samp>-B</samp> or <samp>--mask_condition</samp> switches.
-The older method is to use the three switches <samp>-m</samp>, <samp>-T</samp>, and
-<samp>-M</samp> to specify the <var>mask_var</var>, <var>mask_comp</var>, and
-<var>mask_val</var>, respectively.
-<footnote><para>The three switches <samp>-m</samp>, <samp>-T</samp>, and <samp>-M</samp> are
-maintained for backward compatibility and may be deprecated in the
-future.
-It is safest to write scripts using <samp>--mask_condition</samp>.</para></footnote>.
-The <var>mask_condition</var> string is automatically parsed into its three
-constituents <var>mask_var</var>, <var>mask_comp</var>, and <var>mask_val</var>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1685">comparator</indexterm></cindex>
-<para>Here <var>mask_var</var> is the name of the masking variable (specified with
-<samp>-m</samp>, <samp>--mask-variable</samp>, <samp>--mask_variable</samp>,
-<samp>--msk_nm</samp>, or <samp>--msk_var</samp>).
-The truth <var>mask_comp</var> argument (specified with <samp>-T</samp>,
-<samp>--mask_comparator</samp>, <samp>--msk_cmp_typ</samp>, or <samp>--op_rlt</samp> may
-be any one of the six arithmetic comparators: <kbd>eq</kbd>, <kbd>ne</kbd>,
-<kbd>gt</kbd>, <kbd>lt</kbd>, <kbd>ge</kbd>, <kbd>le</kbd>.
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-These are the Fortran-style character abbreviations for the logical
-comparisons $=$, $\neq$, $>$, $<$, $\ge$, $\le$.
-<clear name="flg" line=" flg"></clear>
-</tex>
-These are the Fortran-style character abbreviations for the logical
-comparisons <math>==</math>, <math>!=</math>, <math>></math>, <math><</math>, <math>>=</math>,
-<math><=</math>.
-<clear name="flg" line=" flg"></clear>
-The mask comparator defaults to <kbd>eq</kbd> (equality).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1686"><code>--mask-value <var>mask_val</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1687"><code>--mask_value <var>mask_val</var></code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1688"><code>--msk_val <var>mask_val</var></code></indexterm></cindex>
-The <var>mask_val</var> argument to <samp>-M</samp> (or <samp>--mask-value</samp>, or
-<samp>--msk_val</samp>) is the right hand side of the
-<dfn>mask condition</dfn>.
-Thus for the <var>i</var>&textrsquo;th element of the hyperslab to be averaged,
-the mask condition is
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-{\it mask$_{\idx}$ mask\_comp mask\_val}.
-<clear name="flg" line=" flg"></clear>
-</tex>
-<math>mask(i)</math> <var>mask_comp</var> <var>mask_val</var>.
-<clear name="flg" line=" flg"></clear>
-</para>
-<tex endspaces=" ">
-Each~$\xxx_{\idx}$ is also associated with an additional
-weight~$\wgt_{\idx}$ whose value may be user-specified.
-The value of~$\wgt_{\idx}$ is identically~1 unless the user specifies a
-weighting variable <var>weight</var> (with <samp>-w</samp>, <samp>--weight</samp>, or
-<samp>--wgt\_var</samp>).
-In this case, the value of~$\wgt_{\idx}$ is determined by the
-<var>weight</var> variable in the <var>input-file</var>.
-As noted above, <var>weight</var> is broadcast, if possible, to conform
-to the variable being averaged.
-
-$\tllnbr$ is the number of input elements $\xxx_{\idx}$ which actually
-contribute to output element $\xxx_{\jjj}$.
-$\tllnbr$ is also known as the <dfn>tally</dfn> and is defined as
-$$
-\tllnbr = \sum_{\idx=1}^{\idx=\lmnnbr} \mssflg_{\idx} \mskflg_{\idx}
-$$
-$\tllnbr$ is identical to the denominator of the generic averaging
-expression except for the omission of the weight $\wgt_{\idx}$.
-Thus $\tllnbr = \lmnnbr$ whenever no input points are missing values or
-are masked.
-Whether an element contributes to the output, and thus increments
-$\tllnbr$ by one, has more to do with the above two criteria (missing
-value and masking) than with the numeric value of the element per se.
-For example, $\xxx_{\idx}=0.0$ does contribute to $\xxx_{\jjj}$
-(assuming the <code>_FillValue</code> attribute is not~0.0 and location
-$\idx$ is not masked).
-The value $\xxx_{\idx}=0.0$ will not change the numerator of the generic
-averaging expression, but it will change the denominator (unless its
-weight $\wgt_{\idx}=0.0$ as well).
-</tex>
-
-<html endspaces=" ">
-<a name="nrm"></a> <!&textndash; http://nco.sf.net/nco.html#nrm &textndash;>
-<a name="ntg"></a> <!&textndash; http://nco.sf.net/nco.html#ntg &textndash;>
-</html>
-</subsection>
-<node name="Normalization-and-Integration" spaces=" "><nodename>Normalization and Integration</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Mask condition</nodeprev><nodeup spaces=" ">ncwa netCDF Weighted Averager</nodeup></node>
-<subsection spaces=" "><sectiontitle>Normalization and Integration</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1689">normalization</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1690"><code>-N</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1691"><code>numerator</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1692">integration</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1693">dot product</indexterm></cindex>
-<para><command>ncwa</command> has one switch which controls the normalization of the
-averages appearing in the <var>output-file</var>.
-Short option <samp>-N</samp> (or long options <samp>--nmr</samp> or
-<samp>--numerator</samp>) prevents <command>ncwa</command> from dividing the weighted
-sum of the variable (the numerator in the averaging expression) by the
-weighted sum of the weights (the denominator in the averaging
-expression).
-Thus <samp>-N</samp> tells <command>ncwa</command> to return just the numerator of the
-arithmetic expression defining the operation (<pxref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></pxref>).
-</para>
-<para>With this normalization option, <command>ncwa</command> can integrate variables.
-Averages are first computed as sums, and then normalized to obtain the
-average.
-The original sum (i.e., the numerator of the expression in
-<ref label="Operation-Types"><xrefnodename>Operation Types</xrefnodename></ref>) is output if default normalization is turned off
-(<w>with <samp>-N</samp></w>).
-This sum is the integral (not the average) over the specified
-(<w>with <samp>-a</samp></w>, or all, if none are specified) dimensions.
-The weighting variable, if specified (<w>with <samp>-w</samp></w>), plays the
-role of the differential increment and thus permits more sophisticated
-integrals (i.e., weighted sums) to be output.
-For example, consider the variable
-<code>lev</code> where <math><var>lev</var> = [100,500,1000]</math> weighted by
-the weight <code>lev_wgt</code> where <math><var>lev_wgt</var> = [10,2,1]</math>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1694">dot product</indexterm></cindex>
-The vertical integral of <code>lev</code>, weighted by <code>lev_wgt</code>,
-is the dot product of <var>lev</var> and <var>lev_wgt</var>.
-That this is <w>is 3000.0</w> can be seen by inspection and verified with
-the integration command
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -N -a lev -v lev -w lev_wgt in.nc foo.nc;ncks foo.nc
-</pre></example>
-
-<ignore>
-fxm TODO nco702
-As explained in @xref{Operation Types}, @command{ncwa}
- at emph{always averages} coordinate variables regardless of the arithmetic
-operation type performed on the non-coordinate variables.
-The single exception is shown in the above example.
-The @samp{-N} switch turns off normalization so variables which are to be
-averaged, including coordinate variables, are not normalized.
-This is equivalent to summation or integration.
-</ignore>
-
-<ignore>
- at c NB: these masking features are deprecated
-The second normalization option tells @command{ncwa} to multiply the
-weighted average the variable (given by the averaging expression)
-by the @w{tally, @var{M}}.
-Thus this option is similar to integration---multiplying the mean value
-of a quantity by the number of gridpoints to which it applies.
-
-The third normalization option is equivalent to specifying the first two
-options simultaneously.
-In other words this option causes @command{ncwa} to return
- at w{@var{M} times} the numerator of the generic averaging expression.
-With these normalization options, @command{ncwa} can compute
-sophisticated averages (and integrals) from the command line.
-</ignore>
-
-<noindent></noindent>
-<html endspaces=" ">
-<a name="xmp_ncwa"></a> <!&textndash; http://nco.sf.net/nco.html#xmp_ncwa &textndash;>
-</html>
-<para>EXAMPLES
-</para>
-<para>Given file <file>85_0112.nc</file>:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-netcdf 85_0112 {
-dimensions:
- lat = 64 ;
- lev = 18 ;
- lon = 128 ;
- time = UNLIMITED ; // (12 currently)
-variables:
- float lat(lat) ;
- float lev(lev) ;
- float lon(lon) ;
- float time(time) ;
- float scalar_var ;
- float three_dmn_var(lat, lev, lon) ;
- float two_dmn_var(lat, lev) ;
- float mask(lat, lon) ;
- float gw(lat) ;
-}
-</verbatim>
-</example>
-
-<para>Average all variables in <file>in.nc</file> over all dimensions and store
-results in <file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>All variables in <file>in.nc</file> are reduced to scalars in <file>out.nc</file>
-since <command>ncwa</command> averages over all dimensions unless otherwise
-specified (with <samp>-a</samp>).
-</para>
-<para>Store the zonal (longitudinal) mean of <file>in.nc</file> in <file>out.nc</file>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -a lon in.nc out1.nc
-ncwa -a lon -b in.nc out2.nc
-</pre></example>
-<noindent></noindent>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1695">degenerate dimension</indexterm></cindex>
-<para>The first command turns <code>lon</code> into a scalar and the second retains
-<code>lon</code> as a degenerate dimension in all variables.
-</para><example endspaces=" ">
-<pre xml:space="preserve">% ncks -C -H -v lon out1.nc
-lon = 135
-% ncks -C -H -v lon out2.nc
-lon[0] = 135
-</pre></example>
-<para>In either case the tally is simply the size of <code>lon</code>, i.e., 180
-for the <file>85_0112.nc</file> file described by the sample header above.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1696"><code>gw</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1697">Gaussian weights</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1698">climate model</indexterm></cindex>
-<para>Compute the meridional (latitudinal) mean, with values weighted by
-the corresponding element of <var>gw</var>
-<footnote><para><code>gw</code> stands for <dfn>Gaussian weight</dfn> in many
-climate models.</para></footnote>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -w gw -a lat in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>Here the tally is simply the size of <code>lat</code>, <w>or 64.</w>
-The sum of the Gaussian weights <w>is 2.0.</w>
-</para>
-<para>Compute the area mean over the tropical Pacific:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -w gw -a lat,lon -d lat,-20.,20. -d lon,120.,270. in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>Here the tally is
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$64 \times 128 = 8192$.
-<clear name="flg" line=" flg"></clear>
-</tex>
-64 times 128 = 8192.
-<clear name="flg" line=" flg"></clear>
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1699"><code>ORO</code></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1700">climate model</indexterm></cindex>
-<para>Compute the area-mean over the globe using only points for which
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$ORO < 0.5$
-<clear name="flg" line=" flg"></clear>
-</tex>
-<var>ORO</var> < 0.5
-<clear name="flg" line=" flg"></clear>
-<footnote><para><code>ORO</code> stands for <dfn>Orography</dfn> in some climate models
-and in those models <math><var>ORO</var> < 0.5</math> selects ocean gridpoints.</para></footnote>:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -B 'ORO < 0.5' -w gw -a lat,lon in.nc out.nc
-ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon in.nc out.nc
-</pre></example>
-<noindent></noindent>
-<para>It is considerably simpler to specify the complete <var>mask_cond</var> with
-the single string argument to <samp>-B</samp> than with the three separate
-switches <samp>-m</samp>, <samp>-T</samp>, and <samp>-M</samp>
-<footnote><para>Unfortunately the <samp>-B</samp> and <samp>--mask_condition</samp>
-options are unsupported on Windows (with the <acronym><acronymword>MVS</acronymword></acronym> compiler),
-which lacks a free, standard parser and lexer.</para></footnote>.
-If in doubt, enclose the <var>mask_cond</var> within quotes since some
-of the comparators have special meanings to the shell.
-</para>
-<para>Assuming 70% of the gridpoints are maritime, then here the tally is
-<set name="flg" line=" flg"></set>
-<tex endspaces=" ">
-$0.70 \times 8192 \approx 5734$.
-<clear name="flg" line=" flg"></clear>
-</tex>
-0.70 times 8192 = 5734.
-<clear name="flg" line=" flg"></clear>
-</para>
-<para>Compute the global annual mean over the maritime tropical Pacific:
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -B 'ORO < 0.5' -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-ncwa -m ORO -M 0.5 -T lt -w gw -a lat,lon,time \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-</pre></example>
-<para>Further examples will use the one-switch specification of
-<var>mask_cond</var>.
-</para>
-<para>Determine the total area of the maritime tropical Pacific, assuming
-the variable <var>area</var> contains the area of each gridcell
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncwa -N -v area -B 'ORO < 0.5' -a lat,lon \
- -d lat,-20.0,20.0 -d lon,120.0,270.0 in.nc out.nc
-</pre></example>
-<para>Weighting <var>area</var> (e.g., by <var>gw</var>) is not appropriate because
-<var>area</var> is <emph>already</emph> area-weighted by definition.
-Thus the <samp>-N</samp> switch, or, equivalently, the <samp>-y ttl</samp> switch,
-correctly integrate the cell areas into a total regional area.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1701">mask condition</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1702">truth condition</indexterm></cindex>
-<para>Mask a file to contain <var>_FillValue</var> everywhere except where
-<math><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var></math>:
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-# Set masking variable and its scalar thresholds
-export msk_var='three_dmn_var_dbl' # Masking variable
-export thr_max='20' # Maximum allowed value
-export thr_min='10' # Minimum allowed value
-ncecat -O in.nc out.nc # Wrap out.nc in degenerate "record" dimension
-ncwa -O -a record -B "${msk_var} <= ${thr_max}" out.nc out.nc
-ncecat -O out.nc out.nc # Wrap out.nc in degenerate "record" dimension
-ncwa -O -a record -B "${msk_var} >= ${thr_min}" out.nc out.nc
-</verbatim>
-</example>
-<para>After the first use of <command>ncwa</command>, <file>out.nc</file> contains
-<var>_FillValue</var> where <code>${msk_var} >= ${thr_max}</code>.
-The process is then repeated on the remaining data to filter out
-points where <code>${msk_var} <= ${thr_min}</code>.
-The resulting <file>out.nc</file> contains valid data only
-where <math><var>thr_min</var> <= <var>msk_var</var> <= <var>thr_max</var></math>.
-</para>
-<html endspaces=" ">
-<a name="ctr"></a> <!&textndash; http://nco.sf.net/nco.html#ctr &textndash;>
-</html>
-</subsection>
-</section>
-</chapter>
-<node name="Contributing" spaces=" "><nodename>Contributing</nodename><nodenext spaces=" ">Quick Start</nodenext><nodeprev spaces=" ">Reference Manual</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Contributing</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1703">contributing</indexterm></cindex>
-<para>We welcome contributions from anyone.
-The project homepage at <uref><urefurl>https://sf.net/projects/nco</urefurl></uref>
-contains more information on how to contribute.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1704">PayPal</indexterm></cindex>
-<para>Financial contributions to <acronym><acronymword>NCO</acronymword></acronym> development may be made through
-<uref><urefurl>https://www.paypal.com/xclick/business=zender%40uci.edu&item_name=NCO+development&item_number=nco_dnt_dvl&no_note=1&tax=0¤cy_code=USD</urefurl><urefdesc spaces=" ">PayPal</urefdesc></uref>.
-<acronym><acronymword>NCO</acronymword></acronym> has been shared for over <w>10 years</w> yet only two
-users have contributed any money to the developers
-<footnote spaces="\n"><cindex index="cp" spaces=" "><indexterm index="cp" number="1705">chocolate</indexterm></cindex>
-<para>Happy users have sent me a few gifts, though.
-This includes a box of imported chocolate.
-Mmm.
-Appreciation and gifts are definitely better than money.
-Naturally, I&textrsquo;m too lazy to split and send gifts to the other developers.
-However, unlike some <acronym><acronymword>NCO</acronymword></acronym> developers, I have a steady "real job".
-My intent is to split monetary donations among the active developers
-and to send them their shares via PayPal.</para></footnote>.
-So you could be the third!
-</para>
-<html endspaces=" ">
-<a name="dvl"></a> <!&textndash; http://nco.sf.net/nco.html#dvl &textndash;>
-<a name="cnt"></a> <!&textndash; http://nco.sf.net/nco.html#cnt &textndash;>
-<a name="ppl"></a> <!&textndash; http://nco.sf.net/nco.html#ppl &textndash;>
-</html>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Contributors</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Citation</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Proposals for Institutional Funding</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Contributors" spaces=" "><nodename>Contributors</nodename><nodenext spaces=" ">Citation</nodenext><nodeprev spaces=" ">Contributing</nodeprev><nodeup spaces=" ">Contributing</nodeup></node>
-<section spaces=" "><sectiontitle>Contributors</sectiontitle>
-<para><acronym><acronymword>NCO</acronymword></acronym> would not exist without the dedicated efforts of the
-remarkable software engineers who conceive, develop, and
-maintain netCDF, UDUnits, and OPeNDAP.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1706">Russ Rew</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1707">John Caron</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1708">Glenn Davis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1709">Steve Emmerson</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1710">James Gallagher</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1711">Ed Hartnett</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1712">Dennis Heimbigner</indexterm></cindex>
-Since 1995 <acronym><acronymword>NCO</acronymword></acronym> has received support from, I believe, the
-entire staff of all these projects, including
-Russ Rew,
-John Caron,
-Glenn Davis,
-Steve Emmerson,
-James Gallagher,
-Ed Hartnett,
-and Dennis Heimbigner.
-In addition to their roles in maintaining the software stack on which
-<acronym><acronymword>NCO</acronymword></acronym> perches, Yertl-like, some of these gentlemen have advised
-or contributed to <acronym><acronymword>NCO</acronymword></acronym> specifically. That support is
-acknowledged separately below.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1713">contributors</indexterm></cindex>
-<para>The primary contributors to <acronym><acronymword>NCO</acronymword></acronym> development have been:
-</para><table commandarg="asis" spaces=" " endspaces=" ">
-<beforefirstitem><cindex index="cp" spaces=" "><indexterm index="cp" number="1714">Charlie Zender</indexterm></cindex>
-</beforefirstitem><tableentry><tableterm><item spaces=" "><itemformat command="asis">Charlie Zender</itemformat></item>
-</tableterm><tableitem><para>All concept, design and implementation from 1995&textndash;2000.
-Since then autotools, bug-squashing, <acronym><acronymword>CDL</acronymword></acronym>, chunking,
-documentation, anchoring, recursion, <acronym><acronymword>GPE</acronymword></acronym>, packing,
-<acronym><acronymword>NCO</acronymword></acronym> library redesign, <command>ncap2</command> features,
-<command>ncbo</command>, <command>ncpdq</command>, <acronym><acronymword>SMP</acronymword></acronym> threading and <acronym><acronymword>MPI</acronymword></acronym> parallelization,
-netCDF4 integration, external funding, project management, science
-research, releases.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1715">Henry Butowsky</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Henry Butowsky</itemformat></item>
-</tableterm><tableitem><para>Non-linear operations and <code>min()</code>, <code>max()</code>, <code>total()</code>
-support in <command>ncra</command> and <command>ncwa</command>.
-Type conversion for arithmetic.
-Migration to netCDF3 <acronym><acronymword>API</acronymword></acronym>.
-<command>ncap2</command> parser, lexer, <acronym><acronymword>GSL</acronymword></acronym>-support, <w>and I/O</w>.
-Multislabbing algorithm.
-Variable wildcarding.
-Numerous hacks.
-<command>ncap2</command> language.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1716">Rorik Peterson</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Rorik Peterson</itemformat></item>
-</tableterm><tableitem><para>Original autotools build support.
-Long command-line options.
-Original UDUnits support.
-Debianization.
-Numerous bug-fixes.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1717">Joe Hamman</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Joe Hamman</itemformat></item>
-</tableterm><tableitem><para>Python bindings (NCOpy).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1718">Daniel Wang</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Daniel Wang</itemformat></item>
-</tableterm><tableitem><para>Script Workflow Analysis for MultiProcessing (<acronym><acronymword>SWAMP</acronymword></acronym>).
-<acronym><acronymword>RPM</acronymword></acronym> support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1719">Harry Mangalam</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Harry Mangalam</itemformat></item>
-</tableterm><tableitem><para>Benchmarking.
-OPeNDAP configuration.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1720">Pedro Vicente</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Pedro Vicente</itemformat></item>
-</tableterm><tableitem><para>Windows Visual Studio support.
-netCDF4 groups.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1721">Russ Rew</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Russ Rew</itemformat></item>
-</tableterm><tableitem><para>Advice on <acronym><acronymword>NCO</acronymword></acronym> structural algorithms
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1722">Brian Mays</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Brian Mays</itemformat></item>
-</tableterm><tableitem><para>Original packaging for Debian <acronym><acronymword>GNU</acronymword></acronym>/Linux, <command>nroff</command> man pages.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1723">George Shapovalov</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">George Shapovalov</itemformat></item>
-</tableterm><tableitem><para>Packaging for Gentoo <acronym><acronymword>GNU</acronymword></acronym>/Linux.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1724">Bill Kocik</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Bill Kocik</itemformat></item>
-</tableterm><tableitem><para>Memory management.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1725">Len Makin</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Len Makin</itemformat></item>
-</tableterm><tableitem><para>NEC SX architecture support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1726">Jim Edwards</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Jim Edwards</itemformat></item>
-</tableterm><tableitem><para>AIX architecture support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1727">Juliana Rew</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Juliana Rew</itemformat></item>
-</tableterm><tableitem><para>Compatibility with large <acronym><acronymword>PID</acronymword></acronym>s.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1728">Karen Schuchardt</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Karen Schuchardt</itemformat></item>
-</tableterm><tableitem><para>Auxiliary coordinate support.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1729">Gayathri Venkitachalam</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Gayathri Venkitachalam</itemformat></item>
-</tableterm><tableitem><para><acronym><acronymword>MPI</acronymword></acronym> implementation.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1730">Scott Capps</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Scott Capps</itemformat></item>
-</tableterm><tableitem><para>Large work-load testing
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1731">Peter Campbell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1732">Martin Dix</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1733">Mark Flanner</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1734">Markus Liebig</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1735">Keith Lindsay</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1736">Stu Muller</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1737">Mike Page</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1738">Martin Schmidt</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1739">Lori Sentman</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1740">Michael Schulz</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1741">Rich Signell</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1742">Gary Strand</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1743">Andrew Wittenberg</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1744">George White</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1745">Remik Ziemlinski</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Peter Campbell, Martin Dix, Mark Flanner, Markus Liebig, Keith Lindsay, Mike Page, Martin Schmidt, Michael Schulz, Lori Sentman, Rich Signell, Gary Strand, George White Andrew Wittenberg, Remik Ziemlinski</itemformat></item>
-</tableterm><tableitem><para>Excellent bug reports and feature requests.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1746">Daniel Baumann</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1747">Nick Bower</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1748">Luk Claes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1749">Barry deFreese</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1750">Aleksandar Jelenak</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1751">Francesco Lovergine</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1752">Matej Vela</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Daniel Baumann, Nick Bower, Luk Claebs, Barry deFreese, Aleksandar Jelenak, Francesco Lovergine, Matej Vela</itemformat></item>
-</tableterm><tableitem><para>Debian packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1753">Patrice Dumas</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1754">Ed Hill</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1755">Orion Powlawski</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Patrice Dumas, Ed Hill, Orion Poplawski</itemformat></item>
-</tableterm><tableitem><para>RedHat packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1756">George Shapavalov</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1757">Patrick Kursawe</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">George Shapavalov, Patrick Kursawe</itemformat></item>
-</tableterm><tableitem><para>Gentoo packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1758">Filipe Fernandes</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Filipe Fernandes</itemformat></item>
-</tableterm><tableitem><para>OpenSuse packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1759">Alexander Hansen</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1760">Takeshi Enomoto</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Takeshi Enomoto, Alexander Hansen</itemformat></item>
-</tableterm><tableitem><para>Mac OS packaging
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1761">Eric Blake</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Eric Blake</itemformat></item>
-</tableterm><tableitem><para>Autoconf/M4 help
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1762">Gavin Burris</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1763">Kyle Wilcox</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Gavin Burris, Kyle Wilcox</itemformat></item>
-</tableterm><tableitem><para>RHEL and CentOS build scripts and bug reports.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1764">Andrea Cimatoribus</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Andrea Cimatoribus</itemformat></item>
-</tableterm><tableitem><para><acronym><acronymword>NCO</acronymword></acronym> Spiral Logo
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1765">Martin Otte</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1766">Etienne Tourigny</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Martin Otte, Etienne Tourigny</itemformat></item>
-</tableterm><tableitem><para>Single bug reports and fixes
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1767">Wenshan Wang</indexterm></cindex>
-</para></tableitem></tableentry><tableentry><tableterm><item spaces=" "><itemformat command="asis">Wenshan Wang</itemformat></item>
-</tableterm><tableitem><para><acronym><acronymword>CMIP5</acronymword></acronym> and <acronym><acronymword>MODIS</acronymword></acronym> processing documentation.
-</para></tableitem></tableentry></table>
-<para>Please let me know if your name was omitted!
-</para>
-<html endspaces=" ">
-<a name="ctt"></a> <!&textndash; http://nco.sf.net/nco.html#ctt &textndash;>
-</html>
-</section>
-<node name="Citation" spaces=" "><nodename>Citation</nodename><nodenext spaces=" ">Proposals for Institutional Funding</nodenext><nodeprev spaces=" ">Contributors</nodeprev><nodeup spaces=" ">Contributing</nodeup></node>
-<section spaces=" "><sectiontitle>Citation</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1768">citation</indexterm></cindex>
-<para>The recommended citations for <acronym><acronymword>NCO</acronymword></acronym> software are
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-Zender, C. S. (2008), Analysis of Self-describing Gridded Geoscience
-Data with netCDF Operators (NCO), Environ. Modell. Softw., 23(10),
-1338-1342, doi:10.1016/j.envsoft.2008.03.004.
-
-Zender, C. S. (2014), netCDF Operator (NCO) User Guide, Version 4.4.3,
-http://nco.sf.net/nco.pdf.
-</verbatim>
-</example>
-<para>Use the former when referring to overall design, purpose, and
-optimization of <acronym><acronymword>NCO</acronymword></acronym>, and use the latter when referring to
-specific features and/or the User Guide itself.
-</para>
-<para>Additional information on citing <acronym><acronymword>NCO</acronymword></acronym> is in the User Guide at
-<url><urefurl>http://nco.sf.net#ctt</urefurl></url>.
-A complete list of <acronym><acronymword>NCO</acronymword></acronym> publications and presentations is at
-<url><urefurl>http://nco.sf.net#pub</urefurl></url>.
-This list links to the full papers and seminars themselves.
-</para>
-<html endspaces=" ">
-<a name="prp"></a> <!&textndash; http://nco.sf.net/nco.html#prp &textndash;>
-<a name="prp_sei"></a> <!&textndash; http://nco.sf.net/nco.html#prp_sei &textndash;>
-<a name="fnd"></a> <!&textndash; http://nco.sf.net/nco.html#fnd &textndash;>
-</html>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator=":: ">Proposals for Institutional Funding</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-</section>
-<node name="Proposals-for-Institutional-Funding" spaces=" "><nodename>Proposals for Institutional Funding</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Citation</nodeprev><nodeup spaces=" ">Contributing</nodeup></node>
-<section spaces=" "><sectiontitle>Proposals for Institutional Funding</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1769">funding</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1770">proposals</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1771"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1772">server-side processing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1773">Distributed Data Reduction & Analysis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1774">Scientific Data Operators</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1775"><acronym><acronymword>DDRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1776">Server-Side Distributed Data Reduction & Analysis</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1777"><acronym><acronymword>SSDDRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1778"><acronym><acronymword>CCSM</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1779"><acronym><acronymword>IPCC</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1780"><acronym><acronymword>NSF</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1781"><acronym><acronymword>SDO</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1782"><acronym><acronymword>SEIII</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1783">OptIPuter</indexterm></cindex>
-<para><acronym><acronymword>NSF</acronymword></acronym> has funded a
-<uref><urefurl>http://nco.sf.net#prp_sei</urefurl><urefdesc spaces=" ">project</urefdesc></uref>
-to improve Distributed Data Reduction & Analysis (<acronym><acronymword>DDRA</acronymword></acronym>) by
-evolving <acronym><acronymword>NCO</acronymword></acronym> into a suite of Scientific Data Operators called
-<acronym><acronymword>SDO</acronymword></acronym>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1784">parallelism</indexterm></cindex>
-The two main components of this project are <acronym><acronymword>NCO</acronymword></acronym> parallelism
-(OpenMP, <acronym><acronymword>MPI</acronymword></acronym>) and Server-Side <acronym><acronymword>DDRA</acronymword></acronym>
-(<acronym><acronymword>SSDDRA</acronymword></acronym>) implemented through extensions to <acronym><acronymword>OPeNDAP</acronymword></acronym>
-and netCDF4.
-This project will dramatically reduce bandwidth usage for <acronym><acronymword>NCO</acronymword></acronym>
-<acronym><acronymword>DDRA</acronymword></acronym>.
-</para>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1785"><acronym><acronymword>NASA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1786"><acronym><acronymword>NRA</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1787"><acronym><acronymword>HDF</acronymword></acronym></indexterm></cindex>
-<para>With this first <acronym><acronymword>NCO</acronymword></acronym> proposal funded, the content of the
-next <acronym><acronymword>NCO</acronymword></acronym> proposal is clear.
-We are interested in obtaining <acronym><acronymword>NASA</acronymword></acronym> support for
-<acronym><acronymword>HDF</acronymword></acronym>-specific enhancements to <acronym><acronymword>NCO</acronymword></acronym>.
-We plan to submit a proposal to the next suitable <acronym><acronymword>NASA</acronymword></acronym>
-<acronym><acronymword>NRA</acronymword></acronym> or <acronym><acronymword>NSF</acronymword></acronym> opportunity.
-</para>
-<para>We are considering other interesting ideas for still more proposals.
-Please contact us if you wish to be involved with any future
-<acronym><acronymword>NCO</acronymword></acronym>-related proposals.
-Comments on the proposals and letters of support are also very welcome.
-</para>
-<html endspaces=" ">
-<a name="quicksrt"></a> <!&textndash; http://nco.sf.net/nco.html#quicksrt &textndash;>
-</html>
-</section>
-</chapter>
-<node name="Quick-Start" spaces=" "><nodename>Quick Start</nodename><nodenext spaces=" ">CMIP5 Example</nodenext><nodeprev spaces=" ">Contributing</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Quick Start</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1788">Quick Start</indexterm></cindex>
-<para>Simple examples in Bash shell scripts showing how to average data with
-different file structures.
-Here we include monthly, seasonal and annual average with daily or
-monthly data in either one file or multiple files.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Daily data in one file</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Monthly data in one file</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">One time point one file</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Multiple files with multiple time points</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Daily-data-in-one-file" spaces=" "><nodename>Daily data in one file</nodename><nodenext spaces=" ">Monthly data in one file</nodenext><nodeprev spaces=" ">Quick Start</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
-<section spaces=" "><sectiontitle>Daily data in one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1789">daily data</indexterm></cindex>
-<para>Suppose we have daily data from Jan 1st, 1990 to Dec. 31, 2005 in the
-file of <file>in.nc</file> with the record dimension as <code>time</code>.
-</para>
-<noindent></noindent>
-<para><strong>Monthly average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1790">monthly average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1791">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1792">time-averaging</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for yyyy in {1990..2005}; do # Loop over years
- for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- # Average specific month yyyy-mm
- ncra -O -d time,"${yyyy}-${mm}-01","${yyyy}-${mm}-31" \
- in.nc in_${yyyy}${mm}.nc
- done
-done
-
-# Concatenate monthly files together
-ncrcat -O in_??????.nc out.nc
-</verbatim>
-</example>
-
-<noindent></noindent>
-<para><strong>Annual average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1793">annual average from daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1794">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1795">time-averaging</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for yyyy in {1990..2005}; do # Loop over years
- ncra -O -d time,"${yyyy}-01-01","${yyyy}-12-31" in.nc in_${yyyy}.nc
-done
-
-# Concatenate annual files together
-ncrcat -O in_????.nc out.nc
-</verbatim>
-</example>
-<para>The <option>-O</option> switch means to overwrite the pre-existing files (<pxref label="Batch-Mode"><xrefnodename>Batch Mode</xrefnodename></pxref>).
-The <option>-d</option> option is to specify the range of hyperslabs (<pxref label="Hyperslabs"><xrefnodename>Hyperslabs</xrefnodename></pxref>).
-There are detailed instructions on <command>ncra</command> (<pxref label="ncra-netCDF-Record-Averager"><xrefnodename>ncra netCDF Record Averager</xrefnodename></pxref> and <command>ncrcat</command> (<pxref label="ncrcat-netCDF-Record-Concatenator"><xrefnodename>ncrcat netCDF Record Concatenator</xrefnodename></pxref>).
-<acronym><acronymword>NCO</acronymword></acronym> supports UDUnits so that we can use readable dates as time dimension (<pxref label="UDUnits-Support"><xrefnodename>UDUnits Support</xrefnodename></pxref>).
-</para>
-</section>
-<node name="Monthly-data-in-one-file" spaces=" "><nodename>Monthly data in one file</nodename><nodenext spaces=" ">One time point one file</nodenext><nodeprev spaces=" ">Daily data in one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
-<section spaces=" "><sectiontitle>Monthly data in one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1796">monthly data</indexterm></cindex>
-<para>Inside the input file <file>in.nc</file>, the record dimension <code>time</code> is from Jan 1990 to Dec 2005.
-</para>
-<noindent></noindent>
-<para><strong>Seasonal average (e.g., DJF):</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1797">seasonal average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1798">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1799">time-averaging</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -O --mro -d time,"1990-12-01",,12,3 in.nc out.nc
-</pre></example>
-
-<noindent></noindent>
-<para><strong>Annual average:</strong>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1800">annual average from monthly data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1801">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1802">time-averaging</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -O --mro -d time,,,12,12 in.nc out.nc
-</pre></example>
-<para>Here we use the subcycle feature (i.e., the number after the fourth comma: <samp>3</samp> in the seasonal example and the second <samp>12</samp> in the annual example)
-to retrieve groups of records separated by regular intervals (<pxref label="Subcycle"><xrefnodename>Subcycle</xrefnodename></pxref>).
-The option <option>--mro</option> switches <command>ncra</command> to produce a Multi-Record Output instead of a single-record output.
-For example, assume <var>snd</var> is a 3D array with dimensions <code>time</code> * <code>latitude</code> * <code>longitude</code>
-and <code>time</code> includes every month from Jan. 1990 to Dec. 2005, 192 months as total, which are 16 years.
-Let&textrsquo;s look at the following two command lines.
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra --mro -v snd -d time,"1990-12-01",,12,3 in.nc out_mro.nc
-ncra -v snd -d time,"1990-12-01",,12,3 in.nc out_sro.nc
-</pre></example>
-<para>In the first output file, <file>out_mro.nc</file>, <var>snd</var> is still a 3D array with dimensions <code>time</code> * <code>latitude</code> * <code>longitude</code>,
-but the length of <code>time</code> now is 16, meaning 16 winters.
-In the second output file, <file>out_sro.nc</file>, the length of <code>time</code> is <w>only 1</w>.
-It is now the average of all the 16 winters.
-</para>
-<para>when using <samp>-d <var>dim</var>,min[,max]</samp> to specify the hyperslabs,
-you can leave it blank if you want to include the minimum or the maximum of the data, like we did above.
-</para>
-</section>
-<node name="One-time-point-one-file" spaces=" "><nodename>One time point one file</nodename><nodenext spaces=" ">Multiple files with multiple time points</nodenext><nodeprev spaces=" ">Monthly data in one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
-<section spaces=" "><sectiontitle>One time point one file</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1803">daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1804">monthly data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1805">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1806">time-averaging</indexterm></cindex>
-<para>This means if you have daily data of 30 days, there will be 30 data files.
-Or if you have monthly data of 12 months, there will be 12 data files.
-Dealing with this kind of files, you need to specify the file names in shell scripts and pass them to NCO operators.
-For example, your daily data files may look like <file>snd_19900101.nc</file>, <file>snd_19900102.nc</file>, <file>snd_19900103.nc</file> ...
-If you want to know the monthly average of Jan 1990, you can write like,
-</para><example endspaces=" ">
-<pre xml:space="preserve">ncra -O snd_199001??.nc out.nc
-</pre></example>
-<para>You might want to use loop if you need the average of each month.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-for moy in {1..12}; do # Loop over months
- mm=$( printf "%02d" ${moy} ) # Change to 2-digit format
-
- ncra -O snd_????${mm}??.nc out_${mm}.nc
-done
-</verbatim>
-</example>
-
-</section>
-<node name="Multiple-files-with-multiple-time-points" spaces=" "><nodename>Multiple files with multiple time points</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">One time point one file</nodeprev><nodeup spaces=" ">Quick Start</nodeup></node>
-<section spaces=" "><sectiontitle>Multiple files with multiple time points</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1807">daily data</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1808">monthly data</indexterm></cindex>
-<para>Similar as the last one, it&textrsquo;s more about shell scripts.
-Suppose you have daily data with one month of them in one data file.
-The monthly average is simply to apply <command>ncra</command> on the specific data file.
-And for seasonal averages, you can specify the three months by shell scripts.
-</para>
-<html endspaces=" ">
-<a name="cmip5"></a> <!&textndash; http://nco.sf.net/nco.html#cmip5 &textndash;>
-<a name="godad"></a> <!&textndash; http://nco.sf.net/nco.html#godad &textndash;>
-</html>
-</section>
-</chapter>
-<node name="CMIP5-Example" spaces=" "><nodename>CMIP5 Example</nodename><nodenext spaces=" ">Parallel</nodenext><nodeprev spaces=" ">Quick Start</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle><acronym><acronymword>CMIP5</acronymword></acronym> Example</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1809"><acronym><acronymword>CMIP5</acronymword></acronym></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1810"><acronym><acronymword>GODAD</acronymword></acronym></indexterm></cindex>
-<ignore>
-This @uref{http://nco.sf.net/xmp_cesm.html,Wonderful CMIP5 Documentation}
-shows complete processing of the @acronym{CMIP5} dataset.
-</ignore>
-
-<para>The fifth phase of the Coupled Model Intercomparison Project
-(<uref><urefurl>http://cmip-pcmdi.llnl.gov/cmip5/index.html?submenuheader=0</urefurl><urefdesc spaces=" "><acronym><acronymword>CMIP5</acronymword></acronym></urefdesc></uref>)
-provides a multi-model framework for comparing the mechanisms and
-responses of climate models from around the world.
-However, it is a tremendous workload to retrieve a single climate
-statistic from all these models, each of which includes several ensemble
-members.
-Not only that, it is too often a tedious process that impedes new
-research and hypothesis testing.
-Our <acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>ACCESS</acronymword></acronym> 2011 project simplified and
-accelerated this process.
-</para>
-<para>Traditional geoscience data analysis requires users to work with
-numerous flat (data in one level or namespace) files.
-In that paradigm instruments or models produce, and then repositories
-archive and distribute, and then researchers request and analyze,
-collections of flat files.
-<acronym><acronymword>NCO</acronymword></acronym> works well with that paradigm, yet it also embodies the
-necessary algorithms to transition geoscience data analysis from relying
-solely on traditional (or &textldquo;flat&textrdquo;) datasets to allowing newer
-hierarchical (or &textldquo;nested&textrdquo;) datasets.
-</para>
-<para>Hierarchical datasets support and enable combining all datastreams that
-meet user-specified criteria into a single or small number of files that
-hold <emph>all</emph> the science-relevant data.
-<acronym><acronymword>NCO</acronymword></acronym> (and no other software to our knowledge) exploits this
-capability now.
-Data and metadata may be aggregated into and analyzed in hierarchical
-structures.
-We call the resulting data storage, distribution, and analysis
-paradigm Group-Oriented Data Analysis and Distribution
-(<acronym><acronymword>GODAD</acronymword></acronym>).
-<acronym><acronymword>GODAD</acronymword></acronym> lets the scientific question organize the data, not the
-<emph>ad hoc</emph> granularity of all relevant datasets.
-This chapter illustrates <acronym><acronymword>GODAD</acronymword></acronym> techniques applied to
-analysis of the <acronym><acronymword>CMIP5</acronymword></acronym> dataset.
-</para>
-<para>To begin, we document below a prototypical example of <acronym><acronymword>CMIP5</acronymword></acronym>
-analysis and evaluation using traditional <acronym><acronymword>NCO</acronymword></acronym> commands on
-netCDF3-format model and <acronym><acronymword>HDF-EOS</acronymword></acronym> format observational
-(<acronym><acronymword>NASA</acronymword></acronym> <acronym><acronymword>MODIS</acronymword></acronym> satellite instrument) datasets.
-These examples complement the <acronym><acronymword>NCO</acronymword></acronym> User Guide by detailing
-in-depth data analysis in a frequently encountered &textldquo;real world&textrdquo;
-context.
-Graphical representations of the results (<acronym><acronymword>NCL</acronymword></acronym> scripts
-available upon request) are provided to illustrate physical meaning of
-the analysis.
-<ignore>
-In 2013 we added scripts which make use of new @acronym{NCO} features
-that combine all the loops in the analysis into single commands by
-exploiting @acronym{NCO}'s new group aggregation and arithmetic
-features.
-</ignore>
-Since <acronym><acronymword>NCO</acronymword></acronym> can process hierarchical datasets, i.e., datasets
-stored with netCDF4 groups, we present sample scripts illustrating
-group-based processing as well.
-</para>
-<menu endspaces=" ">
-<menuentry leadingtext="* "><menunode separator="::">Combine Files</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Global Distribution of Long-term Average</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Annual Average over Regions</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Monthly Cycle</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Regrid MODIS Data</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Add Coordinates to MODIS Data</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry><menuentry leadingtext="* "><menunode separator="::">Permute MODIS Coordinates</menunode><menudescription><pre xml:space="preserve">
-</pre></menudescription></menuentry></menu>
-
-<node name="Combine-Files" spaces=" "><nodename>Combine Files</nodename><nodenext spaces=" ">Global Distribution of Long-term Average</nodenext><nodeprev spaces=" ">CMIP5 Example</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Combine Files</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1811">file combination</indexterm></cindex>
-<para>Sometimes, the data of one ensemble member will be stored in several
-files to reduce single file size.
-It is more convenient to concatenate these files into a single
-timeseries, and the following script illustrates how.
-Key steps include:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Obtain number and names (or partial names) of files in a directory
-</para></listitem><listitem spaces=" "><para>Concatenate files along the record dimension (usually time) using
-<command>ncrcat</command> (<pxref label="ncrcat-netCDF-Record-Concatenator"><xrefnodename>ncrcat netCDF Record Concatenator</xrefnodename></pxref>).
-</para></listitem></enumerate>
-<example endspaces=" ">
-<verbatiminclude file="xmp/cmb_fl.sh" spaces=" ">xmp/cmb_fl.sh</verbatiminclude>
-</example>
-
-<para><acronym><acronymword>CMIP5</acronymword></acronym> model data downloaded from the Earth System Grid
-Federation (<uref><urefurl>http://pcmdi9.llnl.gov/esgf-web-fe/</urefurl><urefdesc spaces=" "><acronym><acronymword>ESGF</acronymword></acronym></urefdesc></uref>)
-does not contain group features yet.
-Therefore users must aggregate flat files into hierarchical ones themselves.
-The following script shows how.
-Each dataset becomes a group in the output file.
-There can be several levels of groups.
-In this example, we employ two experiments (&textldquo;scenarios&textrdquo;) as the top-level.
-The second-level comprises different models (e.g., CCSM4, CESM1-BGC).
-Many models are run multiple times with slight perturbed initial
-conditions to produce an ensemble of realizations.
-These ensemble members comprise the third level of the hierarchy.
-The script selects two variables, <var>snc</var> and <var>snd</var> (snow cover
-and snow depth).
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1812"><option>--gag</option></indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1813">aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1814">group aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1815">groups, creating</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/cmb_fl_grp.sh" spaces=" ">xmp/cmb_fl_grp.sh</verbatiminclude>
-</example>
-
-</section>
-<node name="Global-Distribution-of-Long_002dterm-Average" spaces=" "><nodename>Global Distribution of Long-term Average</nodename><nodenext spaces=" ">Annual Average over Regions</nodenext><nodeprev spaces=" ">Combine Files</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Global Distribution of Long-term Average</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1816">spatial distribution</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1817">long-term average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1818">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1819">time-averaging</indexterm></cindex>
-<float name="fgr_003aglb" type="Figure" number="7.1" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:glb</floatname>
-<image><imagefile>xmp/fgr1</imagefile><imagewidth>3.5in</imagewidth></image>
-<caption><para>Global Distribution of Long-term Average.</para></caption>
-</float>
-<noindent></noindent>
-<para>This section illustrates how to calculate the global distribution of
-long-term average (<pxref label="fgr_003aglb"><xrefnodename>fgr:glb</xrefnodename></pxref>) with either flat files or
-<uref><urefurl>http://nco.sourceforge.net/nco.html#index-groups</urefurl><urefdesc spaces=" ">group file</urefdesc></uref>.
-Key steps include:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Average ensemble members of each model using <command>nces</command> (<pxref label="nces-netCDF-Ensemble-Statistics"><xrefnodename>nces netCDF Ensemble Statistics</xrefnodename></pxref>)
-</para></listitem><listitem spaces=" "><para>Average the record dimension using <command>ncra</command> (<pxref label="ncra-netCDF-Record-Averager"><xrefnodename>ncra netCDF Record Averager</xrefnodename></pxref>)
-</para></listitem><listitem spaces=" "><para>Store results of each model as a distinct group in a single output file using <command>ncecat</command> (<pxref label="ncrcat-netCDF-Record-Concatenator"><xrefnodename>ncrcat netCDF Record Concatenator</xrefnodename></pxref>) with the <option>--gag</option> option
-</para></listitem></enumerate>
-<para>The first example shows how to process flat files.
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/glb_avg.sh" spaces=" ">xmp/glb_avg.sh</verbatiminclude>
-</example>
-
-<para>With the use of <key>group</key>, the above script will be shortened to <w>ONE LINE</w>.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1820">groups, averaging</indexterm></cindex>
-</para><example endspaces=" ">
-<pre xml:space="preserve"># Data from cmb_fl_grp.sh
-# ensemble averaging
-nces -O --nsm_grp --nsm_sfx='_avg' \
-sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc \
- sn_LImon_all-mdl_all-xpt_nsm-avg.nc
-</pre></example>
-<para>The input file, <file>sn_LImon_all-mdl_all-xpt_all-nsm_200001-200512.nc</file>, produced by <file>cmb_fl_grp.sh</file>,
-includes all the ensemble members as groups.
-The option <samp>--nsm_grp</samp> denotes
-that we are using <uref><urefurl>http://nco.sf.net/nco.html#nsm_grp</urefurl><urefdesc spaces=" ">group ensembles mode</urefdesc></uref> of <command>nces</command>,
-instead of <uref><urefurl>http://nco.sf.net/nco.html#nsm_fl</urefurl><urefdesc spaces=" ">file ensembles mode</urefdesc></uref>, <samp>--nsm_fl</samp>.
-The option <samp>--nsm_sfx='_avg'</samp> instructs <command>nces</command>
-to store the output as a new child group <file>/[model]/[model name]_avg/var</file>;
-otherwise, the output will be stored directly in the parent group <file>/[model]/var</file>.
-In the final output file, <file>sn_LImon_all-mdl_all-xpt_nsm-avg_tm-avg.nc</file>,
-sub-groups with a suffix of &textlsquo;avg&textrsquo; are the long-term averages of each model.
-One thing to notice is that for now,
-ensembles with only one ensemble member will be left untouched.
-</para>
-</section>
-<node name="Annual-Average-over-Regions" spaces=" "><nodename>Annual Average over Regions</nodename><nodenext spaces=" ">Monthly Cycle</nodenext><nodeprev spaces=" ">Global Distribution of Long-term Average</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Annual Average over Regions</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1821">annual average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1822">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1823">time-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1824">area-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1825">dimension order</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1826">anomalies</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1827">standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1828">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1829">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1830">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1831">attributes, overwriting</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1832">regression</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1833">nco script file</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1834">variables, appending</indexterm></cindex>
-<float name="fgr_003aanl" type="Figure" number="7.2" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:anl</floatname>
-<image><imagefile>xmp/fgr2</imagefile><imagewidth>4in</imagewidth></image>
-<caption><para>Annual Average over Regions.</para></caption>
-</float>
-<noindent></noindent>
-<para>This section illustrates how to calculate the annual average over
-specific regions (<pxref label="fgr_003aanl"><xrefnodename>fgr:anl</xrefnodename></pxref>).
-Key steps include:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Spatial average using <command>ncap2</command> (<pxref label="ncap2-netCDF-Arithmetic-Processor"><xrefnodename>ncap2 netCDF Arithmetic Processor</xrefnodename></pxref>) and <command>ncwa</command> (<pxref label="ncwa-netCDF-Weighted-Averager"><xrefnodename>ncwa netCDF Weighted Averager</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Change dimension order using <command>ncpdq</command> (<pxref label="ncpdq-netCDF-Permute-Dimensions-Quickly"><xrefnodename>ncpdq netCDF Permute Dimensions Quickly</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Annual average using <command>ncra</command> (<pxref label="ncra-netCDF-Record-Averager"><xrefnodename>ncra netCDF Record Averager</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Anomaly from long-term average using <command>ncbo</command> (<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Standard deviation using <command>ncbo</command> (<pxref label="ncbo-netCDF-Binary-Operator"><xrefnodename>ncbo netCDF Binary Operator</xrefnodename></pxref>) and <command>nces</command> (<pxref label="nces-netCDF-Ensemble-Statistics"><xrefnodename>nces netCDF Ensemble Statistics</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Rename variables using <command>ncrename</command> (<pxref label="ncrename-netCDF-Renamer"><xrefnodename>ncrename netCDF Renamer</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Edit attributions using <command>ncatted</command> (<pxref label="ncatted-netCDF-Attribute-Editor"><xrefnodename>ncatted netCDF Attribute Editor</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Linear regression using <command>ncap2</command> (<pxref label="ncap2-netCDF-Arithmetic-Processor"><xrefnodename>ncap2 netCDF Arithmetic Processor</xrefnodename></pxref>);
-</para></listitem><listitem spaces=" "><para>Use <command>ncap2</command> (<pxref label="ncap2-netCDF-Arithmetic-Processor"><xrefnodename>ncap2 netCDF Arithmetic Processor</xrefnodename></pxref>) with nco script file (i.e., <file>.nco</file> file);
-</para></listitem><listitem spaces=" "><para>Move variables around using <command>ncks</command> (<pxref label="ncks-netCDF-Kitchen-Sink"><xrefnodename>ncks netCDF Kitchen Sink</xrefnodename></pxref>).
-</para></listitem></enumerate>
-<para><strong>Flat files example</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/ann_avg.sh" spaces=" ">xmp/ann_avg.sh</verbatiminclude>
-</example>
-<para><strong>gsl_rgr.nco</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/gsl_rgr.nco" spaces=" ">xmp/gsl_rgr.nco</verbatiminclude>
-</example>
-
-<para>With the <key>group</key> feature,
-all the loops over experiments, models and ensemble members can be omitted.
-As we are working on implementing <key>group</key> feature in all <acronym><acronymword>NCO</acronymword></acronym> operators,
-some functions (e.g., regression and standard deviation over ensemble members)
-may have to wait until the new versions.
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1835">group, spatial averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1836">group, temporal averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1837">group, anomaly</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1838">group, standard deviation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1839">group, aggregation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1840">group, dimension permutation</indexterm></cindex>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/ann_avg_grp.sh" spaces=" ">xmp/ann_avg_grp.sh</verbatiminclude>
-</example>
-
-</section>
-<node name="Monthly-Cycle" spaces=" "><nodename>Monthly Cycle</nodename><nodenext spaces=" ">Regrid MODIS Data</nodenext><nodeprev spaces=" ">Annual Average over Regions</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Monthly Cycle</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1841">monthly average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1842">average</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1843">time-averaging</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1844">anomalies</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1845">geographical weight</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1846">weighted average</indexterm></cindex>
-<float name="fgr_003amon" type="Figure" number="7.3" spaces=" " endspaces=" "><floattype>Figure</floattype><floatname>fgr:mon</floatname>
-<image><imagefile>xmp/fgr3</imagefile><imagewidth>4in</imagewidth></image>
-<caption><para>Monthly Cycle.</para></caption>
-</float>
-<noindent></noindent>
-<para>This script illustrates how to calculate the monthly anomaly from the
-annual average (<pxref label="fgr_003amon"><xrefnodename>fgr:mon</xrefnodename></pxref>).
-In order to keep only the monthly cycle,
-we will subtract the annual average of each year from the monthly data,
-instead of subtracting the long-term average.
-This is a little more complicated in coding since we need to loop over years.
-</para>
-<para><strong>Flat files example</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/mcc.sh" spaces=" ">xmp/mcc.sh</verbatiminclude>
-</example>
-<para>Using <key>group</key> feature and <uref><urefurl>http://nco.sourceforge.net/nco.html#Hyperslabs</urefurl><urefdesc spaces=" ">hyperslabs</urefdesc></uref> of <command>ncbo</command>,
-the script will be shortened.
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/mcc_grp.sh" spaces=" ">xmp/mcc_grp.sh</verbatiminclude>
-</example>
-
-</section>
-<node name="Regrid-MODIS-Data" spaces=" "><nodename>Regrid MODIS Data</nodename><nodenext spaces=" ">Add Coordinates to MODIS Data</nodenext><nodeprev spaces=" ">Monthly Cycle</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Regrid <acronym><acronymword>MODIS</acronymword></acronym> Data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1847">regrid</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1848">MODIS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1849">bilinear interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1850">interpolation</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1851">renaming variables</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1852">renaming attributes</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1853">renaming dimensions</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1854">attributes, editing</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1855">attributes, modifying</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1856">attributes, overwriting</indexterm></cindex>
-<para>In order to compare the results between <acronym><acronymword>MODIS</acronymword></acronym> and
-<acronym><acronymword>CMIP5</acronymword></acronym> models, one usually regrids one or both datasets so
-that the spatial resolutions match.
-Here, the script illustrates how to regrid <acronym><acronymword>MODIS</acronymword></acronym> data.
-Key steps include:
-</para><enumerate first="1" endspaces=" ">
-<listitem spaces=" "><para>Regrid using bilinear interpolation (<pxref label="Bilinear-interpolation"><xrefnodename>Bilinear interpolation</xrefnodename></pxref>)
-</para></listitem><listitem spaces=" "><para>Rename variables, dimensions and attributions using <command>ncrename</command> (<pxref label="ncrename-netCDF-Renamer"><xrefnodename>ncrename netCDF Renamer</xrefnodename></pxref>).
-</para></listitem></enumerate>
-<para><strong>Main Script</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/rgr.sh" spaces=" ">xmp/rgr.sh</verbatiminclude>
-</example>
-<para><strong>bi_interp.nco</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/bi_interp.nco" spaces=" ">xmp/bi_interp.nco</verbatiminclude>
-</example>
-
-</section>
-<node name="Add-Coordinates-to-MODIS-Data" spaces=" "><nodename>Add Coordinates to MODIS Data</nodename><nodenext spaces=" ">Permute MODIS Coordinates</nodenext><nodeprev spaces=" ">Regrid MODIS Data</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Add Coordinates to <acronym><acronymword>MODIS</acronymword></acronym> Data</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1857">MODIS</indexterm></cindex>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1858">coordinates</indexterm></cindex>
-<para><strong>Main Script</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/add_crd.sh" spaces=" ">xmp/add_crd.sh</verbatiminclude>
-</example>
-<para><strong>crd.nco</strong>
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/crd.nco" spaces=" ">xmp/crd.nco</verbatiminclude>
-</example>
-
-</section>
-<node name="Permute-MODIS-Coordinates" spaces=" "><nodename>Permute MODIS Coordinates</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">Add Coordinates to MODIS Data</nodeprev><nodeup spaces=" ">CMIP5 Example</nodeup></node>
-<section spaces=" "><sectiontitle>Permute <acronym><acronymword>MODIS</acronymword></acronym> Coordinates</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1859">coordinates, modifying</indexterm></cindex>
-<!-- c NB: 20140130: @textdegree is in TeXInfo 4.12 but Mac OS X 10.8 ships with 4.8 -->
-<para><acronym><acronymword>MODIS</acronymword></acronym> orders latitude data from 90°N to
--90°N, and longitude from -180°E to
-180°E.
-However, <acronym><acronymword>CMIP5</acronymword></acronym> orders latitude from -90°N to
-90°N, and longitude from 0°E to
-360°E.
-This script changes the <acronym><acronymword>MODIS</acronymword></acronym> coordinates to follow the
-<acronym><acronymword>CMIP5</acronymword></acronym> convention.
-</para><example endspaces=" ">
-<verbatiminclude file="xmp/pmt_crd.sh" spaces=" ">xmp/pmt_crd.sh</verbatiminclude>
-</example>
-
-<ignore>
- at node Hierarchical Data Files, Parallel, CMIP5 Example, Top
-section Hierarchical Data Files
- at cindex hierarchical data
- at cindex groups
-Hierarchical Data Files support arbitrarily nested groups.
-The following @acronym{NCO} operators now can work recursively through all groups:
- at itemize @bullet
- at item @command{ncbo} (@pxref{ncbo netCDF Binary Operator})
- at item @command{ncecat} (@pxref{ncecat netCDF Ensemble Concatenator})
- at item @command{ncks} (@pxref{ncks netCDF Kitchen Sink})
- at item @command{ncpdq} (@pxref{ncpdq netCDF Permute Dimensions Quickly})
- at item @command{ncwa} (@pxref{ncwa netCDF Weighted Averager})
- at end itemize
-Here is an example showing:
- at enumerate
- at item How to create a hierarchical data file from multiple files using @command{ncecat} (@pxref{ncecat netCDF Ensemble Concatenator}) or @command{ncks} (@pxref{ncks netCDF Kitchen Sink});
- at item Hyperslabs using @command{ncks} (@pxref{ncks netCDF Kitchen Sink});
- at item Spatial average and time average using @command{ncwa} (@pxref{ncwa netCDF Weighted Averager});
- at item Anomaly from average using @command{ncbo} (@pxref{ncbo netCDF Binary Operator}).
- at end enumerate
- at example
- at verbatiminclude xmp/grp.sh
- at end example
-</ignore>
-
-<html endspaces=" ">
-<a name="parallel"></a> <!&textndash; http://nco.sf.net/nco.html#parallel &textndash;>
-</html>
-</section>
-</chapter>
-<node name="Parallel" spaces=" "><nodename>Parallel</nodename><nodenext spaces=" ">CCSM Example</nodenext><nodeprev spaces=" ">CMIP5 Example</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>Parallel</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1860"><command>parallel</command></indexterm></cindex>
-<para>This section will describe scripting strategies, including the use of
-<acronym><acronymword>GNU</acronymword></acronym> Parallel, to <acronym><acronymword>NCO</acronymword></acronym>.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-ls *historical*.nc | parallel ncks -O -d time,"1950-01-01","2000-01-01" {} 50y/{}
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="ccsm"></a> <!&textndash; http://nco.sf.net/nco.html#ccsm &textndash;>
-</html>
-</chapter>
-<node name="CCSM-Example" spaces=" "><nodename>CCSM Example</nodename><nodenext spaces=" ">mybibnode</nodenext><nodeprev spaces=" ">Parallel</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>CCSM Example</sectiontitle>
-<cindex index="cp" spaces=" "><indexterm index="cp" number="1861">CCSM</indexterm></cindex>
-
-<para>This chapter illustrates how to use <acronym><acronymword>NCO</acronymword></acronym> to
-process and analyze the results of a <acronym><acronymword>CCSM</acronymword></acronym> climate simulation.
-</para><example endspaces=" ">
-<verbatim xml:space="preserve">
-************************************************************************
-Task 0: Finding input files
-x************************************************************************
-The CCSM model outputs files to a local directory like:
-
-/ptmp/zender/archive/T42x1_40
-
-Each component model has its own subdirectory, e.g.,
-
-/ptmp/zender/archive/T42x1_40/atm
-/ptmp/zender/archive/T42x1_40/cpl
-/ptmp/zender/archive/T42x1_40/ice
-/ptmp/zender/archive/T42x1_40/lnd
-/ptmp/zender/archive/T42x1_40/ocn
-
-within which model output is tagged with the particular model name
-
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-01.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-02.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-03.nc
-...
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0001-12.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-01.nc
-/ptmp/zender/archive/T42x1_40/atm/T42x1_40.cam2.h0.0002-02.nc
-...
-
-or
-
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-01.nc
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-02.nc
-/ptmp/zender/archive/T42x1_40/lnd/T42x1_40.clm2.h0.0001-03.nc
-...
-
-************************************************************************
-Task 1: Regional processing
-************************************************************************
-The first task in data processing is often creating seasonal cycles.
-Imagine a 100-year simulation with its 1200 monthly mean files.
-Our goal is to create a single file containing 12 months of data.
-Each month in the output file is the mean of 100 input files.
-
-Normally, we store the "reduced" data in a smaller, local directory.
-
-caseid='T42x1_40'
-#drc_in="${DATA}/archive/${caseid}/atm"
-drc_in="${DATA}/${caseid}"
-drc_out="${DATA}/${caseid}"
-mkdir -p ${drc_out}
-cd ${drc_out}
-
-Method 1: Assume all data in directory applies
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.*-${mm}.nc
-done # end loop over mth
-
-Method 2: Use shell 'globbing' to construct input filenames
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.00??-${mm}.nc \
- ${drc_in}/${caseid}.cam2.h0.0100-${mm}.nc
-done # end loop over mth
-
-Method 3: Construct input filename list explicitly
-for mth in {1..12}; do
- mm=`printf "%02d" $mth`
- fl_lst_in=''
- for yr in {1..100}; do
- yyyy=`printf "%04d" $yr`
- fl_in=${caseid}.cam2.h0.${yyyy}-${mm}.nc
- fl_lst_in="${fl_lst_in} ${caseid}.cam2.h0.${yyyy}-${mm}.nc"
- done # end loop over yr
- ncra -O -D 1 -o ${drc_out}/${caseid}_clm${mm}.nc -p ${drc_in} \
- ${fl_lst_in}
-done # end loop over mth
-
-Make sure the output file averages correct input files!
-ncks -M prints global metadata:
-
- ncks -M ${drc_out}/${caseid}_clm01.nc
-
-The input files ncra used to create the climatological monthly mean
-will appear in the global attribute named 'history'.
-
-Use ncrcat to aggregate the climatological monthly means
-
- ncrcat -O -D 1 \
- ${drc_out}/${caseid}_clm??.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Finally, create climatological means for reference.
-The climatological time-mean:
-
- ncra -O -D 1 \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm.nc
-
-The climatological zonal-mean:
-
- ncwa -O -D 1 -a lon \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_x.nc
-
-The climatological time- and spatial-mean:
-
- ncwa -O -D 1 -a lon,lat,time -w gw \
- ${drc_out}/${caseid}_clm.nc ${drc_out}/${caseid}_clm_xyt.nc
-
-This file contains only scalars, e.g., "global mean temperature",
-used for summarizing global results of a climate experiment.
-
-Climatological monthly anomalies = Annual Cycle:
-Subtract climatological mean from climatological monthly means.
-Result is annual cycle, i.e., climate-mean has been removed.
-
- ncbo -O -D 1 -o ${drc_out}/${caseid}_clm_0112_anm.nc \
- ${drc_out}/${caseid}_clm_0112.nc ${drc_out}/${caseid}_clm_xyt.nc
-
-************************************************************************
-Task 2: Correcting monthly averages
-************************************************************************
-The previous step appoximates all months as being equal, so, e.g.,
-February weighs slightly too much in the climatological mean.
-This approximation can be removed by weighting months appropriately.
-We must add the number of days per month to the monthly mean files.
-First, create a shell variable dpm:
-
-unset dpm # Days per month
-declare -a dpm
-dpm=(0 31 28.25 31 30 31 30 31 31 30 31 30 31) # Allows 1-based indexing
-
-Method 1: Create dpm directly in climatological monthly means
-for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -s "dpm=0.0*date+${dpm[${mth}]}" \
- ${drc_out}/${caseid}_clm${mm}.nc ${drc_out}/${caseid}_clm${mm}.nc
-done # end loop over mth
-
-Method 2: Create dpm by aggregating small files
-for mth in {1..12}; do
- mm=`printf "%02d" ${mth}`
- ncap2 -O -v -s "dpm=${dpm[${mth}]}" ~/nco/data/in.nc \
- ${drc_out}/foo_${mm}.nc
-done # end loop over mth
-ncecat -O -D 1 -p ${drc_out} -n 12,2,2 foo_${mm}.nc foo.nc
-ncrename -O -D 1 -d record,time ${drc_out}/foo.nc
-ncatted -O -h \
- -a long_name,dpm,o,c,"Days per month" \
- -a units,dpm,o,c,"days" \
- ${drc_out}/${caseid}_clm_0112.nc
-ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Method 3: Create small netCDF file using ncgen
-cat > foo.cdl << 'EOF'
-netcdf foo {
-dimensions:
- time=unlimited;
-variables:
- float dpm(time);
- dpm:long_name="Days per month";
- dpm:units="days";
-data:
- dpm=31,28.25,31,30,31,30,31,31,30,31,30,31;
-}
-EOF
-ncgen -b -o foo.nc foo.cdl
-ncks -A -v dpm ${drc_out}/foo.nc ${drc_out}/${caseid}_clm_0112.nc
-
-Another way to get correct monthly weighting is to average daily
-output files, if available.
-
-************************************************************************
-Task 3: Regional processing
-************************************************************************
-Let's say you are interested in examining the California region.
-Hyperslab your dataset to isolate the appropriate latitude/longitudes.
-
-ncks -O -D 1 -d lat,30.0,37.0 -d lon,240.0,270.0 \
- ${drc_out}/${caseid}_clm_0112.nc \
- ${drc_out}/${caseid}_clm_0112_Cal.nc
-
-The dataset is now much smaller!
-To examine particular metrics.
-
-************************************************************************
-Task 4: Accessing data stored remotely
-************************************************************************
-OPeNDAP server examples:
-
-UCI DAP servers:
-ncks -M -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata in.nc
-ncrcat -O -C -D 3 \
- -p http://dust.ess.uci.edu/cgi-bin/dods/nph-dods/dodsdata \
- -l /tmp in.nc in.nc ~/foo.nc
-
-Unidata DAP servers:
-ncks -M -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
-ncrcat -O -C -D 3 \
- -p http://thredds-test.ucar.edu/thredds/dodsC/testdods \
- -l /tmp in.nc in.nc ~/foo.nc
-
-NOAA DAP servers:
-ncwa -O -C -a lat,lon,time -d lon,-10.,10. -d lat,-10.,10. -l /tmp -p \
-http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis.dailyavgs/surface \
-pres.sfc.1969.nc ~/foo.nc
-
-LLNL PCMDI IPCC OPeNDAP Data Portal:
-ncks -M -p http://username:password@esgcet.llnl.gov/cgi-bin/dap-cgi.py/ipcc4/sresa1b/ncar_ccsm3_0 pcmdi.ipcc4.ncar_ccsm3_0.sresa1b.run1.atm.mo.xml
-
-Earth System Grid (ESG): http://www.earthsystemgrid.org
-
-caseid='b30.025.ES01'
-CCSM3.0 1% increasing CO2 run, T42_gx1v3, 200 years starting in year 400
-Atmospheric post-processed data, monthly averages, e.g.,
-/data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0449-12.nc
-/data/zender/tmp/b30.025.ES01.cam2.h0.TREFHT.0400-01_cat_0599-12.nc
-
-ESG supports password-protected FTP access by registered users
-NCO uses the .netrc file, if present, for password-protected FTP access
-Syntax for accessing single file is, e.g.,
-ncks -O -D 3 \
- -p ftp://climate.llnl.gov/sresa1b/atm/mo/tas/ncar_ccsm3_0/run1 \
- -l /tmp tas_A1.SRESA1B_1.CCSM.atmm.2000-01_cat_2099-12.nc ~/foo.nc
-
-# Average surface air temperature tas for SRESA1B scenario
-# This loop is illustrative and will not work until NCO correctly
-# translates '*' to FTP 'mget' all remote files
-for var in 'tas'; do
-for scn in 'sresa1b'; do
-for mdl in 'cccma_cgcm3_1 cccma_cgcm3_1_t63 cnrm_cm3 csiro_mk3_0 \
-gfdl_cm2_0 gfdl_cm2_1 giss_aom giss_model_e_h giss_model_e_r \
-iap_fgoals1_0_g inmcm3_0 ipsl_cm4 miroc3_2_hires miroc3_2_medres \
-miub_echo_g mpi_echam5 mri_cgcm2_3_2a ncar_ccsm3_0 ncar_pcm1 \
-ukmo_hadcm3 ukmo_hadgem1'; do
-for run in '1'; do
- ncks -R -O -D 3 -p ftp://climate.llnl.gov/${scn}/atm/mo/${var}/${mdl}/run${run} -l ${DATA}/${scn}/atm/mo/${var}/${mdl}/run${run} '*' ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-done # end loop over run
-done # end loop over mdl
-done # end loop over scn
-done # end loop over var
-
-cd sresa1b/atm/mo/tas/ukmo_hadcm3/run1/
-ncks -H -m -v lat,lon,lat_bnds,lon_bnds -M tas_A1.nc | m
-bds -x 096 -y 073 -m 33 -o ${DATA}/data/dst_3.75x2.5.nc # ukmo_hadcm3
-ncview ${DATA}/data/dst_3.75x2.5.nc
-
-# msk_rgn is California mask on ukmo_hadcm3 grid
-# area is correct area weight on ukmo_hadcm3 grid
-ncks -A -v area,msk_rgn ${DATA}/data/dst_3.75x2.5.nc \
-${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/area_msk_ukmo_hadcm3.nc
-
-Template for standardized data:
-${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-e.g., raw data
-${DATA}/sresa1b/atm/mo/tas/ukmo_hadcm3/run1/tas_A1.nc
-becomes standardized data
-
-Level 0: raw from IPCC site--no changes except for name
- Make symbolic link name match raw data
-Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-ln -s -f tas_A1.nc sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc
-area_msk_ukmo_hadcm3.nc
-
-Level I: Add all variables (not standardized in time)
- to file containing msk_rgn and area
-Template: ${scn}_${mdl}_${run}_${yyyymm}_${yyyymm}.nc
-
-/bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v tas sresa1b_ukmo_hadcm3_run1_tas_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v pr sresa1b_ukmo_hadcm3_run1_pr_200101_209911.nc \
- sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
-If already have file then:
-mv sresa1b_ukmo_hadcm3_run1_200101_209911.nc foo.nc
-/bin/cp area_msk_ukmo_hadcm3.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-ncks -A -v tas,pr foo.nc sresa1b_ukmo_hadcm3_run1_200101_209911.nc
-
-Level II: Correct # years, months
-Template: ${scn}_${mdl}_${run}_${var}_${yyyymm}_${yyyymm}.nc
-
-ncks -d time,....... file1.nc file2.nc
-ncrcat file2.nc file3.nc sresa1b_ukmo_hadcm3_run1_200001_209912.nc
-
-Level III: Many derived products from level II, e.g.,
-
- A. Global mean timeseries
- ncwa -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy.nc
-
- B. Califoria average timeseries
- ncwa -m msk_rgn -w area -a lat,lon \
- sresa1b_ukmo_hadcm3_run1_200001_209912.nc \
- sresa1b_ukmo_hadcm3_run1_200001_209912_xy_Cal.nc
-</verbatim>
-</example>
-
-<html endspaces=" ">
-<a name="bibliography"></a> <!&textndash; http://nco.sf.net/nco.html#bibliography &textndash;>
-<a name="bib"></a> <!&textndash; http://nco.sf.net/nco.html#bib &textndash;>
-</html>
-</chapter>
-<node name="mybibnode" spaces=" "><nodename>mybibnode</nodename><nodenext spaces=" ">General Index</nodenext><nodeprev spaces=" ">CCSM Example</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<chapter spaces=" "><sectiontitle>References</sectiontitle>
-<itemize commandarg="bullet" endspaces=" ">
-<listitem><prepend>•</prepend>
-<anchor name="ZeM07">ZeM07</anchor><para>[ZeM07]
-<!-- c %**else if -->
- Zender, C. S., and H. J. Mangalam (2007), Scaling Properties of Common Statistical Operators for Gridded Datasets, Int. J. High Perform. Comput. Appl., 21(4), 485-498, doi:10.1177/1094342007083802.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="Zen08">Zen08</anchor><para>[Zen08]
-<!-- c %**else if -->
- Zender, C. S. (2008), Analysis of Self-describing Gridded Geoscience Data with netCDF Operators (NCO), Environ. Modell. Softw., 23(10), 1338-1342, doi:10.1016/j.envsoft.2008.03.004.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ07">WZJ07</anchor><para>[WZJ07]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender, and S. F. Jenks (2007), DAP-enabled Server-side Data Reduction and Analysis, Proceedings of the 23rd AMS Conference on Interactive Information and Processing Systems (IIPS) for Meteorology, Oceanography, and Hydrology, Paper 3B.2, January 14-18, San Antonio, TX. American Meteorological Society, AMS Press, Boston, MA.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="ZMW06">ZMW06</anchor><para>[ZMW06]
-<!-- c %**else if -->
- Zender, C. S., H. Mangalam, and D. L. Wang (2006), Improving Scaling Properties of Common Statistical Operators for Gridded Geoscience Datasets, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract IN53B-0827.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="ZeW07">ZeW07</anchor><para>[ZeW07]
-<!-- c %**else if -->
- Zender, C. S., and D. L. Wang (2007), High performance distributed data reduction and analysis with the netCDF Operators (NCO), Proceedings of the 23rd AMS Conference on Interactive Information and Processing Systems (IIPS) for Meteorology, Oceanography, and Hydrology, Paper 3B.4, January 14-18, San Antonio, TX. American Meteorological Society, AMS Press, Boston, MA.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ06">WZJ06</anchor><para>[WZJ06]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender, and S. F. Jenks (2006), Server-side netCDF Data Reduction and Analysis, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract IN53B-0826.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ073">WZJ073</anchor><para>[WZJ073]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender, and S. F. Jenks (2007), Server-side parallel data reduction and analysis, in Advances in Grid and Pervasive Computing, Second International Conference, GPC 2007, Paris, France, May 2-4, 2007, Proceedings. IEEE Lecture Notes in Computer Science, vol. 4459, edited by C. Cerin and K.-C. Li, pp. 744-750, Springer-Verlag, Berlin/Heidelberg, doi:10.1007/978-3-540-72360-8_67.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ074">WZJ074</anchor><para>[WZJ074]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender and S. F. Jenks (2007), A System for Scripted Data Analysis at Remote Data Centers, Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract IN11B-0469.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ081">WZJ081</anchor><para>[WZJ081]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender and S. F. Jenks (2008), Cluster Workflow Execution of Retargeted Data Analysis Scripts, Proceedings of the 8th IEEE Int&textrsquo;l Symposium on Cluster Computing and the Grid (IEEE CCGRID &textrsquo;08), pp. 449-458, Lyon, France, May 2008.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="WZJ091">WZJ091</anchor><para>[WZJ091]
-<!-- c %**else if -->
- Wang, D. L., C. S. Zender, and S. F. Jenks (2009), Efficient Clustered Server-side Data Analysis Workflows using SWAMP, Earth Sci. Inform., 2(3), 141-155, doi:10.1007/s12145-009-0021-z.
-</para></listitem><listitem><prepend>•</prepend>
-<anchor name="PFT88">PFT88</anchor><para>[PFT88]
-<!-- c %**else if -->
- Press, Flannery, Teukolsky, and Vetterling (1988), Numerical Recipes in C, Cambridge Univ. Press, New York, NY.
-</para></listitem></itemize>
-
-<!-- c @node Name Index, General Index, Operators, Top -->
-<!-- c @unnumbered Function and Variable Index -->
-
-<!-- c @printindex fn -->
-
-<html endspaces=" ">
-<a name="index"></a> <!&textndash; http://nco.sf.net/nco.html#index &textndash;>
-<a name="idx"></a> <!&textndash; http://nco.sf.net/nco.html#idx &textndash;>
-</html>
-</chapter>
-<node name="General-Index" spaces=" "><nodename>General Index</nodename><nodenext spaces=" "></nodenext><nodeprev spaces=" ">mybibnode</nodeprev><nodeup spaces=" ">Top</nodeup></node>
-<unnumbered spaces=" "><sectiontitle>General Index</sectiontitle>
-
-<syncodeindex from="fn" to="cp" line=" fn cp"></syncodeindex>
-<printindex value="cp" line=" cp"></printindex>
-
-<!-- c TTFN (Ta ta for now) -->
-</unnumbered>
-<bye></bye>
-</texinfo>
diff --git a/doc/nco_authors.txt b/doc/nco_authors.txt
new file mode 100644
index 0000000..84b320c
--- /dev/null
+++ b/doc/nco_authors.txt
@@ -0,0 +1,17 @@
+zender = Charlie Zender <zender at uci.edu>
+woodllan = Wenshan Wang <wenshanw at uci.edu>
+karkn = Karen Schuchardt <Karen.Schuchardt at pnl.gov>
+wangd = Daniel Wang <danielw at slac.stanford.edu>
+rorik = Rorik Peterson <ffrap1 at uaf.edu>
+edhill = Ed Hill <eh3 at mit.edu>
+mangalam = Harry Mangalam <hjm at tacgi.com>
+scapps = Scott Capps <scapps at atmos.ucla.edu>
+tlroche = Tom Roche <Tom_Roche at pobox.com>
+hmb = Henry Butowsky <henryb at hush.com>
+pvicente = Pedro Vicente <pedro.vicente at space-research.org>
+dywei2 = Dingying Wei <dywei at uci.edu>
+jedwards = Jim Edwards <jedwards at ucar.edu>
+gayathri_aiyar = Gayathri Venkitachalam <gvenkita at uci.edu>
+uid24006 = SourceForge uid24006 <zender at uci.edu>
+(no author) = Charlie Zender <workaround at dev.null>
+root = Charlie Zender <hack at dev.null>
diff --git a/doc/nco_ltr_spp.txt b/doc/nco_ltr_spp.txt
index 2d476cb..2164df5 100644
--- a/doc/nco_ltr_spp.txt
+++ b/doc/nco_ltr_spp.txt
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/doc/nco_ltr_spp.txt,v 1.3 2004/08/10 01:26:41 zender Exp $ -*-Text-*-
+$Header$ -*-Text-*-
# Purpose: Collection of endorsements for institutional NCO funding
diff --git a/doc/nco_news.shtml b/doc/nco_news.shtml
index 6f9a552..b0a1de2 100644
--- a/doc/nco_news.shtml
+++ b/doc/nco_news.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/nco_news.shtml,v 1.24 2014/10/13 15:35:04 zender Exp $
+<!-- $Header$
Purpose: NCO news archive
diff --git a/doc/nco_src_frg.txt b/doc/nco_src_frg.txt
index 9da9c3e..1da4378 100644
--- a/doc/nco_src_frg.txt
+++ b/doc/nco_src_frg.txt
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/nco_src_frg.txt,v 1.67 2014/10/13 15:35:04 zender Exp $ -*-text-*-
+# $Header$ -*-text-*-
# Purpose: Potpurri of Sourceforge information for NCO netCDF Operators project
diff --git a/doc/netcdf.h.3.6.3 b/doc/netcdf.h.3.6.3
index aa2a6d7..e3b4f13 100644
--- a/doc/netcdf.h.3.6.3
+++ b/doc/netcdf.h.3.6.3
@@ -30,7 +30,7 @@
* NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
-/* "$Id: netcdf.h.3.6.3,v 1.1 2014/09/15 16:27:16 zender Exp $" */
+/* "$Id$" */
#ifndef _NETCDF_
#define _NETCDF_
diff --git a/doc/opendap.sh b/doc/opendap.sh
index 3483be9..4ed7f94 100755
--- a/doc/opendap.sh
+++ b/doc/opendap.sh
@@ -1,6 +1,6 @@
#!/bin/sh
-# $Header: /cvsroot/nco/nco/doc/opendap.sh,v 1.17 2014/03/04 22:44:15 zender Exp $
+# $Header$
# Purpose: Install OPeNDAP prior to building NCO as DAP-enabled clients
diff --git a/doc/problems_old.shtml b/doc/problems_old.shtml
index 61f3ac0..b05f4a7 100644
--- a/doc/problems_old.shtml
+++ b/doc/problems_old.shtml
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/problems_old.shtml,v 1.2 2014/06/15 16:45:40 zender Exp $
+<!-- $Header$
Purpose: Problems archive
diff --git a/doc/valgrind.txt b/doc/valgrind.txt
index 67d9dc8..ccf54da 100644
--- a/doc/valgrind.txt
+++ b/doc/valgrind.txt
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/doc/valgrind.txt,v 1.5 2005/10/23 07:08:50 zender Exp $
+# $Header$
# Purpose: Suppression file for valgrind
# Default suppressed warnings in /usr/local/lib/valgrind/default.supp
diff --git a/doc/xmp_cesm.html b/doc/xmp_cesm.html
index 57a9cad..a21b247 100644
--- a/doc/xmp_cesm.html
+++ b/doc/xmp_cesm.html
@@ -1,4 +1,4 @@
-<!-- $Header: /cvsroot/nco/nco/doc/xmp_cesm.html,v 1.4 2013/12/02 01:05:56 zender Exp $
+<!-- $Header$
Purpose: NCO processing of CMIP5 and MODIS data
URL:
diff --git a/man/.gitignore b/man/.gitignore
new file mode 100644
index 0000000..625a53c
--- /dev/null
+++ b/man/.gitignore
@@ -0,0 +1,4 @@
+# Git-ignore patterns for ~/nco/man
+/Makefile
+
+/man1
diff --git a/man/Makefile.am b/man/Makefile.am
index 801a8f4..888c4a8 100644
--- a/man/Makefile.am
+++ b/man/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/man/Makefile.am,v 1.8 2014/01/21 21:57:45 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
man_MANS = ncap.1 ncap2.1 ncatted.1 ncbo.1 ncdiff.1 ncea.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1
EXTRA_DIST = $(man_MANS)
diff --git a/man/Makefile.in b/man/Makefile.in
index cc8586f..437a7f0 100644
--- a/man/Makefile.in
+++ b/man/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/man/Makefile.in,v 1.114 2015/01/07 18:07:24 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
@@ -175,6 +175,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/man/ncap.1 b/man/ncap.1
index cdf6477..a697032 100644
--- a/man/ncap.1
+++ b/man/ncap.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.23 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncap
.\" Usage:
.\" nroff -man ~/nco/man/ncap.1 | less
@@ -92,7 +92,7 @@ ncap \-s "T2=T*T" in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncap.1,v 1.23 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -105,7 +105,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncap2.1 b/man/ncap2.1
index 1dfaf4d..c49fe29 100644
--- a/man/ncap2.1
+++ b/man/ncap2.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.18 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncap2
.\" Usage:
.\" nroff -man ~/nco/man/ncap2.1 | less
@@ -96,7 +96,7 @@ ncap2 \-s "T2=T*T" in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncap2.1,v 1.18 2014/05/29 18:00:26 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -109,7 +109,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncatted.1 b/man/ncatted.1
index 93f196f..3435ae9 100644
--- a/man/ncatted.1
+++ b/man/ncatted.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncatted.1,v 1.15 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncatted
.\" Usage:
.\" nroff -man ~/nco/man/ncatted.1 | less
@@ -473,7 +473,7 @@ C-language escape sequences and other special characters like
backslashes and question marks.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncatted.1,v 1.15 2013/12/02 01:05:56 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/man/ncbo.1 b/man/ncbo.1
index 9c876c9..4ead63a 100644
--- a/man/ncbo.1
+++ b/man/ncbo.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.30 2015/02/09 07:38:06 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncbo
.\" Usage:
.\" nroff -man ~/nco/man/ncbo.1 | less
@@ -339,7 +339,7 @@ ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncbo.1,v 1.30 2015/02/09 07:38:06 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -352,7 +352,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncdiff.1 b/man/ncdiff.1
index 1b2d865..d6628f3 100644
--- a/man/ncdiff.1
+++ b/man/ncdiff.1
@@ -316,7 +316,7 @@ ncrcat t_anm_8589_??.nc t_anm_8589_0112.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncdiff.1,v 1.24 2014/12/31 01:50:06 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/man/ncea.1 b/man/ncea.1
index d834da8..cd73208 100644
--- a/man/ncea.1
+++ b/man/ncea.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.31 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncea
.\" Usage:
.\" nroff -man ~/nco/man/ncea.1 | less
@@ -139,7 +139,7 @@ input files.
Additionally, only data inside the tropics is included.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncea.1,v 1.31 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -152,7 +152,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncecat.1 b/man/ncecat.1
index 9c2989e..d3c9fc1 100644
--- a/man/ncecat.1
+++ b/man/ncecat.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncecat.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncecat
.\" Usage:
.\" nroff -man ~/nco/man/ncecat.1 | less
@@ -125,7 +125,7 @@ It contains 60 months of data (which might or might not be stored in the
record dimension, depending on the input files).
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncecat.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/man/nces.1 b/man/nces.1
index a83a375..aa087a3 100644
--- a/man/nces.1
+++ b/man/nces.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.7 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for nces
.\" Usage:
.\" nroff -man ~/nco/man/nces.1 | less
@@ -141,7 +141,7 @@ input files.
Additionally, only data inside the tropics is included.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/nces.1,v 1.7 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -154,7 +154,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncflint.1 b/man/ncflint.1
index 1284724..2c4a42d 100644
--- a/man/ncflint.1
+++ b/man/ncflint.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.28 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncflint
.\" Usage:
.\" nroff -man ~/nco/man/ncflint.1
@@ -85,7 +85,7 @@ are specified on the command line with the
or
.BR \-\-wgt_var
) switch. If only
-IR wgt1
+.IR wgt1
is specified then
.IR wgt2
is automatically computed as
@@ -156,11 +156,12 @@ is specified on the command line,
.B ncflint
defaults to weighting each input file equally in the output file. This
is equivalent to specifying
-.IR \-w 0.5
-or
-.IR \-w 0.5,0.5.
+.IR \-w
+0.5 or
+.IR \-w
+0.5,0.5.
Attempting to
-specify both .BR
+specify both
.BR \-i
and
.BR \-w
@@ -174,7 +175,7 @@ and
This behavior is hardcoded.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncflint.1,v 1.28 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -187,7 +188,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncks.1 b/man/ncks.1
index d1d58cd..935cd43 100644
--- a/man/ncks.1
+++ b/man/ncks.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.55 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncks
.\" Usage:
.\" nroff -man ~/nco/man/ncks.1 | less
@@ -332,7 +332,7 @@ lon(3)=180 lev(1)=100 lat(1)=\-90 three_dmn_var(3)=2
Printing a hyperslab does not affect the variable or dimension indices
since these indices are relative to the full variable (as stored in the
input file), and the input file has not changed.
-However, if the hypserslab is saved to an output file and those values
+However, if the hyperslab is saved to an output file and those values
are printed, the indices will change:
.RS
% ncks \-H \-d lat,90.0 \-d lev,1000.0 \-v three_dmn_var in.nc out.nc
@@ -599,7 +599,7 @@ ncks \-d lon,260.,45. in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncks.1,v 1.55 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/man/nco.1 b/man/nco.1
index f0463db..b5885f1 100644
--- a/man/nco.1
+++ b/man/nco.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.11 2014/09/15 14:49:29 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for nco
.\" Usage:
.\" nroff -man ~/nco/man/nco.1
@@ -113,7 +113,7 @@ special cases.
works well on all modern operating systems.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/nco.1,v 1.11 2014/09/15 14:49:29 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -126,7 +126,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncpdq.1 b/man/ncpdq.1
index e3d0f43..5bfcd41 100644
--- a/man/ncpdq.1
+++ b/man/ncpdq.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncpdq
.\" Usage:
.\" nroff -man ~/nco/man/ncpdq.1 | less
@@ -123,7 +123,7 @@ The specified re-ordering will fail if it requires creating more than
one record dimension amongst all the output variables.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncpdq.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -136,7 +136,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncra.1 b/man/ncra.1
index 7d63e0a..049dfd5 100644
--- a/man/ncra.1
+++ b/man/ncra.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.40 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncra
.\" Usage:
.\" nroff -man ~/nco/man/ncra.1 | less
@@ -150,7 +150,7 @@ ncra \-d time,6.,54. ??.nc 8506_8906.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncra.1,v 1.40 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -163,7 +163,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncrcat.1 b/man/ncrcat.1
index acbcdc6..4b96d30 100644
--- a/man/ncrcat.1
+++ b/man/ncrcat.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncrcat
.\" Usage:
.\" nroff -man ~/nco/man/ncrcat.1 | less
@@ -169,7 +169,7 @@ and finally to repack the result using
.B ncpdq.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncrcat.1,v 1.35 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -182,7 +182,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/man/ncrename.1 b/man/ncrename.1
index 13dc125..bff5ea7 100644
--- a/man/ncrename.1
+++ b/man/ncrename.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.20 2014/12/31 01:50:06 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncrename
.\" Usage:
.\" nroff -man ~/nco/man/ncrename.1 | less
@@ -191,7 +191,7 @@ ncrename \-a _FillValue,missing_value \-a Zaire,Congo in.nc out.nc
.RE
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncrename.1,v 1.20 2014/12/31 01:50:06 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
diff --git a/man/ncwa.1 b/man/ncwa.1
index 467bfae..8712434 100644
--- a/man/ncwa.1
+++ b/man/ncwa.1
@@ -1,4 +1,4 @@
-.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.34 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: ROFF man page for ncwa
.\" Usage:
.\" nroff -man ~/nco/man/ncwa.1 | less
@@ -208,7 +208,7 @@ The mathematical definition of operations involving rank reduction
is given above.
.\" NB: Append man_end.txt here
-.\" $Header: /cvsroot/nco/nco/man/ncwa.1,v 1.34 2015/02/09 23:29:38 zender Exp $ -*-nroff-*-
+.\" $Header$ -*-nroff-*-
.\" Purpose: Trailer file for common ending to NCO man pages
.\" Usage:
.\" Append this file to end of NCO man pages immediately after marker
@@ -221,7 +221,7 @@ manual pages written by Charlie Zender and originally formatted by Brian Mays.
Report bugs to <http://sf.net/bugs/?group_id=3331>.
.SH COPYRIGHT
-Copyright \(co 1995-2014 Charlie Zender
+Copyright \(co 1995-2015 Charlie Zender
.br
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
diff --git a/qt/libnco/libnco.pro b/qt/libnco/libnco.pro
index 4057f64..8a7b403 100644
--- a/qt/libnco/libnco.pro
+++ b/qt/libnco/libnco.pro
@@ -65,8 +65,10 @@ HEADERS += ../../src/nco/libnco.h \
../../src/nco/nco_netcdf.h \
../../src/nco/nco_omp.h \
../../src/nco/nco_pck.h \
+../../src/nco/nco_ppc.h \
../../src/nco/nco_prn.h \
../../src/nco/nco_rec_var.h \
+../../src/nco/nco_rgr.h \
../../src/nco/nco_rth_flt.h \
../../src/nco/nco_rth_utl.h \
../../src/nco/nco_scl_utl.h \
@@ -108,8 +110,10 @@ SOURCES += ../../src/nco/nco_att_utl.c \
../../src/nco/nco_netcdf.c \
../../src/nco/nco_omp.c \
../../src/nco/nco_pck.c \
+../../src/nco/nco_ppc.c \
../../src/nco/nco_prn.c \
../../src/nco/nco_rec_var.c \
+../../src/nco/nco_rgr.c \
../../src/nco/nco_rth_flt.c \
../../src/nco/nco_rth_utl.c \
../../src/nco/nco_scl_utl.c \
diff --git a/qt/libnco/libnco.vcxproj b/qt/libnco/libnco.vcxproj
index a0b0d3f..aece5d5 100644
--- a/qt/libnco/libnco.vcxproj
+++ b/qt/libnco/libnco.vcxproj
@@ -146,8 +146,10 @@
<ClCompile Include="..\..\src\nco\nco_netcdf.c" />
<ClCompile Include="..\..\src\nco\nco_omp.c" />
<ClCompile Include="..\..\src\nco\nco_pck.c" />
+ <ClCompile Include="..\..\src\nco\nco_ppc.c" />
<ClCompile Include="..\..\src\nco\nco_prn.c" />
<ClCompile Include="..\..\src\nco\nco_rec_var.c" />
+ <ClCompile Include="..\..\src\nco\nco_rgr.c" />
<ClCompile Include="..\..\src\nco\nco_rth_flt.c" />
<ClCompile Include="..\..\src\nco\nco_rth_utl.c" />
<ClCompile Include="..\..\src\nco\nco_scl_utl.c" />
@@ -191,8 +193,10 @@
<ClInclude Include="..\..\src\nco\nco_netcdf.h" />
<ClInclude Include="..\..\src\nco\nco_omp.h" />
<ClInclude Include="..\..\src\nco\nco_pck.h" />
+ <ClInclude Include="..\..\src\nco\nco_ppc.h" />
<ClInclude Include="..\..\src\nco\nco_prn.h" />
<ClInclude Include="..\..\src\nco\nco_rec_var.h" />
+ <ClInclude Include="..\..\src\nco\nco_rgr.h" />
<ClInclude Include="..\..\src\nco\nco_rth_flt.h" />
<ClInclude Include="..\..\src\nco\nco_rth_utl.h" />
<ClInclude Include="..\..\src\nco\nco_scl_utl.h" />
diff --git a/src/.gitignore b/src/.gitignore
new file mode 100644
index 0000000..55296b3
--- /dev/null
+++ b/src/.gitignore
@@ -0,0 +1,5 @@
+# Git-ignore patterns for ~/nco/src
+/Makefile
+
+# Created in all source sub-directories by configure->make test
+test-suite.log
diff --git a/src/Makefile.am b/src/Makefile.am
index d0e50b4..a122992 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,3 +1,3 @@
-# $Header: /cvsroot/nco/nco/src/Makefile.am,v 1.6 2006/08/26 05:03:28 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
SUBDIRS = nco @NCO_CXX@ @NCOXX@
diff --git a/src/Makefile.in b/src/Makefile.in
index 8c02b68..23aff6d 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/src/Makefile.in,v 1.112 2015/01/07 18:07:24 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
am__is_gnu_make = test -n '$(MAKEFILE_LIST)' && test -n '$(MAKELEVEL)'
am__make_running_with_option = \
@@ -204,6 +204,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/src/nco++/.gitignore b/src/nco++/.gitignore
new file mode 100644
index 0000000..a8d3a72
--- /dev/null
+++ b/src/nco++/.gitignore
@@ -0,0 +1,6 @@
+# Git-ignore patterns for ~/nco/src/nco++
+/Makefile
+/ncoParserTokenTypes.txt
+
+# Created locally by configure->make all
+/ncap2
diff --git a/src/nco++/Makefile.am b/src/nco++/Makefile.am
index f371867..b2ec224 100644
--- a/src/nco++/Makefile.am
+++ b/src/nco++/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco++/Makefile.am,v 1.30 2015/01/08 20:41:52 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
# Purpose: Template builds for nco++ directory
# Process this file with automake to produce Makefile.in
diff --git a/src/nco++/Makefile.in b/src/nco++/Makefile.in
index ca7cf8c..238386d 100644
--- a/src/nco++/Makefile.in
+++ b/src/nco++/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/src/nco++/Makefile.in,v 1.103 2015/01/08 20:41:52 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
# Purpose: Template builds for nco++ directory
# Process this file with automake to produce Makefile.in
@@ -225,6 +225,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/src/nco++/Makefile.old b/src/nco++/Makefile.old
index dcf90bc..072c437 100644
--- a/src/nco++/Makefile.old
+++ b/src/nco++/Makefile.old
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco++/Makefile.old,v 1.139 2015/02/04 22:45:08 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
# Purpose: Makefile for NCO C++ directory nco++
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -341,6 +341,15 @@ endif # endif GSL_LIB
endif # endif GSL_MINOR_VERSION
endif # end if GSL
+ifeq (${SZ},Y)
+# 20150515: -lsz needed (at least by icc) on rhea
+ifdef SZ_LIB
+ SZ_LIB_FLG := -L${SZ_LIB} -lsz
+else
+ SZ_LIB_FLG := -lsz
+endif # end if SZ_LIB
+endif # end if SZ
+
ifeq (${UDUNITS},Y)
# 20130607: -lexpat needed on .deb systems, not on RPM systems
ifdef UDUNITS_INC
@@ -373,7 +382,7 @@ ifdef LIB_NCAR
endif
OTHER_CFLAGS := ${NC_CFLAGS} ${MPI_CFLAGS} ${GSL_INC_FLG} ${UDUNITS_INC_FLG} ${ANTLR_INC}
-OTHER_LDFLAGS := ${NCO_LDFLAGS} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${UDUNITS_LIB_FLG} ${ANTLR_LIB}
+OTHER_LDFLAGS := ${NCO_LDFLAGS} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${SZ_LIB_FLG} ${UDUNITS_LIB_FLG} ${ANTLR_LIB}
# NB: Do NOT add comment lines, e.g., # This is a comma, to character definitions
null :=
diff --git a/src/nco++/fmc_all_cls.cc b/src/nco++/fmc_all_cls.cc
index 513dd70..f18af5f 100644
--- a/src/nco++/fmc_all_cls.cc
+++ b/src/nco++/fmc_all_cls.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/fmc_all_cls.cc,v 1.72 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor class methods: families of functions/methods */
@@ -3084,16 +3084,10 @@ double bil_cls::clc_lin_ipl(double x1,double x2, double x, double Q0,double Q1){
(void)cast_nctype_void(NC_DOUBLE,&var_out->val);
// change back to input type
var_out=nco_var_cnf_typ(in_typ,var_out);
-
return var_out;
+ } // end
-
- }// end
-
-
-
-/*****************************************************************************************************************/
/* ncap2 functions and methods */
/* To avoid confusion when I say FUNC (uppercase) I mean a custom ncap2 function.
@@ -3152,11 +3146,10 @@ double bil_cls::clc_lin_ipl(double x1,double x2, double x, double Q0,double Q1){
The most important methods are the following:
- // initialize var_sct with the variable snm
+ // initialize var_sct with the variable snm
var_sct *ncap_var_init(const std::string &snm, bool bfll);
// write var to disc
int ncap_var_write (var_sct *var, bool bram);
-
Perhaps the most important thing to grasp is that given a list of statements TWO PARSES of the script (syntax tree) are made.
In the first parse the vars are defined on disc. In the second parse the vars are populated.
@@ -3167,9 +3160,7 @@ double bil_cls::clc_lin_ipl(double x1,double x2, double x, double Q0,double Q1){
ncoParser - The main grammer - creates a syntax tree
ncoTree - Reads a syntax tree
- Hopefully the only thing you'll deal with here is the ncoTree methods
-
-/*****************************************************************************************************************/
+ Hopefully the only thing you'll deal with here is the ncoTree methods */
/*
Lets take a look at mth2_cls().
@@ -3185,8 +3176,4 @@ double bil_cls::clc_lin_ipl(double x1,double x2, double x, double Q0,double Q1){
It takes two fragments of the the parse tree ( expr, fargs) and returns a var_sct.
- If expr is null then it is A FUNC else its a METHOD
-
-
-
-*/
+ If expr is null then it is A FUNC else its a METHOD */
diff --git a/src/nco++/fmc_gsl_cls.cc b/src/nco++/fmc_gsl_cls.cc
index 598b7ca..0f9cf4e 100644
--- a/src/nco++/fmc_gsl_cls.cc
+++ b/src/nco++/fmc_gsl_cls.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/fmc_gsl_cls.cc,v 1.72 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor class methods for GSL */
diff --git a/src/nco++/libnco++.hh b/src/nco++/libnco++.hh
index 3cf5dce..4c5981e 100644
--- a/src/nco++/libnco++.hh
+++ b/src/nco++/libnco++.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco++/libnco++.hh,v 1.23 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Prototypes, typedefs, and global variables for libnco++
diff --git a/src/nco++/ncap2.cc b/src/nco++/ncap2.cc
index 9f92eeb..7a4d496 100644
--- a/src/nco++/ncap2.cc
+++ b/src/nco++/ncap2.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/ncap2.cc,v 1.203 2015/02/07 05:42:36 zender Exp $ */
+/* $Header$ */
/* ncap2 -- netCDF arithmetic processor */
@@ -144,8 +144,8 @@ main(int argc,char **argv)
char *spt_arg[NCAP_SPT_NBR_MAX]; /* fxm: Arbitrary size, should be dynamic */
char *spt_arg_cat=NULL_CEWI; /* [sng] User-specified script */
- const char * const CVS_Id="$Id: ncap2.cc,v 1.203 2015/02/07 05:42:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.203 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const att_nm_tmp="eulaVlliF_"; /* For netCDF4 name hack */
const char * const opt_sht_lst="3467ACcD:FfhL:l:n:Oo:p:Rrs:S:t:vx-:"; /* [sng] Single letter command line options */
@@ -653,7 +653,7 @@ main(int argc,char **argv)
} /* Existing file */
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Copy global attributes */
(void)nco_att_cpy(in_id,out_id,NC_GLOBAL,NC_GLOBAL,(nco_bool)True);
diff --git a/src/nco++/ncap2_utl.cc b/src/nco++/ncap2_utl.cc
index 5f874e3..cfe5200 100644
--- a/src/nco++/ncap2_utl.cc
+++ b/src/nco++/ncap2_utl.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/ncap2_utl.cc,v 1.165 2015/01/20 18:20:15 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor */
diff --git a/src/nco++/ncap2_utl.hh b/src/nco++/ncap2_utl.hh
index b1e7af7..70e68bd 100644
--- a/src/nco++/ncap2_utl.hh
+++ b/src/nco++/ncap2_utl.hh
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/ncap2_utl.hh,v 1.22 2014/12/08 16:05:06 hmb Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor definitions and function prototypes for ncap.c, ncap_utl.c, ncap_lex.l, and ncap_yacc.y */
/* Copyright (C) 1995--2014 Charlie Zender
diff --git a/src/nco++/ncoGrammer.g b/src/nco++/ncoGrammer.g
index 4fc8ada..12a2847 100644
--- a/src/nco++/ncoGrammer.g
+++ b/src/nco++/ncoGrammer.g
@@ -1,5 +1,5 @@
header {
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoGrammer.g,v 1.212 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
@@ -604,10 +604,11 @@ INCLUDE
{
// ANTLR_USING_NAMESPACE(std)
// create lexer to handle include
- std::string f_nm= f->getText();
- std::ifstream* input = new std::ifstream(f_nm.c_str());
- if (*input==NULL) {
- err_prn("Lexer cannot find include file "+ f_nm);
+ std::string f_nm=f->getText();
+ std::ifstream* input=new std::ifstream(f_nm.c_str());
+ if(!(*input)){
+ // if(*input==NULL){ // 20150413: Trips clang 6.0 MACOSX Yosemite warning from -Wnull-arithmetic and subsequent error "invalid operands to binary expression"
+ err_prn("Lexer cannot find include file "+f_nm);
}
ncoLexer* sublexer = new ncoLexer(*input,prs_arg);
// make sure errors are reported in right file
diff --git a/src/nco++/ncoLexer.cpp b/src/nco++/ncoLexer.cpp
index c554d61..34ea07d 100644
--- a/src/nco++/ncoLexer.cpp
+++ b/src/nco++/ncoLexer.cpp
@@ -2566,10 +2566,11 @@ void ncoLexer::mINCLUDE(bool _createToken) {
// ANTLR_USING_NAMESPACE(std)
// create lexer to handle include
- std::string f_nm= f->getText();
- std::ifstream* input = new std::ifstream(f_nm.c_str());
- if (*input==NULL) {
- err_prn("Lexer cannot find include file "+ f_nm);
+ std::string f_nm=f->getText();
+ std::ifstream* input=new std::ifstream(f_nm.c_str());
+ if(!(*input)){
+ // if(*input==NULL){ // 20150413: Trips clang 6.0 MACOSX Yosemite warning from -Wnull-arithmetic and subsequent error "invalid operands to binary expression"
+ err_prn("Lexer cannot find include file "+f_nm);
}
ncoLexer* sublexer = new ncoLexer(*input,prs_arg);
// make sure errors are reported in right file
@@ -2591,7 +2592,7 @@ void ncoLexer::mINCLUDE(bool _createToken) {
// of the new instance of this lexer.
selector.retry(); // throws TokenStreamRetryException
-#line 2595 "ncoLexer.cpp"
+#line 2596 "ncoLexer.cpp"
if ( _createToken && _token==ANTLR_USE_NAMESPACE(antlr)nullToken && _ttype!=ANTLR_USE_NAMESPACE(antlr)Token::SKIP ) {
_token = makeToken(_ttype);
_token->setText(text.substr(_begin, text.length()-_begin));
diff --git a/src/nco++/ncoLexer.hpp b/src/nco++/ncoLexer.hpp
index 33781fd..7cc4e42 100644
--- a/src/nco++/ncoLexer.hpp
+++ b/src/nco++/ncoLexer.hpp
@@ -10,7 +10,7 @@
#include <antlr/CharScanner.hpp>
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoLexer.hpp,v 1.144 2015/01/17 00:49:35 zender Exp $ */
+/* $Header$ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
diff --git a/src/nco++/ncoParser.hpp b/src/nco++/ncoParser.hpp
index 9364254..5d3f6cd 100644
--- a/src/nco++/ncoParser.hpp
+++ b/src/nco++/ncoParser.hpp
@@ -10,7 +10,7 @@
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoParser.hpp,v 1.140 2015/01/17 00:49:35 zender Exp $ */
+/* $Header$ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
diff --git a/src/nco++/ncoTree.cpp b/src/nco++/ncoTree.cpp
index 2716fb9..f7cd870 100644
--- a/src/nco++/ncoTree.cpp
+++ b/src/nco++/ncoTree.cpp
@@ -13,7 +13,7 @@ ncoTree::ncoTree()
}
int ncoTree::lmt_peek(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 972 "ncoGrammer.g"
+#line 973 "ncoGrammer.g"
int nbr_dmn=0;
#line 19 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST lmt_peek_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
@@ -24,7 +24,7 @@ int ncoTree::lmt_peek(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,LMT_LIST);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 974 "ncoGrammer.g"
+#line 975 "ncoGrammer.g"
RefAST aRef;
aRef=lmt->getFirstChild();
@@ -51,7 +51,7 @@ int ncoTree::lmt_peek(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
}
int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 985 "ncoGrammer.g"
+#line 986 "ncoGrammer.g"
int iret=0;
#line 57 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST statements_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
@@ -72,7 +72,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
ANTLR_USE_NAMESPACE(antlr)RefAST pvid = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST patt = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST pstr = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 985 "ncoGrammer.g"
+#line 986 "ncoGrammer.g"
var_sct *var=NULL;
var_sct *var2=NULL;
@@ -94,7 +94,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,BLOCK);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 995 "ncoGrammer.g"
+#line 996 "ncoGrammer.g"
//std::cout <<"Num of Children in block="<<blk->getNumberOfChildren()<<endl;
iret=run_exe(blk->getFirstChild(),lpp_vtr.size() );
@@ -116,7 +116,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t221;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1001 "ncoGrammer.g"
+#line 1002 "ncoGrammer.g"
RefAST tr;
RefAST ntr;
@@ -153,7 +153,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t222;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1025 "ncoGrammer.g"
+#line 1026 "ncoGrammer.g"
var=out(fss);
@@ -179,7 +179,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t223;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1033 "ncoGrammer.g"
+#line 1034 "ncoGrammer.g"
//if can have only 3 or 4 parts , 1 node and 2 or 3 siblings
// IF LOGICAL_EXP STATEMENT1 STATEMENT2
@@ -227,7 +227,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t224;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1063 "ncoGrammer.g"
+#line 1064 "ncoGrammer.g"
// convert mask to short
RefAST tr;
@@ -290,7 +290,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t225;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1107 "ncoGrammer.g"
+#line 1108 "ncoGrammer.g"
bool br;
@@ -344,7 +344,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t226;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1136 "ncoGrammer.g"
+#line 1137 "ncoGrammer.g"
bool b1,b2,b3,br;
var_sct *var_f1;
@@ -405,7 +405,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,ELSE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1187 "ncoGrammer.g"
+#line 1188 "ncoGrammer.g"
iret=ELSE;
#line 411 "ncoTree.cpp"
}
@@ -417,7 +417,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,BREAK);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1188 "ncoGrammer.g"
+#line 1189 "ncoGrammer.g"
iret=BREAK;
#line 423 "ncoTree.cpp"
}
@@ -429,7 +429,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,CONTINUE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1189 "ncoGrammer.g"
+#line 1190 "ncoGrammer.g"
iret=CONTINUE;
#line 435 "ncoTree.cpp"
}
@@ -441,7 +441,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,NULL_NODE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1190 "ncoGrammer.g"
+#line 1191 "ncoGrammer.g"
iret=NULL_NODE;
#line 447 "ncoTree.cpp"
}
@@ -527,7 +527,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t227;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1192 "ncoGrammer.g"
+#line 1193 "ncoGrammer.g"
bool bunlimited=false;
@@ -610,7 +610,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t232;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1234 "ncoGrammer.g"
+#line 1235 "ncoGrammer.g"
int var_id;
@@ -699,7 +699,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t236;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1281 "ncoGrammer.g"
+#line 1282 "ncoGrammer.g"
int apsn;
@@ -795,7 +795,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t240;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1336 "ncoGrammer.g"
+#line 1337 "ncoGrammer.g"
char *prn_sng;
@@ -829,7 +829,7 @@ int ncoTree::statements(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
}
var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 1885 "ncoGrammer.g"
+#line 1886 "ncoGrammer.g"
var_sct *var;
#line 835 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST out_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
@@ -863,7 +863,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
ANTLR_USE_NAMESPACE(antlr)RefAST val_uint = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST val_int64 = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST val_uint64 = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 1885 "ncoGrammer.g"
+#line 1886 "ncoGrammer.g"
const std::string fnc_nm("out");
var_sct *var1;
@@ -889,7 +889,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t308;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1912 "ncoGrammer.g"
+#line 1913 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, TIMES );
#line 895 "ncoTree.cpp"
}
@@ -908,7 +908,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t309;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1915 "ncoGrammer.g"
+#line 1916 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, DIVIDE );
#line 914 "ncoTree.cpp"
}
@@ -927,7 +927,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t310;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1917 "ncoGrammer.g"
+#line 1918 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, MOD);
#line 933 "ncoTree.cpp"
}
@@ -946,7 +946,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t311;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1919 "ncoGrammer.g"
+#line 1920 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, CARET);
#line 952 "ncoTree.cpp"
}
@@ -963,7 +963,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t312;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1922 "ncoGrammer.g"
+#line 1923 "ncoGrammer.g"
var=ncap_var_var_op(var1,NULL_CEWI, LNOT );
#line 969 "ncoTree.cpp"
}
@@ -980,7 +980,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t315;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1928 "ncoGrammer.g"
+#line 1929 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,INC,false,prs_arg);
#line 986 "ncoTree.cpp"
}
@@ -997,7 +997,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t316;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1930 "ncoGrammer.g"
+#line 1931 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI, DEC,false,prs_arg );
#line 1003 "ncoTree.cpp"
}
@@ -1014,7 +1014,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t317;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1932 "ncoGrammer.g"
+#line 1933 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,POST_INC,false,prs_arg);
@@ -1033,7 +1033,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t318;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1935 "ncoGrammer.g"
+#line 1936 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,POST_DEC,false,prs_arg);
@@ -1054,7 +1054,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t319;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1940 "ncoGrammer.g"
+#line 1941 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, LAND );
#line 1060 "ncoTree.cpp"
}
@@ -1073,7 +1073,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t320;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1942 "ncoGrammer.g"
+#line 1943 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, LOR );
#line 1079 "ncoTree.cpp"
}
@@ -1092,7 +1092,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t321;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1945 "ncoGrammer.g"
+#line 1946 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, LTHAN );
#line 1098 "ncoTree.cpp"
}
@@ -1111,7 +1111,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t322;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1947 "ncoGrammer.g"
+#line 1948 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, GTHAN );
#line 1117 "ncoTree.cpp"
}
@@ -1130,7 +1130,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t323;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1949 "ncoGrammer.g"
+#line 1950 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, GEQ );
#line 1136 "ncoTree.cpp"
}
@@ -1149,7 +1149,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t324;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1951 "ncoGrammer.g"
+#line 1952 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, LEQ );
#line 1155 "ncoTree.cpp"
}
@@ -1168,7 +1168,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t325;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1953 "ncoGrammer.g"
+#line 1954 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, EQ );
#line 1174 "ncoTree.cpp"
}
@@ -1187,7 +1187,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t326;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1955 "ncoGrammer.g"
+#line 1956 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, NEQ );
#line 1193 "ncoTree.cpp"
}
@@ -1206,7 +1206,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t327;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1958 "ncoGrammer.g"
+#line 1959 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, FLTHAN );
#line 1212 "ncoTree.cpp"
}
@@ -1225,7 +1225,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t328;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1960 "ncoGrammer.g"
+#line 1961 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, FGTHAN );
#line 1231 "ncoTree.cpp"
}
@@ -1245,7 +1245,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t329;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1962 "ncoGrammer.g"
+#line 1963 "ncoGrammer.g"
var1=out_asn(pls_asn);
var=ncap_var_var_inc(var1,var2, PLUS_ASSIGN ,(pls_asn->getType()==UTIMES), prs_arg);
@@ -1268,7 +1268,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t330;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1966 "ncoGrammer.g"
+#line 1967 "ncoGrammer.g"
var1=out_asn(min_asn);
var=ncap_var_var_inc(var1,var2, MINUS_ASSIGN ,(min_asn->getType()==UTIMES), prs_arg);
@@ -1291,7 +1291,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t331;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1970 "ncoGrammer.g"
+#line 1971 "ncoGrammer.g"
var1=out_asn(tim_asn);
var=ncap_var_var_inc(var1,var2, TIMES_ASSIGN ,(tim_asn->getType()==UTIMES), prs_arg);
@@ -1314,7 +1314,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t332;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1974 "ncoGrammer.g"
+#line 1975 "ncoGrammer.g"
var1=out_asn(div_asn);
var=ncap_var_var_inc(var1,var2, DIVIDE_ASSIGN ,(div_asn->getType()==UTIMES), prs_arg);
@@ -1335,7 +1335,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t333;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1980 "ncoGrammer.g"
+#line 1981 "ncoGrammer.g"
// Check for RAM variable - if present
// change tree - for example from:
@@ -1386,7 +1386,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t334;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2014 "ncoGrammer.g"
+#line 2015 "ncoGrammer.g"
@@ -1408,7 +1408,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t335;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2019 "ncoGrammer.g"
+#line 2020 "ncoGrammer.g"
bool br;
@@ -1441,7 +1441,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t336;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2037 "ncoGrammer.g"
+#line 2038 "ncoGrammer.g"
// The lexer has appended the index of the function to the function name m - (name#index)
// the index is into fmc_vtr
@@ -1473,7 +1473,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t337;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2048 "ncoGrammer.g"
+#line 2049 "ncoGrammer.g"
// The lexer has appended the index of the function to the function name m - (name#index)
// the index is into fmc_vtr
@@ -1492,7 +1492,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,DIM_ID_SIZE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2058 "ncoGrammer.g"
+#line 2059 "ncoGrammer.g"
string sDim=dval->getText();
dmn_sct *dmn_fd;
@@ -1542,7 +1542,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,ATT_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2130 "ncoGrammer.g"
+#line 2131 "ncoGrammer.g"
NcapVar *Nvar=NULL;
@@ -1582,7 +1582,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,VALUE_LIST);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2161 "ncoGrammer.g"
+#line 2162 "ncoGrammer.g"
var=value_list(vlst);
@@ -1596,7 +1596,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,NSTRING);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2166 "ncoGrammer.g"
+#line 2167 "ncoGrammer.g"
char *tsng;
@@ -1628,7 +1628,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,N4STRING);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2189 "ncoGrammer.g"
+#line 2190 "ncoGrammer.g"
char *tsng;
@@ -1666,7 +1666,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,FLOAT);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2219 "ncoGrammer.g"
+#line 2220 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~float"),(nc_type)NC_FLOAT,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~float"),static_cast<float>(std::strtod(val_float->getText().c_str(),(char **)NULL)));
#line 1672 "ncoTree.cpp"
}
@@ -1678,7 +1678,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,DOUBLE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2221 "ncoGrammer.g"
+#line 2222 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~double"),(nc_type)NC_DOUBLE,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~double"),strtod(val_double->getText().c_str(),(char **)NULL));
#line 1684 "ncoTree.cpp"
}
@@ -1690,7 +1690,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,INT);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2223 "ncoGrammer.g"
+#line 2224 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~int"),(nc_type)NC_INT,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~int"),static_cast<nco_int>(std::strtol(val_int->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1696 "ncoTree.cpp"
}
@@ -1702,7 +1702,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,SHORT);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2225 "ncoGrammer.g"
+#line 2226 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~short"),(nc_type)NC_SHORT,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~short"),static_cast<nco_short>(std::strtol(val_short->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1708 "ncoTree.cpp"
}
@@ -1714,7 +1714,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,BYTE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2227 "ncoGrammer.g"
+#line 2228 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~byte"),(nc_type)NC_BYTE,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~byte"),static_cast<nco_byte>(std::strtol(val_byte->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1720 "ncoTree.cpp"
}
@@ -1726,7 +1726,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,UBYTE);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2232 "ncoGrammer.g"
+#line 2233 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~ubyte"),(nc_type)NC_UBYTE,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~ubyte"),static_cast<nco_ubyte>(std::strtoul(val_ubyte->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1732 "ncoTree.cpp"
}
@@ -1738,7 +1738,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,USHORT);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2236 "ncoGrammer.g"
+#line 2237 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~ushort"),(nc_type)NC_USHORT,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~ushort"),static_cast<nco_ushort>(std::strtoul(val_ushort->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1744 "ncoTree.cpp"
}
@@ -1750,7 +1750,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,UINT);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2238 "ncoGrammer.g"
+#line 2239 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~uint"),(nc_type)NC_UINT,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~uint"),static_cast<nco_uint>(std::strtoul(val_uint->getText().c_str(),(char **)NULL,NCO_SNG_CNV_BASE10)));
#line 1756 "ncoTree.cpp"
}
@@ -1762,7 +1762,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,INT64);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2240 "ncoGrammer.g"
+#line 2241 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~int64"),(nc_type)NC_INT64,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~int64"),sng2nbr(val_int64->getText(),nco_int64_CEWI));
#line 1768 "ncoTree.cpp"
}
@@ -1774,7 +1774,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,UINT64);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2244 "ncoGrammer.g"
+#line 2245 "ncoGrammer.g"
if(prs_arg->ntl_scn) var=ncap_sclr_var_mk(static_cast<std::string>("~uint64"),(nc_type)NC_UINT64,false); else var=ncap_sclr_var_mk(static_cast<std::string>("~uint64"),sng2nbr(val_uint64->getText(),nco_uint64_CEWI));
#line 1780 "ncoTree.cpp"
}
@@ -1820,7 +1820,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t279;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1895 "ncoGrammer.g"
+#line 1896 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, PLUS );
#line 1826 "ncoTree.cpp"
}
@@ -1865,7 +1865,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t283;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1897 "ncoGrammer.g"
+#line 1898 "ncoGrammer.g"
var=ncap_var_var_op(var1,var2, MINUS );
#line 1871 "ncoTree.cpp"
}
@@ -1918,7 +1918,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t288;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1898 "ncoGrammer.g"
+#line 1899 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,POST_INC,true,prs_arg);
@@ -1973,7 +1973,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t294;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1901 "ncoGrammer.g"
+#line 1902 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,POST_DEC,true,prs_arg);
@@ -2028,7 +2028,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t300;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1904 "ncoGrammer.g"
+#line 1905 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,INC,true,prs_arg);
@@ -2083,7 +2083,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t306;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1907 "ncoGrammer.g"
+#line 1908 "ncoGrammer.g"
var=ncap_var_var_inc(var1,NULL_CEWI,DEC,true,prs_arg);
@@ -2100,7 +2100,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t313;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1924 "ncoGrammer.g"
+#line 1925 "ncoGrammer.g"
var=ncap_var_var_op(var1,NULL_CEWI, MINUS );
#line 2106 "ncoTree.cpp"
}
@@ -2153,7 +2153,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t341;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2099 "ncoGrammer.g"
+#line 2100 "ncoGrammer.g"
// see if hyperslab limit is a single value
if(lmt->getNumberOfChildren()==1 &&
@@ -2173,7 +2173,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,VAR_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2113 "ncoGrammer.g"
+#line 2114 "ncoGrammer.g"
var=prs_arg->ncap_var_init(v->getText(),true);
@@ -2213,7 +2213,7 @@ var_sct * ncoTree::out(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
bool bram
) {
-#line 1350 "ncoGrammer.g"
+#line 1351 "ncoGrammer.g"
var_sct *var;
#line 2219 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST assign_ntl_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
@@ -2225,7 +2225,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
ANTLR_USE_NAMESPACE(antlr)RefAST att = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST att1 = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST att2 = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 1350 "ncoGrammer.g"
+#line 1351 "ncoGrammer.g"
const std::string fnc_nm("assign_ntl");
var=NULL_CEWI;
@@ -2270,7 +2270,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t245;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1355 "ncoGrammer.g"
+#line 1356 "ncoGrammer.g"
std::string var_nm;
@@ -2340,7 +2340,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t249;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1384 "ncoGrammer.g"
+#line 1385 "ncoGrammer.g"
int idx;
@@ -2417,7 +2417,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
match(_t,VAR_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1453 "ncoGrammer.g"
+#line 1454 "ncoGrammer.g"
std::string var_nm;
@@ -2487,7 +2487,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t253;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1482 "ncoGrammer.g"
+#line 1483 "ncoGrammer.g"
;
@@ -2532,7 +2532,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t257;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1485 "ncoGrammer.g"
+#line 1486 "ncoGrammer.g"
;
@@ -2544,7 +2544,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
match(_t,ATT_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1488 "ncoGrammer.g"
+#line 1489 "ncoGrammer.g"
//In Initial scan all newly defined atts are flagged as Undefined
@@ -2586,7 +2586,7 @@ var_sct * ncoTree::assign_ntl(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
bool bram
) {
-#line 1508 "ncoGrammer.g"
+#line 1509 "ncoGrammer.g"
var_sct *var;
#line 2592 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST assign_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
@@ -2598,7 +2598,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
ANTLR_USE_NAMESPACE(antlr)RefAST att = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST att1 = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST att2 = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 1508 "ncoGrammer.g"
+#line 1509 "ncoGrammer.g"
const std::string fnc_nm("assign");
var=NULL_CEWI;
@@ -2643,7 +2643,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t262;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1514 "ncoGrammer.g"
+#line 1515 "ncoGrammer.g"
int idx;
@@ -2880,7 +2880,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t266;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1711 "ncoGrammer.g"
+#line 1712 "ncoGrammer.g"
var_sct *var1;
@@ -2967,7 +2967,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
match(_t,VAR_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1790 "ncoGrammer.g"
+#line 1791 "ncoGrammer.g"
// Set class wide variables
var_sct *var1;
@@ -3062,7 +3062,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t270;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1844 "ncoGrammer.g"
+#line 1845 "ncoGrammer.g"
;
@@ -3107,7 +3107,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t274;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1847 "ncoGrammer.g"
+#line 1848 "ncoGrammer.g"
;
@@ -3119,7 +3119,7 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
match(_t,ATT_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 1850 "ncoGrammer.g"
+#line 1851 "ncoGrammer.g"
var_sct *var1;
@@ -3175,14 +3175,14 @@ var_sct * ncoTree::assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
}
var_sct * ncoTree::out_asn(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 2254 "ncoGrammer.g"
+#line 2255 "ncoGrammer.g"
var_sct *var;
#line 3181 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST out_asn_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vid1 = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST vid = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST att = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2254 "ncoGrammer.g"
+#line 2255 "ncoGrammer.g"
const std::string fnc_nm("assign_asn");
var=NULL_CEWI;
@@ -3208,7 +3208,7 @@ var_sct * ncoTree::out_asn(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t343;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2264 "ncoGrammer.g"
+#line 2265 "ncoGrammer.g"
if(vid1->getFirstChild())
err_prn(fnc_nm,"Invalid Lvalue " +vid1->getText() );
@@ -3236,7 +3236,7 @@ var_sct * ncoTree::out_asn(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,VAR_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2282 "ncoGrammer.g"
+#line 2283 "ncoGrammer.g"
var_nm_s=vid->getText();
if(vid->getFirstChild())
@@ -3265,7 +3265,7 @@ var_sct * ncoTree::out_asn(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
match(_t,ATT_ID);
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2301 "ncoGrammer.g"
+#line 2302 "ncoGrammer.g"
// check "output"
NcapVar *Nvar=NULL;
@@ -3322,12 +3322,12 @@ var_sct * ncoTree::out_asn(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
}
var_sct * ncoTree::value_list(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 2335 "ncoGrammer.g"
+#line 2336 "ncoGrammer.g"
var_sct *var;
#line 3328 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST value_list_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vlst = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2335 "ncoGrammer.g"
+#line 2336 "ncoGrammer.g"
const std::string fnc_nm("value_list");
var=NULL_CEWI;
@@ -3341,7 +3341,7 @@ var_sct * ncoTree::value_list(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = _t->getNextSibling();
}
if ( inputState->guessing==0 ) {
-#line 2340 "ncoGrammer.g"
+#line 2341 "ncoGrammer.g"
char *cp;
@@ -3448,11 +3448,11 @@ var_sct * ncoTree::value_list(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
var_sct * ncoTree::value_list_string(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
std::vector<var_sct*> &exp_vtr
) {
-#line 2431 "ncoGrammer.g"
+#line 2432 "ncoGrammer.g"
var_sct *var;
#line 3454 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST value_list_string_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
-#line 2431 "ncoGrammer.g"
+#line 2432 "ncoGrammer.g"
const std::string fnc_nm("value_list_string");
var=NULL_CEWI;
@@ -3461,7 +3461,7 @@ var_sct * ncoTree::value_list_string(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
try { // for error handling
if ( inputState->guessing==0 ) {
-#line 2437 "ncoGrammer.g"
+#line 2438 "ncoGrammer.g"
int idx;
int nbr_lst;
@@ -3529,12 +3529,12 @@ var_sct * ncoTree::value_list_string(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
bool ncoTree::where_assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
var_sct *var_msk
) {
-#line 2488 "ncoGrammer.g"
+#line 2489 "ncoGrammer.g"
bool bret=false;
#line 3535 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST where_assign_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vid = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2488 "ncoGrammer.g"
+#line 2489 "ncoGrammer.g"
const std::string fnc_nm("where_assign");
var_sct *var_rhs;
@@ -3561,7 +3561,7 @@ bool ncoTree::where_assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t348;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2494 "ncoGrammer.g"
+#line 2495 "ncoGrammer.g"
bool bfr=false;
@@ -3710,12 +3710,12 @@ bool ncoTree::where_assign(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
}
var_sct * ncoTree::var_lmt_one(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 2629 "ncoGrammer.g"
+#line 2630 "ncoGrammer.g"
var_sct *var;
#line 3716 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST var_lmt_one_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vid = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2629 "ncoGrammer.g"
+#line 2630 "ncoGrammer.g"
const std::string fnc_nm("var_lmt_one");
var=NULL_CEWI;
@@ -3745,7 +3745,7 @@ var_sct * ncoTree::var_lmt_one(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t351;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2635 "ncoGrammer.g"
+#line 2636 "ncoGrammer.g"
int idx;
@@ -3865,12 +3865,12 @@ var_sct * ncoTree::var_lmt_one(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
var_sct * ncoTree::var_lmt_one_lhs(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
bool bram
) {
-#line 2739 "ncoGrammer.g"
+#line 2740 "ncoGrammer.g"
var_sct *var;
#line 3871 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST var_lmt_one_lhs_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vid = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2739 "ncoGrammer.g"
+#line 2740 "ncoGrammer.g"
const std::string fnc_nm("var_lmt_one_lhs");
var=NULL_CEWI;
@@ -3900,7 +3900,7 @@ var_sct * ncoTree::var_lmt_one_lhs(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
_t = __t355;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2745 "ncoGrammer.g"
+#line 2746 "ncoGrammer.g"
int idx;
int var_id;
@@ -4062,13 +4062,13 @@ var_sct * ncoTree::var_lmt_one_lhs(ANTLR_USE_NAMESPACE(antlr)RefAST _t,
}
var_sct * ncoTree::var_lmt(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
-#line 2892 "ncoGrammer.g"
+#line 2893 "ncoGrammer.g"
var_sct *var;
#line 4068 "ncoTree.cpp"
ANTLR_USE_NAMESPACE(antlr)RefAST var_lmt_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t;
ANTLR_USE_NAMESPACE(antlr)RefAST vid = ANTLR_USE_NAMESPACE(antlr)nullAST;
ANTLR_USE_NAMESPACE(antlr)RefAST lmt = ANTLR_USE_NAMESPACE(antlr)nullAST;
-#line 2892 "ncoGrammer.g"
+#line 2893 "ncoGrammer.g"
const std::string fnc_nm("var_lmt");
var=NULL_CEWI;
@@ -4086,7 +4086,7 @@ var_sct * ncoTree::var_lmt(ANTLR_USE_NAMESPACE(antlr)RefAST _t) {
_t = __t359;
_t = _t->getNextSibling();
if ( inputState->guessing==0 ) {
-#line 2897 "ncoGrammer.g"
+#line 2898 "ncoGrammer.g"
bool bram; // Check for a RAM variable
bool bnrm;
diff --git a/src/nco++/ncoTree.hpp b/src/nco++/ncoTree.hpp
index 70e1ca2..0f5112c 100644
--- a/src/nco++/ncoTree.hpp
+++ b/src/nco++/ncoTree.hpp
@@ -8,7 +8,7 @@
#line 1 "ncoGrammer.g"
-/* $Header: /cvsroot/nco/nco/src/nco++/ncoTree.hpp,v 1.164 2015/01/17 00:49:35 zender Exp $ */
+/* $Header$ */
/* Purpose: ANTLR Grammar and support files for ncap2 */
@@ -51,7 +51,7 @@
#line 52 "ncoTree.hpp"
class CUSTOM_API ncoTree : public ANTLR_USE_NAMESPACE(antlr)TreeParser, public ncoParserTokenTypes
{
-#line 635 "ncoGrammer.g"
+#line 636 "ncoGrammer.g"
private:
diff --git a/src/nco++/nco_gsl.c b/src/nco++/nco_gsl.c
index 23c2784..330bd8e 100644
--- a/src/nco++/nco_gsl.c
+++ b/src/nco++/nco_gsl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/nco_gsl.c,v 1.9 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* Purpose: GSL functions that handle missing values */
diff --git a/src/nco++/nco_gsl.h b/src/nco++/nco_gsl.h
index 9832401..7e6c799 100644
--- a/src/nco++/nco_gsl.h
+++ b/src/nco++/nco_gsl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/nco_gsl.h,v 1.8 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* Purpose: GSL functions that handle missing values */
diff --git a/src/nco++/prs_cls.cc b/src/nco++/prs_cls.cc
index 8d93c72..d465ae9 100644
--- a/src/nco++/prs_cls.cc
+++ b/src/nco++/prs_cls.cc
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco++/prs_cls.cc,v 1.35 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor */
/* prs_cls -- symbol table - class methods */
diff --git a/src/nco++/sdo_utl.cc b/src/nco++/sdo_utl.cc
index 29e1176..3ff2eb4 100644
--- a/src/nco++/sdo_utl.cc
+++ b/src/nco++/sdo_utl.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco++/sdo_utl.cc,v 1.8 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Implementation (declaration) of SDO stand-alone utilities
diff --git a/src/nco++/sdo_utl.hh b/src/nco++/sdo_utl.hh
index ecaa03e..566244b 100644
--- a/src/nco++/sdo_utl.hh
+++ b/src/nco++/sdo_utl.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco++/sdo_utl.hh,v 1.8 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of SDO stand-alone utilities
diff --git a/src/nco/.gitignore b/src/nco/.gitignore
new file mode 100644
index 0000000..b64214d
--- /dev/null
+++ b/src/nco/.gitignore
@@ -0,0 +1,17 @@
+# Git-ignore patterns for ~/nco/src/nco
+/Makefile
+/ncap_lex.c
+/ncap_yacc.c
+/ncap_yacc.h
+
+# Created locally by configure->make all
+/ncap
+/ncatted
+/ncbo
+/ncecat
+/ncflint
+/ncks
+/ncpdq
+/ncra
+/ncrename
+/ncwa
diff --git a/src/nco/ESMC_CoordSys.h b/src/nco/ESMC_CoordSys.h
new file mode 100644
index 0000000..49ee160
--- /dev/null
+++ b/src/nco/ESMC_CoordSys.h
@@ -0,0 +1,37 @@
+// $Id$
+//
+// Earth System Modeling Framework
+// Copyright 2002-2014, University Corporation for Atmospheric Research,
+// Massachusetts Institute of Technology, Geophysical Fluid Dynamics
+// Laboratory, University of Michigan, National Centers for Environmental
+// Prediction, Los Alamos National Laboratory, Argonne National Laboratory,
+// NASA Goddard Space Flight Center.
+// Licensed under the University of Illinois-NCSA License.
+//
+// ESMF Util C++ declaration include file
+//
+//-----------------------------------------------------------------------------
+//
+
+#ifndef ESMC_COORDSYS_H
+#define ESMC_COORDSYS_H
+
+
+enum ESMC_CoordSys_Flag {ESMC_COORDSYS_INVALID=-2,
+ ESMC_COORDSYS_UNINIT,
+ ESMC_COORDSYS_CART,
+ ESMC_COORDSYS_SPH_DEG,
+ ESMC_COORDSYS_SPH_RAD};
+
+// Constants for converting between radians and degrees
+// (These need to match the ones in ESMF_UtilTypes.F90)
+
+/* csz 20150320
+ Define these only in main() files not in original location in ESMC_CoordSys.h
+ Otherwise any file #including ESMC.h inadvertently includes these constants multiple times
+ Should be defined as externals that resolve to single definition in main()
+ sudo cp ~/nco/src/nco/ESMC_CoordSys.h /usr/local/include */
+//const double ESMC_CoordSys_Deg2Rad= 0.01745329251994329547437;
+//const double ESMC_CoordSys_Rad2Deg=57.29577951308232286464772;
+
+#endif // ESMC_COORDSYS_H
diff --git a/src/nco/Makefile.am b/src/nco/Makefile.am
index 3ed6623..468188e 100644
--- a/src/nco/Makefile.am
+++ b/src/nco/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco/Makefile.am,v 1.55 2015/01/20 22:03:14 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
if BUILD_YACC_SOURCE
NCAP=ncap
@@ -108,8 +108,10 @@ nco_mss_val.h \
nco_netcdf.h \
nco_omp.h \
nco_pck.h \
+nco_ppc.h \
nco_prn.h \
nco_rec_var.h \
+nco_rgr.h \
nco_rth_flt.h \
nco_rth_utl.h \
nco_scl_utl.h \
@@ -165,8 +167,10 @@ nco_mss_val.c \
nco_netcdf.c \
nco_omp.c \
nco_pck.c \
+nco_ppc.c \
nco_prn.c \
nco_rec_var.c \
+nco_rgr.c \
nco_rth_flt.c \
nco_rth_utl.c \
nco_scl_utl.c \
diff --git a/src/nco/Makefile.in b/src/nco/Makefile.in
index 260411a..3ee37c7 100644
--- a/src/nco/Makefile.in
+++ b/src/nco/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/src/nco/Makefile.in,v 1.156 2015/01/20 22:03:14 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
@@ -148,16 +148,17 @@ am__libnco_la_SOURCES_DIST = libnco.h nco_getopt.h ncap.h ncap_yacc.h \
nco_cnv_csm.h nco_ctl.h nco_dbg.h nco_dmn_utl.h nco_fl_utl.h \
nco_grp_utl.h nco_grp_trv.h nco_lmt.h nco_lst_utl.h nco_md5.h \
nco_mmr.h nco_mpi.h nco_msa.h nco_mss_val.h nco_netcdf.h \
- nco_omp.h nco_pck.h nco_prn.h nco_rec_var.h nco_rth_flt.h \
- nco_rth_utl.h nco_scl_utl.h nco_scm.h nco_sld.h nco_sng_utl.h \
- nco_srm.h nco_typ.h nco_uthash.h nco_var_avg.h nco_var_lst.h \
- nco_var_rth.h nco_var_scv.h nco_var_utl.h nco_getopt.c \
- nco_att_utl.c nco_aux.c nco_bnr.c nco_cln_utl.c nco_cnf_dmn.c \
- nco_cnf_typ.c nco_cnk.c nco_cnv_arm.c nco_cnv_csm.c nco_ctl.c \
- nco_dbg.c nco_dmn_utl.c nco_fl_utl.c nco_grp_utl.c \
- nco_grp_trv.c nco_lmt.c nco_lst_utl.c nco_md5.c nco_mmr.c \
- nco_msa.c nco_mss_val.c nco_netcdf.c nco_omp.c nco_pck.c \
- nco_prn.c nco_rec_var.c nco_rth_flt.c nco_rth_utl.c \
+ nco_omp.h nco_pck.h nco_ppc.h nco_prn.h nco_rec_var.h \
+ nco_rgr.h nco_rth_flt.h nco_rth_utl.h nco_scl_utl.h nco_scm.h \
+ nco_sld.h nco_sng_utl.h nco_srm.h nco_typ.h nco_uthash.h \
+ nco_var_avg.h nco_var_lst.h nco_var_rth.h nco_var_scv.h \
+ nco_var_utl.h nco_getopt.c nco_att_utl.c nco_aux.c nco_bnr.c \
+ nco_cln_utl.c nco_cnf_dmn.c nco_cnf_typ.c nco_cnk.c \
+ nco_cnv_arm.c nco_cnv_csm.c nco_ctl.c nco_dbg.c nco_dmn_utl.c \
+ nco_fl_utl.c nco_grp_utl.c nco_grp_trv.c nco_lmt.c \
+ nco_lst_utl.c nco_md5.c nco_mmr.c nco_msa.c nco_mss_val.c \
+ nco_netcdf.c nco_omp.c nco_pck.c nco_ppc.c nco_prn.c \
+ nco_rec_var.c nco_rgr.c nco_rth_flt.c nco_rth_utl.c \
nco_scl_utl.c nco_scm.c nco_sld.c nco_sng_utl.c nco_srm.c \
nco_var_avg.c nco_var_lst.c nco_var_rth.c nco_var_scv.c \
nco_var_utl.c
@@ -170,10 +171,11 @@ am_libnco_la_OBJECTS = $(am__objects_2) $(am__objects_3) \
nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo \
nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo \
nco_lst_utl.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo \
- nco_netcdf.lo nco_omp.lo nco_pck.lo nco_prn.lo nco_rec_var.lo \
- nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo \
- nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo \
- nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo
+ nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo \
+ nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo \
+ nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo \
+ nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo \
+ nco_var_utl.lo
libnco_la_OBJECTS = $(am_libnco_la_OBJECTS)
AM_V_lt = $(am__v_lt_ at AM_V@)
am__v_lt_ = $(am__v_lt_ at AM_DEFAULT_V@)
@@ -530,6 +532,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
@@ -719,8 +723,10 @@ nco_mss_val.h \
nco_netcdf.h \
nco_omp.h \
nco_pck.h \
+nco_ppc.h \
nco_prn.h \
nco_rec_var.h \
+nco_rgr.h \
nco_rth_flt.h \
nco_rth_utl.h \
nco_scl_utl.h \
@@ -775,8 +781,10 @@ nco_mss_val.c \
nco_netcdf.c \
nco_omp.c \
nco_pck.c \
+nco_ppc.c \
nco_prn.c \
nco_rec_var.c \
+nco_rgr.c \
nco_rth_flt.c \
nco_rth_utl.c \
nco_scl_utl.c \
@@ -1028,8 +1036,10 @@ distclean-compile:
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_netcdf.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_omp.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_pck.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_ppc.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_prn.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_rec_var.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_rgr.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_rth_flt.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_rth_utl.Plo at am__quote@
@AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/nco_scl_utl.Plo at am__quote@
diff --git a/src/nco/libnco.h b/src/nco/libnco.h
index 86f0e89..0e1b889 100644
--- a/src/nco/libnco.h
+++ b/src/nco/libnco.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/libnco.h,v 1.62 2015/01/20 21:56:46 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF Operator (NCO) library */
@@ -43,15 +43,17 @@
#include "nco_mss_val.h" /* Missing value utilities */
#include "nco_omp.h" /* OpenMP utilities */
#include "nco_pck.h" /* Packing and unpacking variables */
+#include "nco_ppc.h" /* Precision-Preserving Compression */
#include "nco_prn.h" /* Print variables, attributes, metadata */
#include "nco_rec_var.h" /* Record variable utilities */
+#include "nco_rgr.h" /* Regridding */
#include "nco_rth_flt.h" /* Float-precision arithmetic, MSVC macros */
#include "nco_rth_utl.h" /* Arithmetic controls and utilities */
#include "nco_scl_utl.h" /* Scalar utilities */
#include "nco_scm.h" /* Software configuration management */
+#include "nco_sld.h" /* Swath-Like Data */
#include "nco_sng_utl.h" /* String utilities */
#include "nco_srm.h" /* Streams */
-#include "nco_sld.h" /* Swath-Like Data */
#include "nco_var_avg.h" /* Average variables */
#include "nco_uthash.h" /* Hash table functionality */
#include "nco_var_lst.h" /* Variable list utilities */
diff --git a/src/nco/mpncbo.c b/src/nco/mpncbo.c
index d87e97d..c4afb2d 100644
--- a/src/nco/mpncbo.c
+++ b/src/nco/mpncbo.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncbo.c,v 1.151 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* mpncbo -- netCDF binary operator */
@@ -125,8 +125,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- const char * const CVS_Id="$Id: mpncbo.c,v 1.151 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.151 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:FhL:l:Oo:p:rRSt:v:X:xy:-:";
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
diff --git a/src/nco/mpncecat.c b/src/nco/mpncecat.c
index 4f25cfc..0bb0452 100644
--- a/src/nco/mpncecat.c
+++ b/src/nco/mpncecat.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncecat.c,v 1.129 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* ncecat -- netCDF ensemble concatenator */
@@ -100,8 +100,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- const char * const CVS_Id="$Id: mpncecat.c,v 1.129 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.129 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:FHhL:l:n:Oo:p:rRSt:u:v:X:x-:";
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
diff --git a/src/nco/mpncflint.c b/src/nco/mpncflint.c
index cee347c..d454d6e 100644
--- a/src/nco/mpncflint.c
+++ b/src/nco/mpncflint.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncflint.c,v 1.128 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* mpncflint -- netCDF file interpolator */
@@ -111,8 +111,8 @@ main(int argc,char **argv)
char *optarg_lcl=NULL; /* [sng] Local copy of system optarg */
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- const char * const CVS_Id="$Id: mpncflint.c,v 1.128 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.128 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:Fhi:L:l:Oo:p:rRSt:v:xw:-:";
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
diff --git a/src/nco/mpncpdq.c b/src/nco/mpncpdq.c
index 630fd95..e0d98d7 100644
--- a/src/nco/mpncpdq.c
+++ b/src/nco/mpncpdq.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncpdq.c,v 1.122 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* mpncpdq -- netCDF pack, re-dimension, query */
@@ -117,8 +117,8 @@ main(int argc,char **argv)
char add_fst_sng[]="add_offset"; /* [sng] Unidata standard string for add offset */
char scl_fct_sng[]="scale_factor"; /* [sng] Unidata standard string for scale factor */
- const char * const CVS_Id="$Id: mpncpdq.c,v 1.122 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.122 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467Aa:CcD:d:FhL:l:M:Oo:P:p:RrSt:v:Ux-:";
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
diff --git a/src/nco/mpncra.c b/src/nco/mpncra.c
index f0b95ff..6cacdb1 100644
--- a/src/nco/mpncra.c
+++ b/src/nco/mpncra.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncra.c,v 1.159 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* This single source file may be called as three separate executables:
ncra -- netCDF record averager
@@ -150,8 +150,8 @@ main(int argc,char **argv)
char *optarg_lcl=NULL; /* [sng] Local copy of system optarg */
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- const char * const CVS_Id="$Id: mpncra.c,v 1.159 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.159 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:FHhL:l:n:Oo:p:P:rRSt:v:xY:y:-:";
dmn_sct **dim;
diff --git a/src/nco/mpncwa.c b/src/nco/mpncwa.c
index 7b0f470..00fde32 100644
--- a/src/nco/mpncwa.c
+++ b/src/nco/mpncwa.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/mpncwa.c,v 1.152 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* mpncwa -- netCDF weighted averager */
@@ -126,8 +126,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char *wgt_nm=NULL;
- const char * const CVS_Id="$Id: mpncwa.c,v 1.152 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.152 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467Aa:B:bCcD:d:FhIL:l:M:m:nNOo:p:rRST:t:v:Ww:xy:-:";
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
diff --git a/src/nco/ncap.c b/src/nco/ncap.c
index 24bee7c..1dcabd9 100644
--- a/src/nco/ncap.c
+++ b/src/nco/ncap.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncap.c,v 1.294 2015/01/20 18:20:15 zender Exp $ */
+/* $Header$ */
/* ncap -- netCDF arithmetic processor */
@@ -57,7 +57,6 @@
# endif /* !HAVE_GETOPT_H */
#endif /* HAVE_GETOPT_LONG */
-
/* Personal headers */
/* #define MAIN_PROGRAM_FILE MUST precede #include libnco.h */
#define MAIN_PROGRAM_FILE
@@ -126,8 +125,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- const char * const CVS_Id="$Id: ncap.c,v 1.294 2015/01/20 18:20:15 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.294 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:FfhL:l:n:Oo:p:Rrs:S:vx-:"; /* [sng] Single letter command line options */
cnk_dmn_sct **cnk_dmn=NULL_CEWI;
@@ -747,7 +746,7 @@ main(int argc,char **argv)
} /* endif */
(void)nco_def_var(out_id,var_ycc[idx]->nm,var_ycc[idx]->type,var_ycc[idx]->nbr_dim,var_ycc[idx]->dmn_id,&var_id);
/* Set HDF Lempel-Ziv compression level, if requested */
- if(dfl_lvl >= 0 && var_ycc[idx]->nbr_dim > 0) (void)nco_def_var_deflate(out_id,var_id,(int)True,(int)True,dfl_lvl);
+ if(dfl_lvl >= 0 && var_ycc[idx]->nbr_dim > 0) (void)nco_def_var_deflate(out_id,var_id,(int)NC_SHUFFLE,(int)True,dfl_lvl);
var_ycc[idx]->val.vp=nco_free(var_ycc[idx]->val.vp);
} /* end loop over idx */
(void)nco_enddef(out_id);
diff --git a/src/nco/ncap.h b/src/nco/ncap.h
index 928f0d6..b78dd3c 100644
--- a/src/nco/ncap.h
+++ b/src/nco/ncap.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncap.h,v 1.102 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor definitions and function prototypes for ncap.c, ncap_utl.c, ncap_lex.l, and ncap_yacc.y */
diff --git a/src/nco/ncap_lex.l b/src/nco/ncap_lex.l
index e4ee5ed..1af99fc 100644
--- a/src/nco/ncap_lex.l
+++ b/src/nco/ncap_lex.l
@@ -1,4 +1,4 @@
-%{ /* $Header: /cvsroot/nco/nco/src/nco/ncap_lex.l,v 1.88 2015/02/03 17:02:34 zender Exp $ -*-C-*- */
+%{ /* $Header$ -*-C-*- */
/* Everything from here to closing brace is placed at top of lexer */
/* Purpose: Token generator for ncap parser */
diff --git a/src/nco/ncap_utl.c b/src/nco/ncap_utl.c
index 7029fb4..c38e60a 100644
--- a/src/nco/ncap_utl.c
+++ b/src/nco/ncap_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncap_utl.c,v 1.162 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF arithmetic processor */
@@ -226,7 +226,7 @@ ncap_var_write
/* Define variable */
(void)nco_def_var(prs_arg->out_id,var->nm,var->type,var->nbr_dim,var->dmn_id,&var_out_id);
/* Set HDF Lempel-Ziv compression level, if requested */
- if(prs_arg->dfl_lvl >= 0 && var->nbr_dim > 0) (void)nco_def_var_deflate(prs_arg->out_id,var_out_id,(int)True,(int)True,prs_arg->dfl_lvl);
+ if(prs_arg->dfl_lvl >= 0 && var->nbr_dim > 0) (void)nco_def_var_deflate(prs_arg->out_id,var_out_id,(int)NC_SHUFFLE,(int)True,prs_arg->dfl_lvl);
/* Set chunk sizes, if requested */
if(prs_arg->cnk_sz && var->nbr_dim > 0) (void)nco_def_var_chunking(prs_arg->out_id,var_out_id,(int)NC_CHUNKED,prs_arg->cnk_sz);
diff --git a/src/nco/ncap_yacc.y b/src/nco/ncap_yacc.y
index d0e3dc9..d47ff5c 100644
--- a/src/nco/ncap_yacc.y
+++ b/src/nco/ncap_yacc.y
@@ -1,4 +1,4 @@
-%{ /* $Header: /cvsroot/nco/nco/src/nco/ncap_yacc.y,v 1.70 2014/12/31 01:50:07 zender Exp $ -*-C-*- */
+%{ /* $Header$ -*-C-*- */
/* Begin C declarations section */
diff --git a/src/nco/ncatted.c b/src/nco/ncatted.c
index 26563af..d2ff805 100644
--- a/src/nco/ncatted.c
+++ b/src/nco/ncatted.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncatted.c,v 1.196 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* ncatted -- netCDF attribute editor */
@@ -174,8 +174,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncatted.c,v 1.196 2014/12/31 01:50:07 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.196 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="Aa:D:hl:Oo:p:Rr-:";
#if defined(__cplusplus) || defined(PGI_CC)
diff --git a/src/nco/ncbo.c b/src/nco/ncbo.c
index 180d084..4762cd0 100644
--- a/src/nco/ncbo.c
+++ b/src/nco/ncbo.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncbo.c,v 1.314 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncbo -- netCDF binary operator */
@@ -145,8 +145,8 @@ main(int argc,char **argv)
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncbo.c,v 1.314 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.314 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:FG:g:hL:l:Oo:p:rRt:v:X:xzy:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -605,7 +605,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt_1;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id_1,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl_1);
/* Verify output file format supports requested actions */
@@ -615,7 +615,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id_1,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
if(gpe){
if(nco_dbg_lvl >= nco_dbg_fl) (void)fprintf(stderr,"%s: INFO Group Path Edit (GPE) feature enabled\n",nco_prg_nm_get());
diff --git a/src/nco/ncecat.c b/src/nco/ncecat.c
index a197611..62283a5 100644
--- a/src/nco/ncecat.c
+++ b/src/nco/ncecat.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncecat.c,v 1.380 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncecat -- netCDF ensemble concatenator */
@@ -27,7 +27,7 @@
University of California, Irvine
Irvine, CA 92697-3100 */
-/* URL: http://nco.cvs.sf.net/nco/nco/src/nco/ncecat.c
+/* URL: https://github.com/czender/nco/tree/master/src/nco/ncecat.c
Usage:
ncecat -O -D 1 -p ${HOME}/nco/data in_grp.nc in_grp.nc ~/foo.nc
@@ -141,8 +141,8 @@ main(int argc,char **argv)
char grp_out_sfx[NCO_GRP_OUT_SFX_LNG+1L];
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncecat.c,v 1.380 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.380 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:Fg:G:HhL:l:Mn:Oo:p:rRt:u:v:X:x-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -576,17 +576,17 @@ main(int argc,char **argv)
if(RAM_OPEN) md_open=NC_NOWRITE|NC_DISKLESS; else md_open=NC_NOWRITE;
+ /* Open file using appropriate buffer size hints and verbosity */
+ rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
+
+ (void)nco_inq_format(in_id,&fl_in_fmt);
+
if(RECORD_AGGREGATE){
/* Initialize thread information */
thr_nbr=nco_openmp_ini(thr_nbr);
in_id_arr=(int *)nco_malloc(thr_nbr*sizeof(int));
- /* Open file using appropriate buffer size hints and verbosity */
- rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
-
- (void)nco_inq_format(in_id,&fl_in_fmt);
-
/* Construct GTT, Group Traversal Table (groups,variables,dimensions, limits) */
(void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,False,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
@@ -616,7 +616,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -626,12 +626,12 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* ncecat-specific operations */
if(RECORD_AGGREGATE){
- if(rec_dmn_nm == NULL) rec_dmn_nm=(char *)strdup("record");
+ if(!rec_dmn_nm) rec_dmn_nm=(char *)strdup("record");
/* Prepend record dimension to beginning of all vectors for processed variables */
for(idx=0;idx<nbr_var_prc;idx++){
@@ -776,7 +776,7 @@ main(int argc,char **argv)
if(nco_dbg_lvl >= nco_dbg_scl) (void)fprintf(stderr,"%s: INFO GAG current file has gpe->arg=%s\n",nco_prg_nm_get(),gpe->arg);
/* Open file using appropriate buffer size hints and verbosity */
- rcd=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
+ if(fl_idx) rcd=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
if(fl_idx == 0){
/* fxm: Copy global attributes of first file to root of output file to preserve history attribute */
diff --git a/src/nco/ncflint.c b/src/nco/ncflint.c
index c105599..3da40dc 100644
--- a/src/nco/ncflint.c
+++ b/src/nco/ncflint.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncflint.c,v 1.303 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncflint -- netCDF file interpolator */
@@ -134,8 +134,8 @@ main(int argc,char **argv)
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncflint.c,v 1.303 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.303 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467ACcD:d:Fg:G:hi:L:l:Oo:p:rRt:v:X:xw:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -635,7 +635,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt_1;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id_1,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -645,7 +645,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id_1,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Transfer variable type to table. NOTE: Using var/xtr_nbr containing all variables (processed, fixed) */
(void)nco_var_typ_trv(xtr_nbr,var,trv_tbl);
@@ -837,7 +837,7 @@ main(int argc,char **argv)
/* Change missing_value of var_prc_2, if any, to missing_value of var_prc_1, if any */
has_mss_val=nco_mss_val_cnf(var_prc_1[idx],var_prc_2[idx]);
- /* NB: fxm: use tally to determine when to "unweight" answer? TODO */
+ /* NB: fxm: use tally to determine when to "unweight" answer? TODO */
(void)nco_var_add_tll_ncflint(var_prc_1[idx]->type,var_prc_1[idx]->sz,has_mss_val,var_prc_1[idx]->mss_val,var_prc_out[idx]->tally,var_prc_1[idx]->val,var_prc_2[idx]->val);
/* Re-cast output variable to original type */
diff --git a/src/nco/ncks.c b/src/nco/ncks.c
index b67384e..839d822 100644
--- a/src/nco/ncks.c
+++ b/src/nco/ncks.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncks.c,v 1.769 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncks -- netCDF Kitchen Sink */
@@ -28,7 +28,7 @@
University of California, Irvine
Irvine, CA 92697-3100 */
-/* URL: http://nco.cvs.sf.net/nco/nco/src/nco/ncks.c
+/* URL: https://github.com/czender/nco/tree/master/src/nco/ncks.c
Usage:
ncks ~/nco/data/in.nc
@@ -45,7 +45,7 @@
ncks -H -C -v three_dmn_rec_var -d time,,,2 ~/nco/data/in.nc
ncks -H -C -v lon -d lon,3,1 ~/nco/data/in.nc
ncks -M -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc
- ncks -O -v one -p http://thredds-test.ucar.edu/thredds/dodsC/testdods in.nc ~/foo.nc
+ ncks -O -v one -p http://thredds-testa.ucar.edu/thredds/dodsC/testdods in.nc ~/foo.nc
ncks -O -G foo ~/nco/data/in.nc ~/foo.nc
ncks -O -G :-5 -v v7 ~/nco/data/in_grp.nc ~/foo.nc
ncks -O -G level3name:-5 -v v7 ~/nco/data/in_grp.nc ~/foo.nc
@@ -155,10 +155,12 @@ main(int argc,char **argv)
nco_bool RM_RMT_FL_PST_PRC=True; /* Option R */
nco_bool WRT_TMP_FL=True; /* [flg] Write output to temporary file */
nco_bool flg_cln=True; /* [flg] Clean memory prior to exit */
+ nco_bool flg_rgr=False; /* [flg] Regrid */
char **fl_lst_abb=NULL; /* Option a */
char **fl_lst_in;
char **grp_lst_in=NULL;
+ char **rgr_arg=NULL; /* [sng] Regridding arguments */
char **var_lst_in=NULL;
char *aux_arg[NC_MAX_DIMS];
char *cmd_ln;
@@ -172,13 +174,19 @@ main(int argc,char **argv)
char *fl_out_tmp=NULL_CEWI;
char *fl_pth=NULL; /* Option p */
char *fl_pth_lcl=NULL; /* Option l */
+ char *fl_scrip=NULL; /* [sng] SCRIP file name */
char *lmt_arg[NC_MAX_DIMS];
char *opt_crr=NULL; /* [sng] String representation of current long-option name */
char *optarg_lcl=NULL; /* [sng] Local copy of system optarg */
char *ppc_arg[NC_MAX_VARS]; /* [sng] PPC arguments */
char *rec_dmn_nm=NULL; /* [sng] Record dimension name */
- char *fl_nm_scrip=NULL; /* [sng] SCRIP file name */
char *rec_dmn_nm_fix=NULL; /* [sng] Record dimension name (Original input name without _fix prefix) */
+ char *rgr_in=NULL; /* [sng] File containing fields to be regridded */
+ char *rgr_out=NULL; /* [sng] File containing regridded fields */
+ char *rgr_grd_src=NULL; /* [sng] File containing input grid */
+ char *rgr_grd_dst=NULL; /* [sng] File containing destination grid */
+ char *rgr_map=NULL; /* [sng] File containing mapping weights from source to destination grid */
+ char *rgr_var=NULL; /* [sng] Variable for special regridding treatment */
char *smr_sng=NULL; /* [sng] File summary string */
char *smr_xtn_sng=NULL; /* [sng] File extended summary string */
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
@@ -187,8 +195,8 @@ main(int argc,char **argv)
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncks.c,v 1.769 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.769 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="34567aABb:CcD:d:FG:g:HhL:l:MmOo:Pp:qQrRs:uVv:X:xz-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -231,14 +239,15 @@ main(int argc,char **argv)
int md_open; /* [enm] Mode flag for nc_open() call */
int opt;
int ppc_nbr=0; /* [nbr] Number of PPC arguments */
+ int rgr_nbr=0; /* [nbr] Number of regridding arguments */
int rcd=NC_NOERR; /* [rcd] Return code */
int var_lst_in_nbr=0;
int var_nbr_fl;
int var_ntm_fl;
int xtr_nbr=0; /* xtr_nbr will not otherwise be set for -c with no -v */
-/* DYW */
- kvmap_sct *sld_nfo=NULL; /* [sct] Container for SLD/SCRIP information */
+ /* DYW */
+ kvm_sct *sld_nfo=NULL; /* [sct] Container for SLD/SCRIP information */
md5_sct *md5=NULL; /* [sct] MD5 configuration */
@@ -352,12 +361,18 @@ main(int argc,char **argv)
{"ppc",required_argument,0,0}, /* [nbr] Precision-preserving compression, i.e., number of total or decimal significant digits */
{"precision_preserving_compression",required_argument,0,0}, /* [nbr] Precision-preserving compression, i.e., number of total or decimal significant digits */
{"quantize",required_argument,0,0}, /* [nbr] Precision-preserving compression, i.e., number of total or decimal significant digits */
+ {"rgr",required_argument,0,0}, /* [sng] Regridding */
+ {"regridding",required_argument,0,0}, /* [sng] Regridding */
+ {"rgr_in",required_argument,0,0}, /* [sng] File containing fields to be regridded */
+ {"rgr_out",required_argument,0,0}, /* [sng] File containing regridded fields */
+ {"rgr_grd_src",required_argument,0,0}, /* [sng] File containing input grid */
+ {"rgr_grd_dst",required_argument,0,0}, /* [sng] File containing destination grid */
+ {"rgr_map",required_argument,0,0}, /* [sng] File containing mapping weights from source to destination grid */
+ {"rgr_var",required_argument,0,0}, /* I [sng] Variable for special regridding treatment */
+ {"scrip",required_argument,0,0}, /* SCRIP file */
{"tst_udunits",required_argument,0,0},
{"xml_spr_chr",required_argument,0,0}, /* [flg] Separator for XML character types */
{"xml_spr_nmr",required_argument,0,0}, /* [flg] Separator for XML numeric types */
-/* DYW */
- {"scrip",required_argument,0,0}, /* SCRIP file */
-/* DYW end */
/* Long options with short counterparts */
{"3",no_argument,0,'3'},
{"4",no_argument,0,'4'},
@@ -536,9 +551,9 @@ main(int argc,char **argv)
nco_exit(EXIT_SUCCESS);
} /* endif "lbr" */
if(!strcmp(opt_crr,"scrip")){
- fl_nm_scrip=strdup(optarg);
- sld_nfo=(kvmap_sct *)nco_malloc(BUFSIZ*sizeof(kvmap_sct));
- hdlscrip(fl_nm_scrip,sld_nfo);
+ fl_scrip=strdup(optarg);
+ sld_nfo=(kvm_sct *)nco_malloc(BUFSIZ*sizeof(kvm_sct));
+ nco_scrip_read(fl_scrip,sld_nfo);
} /* endif "scrip" */
if(!strcmp(opt_crr,"mk_rec_dmn") || !strcmp(opt_crr,"mk_rec_dim")) rec_dmn_nm=strdup(optarg);
if(!strcmp(opt_crr,"mpi_implementation")){
@@ -566,8 +581,20 @@ main(int argc,char **argv)
if(!strcmp(opt_crr,"rad") || !strcmp(opt_crr,"retain_all_dimensions") || !strcmp(opt_crr,"orphan_dimensions") || !strcmp(opt_crr,"rph_dmn")) RETAIN_ALL_DIMS=True;
if(!strcmp(opt_crr,"ram_all") || !strcmp(opt_crr,"create_ram") || !strcmp(opt_crr,"diskless_all")) RAM_CREATE=True; /* [flg] Open (netCDF3) file(s) in RAM */
if(!strcmp(opt_crr,"ram_all") || !strcmp(opt_crr,"open_ram") || !strcmp(opt_crr,"diskless_all")) RAM_OPEN=True; /* [flg] Create file in RAM */
+ if(!strcmp(opt_crr,"rgr") || !strcmp(opt_crr,"regridding")){
+ flg_rgr=True;
+ rgr_nbr++;
+ rgr_arg=(char **)nco_realloc(rgr_arg,rgr_nbr*sizeof(char *));
+ rgr_arg[rgr_nbr-1]=(char *)strdup(optarg);
+ } /* endif "rgr" */
+ if(!strcmp(opt_crr,"rgr_in")) rgr_in=(char *)strdup(optarg);
+ if(!strcmp(opt_crr,"rgr_out")) rgr_out=(char *)strdup(optarg);
+ if(!strcmp(opt_crr,"rgr_grd_src")) rgr_grd_src=(char *)strdup(optarg);
+ if(!strcmp(opt_crr,"rgr_grd_dst")) rgr_grd_dst=(char *)strdup(optarg);
+ if(!strcmp(opt_crr,"rgr_map")) rgr_map=(char *)strdup(optarg);
+ if(!strcmp(opt_crr,"rgr_var")) rgr_var=(char *)strdup(optarg);
if(!strcmp(opt_crr,"secret") || !strcmp(opt_crr,"scr") || !strcmp(opt_crr,"shh")){
- (void)fprintf(stdout,"Hidden/unsupported NCO options:\nCompiler used\t\t--cmp, --compiler\nCopyright\t\t--cpy, --copyright, --license\nHidden functions\t--scr, --ssh, --secret\nLibrary used\t\t--lbr, --library\nMemory clean\t\t--mmr_cln, --cln, --clean\nMemory dirty\t\t--mmr_drt, --drt, --dirty\nMPI implementation\t--mpi_implementation\nNo-clobber files\t--no_clb, --no-clobber\nPseudonym\t\t--pseudonym, -Y (ncra only)\nSpinlock\t\t--spinlock\nStreams\t\t\t--srm\nSysconf\t\t\t--sy [...]
+ (void)fprintf(stdout,"Hidden/unsupported NCO options:\nCompiler used\t\t--cmp, --compiler\nCopyright\t\t--cpy, --copyright, --license\nHidden functions\t--scr, --ssh, --secret\nLibrary used\t\t--lbr, --library\nMemory clean\t\t--mmr_cln, --cln, --clean\nMemory dirty\t\t--mmr_drt, --drt, --dirty\nMPI implementation\t--mpi_implementation\nNo-clobber files\t--no_clb, --no-clobber\nPseudonym\t\t--pseudonym, -Y (ncra only)\nRegridding\t\t--rgr...\nSpinlock\t\t--spinlock\nStreams\t\t\t [...]
nco_exit(EXIT_SUCCESS);
} /* endif "shh" */
if(!strcmp(opt_crr,"srm")) PRN_SRM=True; /* [flg] Print ncStream */
@@ -815,7 +842,7 @@ main(int argc,char **argv)
if(RAM_OPEN) md_open=NC_NOWRITE|NC_DISKLESS; else md_open=NC_NOWRITE;
rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
- /* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list*/
+ /* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list */
(void)nco_bld_trv_tbl(in_id,trv_pth,lmt_nbr,lmt_arg,aux_nbr,aux_arg,MSA_USR_RDR,FORTRAN_IDX_CNV,grp_lst_in,grp_lst_in_nbr,var_lst_in,xtr_nbr,EXTRACT_ALL_COORDINATES,GRP_VAR_UNN,GRP_XTR_VAR_XCL,EXCLUDE_INPUT_LIST,EXTRACT_ASSOCIATED_COORDINATES,nco_pck_plc_nil,&flg_dne,trv_tbl);
/* Were all user-specified dimensions found? */
@@ -907,7 +934,20 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt;
- /* Inititialize, decode, and set PPC information */
+ /* Regridding */
+ if(flg_rgr){
+ rgr_sct rgr_nfo;
+ /* Initialize regridding structure */
+ rgr_in=(char *)strdup(fl_in);
+ rcd=nco_rgr_ini(in_id,rgr_arg,rgr_nbr,rgr_in,rgr_out,rgr_grd_src,rgr_grd_dst,rgr_map,rgr_var,&rgr_nfo);
+ rgr_nfo.fl_out_tmp=nco_fl_out_open(rgr_nfo.fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&rgr_nfo.out_id);
+ /* Regrid fields */
+ rcd=nco_rgr_ctl(&rgr_nfo);
+ /* Change from NCO_NOERR to NC_NOERR */
+ rcd=NC_NOERR;
+ } /* endif !flg_rgr */
+
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -917,7 +957,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Define extracted groups, variables, and attributes in output file */
(void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,PRN_GLB_METADATA,PRN_VAR_METADATA,RETAIN_ALL_DIMS,nco_pck_plc_nil,rec_dmn_nm,trv_tbl);
@@ -948,9 +988,7 @@ main(int argc,char **argv)
rcd+=nco_ddra((char *)NULL,(char *)NULL,&ddra_info);
ddra_info.tmr_flg=nco_tmr_rgl;
/* Write extracted data to output file */
- if(PRN_VAR_DATA) {
- (void)nco_xtr_wrt(in_id,out_id,gpe,fp_bnr,md5,HAVE_LIMITS,trv_tbl);
- }
+ if(PRN_VAR_DATA) (void)nco_xtr_wrt(in_id,out_id,gpe,fp_bnr,md5,HAVE_LIMITS,trv_tbl);
/* [fnc] Close unformatted binary data file */
if(fp_bnr) (void)nco_bnr_close(fp_bnr,fl_bnr);
@@ -958,7 +996,7 @@ main(int argc,char **argv)
if(nco_dbg_lvl_get() == 14){
(void)nco_wrt_trv_tbl(in_id,trv_tbl,True);
(void)nco_wrt_trv_tbl(out_id,trv_tbl,True);
- } /* endif */
+ } /* endif dbg */
/* Close output file and move it from temporary to permanent location */
(void)nco_fl_out_cls(fl_out,fl_out_tmp,out_id);
@@ -1047,7 +1085,7 @@ main(int argc,char **argv)
if(!prn_flg.new_fmt){
- /* Traditional printing order/format */
+ /* Traditional printing order/format always used prior to 201307 */
if(PRN_GLB_METADATA){
int dmn_ids_rec[NC_MAX_DIMS]; /* [ID] Record dimension IDs array */
int nbr_rec_lcl; /* [nbr] Number of record dimensions visible in root */
@@ -1106,12 +1144,12 @@ close_and_free:
if(fl_bnr) fl_bnr=(char *)nco_free(fl_bnr);
if(rec_dmn_nm) rec_dmn_nm=(char *)nco_free(rec_dmn_nm);
/* DYW */
- if(fl_nm_scrip){
- fl_nm_scrip=(char *)nco_free(fl_nm_scrip);
+ if(fl_scrip){
+ fl_scrip=(char *)nco_free(fl_scrip);
idx=0;
- if(nco_dbg_lvl > nco_dbg_fl) while(sld_nfo[idx].key) nco_kvmap_prn(sld_nfo[idx++]);
- if(sld_nfo) nco_kvmaps_free(sld_nfo);
- } /* endif fl_nm_scrip */
+ if(nco_dbg_lvl > nco_dbg_fl) while(sld_nfo[idx].key) nco_kvm_prn(sld_nfo[idx++]);
+ if(sld_nfo) nco_kvm_free(sld_nfo);
+ } /* endif fl_scrip */
/* NCO-generic clean-up */
/* Free individual strings/arrays */
if(cmd_ln) cmd_ln=(char *)nco_free(cmd_ln);
@@ -1134,6 +1172,7 @@ close_and_free:
for(idx=0;idx<aux_nbr;idx++) aux_arg[idx]=(char *)nco_free(aux_arg[idx]);
for(idx=0;idx<lmt_nbr;idx++) lmt_arg[idx]=(char *)nco_free(lmt_arg[idx]);
for(idx=0;idx<ppc_nbr;idx++) ppc_arg[idx]=(char *)nco_free(ppc_arg[idx]);
+ if(rgr_nbr > 0) rgr_arg=nco_sng_lst_free(rgr_arg,rgr_nbr);
/* Free chunking information */
for(idx=0;idx<cnk_nbr;idx++) cnk_arg[idx]=(char *)nco_free(cnk_arg[idx]);
if(cnk_nbr > 0) cnk.cnk_dmn=(cnk_dmn_sct **)nco_cnk_lst_free(cnk.cnk_dmn,cnk_nbr);
@@ -1159,4 +1198,3 @@ close_and_free:
nco_exit_gracefully();
return EXIT_SUCCESS;
} /* end main() */
-
diff --git a/src/nco/nco.h b/src/nco/nco.h
index 01de5fa..b76c8fc 100644
--- a/src/nco/nco.h
+++ b/src/nco/nco.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco.h,v 1.538 2015/02/07 04:39:39 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF Operator (NCO) definitions */
@@ -126,11 +126,11 @@ extern "C" {
/* Valid netCDF4 deflation levels (dfl_lvl) range from 0..9 inclusive
Variables with dfl_lvl == 0 return true for compression yet are not deflated
Calling deflation routine with dfl_lvl == 0 wastes time _unless_ user wishes
- to uncompress variable is currently deflated with dfl_lvl != 0.
+ to uncompress variable that is currently deflated with dfl_lvl != 0.
Undefined dfl_lvl indicates user has not yet specified and intended dfl_lvl
This undefined value must be less than zero (and not equal to zero) so that
if(dfl_lvl >= 0) deflate(); only calls deflate() when user requests it.
- Setting dfl_lvl == 0 decompresses variable */
+ Setting dfl_lvl == 0 decompresses already compressed variables */
#define NCO_DFL_LVL_UNDEFINED -1
/* netcdf.h defines four NC_FORMAT tokens: NC_FORMAT_CLASSIC, ...
@@ -239,6 +239,17 @@ extern "C" {
char *nco_mss_val_sng_get(void){return nco_mss_val_sng;} /* [sng] Missing value attribute name */
char *nco_not_mss_val_sng_get(void){return nco_not_mss_val_sng;} /* [sng] Not missing value attribute name */
+#ifdef ENABLE_ESMF
+ /* csz 20150320
+ Define these only in main() files not in original location in ESMC_CoordSys.h
+ Otherwise any file #including ESMC.h inadvertently includes these constants multiple times
+ Should be defined as externals that resolve to single definition in main()
+ sudo cp ~/nco/src/nco/ESMC_CoordSys.h /usr/local/include # Linux
+ sudo cp ~/nco/src/nco/ESMC_CoordSys.h /opt/local/include/esmf # MacOS MacPorts */
+ const double ESMC_CoordSys_Deg2Rad= 0.01745329251994329547437;
+ const double ESMC_CoordSys_Rad2Deg=57.29577951308232286464772;
+#endif /* !ENABLE_ESMF */
+
#else /* MAIN_PROGRAM_FILE is NOT defined, i.e., current file does not contain main() */
/* External references to global variables are declared as extern here
@@ -262,7 +273,7 @@ extern "C" {
# define NC_VERSION_PATCH 0
#endif /* !NC_VERSION_PATCH */
#ifndef NC_VERSION_NOTE
-# define NC_VERSION_NOTE "" /* My be blank */
+# define NC_VERSION_NOTE "" /* May be blank */
#endif /* !NC_VERSION_NOTE */
#ifndef NC_VERSION
# define NC_VERSION "3.6.0"
@@ -281,17 +292,17 @@ extern "C" {
# define NCO_VERSION_MINOR 4
#endif /* !NCO_VERSION_MINOR */
#ifndef NCO_VERSION_PATCH
-# define NCO_VERSION_PATCH 8
+# define NCO_VERSION_PATCH 9
#endif /* !NCO_VERSION_PATCH */
#ifndef NCO_VERSION_NOTE
-# define NCO_VERSION_NOTE "" /* My be blank */
+# define NCO_VERSION_NOTE "" /* May be blank */
#endif /* !NCO_VERSION_NOTE */
#ifndef NCO_LIB_VERSION
/* Define NC_LIB_VERSION as three-digit number for arithmetic comparisons by CPP */
# define NCO_LIB_VERSION ( NCO_VERSION_MAJOR * 100 + NCO_VERSION_MINOR * 10 + NCO_VERSION_PATCH )
#endif /* !NCO_LIB_VERSION */
#ifndef NCO_VERSION
-# define NCO_VERSION "4.4.8"
+# define NCO_VERSION "4.4.9"
#endif /* !NCO_VERSION */
/* Compatibility tokens new to netCDF4 netcdf.h: */
@@ -335,6 +346,12 @@ extern "C" {
#ifndef NC_FLETCHER32
# define NC_FLETCHER32 1
#endif
+#ifndef NC_NOSHUFFLE
+# define NC_NOSHUFFLE 0
+#endif
+#ifndef NC_SHUFFLE
+# define NC_SHUFFLE 1
+#endif
/* Six compatibility tokens not all available until netCDF 3.6.1 netcdf.h
NC_64BIT_OFFSET is used (so far) only in nco_fl_utl.c */
@@ -860,6 +877,32 @@ extern "C" {
nco_bool PRN_VAR_METADATA; /* [flg] Print variable metadata */
} prn_fmt_sct;
+ /* Regrid structure */
+ typedef struct{ /* rgr_sct */
+ char *drc_tps; /* [sng] Data directory for Tempest grids, meshes, and weights */
+ char *fl_grd_src; /* [sng] File containing input grid */
+ char *fl_grd_dst; /* [sng] File containing destination grid */
+ char *fl_in; /* [sng] File containing fields to be regridded */
+ char *fl_out; /* [sng] File containing regridded fields */
+ char *fl_out_tmp; /* [sng] Temporary file containing regridded fields */
+ char *fl_map; /* [sng] File containing mapping weights from source to destination grid */
+ char **rgr_arg; /* [sng] Regridding arguments */
+ char *var_nm; /* [sng] Variable for special regridding treatment */
+ int rgr_nbr; /* [nbr] Number of regridding arguments */
+ int in_id; /* [id] Input netCDF file ID */
+ int out_id; /* [id] Output netCDF file ID */
+ nco_bool flg_usr_rqs; /* [flg] User requested regridding */
+ nco_bool flg_grd_src; /* [flg] User-specified input grid */
+ nco_bool flg_grd_dst; /* [flg] User-specified destination grid */
+ nco_bool flg_map; /* [flg] User-specified mapping weights */
+ } rgr_sct;
+
+ /* Key-value structure */
+ typedef struct{
+ char *key;
+ char *val;
+ } kvm_sct;
+
/* Attribute structure */
typedef struct{ /* att_sct */
char *nm;
diff --git a/src/nco/nco_att_utl.c b/src/nco/nco_att_utl.c
index fbe03de..bb0a056 100644
--- a/src/nco/nco_att_utl.c
+++ b/src/nco/nco_att_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_att_utl.c,v 1.181 2015/01/28 23:33:08 zender Exp $ */
+/* $Header$ */
/* Purpose: Attribute utilities */
@@ -228,7 +228,7 @@ nco_aed_prc /* [fnc] Process single attribute edit for single variable */
/* Check if file is netCDF3 classic with netCDF4 library
If so, do not employ rename trick
- NB: create global- rather than local-scope variable for output file format? */
+ NB: create global rather than local-scope variable for output file format? */
{ /* Temporary scope for fl_fmt */
int fl_fmt;
(void)nco_inq_format(nc_id,&fl_fmt);
@@ -239,7 +239,8 @@ nco_aed_prc /* [fnc] Process single attribute edit for single variable */
flg_fmt_netCDF4 && /* Output file is netCDF4 and ... */
aed.att_nm && /* 20130419: Verify att_nm exists before using it in strcmp() below. att_nm does not exist when user leaves field blank. Fix provided by Etienne Tourigny. */
!strcmp(aed.att_nm,nco_mss_val_sng_get()) && /* ... attribute is missing value and ... */
- aed.mode != aed_delete){ /* ... we are not deleting attribute */
+ aed.mode != aed_delete && /* ... we are not deleting attribute */
+ NC_LIB_VERSION < 434){ /* netCDF library does not contain fix to NCF-187 */
/* Rename existing attribute to netCDF4-safe name
After modifying missing value attribute with netCDF4-safe name below,
we will rename attribute to original missing value name. */
diff --git a/src/nco/nco_att_utl.h b/src/nco/nco_att_utl.h
index 562d058..03c9e37 100644
--- a/src/nco/nco_att_utl.h
+++ b/src/nco/nco_att_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_att_utl.h,v 1.51 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Attribute utilities */
diff --git a/src/nco/nco_aux.c b/src/nco/nco_aux.c
index ac7e615..b1be468 100644
--- a/src/nco/nco_aux.c
+++ b/src/nco/nco_aux.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.c,v 1.86 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Copyright (C) 1995--2015 Charlie Zender
This file is part of NCO, the netCDF Operators. NCO is free software.
diff --git a/src/nco/nco_aux.h b/src/nco/nco_aux.h
index a062333..9df5adf 100644
--- a/src/nco/nco_aux.h
+++ b/src/nco/nco_aux.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_aux.h,v 1.36 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Sub-set cell-based grids using auxiliary coordinate variable */
diff --git a/src/nco/nco_bnr.c b/src/nco/nco_bnr.c
index 20618df..1844668 100644
--- a/src/nco/nco_bnr.c
+++ b/src/nco/nco_bnr.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_bnr.c,v 1.28 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Binary write utilities */
diff --git a/src/nco/nco_bnr.h b/src/nco/nco_bnr.h
index a1f1351..a792c94 100644
--- a/src/nco/nco_bnr.h
+++ b/src/nco/nco_bnr.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_bnr.h,v 1.23 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Binary write utilities */
diff --git a/src/nco/nco_cln_utl.c b/src/nco/nco_cln_utl.c
index 188c53e..1a237db 100644
--- a/src/nco/nco_cln_utl.c
+++ b/src/nco/nco_cln_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cln_utl.c,v 1.54 2015/02/03 17:58:35 zender Exp $ */
+/* $Header$ */
/* Purpose: Calendar utilities */
diff --git a/src/nco/nco_cln_utl.h b/src/nco/nco_cln_utl.h
index 78617f6..92e0c21 100644
--- a/src/nco/nco_cln_utl.h
+++ b/src/nco/nco_cln_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cln_utl.h,v 1.42 2015/02/04 02:44:45 zender Exp $ */
+/* $Header$ */
/* Purpose: Calendar utilities */
diff --git a/src/nco/nco_cnf_dmn.c b/src/nco/nco_cnf_dmn.c
index 414889a..d64417a 100644
--- a/src/nco/nco_cnf_dmn.c
+++ b/src/nco/nco_cnf_dmn.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnf_dmn.c,v 1.96 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Conform dimensions between variables */
diff --git a/src/nco/nco_cnf_dmn.h b/src/nco/nco_cnf_dmn.h
index 899e95b..23d639a 100644
--- a/src/nco/nco_cnf_dmn.h
+++ b/src/nco/nco_cnf_dmn.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnf_dmn.h,v 1.41 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Conform dimensions */
diff --git a/src/nco/nco_cnf_typ.c b/src/nco/nco_cnf_typ.c
index 23bd2a9..a87e25a 100644
--- a/src/nco/nco_cnf_typ.c
+++ b/src/nco/nco_cnf_typ.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnf_typ.c,v 1.82 2015/02/07 04:39:39 zender Exp $ */
+/* $Header$ */
/* Purpose: Conform variable types */
diff --git a/src/nco/nco_cnf_typ.h b/src/nco/nco_cnf_typ.h
index cc4052c..b2943fb 100644
--- a/src/nco/nco_cnf_typ.h
+++ b/src/nco/nco_cnf_typ.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnf_typ.h,v 1.45 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Conform variable types */
diff --git a/src/nco/nco_cnk.c b/src/nco/nco_cnk.c
index 5ab816a..f83e602 100644
--- a/src/nco/nco_cnk.c
+++ b/src/nco/nco_cnk.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnk.c,v 1.157 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO utilities for chunking */
@@ -110,7 +110,7 @@ nco_dfl_case_cnk_map_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(cnk_map) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_cnk_map_err()";
(void)fprintf(stdout,"%s: ERROR switch(cnk_map) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(cnk_map) statements are fully enumerated. Exiting...\n",fnc_nm);
@@ -123,7 +123,7 @@ nco_dfl_case_cnk_plc_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(cnk_plc) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_cnk_plc_err()";
(void)fprintf(stdout,"%s: ERROR switch(cnk_plc) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(cnk_plc) statements are fully enumerated. Exiting...\n",fnc_nm);
@@ -132,7 +132,8 @@ nco_dfl_case_cnk_plc_err(void) /* [fnc] Print error and exit for illegal switch(
int /* [rcd] Return code */
nco_cnk_ini /* [fnc] Create structure with all chunking information */
-(const char * const fl_out, /* I [sng] Output filename */
+(const int in_id, /* I [id] netCDF input file ID */
+ const char * const fl_out, /* I [sng] Output filename */
CST_X_PTR_CST_PTR_CST_Y(char,cnk_arg), /* I [sng] List of user-specified chunksizes */
const int cnk_nbr, /* I [nbr] Number of chunksizes specified */
const int cnk_map, /* I [enm] Chunking map */
@@ -195,23 +196,36 @@ nco_cnk_ini /* [fnc] Create structure with all chunking information */
if(cnk->cnk_nbr > 0) cnk->cnk_dmn=nco_cnk_prs(cnk_nbr,cnk_arg);
/* Set actual chunk policy and map to defaults as necessary
- 20140821: Until today, defaults for map and policy were set independently
+ 20140821: Until today, defaults for map and policy (rd1 and g2d, respectively) were set independently
20141013: Tweak defaults so chunking always called (required to preserve input chunking)
+ 20150514: Use different defaults if input is netCDF3 (i.e., completely unchunked)
Now we consider three distinct cases:
1. Neither map nor policy was explicitly set, and something else, e.g., size, was
2. User set map not policy
3. User set policy not map */
if(cnk_map == nco_cnk_map_nil && cnk_plc == nco_cnk_plc_nil){
- cnk->cnk_map=nco_cnk_map_xst;
- cnk->cnk_plc=nco_cnk_plc_xst;
+ /* Does _input_ file support chunking? */
+ int fl_in_fmt=NCO_FORMAT_UNDEFINED; /* [enm] Input file format */
+ (void)nco_inq_format(in_id,&fl_in_fmt);
+ if(fl_in_fmt == NC_FORMAT_NETCDF4 && fl_in_fmt == NC_FORMAT_NETCDF4_CLASSIC){
+ /* Input is netCDF4 so preserve chunking unless otherwise specified */
+ cnk->cnk_map=nco_cnk_map_xst;
+ cnk->cnk_plc=nco_cnk_plc_xst;
+ }else{
+ /* Input is netCDF3 so choose chunking judiciously unless otherwise specified */
+ if(nco_dbg_lvl_get() > nco_dbg_scl) (void)fprintf(stderr,"%s: INFO Input file format %s does not support chunking and no chunking policy or map specified so output chunking format will use NCO (not netCDF) defaults\n",nco_prg_nm_get(),nco_fmt_sng(fl_in_fmt));
+ cnk->cnk_map=nco_cnk_map_nco;
+ cnk->cnk_plc=nco_cnk_plc_nco;
+ } /* endif dbg */
} /* endif */
- if(cnk_map == nco_cnk_map_nil && cnk_plc != nco_cnk_plc_nil) cnk->cnk_map=nco_cnk_map_rd1;
- if(cnk_plc == nco_cnk_plc_nil && cnk_map != nco_cnk_map_nil) cnk->cnk_plc=nco_cnk_plc_g2d;
+
+ if(cnk->cnk_map == nco_cnk_map_nil && cnk->cnk_plc != nco_cnk_plc_nil) cnk->cnk_map=nco_cnk_map_rd1;
+ if(cnk->cnk_plc == nco_cnk_plc_nil && cnk->cnk_map != nco_cnk_map_nil) cnk->cnk_plc=nco_cnk_plc_g2d;
/* NCO-recommended chunking map is expected to change over time
cnk_map=nco assigns current NCO-recommended map */
- if(cnk_map == nco_cnk_map_nco) cnk->cnk_map=nco_cnk_map_rd1;
- if(cnk_map == nco_cnk_plc_nco) cnk->cnk_plc=nco_cnk_plc_nco;
+ if(cnk->cnk_map == nco_cnk_map_nco) cnk->cnk_map=nco_cnk_map_rew;
+ if(cnk->cnk_plc == nco_cnk_plc_nco) cnk->cnk_plc=nco_cnk_plc_all;
return rcd;
} /* end nco_cnk_ini() */
@@ -387,10 +401,13 @@ nco_cnk_plc_get /* [fnc] Convert user-specified chunking policy to key */
if(!strcmp(nco_cnk_plc_sng,"g3d")) return nco_cnk_plc_g3d;
if(!strcmp(nco_cnk_plc_sng,"cnk_g3d")) return nco_cnk_plc_g3d;
if(!strcmp(nco_cnk_plc_sng,"plc_g3d")) return nco_cnk_plc_g3d;
- if(!strcmp(nco_cnk_plc_sng,"xpl")) return nco_cnk_plc_xpl;
+ if(!strcmp(nco_cnk_plc_sng,"nco")) return nco_cnk_plc_nco;
+ if(!strcmp(nco_cnk_plc_sng,"cnk_nco")) return nco_cnk_plc_nco;
+ if(!strcmp(nco_cnk_plc_sng,"plc_nco")) return nco_cnk_plc_nco;
if(!strcmp(nco_cnk_plc_sng,"r1d")) return nco_cnk_plc_r1d;
if(!strcmp(nco_cnk_plc_sng,"cnk_r1d")) return nco_cnk_plc_r1d;
if(!strcmp(nco_cnk_plc_sng,"plc_r1d")) return nco_cnk_plc_r1d;
+ if(!strcmp(nco_cnk_plc_sng,"xpl")) return nco_cnk_plc_xpl;
if(!strcmp(nco_cnk_plc_sng,"cnk_xpl")) return nco_cnk_plc_xpl;
if(!strcmp(nco_cnk_plc_sng,"plc_xpl")) return nco_cnk_plc_xpl;
if(!strcmp(nco_cnk_plc_sng,"xst")) return nco_cnk_plc_xst;
@@ -879,7 +896,7 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
} /* endif cnk_sz_scl */
if(FIRST_CALL && nco_dbg_lvl_get() >= nco_dbg_scl && nco_dbg_lvl_get() != nco_dbg_dev){
- (void)fprintf(stdout,"%s: INFO User requested chunking or unchunking\n",nco_prg_nm_get());
+ (void)fprintf(stdout,"%s: INFO User requests (or compression or record dimension requires) chunking or unchunking\n",nco_prg_nm_get());
if(nco_dbg_lvl_get() >= nco_dbg_scl && nco_dbg_lvl_get() != nco_dbg_dev){
(void)fprintf(stdout,"cnk_plc, cnk_map: %s, %s\n",nco_cnk_plc_sng_get(cnk_plc),nco_cnk_map_sng_get(cnk_map));
(void)fprintf(stdout,"cnk_sz_scl, cnk_sz_byt, cnk_min_byt: %lu, %lu, %lu\n",(unsigned long)cnk_sz_scl,(unsigned long)cnk_sz_byt,(unsigned long)cnk_min_byt);
@@ -967,7 +984,16 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
if(is_chunked){
/* Turn-off chunking for this variable */
if(nco_dbg_lvl_get() >= nco_dbg_var && nco_dbg_lvl_get() != nco_dbg_dev) (void)fprintf(stdout,"%s: INFO %s unchunking %s\n",nco_prg_nm_get(),fnc_nm,var_nm);
- if(shuffle) (void)fprintf(stdout,"%s: WARNING %s reports variable %s has shuffle flag set before unchunking. Expect the worst.",nco_prg_nm_get(),fnc_nm,var_nm);
+ if(shuffle){
+ /* 20150415: If shuffle is set on input variable then NCO also sets it on output variable
+ nco_cnk_sz_set_trv() is first place NCO knows whether to unchunk variable
+ Variables defined with shuffle must be chunked, therefore instruct variable to be stored as not shuffled
+ Unset shuffle before unchunking variable, otherwise nc_def_var_chunking() returns NC_EINVAL */
+ if(nco_dbg_lvl_get() >= nco_dbg_var && nco_dbg_lvl_get() != nco_dbg_dev) (void)fprintf(stdout,"%s: INFO %s turning-off shuffle filter before unchunking variable %s\n",nco_prg_nm_get(),fnc_nm,var_nm);
+ shuffle=NC_NOSHUFFLE;
+ deflate=0;
+ (void)nco_def_var_deflate(grp_id_out,var_id_out,shuffle,deflate,(int)0);
+ } /* !shuffle */
/* Redundant since default netCDF srg_typ = NC_CONTIGUOUS for variables that need not be chunked */
(void)nco_def_var_chunking(grp_id_out,var_id_out,srg_typ,cnk_sz);
}else{ /* !chunked */
@@ -1072,7 +1098,10 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
/* When not hyperslabbed, use input record dimension size, except workaround zero size
reported for new record dimensions before anything is written */
if(dmn_cmn[dmn_idx].sz == 0) cnk_sz[dmn_idx]=1UL; else cnk_sz[dmn_idx]=dmn_cmn[dmn_idx].sz;
- /* 20140518: As of netCDF 4.3.2, employ smarter defaults for record dimension in 1-D variables */
+ /* 20140518: As of netCDF 4.3.2, employ smarter defaults for record dimension in 1-D variables
+ 20150505: This "smarter" treatment of 1-D record variables consistently leads to cnk_sz ~ 512k
+ This seems ridiculously large since many datasets have O(1) time slices but many 1-D in time variables
+ Perhaps lose this 1-D exception that scales chunksize with blocksize? */
if(dmn_nbr == 1) cnk_sz[dmn_idx]=NCO_CNK_SZ_BYT_R1D_DFL/typ_sz;
}else{ /* !NON_HYP_DMN */
/* ... and when hyperslabbed, use user-specified count */
@@ -1101,6 +1130,10 @@ nco_cnk_sz_set_trv /* [fnc] Set chunksize parameters (GTT version of nco_cnk_sz_
double cnk_sz_lft_dbl;
size_t cnk_sz_lft;
+ /* 20150515: Intent is to set chunksizes for variables that require more than one chunk (evaluated by cnk_sz_byt)
+ If variable is much smaller than a single chunk, then simply use dimension sizes set above */
+ if(var_sz_byt < cnk_sz_byt) goto cnk_xpl_override;
+
cnk_val_nbr=cnk_sz_byt/(double)typ_sz;
/* Use default sizes on all righter dimensions than first record dimension */
diff --git a/src/nco/nco_cnk.h b/src/nco/nco_cnk.h
index 1e432d8..6b53b33 100644
--- a/src/nco/nco_cnk.h
+++ b/src/nco/nco_cnk.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnk.h,v 1.44 2015/02/03 02:08:55 zender Exp $ */
+/* $Header$ */
/* Purpose: Description (definition) of chunking functions */
@@ -76,7 +76,8 @@ nco_cnk_plc_sng_get /* [fnc] Convert chunking policy enum to string */
int /* [rcd] [enm] Return code */
nco_cnk_ini /* [fnc] Create structure with all chunking information */
-(const char * const fl_out, /* I [sng] Output filename */
+(const int in_id, /* I [id] netCDF input file ID */
+ const char * const fl_out, /* I [sng] Output filename */
CST_X_PTR_CST_PTR_CST_Y(char,cnk_arg), /* I [sng] List of user-specified chunksizes */
const int cnk_nbr, /* I [nbr] Number of chunksizes specified */
const int cnk_map, /* I [enm] Chunking map */
diff --git a/src/nco/nco_cnv_arm.c b/src/nco/nco_cnv_arm.c
index 7faa456..b5ce202 100644
--- a/src/nco/nco_cnv_arm.c
+++ b/src/nco/nco_cnv_arm.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnv_arm.c,v 1.37 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: ARM conventions, e.g., http://www.arm.gov/data/time.stm */
@@ -139,7 +139,7 @@ nco_cnv_arm_time_install /* [fnc] Add time variable to concatenated ARM files */
(void)nco_def_var(nc_id,time_sng,NC_DOUBLE,1,&time_dmn_id,&time_id);
/* Set HDF Lempel-Ziv compression level, if requested */
- if(dfl_lvl >= 0) (void)nco_def_var_deflate(nc_id,time_id,(int)True,(int)True,dfl_lvl);
+ if(dfl_lvl >= 0) (void)nco_def_var_deflate(nc_id,time_id,(int)NC_SHUFFLE,(int)True,dfl_lvl);
/* Add attributes for time variable */
(void)nco_put_att(nc_id,time_id,units_sng,NC_CHAR,(long int)(strlen(att_units)+1UL),(const void *)att_units);
diff --git a/src/nco/nco_cnv_arm.h b/src/nco/nco_cnv_arm.h
index cf1620a..bb4c1a5 100644
--- a/src/nco/nco_cnv_arm.h
+++ b/src/nco/nco_cnv_arm.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnv_arm.h,v 1.31 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: ARM conventions */
diff --git a/src/nco/nco_cnv_csm.c b/src/nco/nco_cnv_csm.c
index 5b4a37b..5265d05 100644
--- a/src/nco/nco_cnv_csm.c
+++ b/src/nco/nco_cnv_csm.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnv_csm.c,v 1.118 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: CCM/CCSM/CF conventions */
@@ -41,7 +41,7 @@ nco_cnv_ccm_ccsm_cf_inq /* O [fnc] Check if file obeys CCM/CCSM/CF conventions *
if(rcd == NC_NOERR && att_typ == NC_CHAR){
/* Add one for NUL byte */
- att_val=(char *)nco_malloc(att_sz*nco_typ_lng(att_typ)+1);
+ att_val=(char *)nco_malloc(att_sz*nco_typ_lng(att_typ)+1L);
(void)nco_get_att(nc_id,NC_GLOBAL,cnv_sng,att_val,att_typ);
/* NUL-terminate convention attribute before using strcmp() */
att_val[att_sz]='\0';
@@ -225,15 +225,15 @@ nco_cnv_cf_crd_add /* [fnc] Add coordinates defined by CF convention */
} /* end nco_cnv_cf_crd_add() */
-int /* [rcd] Return code */
+int /* O [rcd] Return code */
nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
(const int out_id, /* I [id] netCDF file ID */
var_sct * const * const var, /* I [sct] Variable to reduce (e.g., average) (destroyed) */
const int var_nbr, /* I [nbr] Number of variables to be defined */
- dmn_sct * const * const dmn_rdc, /* I [sct] Dimensions over which to reduce variable */
- const int dmn_nbr_rdc, /* I [sct] Number of dimensions to reduce variable over */
+ dmn_sct * const * const dmn_rdc, /* I [sct] Dimensions over which to reduce variable */
+ const int dmn_nbr_rdc, /* I [sct] Number of dimensions to reduce variable over */
const int nco_op_typ, /* I [enm] Operation type, default is average */
- gpe_sct *gpe, /* [sng] Group Path Editing (GPE) structure */
+ gpe_sct *gpe, /* I [sng] Group Path Editing (GPE) structure */
const trv_tbl_sct * const trv_tbl) /* I [sct] Traversal table */
{
/* Purpose: Add/modify cell_methods attribute according to CF convention
@@ -271,9 +271,11 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
char att_op_sng[23]; /* [sng] Operation type (longest is nco_op_mabs which translates to "maximum_absolute_value") */
+ char *att_val=NULL; /* [sng] Coordinates attribute */
char *att_val_cpy; /* [sng] Copy of attribute */
char *grp_out_fll=NULL; /* [sng] Group name */
-
+ char *sbs_ptr; /* [sng] Pointer to substring */
+
int *dmn_mch; /* [idx] Indices of dimensions reduced in this variable */
int dmn_idx_rdc;
@@ -285,8 +287,15 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
int var_idx;
int var_out_id; /* [ID] Variable ID (output) */
+ long int att_lng; /* [nbr] Length of attribute string */
+
nc_type att_typ; /* [nbr] Attribute type */
+ nco_bool mlt_dmn_rdc; /* [flg] Multiple dimension reduction flag */
+
+ size_t dmn_sng_lng; /* [nbr] Length of dimension string */
+ size_t sbs_sng_lng; /* [nbr] Length of substring */
+
trv_sct *var_trv=NULL; /* [sct] Variable GTT object */
/* Initialize unchanging structure members */
@@ -320,7 +329,7 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
aed.sz=0L;
dmn_nbr_mch=0;
- /* Format: blank-separated phrases of form "dmn1[, dmn2[...]]: op_typ" */
+ /* cell_methods format: blank-separated phrases of form "dmn1[, dmn2[...]]: op_typ" */
for(dmn_idx_var=0;dmn_idx_var<var_trv->nbr_dmn;dmn_idx_var++){
for(dmn_idx_rdc=0;dmn_idx_rdc<dmn_nbr_rdc;dmn_idx_rdc++){
assert(dmn_rdc[dmn_idx_rdc]->nm_fll);
@@ -337,6 +346,7 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
/* Preserve rule to always return averages (never extrema or other statistics) of coordinates */
if(var[var_idx]->is_crd_var) nco_op_typ_lcl=nco_op_avg; else nco_op_typ_lcl=nco_op_typ;
+
/* NUL-terminate before concatenation */
att_op_sng[0]='\0';
switch(nco_op_typ_lcl){
@@ -376,7 +386,8 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
(void)strcat(aed.val.cp,att_op_sng);
/* Does variable already have "cell_methods" attribute? */
- rcd=nco_inq_att_flg(grp_out_id,var_out_id,"cell_methods",&att_typ,(long *)NULL);
+ strcpy(aed.att_nm,"cell_methods");
+ rcd=nco_inq_att_flg(grp_out_id,var_out_id,aed.att_nm,&att_typ,(long *)NULL);
if(rcd == NC_NOERR){
aed.mode=aed_append;
if(att_typ == NC_STRING) (void)fprintf(stderr,"%s: WARNING %s reports existing cell_methods attribute for variable %s is type NC_STRING. Unpredictable results...\n",nco_prg_nm_get(),fnc_nm,aed.var_nm);
@@ -395,9 +406,63 @@ nco_cnv_cf_cll_mth_add /* [fnc] Add cell_methods attributes */
/* Edit attribute */
(void)nco_aed_prc(grp_out_id,var_out_id,aed);
+ /* 20150308 */
+ /* Does variable already have "coordinates" attribute? */
+ strcpy(aed.att_nm,"coordinates");
+ rcd=nco_inq_att_flg(grp_out_id,var_out_id,aed.att_nm,&att_typ,&att_lng);
+ if(rcd == NC_NOERR && att_typ == NC_CHAR){
+ /* Remove reduced dimensions from coordinates string */
+ /* coordinates format: blank-separated names of form "dmn1 [dmn2 [...]] dmnN" */
+ /* Add room for NUL-terminator */
+ att_val=(char *)nco_malloc((att_lng+1L)*sizeof(char));
+ rcd=nco_get_att(grp_out_id,var_out_id,aed.att_nm,att_val,att_typ);
+ /* Reset value from previous use */
+ aed.val.cp[0]='\0';
+ att_val[att_lng]='\0';
+ mlt_dmn_rdc=False;
+ assert(rcd == NC_NOERR);
+ for(dmn_idx_var=0;dmn_idx_var<var_trv->nbr_dmn;dmn_idx_var++){
+ for(dmn_idx_rdc=0;dmn_idx_rdc<dmn_nbr_rdc;dmn_idx_rdc++){
+ /* Is reduced dimension in variable? */
+ if(!strcmp(var_trv->var_dmn[dmn_idx_var].dmn_nm_fll,dmn_rdc[dmn_idx_rdc]->nm_fll)){
+ if(mlt_dmn_rdc){
+ /* At least one other dimension has already been reduced/excised
+ Hence multiple dimensions of this variable may be reduced
+ Start next excision from ending point of last excision, not from disk-values */
+ strcpy(att_val,aed.val.cp);
+ att_lng=strlen(aed.val.cp);
+ } /* endif */
+ /* Is dimension in current (possibly locally-modified) "coordinates" attribute? NB: Assume short name not full name */
+ if((sbs_ptr=strstr(att_val,dmn_rdc[dmn_idx_rdc]->nm))){
+ /* Is this the only dimension in "coordinates" attribute? */
+ if(!strcmp(dmn_rdc[dmn_idx_rdc]->nm,att_val)){
+ /* Variable will become scalar so delete "coordinates" attribute */
+ aed.mode=aed_delete;
+ }else{ /* endif scalar */
+ /* Excise dimension from "coordinates" attribute */
+ dmn_sng_lng=strlen(dmn_rdc[dmn_idx_rdc]->nm);
+ sbs_sng_lng=(size_t)(sbs_ptr-att_val);
+ aed.mode=aed_overwrite;
+ aed.sz=att_lng-dmn_sng_lng;
+ aed.val.cp=(char *)nco_realloc(aed.val.cp,(aed.sz+1L)*sizeof(char));
+ strncpy(aed.val.cp,att_val,sbs_sng_lng);
+ aed.val.cp[sbs_sng_lng]='\0';
+ /* Allow for one space-separator */
+ if((sbs_ptr+dmn_sng_lng)[0] == ' ') strcat(aed.val.cp,sbs_ptr+dmn_sng_lng+1L); else strcat(aed.val.cp,sbs_ptr+dmn_sng_lng);
+ } /* endelse scalar */
+ /* Edit attribute */
+ (void)nco_aed_prc(grp_out_id,var_out_id,aed);
+ mlt_dmn_rdc=True;
+ } /* !match attribute */
+ } /* !match variable */
+ } /* dmn_idx_rdc */
+ } /* dmn_idx_var */
+ } /* endif attribute exists */
+
+ if(att_val) att_val=(char *)nco_free(att_val);
if(aed.val.cp) aed.val.cp=(char *)nco_free(aed.val.cp);
- } /* var_idx>=var_nbr */
+ } /* var_idx >= var_nbr */
if(aed.att_nm) aed.att_nm=(char *)nco_free(aed.att_nm);
if(dmn_mch) dmn_mch=(int *)nco_free(dmn_mch);
diff --git a/src/nco/nco_cnv_csm.h b/src/nco/nco_cnv_csm.h
index 8075fb9..639e109 100644
--- a/src/nco/nco_cnv_csm.h
+++ b/src/nco/nco_cnv_csm.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_cnv_csm.h,v 1.44 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: CCM/CCSM/CF conventions */
diff --git a/src/nco/nco_ctl.c b/src/nco/nco_ctl.c
index c443210..f19cece 100644
--- a/src/nco/nco_ctl.c
+++ b/src/nco/nco_ctl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_ctl.c,v 1.520 2015/02/09 23:29:38 zender Exp $ */
+/* $Header$ */
/* Purpose: Program flow control functions */
@@ -475,7 +475,7 @@ nco_dfl_case_tmr_typ_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(tmr_typ) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_tmr_typ_err()";
(void)fprintf(stdout,"%s: ERROR switch(tmr_typ) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(tmr_typ) statements are fully enumerated. Exiting...\n",fnc_nm);
@@ -696,7 +696,7 @@ nco_cnf_prn(void) /* [fnc] Print NCO configuration and help text */
#define TKN2YESNO(x) ((x+0) ? ("No"):("Yes"))
/* NB: Keep configuration option tokens consistent among configure.ac, bld/Makefile, and nco_ctl.c
Alphabetize list by first word in English text description of token */
- (void)fprintf(stdout,"Configuration Option:\tActive?\tMeaning or Reference:\nCheck _FillValue\t%s\thttp://nco.sf.net/nco.html#mss_val\nCheck missing_value\t%s\thttp://nco.sf.net/nco.html#mss_val\nDAP clients\t\t%s\thttp://nco.sf.net/nco.html#dap\nDebugging: Custom\t%s\tPedantic, bounds checking (slowest execution)\nDebugging: Symbols\t%s\tProduce symbols for debuggers (e.g., dbx, gdb)\nGNU Scientific Library\t%s\thttp://nco.sf.net/nco.html#gsl\nHDF4 support\t\t%s\thttp://nco.sf.net/nco [...]
+ (void)fprintf(stdout,"Configuration Option:\tActive?\tMeaning or Reference:\nCheck _FillValue\t%s\thttp://nco.sf.net/nco.html#mss_val\nCheck missing_value\t%s\thttp://nco.sf.net/nco.html#mss_val\nDAP clients\t\t%s\thttp://nco.sf.net/nco.html#dap\nDebugging: Custom\t%s\tPedantic, bounds checking (slowest execution)\nDebugging: Symbols\t%s\tProduce symbols for debuggers (e.g., dbx, gdb)\nESMF Regridding\t\t%s\tpre-alpha\nGNU Scientific Library\t%s\thttp://nco.sf.net/nco.html#gsl\nHDF4 su [...]
(!strcmp("_FillValue",nco_mss_val_sng_get())) ? "Yes" : "No",
(!strcmp("missing_value",nco_mss_val_sng_get())) ? "Yes" : "No",
#if defined(ENABLE_DAP) && (ENABLE_DAP)
@@ -714,6 +714,11 @@ nco_cnf_prn(void) /* [fnc] Print NCO configuration and help text */
#else /* !ENABLE_DEBUG_SYMBOLS */
"No",
#endif /* !ENABLE_DEBUG_SYMBOLS */
+#if defined(ENABLE_ESMF) && (ENABLE_ESMF)
+ "Yes",
+#else /* !ENABLE_ESMF */
+ "No",
+#endif /* !ENABLE_ESMF */
#if defined(ENABLE_GSL) && (ENABLE_GSL)
"Yes",
#else /* !ENABLE_GSL */
@@ -803,7 +808,7 @@ nco_nmn_get(void) /* [fnc] Return mnemonic that describes current NCO version */
{
/* Purpose: Return mnemonic describing current NCO version
Always Include terminal \n so mnemonic does not dangle */
- return "Grammys, Binder, Litter Box\n";
+ return "Tabu\n";
} /* end nco_nmn_get() */
char * /* O [sng] nm_in stripped of any path (i.e., program name stub) */
@@ -926,13 +931,17 @@ nco_usg_prn(void)
opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_crd] [--fl_fmt fmt] [-h] [--hdf] [--hdr_pad nbr] [-i var,val] [-L lvl] [-l path] [--msa] [--no_tmp_fl] [-O] [-o out.nc] [-p path] [--ppc ...] [-R] [-r] [--ram_all] [-t thr_nbr] [-v ...] [-X box] [-x] [-w wgt_1[,wgt_2]] in_1.nc in_2.nc [out.nc]\n");
break;
case ncks:
+#ifdef ENABLE_ESMF
+ opt_sng=(char *)strdup("[-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b fl_bnr] [--bfr sz] [-C] [-c] [--cdl] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_dmn dim] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [--grp_xtr_var_xcl] [-H] [-h] [--hdn] [--hdr_pad nbr] [-L lvl] [-l path] [-M] [-m] [--md5_dgs] [--md5_wrt] [--mk_rec_dmn dim] [--msa] [--no_blank] [--no_tmp_fl] [-O] [-o out.nc] [-P] [-p path] [--ppc ...] [...]
+#else /* !ENABLE_ESMF */
opt_sng=(char *)strdup("[-3] [-4] [-5] [-6] [-7] [-A] [-a] [-b fl_bnr] [--bfr sz] [-C] [-c] [--cdl] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fix_rec_dmn dim] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [--grp_xtr_var_xcl] [-H] [-h] [--hdn] [--hdr_pad nbr] [-L lvl] [-l path] [-M] [-m] [--md5_dgs] [--md5_wrt] [--mk_rec_dmn dim] [--msa] [--no_blank] [--no_tmp_fl] [-O] [-o out.nc] [-P] [-p path] [--ppc ...] [...]
+#endif /* !ENABLE_ESMF */
break;
case ncpdq:
opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [-a ...] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [-F] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-h] [--hdf] [--hdr_pad nbr] [-L lvl] [-l path] [-M pck_map] [--mrd] [--msa] [--no_tmp_fl] [-O] [-o out.nc] [-P pck_plc] [-p path] [--ppc ...] [-R] [-r] [--ram_all] [-t thr_nbr] [--unn] [-U] [-v ...] [-X box] [-x] in.nc [out.nc]\n");
break;
case ncra:
- opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [--dbl|flt] [-F] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-H] [-h] [--hdf] [--hdr_pad nbr] [-L lvl] [-l path] [--mro] [--msa] [-n ...] [--no_cll_mth] [--no_tmp_fl] [-O] [-o out.nc] [-p path] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [-t thr_nbr] [--unn] [-v ...] [-X box] [-x] [-y op_typ] in.nc [...]
+ opt_sng=(char *)strdup("[-3] [-4] [-6] [-7] [-A] [--bfr sz] [-C] [-c] [--cnk_byt sz] [--cnk_dmn nm,sz] [--cnk_map map] [--cnk_min min] [--cnk_plc plc] [--cnk_scl sz] [-D nco_dbg_lvl] [-d ...] [--dbl|flt] [-F] [--fl_fmt fmt] [-G grp:lvl] [-g ...] [-H] [-h] [--hdf] [--hdr_pad nbr] [-L lvl] [-l path] [--mro] [--msa] [-n ...] [--no_cll_mth] [--no_tmp_fl] [-O] [-o out.nc] [-p path] [--ppc ...] [-R] [-r] [--ram_all] [--rec_apn] [-t thr_nbr] [--unn] [-w wgt] [-v ...] [-X box] [-x] [-y op_t [...]
break;
case ncfe:
case ncge:
@@ -1070,6 +1079,14 @@ nco_usg_prn(void)
if(strstr(opt_sng,"--rad")) (void)fprintf(stdout," --orphan, --rph_dmn\tRetain or print all (including orphaned) dimensions\n");
if(strstr(opt_sng,"--ram_all")) (void)fprintf(stdout," --ram_all, --diskless_all\tOpen netCDF3 files and create output files in RAM\n");
if(strstr(opt_sng,"--rec_apn")) (void)fprintf(stdout," --rec_apn, --record_append\tAppend records directly to output file\n");
+#ifdef ENABLE_ESMF
+ if(strstr(opt_sng,"--rgr")) (void)fprintf(stdout," --rgr args\t\tTo activate regridding options use --rgr=Y\n");
+ if(strstr(opt_sng,"--rgr_grd_dst")) (void)fprintf(stdout," --rgr_grd_dst file\tDestination grid\n");
+ if(strstr(opt_sng,"--rgr_grd_src")) (void)fprintf(stdout," --rgr_grd_src file\tSource grid\n");
+ if(strstr(opt_sng,"--rgr_in")) (void)fprintf(stdout," --rgr_in file\tFile containing fields to be regridded\n");
+ if(strstr(opt_sng,"--rgr_out")) (void)fprintf(stdout," --rgr_out file\tFile containing regridded fields\n");
+ if(strstr(opt_sng,"--rgr_map")) (void)fprintf(stdout," --rgr_map file\tFile containing mapping weights from source to destination grid\n");
+#endif /* !ENABLE_ESMF */
if(strstr(opt_sng,"[-s")){
if(prg_lcl != ncap) (void)fprintf(stdout,"-s, --sng_fmt, --string format\tString format for text output\n");
if(prg_lcl == ncap) (void)fprintf(stdout,"-s, --spt, --script algebra\tAlgebraic command defining single output variable\n");
@@ -1091,6 +1108,7 @@ nco_usg_prn(void)
} /* end if */
/* if(strstr(opt_sng,"[-W]")) (void)fprintf(stdout,"-W\t\tNormalize by weight but not tally\n");*/
if(strstr(opt_sng,"[-w")){
+ if(prg_lcl == ncra) (void)fprintf(stdout,"-w, --wgt_var, --weight wgt\tPer-file weights or variable name\n");
if(prg_lcl == ncwa) (void)fprintf(stdout,"-w, --wgt_var, --weight wgt\tWeighting variable name\n");
if(prg_lcl == ncflint) (void)fprintf(stdout,"-w, --wgt_var, --weight wgt_1[,wgt_2] Weight(s) of file(s)\n");
} /* end if */
diff --git a/src/nco/nco_ctl.h b/src/nco/nco_ctl.h
index b92f919..bbf0d3d 100644
--- a/src/nco/nco_ctl.h
+++ b/src/nco/nco_ctl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_ctl.h,v 1.49 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Program flow control functions */
diff --git a/src/nco/nco_dbg.c b/src/nco/nco_dbg.c
index 647dcbc..2a05613 100644
--- a/src/nco/nco_dbg.c
+++ b/src/nco/nco_dbg.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_dbg.c,v 1.23 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Debugging */
diff --git a/src/nco/nco_dbg.h b/src/nco/nco_dbg.h
index 3201710..1e5419f 100644
--- a/src/nco/nco_dbg.h
+++ b/src/nco/nco_dbg.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_dbg.h,v 1.21 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Debugging */
diff --git a/src/nco/nco_dmn_utl.c b/src/nco/nco_dmn_utl.c
index a4f13e6..0c7372c 100644
--- a/src/nco/nco_dmn_utl.c
+++ b/src/nco/nco_dmn_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_dmn_utl.c,v 1.71 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Dimension utilities */
diff --git a/src/nco/nco_dmn_utl.h b/src/nco/nco_dmn_utl.h
index a9aa4fb..e559cfe 100644
--- a/src/nco/nco_dmn_utl.h
+++ b/src/nco/nco_dmn_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_dmn_utl.h,v 1.51 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Dimension utilities */
diff --git a/src/nco/nco_fl_utl.c b/src/nco/nco_fl_utl.c
index 4de4646..4dee582 100644
--- a/src/nco/nco_fl_utl.c
+++ b/src/nco/nco_fl_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_fl_utl.c,v 1.254 2015/02/05 23:08:39 zender Exp $ */
+/* $Header$ */
/* Purpose: File manipulation */
@@ -234,7 +234,7 @@ nco_fl_cp /* [fnc] Copy first file to second */
int rcd;
const int fmt_chr_nbr=4;
- /* Only bother to perform system() call if files are not identical */
+ /* Perform system() call iff files are not identical */
if(!strcmp(fl_src,fl_dst)){
if(nco_dbg_lvl_get() >= nco_dbg_fl) (void)fprintf(stderr,"%s: INFO Temporary and final files %s are identical---no need to copy.\n",nco_prg_nm_get(),fl_src);
return;
@@ -1395,7 +1395,7 @@ nco_fl_open /* [fnc] Open file using appropriate buffer size hints and verbosity
/* Set undefined extended file type to actual extended filetype */
nco_fmt_xtn_set(fl_fmt_xtn_crr);
} /* endif */
- if(nco_dbg_lvl_get() >= nco_dbg_fl) (void)fprintf(stderr,"%s: INFO Extended filetype of %s is %s, mode = %d\n",nco_prg_nm_get(),fl_nm,nco_fmt_xtn_sng(fl_fmt_xtn_crr),mode);
+ if(nco_dbg_lvl_get() >= nco_dbg_scl) (void)fprintf(stderr,"%s: INFO Extended filetype of %s is %s, mode = %d\n",nco_prg_nm_get(),fl_nm,nco_fmt_xtn_sng(fl_fmt_xtn_crr),mode);
return rcd;
} /* end nco_fl_open() */
@@ -1597,7 +1597,8 @@ nco_fl_out_open /* [fnc] Open output file subject to availability and user input
which both requires them to work on local (not remote or DAP) files,
and prevents them from creating intermediate files.
Changing towards greater NCO-wide consistency would be a good thing?
- No complaints yet about ncatted/ncrename locality requirement, though */
+ In ~20 years since release, though, only one complaint (from Chris Lynnes)
+ that ncatted/ncrename have this locality requirement */
if(False){
if(nco_prg_id_get() == ncrename || nco_prg_id_get() == ncatted){
/* ncrename and ncatted allow single filename without question */
diff --git a/src/nco/nco_fl_utl.h b/src/nco/nco_fl_utl.h
index 6f71757..a1a044f 100644
--- a/src/nco/nco_fl_utl.h
+++ b/src/nco/nco_fl_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_fl_utl.h,v 1.78 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: File manipulation */
diff --git a/src/nco/nco_getopt.c b/src/nco/nco_getopt.c
index 9fbf6d3..d670e70 100644
--- a/src/nco/nco_getopt.c
+++ b/src/nco/nco_getopt.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_getopt.c,v 1.4 2010/07/30 00:40:28 zender Exp $ */
+/* $Header$ */
/* "my_getopt" package is "drop-in" replacement for GNU getopt()
by Benjamin Sittler <bsittler at iname.com> downloaded from
diff --git a/src/nco/nco_getopt.h b/src/nco/nco_getopt.h
index 32ddf42..87cdc72 100644
--- a/src/nco/nco_getopt.h
+++ b/src/nco/nco_getopt.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_getopt.h,v 1.2 2003/01/09 01:05:05 zender Exp $ */
+/* $Header$ */
/* "my_getopt" package is "drop-in" replacement for GNU getopt()
by Benjamin Sittler <bsittler at iname.com> downloaded from
diff --git a/src/nco/nco_grp_trv.c b/src/nco/nco_grp_trv.c
index 6b20787..374a64a 100644
--- a/src/nco/nco_grp_trv.c
+++ b/src/nco/nco_grp_trv.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.c,v 1.311 2015/02/04 02:44:45 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF4 traversal storage */
diff --git a/src/nco/nco_grp_trv.h b/src/nco/nco_grp_trv.h
index 7690bbf..75816d7 100644
--- a/src/nco/nco_grp_trv.h
+++ b/src/nco/nco_grp_trv.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_trv.h,v 1.126 2015/02/04 02:44:45 zender Exp $ */
+/* $Header$ */
/* Purpose: netCDF4 traversal storage */
diff --git a/src/nco/nco_grp_utl.c b/src/nco/nco_grp_utl.c
index e1b7a08..d6b2d76 100644
--- a/src/nco/nco_grp_utl.c
+++ b/src/nco/nco_grp_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.c,v 1.1511 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* Purpose: Group utilities */
@@ -327,102 +327,84 @@ nco_def_grp_rcr /* [fnc] Define groups */
return rcd;
} /* end nco_grp_dfn_rcr() */
-int
-nco_get_sls_chr_cnt /* [fnc] Get number of slash characterrs in a string path */
-(char * const nm_fll) /* I [sct] Full name */
+int /* [nbr] Number of slash characters */
+nco_get_sls_chr_cnt /* [fnc] Count slash characters in a string path */
+(char * const nm_fll) /* I [sng] Full name */
{
- char *ptr_chr; /* [sng] Pointer to character '/' in full name */
- int nbr_sls_chr=0; /* [nbr] Number of of slash characterrs in string path */
- int psn_chr; /* [nbr] Position of character '/' in in full name */
+ const char sls_chr='/'; /* [chr] Slash character */
+ char *ptr_chr; /* [sng] Pointer to character '/' in full name */
+ int sls_nbr=0; /* [nbr] Number of of slash characterrs in string path */
- if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"Looking '/' in \"%s\"...",nm_fll);
-
- ptr_chr=strchr(nm_fll,'/');
+ ptr_chr=strchr(nm_fll,sls_chr);
while(ptr_chr){
- psn_chr=ptr_chr-nm_fll;
-
- if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout," ::found at %d",psn_chr);
-
- ptr_chr=strchr(ptr_chr+1,'/');
-
- nbr_sls_chr++;
+ ptr_chr=strchr(ptr_chr+1,sls_chr);
+ sls_nbr++;
} /* end while */
- if(nco_dbg_lvl_get()== nco_dbg_old) (void)fprintf(stdout,"\n");
- return nbr_sls_chr;
-
+ return sls_nbr;
} /* nco_get_sls_chr_cnt() */
int
nco_get_sng_pth_sct /* [fnc] Get full name token structure (path components) */
(char * const nm_fll, /* I [sng] Full name */
- sng_pth_sct ***str_pth_lst) /* I/O [sct] List of path components */
+ sng_pth_sct ***sng_pth_lst) /* I/O [sct] List of path components */
{
/* Purpose: Break full path name into components separated by slash character (netCDF4 path separator)
-
- strtok()
- A sequence of calls to this function split str into tokens, which are sequences of contiguous characters
- separated by any of the characters that are part of delimiters.
-
- strchr() is used to get position of separator that corresponsds to each token
+ Uses strtok() to split string into tokens, sequences of contiguous characters separated by specified delimiters
+ Uses strchr() to get position of delimiter that separates tokens
Use case: "/g16/g16g1/lon1"
-
Token 0: g16
Token 1: g16g1
Token 2: lon1
Usage:
-
Get number of tokens in variable full name
- nbr_sls_chr_var=nco_get_sls_chr_cnt(var_trv->nm_fll);
+ sls_nbr_var=nco_get_sls_chr_cnt(var_trv->nm_fll);
- Alloc
- str_pth_lst_var=(sng_pth_sct **)nco_malloc(nbr_sls_chr_var*sizeof(sng_pth_sct *));
+ Allocation:
+ sng_pth_lst_var=(sng_pth_sct **)nco_malloc(sls_nbr_var*sizeof(sng_pth_sct *));
- Get token list in variable full name
- (void)nco_get_sng_pth_sct(var_trv->nm_fll,&str_pth_lst_var); */
+ Get token list in variable full name:
+ (void)nco_get_sng_pth_sct(var_trv->nm_fll,&sng_pth_lst_var); */
char *ptr_chr; /* [sng] Pointer to character '/' in full name */
- char *ptr_chr_tok; /* [sng] Pointer to character */
- int nbr_sls_chr=0; /* [nbr] Number of of slash characterrs in string path */
+ char *ptr_chr_tkn; /* [sng] Pointer to character */
+ int sls_nbr=0; /* [nbr] Number of of slash characterrs in string path */
int psn_chr; /* [nbr] Position of character '/' in in full name */
+ const char sls_chr='/'; /* [chr] Slash character */
+ const char sls_sng[]="/"; /* [sng] Slash string */
/* Duplicate original, since strtok() changes it */
- char *str=strdup(nm_fll);
+ char *sng=strdup(nm_fll);
- if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"Splitting \"%s\" into tokens:\n",str);
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"Splitting \"%s\" into tokens:\n",sng);
/* Get first token */
- ptr_chr_tok=strtok (str,"/");
-
- ptr_chr=strchr(nm_fll,'/');
+ ptr_chr_tkn=strtok(sng,sls_sng);
+ ptr_chr=strchr(nm_fll,sls_chr);
while(ptr_chr){
- if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"#%s ",ptr_chr_tok);
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"%s ",ptr_chr_tkn);
psn_chr=ptr_chr-nm_fll;
/* Store token and position */
- (*str_pth_lst)[nbr_sls_chr]=(sng_pth_sct *)nco_malloc(1*sizeof(sng_pth_sct));
-
- (*str_pth_lst)[nbr_sls_chr]->nm=strdup(ptr_chr_tok);
- (*str_pth_lst)[nbr_sls_chr]->psn=psn_chr;
+ (*sng_pth_lst)[sls_nbr]=(sng_pth_sct *)nco_malloc(sizeof(sng_pth_sct));
+ (*sng_pth_lst)[sls_nbr]->nm=strdup(ptr_chr_tkn);
+ (*sng_pth_lst)[sls_nbr]->psn=psn_chr;
/* Point where last token was found is kept internally by function */
- ptr_chr_tok=strtok(NULL,"/");
-
- ptr_chr=strchr(ptr_chr+1,'/');
-
- nbr_sls_chr++;
+ ptr_chr_tkn=strtok(NULL,sls_sng);
+ ptr_chr=strchr(ptr_chr+1,sls_chr);
+ sls_nbr++;
} /* end while */
- if(nco_dbg_lvl_get() == nco_dbg_old)(void)fprintf(stdout,"\n");
+ if(nco_dbg_lvl_get() == nco_dbg_old) (void)fprintf(stdout,"\n");
- str=(char *)nco_free(str);
-
- return nbr_sls_chr;
+ if(sng) sng=(char *)nco_free(sng);
+ return sls_nbr;
} /* nco_get_sls_chr_cnt() */
void
@@ -716,9 +698,9 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
flg_usr_mch_obj=False;
if(!obj_lst_in[obj_idx]){
- (void)fprintf(stderr,"%s: ERROR %s reports user-supplied %s name is empty\n",nco_prg_nm_get(),fnc_nm,(obj_typ == nco_obj_typ_grp) ? "group" : "variable");
+ (void)fprintf(stderr,"%s: ERROR %s reports user-supplied %s name is empty. HINT: Eliminate consecutive or trailing commas from the extraction list.\n",nco_prg_nm_get(),fnc_nm,(obj_typ == nco_obj_typ_grp) ? "group" : "variable");
nco_exit(EXIT_FAILURE);
- } /* end else */
+ } /* end if */
usr_sng=strdup(obj_lst_in[obj_idx]);
usr_sng_lng=strlen(usr_sng);
@@ -959,7 +941,8 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and c
void
nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
-(nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
+(nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
+ nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
/* Purpose: Convert extraction list to exclusion list
@@ -1014,9 +997,16 @@ nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
}else{
/* Block implements default (and only) behavior until 20140521,
i.e., extract all except exclude intersection of -g and -v arguments */
+ static short FIRST_WARNING=True;
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
trv_tbl->lst[idx_tbl].flg_xtr=!trv_tbl->lst[idx_tbl].flg_xtr; /* Toggle extraction flag */
trv_tbl->lst[idx_tbl].flg_xcl=True; /* Extraction flag was toggled by exclusion option */
+ if(!trv_tbl->lst[idx_tbl].flg_xtr && trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var && trv_tbl->lst[idx_tbl].is_crd_var){
+ if(FIRST_WARNING && EXTRACT_ASSOCIATED_COORDINATES){
+ (void)fprintf(stdout,"%s: HINT Explicitly excluding (with -x) a coordinate variable (like \"%s\") from the extraction list does not always remove the coordinate from output unless the -C option is also invoked to turn off extraction of coordinates of other variables. Otherwise, a coordinate you wish to exclude may be extracted in its capacity as coordinate-information for other extracted variables. Use \"-C -x -v crd_nm\" to guarantee crd_nm will not be output. See http://nco.sf.net/n [...]
+ FIRST_WARNING=False;
+ } /* !FIRST_WARNING */
+ } /* end if */
} /* end for */
} /* !GRP_XTR_VAR_XCL */
@@ -1047,10 +1037,10 @@ nco_xtr_crd_add /* [fnc] Add all coordinates to extraction
} /* end nco_xtr_crd_add() */
void
-nco_xtr_cf_add /* [fnc] Add to extraction list variables associated with CF convention */
-(const int nc_id, /* I [ID] netCDF file ID */
- const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", or "coordinates") */
- trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
+nco_xtr_cf_add /* [fnc] Add to extraction list variables associated with CF convention */
+(const int nc_id, /* I [ID] netCDF file ID */
+ const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", "climatology", or "coordinates") */
+ trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
/* Add to extraction list all variables associated with specified CF convention
Driver routine for nco_xtr_cf_prv_add()
@@ -1071,13 +1061,13 @@ nco_xtr_cf_add /* [fnc] Add to extraction list variables
} /* nco_xtr_cf_add() */
void
-nco_xtr_cf_prv_add /* [fnc] Add variables associated (via CF) with specified variable to extraction list */
-(const int nc_id, /* I [ID] netCDF file ID */
- const trv_sct * const var_trv, /* I [sct] Variable (object) */
- const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", or "coordinates") */
- trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
+nco_xtr_cf_prv_add /* [fnc] Add variables associated (via CF) with specified variable to extraction list */
+(const int nc_id, /* I [ID] netCDF file ID */
+ const trv_sct * const var_trv, /* I [sct] Variable (object) */
+ const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", "climatology", or "coordinates") */
+ trv_tbl_sct * const trv_tbl) /* I/O [sct] GTT (Group Traversal Table) */
{
- /* Detect associated variables specified by CF "ancillary_variables", "bounds", or "coordinates" convention
+ /* Detect associated variables specified by CF "ancillary_variables", "bounds", "climatology", or "coordinates" convention
Private routine called by nco_xtr_cf_add()
http://cfconventions.org/1.6.html#ancillary-data
http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.1/cf-conventions.html#coordinate-system */
@@ -1089,7 +1079,7 @@ nco_xtr_cf_prv_add /* [fnc] Add variables associated (via CF)
int grp_id; /* [id] Group ID */
int nbr_att; /* [nbr] Number of attributes */
- int nbr_cf; /* [nbr] Number of variables specified in CF attribute ("ancillary_variables", "bounds", or "coordinates") */
+ int nbr_cf; /* [nbr] Number of variables specified in CF attribute ("ancillary_variables", "bounds", "climatology", or "coordinates") */
int var_id; /* [id] Variable ID */
assert(var_trv->nco_typ == nco_obj_typ_var);
@@ -1391,12 +1381,15 @@ nco_get_prg_info(void) /* [fnc] Get program info */
strcpy(lbr_sng,nc_inq_libvers());
#if defined(ENABLE_NETCDF4) && defined(HAVE_NETCDF4_H)
rcd=400;
- /* Detect buggy netCDF version 4.1; other versions are irrelevant */
+ /* Detect buggy netCDF version 4.1 so that workarounds may be implemented
+ Other versions used to enable version-specific regression tests in NCO_rgr.pm */
if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '1'){rcd=410;}
else if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '3' && lbr_sng[3] == '.' && lbr_sng[4] == '0' ){rcd=430;}
else if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '3' && lbr_sng[3] == '.' && lbr_sng[4] == '1' ){rcd=431;}
else if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '3' && lbr_sng[3] == '.' && lbr_sng[4] == '2' ){rcd=432;}
+ /* NB: Same return values for 4.3.3 and 4.3.3.1 */
else if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '3' && lbr_sng[3] == '.' && lbr_sng[4] == '3' ){rcd=433;}
+ else if(lbr_sng[0] == '4' && lbr_sng[1] == '.' && lbr_sng[2] == '3' && lbr_sng[3] == '.' && lbr_sng[4] == '4' ){rcd=434;}
#endif /* HAVE_NETCDF4_H */
exit(rcd);
} /* end nco_get_prg_info() */
@@ -1753,7 +1746,7 @@ nco_xtr_dfn /* [fnc] Define extracted groups, variables
if(nco_prg_id == ncge){
/* Is requested variable already in output file?
- fxm: Seems wasteful. Can ncge restrict definition to only variables in template group? i.e., satifying both flg_xtr and flg_nsm_tpl */
+ fxm: Seems wasteful. Can ncge restrict definition to only variables in template group? i.e., satisfying both flg_xtr and flg_nsm_tpl */
int rcd=nco_inq_varid_flg(grp_out_id,var_trv.nm,&var_out_id);
/* Yes, get outta' Dodge... avoid GPE failure on duplicate definition */
if(rcd == NC_NOERR) continue;
@@ -1866,7 +1859,7 @@ nco_xtr_wrt /* [fnc] Write extracted data to output fi
const gpe_sct * const gpe, /* I [sct] GPE structure */
FILE * const fp_bnr, /* I [fl] Unformatted binary output file handle */
const md5_sct * const md5, /* I [flg] MD5 Configuration */
- const nco_bool HAVE_LIMITS, /* I [flg] Dimension limits exist ( For convenience, ideally... not needed ) */
+ const nco_bool HAVE_LIMITS, /* I [flg] Dimension limits exist */
const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
{
/* Purpose: Write extracted variables to output file */
@@ -1881,6 +1874,9 @@ nco_xtr_wrt /* [fnc] Write extracted data to output fi
/* 20120309 Special case to improve copy speed on large blocksize filesystems (MM3s) */
USE_MM3_WORKAROUND=nco_use_mm3_workaround(nc_id_in,fl_out_fmt);
+ /* Workaround currently copies variable-at-a-time or record-at-a-time does not handle limits
+ The workaround could be modified to handle limits
+ Until then, though, the workaround is incompatible with limits */
if(HAVE_LIMITS) USE_MM3_WORKAROUND=False;
if(USE_MM3_WORKAROUND){
@@ -4022,7 +4018,7 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
const trv_sct * const var_trv, /* I [sct] Object to write (variable) */
const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
{
- /* Purpose: nco_malloc() and return a completed var_sct; traversal version of nco_var_fll() */
+ /* Purpose: Allocate and return a completed var_sct; traversal version of nco_var_fll() */
char dmn_nm[NC_MAX_NAME+1]; /* [sng] Dimension name */
@@ -4095,7 +4091,7 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
/* Loop dimensions */
for(int idx_dmn=0;idx_dmn<var->nbr_dim;idx_dmn++){
- /* Dimension ID for variable, used to get dimension object in input list */
+ /* Dimension ID for variable, used to get dimension object in input list */
dmn_id=dmn_in_id_var[idx_dmn];
assert(var->dmn_id[idx_dmn] == dmn_id);
@@ -4107,7 +4103,7 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
(void)nco_inq_dim(grp_id,dmn_id,dmn_nm,&dmn_sz);
assert((size_t)dmn_sz == dmn_trv->sz);
- assert(strcmp(dmn_nm,dmn_trv->nm) == 0);
+ assert(!strcmp(dmn_nm,dmn_trv->nm));
/* Get hyperslabbed count */
dmn_cnt=-1L;
@@ -4200,8 +4196,9 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
if(idx_dmn != var->nbr_dim) break;
} /* Check variable for duplicate dimensions */
- /* Treat variables associated with "bounds" and "coordinates" attributes as coordinates */
+ /* Treat variables associated with "bounds", "climatology", and "coordinates" attributes as coordinates */
if(nco_is_spc_in_bnd_att(var->nc_id,var->id)) var->is_crd_var=True;
+ if(nco_is_spc_in_clm_att(var->nc_id,var->id)) var->is_crd_var=True;
if(nco_is_spc_in_crd_att(var->nc_id,var->id)) var->is_crd_var=True;
/* Portions of variable structure depend on packing properties, e.g., typ_upk nco_pck_dsk_inq() fills in these portions harmlessly */
@@ -4209,7 +4206,7 @@ nco_var_fll_trv /* [fnc] Allocate variable structure and f
/* Set deflate and chunking to defaults */
var->dfl_lvl=NCO_DFL_LVL_UNDEFINED; /* [enm] Deflate level */
- var->shuffle=False; /* [flg] Turn on shuffle filter */
+ var->shuffle=NC_NOSHUFFLE; /* [flg] Turn on shuffle filter */
for(int idx=0;idx<var->nbr_dim;idx++) var->cnk_sz[idx]=(size_t)0L;
@@ -4849,7 +4846,9 @@ nco_cpy_var_dfn_trv /* [fnc] Define specified variable in output
/* Overwrite HDF Lempel-Ziv compression level, if requested */
if(dfl_lvl == 0) deflate=(int)False; else deflate=(int)True;
/* Turn-off shuffle when uncompressing otherwise chunking requests may fail */
- if(dfl_lvl == 0) shuffle=(int)False;
+ if(dfl_lvl == 0) shuffle=NC_NOSHUFFLE;
+ /* Shuffle never, to my knowledge, increases filesize, so shuffle by default when manually deflating */
+ if(dfl_lvl >= 0) shuffle=NC_SHUFFLE;
if(dfl_lvl >= 0) (void)nco_def_var_deflate(grp_out_id,var_out_id,shuffle,deflate,dfl_lvl);
} /* endif */
@@ -6618,7 +6617,7 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
const nco_bool flg_unn, /* I [flg] Select union of specified groups and variables */
const nco_bool GRP_XTR_VAR_XCL, /* I [flg] Extract matching groups, exclude matching variables */
const nco_bool EXCLUDE_INPUT_LIST, /* I [flg] Exclude rather than extract groups and variables specified with -v */
- const nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
+ const nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
const int nco_pck_plc, /* I [enm] Packing policy */
nco_dmn_dne_t **flg_dne, /* I/O [lst] Flag to check if input dimension -d "does not exist" */
trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
@@ -6689,7 +6688,7 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
(void)nco_xtr_mk(grp_lst_in,grp_lst_in_nbr,var_lst_in,var_xtr_nbr,EXCLUDE_INPUT_LIST,EXTRACT_ALL_COORDINATES,flg_unn,trv_tbl);
/* Change included variables to excluded variables */
- if(EXCLUDE_INPUT_LIST) (void)nco_xtr_xcl(GRP_XTR_VAR_XCL,trv_tbl);
+ if(EXCLUDE_INPUT_LIST) (void)nco_xtr_xcl(EXTRACT_ASSOCIATED_COORDINATES,GRP_XTR_VAR_XCL,trv_tbl);
/* Add all coordinate variables to extraction list */
if(EXTRACT_ALL_COORDINATES) (void)nco_xtr_crd_add(trv_tbl);
@@ -6707,6 +6706,7 @@ nco_bld_trv_tbl /* [fnc] Construct GTT, Group Traversal Ta
/* Implement CF "ancillary_variables", "bounds", and "coordinates" */
(void)nco_xtr_cf_add(nc_id,"ancillary_variables",trv_tbl);
(void)nco_xtr_cf_add(nc_id,"bounds",trv_tbl);
+ (void)nco_xtr_cf_add(nc_id,"climatology",trv_tbl);
(void)nco_xtr_cf_add(nc_id,"coordinates",trv_tbl);
} /* CNV_CCM_CCSM_CF */
@@ -6912,10 +6912,8 @@ nco_bld_lmt /* [fnc] Assign user specified dimension l
}else{
/* b) Dimension only (no coordinate variable for this dimension) */
-
dmn_trv_sct *ncd=trv_tbl->lst[idx_tbl].var_dmn[idx_var_dmn].ncd;
-
/* Limit is same as dimension in input file ? */
trv_tbl->lst[idx_tbl].var_dmn[idx_var_dmn].ncd->lmt_msa.NON_HYP_DMN=False;
@@ -7257,16 +7255,15 @@ nco_skp_var /* [fnc] Skip variable while doing record
} /* nco_skp_var() */
-var_sct * /* O [sct] Variable (weight/mask) */
-nco_var_get_wgt_trv /* [fnc] Retrieve weighting or mask variable */
-(const int nc_id, /* I [id] netCDF file ID */
- const char * const wgt_nm, /* I [sng] Weight variable name (relative or absolute) */
- const var_sct * const var, /* I [sct] Variable that needs the weight/mask variable */
- const trv_tbl_sct * const trv_tbl) /* I [lst] Traversal table */
+var_sct * /* O [sct] Variable (weight/mask) */
+nco_var_get_wgt_trv /* [fnc] Retrieve weighting or mask variable */
+(const int nc_id, /* I [id] netCDF file ID */
+ const char * const wgt_nm, /* I [sng] Weight variable name (relative or absolute) */
+ const var_sct * const var, /* I [sct] Variable that needs weight/mask */
+ const trv_tbl_sct * const trv_tbl) /* I [lst] Traversal table */
{
- /* Purpose: Return the variable (weight or mask) that is in scope of variable that needs the weight/mask variable */
+ /* Purpose: Return weight or mask variable closest in scope to specified variable */
- int nbr_wgt=0; /* [nbr] Number of weight/mask variables in file */
int grp_id; /* [ID] Group ID */
int var_id; /* [ID] Variable ID */
int idx_wgt; /* [nbr] Weight array counter */
@@ -7275,45 +7272,32 @@ nco_var_get_wgt_trv /* [fnc] Retrieve weighting or mask variab
/* If first character is '/' then assume absolute path */
- if ('/' == wgt_nm[0]){
-
- /* Obtain variable GTT object using full variable name */
+ if(wgt_nm[0] == '/'){
+ /* Absolute name given for weight. Straightforward extract and copy */
trv_sct *wgt_trv=trv_tbl_var_nm_fll(wgt_nm,trv_tbl);
-
var_sct *wgt_var;
-
- /* Obtain group ID from API */
(void)nco_inq_grp_full_ncid(nc_id,wgt_trv->grp_nm_fll,&grp_id);
-
- /* Get variable ID */
(void)nco_inq_varid(grp_id,wgt_trv->nm,&var_id);
-
/* Transfer from table to local variable */
wgt_var=nco_var_fll_trv(grp_id,var_id,wgt_trv,trv_tbl);
-
- /* Retrieve variable NB: using GTT version, that "knows" all the limits */
+ /* Retrieve variable NB: use GTT version, that "knows" all limits */
(void)nco_msa_var_get_trv(nc_id,wgt_var,trv_tbl);
-
return wgt_var;
-
- /* Relative name; search all names in table */
}else{
-
+ /* Relative name given for weight. Must identify most in-scopy match... */
+ int nbr_wgt=0; /* [nbr] Number of weight/mask variables in file */
trv_sct **wgt_trv=NULL; /* [sct] Weight/mask list */
-
+
for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++)
if(trv_tbl->lst[tbl_idx].nco_typ == nco_obj_typ_var && (!strcmp(trv_tbl->lst[tbl_idx].nm,wgt_nm))) nbr_wgt++;
/* Fill-in variable structure list for all weights */
wgt_trv=(trv_sct **)nco_malloc(nbr_wgt*sizeof(trv_sct *));
-
idx_wgt=0;
- /* Loop table */
for(unsigned tbl_idx=0;tbl_idx<trv_tbl->nbr;tbl_idx++){
-
- /* Filter by name */
- if(trv_tbl->lst[tbl_idx].nco_typ == nco_obj_typ_var && (!strcmp(trv_tbl->lst[tbl_idx].nm,wgt_nm))){
+ /* Filter by name */
+ if(trv_tbl->lst[tbl_idx].nco_typ == nco_obj_typ_var && !strcmp(trv_tbl->lst[tbl_idx].nm,wgt_nm)){
wgt_trv[idx_wgt]=&trv_tbl->lst[tbl_idx];
idx_wgt++;
} /* Filter variables */
@@ -7322,42 +7306,33 @@ nco_var_get_wgt_trv /* [fnc] Retrieve weighting or mask variab
/* Loop table */
for(unsigned idx_var=0;idx_var<trv_tbl->nbr;idx_var++){
- /* Find the variable that needs the weight */
- if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var
- && trv_tbl->lst[idx_var].flg_xtr
- && (strcmp(trv_tbl->lst[idx_var].nm_fll,var->nm_fll) == 0)){
- trv_sct var_trv=trv_tbl->lst[idx_var];
-
- /* Loop over weights */
- for(idx_wgt=0;idx_wgt<nbr_wgt;idx_wgt++){
- /* Same group */
- if(!strcmp(wgt_trv[idx_wgt]->grp_nm_fll,var_trv.grp_nm_fll)){
- var_sct *wgt_var;
-
- /* Obtain group ID from API */
- (void)nco_inq_grp_full_ncid(nc_id,wgt_trv[idx_wgt]->grp_nm_fll,&grp_id);
-
- /* Get variable ID */
- (void)nco_inq_varid(grp_id,wgt_trv[idx_wgt]->nm,&var_id);
-
- /* Transfer from table to local variable */
- wgt_var=nco_var_fll_trv(grp_id,var_id,wgt_trv[idx_wgt],trv_tbl);
-
- /* Retrieve variable NB: using GTT version, that "knows" all the limits */
- (void)nco_msa_var_get_trv(nc_id,wgt_var,trv_tbl);
-
- wgt_trv=(trv_sct **)nco_free(wgt_trv);
-
- return wgt_var;
-
- } /* Same group */
- } /* Loop over weights */
+ /* Find variable that needs weight/mask */
+ if(trv_tbl->lst[idx_var].nco_typ == nco_obj_typ_var &&
+ trv_tbl->lst[idx_var].flg_xtr &&
+ !strcmp(trv_tbl->lst[idx_var].nm_fll,var->nm_fll)){
+ trv_sct var_trv=trv_tbl->lst[idx_var];
+
+ /* Loop over weights */
+ for(idx_wgt=0;idx_wgt<nbr_wgt;idx_wgt++){
+ /* Same group */
+ if(!strcmp(wgt_trv[idx_wgt]->grp_nm_fll,var_trv.grp_nm_fll)){
+ var_sct *wgt_var;
+ (void)nco_inq_grp_full_ncid(nc_id,wgt_trv[idx_wgt]->grp_nm_fll,&grp_id);
+ (void)nco_inq_varid(grp_id,wgt_trv[idx_wgt]->nm,&var_id);
+ /* Transfer from table to local variable */
+ wgt_var=nco_var_fll_trv(grp_id,var_id,wgt_trv[idx_wgt],trv_tbl);
+ /* Retrieve variable NB: use GTT version, that "knows" all limits */
+ (void)nco_msa_var_get_trv(nc_id,wgt_var,trv_tbl);
+ wgt_trv=(trv_sct **)nco_free(wgt_trv);
+ return wgt_var;
+ } /* Same group */
+ } /* end loop loop over weights */
} /* Filter variables */
- } /* Loop table */
- }
-
+ } /* end loop over table */
+ } /* Relative name */
+
return NULL;
-
+
} /* nco_var_get_wgt_trv() */
void
@@ -7635,25 +7610,25 @@ nco_grp_var_lst /* [fnc] Export list of variable names fo
} /* end nco_grp_var_lst() */
-char * /* O [sng] Name of variable */
-nco_var_has_cf /* [fnc] Variable has CF-compliant attributes ("ancillary_variables", "bounds", or "coordinates") */
-(const int nc_id, /* I [ID] netCDF file ID */
- const trv_sct * const var_trv, /* I [sct] Variable (object) */
- const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", or "coordinates") */
- nco_bool *flg_cf_fnd) /* I/O [flg] CF variable was found */
+char * /* O [sng] Name of variable */
+nco_var_has_cf /* [fnc] Variable has CF-compliant attributes ("ancillary_variables", "bounds", "climatology", or "coordinates") */
+(const int nc_id, /* I [ID] netCDF file ID */
+ const trv_sct * const var_trv, /* I [sct] Variable (object) */
+ const char * const cf_nm, /* I [sng] CF convention ("ancillary_variables", "bounds", "climatology", or "coordinates") */
+ nco_bool *flg_cf_fnd) /* I/O [flg] CF variable was found */
{
- /* Detect associated variables specified by CF "ancillary_variables", "bounds", or "coordinates" convention
+ /* Detect associated variables specified by CF "ancillary_variables", "bounds", "climatology", or "coordinates" convention
http://cf-pcmdi.llnl.gov/documents/cf-conventions/1.1/cf-conventions.html#coordinate-system */
- const char dlm_sng[]=" "; /* [sng] Delimiter string */
+ const char dlm_sng[]=" "; /* [sng] Delimiter string */
- char **cf_lst; /* [sng] 1D array of list elements */
- char att_nm[NC_MAX_NAME+1L]; /* [sng] Attribute name */
+ char **cf_lst; /* [sng] 1D array of list elements */
+ char att_nm[NC_MAX_NAME+1L]; /* [sng] Attribute name */
- int grp_id; /* [id] Group ID */
- int nbr_att; /* [nbr] Number of attributes */
- int nbr_cf; /* [nbr] Number of coordinates specified in "bounds" or "coordinates" attribute */
- int var_id; /* [id] Variable ID */
+ int grp_id; /* [id] Group ID */
+ int nbr_att; /* [nbr] Number of attributes */
+ int nbr_cf; /* [nbr] Number of coordinates specified in "bounds" or "coordinates" attribute */
+ int var_id; /* [id] Variable ID */
assert(var_trv->nco_typ == nco_obj_typ_var);
@@ -7700,7 +7675,7 @@ nco_var_has_cf /* [fnc] Variable has CF-compliant attribu
/* Split list into separate coordinate names
Use nco_lst_prs_sgl_2D() not nco_lst_prs_2D() to avert TODO nco944 */
cf_lst=nco_lst_prs_sgl_2D(att_val,dlm_sng,&nbr_cf);
- /* ...for each associated variable in CF convention attribute, i.e., "ancillary_variables", "bounds", or "coordinates"... */
+ /* ...for each associated variable in CF convention attribute, i.e., "ancillary_variables", "bounds", "climatology", or "coordinates"... */
for(int idx_cf=0;idx_cf<nbr_cf;idx_cf++){
char *cf_lst_var=cf_lst[idx_cf];
if(!cf_lst_var) continue;
diff --git a/src/nco/nco_grp_utl.h b/src/nco/nco_grp_utl.h
index ef0a224..5b42a90 100644
--- a/src/nco/nco_grp_utl.h
+++ b/src/nco/nco_grp_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_grp_utl.h,v 1.520 2015/02/04 02:44:45 zender Exp $ */
+/* $Header$ */
/* Purpose: Group utilities */
@@ -147,7 +147,8 @@ nco_xtr_mk /* [fnc] Check -v and -g input names and cr
void
nco_xtr_xcl /* [fnc] Convert extraction list to exclusion list */
-(nco_bool GRP_XTR_VAR_XCL, /* [flg] Extract matching groups, exclude matching variables */
+(nco_bool EXTRACT_ASSOCIATED_COORDINATES, /* I [flg] Extract all coordinates associated with extracted variables? */
+ nco_bool GRP_XTR_VAR_XCL, /* [flg] Extract matching groups, exclude matching variables */
trv_tbl_sct * const trv_tbl); /* I/O [sct] GTT (Group Traversal Table) */
void
diff --git a/src/nco/nco_lmt.c b/src/nco/nco_lmt.c
index 3ba1112..32604af 100644
--- a/src/nco/nco_lmt.c
+++ b/src/nco/nco_lmt.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_lmt.c,v 1.214 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Hyperslab limits */
@@ -1327,7 +1327,9 @@ nco_lmt_evl_dmn_crd /* [fnc] Parse user-specified limits into hypersl
Tests:
ncks -D 11 -d lon,0.,90.,1 -v lon -H ~/nco/data/in_grp.nc
ncks -D 11 -d lon,0,1,1 -v lon -H ~/nco/data/in_grp.nc */
-
+
+ const char fnc_nm[]="nco_lmt_evl_dmn_crd()";
+
char *fl_udu_sng=NULL_CEWI; /* [sng] Store units attribute of coordinate dimension */
char *msg_sng=NULL_CEWI; /* [sng] Error message */
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
@@ -1496,6 +1498,9 @@ nco_lmt_evl_dmn_crd /* [fnc] Parse user-specified limits into hypersl
/* Get variable ID of coordinate */
(void)nco_inq_varid(grp_id,lmt.nm,&dim.cid);
+ /* Ensure variable is 1-D so is true coordinate */
+ (void)nco_inq_varid(grp_id,lmt.nm,&dim.cid);
+
char *cln_sng=NULL_CEWI;
fl_udu_sng=nco_lmt_get_udu_att(grp_id,var_id,"units"); /* Units attribute of coordinate variable */
@@ -1543,10 +1548,8 @@ nco_lmt_evl_dmn_crd /* [fnc] Parse user-specified limits into hypersl
/* Retrieve this coordinate */
int rcd;
rcd=nc_get_vara_double(grp_id,var_id,(const size_t *)&dmn_srt,(const size_t *)&dmn_sz,dmn_val_dp);
-
- /* Exit if read error */
+ if(rcd != NC_NOERR) (void)fprintf(stdout,"%s: ERROR %s unable to read user-specified coordinate %s. Ensure this coordinate variable is in file and is a 1-D array.\n",nco_prg_nm_get(),fnc_nm,lmt.nm);
if(rcd != NC_NOERR) nco_err_exit(rcd,"nc_get_vara_double()");
-
} /* end OpenMP critical */
/* Officially change type */
diff --git a/src/nco/nco_lmt.h b/src/nco/nco_lmt.h
index 4081c10..8c8cde0 100644
--- a/src/nco/nco_lmt.h
+++ b/src/nco/nco_lmt.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_lmt.h,v 1.71 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Hyperslab limits */
diff --git a/src/nco/nco_lst_utl.c b/src/nco/nco_lst_utl.c
index 877913a..f5602b5 100644
--- a/src/nco/nco_lst_utl.c
+++ b/src/nco/nco_lst_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_lst_utl.c,v 1.88 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Purpose: List utilities */
@@ -94,7 +94,7 @@ nco_fmt_sng_printf_subst /* [fnc] Replace printf() format statements */
fmt_sng_new=(char *)strdup(fmt_sng);
if(mch_nbr){
mch_psn_srt=result->rm_so; /* [B] Byte offset from start of string to start of substring */
- mch_psn_end=result->rm_eo-1L; /* [B] Byte offset from start of string to end of substring */
+ mch_psn_end=result->rm_eo-1L; /* [B] Byte offset from start of string to end of substring */
(void)nco_realloc(fmt_sng_new,(mch_psn_srt+strlen(fmt_sng)-mch_psn_end+2L)*sizeof(char));
(void)sprintf(fmt_sng_new+mch_psn_srt,"%%s");
(void)sprintf(fmt_sng_new+mch_psn_srt+2,"%s",fmt_sng+mch_psn_end+1);
diff --git a/src/nco/nco_lst_utl.h b/src/nco/nco_lst_utl.h
index ae60434..46d043b 100644
--- a/src/nco/nco_lst_utl.h
+++ b/src/nco/nco_lst_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_lst_utl.h,v 1.56 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: List utilities */
diff --git a/src/nco/nco_md5.c b/src/nco/nco_md5.c
index 1bd71b9..2ab4d49 100644
--- a/src/nco/nco_md5.c
+++ b/src/nco/nco_md5.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_md5.c,v 1.23 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO utilities for MD5 digests */
@@ -198,7 +198,7 @@ nco_md5_chk_ram /* [fnc] Perform MD5 digest on hyperslab in RAM */
L. Peter Deutsch
ghost at aladdin.com
*/
-/* $Id: nco_md5.c,v 1.23 2014/12/31 01:50:07 zender Exp $ */
+/* $Id$ */
/*
Independent implementation of MD5 (RFC 1321).
diff --git a/src/nco/nco_md5.h b/src/nco/nco_md5.h
index 5126657..3dc01cf 100644
--- a/src/nco/nco_md5.h
+++ b/src/nco/nco_md5.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_md5.h,v 1.17 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Description (definition) of MD5 digest functions */
@@ -94,7 +94,7 @@ extern "C" {
ghost at aladdin.com
*/
-/* $Id: nco_md5.h,v 1.17 2014/12/31 01:50:07 zender Exp $ */
+/* $Id$ */
/*
Independent implementation of MD5 (RFC 1321).
diff --git a/src/nco/nco_mmr.c b/src/nco/nco_mmr.c
index c9b359c..ab30b64 100644
--- a/src/nco/nco_mmr.c
+++ b/src/nco/nco_mmr.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mmr.c,v 1.67 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Memory management */
diff --git a/src/nco/nco_mmr.h b/src/nco/nco_mmr.h
index 8c38bf4..b663a15 100644
--- a/src/nco/nco_mmr.h
+++ b/src/nco/nco_mmr.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mmr.h,v 1.39 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Memory management */
diff --git a/src/nco/nco_mpi.h b/src/nco/nco_mpi.h
index 6ef0573..7743f39 100644
--- a/src/nco/nco_mpi.h
+++ b/src/nco/nco_mpi.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mpi.h,v 1.25 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: MPI utilities */
diff --git a/src/nco/nco_msa.c b/src/nco/nco_msa.c
index 26c0e84..150ed74 100644
--- a/src/nco/nco_msa.c
+++ b/src/nco/nco_msa.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_msa.c,v 1.284 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: Multi-slabbing algorithm */
diff --git a/src/nco/nco_msa.h b/src/nco/nco_msa.h
index 94f6563..8e68c25 100644
--- a/src/nco/nco_msa.h
+++ b/src/nco/nco_msa.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_msa.h,v 1.84 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: Multi-slabbing algorithm */
diff --git a/src/nco/nco_mss_val.c b/src/nco/nco_mss_val.c
index c6e5c01..d08d32e 100644
--- a/src/nco/nco_mss_val.c
+++ b/src/nco/nco_mss_val.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mss_val.c,v 1.60 2015/02/05 19:26:55 zender Exp $ */
+/* $Header$ */
/* Purpose: Missing value utilities */
diff --git a/src/nco/nco_mss_val.h b/src/nco/nco_mss_val.h
index c0323eb..fc8bd2e 100644
--- a/src/nco/nco_mss_val.h
+++ b/src/nco/nco_mss_val.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_mss_val.h,v 1.37 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Missing value utilities */
diff --git a/src/nco/nco_netcdf.c b/src/nco/nco_netcdf.c
index feb9486..8c4c3d2 100644
--- a/src/nco/nco_netcdf.c
+++ b/src/nco/nco_netcdf.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.c,v 1.257 2015/01/08 20:37:08 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO wrappers for netCDF C library */
@@ -534,6 +534,9 @@ nco_ndn_sng /* [fnc] Convert netCDF endianness enum to string for hidden attribu
void
nco_dfl_case_nc_type_err(void) /* [fnc] Print error and exit for illegal switch(nc_type) case */
{
+ /* Purpose: Print error and exit when switch statement reaches illegal default case
+ Routine reduces bloat because many switch() statements invoke this functionality */
+
/* Purpose: Convenience routine for printing error and exiting when
switch(nctype) statement receives an illegal default case
NCO emits warnings when compiled by GCC with -DNETCDF2_ONLY since,
@@ -546,16 +549,33 @@ nco_dfl_case_nc_type_err(void) /* [fnc] Print error and exit for illegal switch(
so I have implemented a uniform error function, nco_dfl_case_nc_type_err(),
to be called by all routines which emit errors only when compiled with
NETCDF2_ONLY.
- This makes the behavior easy to modify or remove in the future.
-
- Placing this in its own routine also has the virtue of saving many lines
- of code since this function is used in many many switch() statements. */
+ This makes the behavior easy to modify or remove in the future. */
const char fnc_nm[]="nco_dfl_case_nc_type_err()";
(void)fprintf(stdout,"%s: ERROR switch(nctype) statement fell through to default case, which is illegal, because each type should have a well-defined action. This error may be triggered by using an NCO built with only netCDF3 functionality to examine a netCDF4 dataset that contains a new atomic type (e.g., NC_INT64).\nHINT: Configure/build NCO with --enable-netCDF4. Exiting...\n",fnc_nm);
nco_err_exit(0,fnc_nm);
} /* end nco_dfl_case_nc_type_err() */
void
+nco_dfl_case_generic_err(void) /* [fnc] Print error and exit for illegal switch case */
+{
+ /* Purpose: Print error and exit when switch statement reaches illegal default case
+ Routine reduces bloat because many switch() statements invoke this functionality */
+ const char fnc_nm[]="nco_dfl_case_generic_err()";
+ (void)fprintf(stdout,"%s: ERROR switch statement fell through to default case, which is unsafe. This generic error handler ensures all switch statements are fully enumerated. Exiting...\n",fnc_nm);
+ nco_err_exit(0,fnc_nm);
+} /* end nco_dfl_case_generic_err() */
+
+void
+nco_dfl_case_prg_id_err(void) /* [fnc] Print error and exit for illegal switch(nco_prg_id_id) case */
+{
+ /* Purpose: Print error and exit when switch statement reaches illegal default case
+ Routine reduces bloat because many switch() statements invoke this functionality */
+ const char fnc_nm[]="nco_dfl_case_prg_id_err()";
+ (void)fprintf(stdout,"%s: ERROR switch(nco_prg_id) statement fell through to default case, which is unsafe. This specific error handler ensures all switch(nco_prg_id) statements are fully enumerated. Exiting...\n",fnc_nm);
+ nco_err_exit(0,fnc_nm);
+} /* end nco_dfl_case_prg_id_err() */
+
+void
nco_sng_cnv_err /* [fnc] Print error and exit for failed strtol()-type calls */
(const char *cnv_sng, /* I [sng] String to convert */
const char *sng_cnv_fnc, /* I [sng] Name of function used to convert string */
@@ -577,19 +597,6 @@ nco_sng_cnv_err /* [fnc] Print error and exit for failed strtol()-type calls */
nco_err_exit(0,fnc_nm);
} /* end nco_sng_cnv_err() */
-void
-nco_dfl_case_prg_id_err(void) /* [fnc] Print error and exit for illegal switch(nco_prg_id_id) case */
-{
- /* Purpose: Convenience routine for printing error and exiting when
- switch(nco_prg_id) statement receives an illegal default case
-
- Placing this in its own routine also has the virtue of saving many lines
- of code since this function is used in many many switch() statements. */
- const char fnc_nm[]="nco_dfl_case_prg_id_err()";
- (void)fprintf(stdout,"%s: ERROR switch(nco_prg_id) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(nco_prg_id) statements are fully enumerated. Exiting...\n",fnc_nm);
- nco_err_exit(0,fnc_nm);
-} /* end nco_dfl_case_prg_id_err() */
-
/* Begin file-level routines */
int
nco_create(const char * const fl_nm,const int cmode,int * const nc_id)
@@ -1385,8 +1392,8 @@ nco_inq_var_deflate
if(fl_fmt == NC_FORMAT_NETCDF4 || fl_fmt == NC_FORMAT_NETCDF4_CLASSIC){
rcd=nc_inq_var_deflate(nc_id,var_id,shuffle,deflate,dfl_lvl);
}else{ /* !netCDF4 */
- if(shuffle) *shuffle=0;
- if(deflate) *deflate=0;
+ if(shuffle) *shuffle=NC_NOSHUFFLE;
+ if(deflate) *deflate=0; /* NB: netCDF uses naked integer rather than token, e.g., NC_NODEFLATE, for this */
if(dfl_lvl) *dfl_lvl=0;
} /* !netCDF4 */
if(rcd != NC_NOERR) nco_err_exit(rcd,"nco_inq_var_deflate()");
@@ -2072,7 +2079,7 @@ int nc_def_var_chunking(const int nc_id,const int var_id,const int srg_typ,size_
# endif /* !NC_HAVE_NEW_CHUNKING_API */
int nc_inq_var_chunking(const int nc_id,const int var_id,int * const srg_typ,size_t *const cnk_sz){*srg_typ=(size_t)NC_CONTIGUOUS;*cnk_sz=(size_t)NULL;return 1;}
int nc_def_var_deflate(const int nc_id,const int var_id,const int shuffle,const int deflate,const int dfl_lvl){return 1;}
-int nc_inq_var_deflate(const int nc_id,const int var_id,int * const shuffle, int * const deflate,int * const dfl_lvl){if(shuffle) *shuffle=0;if(deflate) *deflate=0;if(dfl_lvl) *dfl_lvl=0;return 1;}
+int nc_inq_var_deflate(const int nc_id,const int var_id,int * const shuffle, int * const deflate,int * const dfl_lvl){if(shuffle) *shuffle=NC_NOSHUFFLE;if(deflate) *deflate=0;if(dfl_lvl) *dfl_lvl=0;return 1;}
int nc_inq_var_endian(const int nc_id,const int var_id,int * const ndn_typ){if(ndn_typ) *ndn_typ=0;return 1;}
int nc_def_var_fletcher32(const int nc_id,const int var_id,const int chk_typ){return 1;}
int nc_inq_var_fletcher32(const int nc_id,const int var_id,int * const chk_typ){if(chk_typ) *chk_typ=NC_NOCHECKSUM;return 1;}
diff --git a/src/nco/nco_netcdf.h b/src/nco/nco_netcdf.h
index 843c6e7..0ea7ac6 100644
--- a/src/nco/nco_netcdf.h
+++ b/src/nco/nco_netcdf.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_netcdf.h,v 1.124 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO wrappers for netCDF C library */
@@ -92,6 +92,9 @@
#ifndef NC_NOCHECKSUM
# define NC_NOCHECKSUM 0
#endif
+#ifndef NC_NOSHUFFLE
+# define NC_NOSHUFFLE 0
+#endif
/* Seven compatibility tokens introduced 20131222 in netCDF 4.3.1-rc7 netcdf.h */
#ifndef NC_FORMAT_UNDEFINED
@@ -207,6 +210,9 @@ nco_dfl_case_prg_id_err /* [fnc] Print error and exit for illegal switch(prg_id)
(void);
void
+nco_dfl_case_generic_err(void); /* [fnc] Print error and exit for illegal switch case */
+
+void
nco_sng_cnv_err /* [fnc] Print error and exit for failed strtol()-type calls */
(const char *cnv_sng, /* I [sng] String to convert */
const char *sng_cnv_fnc, /* I [sng] Name of function used to convert string */
diff --git a/src/nco/nco_omp.c b/src/nco/nco_omp.c
index fee5fd4..2dd926a 100644
--- a/src/nco/nco_omp.c
+++ b/src/nco/nco_omp.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_omp.c,v 1.72 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: OpenMP utilities */
diff --git a/src/nco/nco_omp.h b/src/nco/nco_omp.h
index bf808b3..d82a992 100644
--- a/src/nco/nco_omp.h
+++ b/src/nco/nco_omp.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_omp.h,v 1.33 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: OpenMP utilities */
diff --git a/src/nco/nco_pck.c b/src/nco/nco_pck.c
index 96639d3..5773ae0 100644
--- a/src/nco/nco_pck.c
+++ b/src/nco/nco_pck.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_pck.c,v 1.103 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO utilities for packing and unpacking variables */
@@ -83,7 +83,7 @@ nco_dfl_case_pck_map_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(pck_map) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_pck_map_err()";
(void)fprintf(stdout,"%s: ERROR switch(pck_map) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(pck_map) statements are fully enumerated. Exiting...\n",fnc_nm);
@@ -96,7 +96,7 @@ nco_dfl_case_pck_plc_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(pck_plc) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_pck_plc_err()";
(void)fprintf(stdout,"%s: ERROR switch(pck_plc) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(pck_plc) statements are fully enumerated. Exiting...\n",fnc_nm);
diff --git a/src/nco/nco_pck.h b/src/nco/nco_pck.h
index b45d46b..ec66b8e 100644
--- a/src/nco/nco_pck.h
+++ b/src/nco/nco_pck.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_pck.h,v 1.54 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Description (definition) of packing/unpacking functions */
diff --git a/src/nco/nco_sld.c b/src/nco/nco_ppc.c
similarity index 69%
copy from src/nco/nco_sld.c
copy to src/nco/nco_ppc.c
index ce93e75..d234698 100644
--- a/src/nco/nco_sld.c
+++ b/src/nco/nco_ppc.c
@@ -1,6 +1,6 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sld.c,v 1.26 2015/02/16 23:33:51 zender Exp $ */
+/* $Header$ */
-/* Purpose: NCO utilities for Swath-Like Data (SLD) */
+/* Purpose: NCO utilities for Precision-Preserving Compression (PPC) */
/* Copyright (C) 2015--2015 Charlie Zender
This file is part of NCO, the netCDF Operators. NCO is free software.
@@ -10,43 +10,15 @@
/* Usage:
ncks -4 -O -C -v ppc_dbl --ppc /ppc_dbl=3 ~/nco/data/in.nc ~/foo.nc */
-#include "nco_sld.h" /* Swath-Like Data */
-
-kvmap_sct nco_sng2map /* [fnc] parsing string to key-value pair */
-(char *sng, /* I [sng] string to parse with a = */
- kvmap_sct kvm) /* O [sct] key-value pair */
-{
- char *prt;
-
- int icnt=0;
-
- prt=strtok(sng,"=");
- while(prt){
- icnt++;
- nco_sng_strip(prt);
- switch(icnt){
- case 1:
- kvm.key=strdup(prt);
- break;
- case 2:
- kvm.value=strdup(prt);
- break;
- default:
- (void)fprintf(stderr,"Cannot get key-value pair from this input: %s\n",sng);
- break;
- }/* end switch */
- prt=strtok(NULL,"=");
- }/* end while */
- return kvm;
-} /* end nco_sng2map() */
+#include "nco_ppc.h" /* Precision-Preserving Compression */
void
nco_ppc_att_prc /* [fnc] Create PPC attribute */
(const int nc_id, /* I [id] Input netCDF file ID */
const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
{
- /* NB: Can fail when output file has fewer variables than input file (i.e., was subsetted)
- 20150126: functionality moved to nco_xtr_dfn() */
+ /* NB: Can fail when output file has fewer variables than input file (e.g., file was subsetted)
+ 20150126: Deprecated, debugged and functionality moved to nco_xtr_dfn() */
aed_sct aed;
char att_nm_dsd[]="least_significant_digit";
char att_nm_nsd[]="number_of_significant_digits";
@@ -70,7 +42,7 @@ nco_ppc_att_prc /* [fnc] Create PPC attribute */
aed.id=var_id;
aed.val=att_val;
if(var_trv.flg_nsd) aed.att_nm=att_nm_nsd; else aed.att_nm=att_nm_dsd;
- aed.type=NC_INT; /* NB: value changes if it is assigned outside for loop */
+ aed.type=NC_INT; /* NB: Buggy: value changes if it is assigned outside for loop */
aed.sz=1L;
aed.mode=aed_create;
rcd=nco_inq_att_flg(nc_id,var_id,aed.att_nm,&att_typ,&att_sz);
@@ -89,13 +61,14 @@ nco_ppc_ini /* Set PPC based on user specifications */
int *dfl_lvl, /* O [enm] Deflate level */
const int fl_out_fmt, /* I [enm] Output file format */
char * const ppc_arg[], /* I [sng] List of user-specified PPC */
- const int ppc_nbr, /* I [nbr] Number of PPC specified */
+ const int ppc_arg_nbr, /* I [nbr] Number of PPC specified */
trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
{
- int idx;
- int ippc=0;
- kvmap_sct *ppc_lst; /* [sct] PPC container */
- kvmap_sct kvm;
+ int ppc_arg_idx; /* [idx] Index over ppr_arg (i.e., separate invocations of "--ppc var1[,var2]=val") */
+ int ppc_var_idx; /* [idx] Index over ppr_lst (i.e., all names explicitly specified in all "--ppc var1[,var2]=val" options) */
+ int ppc_var_nbr=0;
+ kvm_sct *ppc_lst; /* [sct] PPC container */
+ kvm_sct kvm;
if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC){
/* If user did not explicitly set deflate level for this file ... */
@@ -107,40 +80,44 @@ nco_ppc_ini /* Set PPC based on user specifications */
if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"%s: INFO Requested Precision-Preserving Compression (PPC) on netCDF3 output dataset. Unlike netCDF4, netCDF3 does not support internal compression. To take full advantage of PPC consider writing file as netCDF4 enhanced (e.g., %s -4 ...) or classic (e.g., %s -7 ...). Or consider compressing the netCDF3 file afterwards with, e.g., gzip or bzip2. File must then be uncompressed with, e.g., gunzip or bunzip2 before netCDF readers [...]
} /* endelse */
- ppc_lst=(kvmap_sct *)nco_malloc(NC_MAX_VARS*sizeof(kvmap_sct));
+ ppc_lst=(kvm_sct *)nco_malloc(NC_MAX_VARS*sizeof(kvm_sct));
/* Parse PPCs */
- for(idx=0;idx<ppc_nbr;idx++){
- if(!strstr(ppc_arg[idx],"=")){
- (void)fprintf(stdout,"%s: Invalid --ppc specification: %s\n",nco_prg_nm_get(),ppc_arg[idx]);
- if(ppc_lst) nco_kvmaps_free(ppc_lst);
+ for(ppc_arg_idx=0;ppc_arg_idx<ppc_arg_nbr;ppc_arg_idx++){
+ if(!strstr(ppc_arg[ppc_arg_idx],"=")){
+ (void)fprintf(stdout,"%s: Invalid --ppc specification: %s. Must contain \"=\" sign.\n",nco_prg_nm_get(),ppc_arg[ppc_arg_idx]);
+ if(ppc_lst) nco_kvm_free(ppc_lst);
nco_exit(EXIT_FAILURE);
} /* endif */
- kvm=nco_sng2map(ppc_arg[idx],kvm);
+ kvm=nco_sng2kvm(ppc_arg[ppc_arg_idx],kvm);
+ /* nco_sng2kvm() converts argument "--ppc one,two=3" into kvm.key="one,two" and kvm.val=3
+ Then nco_lst_prs_2D() converts kvm.key into two items, "one" and "two", with the same value, 3 */
if(kvm.key){
- char *items[BUFSIZ];
- int idxi;
- int item_nbr=nco_sng2array(",",kvm.key,items); /* multi-var specification */
- for(idxi=0;idxi<item_nbr;idxi++){ /* expand multi-var specification */
- ppc_lst[ippc].key=strdup(items[idxi]);
- ppc_lst[ippc].value=strdup(kvm.value);
- ippc++;
+ int var_idx; /* [idx] Index over variables in current PPC argument */
+ int var_nbr; /* [nbr] Number of variables in current PPC argument */
+ char **var_lst;
+ var_lst=nco_lst_prs_2D(kvm.key,",",&var_nbr);
+ for(var_idx=0;var_idx<var_nbr;var_idx++){ /* Expand multi-variable specification */
+ ppc_lst[ppc_var_nbr].key=strdup(var_lst[var_idx]);
+ ppc_lst[ppc_var_nbr].val=strdup(kvm.val);
+ ppc_var_nbr++;
} /* end for */
+ var_lst=nco_sng_lst_free(var_lst,var_nbr);
} /* end if */
} /* end for */
/* PPC default exists, set all non-coordinate variables to default first */
- for(idx=0;idx<ippc;idx++){
- if(!strcasecmp(ppc_lst[idx].key,"default")){
- nco_ppc_set_dflt(nc_id,ppc_lst[idx].value,trv_tbl);
- break; /* only one default is needed */
+ for(ppc_var_idx=0;ppc_var_idx<ppc_var_nbr;ppc_var_idx++){
+ if(!strcasecmp(ppc_lst[ppc_var_idx].key,"default")){
+ nco_ppc_set_dflt(nc_id,ppc_lst[ppc_var_idx].val,trv_tbl);
+ break; /* Only one default is needed */
} /* endif */
} /* end for */
/* Set explicit, non-default PPCs that can overwrite default */
- for(idx=0;idx<ippc;idx++){
- if(!strcasecmp(ppc_lst[idx].key,"default")) continue;
- nco_ppc_set_var(ppc_lst[idx].key,ppc_lst[idx].value,trv_tbl);
+ for(ppc_var_idx=0;ppc_var_idx<ppc_var_nbr;ppc_var_idx++){
+ if(!strcasecmp(ppc_lst[ppc_var_idx].key,"default")) continue;
+ nco_ppc_set_var(ppc_lst[ppc_var_idx].key,ppc_lst[ppc_var_idx].val,trv_tbl);
} /* end for */
/* Unset PPC and flag for all variables with excessive PPC
@@ -218,7 +195,7 @@ nco_ppc_ini /* Set PPC based on user specifications */
} /* endif */
} /* endfor */
- if(ppc_lst) nco_kvmaps_free(ppc_lst);
+ if(ppc_lst) nco_kvm_free(ppc_lst);
} /* end nco_ppc_ini() */
void
@@ -227,19 +204,19 @@ nco_ppc_set_dflt /* Set PPC value for all non-coordinate variables for --ppc def
const char * const ppc_arg, /* I [sng] User input for precision-preserving compression */
trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
{
- int ppc;
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
+ int ppc_val;
nco_bool flg_nsd=True; /* [flg] PPC is NSD */
if(ppc_arg[0] == '.'){
flg_nsd=False; /* DSD */
- ppc=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
+ ppc_val=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg+1L,"strtol",sng_cnv_rcd);
}else{ /* NSD */
- ppc=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
+ ppc_val=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg,"strtol",sng_cnv_rcd);
- if(ppc <= 0){
- (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Default is specified as %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),ppc);
+ if(ppc_val <= 0){
+ (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Default is specified as %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),ppc_val);
nco_exit(EXIT_FAILURE);
} /* endif */
} /* end if */
@@ -253,8 +230,8 @@ nco_ppc_set_dflt /* Set PPC value for all non-coordinate variables for --ppc def
int var_id;
nco_inq_grp_full_ncid(nc_id,trv_tbl->lst[idx_tbl].grp_nm_fll,&grp_id);
nco_inq_varid(grp_id,trv_tbl->lst[idx_tbl].nm,&var_id);
- if(!nco_is_spc_in_bnd_att(grp_id,var_id) && !nco_is_spc_in_crd_att(grp_id,var_id)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
+ if(!nco_is_spc_in_bnd_att(grp_id,var_id) && !nco_is_spc_in_clm_att(grp_id,var_id) && !nco_is_spc_in_crd_att(grp_id,var_id)){
+ trv_tbl->lst[idx_tbl].ppc=ppc_val;
trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
} /* endif */
} /* endif */
@@ -269,20 +246,20 @@ nco_ppc_set_var
trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
{
const char sls_chr='/'; /* [chr] Slash character */
- int mch_nbr=0;
- int ppc;
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
+ int mch_nbr=0;
+ int ppc_val;
nco_bool flg_nsd=True; /* [flg] PPC is NSD */
if(ppc_arg[0] == '.'){ /* DSD */
flg_nsd=False;
- ppc=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
+ ppc_val=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg+1L,"strtol",sng_cnv_rcd);
}else{ /* NSD */
- ppc=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
+ ppc_val=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg,"strtol",sng_cnv_rcd);
- if(ppc <= 0){
- (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Specified value for %s is %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),var_nm,ppc);
+ if(ppc_val <= 0){
+ (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Specified value for %s is %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),var_nm,ppc_val);
nco_exit(EXIT_FAILURE);
} /* endif */
} /* end else */
@@ -295,7 +272,10 @@ nco_ppc_set_var
rx=(regex_t *)nco_malloc(sizeof(regex_t));
if(strchr(var_nm,sls_chr)){ /* Full name is used */
/* Important difference between full- and short-name matching: Prepend carat to RX so full name matches must start at beginning of variable name */
- char sng2mch[BUFSIZ]="^";
+ char *sng2mch;
+ sng2mch=(char *)nco_malloc(NC_MAX_VARS*sizeof(char *));
+ sng2mch[0]='\0';
+ strcat(sng2mch,"^");
strcat(sng2mch,var_nm);
if(regcomp(rx,sng2mch,(REG_EXTENDED | REG_NEWLINE))){ /* Compile regular expression */
(void)fprintf(stdout,"%s: ERROR trv_tbl_set_ppc() error in regular expression \"%s\"\n",nco_prg_nm_get(),var_nm);
@@ -306,12 +286,13 @@ nco_ppc_set_var
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
if(!regexec(rx,trv_tbl->lst[idx_tbl].nm_fll,rx_prn_sub_xpr_nbr,result,0)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
+ trv_tbl->lst[idx_tbl].ppc=ppc_val;
trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
mch_nbr++;
} /* endif */
} /* endif */
} /* endfor */
+ sng2mch=(char *)nco_free(sng2mch);
}else{ /* Relative name is used */
if(regcomp(rx,var_nm,(REG_EXTENDED | REG_NEWLINE))){ /* Compile regular expression */
(void)fprintf(stdout,"%s: ERROR trv_tbl_set_ppc() error in regular expression \"%s\"\n",nco_prg_nm_get(),var_nm);
@@ -322,7 +303,7 @@ nco_ppc_set_var
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
if(!regexec(rx,trv_tbl->lst[idx_tbl].nm,rx_prn_sub_xpr_nbr,result,0)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
+ trv_tbl->lst[idx_tbl].ppc=ppc_val;
trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
mch_nbr++;
} /* endif */
@@ -340,7 +321,7 @@ nco_ppc_set_var
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
if(!strcmp(var_nm,trv_tbl->lst[idx_tbl].nm_fll)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
+ trv_tbl->lst[idx_tbl].ppc=ppc_val;
trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
mch_nbr++;
break; /* Only one match with full name */
@@ -351,7 +332,7 @@ nco_ppc_set_var
for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
if(!strcmp(var_nm,trv_tbl->lst[idx_tbl].nm)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
+ trv_tbl->lst[idx_tbl].ppc=ppc_val;
trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
mch_nbr++;
} /* endif */
@@ -366,145 +347,3 @@ nco_ppc_set_var
return;
} /* end nco_ppc_set_var() */
-
-char *
-nco_sng_strip( /* [fnc] Strip leading and trailing white space */
-char *sng)
-{
- /* fxm: seems not working for \n??? */
- char *srt=sng;
- while(isspace(*srt)) srt++;
- int end=strlen(srt);
- if(srt != sng){
- memmove(sng,srt,end);
- sng[end]='\0';
- } /* endif */
- while(isblank(*(sng+end-1))) end--;
- sng[end]='\0';
- return sng;
-}/* end nco_sng_strip */
-
-int nco_sng2array(const char *dlm, const char *str, char **sarray)
-{
- int idx=0;
- char *tstr;
- tstr=strdup(str);
- sarray[idx]=strtok(tstr,dlm);
- while(sarray[idx]) sarray[++idx]=strtok(NULL,dlm);
- return idx;
-} /* end nco_sng2array */
-
-void nco_kvmaps_free(kvmap_sct *kvmaps)
-{
- int idx=0;
- while(kvmaps[idx].key){
- kvmaps[idx].key=(char *)nco_free(kvmaps[idx].key);
- kvmaps[idx].value=(char *)nco_free(kvmaps[idx].value);
- } /* end while */
- kvmaps=(kvmap_sct *)nco_free(kvmaps);
-} /* end nco_kvmaps_free */
-
-void nco_kvmap_prn(kvmap_sct vm)
-{
- if(!vm.key) return;
- (void)fprintf(stdout,"%s=",vm.key);
- (void)fprintf(stdout,"%s\n",vm.value);
-} /* end nco_kvmap_prn */
-
-int
-hdlscrip( /* return 0 invalid SCRIP file or rcd, 1 success */
-char *fl_nm_scrip, /* SCRIP file name with proper path */
-kvmap_sct *kvm_scrip)/* structure to hold contents of SCRIP file */
-{
- char line[BUFSIZ];
-
- int icnt;
- int idx=0;
-
- FILE *fl_scrip;
-
- fl_scrip=fopen(fl_nm_scrip,"r");
-
- if(!fl_scrip){
- fprintf(stderr,"Cannot open SCRIP file %s\n",fl_nm_scrip);
- return NCO_ERR;
- } /* endif */
-
- while(fgets(line,sizeof(line),fl_scrip)){
- if(!strstr(line,"=")){
- fprintf(stderr,"invalid line in SCRIP file: %s\n", line);
- fclose(fl_scrip);
- return NCO_ERR;
- } /* endif */
- kvm_scrip[idx]=nco_sng2map(line,kvm_scrip[idx]);
- if(!kvm_scrip[idx].key){
- fclose(fl_scrip);
- return NCO_ERR;
- }else{
- idx++;
- } /* end else */
- } /* finish parsing SCRIP file */
- fclose(fl_scrip);
-
- for(icnt=0;icnt<idx;icnt++) nco_kvmap_prn(kvm_scrip[icnt]);
-
- return NCO_NOERR;
-} /* end hdlscrip */
-
-#if 0
-int
-nco_ESMF_Regrid(
-wgt,
-data_in,
-&data_out
-){
-// Given weights and data, do regridding
-ESMF_Regrid(wgt,data_in,data_);
-// write data_out
-}
-
-int
-nco_rgr_wgt_grd_mk();
-
-typedef struct{
-char *fl_grd_in;
-char *fl_grd_out;
-flg_1...;
-} rgr_wgt_sct;
-
-int
-nco_rgr_wgt_grd_mk(
-rgr_wgt_sct *rgr_wgt;
-){
-// Given grids, compute weights
-
-// NCO reads and checks inputs
-open(fl_grd_in);
-read lat_in,lon_in,lat_in_crn,... // nco_var_get
-
-// populate rgr_wgt
-
-nco_ESMF_RegridWeightGen(lat_in_crn,lon_in_crn,lat_out_crn,lon_out_crn,&wgt);
-
-// NCO writes output
-write wgt // nco_var_get
-
-}
-
-int
-nco_ESMF_RegridWeightGen(
-lat_in_crn,
-lon_in_crn,
-...
-){
-// Given grids, compute weights
-
-const char fnc_nm[]="nco_ESMF_RegridWeightGen()";
-int rcd=NC_NOERR;
-rcd=ESMF_RegridWeightGen(lat_in_crn,lon_in_crn,lat_out_crn,lon_out_crn,&wgt);
-if(rcd != NC_NOERR) nco_err_exit(rcd,fnc_nm);
-return rcd;
-
-// NCO writes output
-}
-#endif /* endif False */
diff --git a/src/nco/nco_ppc.h b/src/nco/nco_ppc.h
new file mode 100644
index 0000000..5b41fae
--- /dev/null
+++ b/src/nco/nco_ppc.h
@@ -0,0 +1,65 @@
+/* $Header$ */
+
+/* Purpose: Description (definition) of Precision-Preserving Compression (PPC) functions */
+
+/* Copyright (C) 2015--2015 Charlie Zender
+ This file is part of NCO, the netCDF Operators. NCO is free software.
+ You may redistribute and/or modify NCO under the terms of the
+ GNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file */
+
+/* Usage:
+ #include "nco_ppc.h" *//* Precision-Preserving Compression */
+
+#ifndef NCO_PPC_H
+#define NCO_PPC_H
+
+/* Standard header files */
+#include <ctype.h> /* isalnum(), isdigit(), tolower() */
+#include <stdio.h> /* stderr, FILE, NULL, printf */
+#include <stdlib.h> /* atof, atoi, malloc, getopt */
+#include <string.h> /* strcmp() */
+
+/* 3rd party vendors */
+#include <netcdf.h> /* netCDF definitions and C library */
+#include "nco_netcdf.h" /* NCO wrappers for netCDF C library */
+
+/* Personal headers */
+#include "nco.h" /* netCDF Operator (NCO) definitions */
+#include "nco_mmr.h" /* Memory management */
+#include "nco_sng_utl.h" /* String utilities */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+ void
+ nco_ppc_ini /* [fnc] Set PPC based on user specifications */
+ (const int nc_id, /* I [id] netCDF input file ID */
+ int *dfl_lvl, /* O [enm] Deflate level */
+ const int fl_out_fmt, /* I [enm] Output file format */
+ char *const ppc_arg[], /* I [sng] List of user-specified ppc */
+ const int ppc_nbr, /* I [nbr] Number of ppc specified */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
+
+ void
+ nco_ppc_att_prc /* [fnc] create ppc att from trv_tbl */
+ (const int nc_id, /* I [id] Input netCDF file ID */
+ const trv_tbl_sct * const trv_tbl); /* I [sct] GTT (Group Traversal Table) */
+
+ void
+ nco_ppc_set_dflt /* Set the ppc value for all non-coordinate vars */
+ (const int nc_id, /* I [id] netCDF input file ID */
+ const char * const ppc_arg, /* I [sng] user input for precision-preserving compression */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
+
+ void
+ nco_ppc_set_var
+ (const char * const var_nm_fll, /* I [sng] Variable name to find */
+ const char * const ppc_arg, /* I [sng] user input for precision-preserving compression */
+ trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* NCO_PPC_H */
diff --git a/src/nco/nco_prn.c b/src/nco/nco_prn.c
index 847c763..41d80f1 100644
--- a/src/nco/nco_prn.c
+++ b/src/nco/nco_prn.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_prn.c,v 1.233 2015/02/09 03:38:40 zender Exp $ */
+/* $Header$ */
/* Purpose: Print variables, attributes, metadata */
@@ -1221,7 +1221,7 @@ nco_prn_var_dfn /* [fnc] Print variable metadata */
if(prn_flg->new_fmt && !prn_flg->xml) prn_ndn=prn_flg->sxn_fst+prn_flg->var_fst+var_trv->grp_dpt*prn_flg->spc_per_lvl;
if(prn_flg->xml) prn_ndn=prn_flg->sxn_fst+var_trv->grp_dpt*prn_flg->spc_per_lvl;
if(prn_flg->trd){
- if(nco_fmt_xtn_get() != nco_fmt_xtn_hdf4 || NC_LIB_VERSION >= 433) (void)fprintf(stdout,"%*s%s: type %s, %i dimension%s, %i attribute%s, chunked? %s, compressed? %s, packed? %s\n",prn_ndn,spc_sng,var_trv->nm,nco_typ_sng(var_typ),nbr_dim,(nbr_dim == 1) ? "" : "s",nbr_att,(nbr_att == 1) ? "" : "s",(srg_typ == NC_CHUNKED) ? "yes" : "no",(deflate) ? "yes" : "no",(packing) ? "yes" : "no"); else (void)fprintf(stdout,"%*s%s: type %s, %i dimension%s, %i attribute%s, chunked? HDF4_UNKNOWN, co [...]
+ if(nco_fmt_xtn_get() != nco_fmt_xtn_hdf4 || NC_LIB_VERSION >= 433) (void)fprintf(stdout,"%*s%s: type %s, %i dimension%s, %i attribute%s, compressed? %s, chunked? %s, packed? %s\n",prn_ndn,spc_sng,var_trv->nm,nco_typ_sng(var_typ),nbr_dim,(nbr_dim == 1) ? "" : "s",nbr_att,(nbr_att == 1) ? "" : "s",(deflate) ? "yes" : "no",(srg_typ == NC_CHUNKED) ? "yes" : "no",(packing) ? "yes" : "no"); else (void)fprintf(stdout,"%*s%s: type %s, %i dimension%s, %i attribute%s, compressed? HDF4_UNKNOWN, [...]
} /* !trd */
if(prn_flg->xml) (void)fprintf(stdout,"%*s<variable name=\"%s\" type=\"%s\"",prn_ndn,spc_sng,var_trv->nm,xml_typ_nm(var_typ));
@@ -1317,21 +1317,10 @@ nco_prn_var_val_trv /* [fnc] Print variable data (GTT version) */
const trv_sct * const var_trv, /* I [sct] Object to print (variable) */
const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
{
- /* Purpose:
- Get variable with limits from input file
- User supplied dlm_sng, print var (includes nbr_dim == 0)
- Get dimensional units
- if nbr_dim == 0 and dlm_sng == NULL Print variable
- if PRN.. == False Print variable taking account of FORTRAN (need variable indices)
- if PRN_DMN_IDX_CRD_VAL then read in co-ordinate dimensions
- if PRN.. == True Print variable taking account of FORTRAN (Use dimensions to calculate variable indices)
+ /* Purpose: Print variable data
- Similar to nco_msa_prn_var_val() but uses limit information contained in GTT
- Differences are marked "GTT"
- 1) It is not needed to retrieve dimension IDs for variable, these were used in nco_msa_prn_var_val()
- to match limits; Group Traversal Table (GTT) should be "ID free".
- 2) Object to print (variable) is passed as parameter
- 3) MSA: Modulo arrays: Changing subscript of first (least rapidly varying) dimension by one moves most quickly through
+ Descended from nco_prn_var_val_lmt() but uses limit information contained in GTT
+ Modulo arrays: Changing subscript of first (least rapidly varying) dimension by one moves most quickly through
address space. Changing the subscript of the last (most rapidly varying) dimension by one moves exactly one location
(e.g., 8 bytes for a double) in address space. Each dimension has its own "stride" or length of RAM space between
consecutive entries. mod_map_in and mod_map_cnt keep track of these distances. They are mappings between index-based
@@ -1447,7 +1436,7 @@ nco_prn_var_val_trv /* [fnc] Print variable data (GTT version) */
{ /* begin potential OpenMP critical */
(void)nco_get_var1(grp_id,var.id,0L,var.val.vp,var.type);
} /* end potential OpenMP critical */
- } else { /* ! Scalars */
+ }else{ /* ! Scalars */
/* Allocate local MSA */
lmt_msa=(lmt_msa_sct **)nco_malloc(var_trv->nbr_dmn*sizeof(lmt_msa_sct *));
lmt=(lmt_sct **)nco_malloc(var_trv->nbr_dmn*sizeof(lmt_sct *));
@@ -1472,9 +1461,9 @@ nco_prn_var_val_trv /* [fnc] Print variable data (GTT version) */
var.has_mss_val=nco_mss_val_get(var.nc_id,&var);
if(var.has_mss_val) val_sz_byt=nco_typ_lng(var.type);
- /* User-supplied dlm_sng, print variable (includes nbr_dmn == 0) */
if(prn_flg->dlm_sng) dlm_sng=strdup(prn_flg->dlm_sng); /* [sng] User-specified delimiter string, if any */
if(dlm_sng){
+ /* Print variable with user-supplied dlm_sng (includes nbr_dmn == 0) */
char *fmt_sng_mss_val=NULL;
/* Print each element with user-supplied formatting code */
@@ -1482,10 +1471,10 @@ nco_prn_var_val_trv /* [fnc] Print variable data (GTT version) */
(void)sng_ascii_trn(dlm_sng);
/* Assume -s argument (dlm_sng) formats entire string
- Otherwise, one could assume that field will be printed with format nco_typ_fmt_sng(var.type),
- and that user is only allowed to affect text between fields.
- This would be accomplished with:
- (void)sprintf(var_sng,"%s%s",nco_typ_fmt_sng(var.type),dlm_sng);*/
+ Otherwise, one could assume that field will be printed with format nco_typ_fmt_sng(var.type),
+ and that user is only allowed to affect text between fields.
+ This would be accomplished with:
+ (void)sprintf(var_sng,"%s%s",nco_typ_fmt_sng(var.type),dlm_sng);*/
/* Find replacement format string at most once, then re-use */
#ifdef NCO_HAVE_REGEX_FUNCTIONALITY
@@ -2470,7 +2459,7 @@ nco_dfl_case_fmt_xtn_err(void) /* [fnc] Print error and exit for illegal switch(
/* Purpose: Convenience routine for printing error and exiting when
switch(nco_fmt_xtn) statement receives an illegal default case
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const char fnc_nm[]="nco_dfl_case_fmt_xtn_err()";
(void)fprintf(stdout,"%s: ERROR switch(nco_fmt_xtn) statement fell through to default case, which is unsafe. This catch-all error handler ensures all switch(nco_fmt_xtn) statements are fully enumerated. Exiting...\n",fnc_nm);
diff --git a/src/nco/nco_prn.h b/src/nco/nco_prn.h
index b695690..b2e490f 100644
--- a/src/nco/nco_prn.h
+++ b/src/nco/nco_prn.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_prn.h,v 1.54 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Print variables, attributes, metadata */
diff --git a/src/nco/nco_rec_var.c b/src/nco/nco_rec_var.c
index e5bf6ff..db2e36c 100644
--- a/src/nco/nco_rec_var.c
+++ b/src/nco/nco_rec_var.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rec_var.c,v 1.32 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Purpose: Record variable utilities */
diff --git a/src/nco/nco_rec_var.h b/src/nco/nco_rec_var.h
index 010b535..f0ef785 100644
--- a/src/nco/nco_rec_var.h
+++ b/src/nco/nco_rec_var.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rec_var.h,v 1.23 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Record variable utilities */
diff --git a/src/nco/nco_rgr.c b/src/nco/nco_rgr.c
new file mode 100644
index 0000000..f958ceb
--- /dev/null
+++ b/src/nco/nco_rgr.c
@@ -0,0 +1,1256 @@
+/* $Header$ */
+
+/* Purpose: NCO utilities for regridding */
+
+/* Copyright (C) 2015--2015 Charlie Zender
+ This file is part of NCO, the netCDF Operators. NCO is free software.
+ You may redistribute and/or modify NCO under the terms of the
+ GNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file */
+
+#include "nco_rgr.h" /* Regridding */
+
+int /* O [enm] Return code */
+nco_rgr_ctl /* [fnc] Control regridding logic */
+(rgr_sct * const rgr_nfo) /* I/O [sct] Regridding structure */
+{
+ /* Purpose: Control regridding logic */
+ int rcd=NCO_NOERR;
+ const char fnc_nm[]="nco_rgr_ctl()";
+
+ nco_bool flg_smf=False; /* [flg] ESMF regridding */
+ nco_bool flg_tps=False; /* [flg] Tempest regridding */
+ nco_bool flg_map=False; /* [flg] Weight-based regridding */
+
+ /* Main control branching occurs here
+ The branching complexity will increase as more regridding features are added */
+ if(rgr_nfo->flg_map) flg_map=True;
+ if(rgr_nfo->flg_grd_src && rgr_nfo->flg_grd_dst) flg_smf=True;
+ if(rgr_nfo->drc_tps) flg_tps=True;
+ assert(!(flg_smf && flg_map));
+ assert(!(flg_smf && flg_tps));
+ assert(!(flg_map && flg_tps));
+
+ if(flg_map){
+ /* Regrid using external mapping weights */
+ rcd=nco_rgr_map(rgr_nfo);
+ } /* !flg_map */
+
+ if(flg_smf){
+#ifdef ENABLE_ESMF
+ /* Regrid using ESMF library */
+ (void)fprintf(stderr,"%s: %s calling nco_rgr_esmf() to generate and apply regridding map\n",nco_prg_nm_get(),fnc_nm);
+ rcd=nco_rgr_esmf(rgr_nfo);
+ /* Close output and free dynamic memory */
+ (void)nco_fl_out_cls(rgr_nfo->fl_out,rgr_nfo->fl_out_tmp,rgr_nfo->out_id);
+ (void)nco_rgr_free(rgr_nfo);
+#else /* !ENABLE_ESMF */
+ (void)fprintf(stderr,"%s: ERROR %s reports attempt to use ESMF regridding without built-in support. Re-configure with --enable_esmf.\n",nco_prg_nm_get(),fnc_nm);
+ nco_exit(EXIT_FAILURE);
+#endif /* !ENABLE_ESMF */
+} /* !flg_smf */
+
+ if(flg_tps){
+ /* Regrid using Tempest regridding */
+ rcd=nco_rgr_tps(rgr_nfo);
+ } /* !flg_map */
+
+ return rcd;
+} /* end nco_rgr_ctl() */
+
+void
+nco_rgr_free /* [fnc] Deallocate regridding structure */
+(rgr_sct * const rgr_nfo) /* I/O [sct] Regridding structure */
+{
+ /* [fnc] Free all dynamic memory in regridding structure */
+ if(rgr_nfo->fl_grd_src) rgr_nfo->fl_grd_src=(char *)nco_free(rgr_nfo->fl_grd_src);
+ if(rgr_nfo->fl_grd_dst) rgr_nfo->fl_grd_dst=(char *)nco_free(rgr_nfo->fl_grd_dst);
+ if(rgr_nfo->fl_in) rgr_nfo->fl_in=(char *)nco_free(rgr_nfo->fl_in);
+ if(rgr_nfo->fl_out) rgr_nfo->fl_out=(char *)nco_free(rgr_nfo->fl_out);
+ if(rgr_nfo->fl_out_tmp) rgr_nfo->fl_out_tmp=(char *)nco_free(rgr_nfo->fl_out_tmp);
+ if(rgr_nfo->fl_map) rgr_nfo->fl_map=(char *)nco_free(rgr_nfo->fl_map);
+ if(rgr_nfo->var_nm) rgr_nfo->var_nm=(char *)nco_free(rgr_nfo->var_nm);
+
+ /* Tempest */
+ if(rgr_nfo->drc_tps) rgr_nfo->drc_tps=(char *)nco_free(rgr_nfo->drc_tps);
+
+ /* Mapfiles */
+ if(rgr_nfo->drc_tps) rgr_nfo->drc_tps=(char *)nco_free(rgr_nfo->drc_tps);
+
+} /* end nco_rfr_free() */
+
+int /* O [enm] Return code */
+nco_rgr_ini /* [fnc] Initialize regridding structure */
+(const int in_id, /* I [id] Input netCDF file ID */
+ char **rgr_arg, /* [sng] Regridding arguments */
+ const int rgr_nbr, /* [nbr] Number of regridding arguments */
+ char * const rgr_in, /* I [sng] File containing fields to be regridded */
+ char * const rgr_out, /* I [sng] File containing regridded fields */
+ char * const rgr_grd_src, /* I [sng] File containing input grid */
+ char * const rgr_grd_dst, /* I [sng] File containing destination grid */
+ char * const rgr_map, /* I [sng] File containing mapping weights from source to destination grid */
+ char * const rgr_var, /* I [sng] Variable for special regridding treatment */
+ rgr_sct * const rgr_nfo) /* O [sct] Regridding structure */
+{
+ /* Purpose: Initialize regridding structure */
+
+ /* Sample calls:
+ Debugging:
+ ncks -O -D 6 --rgr=Y ${DATA}/rgr/dstmch90_clm.nc ~/foo.nc
+
+ T62->T42 from scratch, minimal arguments:
+ ncks -O -D 6 --rgr=Y ${DATA}/rgr/dstmch90_clm.nc ~/foo.nc
+ T62->T42 from scratch, more arguments:
+ ncks -O -D 6 --rgr=Y --rgr_grd_dst=${DATA}/scrip/grids/remap_grid_T42.nc ${DATA}/rgr/dstmch90_clm.nc ~/foo.nc
+ T62->T42 from scratch, explicit arguments:
+ ncks -O --rgr=Y --rgr_grd_dst=${DATA}/scrip/grids/remap_grid_T42.nc --rgr_out=${DATA}/rgr/rgr_out.nc ${DATA}/rgr/dstmch90_clm.nc ~/foo.nc
+ T42->T42 from scratch:
+ ncks -O --rgr=Y --rgr_grd_src=${DATA}/scrip/grids/remap_grid_T42.nc --rgr_grd_dst=${DATA}/scrip/grids/remap_grid_T42.nc --rgr_out=${DATA}/rgr/rgr_out.nc ${DATA}/rgr/essgcm14_clm.nc ~/foo.nc
+ T42->POP43 from existing weights:
+ ncks -O --rgr=Y --rgr_grd_src=${DATA}/scrip/grids/remap_grid_T42.nc --rgr_grd_dst=${DATA}/scrip/grids/remap_grid_POP43.nc --rgr_map=${DATA}/scrip/rmp_T42_to_POP43_conserv.nc --rgr_out=${DATA}/rgr/rgr_out.nc ${DATA}/rgr/essgcm14_clm.nc ~/foo.nc */
+
+ const char fnc_nm[]="nco_rgr_ini()";
+
+ int rcd=NCO_NOERR;
+
+ /* Initialize */
+ rgr_nfo->flg_usr_rqs=False; /* [flg] User requested regridding */
+ rgr_nfo->out_id=int_CEWI; /* [id] Output netCDF file ID */
+
+ rgr_nfo->in_id=in_id; /* [id] Input netCDF file ID */
+ rgr_nfo->rgr_arg=rgr_arg; /* [sng] Regridding arguments */
+ rgr_nfo->rgr_nbr=rgr_nbr; /* [nbr] Number of regridding arguments */
+
+ rgr_nfo->flg_grd_src= rgr_grd_src ? True : False; /* [flg] User-specified input grid */
+ rgr_nfo->fl_grd_src=rgr_grd_src; /* [sng] File containing input grid */
+
+ rgr_nfo->flg_grd_dst= rgr_grd_dst ? True : False; /* [flg] User-specified destination grid */
+ rgr_nfo->fl_grd_dst=rgr_grd_dst; /* [sng] File containing destination grid */
+
+ rgr_nfo->fl_in=rgr_in; /* [sng] File containing fields to be regridded */
+ rgr_nfo->fl_out=rgr_out; /* [sng] File containing regridded fields */
+ rgr_nfo->fl_out_tmp=NULL_CEWI; /* [sng] Temporary file containing regridded fields */
+
+ rgr_nfo->flg_map= rgr_map ? True : False; /* [flg] User-specified mapping weights */
+ rgr_nfo->fl_map=rgr_map; /* [sng] File containing mapping weights from source to destination grid */
+
+ rgr_nfo->var_nm=rgr_var; /* [sng] Variable for special regridding treatment */
+
+ /* Did user explicitly request regridding? */
+ if(rgr_nbr > 0 || rgr_grd_src != NULL || rgr_grd_dst != NULL || rgr_out != NULL || rgr_map != NULL) rgr_nfo->flg_usr_rqs=True;
+
+ /* Initialize arguments after copying */
+ if(!rgr_nfo->fl_out) rgr_nfo->fl_out=(char *)strdup("/data/zender/rgr/rgr_out.nc");
+ if(!rgr_nfo->fl_grd_dst) rgr_nfo->fl_grd_dst=(char *)strdup("/data/zender/scrip/grids/remap_grid_T42.nc");
+ if(!rgr_nfo->var_nm) rgr_nfo->var_nm=(char *)strdup("ORO");
+
+ if(nco_dbg_lvl_get() >= nco_dbg_crr){
+ (void)fprintf(stderr,"%s: INFO %s reports ",nco_prg_nm_get(),fnc_nm);
+ (void)fprintf(stderr,"flg_usr_rqs = %d, ",rgr_nfo->flg_usr_rqs);
+ (void)fprintf(stderr,"rgr_nbr = %d, ",rgr_nfo->rgr_nbr);
+ (void)fprintf(stderr,"fl_grd_src = %s, ",rgr_nfo->fl_grd_src ? rgr_nfo->fl_grd_src : "NULL");
+ (void)fprintf(stderr,"fl_grd_dst = %s, ",rgr_nfo->fl_grd_dst ? rgr_nfo->fl_grd_dst : "NULL");
+ (void)fprintf(stderr,"fl_in = %s, ",rgr_nfo->fl_in ? rgr_nfo->fl_in : "NULL");
+ (void)fprintf(stderr,"fl_out = %s, ",rgr_nfo->fl_out ? rgr_nfo->fl_out : "NULL");
+ (void)fprintf(stderr,"fl_out_tmp = %s, ",rgr_nfo->fl_out_tmp ? rgr_nfo->fl_out_tmp : "NULL");
+ (void)fprintf(stderr,"fl_map = %s, ",rgr_nfo->fl_map ? rgr_nfo->fl_map : "NULL");
+ (void)fprintf(stderr,"\n");
+ } /* endif dbg */
+
+ return rcd;
+} /* end nco_rgr_ini() */
+
+int /* O [enm] Return code */
+nco_rgr_map /* [fnc] Regrid using external weights */
+(rgr_sct * const rgr_nfo) /* I/O [sct] Regridding structure */
+{
+ /* Purpose: Regrid fields using external weights (i.e., a mapping file)
+
+ Examine SCRIP remap file:
+ ncks --cdl -m ${DATA}/scrip/rmp_T42_to_POP43_conserv.nc | m
+
+ Test SCRIP remapping file:
+ ncks -D 6 -O --rgr=Y --rgr_map=${DATA}/scrip/rmp_T42_to_POP43_conserv.nc ${DATA}/rgr/essgcm14_clm.nc ~/foo.nc
+ Test ESMF remapping file:
+ ncks -D 6 -O --rgr=Y --rgr_map=${DATA}/rgr/map_ne120np4_to_181x360_aave.nc ${DATA}/rgr/essgcm14_clm.nc ~/foo.nc
+
+ Conventions:
+ grid_size: Number of grid cells (product of lat*lon)
+ address: Source and destination index for each link pair
+ num_links: Number of unique address pairs in remapping, i.e., size of sparse matrix
+ num_wgts: Number of weights per vertice for given remapping
+ = 1 Bilinear
+ Destination grid value determined by weights times known source grid values
+ at vertices of source quadrilateral that bounds destination point P
+ One weight per vertice guarantees fxm but is not conservative
+ Bilinear requires logically rectangular grid
+ = 1 Distance-based:
+ Distance-weighted uses values at num_neighbors points
+ The weight is inversely proportional to the angular distance from
+ the destination point to each neighbor on the source grid
+ = 3 Second-order conservative:
+ Described in Jones, P. W. (1999), Monthly Weather Review, 127, 2204-2210
+ First-order conservative schemes assume fluxes are constant within gridcell
+ Destination fluxes are simple summations of sources fluxes weighted by overlap areas
+ Old clm and bds remappers use a first-order algorithm
+ Second-order improves this by using a first-order Taylor expansion of flux
+ Source flux is centroid value plus directional offset determined by dot product
+ of directional gradient and vector pointing from vertice to centroid.
+ Three weights per vertice are centroid weight, weight times local theta-gradient from
+ centroid to vertice, and weight times local phi-gradient from centroid to vertice.
+ = 4 Bicubic:
+ The four weights are gradients in each direction plus a cross-gradient term
+ Same principle as bilinear, but more weights per vertice
+ Bicubic requires logically rectangular grid
+
+ wgt:
+ Maximum number of source cells contributing to destination cell is not a dimension
+ in SCRIP remapping files because SCRIP stores everying in 1-D sparse matrix arrays
+ Sparse matrix formulations:
+
+ for(lnk_idx=0;lnk_idx<lnk_nbr;lnk_idx++)
+ // Normalization: fractional area
+ dst[ddr_dst[lnk_idx]]+=src[ddr_src[lnk_idx]]*remap_matrix[lnk_idx,0];
+ // Normalization: destination area
+ dst[ddr_dst[lnk_idx]]+=src[ddr_src[lnk_idx]]*remap_matrix[lnk_idx,0]/dst_area[ddr_dst[lnk_idx]];
+ // Normalization: none
+ dst[ddr_dst[lnk_idx]]+=src[ddr_src[lnk_idx]]*remap_matrix[lnk_idx,0]/(dst_area[ddr_dst[lnk_idx]]*dst_frc[ddr_dst[lnk_idx]);
+ */
+
+ const char fnc_nm[]="nco_rgr_map()"; /* [sng] Function name */
+
+ char *fl_in=rgr_nfo->fl_map;
+ char *fl_pth_lcl=NULL;
+
+ int in_id;
+ int md_open; /* [enm] Mode flag for nc_open() call */
+ int rcd=NC_NOERR;
+
+ int src_grid_size_id; /* [id] Source grid size dimension ID */
+ int dst_grid_size_id; /* [id] Destination grid size dimension ID */
+ int src_grid_corners_id; /* [id] Source grid corners dimension ID */
+ int dst_grid_corners_id; /* [id] Destination grid corners dimension ID */
+ int src_grid_rank_id; /* [id] Source grid rank dimension ID */
+ int dst_grid_rank_id; /* [id] Destination grid rank dimension ID */
+ int num_links_id; /* [id] Number of links dimension ID */
+ int num_wgts_id; /* [id] Number of weights dimension ID */
+
+ nco_bool FL_RTR_RMT_LCN;
+ nco_bool RAM_OPEN=False; /* [flg] Open (netCDF3-only) file(s) in RAM */
+ nco_bool RM_RMT_FL_PST_PRC=True; /* Option R */
+
+ nco_map_sct rgr_map;
+
+ size_t bfr_sz_hnt=NC_SIZEHINT_DEFAULT; /* [B] Buffer size hint */
+ size_t lnk_nbr; /* [nbr] Number of links */
+ size_t lnk_idx;
+
+ if(nco_dbg_lvl_get() >= nco_dbg_crr) (void)fprintf(stderr,"%s: INFO %s obtaining mapping weights from %s\n",nco_prg_nm_get(),fnc_nm,rgr_nfo->fl_map);
+
+ var_sct *wgt=NULL;
+ var_sct *wgt_out=NULL;
+
+ /* Make sure file is on local system and is readable or die trying */
+ fl_in=nco_fl_mk_lcl(fl_in,fl_pth_lcl,&FL_RTR_RMT_LCN);
+ /* Open file using appropriate buffer size hints and verbosity */
+ if(RAM_OPEN) md_open=NC_NOWRITE|NC_DISKLESS; else md_open=NC_NOWRITE;
+ rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
+
+ /* Identify mapping file type.
+ Generated by SCRIP: conventions = "SCRIP"
+ Generated by ESMF_Regridder: conventions = "NCAR-CSM" */
+ char *att_val;
+ char *cnv_sng=NULL_CEWI;
+ /* netCDF standard is uppercase Conventions, though some models user lowercase */
+ char cnv_sng_UC[]="Conventions"; /* Unidata standard string (uppercase) */
+ char cnv_sng_LC[]="conventions"; /* Unidata non-standard string (lowercase) */
+
+ long att_sz;
+
+ nc_type att_typ;
+
+ nco_rgr_mpf_typ_enm nco_rgr_mpf_typ=nco_rgr_mpf_nil; /* [enm] Type of remapping file */
+
+ /* Look for map-type signature in Conventions attribute */
+ cnv_sng=cnv_sng_UC;
+ rcd=nco_inq_att_flg(in_id,NC_GLOBAL,cnv_sng,&att_typ,&att_sz);
+ if(rcd != NC_NOERR){
+ /* Re-try with lowercase string because some models, e.g., CLM, user lowercase "conventions" */
+ cnv_sng=cnv_sng_LC;
+ rcd=nco_inq_att_flg(in_id,NC_GLOBAL,cnv_sng,&att_typ,&att_sz);
+ } /* endif lowercase */
+
+ if(rcd == NC_NOERR && att_typ == NC_CHAR){
+ /* Add one for NUL byte */
+ att_val=(char *)nco_malloc(att_sz*nco_typ_lng(att_typ)+1L);
+ rcd+=nco_get_att(in_id,NC_GLOBAL,cnv_sng,att_val,att_typ);
+ /* NUL-terminate convention attribute before using strcmp() */
+ att_val[att_sz]='\0';
+ /* ESMF conventions */
+ if(strstr(att_val,"NCAR-CSM")) nco_rgr_mpf_typ=nco_rgr_mpf_ESMF;
+ if(strstr(att_val,"SCRIP")) nco_rgr_mpf_typ=nco_rgr_mpf_SCRIP;
+ if(nco_rgr_mpf_typ == nco_rgr_mpf_nil) (void)fprintf(stderr,"%s: ERROR %s unrecognized map type specified in attribute Conventions = %s\n",nco_prg_nm_get(),fnc_nm,att_val);
+ if(att_val) att_val=(char *)nco_free(att_val);
+ } /* end rcd && att_typ */
+
+ switch(nco_rgr_mpf_typ){
+ case nco_rgr_mpf_SCRIP:
+ rcd+=nco_inq_dimid(in_id,"src_grid_size",&src_grid_size_id);
+ rcd+=nco_inq_dimid(in_id,"dst_grid_size",&dst_grid_size_id);
+ rcd+=nco_inq_dimid(in_id,"src_grid_corners",&src_grid_corners_id);
+ rcd+=nco_inq_dimid(in_id,"dst_grid_corners",&dst_grid_corners_id);
+ rcd+=nco_inq_dimid(in_id,"src_grid_rank",&src_grid_rank_id);
+ rcd+=nco_inq_dimid(in_id,"dst_grid_rank",&dst_grid_rank_id);
+ rcd+=nco_inq_dimid(in_id,"num_links",&num_links_id);
+ rcd+=nco_inq_dimid(in_id,"num_wgts",&num_wgts_id);
+ break;
+ case nco_rgr_mpf_ESMF:
+ rcd+=nco_inq_dimid(in_id,"n_a",&src_grid_size_id);
+ rcd+=nco_inq_dimid(in_id,"n_b",&dst_grid_size_id);
+ rcd+=nco_inq_dimid(in_id,"nv_a",&src_grid_corners_id);
+ rcd+=nco_inq_dimid(in_id,"nv_b",&dst_grid_corners_id);
+ rcd+=nco_inq_dimid(in_id,"src_grid_rank",&src_grid_rank_id);
+ rcd+=nco_inq_dimid(in_id,"dst_grid_rank",&dst_grid_rank_id);
+ rcd+=nco_inq_dimid(in_id,"n_s",&num_links_id);
+ rcd+=nco_inq_dimid(in_id,"num_wgts",&num_wgts_id);
+ break;
+ default:
+ (void)fprintf(stderr,"%s: ERROR %s unknown map file type\n",nco_prg_nm_get(),fnc_nm);
+ nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Now we have dimension IDs, get dimension sizes */
+ rcd+=nco_inq_dimlen(in_id,src_grid_size_id,&rgr_map.src_grid_size);
+ rcd+=nco_inq_dimlen(in_id,dst_grid_size_id,&rgr_map.dst_grid_size);
+ rcd+=nco_inq_dimlen(in_id,src_grid_corners_id,&rgr_map.src_grid_corners);
+ rcd+=nco_inq_dimlen(in_id,dst_grid_corners_id,&rgr_map.dst_grid_corners);
+ rcd+=nco_inq_dimlen(in_id,src_grid_rank_id,&rgr_map.src_grid_rank);
+ rcd+=nco_inq_dimlen(in_id,dst_grid_rank_id,&rgr_map.dst_grid_rank);
+ rcd+=nco_inq_dimlen(in_id,num_links_id,&rgr_map.num_links);
+ rcd+=nco_inq_dimlen(in_id,num_wgts_id,&rgr_map.num_wgts);
+
+ cnv_sng=strdup("normalization");
+ nco_rgr_nrm_typ_enm nco_rgr_nrm_typ=nco_rgr_nrm_nil;
+ rcd=nco_inq_att_flg(in_id,NC_GLOBAL,cnv_sng,&att_typ,&att_sz);
+ if(rcd == NC_NOERR && att_typ == NC_CHAR){
+ /* Add one for NUL byte */
+ att_val=(char *)nco_malloc(att_sz*nco_typ_lng(att_typ)+1L);
+ rcd+=nco_get_att(in_id,NC_GLOBAL,cnv_sng,att_val,att_typ);
+ } /* endif */
+ /* NUL-terminate convention attribute before using strcmp() */
+ att_val[att_sz]='\0';
+ if(strstr(att_val,"fracarea")) nco_rgr_nrm_typ=nco_rgr_nrm_fracarea;
+ if(strstr(att_val,"destarea")) nco_rgr_nrm_typ=nco_rgr_nrm_destarea;
+ if(strstr(att_val,"none")) nco_rgr_nrm_typ=nco_rgr_nrm_none;
+ assert(nco_rgr_nrm_typ == nco_rgr_nrm_destarea);
+ if(att_val) att_val=(char *)nco_free(att_val);
+ if(cnv_sng) cnv_sng=(char *)nco_free(cnv_sng);
+
+ cnv_sng=strdup("map_method");
+ nco_rgr_mth_typ_enm nco_rgr_mth_typ=nco_rgr_mth_nil;
+ rcd=nco_inq_att_flg(in_id,NC_GLOBAL,cnv_sng,&att_typ,&att_sz);
+ if(rcd == NC_NOERR && att_typ == NC_CHAR){
+ /* Add one for NUL byte */
+ att_val=(char *)nco_malloc(att_sz*nco_typ_lng(att_typ)+1L);
+ rcd+=nco_get_att(in_id,NC_GLOBAL,cnv_sng,att_val,att_typ);
+ } /* endif */
+ /* NUL-terminate convention attribute before using strcmp() */
+ att_val[att_sz]='\0';
+ if(strstr(att_val,"Conservative remapping")) nco_rgr_mth_typ=nco_rgr_mth_conservative;
+ if(strstr(att_val,"Bilinear remapping")) nco_rgr_mth_typ=nco_rgr_mth_bilinear;
+ if(strstr(att_val,"none")) nco_rgr_mth_typ=nco_rgr_mth_none;
+ assert(nco_rgr_mth_typ != nco_rgr_mth_nil);
+ if(att_val) att_val=(char *)nco_free(att_val);
+ if(cnv_sng) cnv_sng=(char *)nco_free(cnv_sng);
+
+ if(nco_dbg_lvl_get() >= nco_dbg_crr){
+ (void)fprintf(stderr,"%s: INFO %s reports ",nco_prg_nm_get(),fnc_nm);
+ (void)fprintf(stderr,"map_method = %s, normalization = %s, src_grid_size = %li, dst_grid_size = %li, src_grid_corners = %li, dst_grid_corners = %li, src_grid_rank = %li, dst_grid_rank = %li, num_links = %li, num_wgts = %li\n",nco_rgr_mth_sng(nco_rgr_mth_typ),nco_rgr_nrm_sng(nco_rgr_nrm_typ),rgr_map.src_grid_size,rgr_map.dst_grid_size,rgr_map.src_grid_corners,rgr_map.dst_grid_corners,rgr_map.src_grid_rank,rgr_map.dst_grid_rank,rgr_map.num_links,rgr_map.num_wgts);
+ } /* endif dbg */
+
+ /* Obtain grid values necessary to compute output latitude and longitude coordinates */
+ int dst_grd_ctr_lon_id; /* [id] Destination grid center longitudes variable ID */
+ int dst_grd_ctr_lat_id; /* [id] Destination grid center latitudes variable ID */
+ int dst_grd_crn_lon_id; /* [id] Destination grid corner longitudes variable ID */
+ int dst_grd_crn_lat_id; /* [id] Destination grid corner latitudes variable ID */
+ int dmn_sz_id; /* [id] Destination grid dimension sizes ID */
+ int wgt_raw_out_id; /* [id] Remap matrix variable ID */
+
+ switch(nco_rgr_mpf_typ){
+ /* Obtain fields whose name depends on mapfile type */
+ case nco_rgr_mpf_SCRIP:
+ rcd+=nco_inq_varid(in_id,"dst_grid_center_lon",&dst_grd_ctr_lon_id);
+ rcd+=nco_inq_varid(in_id,"dst_grid_center_lat",&dst_grd_ctr_lat_id);
+ rcd+=nco_inq_varid(in_id,"dst_grid_corner_lon",&dst_grd_crn_lon_id);
+ rcd+=nco_inq_varid(in_id,"dst_grid_corner_lat",&dst_grd_crn_lat_id);
+ rcd+=nco_inq_varid(in_id,"remap_matrix",&wgt_raw_out_id); /* fxm: remap_matrix[num_links,num_wgts] != S[n_s] */
+ break;
+ case nco_rgr_mpf_ESMF:
+ rcd+=nco_inq_varid(in_id,"xc_b",&dst_grd_ctr_lon_id);
+ rcd+=nco_inq_varid(in_id,"yc_b",&dst_grd_ctr_lat_id);
+ rcd+=nco_inq_varid(in_id,"xv_b",&dst_grd_crn_lon_id);
+ rcd+=nco_inq_varid(in_id,"yv_b",&dst_grd_crn_lat_id);
+ rcd+=nco_inq_varid(in_id,"S",&wgt_raw_out_id); /* fxm: remap_matrix[num_links,num_wgts] != S[n_s] */
+ break;
+ default:
+ (void)fprintf(stderr,"%s: ERROR %s unknown map file type\n",nco_prg_nm_get(),fnc_nm);
+ nco_dfl_case_generic_err(); break;
+ } /* end switch */
+ /* Obtain fields whose name is independent of mapfile type */
+ rcd+=nco_inq_varid(in_id,"dst_grid_dims",&dmn_sz_id);
+
+ long dmn_cnt[2];
+ long dmn_srt[2];
+ long dmn_srd[2];
+ long idx; /* [idx] Counting index for unrolled grids */
+ double *lon_ctr_out; /* [dgr] Longitude centers of rectangular destination grid */
+ double *lat_ctr_out; /* [dgr] Latitude centers of rectangular destination grid */
+ double *lon_crn_out; /* [dgr] Longitude corners of rectangular destination grid */
+ double *lat_crn_out; /* [dgr] Latitude corners of rectangular destination grid */
+ double *lon_ntf_out; /* [dgr] Longitude interfaces of rectangular destination grid */
+ double *lat_ntf_out; /* [dgr] Latitude interfaces of rectangular destination grid */
+ double *lon_bnd_out; /* [dgr] Longitude boundaries of rectangular destination grid */
+ double *lat_bnd_out; /* [dgr] Latitude boundaries of rectangular destination grid */
+ double *wgt_raw_out; /* [frc] Remapping weights */
+ int *dmn_sz; /* [nbr] Array of dimension sizes of destination grid */
+ const int lon_psn_dst=0; /* [idx] Ordinal position of longitude size in rectangular destination grid */
+ const int lat_psn_dst=1; /* [idx] Ordinal position of latitude size in rectangular destination grid */
+ const int bnd_rnk=2; /* [nbr] Rank of output coordinate CF boundary variables */
+
+ /* Allocate space to hold dimension metadata for rectangular destination grid */
+ assert(rgr_map.dst_grid_rank == 2);
+ dmn_srt[0]=0L;
+ dmn_cnt[0]=rgr_map.dst_grid_rank;
+ dmn_sz=(int *)nco_malloc(rgr_map.dst_grid_rank*nco_typ_lng((nc_type)NC_INT));
+ rcd=nco_get_vara(in_id,dmn_sz_id,dmn_srt,dmn_cnt,dmn_sz,(nc_type)NC_INT);
+
+ const long lon_nbr_out=dmn_sz[lon_psn_dst]; /* [idx] Number of longitudes in rectangular destination grid */
+ const long lat_nbr_out=dmn_sz[lat_psn_dst]; /* [idx] Number of latitudes in rectangular destination grid */
+
+ /* Allocate space for and obtain coordinates and weights */
+ nc_type crd_typ_out=NC_DOUBLE;
+ lon_ctr_out=(double *)nco_malloc(lon_nbr_out*nco_typ_lng(crd_typ_out));
+ lat_ctr_out=(double *)nco_malloc(lat_nbr_out*nco_typ_lng(crd_typ_out));
+ lon_crn_out=(double *)nco_malloc(rgr_map.dst_grid_corners*lon_nbr_out*nco_typ_lng(crd_typ_out));
+ lat_crn_out=(double *)nco_malloc(rgr_map.dst_grid_corners*lat_nbr_out*nco_typ_lng(crd_typ_out));
+ lon_ntf_out=(double *)nco_malloc((lon_nbr_out+1L)*nco_typ_lng(crd_typ_out));
+ lat_ntf_out=(double *)nco_malloc((lat_nbr_out+1L)*nco_typ_lng(crd_typ_out));
+ lon_bnd_out=(double *)nco_malloc(bnd_rnk*lon_nbr_out*nco_typ_lng(crd_typ_out));
+ lat_bnd_out=(double *)nco_malloc(bnd_rnk*lat_nbr_out*nco_typ_lng(crd_typ_out));
+ wgt_raw_out=(double *)nco_malloc_dbg(rgr_map.num_links*nco_typ_lng(crd_typ_out),"Unable to malloc() value buffer for remapping weights",fnc_nm);
+
+ /* Arrays unroll into all longitudes for first latitude, then second latitude, ...
+ Thus longitudes obtained by reading first block contiguously (unstrided)
+ Latitudes obtained by reading unrolled data with stride of lon_nbr */
+ dmn_srt[0]=0L;
+ dmn_cnt[0]=lon_nbr_out;
+ rcd=nco_get_vara(in_id,dst_grd_ctr_lon_id,dmn_srt,dmn_cnt,lon_ctr_out,crd_typ_out);
+ dmn_srt[0]=0L;
+ dmn_cnt[0]=lat_nbr_out;
+ dmn_srd[0]=lon_nbr_out;
+ rcd=nco_get_vars(in_id,dst_grd_ctr_lat_id,dmn_srt,dmn_cnt,dmn_srd,lat_ctr_out,crd_typ_out);
+ dmn_srt[0]=dmn_srt[1]=0L;
+ dmn_cnt[0]=lon_nbr_out;
+ dmn_cnt[1]=rgr_map.dst_grid_corners;
+ rcd=nco_get_vara(in_id,dst_grd_crn_lon_id,dmn_srt,dmn_cnt,lon_crn_out,crd_typ_out);
+ dmn_srt[0]=0L;
+ dmn_cnt[0]=lat_nbr_out;
+ dmn_cnt[1]=rgr_map.dst_grid_corners;
+ dmn_srd[0]=lon_nbr_out;
+ dmn_srd[1]=1L;
+ rcd=nco_get_vars(in_id,dst_grd_crn_lat_id,dmn_srt,dmn_cnt,dmn_srd,lat_crn_out,crd_typ_out);
+
+ /* Derive interface boundaries from lat and lon grid-center values
+ NB: Procedures to derive interfaces from midpoints on rectangular grids are theoretically possible
+ However, ESMF often outputs interfaces values (e.g., yv_b) for midpoint coordinates (e.g., yc_b)
+ For example, ACME standard map from ne120np4 to 181x360 has yc_b[0] = yv_b[0] = -90.0
+ Hence safer to read boundary interfaces directly from grid corner/vertice arrays in map file */
+
+ /* Derivation of boundaries from correct xc_b, yc_b is:
+ lon_ntf_out[0]=0.5*(lon_ctr_out[0]+lon_ctr_out[lon_nbr_out-1])-180.0;
+ lat_ntf_out[0]=lat_ctr_out[0]-0.5*(lat_ctr_out[1]-lat_ctr_out[0]);
+ for(idx=1;idx<lon_nbr_out;idx++) lon_ntf_out[idx]=0.5*(lon_ctr_out[idx-1]+lon_ctr_out[idx]);
+ for(idx=1;idx<lat_nbr_out;idx++) lat_ntf_out[idx]=0.5*(lat_ctr_out[idx-1]+lat_ctr_out[idx]);
+ lon_ntf_out[lon_nbr_out]=lon_ntf_out[0]+360.0;
+ lat_ntf_out[lat_nbr_out]=lat_ctr_out[lat_nbr_out-1]+0.5*(lat_ctr_out[lat_nbr_out-1]-lat_ctr_out[lat_nbr_out-2]); */
+
+ for(idx=0;idx<lon_nbr_out;idx++) lon_ntf_out[idx]=lon_crn_out[rgr_map.dst_grid_corners*idx];
+ lon_ntf_out[lon_nbr_out]=lon_crn_out[rgr_map.dst_grid_corners*lon_nbr_out-(rgr_map.dst_grid_corners-1L)];
+ for(idx=0;idx<lat_nbr_out;idx++) lat_ntf_out[idx]=lat_crn_out[rgr_map.dst_grid_corners*idx];
+ lat_ntf_out[lat_nbr_out]=lat_crn_out[rgr_map.dst_grid_corners*lat_nbr_out-1L];
+
+ /* Place interfaces into coordinate boundaries */
+ for(idx=0;idx<lon_nbr_out;idx++){
+ lon_bnd_out[idx]=lon_ntf_out[idx];
+ lon_bnd_out[lon_nbr_out+idx]=lon_ntf_out[idx+1];
+ } /* end loop over longitude */
+ for(idx=0;idx<lat_nbr_out;idx++){
+ lat_bnd_out[idx]=lat_ntf_out[idx];
+ lat_bnd_out[lat_nbr_out+idx]=lat_ntf_out[idx+1];
+ } /* end loop over latitude */
+
+ if(nco_dbg_lvl_get() >= nco_dbg_vec){
+ (void)fprintf(stderr,"%s: INFO %s reports destination rectangular latitude grid:\n",nco_prg_nm_get(),fnc_nm);
+ for(idx=0;idx<lon_nbr_out;idx++) (void)fprintf(stderr,"lon[%li] = [%g, %g, %g]\n",idx,lon_bnd_out[idx],lon_ctr_out[idx],lon_bnd_out[lon_nbr_out+idx]);
+ for(idx=0;idx<lat_nbr_out;idx++) (void)fprintf(stderr,"lat[%li] = [%g, %g, %g]\n",idx,lat_bnd_out[idx],lat_ctr_out[idx],lat_bnd_out[lat_nbr_out+idx]);
+ } /* endif dbg */
+
+ /* Obtain weight from map file */
+ dmn_srt[0]=0L;
+ dmn_cnt[0]=rgr_map.num_links;
+ rcd=nco_get_vara(in_id,wgt_raw_out_id,dmn_srt,dmn_cnt,wgt_raw_out,crd_typ_out);
+
+ /* Close input netCDF file */
+ nco_close(in_id);
+
+ /* Remove local copy of file */
+ if(FL_RTR_RMT_LCN && RM_RMT_FL_PST_PRC) (void)nco_fl_rm(fl_in);
+
+ /* Weight variable */
+
+ /* Write variable */
+
+ /* From this point on we parallel ncks logic for writing output files except:
+ All actions take place in sand-boxed routine and output file visible to regridding only
+ We work with a separate traversal table?
+ Once things work with copy of traversal table, we merge back into main logic */
+
+ /* Free memory allocated for grid reading/writing */
+ if(dmn_sz) dmn_sz=(int *)nco_free(dmn_sz);
+ if(lon_ctr_out) lon_ctr_out=(double *)nco_free(lon_ctr_out);
+ if(lat_ctr_out) lat_ctr_out=(double *)nco_free(lat_ctr_out);
+ if(lon_crn_out) lon_crn_out=(double *)nco_free(lon_crn_out);
+ if(lat_crn_out) lat_crn_out=(double *)nco_free(lat_crn_out);
+ if(lon_ntf_out) lon_ntf_out=(double *)nco_free(lon_ntf_out);
+ if(lat_ntf_out) lat_ntf_out=(double *)nco_free(lat_ntf_out);
+ if(lon_bnd_out) lon_bnd_out=(double *)nco_free(lon_bnd_out);
+ if(lat_bnd_out) lat_bnd_out=(double *)nco_free(lat_bnd_out);
+ if(wgt_raw_out) wgt_raw_out=(double *)nco_free(wgt_raw_out);
+
+ return rcd;
+} /* nco_rgr_map() */
+
+int /* O [enm] Return code */
+nco_rgr_tps /* [fnc] Regrid using Tempest library */
+(rgr_sct * const rgr_nfo) /* I/O [sct] Regridding structure */
+{
+ /* Purpose: Regrid fields using external weights (i.e., a mapping file)
+
+ Test Tempest library: fxm no way to activate yet
+ export DATA_TEMPEST='/data/zender/rgr';ncks -O --rgr=Y ${DATA}/rgr/essgcm14_clm.nc ~/foo.nc */
+
+ const char fnc_nm[]="nco_rgr_tps()";
+
+ const int fmt_chr_nbr=6;
+ const char *cmd_rgr_fmt;
+ char *cmd_rgr;
+ char fl_grd_dst[]="/tmp/foo_outRLLMesh.g";
+ char *fl_grd_dst_cdl;
+ int rcd_sys;
+ int lat_nbr_rqs=180;
+ int lon_nbr_rqs=360;
+ nco_rgr_cmd_typ nco_rgr_cmd; /* [enm] Tempest remap command enum */
+
+ char *nvr_DATA_TEMPEST; /* [sng] Directory where Tempest grids, meshes, and weights are stored */
+ nvr_DATA_TEMPEST=getenv("DATA_TEMPEST");
+ rgr_nfo->drc_tps= (nvr_DATA_TEMPEST && strlen(nvr_DATA_TEMPEST) > 0) ? (char *)strdup(nvr_DATA_TEMPEST) : (char *)strdup("/tmp");
+
+ if(nco_dbg_lvl_get() >= nco_dbg_crr){
+ (void)fprintf(stderr,"%s: INFO %s reports\n",nco_prg_nm_get(),fnc_nm);
+ (void)fprintf(stderr,"drc_tps = %s, ",rgr_nfo->drc_tps ? rgr_nfo->drc_tps : "NULL");
+ (void)fprintf(stderr,"\n");
+ } /* endif dbg */
+
+ /* Allow for whitespace characters in fl_grd_dst
+ Assume CDL translation results in acceptable name for shell commands */
+ fl_grd_dst_cdl=nm2sng_fl(fl_grd_dst);
+ //drc_tps=strcat(drc_tps,"/");
+ //drc_tps=strcat(drc_tps,fl_grd_dst);
+
+ /* Construct and execute regridding command */
+ nco_rgr_cmd=nco_rgr_GenerateRLLMesh;
+ cmd_rgr_fmt=nco_tps_cmd_fmt_sng(nco_rgr_cmd);
+ cmd_rgr=(char *)nco_malloc((strlen(cmd_rgr_fmt)+strlen(fl_grd_dst_cdl)-fmt_chr_nbr+1UL)*sizeof(char));
+ if(nco_dbg_lvl_get() >= nco_dbg_fl) (void)fprintf(stderr,"%s: %s reports generating %d by %d RLL mesh in %s...\n",nco_prg_nm_get(),fnc_nm,lat_nbr_rqs,lon_nbr_rqs,fl_grd_dst);
+ (void)sprintf(cmd_rgr,cmd_rgr_fmt,lat_nbr_rqs,lon_nbr_rqs,fl_grd_dst_cdl);
+ rcd_sys=system(cmd_rgr);
+ if(rcd_sys == -1){
+ (void)fprintf(stdout,"%s: ERROR %s is unable to complete regridding command \"%s\"\n",nco_prg_nm_get(),fnc_nm,cmd_rgr);
+ nco_exit(EXIT_FAILURE);
+ } /* end if */
+ if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"done\n");
+
+ /* Clean-up memory */
+ if(fl_grd_dst_cdl) fl_grd_dst_cdl=(char *)nco_free(fl_grd_dst_cdl);
+ if(cmd_rgr) cmd_rgr=(char *)nco_free(cmd_rgr);
+
+ return NCO_NOERR;
+} /* end nco_rgr_tps() */
+
+const char * /* O [sng] String describing regridding method */
+nco_rgr_mth_sng /* [fnc] Convert regridding method enum to string */
+(const nco_rgr_mth_typ_enm nco_rgr_mth_typ) /* I [enm] Regridding method enum */
+{
+ /* Purpose: Convert regridding method enum to string */
+ switch(nco_rgr_mth_typ){
+ case nco_rgr_mth_conservative: return "Conservative remapping";
+ case nco_rgr_mth_bilinear: return "Bilinear remapping";
+ case nco_rgr_mth_none: return "none";
+ default: nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_rgr_mth_sng() */
+
+const char * /* O [sng] String describing regridding normalization */
+nco_rgr_nrm_sng /* [fnc] Convert regridding normalization enum to string */
+(const nco_rgr_nrm_typ_enm nco_rgr_nrm_typ) /* I [enm] Regridding normalization enum */
+{
+ /* Purpose: Convert regridding normalization enum to string */
+ switch(nco_rgr_nrm_typ){
+ case nco_rgr_nrm_fracarea: return "fracarea";
+ case nco_rgr_nrm_destarea: return "destarea";
+ case nco_rgr_nrm_none: return "none";
+ default: nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_rgr_nrm_sng() */
+
+const char * /* O [sng] String containing regridding command and format */
+nco_tps_cmd_fmt_sng /* [fnc] Convert Tempest remap command enum to command string */
+(const nco_rgr_cmd_typ nco_rgr_cmd) /* I [enm] Tempest remap command enum */
+{
+ /* Purpose: Convert Tempest remap command enum to command string and format */
+ switch(nco_rgr_cmd){
+ case nco_rgr_ApplyOfflineMap:
+ return "ApplyOfflineMap";
+ case nco_rgr_CalculateDiffNorms:
+ return "CalculateDiffNorms";
+ case nco_rgr_GenerateCSMesh:
+ return "GenerateCSMesh --res %d --file %s";
+ case nco_rgr_GenerateGLLMetaData:
+ return "GenerateGLLMetaData";
+ case nco_rgr_GenerateICOMesh:
+ return "GenerateICOMesh";
+ case nco_rgr_GenerateLambertConfConicMesh:
+ return "GenerateLambertConfConicMesh";
+ case nco_rgr_GenerateOfflineMap:
+ return "GenerateOfflineMap --in_mesh %s --out_mesh %s --ov_mesh %s --in_data %s --out_data %s";
+ case nco_rgr_GenerateOverlapMesh:
+ return "GenerateOverlapMesh --a %s --b %s --out %s";
+ case nco_rgr_GenerateRLLMesh:
+ return "GenerateRLLMesh --lat %d --lon %d --file %s";
+ case nco_rgr_GenerateTestData:
+ return "GenerateTestData --mesh %s --np %d --test %d --out %s";
+ case nco_rgr_MeshToTxt:
+ return "MeshToTxt";
+ case nco_rgr_AAA_nil:
+ case nco_rgr_ZZZ_last:
+ default: nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_tps_cmd_fmt_sng() */
+
+const char * /* O [sng] String containing regridding command name */
+nco_tps_cmd_sng /* [fnc] Convert Tempest remap command enum to command name */
+(const nco_rgr_cmd_typ nco_rgr_cmd) /* I [enm] Tempest remap command enum */
+{
+ /* Purpose: Convert Tempest remap command enum to command string */
+ switch(nco_rgr_cmd){
+ case nco_rgr_ApplyOfflineMap: return "ApplyOfflineMap";
+ case nco_rgr_CalculateDiffNorms: return "CalculateDiffNorms";
+ case nco_rgr_GenerateCSMesh: return "GenerateCSMesh";
+ case nco_rgr_GenerateGLLMetaData: return "GenerateGLLMetaData";
+ case nco_rgr_GenerateICOMesh: return "GenerateICOMesh";
+ case nco_rgr_GenerateLambertConfConicMesh: return "GenerateLambertConfConicMesh";
+ case nco_rgr_GenerateOfflineMap: return "GenerateOfflineMap";
+ case nco_rgr_GenerateOverlapMesh: return "GenerateOverlapMesh";
+ case nco_rgr_GenerateRLLMesh: return "GenerateRLLMesh";
+ case nco_rgr_GenerateTestData: return "GenerateTestData";
+ case nco_rgr_MeshToTxt: return "MeshToTxt";
+ case nco_rgr_AAA_nil:
+ case nco_rgr_ZZZ_last:
+ default: nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_tps_cmd_sng() */
+
+#ifdef ENABLE_ESMF
+const char * /* O [sng] String version of ESMC_FileFormat_Flag */
+nco_esmf_fl_fmt_sng /* [fnc] Convert ESMF file format to string */
+(const int nco_esmf_fl_fmt) /* I [enm] ESMF file format enum ESMC_FileFormat_Flag */
+{
+ /* Purpose: Convert ESMF fileTypeFlag enum to string */
+ switch(nco_esmf_fl_fmt){
+ case ESMC_FILEFORMAT_UNDEFINED: return "ESMC_FILEFORMAT_UNDEFINED";
+ case ESMC_FILEFORMAT_VTK: return "ESMC_FILEFORMAT_VTK";
+ case ESMC_FILEFORMAT_SCRIP: return "ESMC_FILEFORMAT_SCRIP";
+ case ESMC_FILEFORMAT_ESMFMESH: return "ESMC_FILEFORMAT_ESMFMESH";
+ case ESMC_FILEFORMAT_ESMCGRID: return "ESMC_FILEFORMAT_ESMCGRID";
+ case ESMC_FILEFORMAT_UGRID: return "ESMC_FILEFORMAT_UGRID";
+ case ESMC_FILEFORMAT_GRIDSPEC: return "ESMC_FILEFORMAT_GRIDSPEC";
+ default: nco_dfl_case_generic_err(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_fl_fmt_sng() */
+
+const char * /* O [sng] String version of ESMC_StaggerLoc enum */
+nco_esmf_stg_lcn_sng /* [fnc] Convert ESMF stagger location enum to string */
+(const int nco_esmf_stg_lcn) /* I [enm] ESMF stagger location enum ESMC_StaggerLoc */
+{
+ /* Purpose: Convert ESMF stagger location enum ESMC_StaggerLoc to string */
+ switch(nco_esmf_stg_lcn){
+ case ESMC_STAGGERLOC_INVALID: return "ESMC_STAGGERLOC_INVALID";
+ case ESMC_STAGGERLOC_UNINIT: return "ESMC_STAGGERLOC_UNINIT";
+ case ESMC_STAGGERLOC_CENTER: return "ESMC_STAGGERLOC_CENTER";
+ case ESMC_STAGGERLOC_EDGE1: return "ESMC_STAGGERLOC_EDGE1";
+ case ESMC_STAGGERLOC_EDGE2: return "ESMC_STAGGERLOC_EDGE2";
+ case ESMC_STAGGERLOC_CORNER: return "ESMC_STAGGERLOC_CORNER";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_stg_lcn_sng() */
+
+const char * /* O [sng] String version of ESMC_GridItem_Flag enum */
+nco_esmf_grd_itm_sng /* [fnc] Convert ESMF grid item enum to string */
+(const int nco_esmf_grd_itm) /* I [enm] ESMF grid item enum ESMC_GridItem_Flag */
+{
+ /* Purpose: Convert ESMF grid item enum ESMC_GridItem_Flag to string */
+ switch(nco_esmf_grd_itm){
+ case ESMC_GRIDITEM_INVALID: return "ESMC_GRIDITEM_INVALID";
+ case ESMC_GRIDITEM_UNINIT: return "ESMC_GRIDITEM_UNINIT";
+ case ESMC_GRIDITEM_MASK: return "ESMC_GRIDITEM_MASK";
+ case ESMC_GRIDITEM_AREA: return "ESMC_GRIDITEM_AREA";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_grd_itm_sng() */
+
+const char * /* O [sng] String version of ESMC_CoordSys_Flag enum */
+nco_esmf_crd_sys_sng /* [fnc] Convert ESMF coordinate system enum to string */
+(const int nco_esmf_crd_sys) /* I [enm] ESMF coordinate system enum ESMC_CoordSys_Flag */
+{
+ /* Purpose: Convert ESMF coordinate system enum ESMC_CoordSys_Flag to string */
+ switch(nco_esmf_crd_sys){
+ case ESMC_COORDSYS_INVALID: return "ESMC_COORDSYS_INVALID";
+ case ESMC_COORDSYS_UNINIT: return "ESMC_COORDSYS_UNINIT";
+ case ESMC_COORDSYS_CART: return "ESMC_COORDSYS_CART";
+ case ESMC_COORDSYS_SPH_DEG: return "ESMC_COORDSYS_SPH_DEG";
+ case ESMC_COORDSYS_SPH_RAD: return "ESMC_COORDSYS_SPH_RAD";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_crd_sys_sng() */
+
+const char * /* O [sng] String version of ESMC_TypeKind_Flag enum */
+nco_esmf_typ_knd_sng /* [fnc] Convert ESMF type kind enum to string */
+(const int nco_esmf_typ_knd) /* I [enm] ESMF type kind enum ESMC_TypeKind_Flag */
+{
+ /* Purpose: Convert ESMF type kind enum ESMC_TypeKind_Flag to string */
+ switch(nco_esmf_typ_knd){
+ case ESMC_TYPEKIND_I1: return "ESMC_TYPEKIND_I1";
+ case ESMC_TYPEKIND_I2: return "ESMC_TYPEKIND_I2";
+ case ESMC_TYPEKIND_I4: return "ESMC_TYPEKIND_I4";
+ case ESMC_TYPEKIND_I8: return "ESMC_TYPEKIND_I8";
+ case ESMC_TYPEKIND_R4: return "ESMC_TYPEKIND_R4";
+ case ESMC_TYPEKIND_R8: return "ESMC_TYPEKIND_R8";
+ case ESMC_TYPEKIND_LOGICAL: return "ESMC_TYPEKIND_LOGICAL";
+ case ESMC_TYPEKIND_CHARACTER: return "ESMC_TYPEKIND_CHARACTER";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_typ_knd_sng() */
+
+const char * /* O [sng] String version of ESMC_LogMsgType_Flag enum */
+nco_esmf_log_msg_sng /* [fnc] Convert ESMF log message type enum to string */
+(const int nco_esmf_log_msg) /* I [enm] ESMF log message type enum ESMC_LogMsgType_Flag */
+{
+ /* Purpose: Convert ESMF coordinate system enum ESMC_LogMsgType_Flag to string */
+ switch(nco_esmf_log_msg){
+ case ESMC_LOGMSG_INFO: return "ESMC_LOGMSG_INFO";
+ case ESMC_LOGMSG_WARN: return "ESMC_LOGMSG_WARN";
+ case ESMC_LOGMSG_ERROR: return "ESMC_LOGMSG_ERROR";
+ case ESMC_LOGMSG_TRACE: return "ESMC_LOGMSG_TRACE";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_log_msg_sng() */
+
+const char * /* O [sng] String version of ESMC_RegridMethod_Flag enum */
+nco_esmf_rgr_mth_sng /* [fnc] Convert ESMF regrid method type enum to string */
+(const int nco_esmf_rgr_mth) /* I [enm] ESMF regrid method type enum ESMC_RegridMethod_Flag */
+{
+ /* Purpose: Convert ESMF regrid method enum ESMC_RegridMethod_Flag to string */
+ switch(nco_esmf_rgr_mth){
+ case ESMC_REGRIDMETHOD_BILINEAR: return "ESMC_REGRIDMETHOD_BILINEAR";
+ case ESMC_REGRIDMETHOD_PATCH: return "ESMC_REGRIDMETHOD_PATCH";
+ case ESMC_REGRIDMETHOD_CONSERVE: return "ESMC_REGRIDMETHOD_CONSERVE";
+ case ESMC_REGRIDMETHOD_NEAREST_STOD: return "ESMC_REGRIDMETHOD_NEAREST_STOD";
+ case ESMC_REGRIDMETHOD_NEAREST_DTOS: return "ESMC_REGRIDMETHOD_NEAREST_DTOS";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_rgr_mth_sng() */
+
+const char * /* O [sng] String version of ESMC_PoleMethod_Flag enum */
+nco_esmf_pll_mth_sng /* [fnc] Convert ESMF pole method type enum to string */
+(const int nco_esmf_pll_mth) /* I [enm] ESMF pole method type enum ESMC_PoleMethod_Flag */
+{
+ /* Purpose: Convert ESMF pole method enum ESMC_PoleMethod_Flag to string */
+ switch(nco_esmf_pll_mth){
+ case ESMC_POLEMETHOD_NONE: return "ESMC_POLEMETHOD_NONE";
+ case ESMC_POLEMETHOD_ALLAVG: return "ESMC_POLEMETHOD_ALLAVG";
+ case ESMC_POLEMETHOD_NPNTAVG: return "ESMC_POLEMETHOD_NPNTAVG";
+ case ESMC_POLEMETHOD_TEETH: return "ESMC_POLEMETHOD_TEETH";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_pll_mth_sng() */
+
+const char * /* O [sng] String version of ESMC_UnmappedAction_Flag enum */
+nco_esmf_unm_act_sng /* [fnc] Convert ESMF unmapped action type enum to string */
+(const int nco_esmf_unm_act) /* I [enm] ESMF unmapped action type enum ESMC_UnmappedAction_Flag */
+{
+ /* Purpose: Convert ESMF unmapped action enum ESMC_UnmappedAction_Flag to string */
+ switch(nco_esmf_unm_act){
+ case ESMC_UNMAPPEDACTION_ERROR: return "ESMC_UNMAPPEDACTION_ERROR";
+ case ESMC_UNMAPPEDACTION_IGNORE: return "ESMC_UNMAPPEDACTION_IGNORE";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_unm_act_sng() */
+
+const char * /* O [sng] String version of ESMC_Region_Flag enum */
+nco_esmf_rgn_flg_sng /* [fnc] Convert ESMF region flag enum to string */
+(const int nco_esmf_rgn_flg) /* I [enm] ESMF region flag enum ESMC_Region_Flag */
+{
+ /* Purpose: Convert ESMF region flag enum ESMC_Region_Flag to string */
+ switch(nco_esmf_rgn_flg){
+ case ESMC_REGION_TOTAL: return "ESMC_REGION_TOTAL";
+ case ESMC_REGION_SELECT: return "ESMC_REGION_SELECT";
+ case ESMC_REGION_EMPTY: return "ESMC_REGION_EMPTY";
+ default: abort(); break;
+ } /* end switch */
+
+ /* Some compilers: e.g., SGI cc, need return statement to end non-void functions */
+ return (char *)NULL;
+} /* end nco_esmf_rgn_flg_sng() */
+
+int /* O [enm] Return code */
+nco_rgr_esmf /* [fnc] Regrid using ESMF library */
+(rgr_sct * const rgr_nfo) /* I/O [sct] Regridding structure */
+{
+ /* Purpose: Regrid fields
+ ESMC is C-interface to ESMF documented at
+ http://www.earthsystemmodeling.org/esmf_releases/last_built/ESMC_crefdoc/ESMC_crefdoc.html
+ ESMF Developer's Guide
+ http://www.earthsystemmodeling.org/documents/dev_guide
+ ESMF_RegridWeightGen
+ http://www.earthsystemcog.org/projects/regridweightgen
+ http://www.earthsystemmodeling.org/python_releases/last_esmpy/esmpy_doc/html/index.html
+
+ ESMF C-interface examples:
+ ${DATA}/esmf/src/Infrastructure/Field/tests/ESMC_FieldRegridUTest.C
+ ${DATA}/esmf/src/Infrastructure/Field/tests/ESMC_FieldRegridCsrvUTest.C */
+
+ const char fnc_nm[]="nco_rgr_esmf()"; /* [sng] Function name */
+ const char fl_nm_esmf_log[]="nco_rgr_log_foo.txt"; /* [sng] Log file for ESMF routines */
+
+ enum ESMC_StaggerLoc stg_lcn_src=ESMC_STAGGERLOC_CENTER; /* [enm] Stagger location of source grid */
+ enum ESMC_StaggerLoc stg_lcn_dst=ESMC_STAGGERLOC_CENTER; /* [enm] Stagger location of destination grid */
+
+ int flg_openMPEnabledFlag; /* [flg] ESMF library was compiled with OpenMP enabled */
+ int flg_pthreadsEnabledFlag; /* [flg] ESMF library was compiled with Pthreads enabled */
+ int localPet; /* [id] ID of PET that issued call */
+ int peCount; /* [nbr] Number of PEs referenced by ESMF_VM */
+ int petCount; /* [nbr] Number of PETs referenced by ESMF_VM */
+ int rcd_esmf; /* [enm] Return codes from ESMF functions */
+
+ int dmn_nbr_grd=2;
+ int rcd=ESMF_SUCCESS;
+
+ int *dmn_id;
+
+ int dmn_nbr;
+ int idx;
+ int var_in_id;
+
+ long *dmn_cnt;
+ long *dmn_srt;
+
+ nc_type var_typ_in;
+ nc_type var_typ_out=NC_DOUBLE;
+
+ double *lon_in;
+ double *lat_in;
+ void *void_ptr_var;
+
+ int in_id; /* I [id] Input netCDF file ID */
+ int out_id; /* I [id] Output netCDF file ID */
+
+ /* SCRIP rank-2 grids are almost always lat,lon (C) and lon,lat (Fortran)
+ Indexing is confusing because ESMF always uses Fortran-ordering convention with mixture of 0- and 1-based indices
+ netCDF always uses C-ordering convention with 0-based indices
+ No data transposition is necessary because variable RAM is always in C-order (same as netCDF)
+ However, Fortran and C (i.e., ESMF and netCDF) access that same RAM using different conventions
+ 2-D data are always C[lat,lon] or F(lon,lat) in practice
+ 2-D stored in netCDF or RAM as C[lon,lat] and F(lat,lon) are possible, though not seen in practice
+ NCO regridding below assumes data are in C[lat,lon] order
+ NCO hardcoded subscript conventions follow this pattern:
+ crd_idx_[axs]_[ibs]_[dmn]_[grd] where
+ axs = access convention = C or Fortran = _c_ or _f_
+ ibs = index base = 0 or 1 = _0bs_ or _1bs_ for zero-based or one-based indices
+ NB: axs is independent from ibs!
+ dmn = dimension = lon or lat
+ grd = grid = source or destination */
+ const int crd_idx_c_0bs_lat_dst=0; /* [dgr] 0-based index of latitude in C representation of rank-2 destination grids */
+ const int crd_idx_c_0bs_lon_dst=1; /* [dgr] 0-based index of longitude in C representation of rank-2 destination grids */
+ const int crd_idx_f_0bs_lat_dst=1; /* [dgr] 0-based index of latitude in Fortran representation of rank-2 destination grids */
+ const int crd_idx_f_0bs_lat_src=1; /* [dgr] 0-based index of latitude in Fortran representation of rank-2 source grids */
+ const int crd_idx_f_0bs_lon_dst=0; /* [dgr] 0-based index of longitude in Fortran representation of rank-2 destination grids */
+ const int crd_idx_f_0bs_lon_src=0; /* [dgr] 0-based index of longitude in Fortran representation of rank-2 source grids */
+ const int crd_idx_f_1bs_lat_dst=2; /* [dgr] 1-based index of latitude in Fortran representation of rank-2 destination grids */
+ const int crd_idx_f_1bs_lat_src=2; /* [dgr] 1-based index of latitude in Fortran representation of rank-2 source grids */
+ const int crd_idx_f_1bs_lon_dst=1; /* [dgr] 1-based index of longitude in Fortran representation of rank-2 destination grids */
+ const int crd_idx_f_1bs_lon_src=1; /* [dgr] 1-based index of longitude in Fortran representation of rank-2 source grids */
+
+ /* Initialize */
+ in_id=rgr_nfo->in_id;
+ out_id=rgr_nfo->out_id;
+
+ /* Obtain input longitude type and length */
+ char lon_nm_in[]="lon";
+ (void)nco_inq_varid(in_id,lon_nm_in,&var_in_id);
+ (void)nco_inq_var(in_id,var_in_id,(char *)NULL,&var_typ_in,&dmn_nbr,(int *)NULL,(int *)NULL);
+ if(var_typ_in != NC_DOUBLE){
+ assert(var_typ_in == NC_FLOAT);
+ if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"%s: INFO WARNING Cheapskate regridding input file %s stores coordinate as NC_FLOAT\n",nco_prg_nm_get(),rgr_nfo->fl_in);
+ } /* !var_typ_in */
+
+ /* Allocate space to hold dimension metadata */
+ dmn_cnt=(long *)nco_malloc(dmn_nbr*sizeof(long));
+ dmn_id=(int *)nco_malloc(dmn_nbr*sizeof(int));
+ dmn_srt=(long *)nco_malloc(dmn_nbr*sizeof(long));
+ (void)nco_inq_vardimid(in_id,var_in_id,dmn_id);
+ /* Get input dimension sizes */
+ long dmn_sz=1L; /* [nbr] Number of elements in dimension (will be self-multiplied) */
+ for(idx=0;idx<dmn_nbr;idx++){
+ (void)nco_inq_dimlen(in_id,dmn_id[idx],dmn_cnt+idx);
+ dmn_srt[idx]=0L;
+ dmn_sz*=dmn_cnt[idx];
+ } /* end loop over dim */
+
+ int *max_idx; /* [nbr] Zero-based array containing dimension sizes in order? */
+ max_idx=(int *)nco_malloc(dmn_nbr_grd*sizeof(int));
+ max_idx[crd_idx_f_0bs_lon_src]=dmn_sz; /* [nbr] Number of elements in dimensions */
+
+ /* Allocate space for and obtain longitude */
+ lon_in=(double *)nco_malloc(dmn_sz*nco_typ_lng(var_typ_out));
+ rcd=nco_get_vara(in_id,var_in_id,dmn_srt,dmn_cnt,lon_in,var_typ_out);
+
+ /* Obtain input latitude type and length */
+ char lat_nm_in[]="lat";
+ (void)nco_inq_varid(in_id,lat_nm_in,&var_in_id);
+ (void)nco_inq_var(in_id,var_in_id,(char *)NULL,&var_typ_in,&dmn_nbr,(int *)NULL,(int *)NULL);
+ if(var_typ_in != NC_DOUBLE){
+ assert(var_typ_in == NC_FLOAT);
+ if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"%s: INFO WARNING Cheapskate regridding input file %s stores coordinate as NC_FLOAT\n",nco_prg_nm_get(),rgr_nfo->fl_in);
+ } /* !var_typ_in */
+ (void)nco_inq_vardimid(in_id,var_in_id,dmn_id);
+ dmn_sz=1L;
+ /* Get dimension sizes from input file */
+ for(idx=0;idx<dmn_nbr;idx++){
+ (void)nco_inq_dimlen(in_id,dmn_id[idx],dmn_cnt+idx);
+ dmn_srt[idx]=0L;
+ dmn_sz*=dmn_cnt[idx];
+ } /* end loop over dim */
+ max_idx[crd_idx_f_0bs_lat_src]=dmn_sz; /* [nbr] Number of elements in dimensions */
+
+ /* Allocate space for and obtain latitude */
+ lat_in=(double *)nco_malloc(dmn_sz*nco_typ_lng(var_typ_out));
+ rcd=nco_get_vara(in_id,var_in_id,dmn_srt,dmn_cnt,lat_in,var_typ_out);
+
+ /* Initialize before any other ESMC API calls!
+ ESMC_ArgLast is ALWAYS at the end to indicate the end of opt args */
+ ESMC_Initialize(&rcd_esmf,
+ ESMC_InitArgDefaultCalKind(ESMC_CALKIND_GREGORIAN),
+ ESMC_InitArgLogFilename(fl_nm_esmf_log),
+ ESMC_InitArgLogKindFlag(ESMC_LOGKIND_MULTI),
+ ESMC_ArgLast);
+ enum ESMC_LogMsgType_Flag log_msg_typ=ESMC_LOGMSG_TRACE;
+ if(rcd_esmf != ESMF_SUCCESS){
+ ESMC_LogWrite("ESMC_Initialize() failed",log_msg_typ);
+ goto rgr_cln;
+ } /* endif */
+
+ /* Set log to flush after every message */
+ rcd_esmf=ESMC_LogSet(ESMF_TRUE);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ /* Obtain VM */
+ ESMC_VM vm;
+ vm=ESMC_VMGetGlobal(&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Set-up local PET info */
+ /* Source: ${DATA}/esmf/src/Infrastructure/VM/interface/ESMC_VM.C */
+ rcd_esmf=ESMC_VMGet(vm,&localPet,&petCount,&peCount,(MPI_Comm *)NULL,&flg_pthreadsEnabledFlag,&flg_openMPEnabledFlag);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Create destination grid from SCRIP file set as rgr_grd_dst */
+ int flg_isSphere=1; /* [flg] Set to 1 for a spherical grid, or 0 for regional. Defaults to 1. */
+ int flg_addCornerStagger=0; /* [flg] Add corner stagger to grid. Defaults to 0. */
+ int flg_addUserArea=0; /* [flg] Read cell area from Grid file (instead of calculate it). Defaults to 0. */
+ int flg_addMask=0; /* [flg] Generate mask using missing value attribute in var_nm (iff GRIDSPEC) */
+ /* 20150424: ESMF library bug at ESMCI_Grid.C line 365 means var_nm must non-NULL so set to blank name */
+ char var_nm[]=""; /* [sng] Iff addMask == 1 use this variable's missing value attribute */
+ char **crd_nm=NULL; /* [sng] Iff GRIDSPEC use these lon/lat variable coordinates */
+ enum ESMC_FileFormat_Flag grd_fl_typ=ESMC_FILEFORMAT_SCRIP;
+ ESMC_Grid grd_dst;
+ grd_dst=ESMC_GridCreateFromFile(rgr_nfo->fl_grd_dst,grd_fl_typ,&flg_isSphere,&flg_addCornerStagger,&flg_addUserArea,&flg_addMask,var_nm,crd_nm,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ int *msk_dst; /* [enm] Destination grid mask */
+ enum ESMC_GridItem_Flag grd_itm=ESMC_GRIDITEM_MASK;
+ msk_dst=ESMC_GridGetItem(grd_dst,grd_itm,stg_lcn_dst,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ int *bnd_lwr_dst=(int *)nco_malloc(dmn_nbr_grd*sizeof(int));
+ int *bnd_upr_dst=(int *)nco_malloc(dmn_nbr_grd*sizeof(int));
+ double *lon_dst; /* [dgr] Destination grid longitude */
+ double *lat_dst; /* [dgr] Destination grid latitude */
+ /* 20150427: Written documentation is somewhat inadequate or misleading to normal C-programmers
+ Some ESMC_Grid***() functions, like this one, return allocated void pointers that must be cast to desired numeric type
+ Source: ${DATA}/esmf/src/Infrastructure/Grid/interface/ESMC_Grid.C */
+ lon_dst=ESMC_GridGetCoord(grd_dst,crd_idx_f_1bs_lon_dst,stg_lcn_dst,bnd_lwr_dst,bnd_upr_dst,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ lat_dst=ESMC_GridGetCoord(grd_dst,crd_idx_f_1bs_lat_dst,stg_lcn_dst,bnd_lwr_dst,bnd_upr_dst,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ double *lon_out; /* [dgr] Longitude dimension for output file */
+ double *lat_out; /* [dgr] Latitude dimension for output file */
+ lon_out=(double *)nco_malloc(bnd_upr_dst[crd_idx_f_0bs_lon_dst]*sizeof(double));
+ lat_out=(double *)nco_malloc(bnd_upr_dst[crd_idx_f_0bs_lat_dst]*sizeof(double));
+ for(idx=0;idx<bnd_upr_dst[crd_idx_f_0bs_lon_dst];idx++) lon_out[idx]=lon_dst[idx];
+ for(idx=0;idx<bnd_upr_dst[crd_idx_f_0bs_lat_dst];idx++) lat_out[idx]=lat_dst[idx];
+ const long var_sz_dst=bnd_upr_dst[crd_idx_f_0bs_lon_dst]*bnd_upr_dst[crd_idx_f_0bs_lat_dst]; /* [nbr] Number of elements in variable */
+ for(idx=0;idx<var_sz_dst;idx++) msk_dst[idx]=0;
+
+ /* Create source grid with same sizes as those in input data file */
+ ESMC_InterfaceInt max_idx_src;
+ /* Source: ${DATA}/esmf/src/Infrastructure/Util/interface/ESMC_Interface.C
+ NB: ESMF is fragile in that dynamic memory provided as input to grids cannot be immediately freed
+ In other words, ESMF copies the values of pointers but not the contents of pointers to provided arrays
+ To be concrete, the max_idx array provided below cannot be freed until after the ESMC_Finalize() is called */
+ max_idx_src=ESMC_InterfaceIntCreate(max_idx,dmn_nbr_grd,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ enum ESMC_CoordSys_Flag crd_sys=ESMC_COORDSYS_SPH_DEG; /* NB: dyw sez ESMF supports ESMC_COORDSYS_SPH_DEG only */
+ enum ESMC_TypeKind_Flag typ_knd=ESMC_TYPEKIND_R8; /* NB: NCO default is to use double precision for coordinates */
+ ESMC_Grid grd_src;
+ /* Source: ${DATA}/esmf/src/Infrastructure/Grid/interface/ESMC_Grid.C */
+ grd_src=ESMC_GridCreateNoPeriDim(max_idx_src,&crd_sys,&typ_knd,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ /* fxm: why destroy this now? */
+ ESMC_InterfaceIntDestroy(&max_idx_src);
+ /* Define stagger locations on source grid. Necessary for remapping later? */
+ rcd_esmf=ESMC_GridAddCoord(grd_src,stg_lcn_src);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Allocate */
+ int *bnd_lwr_src=(int *)nco_malloc(dmn_nbr_grd*sizeof(int));
+ int *bnd_upr_src=(int *)nco_malloc(dmn_nbr_grd*sizeof(int));
+ double *lon_src; /* [dgr] Source grid longitude */
+ double *lat_src; /* [dgr] Source grid latitude */
+ lon_src=(double *)ESMC_GridGetCoord(grd_src,crd_idx_f_1bs_lon_src,stg_lcn_src,bnd_lwr_src,bnd_upr_src,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ lat_src=(double *)ESMC_GridGetCoord(grd_src,crd_idx_f_1bs_lat_src,stg_lcn_src,NULL,NULL,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ if(nco_dbg_lvl_get() >= nco_dbg_crr){
+ (void)fprintf(stderr,"%s: INFO %s reports\n",nco_prg_nm_get(),fnc_nm);
+ (void)fprintf(stderr,"ESMC_VMGet(): localPet = %d, petCount = %d, peCount = %d, pthreadsEnabledFlag = %s, openMPEnabledFlag = %s\n",localPet,petCount,peCount,flg_pthreadsEnabledFlag ? "Enabled" : "Disabled",flg_openMPEnabledFlag ? "Enabled" : "Disabled");
+ (void)fprintf(stderr,"ESMC_GridCreateFromFile(): filename = %s, fileTypeFlag = %s, isSphere = %s, addCornerStagger = %s, addUserArea = %s, addMask = %s, var_nm = %s, crd_nm = %s\n",rgr_nfo->fl_grd_dst,nco_esmf_fl_fmt_sng(grd_fl_typ),flg_isSphere ? "Enabled" : "Disabled",flg_addCornerStagger ? "Enabled" : "Disabled",flg_addUserArea ? "Enabled" : "Disabled",flg_addMask ? "Enabled" : "Disabled",var_nm,crd_nm ? "non-NULL" : "NULL");
+ (void)fprintf(stderr,"ESMC_GridGetCoord(): bnd_lwr_dst[0..1] = %d, %d; bnd_upr_dst[0..1] = %d, %d;\n",bnd_lwr_dst[0],bnd_lwr_dst[1],bnd_upr_dst[0],bnd_upr_dst[1]);
+ (void)fprintf(stderr,"ESMC_InterfaceIntCreate(): No printable information\n");
+ (void)fprintf(stderr,"ESMC_GridCreateNoPeriDim(): crd_sys = %s, typ_knd = %s\n",nco_esmf_crd_sys_sng(crd_sys),nco_esmf_typ_knd_sng(typ_knd));
+ (void)fprintf(stderr,"ESMC_GridAddCoord(): stg_lcn_src = %s, stg_lcn_dst = %s\n",nco_esmf_stg_lcn_sng(stg_lcn_src),nco_esmf_stg_lcn_sng(stg_lcn_dst));
+ (void)fprintf(stderr,"ESMC_GridGetCoord(): bnd_lwr_src[0..1] = %d, %d; bnd_upr_src[0..1] = %d, %d;\n",bnd_lwr_src[0],bnd_lwr_src[1],bnd_upr_src[0],bnd_upr_src[1]);
+ // (void)fprintf(stderr,"ESMC_InterfaceIntCreate(): max_idx_src[0..1] = %d, %d\n",max_idx_src[0],max_idx_src[1]);
+ } /* endif dbg */
+
+ /* Type-conversion and cell-center coordinates */
+ for(idx=0;idx<bnd_upr_src[crd_idx_f_0bs_lat_src];idx++) lat_src[idx]=lat_in[idx];
+ for(idx=0;idx<bnd_upr_src[crd_idx_f_0bs_lon_src];idx++) lon_src[idx]=lon_in[idx];
+ idx=0;
+ for(int idx_lat=0;idx_lat<bnd_upr_src[crd_idx_f_0bs_lat_src];idx_lat++){
+ for(int idx_lon=0;idx_lon<bnd_upr_src[crd_idx_f_0bs_lon_src];idx_lon++){
+ lon_src[idx]=lon_in[idx_lon];
+ lat_src[idx]=lat_in[idx_lat];
+ idx++;
+ } /* endfor */
+ } /* endfor */
+
+ /* Create source field from source grid */
+ ESMC_Field fld_src;
+ ESMC_InterfaceInt *gridToFieldMap=NULL; /* [idx] Map of all grid dimensions to field dimensions */
+ ESMC_InterfaceInt *ungriddedLBound=NULL; /* [idx] Lower bounds of ungridded dimensions */
+ ESMC_InterfaceInt *ungriddedUBound=NULL; /* [idx] Upper bounds of ungridded dimensions */
+ fld_src=ESMC_FieldCreateGridTypeKind(grd_src,typ_knd,stg_lcn_src,gridToFieldMap,ungriddedLBound,ungriddedUBound,"fld_src",&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ /* Create destination field from destination grid */
+ ESMC_Field fld_dst;
+ fld_dst=ESMC_FieldCreateGridTypeKind(grd_dst,typ_knd,stg_lcn_dst,gridToFieldMap,ungriddedLBound,ungriddedUBound,"fld_dst",&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Get field pointers */
+ double *fld_src_ptr;
+ int localDe=0; /* [idx] Local DE for which information is requested [0..localDeCount-1] */
+ fld_src_ptr=(double *)ESMC_FieldGetPtr(fld_src,localDe,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+ double *fld_dst_ptr;
+ fld_dst_ptr=(double *)ESMC_FieldGetPtr(fld_dst,localDe,&rcd_esmf);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Get variables from input file */
+ (void)nco_inq_varid(in_id,rgr_nfo->var_nm,&var_in_id);
+ (void)nco_inq_var(in_id,var_in_id,(char *)NULL,&var_typ_in,&dmn_nbr,(int *)NULL,(int *)NULL);
+ /* Get dimension IDs from input file */
+ (void)nco_inq_vardimid(in_id,var_in_id,dmn_id);
+ long var_sz_src=1L; /* [nbr] Number of elements in variable (will be self-multiplied) */
+ /* Get input dimension sizes */
+ for(idx=0;idx<dmn_nbr;idx++){
+ (void)nco_inq_dimlen(in_id,dmn_id[idx],dmn_cnt+idx);
+ dmn_srt[idx]=0L;
+ var_sz_src*=dmn_cnt[idx];
+ } /* end loop over dim */
+
+ /* Allocate space for and obtain input latitude */
+ void_ptr_var=(void *)nco_malloc_dbg(var_sz_src*nco_typ_lng(var_typ_in),"Unable to malloc() value buffer when copying hyperslab from input to output file",fnc_nm);
+ rcd=nco_get_vara(in_id,var_in_id,dmn_srt,dmn_cnt,void_ptr_var,var_typ_in);
+ float *var_fld=(float *)void_ptr_var;
+
+ /* Type-conversion and ensure every cell has data */
+ idx=0;
+ for(int idx_lat=bnd_lwr_src[crd_idx_f_0bs_lat_src];idx_lat<=bnd_upr_src[crd_idx_f_0bs_lat_src];idx_lat++){
+ for(int idx_lon=bnd_lwr_src[crd_idx_f_0bs_lon_src];idx_lon<=bnd_upr_src[crd_idx_f_0bs_lon_src];idx_lon++){
+ fld_src_ptr[idx]=(double)var_fld[idx];
+ idx++;
+ } /* idx_lon */
+ } /* idx_lat */
+
+ /* Initialize dst data ptr */
+ idx=0;
+ for(int idx_lat=bnd_lwr_dst[crd_idx_f_0bs_lat_src];idx_lat<=bnd_upr_dst[crd_idx_f_0bs_lat_src];idx_lat++){
+ for(int idx_lon=bnd_lwr_dst[crd_idx_f_0bs_lon_src];idx_lon<=bnd_upr_dst[crd_idx_f_0bs_lon_src];idx_lon++){
+ fld_dst_ptr[idx]=0.0;
+ idx++;
+ } /* idx_lon */
+ } /* idx_lat */
+
+ ESMC_LogWrite("nco_rgr_esmf() invoking ESMC to start regridstore actions",log_msg_typ);
+ /* int *msk_val=(int *)nco_malloc(sizeof(int));
+ msk_val[0]=1;
+ ESMC_InterfaceInt i_msk_val=ESMC_InterfaceIntCreate(msk_val,1,&rcd_esmf);
+ rcd_esmf = ESMC_FieldRegridStore(fld_src,fld_dst,&i_msk_val,&i_msk_val,&rte_hnd,NULL,NULL,NULL,&unmap_act,NULL,NULL);
+ rcd_esmf=ESMC_FieldRegridStore(fld_src,fld_dst,NULL,NULL,&rte_hnd,NULL,NULL,NULL,&unmap_act,NULL,NULL); */
+
+ ESMC_Field *cll_frc_dst=NULL; /* [frc] Fraction of each cell participating in regridding, destination grid */
+ ESMC_Field *cll_frc_src=NULL; /* [frc] Fraction of each cell participating in regridding, source grid */
+ ESMC_InterfaceInt *msk_src_rgr=NULL; /* [idx] Points to mask while regridding, source grid */
+ /* fxm: unsure whether/why need both msk_dst (above) and msk_dst_rgr (below) */
+ ESMC_InterfaceInt *msk_dst_rgr=NULL; /* [idx] Points to mask while regridding, destination grid */
+ ESMC_RouteHandle rte_hnd;
+ enum ESMC_RegridMethod_Flag rgr_mth=ESMC_REGRIDMETHOD_BILINEAR; /* [flg] Regrid method (default bilinear) */
+ enum ESMC_PoleMethod_Flag pll_mth=ESMC_POLEMETHOD_ALLAVG; /* [flg] Regrid method (default ESMC_POLEMETHOD_ALLAVG) */
+ enum ESMC_UnmappedAction_Flag unm_act=ESMC_UNMAPPEDACTION_ERROR; /* [flg] Unmapped action (default ESMC_UNMAPPEDACTION_ERROR) */
+ int pll_nbr=int_CEWI; /* [nbr] Number of points to average (iff ESMC_POLEMETHOD_NPNTAVG) */
+ /* Source: ${DATA}/esmf/src/Infrastructure/Field/interface/ESMC_Field.C */
+ rcd_esmf=ESMC_FieldRegridStore(fld_src,fld_dst,msk_src_rgr,msk_dst_rgr,&rte_hnd,&rgr_mth,&pll_mth,&pll_nbr,&unm_act,cll_frc_src,cll_frc_dst);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ enum ESMC_Region_Flag rgn_flg=ESMC_REGION_TOTAL; /* [flg] Whether/how to zero input fields before regridding (default ESMC_REGION_TOTAL) */
+ rcd_esmf=ESMC_FieldRegrid(fld_src,fld_dst,rte_hnd,&rgn_flg);
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Call once on each PET */
+ rcd_esmf=ESMC_Finalize();
+ if(rcd_esmf != ESMF_SUCCESS) goto rgr_cln;
+
+ /* Write regridded data to netCDF file */
+ int var_out_id; /* [id] Variable ID */
+ int lon_out_id; /* [id] Variable ID for longitude */
+ int lat_out_id; /* [id] Variable ID for latitude */
+ int dmn_id_lat; /* [id] Dimension ID */
+ int dmn_id_lon; /* [id] Dimension ID */
+ (void)nco_def_dim(out_id,lat_nm_in,bnd_upr_dst[crd_idx_f_0bs_lat_dst],&dmn_id_lat);
+ (void)nco_def_dim(out_id,lon_nm_in,bnd_upr_dst[crd_idx_f_0bs_lon_dst],&dmn_id_lon);
+ int dmn_ids_out[2]; /* [id] Dimension IDs array for output variable */
+ long dmn_srt_out[2];
+ long dmn_cnt_out[2];
+ dmn_ids_out[crd_idx_c_0bs_lat_dst]=dmn_id_lat;
+ dmn_ids_out[crd_idx_c_0bs_lon_dst]=dmn_id_lon;
+ (void)nco_def_var(out_id,lon_nm_in,var_typ_out,1,&dmn_id_lon,&lon_out_id);
+ (void)nco_def_var(out_id,lat_nm_in,var_typ_out,1,&dmn_id_lat,&lat_out_id);
+ (void)nco_def_var(out_id,rgr_nfo->var_nm,var_typ_out,2,dmn_ids_out,&var_out_id);
+ (void)nco_enddef(out_id);
+ dmn_srt_out[crd_idx_c_0bs_lat_dst]=0L;
+ dmn_srt_out[crd_idx_c_0bs_lon_dst]=0L;
+ dmn_cnt_out[crd_idx_c_0bs_lat_dst]=bnd_upr_dst[crd_idx_f_0bs_lat_dst];
+ dmn_cnt_out[crd_idx_c_0bs_lon_dst]=bnd_upr_dst[crd_idx_f_0bs_lon_dst];
+ (void)nco_put_vara(out_id,lat_out_id,dmn_srt_out,dmn_cnt_out,lat_out,var_typ_out);
+ (void)nco_put_vara(out_id,lon_out_id,dmn_srt_out,dmn_cnt_out,lon_out,var_typ_out);
+ (void)nco_put_vara(out_id,var_out_id,dmn_srt_out,dmn_cnt_out,fld_dst_ptr,var_typ_out);
+
+rgr_cln:
+ if(rcd_esmf != ESMF_SUCCESS){
+ /* ESMF return codes are enumerated in ESMC_ReturnCodes.h and ESMC_LogErr.h
+ However, there seems to be no translator function for these codes */
+ (void)fprintf(stderr,"%s: ERROR %s received ESMF return code %d\nSee ESMC_ReturnCodes.h or ESMC_LogErr.h for more information, e.g.,\n/bin/more /usr/local/include/ESMC_ReturnCodes.h | grep %d\n",nco_prg_nm_get(),fnc_nm,rcd_esmf,rcd_esmf);
+ } /* rcd_esmf */
+ if(max_idx) max_idx=(int *)nco_free(max_idx);
+ if(bnd_lwr_src) bnd_lwr_src=(int *)nco_free(bnd_lwr_src);
+ if(bnd_upr_src) bnd_upr_src=(int *)nco_free(bnd_upr_src);
+ if(bnd_lwr_dst) bnd_lwr_dst=(int *)nco_free(bnd_lwr_dst);
+ if(bnd_upr_dst) bnd_upr_dst=(int *)nco_free(bnd_upr_dst);
+ if(void_ptr_var) void_ptr_var=(void *)nco_free(void_ptr_var);
+ if(lat_out) lat_out=(double *)nco_free(lat_out);
+ if(lon_out) lon_out=(double *)nco_free(lon_out);
+ if(dmn_cnt) dmn_cnt=(long *)nco_free(dmn_cnt);
+ if(dmn_id) dmn_id=(int *)nco_free(dmn_id);
+ if(dmn_srt) dmn_srt=(long *)nco_free(dmn_srt);
+
+ rcd_esmf=ESMC_FieldRegridRelease(&rte_hnd);
+ rcd_esmf=ESMC_FieldDestroy(&fld_src);
+ rcd_esmf=ESMC_FieldDestroy(&fld_dst);
+ rcd_esmf=ESMC_GridDestroy(&grd_src);
+ rcd_esmf=ESMC_GridDestroy(&grd_dst);
+ ESMC_Finalize();
+
+ return rcd;
+} /* nco_rgr_esmf */
+#endif /* !ENABLE_ESMF */
+
diff --git a/src/nco/nco_rgr.h b/src/nco/nco_rgr.h
new file mode 100644
index 0000000..588cfb9
--- /dev/null
+++ b/src/nco/nco_rgr.h
@@ -0,0 +1,185 @@
+/* $Header$ */
+
+/* Purpose: Description (definition) of regridding functions */
+
+/* Copyright (C) 2015--2015 Charlie Zender
+ This file is part of NCO, the netCDF Operators. NCO is free software.
+ You may redistribute and/or modify NCO under the terms of the
+ GNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file */
+
+/* Usage:
+ #include "nco_rgr.h" *//* Regridding */
+
+#ifndef NCO_RGR_H
+#define NCO_RGR_H
+
+/* Standard header files */
+#include <stdio.h> /* stderr, FILE, NULL, printf */
+#include <stdlib.h> /* atof, atoi, malloc, getopt */
+
+/* 3rd party vendors */
+#include <netcdf.h> /* netCDF definitions and C library */
+#include "nco_netcdf.h" /* NCO wrappers for netCDF C library */
+#ifdef ENABLE_ESMF
+# include <ESMC.h> /* ESMF definitions */
+#endif /* !ENABLE_ESMF */
+
+/* Personal headers */
+#include "nco.h" /* netCDF Operator (NCO) definitions */
+#include "nco_mmr.h" /* Memory management */
+#include "nco_sng_utl.h" /* String utilities */
+
+#ifdef __cplusplus
+extern "C" {
+#endif /* __cplusplus */
+
+ typedef enum nco_rgr_cmd_typ_enm{ /* [enm] Tempest remap type enum */
+ nco_rgr_AAA_nil=0,
+ nco_rgr_ApplyOfflineMap,
+ nco_rgr_CalculateDiffNorms,
+ nco_rgr_GenerateCSMesh,
+ nco_rgr_GenerateGLLMetaData,
+ nco_rgr_GenerateICOMesh,
+ nco_rgr_GenerateLambertConfConicMesh,
+ nco_rgr_GenerateOfflineMap,
+ nco_rgr_GenerateOverlapMesh,
+ nco_rgr_GenerateRLLMesh,
+ nco_rgr_GenerateTestData,
+ nco_rgr_MeshToTxt,
+ nco_rgr_ZZZ_last
+ } nco_rgr_cmd_typ;
+
+ typedef enum nco_rgr_mpf_typ_enm{ /* [enm] Mapfile type enum */
+ nco_rgr_mpf_nil=0,
+ nco_rgr_mpf_SCRIP,
+ nco_rgr_mpf_ESMF
+ } nco_rgr_mpf_typ_enm;
+
+ /* ESMF: The normalization attribute describes how the conservative weights are calculated, currently this is always set to "destarea" because this is the only option which we currently support. The setting "destarea" means that the conservative weights are calculated by dividing the area of the intersection of the source and destination cells by the area of the destination cell. This is set even when the weights are not conservative in which case it can be ignored. */
+ typedef enum nco_rgr_nrm_typ_enm{ /* [enm] Normalization type enum */
+ nco_rgr_nrm_nil=0,
+ nco_rgr_nrm_fracarea, /* [] Allowed and explained by SCRIP */
+ nco_rgr_nrm_destarea, /* [] Only option supported by ESMF, ignored when non-conservative methods used */
+ nco_rgr_nrm_none, /* [] Allowed and explained by SCRIP */
+ } nco_rgr_nrm_typ_enm;
+
+ /* ESMF: The map_method attribute indicates the interpolation type. The format of the interpolation weight file was developed by a group outside of ESMF, because of its use by utilities outside of ESMF control, the range of some of the meta data is constrained. The map_method is one of these. Because of this constraint, there is no map method corresponding to patch interpolation. A weight file generated with the "patch" interpolation method will have map_method set to "Bilinear remappi [...]
+ typedef enum nco_rgr_mth_typ_enm{ /* [enm] Mapfile type enum */
+ nco_rgr_mth_nil=0,
+ nco_rgr_mth_conservative,
+ nco_rgr_mth_bilinear,
+ nco_rgr_mth_none, /* [] */
+ } nco_rgr_mth_typ_enm;
+
+ typedef struct{ /* nco_map_sct */
+ /* Contents of SCRIP-generated or -compliant remapping file */
+ long int src_grid_size; /* [nbr] Source grid size (src_grid_size or n_a) */
+ long int dst_grid_size; /* [nbr] Destination grid size (dst_grid_size or n_b) */
+ long int src_grid_corners; /* [nbr] Source grid corners/vertices per gridcell (src_grid_corners or nv_a) */
+ long int dst_grid_corners; /* [nbr] Destination grid corners/vertices per gridcell (dst_grid_corners or nv_b) */
+ long int src_grid_rank; /* [nbr] Source grid rank */
+ long int dst_grid_rank; /* [nbr] Destination grid rank */
+ long int num_links; /* [nbr] Number of links (num_links or n_s) */
+ long int num_wgts; /* [nbr] Number of weights */
+ char *normalization; /* [sng] Normalization type */
+ char *map_method; /* [sng] Remapping method */
+ char *source_grid; /* [sng] Source grid */
+ char *dest_grid; /* [sng] Destination grid */
+ } nco_map_sct;
+
+ int /* O [enm] Return code */
+ nco_rgr_map /* [fnc] Regrid using external weights */
+ (rgr_sct * const rgr_nfo); /* I/O [sct] Regridding structure */
+
+ int /* O [enm] Return code */
+ nco_rgr_ctl /* [fnc] Control regridding logic */
+ (rgr_sct * const rgr_nfo); /* I/O [sct] Regridding structure */
+
+ int /* O [enm] Return code */
+ nco_rgr_ini /* [fnc] Initialize regridding structure */
+ (const int in_id, /* I [id] Input netCDF file ID */
+ char **rgr_arg, /* [sng] Regridding arguments */
+ const int rgr_nbr, /* [nbr] Number of regridding arguments */
+ char * const rgr_in, /* I [sng] File containing fields to be regridded */
+ char * const rgr_out, /* I [sng] File containing regridded fields */
+ char * const rgr_grd_src, /* I [sng] File containing input grid */
+ char * const rgr_grd_dst, /* I [sng] File containing destination grid */
+ char * const rgr_map, /* I [sng] File containing mapping weights from source to destination grid */
+ char * const rgr_var, /* I [sng] Variable for special regridding treatment */
+ rgr_sct * const rgr_nfo); /* O [sct] Regridding structure */
+
+ void
+ nco_rgr_free /* [fnc] Deallocate regridding structure */
+ (rgr_sct * const rgr_nfo); /* I/O [sct] Regridding structure */
+
+ int /* O [enm] Return code */
+ nco_rgr_tps /* [fnc] Regrid using Tempest library */
+ (rgr_sct * const rgr_nfo); /* I/O [sct] Regridding structure */
+
+ const char * /* O [sng] String describing regridding method */
+ nco_rgr_mth_sng /* [fnc] Convert regridding method enum to string */
+ (const nco_rgr_mth_typ_enm nco_rgr_mth_typ); /* I [enm] Regridding method enum */
+
+ const char * /* O [sng] String describing regridding normalization */
+ nco_rgr_nrm_sng /* [fnc] Convert regridding normalization enum to string */
+ (const nco_rgr_nrm_typ_enm nco_rgr_nrm_typ); /* I [enm] Regridding normalization enum */
+
+ const char * /* O [sng] String containing regridding command and format */
+ nco_tps_cmd_fmt_sng /* [fnc] Convert Tempest remap command enum to command string */
+ (const nco_rgr_cmd_typ nco_rgr_cmd); /* I [enm] Tempest remap command enum */
+
+ const char * /* O [sng] String containing regridding command name */
+ nco_tps_cmd_sng /* [fnc] Convert Tempest remap command enum to command name */
+ (const nco_rgr_cmd_typ nco_rgr_cmd); /* I [enm] Tempest remap command enum */
+
+#ifdef ENABLE_ESMF
+ int /* O [enm] Return code */
+ nco_rgr_esmf /* [fnc] Regrid using ESMF library */
+ (rgr_sct * const rgr_nfo); /* I/O [sct] Regridding structure */
+
+ const char * /* O [sng] String version of ESMC_StaggerLoc enum */
+ nco_esmf_stg_lcn_sng /* [fnc] Convert ESMF stagger location enum to string */
+ (const int nco_esmf_stg_lcn); /* I [enm] ESMF stagger location enum ESMC_StaggerLoc */
+
+ const char * /* O [sng] String version of ESMC_CoordSys_Flag enum */
+ nco_esmf_crd_sys_sng /* [fnc] Convert ESMF coordinate system enum to string */
+ (const int nco_esmf_crd_sys); /* I [enm] ESMF coordinate system enum ESMC_CoordSys_Flag */
+
+ const char * /* O [sng] String version of ESMC_FileFormat_Flag */
+ nco_esmf_fl_fmt_sng /* [fnc] Convert ESMF file format to string */
+ (const int nco_esmf_fl_fmt); /* I [enm] ESMF file format enum ESMC_FileFormat_Flag */
+
+ const char * /* O [sng] String version of ESMC_GridItem_Flag enum */
+ nco_esmf_grd_itm_sng /* [fnc] Convert ESMF grid item enum to string */
+ (const int nco_esmf_grd_itm); /* I [enm] ESMF grid item enum ESMC_GridItem_Flag */
+
+ const char * /* O [sng] String version of ESMC_LogMsgType_Flag enum */
+ nco_esmf_log_msg_sng /* [fnc] Convert ESMF log message type enum to string */
+ (const int nco_esmf_log_msg); /* I [enm] ESMF log message type enum ESMC_LogMsgType_Flag */
+
+ const char * /* O [sng] String version of ESMC_PoleMethod_Flag enum */
+ nco_esmf_pll_mth_sng /* [fnc] Convert ESMF pole method type enum to string */
+ (const int nco_esmf_pll_mth); /* I [enm] ESMF pole method type enum ESMC_PoleMethod_Flag */
+
+ const char * /* O [sng] String version of ESMC_Region_Flag enum */
+ nco_esmf_rgn_flg_sng /* [fnc] Convert ESMF region flag enum to string */
+ (const int nco_esmf_rgn_flg); /* I [enm] ESMF region flag enum ESMC_Region_Flag */
+
+ const char * /* O [sng] String version of ESMC_RegridMethod_Flag enum */
+ nco_esmf_rgr_mth_sng /* [fnc] Convert ESMF regrid method type enum to string */
+ (const int nco_esmf_rgr_mth); /* I [enm] ESMF regrid method type enum ESMC_RegridMethod_Flag */
+
+ const char * /* O [sng] String version of ESMC_TypeKind_Flag enum */
+ nco_esmf_typ_knd_sng /* [fnc] Convert ESMF type kind enum to string */
+ (const int nco_esmf_typ_knd); /* I [enm] ESMF type kind enum ESMC_TypeKind_Flag */
+
+ const char * /* O [sng] String version of ESMC_UnmappedAction_Flag enum */
+ nco_esmf_unm_act_sng /* [fnc] Convert ESMF unmapped action type enum to string */
+ (const int nco_esmf_unm_act); /* I [enm] ESMF unmapped action type enum ESMC_UnmappedAction_Flag */
+#endif /* !ENABLE_ESMF */
+
+#ifdef __cplusplus
+} /* end extern "C" */
+#endif /* __cplusplus */
+
+#endif /* NCO_RGR_H */
diff --git a/src/nco/nco_rth_flt.c b/src/nco/nco_rth_flt.c
index 941764c..ead1eb7 100644
--- a/src/nco/nco_rth_flt.c
+++ b/src/nco/nco_rth_flt.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rth_flt.c,v 1.42 2015/02/04 04:16:24 zender Exp $ */
+/* $Header$ */
/* Purpose: Float-precision arithmetic, MSVC macros */
diff --git a/src/nco/nco_rth_flt.h b/src/nco/nco_rth_flt.h
index 5cf6f97..9be7c85 100644
--- a/src/nco/nco_rth_flt.h
+++ b/src/nco/nco_rth_flt.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rth_flt.h,v 1.53 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Float-precision arithmetic, MSVC macros */
diff --git a/src/nco/nco_rth_utl.c b/src/nco/nco_rth_utl.c
index 8be01e6..75c3b9b 100644
--- a/src/nco/nco_rth_utl.c
+++ b/src/nco/nco_rth_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rth_utl.c,v 1.73 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: Arithmetic controls and utilities */
@@ -132,7 +132,7 @@ nco_opr_drv /* [fnc] Intermediate control of arithmetic operations for ncra/nces
The total, min, max, rms, etc. of the grid usually makes no sense
Users are most interested in the mean grid coordinate
20130112: The same logic applies to CF-style coordinates, e.g.,
- to variables matching the CF "bounds" and "coordinates" conventions */
+ to variables matching CF "bounds", "climatology", and "coordinates" conventions */
if(var_prc->is_crd_var){
(void)nco_var_add_tll_ncra(var_prc->type,var_prc->sz,var_prc->has_mss_val,var_prc->mss_val,var_prc->tally,var_prc->val,var_prc_out->val);
return;
diff --git a/src/nco/nco_rth_utl.h b/src/nco/nco_rth_utl.h
index d9e25b3..bfb4714 100644
--- a/src/nco/nco_rth_utl.h
+++ b/src/nco/nco_rth_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_rth_utl.h,v 1.45 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Arithmetic controls and utilities */
diff --git a/src/nco/nco_scl_utl.c b/src/nco/nco_scl_utl.c
index 29dd75b..e5cf062 100644
--- a/src/nco/nco_scl_utl.c
+++ b/src/nco/nco_scl_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_scl_utl.c,v 1.33 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Scalar utilities */
diff --git a/src/nco/nco_scl_utl.h b/src/nco/nco_scl_utl.h
index c33262e..48d26f4 100644
--- a/src/nco/nco_scl_utl.h
+++ b/src/nco/nco_scl_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_scl_utl.h,v 1.26 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Scalar utilities */
diff --git a/src/nco/nco_scm.c b/src/nco/nco_scm.c
index df9b216..2ed6f97 100644
--- a/src/nco/nco_scm.c
+++ b/src/nco/nco_scm.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_scm.c,v 1.60 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Software configuration management */
@@ -31,7 +31,7 @@ cvs_vrs_prs(void) /* [fnc] Return CVS version string */
/* Unexpanded cvs keywords in cvs_Name trigger GCC 4.0+ warning
"./src/nco/nco_scm.c:81: warning: offset outside bounds of constant string"
because routine looks for cvs_Name+7 later on */
- char cvs_Name[]="$Name: nco-4_4_8 $";
+ char cvs_Name[]="$Name$";
const char dlr_nm_cln_spc[]="$Name: "; /* [sng] Dollar name colon space */
const char nco_sng[]="nco";
const char spc_dlr[]=" $"; /* [sng] Space dollar */
@@ -149,7 +149,7 @@ nco_cpy_prn(void) /* [fnc] Print copyright notice */
{
/* Purpose: Print copyright notice */
(void)fprintf(stderr,"Copyright (C) 1995--2015 Charlie Zender\n");
- (void)fprintf(stdout,"This program is part of NCO, the netCDF Operators.\nNCO is free software and comes with a BIG FAT KISS and ABOLUTELY NO WARRANTY\nYou may redistribute and/or modify NCO under the terms of the\nGNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file\nGPL: http://www.gnu.org/copyleft/gpl.html\nLICENSE: http://nco.cvs.sf.net/nco/nco/LICENSE\n");
+ (void)fprintf(stdout,"This program is part of NCO, the netCDF Operators.\nNCO is free software and comes with a BIG FAT KISS and ABOLUTELY NO WARRANTY\nYou may redistribute and/or modify NCO under the terms of the\nGNU General Public License (GPL) Version 3 with exceptions described in the LICENSE file\nGPL: http://www.gnu.org/copyleft/gpl.html\nLICENSE: https://github.com/czender/nco/tree/master/LICENSE\n");
} /* end copyright_prn() */
void
diff --git a/src/nco/nco_scm.h b/src/nco/nco_scm.h
index 49b283d..8decff9 100644
--- a/src/nco/nco_scm.h
+++ b/src/nco/nco_scm.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_scm.h,v 1.27 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Software configuration management */
diff --git a/src/nco/nco_sld.c b/src/nco/nco_sld.c
index ce93e75..3ddd82d 100644
--- a/src/nco/nco_sld.c
+++ b/src/nco/nco_sld.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sld.c,v 1.26 2015/02/16 23:33:51 zender Exp $ */
+/* $Header$ */
/* Purpose: NCO utilities for Swath-Like Data (SLD) */
@@ -12,499 +12,45 @@
#include "nco_sld.h" /* Swath-Like Data */
-kvmap_sct nco_sng2map /* [fnc] parsing string to key-value pair */
-(char *sng, /* I [sng] string to parse with a = */
- kvmap_sct kvm) /* O [sct] key-value pair */
+int /* O [rcd] Return code */
+nco_scrip_read /* [fnc] Read, parse, and print contents of SCRIP file */
+(char *fl_scrip, /* SCRIP file name with proper path */
+ kvm_sct *kvm_scrip)/* structure to hold contents of SCRIP file */
{
- char *prt;
-
- int icnt=0;
-
- prt=strtok(sng,"=");
- while(prt){
- icnt++;
- nco_sng_strip(prt);
- switch(icnt){
- case 1:
- kvm.key=strdup(prt);
- break;
- case 2:
- kvm.value=strdup(prt);
- break;
- default:
- (void)fprintf(stderr,"Cannot get key-value pair from this input: %s\n",sng);
- break;
- }/* end switch */
- prt=strtok(NULL,"=");
- }/* end while */
- return kvm;
-} /* end nco_sng2map() */
-
-void
-nco_ppc_att_prc /* [fnc] Create PPC attribute */
-(const int nc_id, /* I [id] Input netCDF file ID */
- const trv_tbl_sct * const trv_tbl) /* I [sct] GTT (Group Traversal Table) */
-{
- /* NB: Can fail when output file has fewer variables than input file (i.e., was subsetted)
- 20150126: functionality moved to nco_xtr_dfn() */
- aed_sct aed;
- char att_nm_dsd[]="least_significant_digit";
- char att_nm_nsd[]="number_of_significant_digits";
- int grp_id; /* [id] Group ID */
- int var_id; /* [id] Variable ID */
- int ppc;
- int rcd=NC_NOERR;
- long att_sz;
- nc_type att_typ;
- ptr_unn att_val;
- int ppc_xst;
-
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- ppc=trv_tbl->lst[idx_tbl].ppc;
- if(ppc == NC_MAX_INT) continue;
- trv_sct var_trv=trv_tbl->lst[idx_tbl];
- aed.var_nm=strdup(var_trv.nm);
- (void)nco_inq_grp_full_ncid(nc_id,var_trv.grp_nm_fll,&grp_id); /* Obtain group ID */
- (void)nco_inq_varid(grp_id,var_trv.nm,&var_id); /* Obtain variable ID */
- att_val.ip=&ppc;
- aed.id=var_id;
- aed.val=att_val;
- if(var_trv.flg_nsd) aed.att_nm=att_nm_nsd; else aed.att_nm=att_nm_dsd;
- aed.type=NC_INT; /* NB: value changes if it is assigned outside for loop */
- aed.sz=1L;
- aed.mode=aed_create;
- rcd=nco_inq_att_flg(nc_id,var_id,aed.att_nm,&att_typ,&att_sz);
- if(rcd == NC_NOERR && aed.sz == att_sz && aed.type == att_typ){
- (void)nco_get_att(nc_id,var_id,aed.att_nm,&ppc_xst,att_typ);
- if(ppc < ppc_xst) aed.mode=aed_overwrite;
- else continue; /* no changes needed */
- } /* endif */
- (void)nco_aed_prc(nc_id,var_id,aed);
- } /* end loop */
-} /* end nco_ppc_att_prc() */
-
-void
-nco_ppc_ini /* Set PPC based on user specifications */
-(const int nc_id, /* I [id] netCDF input file ID */
- int *dfl_lvl, /* O [enm] Deflate level */
- const int fl_out_fmt, /* I [enm] Output file format */
- char * const ppc_arg[], /* I [sng] List of user-specified PPC */
- const int ppc_nbr, /* I [nbr] Number of PPC specified */
- trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
-{
- int idx;
- int ippc=0;
- kvmap_sct *ppc_lst; /* [sct] PPC container */
- kvmap_sct kvm;
-
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC){
- /* If user did not explicitly set deflate level for this file ... */
- if(*dfl_lvl == NCO_DFL_LVL_UNDEFINED){
- *dfl_lvl=1;
- if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"%s: INFO Precision-Preserving Compression (PPC) automatically activating file-wide deflation level = %d\n",nco_prg_nm_get(),*dfl_lvl);
- } /* endif */
- }else{
- if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stderr,"%s: INFO Requested Precision-Preserving Compression (PPC) on netCDF3 output dataset. Unlike netCDF4, netCDF3 does not support internal compression. To take full advantage of PPC consider writing file as netCDF4 enhanced (e.g., %s -4 ...) or classic (e.g., %s -7 ...). Or consider compressing the netCDF3 file afterwards with, e.g., gzip or bzip2. File must then be uncompressed with, e.g., gunzip or bunzip2 before netCDF readers [...]
- } /* endelse */
-
- ppc_lst=(kvmap_sct *)nco_malloc(NC_MAX_VARS*sizeof(kvmap_sct));
-
- /* Parse PPCs */
- for(idx=0;idx<ppc_nbr;idx++){
- if(!strstr(ppc_arg[idx],"=")){
- (void)fprintf(stdout,"%s: Invalid --ppc specification: %s\n",nco_prg_nm_get(),ppc_arg[idx]);
- if(ppc_lst) nco_kvmaps_free(ppc_lst);
- nco_exit(EXIT_FAILURE);
- } /* endif */
- kvm=nco_sng2map(ppc_arg[idx],kvm);
- if(kvm.key){
- char *items[BUFSIZ];
- int idxi;
- int item_nbr=nco_sng2array(",",kvm.key,items); /* multi-var specification */
- for(idxi=0;idxi<item_nbr;idxi++){ /* expand multi-var specification */
- ppc_lst[ippc].key=strdup(items[idxi]);
- ppc_lst[ippc].value=strdup(kvm.value);
- ippc++;
- } /* end for */
- } /* end if */
- } /* end for */
-
- /* PPC default exists, set all non-coordinate variables to default first */
- for(idx=0;idx<ippc;idx++){
- if(!strcasecmp(ppc_lst[idx].key,"default")){
- nco_ppc_set_dflt(nc_id,ppc_lst[idx].value,trv_tbl);
- break; /* only one default is needed */
- } /* endif */
- } /* end for */
-
- /* Set explicit, non-default PPCs that can overwrite default */
- for(idx=0;idx<ippc;idx++){
- if(!strcasecmp(ppc_lst[idx].key,"default")) continue;
- nco_ppc_set_var(ppc_lst[idx].key,ppc_lst[idx].value,trv_tbl);
- } /* end for */
-
- /* Unset PPC and flag for all variables with excessive PPC
- Operational definition of maximum PPC is maximum decimal precision of float/double = FLT_DIG/DBL_DIG = 7/15 */
- const int nco_max_ppc_dbl=15;
- const int nco_max_ppc_flt=7;
- /* Maximum digits for integers taken based on LONG_MAX ... from limits.h */
- const int nco_max_ppc_short=5;
- const int nco_max_ppc_ushort=5;
- const int nco_max_ppc_int=10;
- const int nco_max_ppc_uint=10;
- const int nco_max_ppc_int64=19;
- const int nco_max_ppc_uint64=20;
- int nco_max_ppc=int_CEWI;
-
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].ppc != NC_MAX_INT){
- switch(trv_tbl->lst[idx_tbl].var_typ){
- case NC_FLOAT: nco_max_ppc=nco_max_ppc_flt; break;
- case NC_DOUBLE: nco_max_ppc=nco_max_ppc_dbl; break;
- case NC_SHORT: nco_max_ppc=nco_max_ppc_short; break;
- case NC_USHORT: nco_max_ppc=nco_max_ppc_ushort; break;
- case NC_INT: nco_max_ppc=nco_max_ppc_int; break;
- case NC_UINT: nco_max_ppc=nco_max_ppc_uint; break;
- case NC_INT64: nco_max_ppc=nco_max_ppc_int64; break;
- case NC_UINT64: nco_max_ppc=nco_max_ppc_uint64; break;
- /* Do nothing for non-numeric types ...*/
- case NC_CHAR:
- case NC_BYTE:
- case NC_UBYTE:
- case NC_STRING: break;
- default:
- nco_dfl_case_nc_type_err();
- break;
- } /* end switch */
-
- switch(trv_tbl->lst[idx_tbl].var_typ){
- /* Floating point types */
- case NC_FLOAT:
- case NC_DOUBLE:
- if(trv_tbl->lst[idx_tbl].ppc > nco_max_ppc){
- if(trv_tbl->lst[idx_tbl].flg_nsd) (void)fprintf(stdout,"%s: INFO Number of Significant Digits (NSD) requested = %d too high for variable %s which is of type %s. No quantization or rounding will be performed for this variable. HINT: Maximum precisions for NC_FLOAT and NC_DOUBLE are %d and %d, respectively.\n",nco_prg_nm_get(),trv_tbl->lst[idx_tbl].ppc,trv_tbl->lst[idx_tbl].nm,nco_typ_sng(trv_tbl->lst[idx_tbl].var_typ),nco_max_ppc_flt,nco_max_ppc_dbl);
- trv_tbl->lst[idx_tbl].ppc=NC_MAX_INT;
- } /* endif */
- break;
- /* Integer types */
- case NC_SHORT:
- case NC_USHORT:
- case NC_INT:
- case NC_UINT:
- case NC_INT64:
- case NC_UINT64:
- if(
- /* ...rounding requested with NSD or ... */
- (trv_tbl->lst[idx_tbl].flg_nsd) ||
- /* ...more rounding requested with DSD than available or ... */
- (!trv_tbl->lst[idx_tbl].flg_nsd && (trv_tbl->lst[idx_tbl].ppc < -1*nco_max_ppc)) ||
- /* ...more precision requested than integers have or ... */
- (!trv_tbl->lst[idx_tbl].flg_nsd && (trv_tbl->lst[idx_tbl].ppc >= 0)) ||
- False)
- trv_tbl->lst[idx_tbl].ppc=NC_MAX_INT;
- break;
- case NC_CHAR: /* Do nothing for non-numeric types ...*/
- case NC_BYTE:
- case NC_UBYTE:
- case NC_STRING:
- trv_tbl->lst[idx_tbl].ppc=NC_MAX_INT;
- break;
- default:
- nco_dfl_case_nc_type_err();
- break;
- } /* end switch */
- /* For consistency reset flg_nsd as well */
- if(trv_tbl->lst[idx_tbl].ppc == NC_MAX_INT) trv_tbl->lst[idx_tbl].flg_nsd=True;
- } /* endif */
- } /* endfor */
-
- if(ppc_lst) nco_kvmaps_free(ppc_lst);
-} /* end nco_ppc_ini() */
-
-void
-nco_ppc_set_dflt /* Set PPC value for all non-coordinate variables for --ppc default */
-(const int nc_id, /* I [id] netCDF input file ID */
- const char * const ppc_arg, /* I [sng] User input for precision-preserving compression */
- trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
-{
- int ppc;
- char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- nco_bool flg_nsd=True; /* [flg] PPC is NSD */
-
- if(ppc_arg[0] == '.'){
- flg_nsd=False; /* DSD */
- ppc=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
- if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg+1L,"strtol",sng_cnv_rcd);
- }else{ /* NSD */
- ppc=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
- if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg,"strtol",sng_cnv_rcd);
- if(ppc <= 0){
- (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Default is specified as %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),ppc);
- nco_exit(EXIT_FAILURE);
- } /* endif */
- } /* end if */
-
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var && !trv_tbl->lst[idx_tbl].is_crd_var){
- /* Allow "default" to affect only floating point types */
- if(trv_tbl->lst[idx_tbl].var_typ == NC_FLOAT || trv_tbl->lst[idx_tbl].var_typ == NC_DOUBLE){
- /* Prevent "default" from applying to coordinate and bounds variables */
- int grp_id;
- int var_id;
- nco_inq_grp_full_ncid(nc_id,trv_tbl->lst[idx_tbl].grp_nm_fll,&grp_id);
- nco_inq_varid(grp_id,trv_tbl->lst[idx_tbl].nm,&var_id);
- if(!nco_is_spc_in_bnd_att(grp_id,var_id) && !nco_is_spc_in_crd_att(grp_id,var_id)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
- trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
- } /* endif */
- } /* endif */
- } /* endif */
- } /* endfor */
-} /* end nco_ppc_set_dflt() */
-
-void
-nco_ppc_set_var
-(const char * const var_nm, /* I [sng] Variable name to find */
- const char * const ppc_arg, /* I [sng] User input for precision-preserving compression */
- trv_tbl_sct * const trv_tbl) /* I/O [sct] Traversal table */
-{
- const char sls_chr='/'; /* [chr] Slash character */
- int mch_nbr=0;
- int ppc;
- char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
- nco_bool flg_nsd=True; /* [flg] PPC is NSD */
-
- if(ppc_arg[0] == '.'){ /* DSD */
- flg_nsd=False;
- ppc=(int)strtol(ppc_arg+1L,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
- if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg+1L,"strtol",sng_cnv_rcd);
- }else{ /* NSD */
- ppc=(int)strtol(ppc_arg,&sng_cnv_rcd,NCO_SNG_CNV_BASE10);
- if(*sng_cnv_rcd) nco_sng_cnv_err(ppc_arg,"strtol",sng_cnv_rcd);
- if(ppc <= 0){
- (void)fprintf(stdout,"%s ERROR Number of Significant Digits (NSD) must be postive. Specified value for %s is %d. HINT: Decimal Significant Digit (DSD) rounding does accept negative arguments (number of digits in front of the decimal point). However, the DSD argument must be prefixed by a period or \"dot\", e.g., \"--ppc foo=.-2\", to distinguish it from NSD quantization.\n",nco_prg_nm_get(),var_nm,ppc);
- nco_exit(EXIT_FAILURE);
- } /* endif */
- } /* end else */
-
- if(strpbrk(var_nm,".*^$\\[]()<>+?|{}")){ /* Regular expression ... */
-#ifdef NCO_HAVE_REGEX_FUNCTIONALITY
- regmatch_t *result;
- regex_t *rx;
- size_t rx_prn_sub_xpr_nbr;
- rx=(regex_t *)nco_malloc(sizeof(regex_t));
- if(strchr(var_nm,sls_chr)){ /* Full name is used */
- /* Important difference between full- and short-name matching: Prepend carat to RX so full name matches must start at beginning of variable name */
- char sng2mch[BUFSIZ]="^";
- strcat(sng2mch,var_nm);
- if(regcomp(rx,sng2mch,(REG_EXTENDED | REG_NEWLINE))){ /* Compile regular expression */
- (void)fprintf(stdout,"%s: ERROR trv_tbl_set_ppc() error in regular expression \"%s\"\n",nco_prg_nm_get(),var_nm);
- nco_exit(EXIT_FAILURE);
- } /* endif */
- rx_prn_sub_xpr_nbr=rx->re_nsub+1L; /* Number of parenthesized sub-expressions */
- result=(regmatch_t *)nco_malloc(sizeof(regmatch_t)*rx_prn_sub_xpr_nbr);
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
- if(!regexec(rx,trv_tbl->lst[idx_tbl].nm_fll,rx_prn_sub_xpr_nbr,result,0)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
- trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
- mch_nbr++;
- } /* endif */
- } /* endif */
- } /* endfor */
- }else{ /* Relative name is used */
- if(regcomp(rx,var_nm,(REG_EXTENDED | REG_NEWLINE))){ /* Compile regular expression */
- (void)fprintf(stdout,"%s: ERROR trv_tbl_set_ppc() error in regular expression \"%s\"\n",nco_prg_nm_get(),var_nm);
- nco_exit(EXIT_FAILURE);
- } /* endif */
- rx_prn_sub_xpr_nbr=rx->re_nsub+1L; /* Number of parenthesized sub-expressions */
- result=(regmatch_t *)nco_malloc(sizeof(regmatch_t)*rx_prn_sub_xpr_nbr);
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
- if(!regexec(rx,trv_tbl->lst[idx_tbl].nm,rx_prn_sub_xpr_nbr,result,0)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
- trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
- mch_nbr++;
- } /* endif */
- } /* endif */
- } /* endfor */
- } /* end Full name */
- regfree(rx); /* Free regular expression data structure */
- rx=(regex_t *)nco_free(rx);
- result=(regmatch_t *)nco_free(result);
-#else /* !NCO_HAVE_REGEX_FUNCTIONALITY */
- (void)fprintf(stdout,"%s: ERROR: Sorry, wildcarding (extended regular expression matches to variables) was not built into this NCO executable, so unable to compile regular expression \"%s\".\nHINT: Make sure libregex.a is on path and re-build NCO.\n",nco_prg_nm_get(),var_nm);
- nco_exit(EXIT_FAILURE);
-#endif /* !NCO_HAVE_REGEX_FUNCTIONALITY */
- }else if(strchr(var_nm,sls_chr)){ /* Full name */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
- if(!strcmp(var_nm,trv_tbl->lst[idx_tbl].nm_fll)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
- trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
- mch_nbr++;
- break; /* Only one match with full name */
- } /* endif */
- } /* endif */
- } /* endfor */
- }else{ /* Not full name so set all matching vars */
- for(unsigned idx_tbl=0;idx_tbl<trv_tbl->nbr;idx_tbl++){
- if(trv_tbl->lst[idx_tbl].nco_typ == nco_obj_typ_var){
- if(!strcmp(var_nm,trv_tbl->lst[idx_tbl].nm)){
- trv_tbl->lst[idx_tbl].ppc=ppc;
- trv_tbl->lst[idx_tbl].flg_nsd=flg_nsd;
- mch_nbr++;
- } /* endif */
- } /* endif */
- } /* endfor */
- } /* end Full name */
+ char *sng_line;
- if(mch_nbr == 0){
- (void)fprintf(stdout,"%s: ERROR nco_ppc_set_var() reports user specified variable (or, possibly, regular expression) = \"%s\" does not match any variables in input file\n",nco_prg_nm_get(),var_nm);
- nco_exit(EXIT_FAILURE);
- } /* endif */
-
- return;
-} /* end nco_ppc_set_var() */
-
-char *
-nco_sng_strip( /* [fnc] Strip leading and trailing white space */
-char *sng)
-{
- /* fxm: seems not working for \n??? */
- char *srt=sng;
- while(isspace(*srt)) srt++;
- int end=strlen(srt);
- if(srt != sng){
- memmove(sng,srt,end);
- sng[end]='\0';
- } /* endif */
- while(isblank(*(sng+end-1))) end--;
- sng[end]='\0';
- return sng;
-}/* end nco_sng_strip */
-
-int nco_sng2array(const char *dlm, const char *str, char **sarray)
-{
- int idx=0;
- char *tstr;
- tstr=strdup(str);
- sarray[idx]=strtok(tstr,dlm);
- while(sarray[idx]) sarray[++idx]=strtok(NULL,dlm);
- return idx;
-} /* end nco_sng2array */
-
-void nco_kvmaps_free(kvmap_sct *kvmaps)
-{
- int idx=0;
- while(kvmaps[idx].key){
- kvmaps[idx].key=(char *)nco_free(kvmaps[idx].key);
- kvmaps[idx].value=(char *)nco_free(kvmaps[idx].value);
- } /* end while */
- kvmaps=(kvmap_sct *)nco_free(kvmaps);
-} /* end nco_kvmaps_free */
-
-void nco_kvmap_prn(kvmap_sct vm)
-{
- if(!vm.key) return;
- (void)fprintf(stdout,"%s=",vm.key);
- (void)fprintf(stdout,"%s\n",vm.value);
-} /* end nco_kvmap_prn */
-
-int
-hdlscrip( /* return 0 invalid SCRIP file or rcd, 1 success */
-char *fl_nm_scrip, /* SCRIP file name with proper path */
-kvmap_sct *kvm_scrip)/* structure to hold contents of SCRIP file */
-{
- char line[BUFSIZ];
-
int icnt;
int idx=0;
- FILE *fl_scrip;
+ FILE *fp_scrip;
- fl_scrip=fopen(fl_nm_scrip,"r");
+ fp_scrip=fopen(fl_scrip,"r");
- if(!fl_scrip){
- fprintf(stderr,"Cannot open SCRIP file %s\n",fl_nm_scrip);
+ if(!fp_scrip){
+ (void)fprintf(stderr,"%s: ERROR Cannot open SCRIP file %s\n",nco_prg_nm_get(),fl_scrip);
return NCO_ERR;
} /* endif */
- while(fgets(line,sizeof(line),fl_scrip)){
- if(!strstr(line,"=")){
- fprintf(stderr,"invalid line in SCRIP file: %s\n", line);
- fclose(fl_scrip);
+ sng_line=(char *)nco_malloc(BUFSIZ*sizeof(char));
+ while(fgets(sng_line,sizeof(sng_line),fp_scrip)){
+ /* Each line must contain "=" */
+ if(!strstr(sng_line,"=")){
+ (void)fprintf(stderr,"%s: ERROR Invalid line in SCRIP file: %s\n",nco_prg_nm_get(),sng_line);
+ fclose(fp_scrip);
return NCO_ERR;
} /* endif */
- kvm_scrip[idx]=nco_sng2map(line,kvm_scrip[idx]);
+ kvm_scrip[idx]=nco_sng2kvm(sng_line,kvm_scrip[idx]);
if(!kvm_scrip[idx].key){
- fclose(fl_scrip);
+ fclose(fp_scrip);
return NCO_ERR;
}else{
idx++;
} /* end else */
} /* finish parsing SCRIP file */
- fclose(fl_scrip);
+ fclose(fp_scrip);
+ if(sng_line) sng_line=(char *)nco_free(sng_line);
- for(icnt=0;icnt<idx;icnt++) nco_kvmap_prn(kvm_scrip[icnt]);
+ for(icnt=0;icnt<idx;icnt++) nco_kvm_prn(kvm_scrip[icnt]);
return NCO_NOERR;
-} /* end hdlscrip */
-
-#if 0
-int
-nco_ESMF_Regrid(
-wgt,
-data_in,
-&data_out
-){
-// Given weights and data, do regridding
-ESMF_Regrid(wgt,data_in,data_);
-// write data_out
-}
-
-int
-nco_rgr_wgt_grd_mk();
-
-typedef struct{
-char *fl_grd_in;
-char *fl_grd_out;
-flg_1...;
-} rgr_wgt_sct;
-
-int
-nco_rgr_wgt_grd_mk(
-rgr_wgt_sct *rgr_wgt;
-){
-// Given grids, compute weights
-
-// NCO reads and checks inputs
-open(fl_grd_in);
-read lat_in,lon_in,lat_in_crn,... // nco_var_get
-
-// populate rgr_wgt
-
-nco_ESMF_RegridWeightGen(lat_in_crn,lon_in_crn,lat_out_crn,lon_out_crn,&wgt);
-
-// NCO writes output
-write wgt // nco_var_get
-
-}
-
-int
-nco_ESMF_RegridWeightGen(
-lat_in_crn,
-lon_in_crn,
-...
-){
-// Given grids, compute weights
-
-const char fnc_nm[]="nco_ESMF_RegridWeightGen()";
-int rcd=NC_NOERR;
-rcd=ESMF_RegridWeightGen(lat_in_crn,lon_in_crn,lat_out_crn,lon_out_crn,&wgt);
-if(rcd != NC_NOERR) nco_err_exit(rcd,fnc_nm);
-return rcd;
-
-// NCO writes output
-}
-#endif /* endif False */
+} /* end nco_scrip_read */
diff --git a/src/nco/nco_sld.h b/src/nco/nco_sld.h
index 8649b21..4ca8fd0 100644
--- a/src/nco/nco_sld.h
+++ b/src/nco/nco_sld.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sld.h,v 1.13 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* Purpose: Description (definition) of Swath-Like Data (SLD) functions */
@@ -14,10 +14,8 @@
#define NCO_SLD_H
/* Standard header files */
-#include <ctype.h> /* isalnum(), isdigit(), tolower() */
#include <stdio.h> /* stderr, FILE, NULL, printf */
#include <stdlib.h> /* atof, atoi, malloc, getopt */
-#include <string.h> /* strcmp() */
/* 3rd party vendors */
#include <netcdf.h> /* netCDF definitions and C library */
@@ -32,48 +30,10 @@
extern "C" {
#endif /* __cplusplus */
-typedef struct {
- char *key;
- char *value;
-} kvmap_sct;
-
-int hdlscrip(char *fl_nm_scrip, kvmap_sct *kvm_scrip);
-
-kvmap_sct nco_sng2map(char *str, kvmap_sct kvm); /* parse a line return a name-value pair kvmap */
-
-int nco_sng2array(const char *delim, const char *str, char **sarray); /* split str by delim to sarray returns size of sarray */
-
-char *nco_sng_strip(char *str); /* remove heading and trailing blanks */
-
-void nco_kvmaps_free(kvmap_sct *kvmaps); /* release memory */
-
-void nco_kvmap_prn(kvmap_sct kvm); /* print kvmap contents */
-
-void
-nco_ppc_ini /* [fnc] Set PPC based on user specifications */
-(const int nc_id, /* I [id] netCDF input file ID */
- int *dfl_lvl, /* O [enm] Deflate level */
- const int fl_out_fmt, /* I [enm] Output file format */
- char *const ppc_arg[], /* I [sng] List of user-specified ppc */
- const int ppc_nbr, /* I [nbr] Number of ppc specified */
- trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
-
-void
-nco_ppc_att_prc /* [fnc] create ppc att from trv_tbl */
-(const int nc_id, /* I [id] Input netCDF file ID */
- const trv_tbl_sct * const trv_tbl); /* I [sct] GTT (Group Traversal Table) */
-
-void
-nco_ppc_set_dflt /* Set the ppc value for all non-coordinate vars */
-(const int nc_id, /* I [id] netCDF input file ID */
- const char * const ppc_arg, /* I [sng] user input for precision-preserving compression */
- trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
-
-void
-nco_ppc_set_var
-(const char * const var_nm_fll, /* I [sng] Variable name to find */
- const char * const ppc_arg, /* I [sng] user input for precision-preserving compression */
- trv_tbl_sct * const trv_tbl); /* I/O [sct] Traversal table */
+ int /* O [rcd] Return code */
+ nco_scrip_read /* [fnc] Read, parse, and print contents of SCRIP file */
+ (char *fl_scrip, /* I [sng] SCRIP file name with proper path */
+ kvm_sct *kvm_scrip); /* I/O [sct] Structure to hold contents of SCRIP file */
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/src/nco/nco_sng_utl.c b/src/nco/nco_sng_utl.c
index e835e55..c6cdd7d 100644
--- a/src/nco/nco_sng_utl.c
+++ b/src/nco/nco_sng_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.c,v 1.83 2015/02/03 20:25:11 zender Exp $ */
+/* $Header$ */
/* Purpose: String utilities */
@@ -16,7 +16,11 @@ strcasecmp /* [fnc] Lexicographical case-insensitive string comparison */
const char * const sng_2) /* I [sng] Second string */
{
/* NB: Written by CSZ for clarity and type-safety, not speed nor POSIX conformance
- POSIX may require conversion to unsigned char before comparison */
+ POSIX may require conversion to unsigned char before comparison
+ StackOverflow:
+ strcasecmp(0 is not a C or C++ standard. It is defined by POSIX.1-2001 and 4.4BSD.
+ Assuming your system is POSIX or BSD compliant, you must #include <strings.h> */
+
/* Copy of (const) input strings */
char *sng_1_c;
char *sng_2_c;
@@ -596,3 +600,76 @@ sng_trm_trl_zro /* [fnc] Trim zeros trailing decimal point and preceding exponen
return;
} /* end sng_trm_trl_zro() */
+
+kvm_sct /* O [sct] Key-value pair */
+nco_sng2kvm /* [fnc] Parse string into key-value pair */
+(char *sng, /* I [sng] String to parse, including "=" */
+ kvm_sct kvm) /* O [sct] Key-value pair */
+{
+ /* Purpose: Convert string separated by single delimiter into two strings
+ Routine converts argument "--ppc key1,key2,...,keyN=val" into kvm.key="key1,key2,...keyN" and kvm.val=val
+ e.g., routine converts argument "--ppc one,two=3" into kvm.key="one,two" and kvm.val=3 */
+ char *tkn_sng;
+ const char dlm[]="="; /* [sng] Delimiter */
+
+ int arg_idx=0; /* [nbr] */
+
+ /* NB: Replace strtok() by strsep()? strtok() does not handle consecutive delimiters well */
+ tkn_sng=strtok(sng,dlm);
+ while(tkn_sng){
+ arg_idx++;
+ /* fxm: Whitespace-stripping may be unnecessary */
+ nco_sng_strip(tkn_sng);
+ switch(arg_idx){
+ case 1:
+ kvm.key=strdup(tkn_sng);
+ break;
+ case 2:
+ kvm.val=strdup(tkn_sng);
+ break;
+ default:
+ (void)fprintf(stderr,"nco_sng2kvm() cannot get key-value pair from input: %s\n",sng);
+ break;
+ }/* end switch */
+ tkn_sng=strtok(NULL,dlm);
+ }/* end while */
+ return kvm;
+} /* end nco_sng2kvm() */
+
+char * /* O [sng] Stripped-string */
+nco_sng_strip /* [fnc] Strip leading and trailing white space */
+(char *sng) /* I/O [sng] String to strip */
+{
+ /* fxm: seems not working for \n??? */
+ char *srt=sng;
+ while(isspace(*srt)) srt++;
+ size_t end=strlen(srt);
+ if(srt != sng){
+ memmove(sng,srt,end);
+ sng[end]='\0';
+ } /* endif */
+ while(isblank(*(sng+end-1L))) end--;
+ sng[end]='\0';
+ return sng;
+} /* end nco_sng_strip() */
+
+void
+nco_kvm_free /* [fnc] Relinquish dynamic memory from list of kvm structures */
+(kvm_sct *kvm) /* I/O [sct] List of kvm structures */
+{
+ /* Purpose: Relinquish dynamic memory from list of kvm structures
+ End of list is indicated by NULL in key slot */
+ int idx=0;
+ while(kvm[idx].key){
+ kvm[idx].key=(char *)nco_free(kvm[idx].key);
+ kvm[idx].val=(char *)nco_free(kvm[idx].val);
+ idx++;
+ } /* end while */
+ kvm=(kvm_sct *)nco_free(kvm);
+} /* end nco_kvm_free() */
+
+void
+nco_kvm_prn(kvm_sct kvm)
+{
+ if(kvm.key) (void)fprintf(stdout,"%s = %s\n",kvm.key,kvm.val); else return;
+} /* end nco_kvm_prn() */
diff --git a/src/nco/nco_sng_utl.h b/src/nco/nco_sng_utl.h
index 76636f1..08e3e43 100644
--- a/src/nco/nco_sng_utl.h
+++ b/src/nco/nco_sng_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_sng_utl.h,v 1.52 2015/02/03 20:25:11 zender Exp $ */
+/* $Header$ */
/* Purpose: String utilities */
@@ -46,85 +46,102 @@ extern "C" {
#endif /* __cplusplus */
#ifdef NEED_ISBLANK
-int /* O [flg] Character is a space or horizontal tab */
-isblank /* [fnc] Is character a space or horizontal tab? */
-(const int chr); /* I [enm] Character to check */
+ int /* O [flg] Character is a space or horizontal tab */
+ isblank /* [fnc] Is character a space or horizontal tab? */
+ (const int chr); /* I [enm] Character to check */
#endif /* !NEED_ISBLANK */
-
+
#ifdef NEED_STRCASECMP
-int /* O [enm] [-1,0,1] sng_1 [<,=,>] sng_2 */
-strcasecmp /* [fnc] Lexicographical case-insensitive string comparison */
-(const char * const sng_1, /* I [sng] First string */
- const char * const sng_2); /* I [sng] Second string */
-
-int /* O [enm] [-1,0,1] sng_1 [<,=,>] sng_2 */
-strncasecmp /* [fnc] Lexicographical case-insensitive string comparison */
-(const char * const sng_1, /* I [sng] First string */
- const char * const sng_2, /* I [sng] Second string */
- const size_t chr_nbr); /* I [nbr] Compare at most chr_nbr characters */
+ int /* O [enm] [-1,0,1] sng_1 [<,=,>] sng_2 */
+ strcasecmp /* [fnc] Lexicographical case-insensitive string comparison */
+ (const char * const sng_1, /* I [sng] First string */
+ const char * const sng_2); /* I [sng] Second string */
+
+ int /* O [enm] [-1,0,1] sng_1 [<,=,>] sng_2 */
+ strncasecmp /* [fnc] Lexicographical case-insensitive string comparison */
+ (const char * const sng_1, /* I [sng] First string */
+ const char * const sng_2, /* I [sng] Second string */
+ const size_t chr_nbr); /* I [nbr] Compare at most chr_nbr characters */
#endif /* !NEED_STRCASECMP */
-
-/* 20130827 GNU g++ always provides strcasestr(), MSVC never does */
+
+ /* 20130827 GNU g++ always provides strcasestr(), MSVC never does */
#ifndef __GNUG__
# ifdef NEED_STRCASESTR
-char * /* O [sng] Pointer to sng_2 in sng_1 */
-strcasestr /* [fnc] Lexicographical case-insensitive string search */
-(const char * const sng_1, /* I [sng] First string */
- const char * const sng_2); /* I [sng] Second string */
+ char * /* O [sng] Pointer to sng_2 in sng_1 */
+ strcasestr /* [fnc] Lexicographical case-insensitive string search */
+ (const char * const sng_1, /* I [sng] First string */
+ const char * const sng_2); /* I [sng] Second string */
# endif /* !NEED_STRCASESTR */
#endif /* __GNUG__ */
-
+
#ifdef NEED_STRDUP
-char * /* O [sng] Copy of input string */
-strdup /* [fnc] Duplicate string */
-(const char * const sng_in); /* I [sng] String to duplicate */
+ char * /* O [sng] Copy of input string */
+ strdup /* [fnc] Duplicate string */
+ (const char * const sng_in); /* I [sng] String to duplicate */
#endif /* !NEED_STRDUP */
-
+
#ifdef NEED_STRTOLL
-long long int /* O [nbr] String as long long integer */
-strtoll /* [fnc] Convert string to a long long integer */
-(const char * const nptr,
- char ** const endptr,
- const int base);
+ long long int /* O [nbr] String as long long integer */
+ strtoll /* [fnc] Convert string to a long long integer */
+ (const char * const nptr,
+ char ** const endptr,
+ const int base);
#endif /* !NEED_STRTOLL */
-
-char * /* O [sng] Parsed command line */
-nco_cmd_ln_sng /* [fnc] Re-construct command line from arguments */
-(const int argc, /* I [nbr] Argument count */
- CST_X_PTR_CST_PTR_CST_Y(char,argv)); /* I [sng] Command line argument values */
- /* char **argv); *//* I [sng] Command line argument values */
-
-char * /* O [sng] CDL-compatible name */
-nm2sng_cdl /* [fnc] Turn variable/dimension/attribute name into legal CDL */
-(const char * const nm_sng); /* I [sng] Name to CDL-ize */
-
-char * /* O [sng] CDL-compatible name */
-nm2sng_fl /* [fnc] Turn file name into legal string for shell commands */
-(const char * const nm_sng); /* I [sng] Name to sanitize */
-
-char * /* O [sng] String containing printable result */
-chr2sng_cdl /* [fnc] Translate C language character to printable, visible ASCII bytes */
-(const char chr_val, /* I [chr] Character to process */
- char * const val_sng); /* I/O [sng] String to stuff printable result into */
-
-char * /* O [sng] String containing printable result */
-chr2sng_xml /* [fnc] Translate C language character to printable, visible ASCII bytes */
-(const char chr_val, /* I [chr] Character to process */
- char * const val_sng); /* I/O [sng] String to stuff printable result into */
-
-int /* O [nbr] Number of escape sequences translated */
-sng_ascii_trn /* [fnc] Replace C language '\X' escape codes in string with ASCII bytes */
-(char * const sng); /* I/O [sng] String to process */
-
-void
-sng_idx_dlm_c2f /* [fnc] Replace brackets with parentheses in a string */
-(char *sng); /* [sng] String to change from C to Fortran notation */
-
-void /* O [nbr] */
-sng_trm_trl_zro /* [fnc] Trim zeros trailing decimal point and preceding exponent from floating point string */
-(char * const sng, /* I/O [sng] String to process */
- const int trl_zro_max); /* [nbr] Maximum number of trailing zeros allowed */
-
+
+ char * /* O [sng] Parsed command line */
+ nco_cmd_ln_sng /* [fnc] Re-construct command line from arguments */
+ (const int argc, /* I [nbr] Argument count */
+ CST_X_PTR_CST_PTR_CST_Y(char,argv)); /* I [sng] Command line argument values */
+ /* char **argv); *//* I [sng] Command line argument values */
+
+ char * /* O [sng] CDL-compatible name */
+ nm2sng_cdl /* [fnc] Turn variable/dimension/attribute name into legal CDL */
+ (const char * const nm_sng); /* I [sng] Name to CDL-ize */
+
+ char * /* O [sng] CDL-compatible name */
+ nm2sng_fl /* [fnc] Turn file name into legal string for shell commands */
+ (const char * const nm_sng); /* I [sng] Name to sanitize */
+
+ char * /* O [sng] String containing printable result */
+ chr2sng_cdl /* [fnc] Translate C language character to printable, visible ASCII bytes */
+ (const char chr_val, /* I [chr] Character to process */
+ char * const val_sng); /* I/O [sng] String to stuff printable result into */
+
+ char * /* O [sng] String containing printable result */
+ chr2sng_xml /* [fnc] Translate C language character to printable, visible ASCII bytes */
+ (const char chr_val, /* I [chr] Character to process */
+ char * const val_sng); /* I/O [sng] String to stuff printable result into */
+
+ int /* O [nbr] Number of escape sequences translated */
+ sng_ascii_trn /* [fnc] Replace C language '\X' escape codes in string with ASCII bytes */
+ (char * const sng); /* I/O [sng] String to process */
+
+ void
+ sng_idx_dlm_c2f /* [fnc] Replace brackets with parentheses in a string */
+ (char *sng); /* [sng] String to change from C to Fortran notation */
+
+ void /* O [nbr] */
+ sng_trm_trl_zro /* [fnc] Trim zeros trailing decimal point and preceding exponent from floating point string */
+ (char * const sng, /* I/O [sng] String to process */
+ const int trl_zro_max); /* [nbr] Maximum number of trailing zeros allowed */
+
+ kvm_sct /* O [sct] Key-value pair */
+ nco_sng2kvm /* [fnc] Parse string into key-value pair */
+ (char *sng, /* I [sng] String to parse, including "=" */
+ kvm_sct kvm); /* O [sct] Key-value pair */
+
+ char * /* O [sng] Stripped-string */
+ nco_sng_strip /* [fnc] Strip leading and trailing white space */
+ (char *sng); /* I/O [sng] String to strip */
+
+ void
+ nco_kvm_free /* [fnc] Relinquish dynamic memory from list of kvm structures */
+ (kvm_sct *kvm); /* I/O [sct] List of kvm structures */
+
+ void
+ nco_kvm_prn /* [fnc] Print kvm contents */
+ (kvm_sct kvm); /* [fnc] kvm to print */
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/src/nco/nco_srm.c b/src/nco/nco_srm.c
index 16adb1e..791e2a7 100644
--- a/src/nco/nco_srm.c
+++ b/src/nco/nco_srm.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_srm.c,v 1.4 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Streams */
diff --git a/src/nco/nco_srm.h b/src/nco/nco_srm.h
index 36aba94..ac79b0b 100644
--- a/src/nco/nco_srm.h
+++ b/src/nco/nco_srm.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_srm.h,v 1.4 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Streams */
diff --git a/src/nco/nco_typ.h b/src/nco/nco_typ.h
index 81a83d7..18b7256 100644
--- a/src/nco/nco_typ.h
+++ b/src/nco/nco_typ.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_typ.h,v 1.40 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Type definitions, opaque types */
diff --git a/src/nco/nco_var_avg.c b/src/nco/nco_var_avg.c
index 77604f6..8dfb558 100644
--- a/src/nco/nco_var_avg.c
+++ b/src/nco/nco_var_avg.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_avg.c,v 1.82 2015/02/07 04:39:39 zender Exp $ */
+/* $Header$ */
/* Purpose: Average variables */
diff --git a/src/nco/nco_var_avg.h b/src/nco/nco_var_avg.h
index 42180c5..ee324cd 100644
--- a/src/nco/nco_var_avg.h
+++ b/src/nco/nco_var_avg.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_avg.h,v 1.29 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Average variables */
diff --git a/src/nco/nco_var_lst.c b/src/nco/nco_var_lst.c
index 21ed789..8fbad7d 100644
--- a/src/nco/nco_var_lst.c
+++ b/src/nco/nco_var_lst.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_lst.c,v 1.171 2015/02/07 05:42:35 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable list utilities */
@@ -912,7 +912,9 @@ nco_var_lst_dvd /* [fnc] Divide input lists into output lists */
/* Many operators should not process coordinate variables, or auxiliary coordinate variables (lat, lon, time, latixy, longxy, ...) and bounds (lat_bnds, lon_bnds, ...)
20130112: As of today set is_crd_var true in nco_var_fll() when either of these conditions is true
so no longer need to specify these conditions separately.
+ 20150519: Add nco_is_spc_in_clm_att() to this list
Keep this old code here as a reminder that is_crd_var also incorporates these conditions
+ is_spc_in_clm_att=nco_is_spc_in_clm_att(var[idx]->nc_id,var[idx]->id);
is_spc_in_crd_att=nco_is_spc_in_crd_att(var[idx]->nc_id,var[idx]->id);
is_spc_in_bnd_att=nco_is_spc_in_bnd_att(var[idx]->nc_id,var[idx]->id); */
@@ -1077,10 +1079,10 @@ nco_var_lst_dvd /* [fnc] Divide input lists into output lists */
(void)fprintf(stdout,"%s: HINT Extraction list must contain a variable that shares at least one dimension with the re-order list\n",nco_prg_nm_get());
break;
case ncra:
- (void)fprintf(stdout,"%s: HINT Extraction list must contain a record variable that is not NC_CHAR or NC_STRING\n",nco_prg_nm_get());
+ (void)fprintf(stdout,"%s: HINT Extraction list must contain at least one record variable that is not NC_CHAR or NC_STRING. A record variable is a variable defined with a record dimension. Often the record dimension, aka unlimited dimension, refers to time. For more information on creating record dimensions within existing datasets, see http://nco.sf.net/nco.html#mk_rec_dmn\n",nco_prg_nm_get());
break;
case ncrcat:
- (void)fprintf(stdout,"%s: HINT Extraction list must contain a record variable which to concatenate\n",nco_prg_nm_get());
+ (void)fprintf(stdout,"%s: HINT Extraction list must contain a record variable which to concatenate. A record variable is a variable defined with a record dimension. Often the record dimension, aka unlimited dimension, refers to time. For more information on creating record dimensions within existing datasets, see http://nco.sf.net/nco.html#mk_rec_dmn\n",nco_prg_nm_get());
break;
case ncwa:
(void)fprintf(stdout,"%s: HINT Extraction list must contain a variable that contains an averaging dimension\n",nco_prg_nm_get());
@@ -1135,7 +1137,9 @@ nco_var_lst_dvd_trv /* [fnc] Divide input lists into ou
/* Many operators should not process coordinate variables, or auxiliary coordinate variables (lat, lon, time, latixy, longxy, ...) and bounds (lat_bnds, lon_bnds, ...)
20130112: As of today set is_crd_var true in nco_var_fll() when either of these conditions is true
so no longer need to specify these conditions separately.
+ 20150519: Add nco_is_spc_in_clm_att() to this list
Keep this old code here as a reminder that is_crd_var also incorporates these conditions
+ is_spc_in_clm_att=nco_is_spc_in_clm_att(var[idx]->nc_id,var[idx]->id);
is_spc_in_crd_att=nco_is_spc_in_crd_att(var[idx]->nc_id,var[idx]->id);
is_spc_in_bnd_att=nco_is_spc_in_bnd_att(var[idx]->nc_id,var[idx]->id); */
diff --git a/src/nco/nco_var_lst.h b/src/nco/nco_var_lst.h
index d4ced70..49cec7e 100644
--- a/src/nco/nco_var_lst.h
+++ b/src/nco/nco_var_lst.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_lst.h,v 1.77 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable list utilities */
diff --git a/src/nco/nco_var_rth.c b/src/nco/nco_var_rth.c
index 1ac2db9..788082c 100644
--- a/src/nco/nco_var_rth.c
+++ b/src/nco/nco_var_rth.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_rth.c,v 1.101 2015/02/16 23:33:52 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable arithmetic */
diff --git a/src/nco/nco_var_rth.h b/src/nco/nco_var_rth.h
index a0ea5e8..f51ac32 100644
--- a/src/nco/nco_var_rth.h
+++ b/src/nco/nco_var_rth.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_rth.h,v 1.47 2015/02/03 17:02:34 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable arithmetic */
diff --git a/src/nco/nco_var_scv.c b/src/nco/nco_var_scv.c
index 57e2116..a53e4dc 100644
--- a/src/nco/nco_var_scv.c
+++ b/src/nco/nco_var_scv.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_scv.c,v 1.42 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Arithmetic between variables and scalar values */
diff --git a/src/nco/nco_var_scv.h b/src/nco/nco_var_scv.h
index 18a835c..f1d4114 100644
--- a/src/nco/nco_var_scv.h
+++ b/src/nco/nco_var_scv.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_scv.h,v 1.31 2014/12/31 01:50:07 zender Exp $ */
+/* $Header$ */
/* Purpose: Arithmetic between variables and scalar values */
diff --git a/src/nco/nco_var_utl.c b/src/nco/nco_var_utl.c
index 6289ff7..28bd3a7 100644
--- a/src/nco/nco_var_utl.c
+++ b/src/nco/nco_var_utl.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_utl.c,v 1.373 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable utilities */
@@ -80,7 +80,7 @@ nco_cpy_var_val /* [fnc] Copy variable from input to output file, no limits */
} /* end loop over dim */
/* Allocate enough space to hold variable */
- void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hypserslab from input to output file",fnc_nm);
+ void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hyperslab from input to output file",fnc_nm);
/* 20150114: Keep PPC code in single block for easier reuse */
int ppc=NC_MAX_INT; /* [nbr] Precision-preserving compression, i.e., number of total or decimal significant digits */
@@ -94,7 +94,7 @@ nco_cpy_var_val /* [fnc] Copy variable from input to output file, no limits */
var_nm_fll=nco_gid_var_nm_2_var_nm_fll(in_id,var_nm);
// 20150115 fxm: hash table broken---use brute force
var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl);
- //(void)fprintf(stderr,"nco_cpy_rec_var_val reports var_nm_fll = %s, var_trv->var_nm_fll = %s\n",var_nm_fll,var_trv->nm_fll);
+ //(void)fprintf(stderr,"%s reports var_nm_fll = %s, var_trv->var_nm_fll = %s\n",fnc_nm,var_nm_fll,var_trv->nm_fll);
assert(var_trv != NULL);
if(var_trv) ppc=var_trv->ppc;
if(var_trv) flg_nsd=var_trv->flg_nsd;
@@ -271,14 +271,20 @@ nco_use_mm3_workaround /* [fnc] Use faster copy on Multi-record Multi-variable n
/* No advantage to workaround unless reading from or writing to netCDF3 file */
if(
(fl_out_fmt == NC_FORMAT_CLASSIC || fl_out_fmt == NC_FORMAT_64BIT) || /* Cases 1 & 2 above, i.e., MM3->MM3 & MM4->MM3 */
- ((fl_in_fmt == NC_FORMAT_CLASSIC || fl_in_fmt == NC_FORMAT_64BIT) && /* Case 3 above, i.e., MM3->MM4 */
- (fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC)) ||
+ /* 20150515: Investigating an unusually sluggish response to compressing one of Gary Strand's netCDF3 files,
+ I learned that the MM3 workaround in combination with odd chunk sizes (like map=rew produces),
+ explain most or all of the sluggishness.
+ Executive decision: turn-off MM3 workaround when in Case 3 above (MM3->MM4 copying)
+ This speeds-up compression-induced chunking for users converting large netCDF3 files to netCDF4
+ To restore MM3 workaround for Case 3, uncomment next two lines */
+ // ((fl_in_fmt == NC_FORMAT_CLASSIC || fl_in_fmt == NC_FORMAT_64BIT) && /* Case 3 above, i.e., MM3->MM4 */
+ // (fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC)) ||
False)
{
/* Subsequently, assume output is netCDF3 or classic-compatible netCDF4
- If file contains record dimension (and netCDF3 files can have only one record dimension)
- NB: fxm Following check only detects cases where MM3 conditions exist root group (not sub-groups)
- Copying MM3-worthy subgroup from netCDF4 file to netCDF3 flat file produces false-negative */
+ If file contains record dimension (and netCDF3 files can have only one record dimension)
+ NB: fxm Following check only detects cases where MM3 conditions exist root group (not sub-groups)
+ Copying MM3-worthy subgroup from netCDF4 file to netCDF3 flat file produces false-negative */
rcd=nco_inq_unlimdim(in_id,&rec_dmn_id);
if(rec_dmn_id != NCO_REC_DMN_UNDEFINED){
/* Slowdown only occurs in files with more than one record variable */
@@ -366,6 +372,7 @@ nco_cpy_rec_var_val /* [fnc] Copy all record variables, record-by-record, from i
/* Mimic standard code path debugging information */
if(nco_dbg_lvl_get() >= nco_dbg_var && !fp_bnr && rec_idx == 0) (void)fprintf(stderr,"%s, ",var_lst[var_idx]->nm);
if(nco_dbg_lvl_get() >= nco_dbg_var && rec_idx == 0) (void)fflush(stderr);
+ if(nco_dbg_lvl_get() >= nco_dbg_crr) (void)fprintf(stderr,".");
/* Get ID of requested variable from both files */
(void)nco_inq_varid(var_lst[var_idx]->grp_id_in,var_lst[var_idx]->nm,&var_in_id);
@@ -400,7 +407,7 @@ nco_cpy_rec_var_val /* [fnc] Copy all record variables, record-by-record, from i
dmn_srt[0]=rec_idx;
/* Allocate enough space to hold one record of this variable */
- void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hypserslab from input to output file",fnc_nm);
+ void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hyperslab from input to output file",fnc_nm);
/* 20150114: Keep PPC code in single block for easier reuse */
int ppc=NC_MAX_INT; /* [nbr] Precision-preserving compression, i.e., number of total or decimal significant digits */
@@ -414,7 +421,7 @@ nco_cpy_rec_var_val /* [fnc] Copy all record variables, record-by-record, from i
var_nm_fll=nco_gid_var_nm_2_var_nm_fll(var_lst[var_idx]->grp_id_in,var_lst[var_idx]->nm);
// 20150115 fxm: hash table broken---use brute force
var_trv=trv_tbl_var_nm_fll(var_nm_fll,trv_tbl);
- //(void)fprintf(stderr,"nco_cpy_rec_var_val reports var_nm_fll = %s, var_trv->var_nm_fll = %s\n",var_nm_fll,var_trv->nm_fll);
+ //(void)fprintf(stderr,"%s reports var_nm_fll = %s, var_trv->var_nm_fll = %s\n",fnc_nm,var_nm_fll,var_trv->nm_fll);
assert(var_trv != NULL);
if(var_trv) ppc=var_trv->ppc;
if(var_trv) flg_nsd=var_trv->flg_nsd;
@@ -621,7 +628,7 @@ nco_cpy_var_val_lmt /* [fnc] Copy variable data from input to output file, simpl
} /* end loop over dim */
/* Allocate enough space to hold variable */
- void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hypserslab from input to output file",fnc_nm);
+ void_ptr=(void *)nco_malloc_dbg(var_sz*nco_typ_lng(var_typ),"Unable to malloc() value buffer when copying hyperslab from input to output file",fnc_nm);
/* Copy variable */
if(dmn_nbr == 0){ /* Copy scalar */
@@ -1075,7 +1082,7 @@ var_dfl_set /* [fnc] Set defaults for each member of variable structure */
var->undefined=False; /* [flg] Used by ncap parser */
var->is_fix_var=True; /* Is this a fixed (non-processed) variable? */
var->dfl_lvl=NCO_DFL_LVL_UNDEFINED; /* [enm] Deflate level */
- var->shuffle=False; /* [flg] Turn on shuffle filter */
+ var->shuffle=NC_NOSHUFFLE; /* [flg] Turn on shuffle filter */
/* Members related to packing */
var->has_scl_fct=False; /* [flg] Valid scale_factor attribute exists */
var->has_add_fst=False; /* [flg] Valid add_offset attribute exists */
@@ -1217,11 +1224,14 @@ nco_var_dfn /* [fnc] Define variables and write their attributes to output file
rcd=nco_inq_var_deflate(in_id,var_in_id,&shuffle,&deflate,&dfl_lvl_in);
/* Copy original deflation settings */
if(deflate || shuffle) (void)nco_def_var_deflate(out_id,var[idx]->id,deflate,shuffle,dfl_lvl_in);
- } /* endif */
+ }else{
+ /* Shuffle never, to my knowledge, increases filesize, so shuffle by default when manually deflating */
+ shuffle=NC_SHUFFLE;
+ } /* endelse */
/* Overwrite HDF Lempel-Ziv compression level, if requested */
if(dfl_lvl == 0) deflate=(int)False; else deflate=(int)True;
/* Turn-off shuffle when uncompressing otherwise chunking requests may fail */
- if(dfl_lvl == 0) shuffle=(int)False;
+ if(dfl_lvl == 0) shuffle=NC_NOSHUFFLE;
if(dfl_lvl >= 0) (void)nco_def_var_deflate(out_id,var[idx]->id,shuffle,deflate,dfl_lvl);
} /* endif */
} /* endif netCDF4 */
@@ -1508,6 +1518,80 @@ nco_is_spc_in_bnd_att /* [fnc] Variable is listed in a "bounds" attribute */
return IS_SPC_IN_BND_ATT; /* [flg] Variable is listed in a "bounds" attribute */
} /* end nco_is_spc_in_bnd_att() */
+nco_bool /* [flg] Variable is listed in a "climatology" attribute */
+nco_is_spc_in_clm_att /* [fnc] Variable is listed in a "climatology" attribute */
+(const int nc_id, /* I [id] netCDF file ID */
+ const int var_trg_id) /* I [id] Variable ID */
+{
+ /* Purpose: Is variable specified in a "climatology" attribute?
+ Typical variables that appear in a "climatology" attribute include "lat_bnds", "lon_bnds", etc.
+ Such variables may be "multi-dimensional coordinates" that should
+ undergo special treatment by arithmetic operators.
+ Routine based on nco_is_spc_in_crd_att() */
+ nco_bool IS_SPC_IN_CLM_ATT=False; /* [flg] Variable is listed in a "climatology" attribute */
+
+ const char dlm_sng[]=" "; /* [sng] Delimiter string */
+ const char fnc_nm[]="nco_is_spc_in_clm_att()"; /* [sng] Function name */
+ char **clm_lst; /* [sng] 1D array of list elements */
+ char *att_val;
+ char att_nm[NC_MAX_NAME];
+ char var_nm[NC_MAX_NAME];
+ char var_trg_nm[NC_MAX_NAME];
+ int idx_att;
+ int idx_clm;
+ int idx_var;
+ int nbr_att;
+ int nbr_clm; /* [nbr] Number of coordinates specified in "climatology" attribute */
+ int nbr_var; /* [nbr] Number of variables in file */
+ int rcd=NC_NOERR; /* [rcd] Return code */
+ int var_id; /* [id] Variable ID */
+ long att_sz;
+ nc_type att_typ;
+
+ /* May need variable name for later comparison to "climatology" attribute */
+ rcd+=nco_inq_varname(nc_id,var_trg_id,var_trg_nm);
+ rcd+=nco_inq_nvars(nc_id,&nbr_var);
+
+ for(idx_var=0;idx_var<nbr_var;idx_var++){
+ /* This assumption, praise the Lord, is valid in netCDF2, netCDF3, and netCDF4 */
+ var_id=idx_var;
+
+ /* Find number of attributes */
+ rcd+=nco_inq_varnatts(nc_id,var_id,&nbr_att);
+ for(idx_att=0;idx_att<nbr_att;idx_att++){
+ rcd+=nco_inq_attname(nc_id,var_id,idx_att,att_nm);
+ /* Is attribute part of CF convention? */
+ if(!strcmp(att_nm,"climatology")){
+ /* Yes, get list of specified attributes */
+ rcd+=nco_inq_att(nc_id,var_id,att_nm,&att_typ,&att_sz);
+ if(att_typ != NC_CHAR){
+ rcd=nco_inq_varname(nc_id,var_id,var_nm);
+ (void)fprintf(stderr,"%s: WARNING the \"%s\" attribute for variable %s is type %s, not %s. This violates the CF convention for specifying additional attributes. Therefore %s will skip this attribute.\n",nco_prg_nm_get(),att_nm,var_nm,nco_typ_sng(att_typ),nco_typ_sng(NC_CHAR),fnc_nm);
+ return IS_SPC_IN_CLM_ATT;
+ } /* end if */
+ att_val=(char *)nco_malloc((att_sz+1L)*sizeof(char));
+ if(att_sz > 0) rcd=nco_get_att(nc_id,var_id,att_nm,(void *)att_val,NC_CHAR);
+ /* NUL-terminate attribute */
+ att_val[att_sz]='\0';
+ /* Split list into separate coordinate names
+ Use nco_lst_prs_sgl_2D() not nco_lst_prs_2D() to avert TODO nco944 */
+ clm_lst=nco_lst_prs_sgl_2D(att_val,dlm_sng,&nbr_clm);
+ /* ...for each coordinate in "climatology" attribute... */
+ for(idx_clm=0;idx_clm<nbr_clm;idx_clm++){
+ /* Does variable match name specified in coordinate list? */
+ if(!strcmp(var_trg_nm,clm_lst[idx_clm])) break;
+ } /* end loop over coordinates in list */
+ if(idx_clm!=nbr_clm) IS_SPC_IN_CLM_ATT=True;
+ /* Free allocated memory */
+ att_val=(char *)nco_free(att_val);
+ clm_lst=nco_sng_lst_free(clm_lst,nbr_clm);
+ } /* !coordinates */
+ } /* end loop over attributes */
+ } /* end loop over idx_var */
+
+ return IS_SPC_IN_CLM_ATT; /* [flg] Variable is listed in a "climatology" attribute */
+} /* end nco_is_spc_in_clm_att() */
+
void
nco_var_mtd_refresh /* [fnc] Update variable metadata (dmn_nbr, ID, mss_val, type) */
(const int nc_id, /* I [id] netCDF input-file ID */
@@ -1532,7 +1616,7 @@ nco_var_mtd_refresh /* [fnc] Update variable metadata (dmn_nbr, ID, mss_val, typ
var->nc_id=nc_id;
/* 20050519: Not sure why I originally made next four lines SMP-critical
- 20050629: Making next four lines multi-threaded causes no problems */
+ 20050629: Making next four lines multi-threaded causes no problems */
/* Refresh variable ID first */
rcd+=nco_inq_varid(var->nc_id,var->nm,&var->id);
@@ -1627,7 +1711,7 @@ nco_var_dmn_refresh /* [fnc] Refresh var hyperslab info with var->dim[] info */
var_tmp->sz=sz;
var_tmp->sz_rec=sz_rec;
} /* end loop over variables */
-
+
} /* end nco_var_dmn_refresh() */
var_sct * /* O [sct] Variable structure */
@@ -1640,34 +1724,34 @@ nco_var_fll /* [fnc] Allocate variable structure and fill with metadata */
{
/* Purpose: nco_malloc() and return a completed var_sct */
char dmn_nm[NC_MAX_NAME];
-
+
int fl_fmt;
int dmn_idx;
int idx;
int rec_dmn_id;
-
+
var_sct *var;
-
+
/* Get file format */
(void)nco_inq_format(nc_id,&fl_fmt);
-
+
/* Get record dimension ID */
(void)nco_inq(nc_id,(int *)NULL,(int *)NULL,(int *)NULL,&rec_dmn_id);
-
+
/* Allocate space for variable structure */
var=(var_sct *)nco_malloc(sizeof(var_sct));
(void)var_dfl_set(var); /* [fnc] Set defaults for each member of variable structure */
-
+
/* Fill-in known fields */
/* Make sure var_free() frees names when variable is destroyed */
var->nm_fll=NULL;
var->nm=(char *)strdup(var_nm);
var->id=var_id;
var->nc_id=nc_id;
-
+
/* Get type and number of dimensions and attributes for variable */
(void)nco_inq_var(var->nc_id,var->id,(char *)NULL,&var->typ_dsk,&var->nbr_dim,(int *)NULL,&var->nbr_att);
-
+
/* Allocate space for dimension information */
if(var->nbr_dim > 0) var->dim=(dmn_sct **)nco_malloc(var->nbr_dim*sizeof(dmn_sct *)); else var->dim=(dmn_sct **)NULL;
if(var->nbr_dim > 0) var->dmn_id=(int *)nco_malloc(var->nbr_dim*sizeof(int)); else var->dmn_id=(int *)NULL;
@@ -1676,10 +1760,10 @@ nco_var_fll /* [fnc] Allocate variable structure and fill with metadata */
if(var->nbr_dim > 0) var->srt=(long *)nco_malloc(var->nbr_dim*sizeof(long)); else var->srt=(long *)NULL;
if(var->nbr_dim > 0) var->end=(long *)nco_malloc(var->nbr_dim*sizeof(long)); else var->end=(long *)NULL;
if(var->nbr_dim > 0) var->srd=(long *)nco_malloc(var->nbr_dim*sizeof(long)); else var->srd=(long *)NULL;
-
+
/* Get dimension IDs from input file */
(void)nco_inq_vardimid(var->nc_id,var->id,var->dmn_id);
-
+
/* Type in memory begins as same type as on disk */
var->type=var->typ_dsk; /* [enm] Type of variable in RAM */
/* Type of packed data on disk */
@@ -1719,47 +1803,48 @@ nco_var_fll /* [fnc] Allocate variable structure and fill with metadata */
/* fxm: hmb, what is this for? */
/* Re-define dmn_id so that if dim is dimension list from output file
- then we get correct dmn_id. Should not affect normal running of
- routine as usually dim is dimension list from input file */
+ then we get correct dmn_id. Should not affect normal running of
+ routine as usually dim is dimension list from input file */
var->dmn_id[idx]=dim[dmn_idx]->id;
-
+
var->dim[idx]=dim[dmn_idx];
var->cnt[idx]=dim[dmn_idx]->cnt;
var->srt[idx]=dim[dmn_idx]->srt;
var->end[idx]=dim[dmn_idx]->end;
var->srd[idx]=dim[dmn_idx]->srd;
-
+
if(var->dmn_id[idx] == rec_dmn_id) var->is_rec_var=True; else var->sz_rec*=var->cnt[idx];
-
+
/* NB: dim[idx]->cid will be uninitialized unless dim[idx] is a coordinate
- Hence divide this into to sequential if statements so valgrind does not
- complain about relying on uninitialized values */
+ Hence divide this into to sequential if statements so valgrind does not
+ complain about relying on uninitialized values */
if(var->dim[idx]->is_crd_dmn){
if(var->id == var->dim[idx]->cid){
var->is_crd_var=True;
var->cid=var->dmn_id[idx];
} /* end if */
} /* end if */
-
+
/* NB: This assumes default var->sz begins as 1 */
var->sz*=var->cnt[idx];
} /* end loop over dim */
-
- /* 20130112: Variables associated with "bounds" and "coordinates" attributes should,
- in most cases, be treated as coordinates */
+
+ /* 20130112: Variables associated with "bounds", "climatology", and "coordinates" attributes should,
+ in most cases, be treated as coordinates */
if(nco_is_spc_in_bnd_att(var->nc_id,var->id)) var->is_crd_var=True;
+ if(nco_is_spc_in_clm_att(var->nc_id,var->id)) var->is_crd_var=True;
if(nco_is_spc_in_crd_att(var->nc_id,var->id)) var->is_crd_var=True;
-
+
/* Portions of variable structure depend on packing properties, e.g., typ_upk
- nco_pck_dsk_inq() fills in these portions harmlessly */
+ nco_pck_dsk_inq() fills in these portions harmlessly */
(void)nco_pck_dsk_inq(nc_id,var);
-
+
/* Set deflate and chunking to defaults */
var->dfl_lvl=NCO_DFL_LVL_UNDEFINED; /* [enm] Deflate level */
- var->shuffle=False; /* [flg] Turn on shuffle filter */
-
+ var->shuffle=NC_NOSHUFFLE; /* [flg] Turn on shuffle filter */
+
for(idx=0;idx<var->nbr_dim;idx++) var->cnk_sz[idx]=(size_t)0L;
-
+
/* Read deflate levels and chunking (if any) */
if(fl_fmt == NC_FORMAT_NETCDF4 || fl_fmt == NC_FORMAT_NETCDF4_CLASSIC){
int deflate; /* [enm] Deflate filter is on */
diff --git a/src/nco/nco_var_utl.h b/src/nco/nco_var_utl.h
index cdb2d9e..240721e 100644
--- a/src/nco/nco_var_utl.h
+++ b/src/nco/nco_var_utl.h
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/nco_var_utl.h,v 1.106 2015/01/15 07:23:42 zender Exp $ */
+/* $Header$ */
/* Purpose: Variable utilities */
@@ -123,6 +123,11 @@ extern "C" {
(const int nc_id, /* I [id] netCDF file ID */
const int var_trg_id); /* I [id] Variable ID */
+ nco_bool /* [flg] Variable is listed in a "climatology" attribute */
+ nco_is_spc_in_clm_att /* [fnc] Variable is listed in a "climatology" attribute */
+ (const int nc_id, /* I [id] netCDF file ID */
+ const int var_trg_id); /* I [id] Variable ID */
+
nco_bool /* [flg] Variable is listed in a "coordinates" attribute */
nco_is_spc_in_crd_att /* [fnc] Variable is listed in a "coordinates" attribute */
(const int nc_id, /* I [id] netCDF file ID */
diff --git a/src/nco/ncpdq.c b/src/nco/ncpdq.c
index 7432d47..e6de8ea 100644
--- a/src/nco/ncpdq.c
+++ b/src/nco/ncpdq.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncpdq.c,v 1.424 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncpdq -- netCDF pack, re-dimension, query */
@@ -138,8 +138,8 @@ main(int argc,char **argv)
char scl_fct_sng[]="scale_factor"; /* [sng] Unidata standard string for scale factor */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncpdq.c,v 1.424 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.424 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467Aa:CcD:d:Fg:G:hL:l:M:Oo:P:p:Rrt:v:UxZ-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -663,7 +663,7 @@ main(int argc,char **argv)
/* Create list of dimensions to average(ncwa)/re-order(ncpdq) */
if(IS_REORDER) (void)nco_dmn_avg_mk(in_id,dmn_rdr_lst_in,dmn_rdr_nbr_in,flg_dmn_prc_usr_spc,False,trv_tbl,&dmn_rdr,&dmn_rdr_nbr);
- /* Fill-in variable structure list for all extracted variables. NOTE: Using GTT version */
+ /* Fill-in variable structure list for all extracted variables */
var=nco_fll_var_trv(in_id,&xtr_nbr,trv_tbl);
/* Duplicate to output array */
@@ -691,7 +691,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -701,7 +701,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Catenate time-stamped command line to "history" global attribute */
if(HISTORY_APPEND) (void)nco_hst_att_cat(out_id,cmd_ln);
diff --git a/src/nco/ncra.c b/src/nco/ncra.c
index 01da786..9c3c7c2 100644
--- a/src/nco/ncra.c
+++ b/src/nco/ncra.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncra.c,v 1.562 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* This single source file compiles into three separate executables:
ncra -- netCDF record averager
@@ -32,7 +32,7 @@
University of California, Irvine
Irvine, CA 92697-3100 */
-/* URL: http://nco.cvs.sf.net/nco/nco/src/nco/ncra.c
+/* URL: https://github.com/czender/nco/tree/master/src/nco/ncra.c
Usage:
ncra -O -n 3,4,1 -p ${HOME}/nco/data h0001.nc ~/foo.nc
@@ -41,6 +41,8 @@
ncrcat -O -C -d time,0,5,4,2 -v time -p ~/nco/data in.nc ~/foo.nc
ncra -O -C -d time,0,5,4,2 -v time -p ~/nco/data in.nc ~/foo.nc
ncra -O -C --mro -d time,0,5,4,2 -v time -p ~/nco/data in.nc ~/foo.nc
+ ncra -O -w 1,2,3 -n 3,4,1 -p ${HOME}/nco/data h0001.nc ~/foo.nc
+ ncra -O -w one_dmn_rec_var -n 3,4,1 -p ${HOME}/nco/data h0001.nc ~/foo.nc
scp ~/nco/src/nco/ncra.c esmf.ess.uci.edu:nco/src/nco
@@ -120,6 +122,7 @@ main(int argc,char **argv)
char **fl_lst_in;
char **grp_lst_in=NULL_CEWI;
char **var_lst_in=NULL_CEWI;
+ char **wgt_lst_in=NULL_CEWI;
char *aux_arg[NC_MAX_DIMS];
char *cmd_ln;
char *cnk_arg[NC_MAX_DIMS];
@@ -139,11 +142,12 @@ main(int argc,char **argv)
char *optarg_lcl=NULL; /* [sng] Local copy of system optarg */
char *ppc_arg[NC_MAX_VARS]; /* [sng] PPC arguments */
char *sng_cnv_rcd=NULL_CEWI; /* [sng] strtol()/strtoul() return code */
+ char *wgt_nm=NULL_CEWI; /* [sng] Weight variable */
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncra.c,v 1.562 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.562 $";
- const char * const opt_sht_lst="3467ACcD:d:FG:g:HhL:l:n:Oo:p:P:rRt:v:X:xY:y:-:";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
+ const char * const opt_sht_lst="3467ACcD:d:FG:g:HhL:l:n:Oo:p:P:rRt:v:w:X:xY:y:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -157,6 +161,9 @@ main(int argc,char **argv)
dmn_sct **dim=NULL; /* CEWI */
dmn_sct **dmn_out=NULL; /* CEWI */
+ double *wgt_arr=NULL; /* Option w */
+ double wgt_avg_scl=0.0; /* [frc] Average of weights */
+
extern char *optarg;
extern int optind;
@@ -207,9 +214,12 @@ main(int argc,char **argv)
int thr_idx; /* [idx] Index of current thread */
int thr_nbr=int_CEWI; /* [nbr] Thread number Option t */
int var_lst_in_nbr=0;
- int var_out_id; /* [ID] Variable ID (output) */
+ int var_out_id; /* [ID] Variable ID (output) */
+ int wgt_nbr=0;
int xtr_nbr=0; /* xtr_nbr won't otherwise be set for -c with no -v */
+ lmt_sct **lmt_rec=NULL; /* [lst] (ncra) Record dimensions */
+
long idx_rec_crr_in; /* [idx] Index of current record in current input file */
long *idx_rec_out=NULL; /* [idx] Index of current record in output file (0 is first, ...) */
long *rec_in_cml=NULL; /* [nbr] Number of records, read or not, in all processed files */
@@ -251,31 +261,35 @@ main(int argc,char **argv)
nco_bool flg_skp1; /* [flg] Current record is not dimension of this variable */
nco_bool flg_skp2; /* [flg] Current record is not dimension of this variable */
+ nco_dmn_dne_t *flg_dne=NULL; /* [lst] Flag to check if input dimension -d "does not exist" */
+
nco_int base_time_srt=nco_int_CEWI;
nco_int base_time_crr=nco_int_CEWI;
nc_type var_prc_typ_pre_prm=NC_NAT; /* [enm] Type of variable before promotion */
+ scv_sct wgt_scv;
+ scv_sct wgt_avg_scv;
+
size_t bfr_sz_hnt=NC_SIZEHINT_DEFAULT; /* [B] Buffer size hint */
size_t cnk_min_byt=NCO_CNK_SZ_MIN_BYT_DFL; /* [B] Minimize size of variable to chunk */
size_t cnk_sz_byt=0UL; /* [B] Chunk size in bytes */
size_t cnk_sz_scl=0UL; /* [nbr] Chunk size scalar */
size_t hdr_pad=0UL; /* [B] Pad at end of header section */
+ trv_sct *var_trv; /* [sct] Variable GTT object */
+
+ trv_tbl_sct *trv_tbl; /* [lst] Traversal table */
+
var_sct **var;
var_sct **var_fix;
var_sct **var_fix_out;
var_sct **var_out=NULL_CEWI;
var_sct **var_prc;
var_sct **var_prc_out;
-
- trv_sct *var_trv; /* [sct] Variable GTT object */
-
- trv_tbl_sct *trv_tbl; /* [lst] Traversal table */
-
- nco_dmn_dne_t *flg_dne=NULL; /* [lst] Flag to check if input dimension -d "does not exist" */
-
- lmt_sct **lmt_rec=NULL; /* [lst] (ncra) Record dimensions */
+ var_sct *wgt=NULL;
+ var_sct *wgt_out=NULL;
+ var_sct *wgt_avg=NULL;
#ifdef ENABLE_MPI
/* Declare all MPI-specific variables here */
@@ -384,6 +398,8 @@ main(int argc,char **argv)
{"threads",required_argument,0,'t'},
{"omp_num_threads",required_argument,0,'t'},
{"variable",required_argument,0,'v'},
+ {"wgt",required_argument,0,'w'},
+ {"weight",required_argument,0,'w'},
{"auxiliary",required_argument,0,'X'},
{"exclude",no_argument,0,'x'},
{"xcl",no_argument,0,'x'},
@@ -616,6 +632,27 @@ main(int argc,char **argv)
optarg_lcl=(char *)nco_free(optarg_lcl);
xtr_nbr=var_lst_in_nbr;
break;
+ case 'w': /* Per-file and per-record weights */
+ if(isalpha(optarg[0])){
+ wgt_nm=(char *)strdup(optarg);
+ // (void)fprintf(stderr,"%s: WARNING The \"-w weight_name\" feature is still buggy and this switch is intended only for developers\n",nco_prg_nm);
+ (void)fprintf(stderr,"%s: WARNING The \"-w weight_name\" feature is still buggy and this option is intended only for developers. The \"-w weight_array\" option works fine, e.g., \"-w 31,31,28\". If you are very interested in the weight_name functionality, start a thread on SourceForge and we will update the status of that option there.\n",nco_prg_nm);
+ nco_exit(EXIT_FAILURE);
+ }else{ /* !wgt_nm */
+ optarg_lcl=(char *)strdup(optarg);
+ wgt_lst_in=nco_lst_prs_2D(optarg_lcl,",",&wgt_nbr);
+ optarg_lcl=(char *)nco_free(optarg_lcl);
+ wgt_arr=(double *)nco_malloc(wgt_nbr*sizeof(double));
+ for(idx=0L;idx<wgt_nbr;idx++){
+ wgt_arr[idx]=strtod(wgt_lst_in[idx],&sng_cnv_rcd);
+ if(*sng_cnv_rcd) nco_sng_cnv_err(wgt_lst_in[idx],"strtod",sng_cnv_rcd);
+ wgt_avg_scl+=wgt_arr[idx];
+ } /* end loop over elements */
+ wgt_avg_scl/=wgt_nbr;
+ assert(wgt_avg_scl != 0.0);
+ for(idx=0L;idx<wgt_nbr;idx++) wgt_arr[idx]/=wgt_avg_scl;
+ } /* !wgt_nm */
+ break;
case 'X': /* Copy auxiliary coordinate argument for later processing */
aux_arg[aux_nbr]=(char *)strdup(optarg);
aux_nbr++;
@@ -666,7 +703,6 @@ main(int argc,char **argv)
/* Open file using appropriate buffer size hints and verbosity */
if(RAM_OPEN) md_open=NC_NOWRITE|NC_DISKLESS; else md_open=NC_NOWRITE;
rcd+=nco_fl_open(fl_in,md_open,&bfr_sz_hnt,&in_id);
-
(void)nco_inq_format(in_id,&fl_in_fmt);
/* Initialize traversal table */
@@ -739,7 +775,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -749,7 +785,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Define dimensions, extracted groups, variables, and attributes in output file */
(void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,(char *)NULL,trv_tbl);
@@ -804,9 +840,6 @@ main(int argc,char **argv)
/* Write ensemble fixed variables (False parameter) */
if(nco_prg_id_get() == ncge) (void)nco_nsm_dfn_wrt(in_id,out_id,&cnk,dfl_lvl,gpe,False,trv_tbl);
- /* Close first input netCDF file */
- nco_close(in_id);
-
/* Allocate and, if necesssary, initialize accumulation space for processed variables */
for(idx=0;idx<nbr_var_prc;idx++){
if(nco_prg_id == ncra || nco_prg_id == ncrcat){
@@ -823,6 +856,21 @@ main(int argc,char **argv)
} /* end if */
} /* end loop over idx */
+ if(wgt_nm && (nco_op_typ == nco_op_avg || nco_op_typ == nco_op_mebs)){
+ /* Find weighting variable that matches current variable */
+ wgt=nco_var_get_wgt_trv(in_id,wgt_nm,var_prc[0],trv_tbl);
+ wgt_out=nco_var_dpl(wgt);
+ wgt_out->tally=wgt->tally=(long *)nco_malloc(wgt_out->sz_rec*sizeof(long));
+ wgt_out->val.vp=(void *)nco_malloc(wgt_out->sz_rec*nco_typ_lng(wgt_out->type));
+ (void)nco_zero_long(wgt_out->sz_rec,wgt_out->tally);
+ (void)nco_var_zero(wgt_out->type,wgt_out->sz_rec,wgt_out->val);
+ if(nco_dbg_lvl >= nco_dbg_std) (void)fprintf(stdout,"wgt_nm = %s, wgt_out->nm = %s\n",wgt_nm,wgt_out->nm_fll);
+ assert(wgt_out->nbr_dim < 2);
+ } /* !wgt_nm */
+
+ /* Close first input netCDF file */
+ nco_close(in_id);
+
/* Timestamp end of metadata setup and disk layout */
rcd+=nco_ddra((char *)NULL,(char *)NULL,&ddra_info);
ddra_info.tmr_flg=nco_tmr_rgl;
@@ -861,9 +909,16 @@ main(int argc,char **argv)
} /* end loop over variables */
} /* ! ncge */
+ if(wgt_nm && (nco_op_typ == nco_op_avg || nco_op_typ == nco_op_mebs)){
+ /* Get variable ID in this file */
+ trv_sct *trv=trv_tbl_var_nm_fll(wgt_out->nm_fll,trv_tbl);
+ (void)nco_inq_grp_full_ncid(in_id,trv->grp_nm_fll,&grp_id);
+ (void)nco_var_mtd_refresh(grp_id,wgt_out);
+ } /* !wgt_nm */
+
if(nco_prg_id == ncra || nco_prg_id == ncrcat){ /* ncfe and ncge jump to else branch */
- /* Loop over number of different record variables in file */
+ /* Loop over number of different record dimensions in file */
for(idx_rec=0;idx_rec<nbr_rec;idx_rec++){
/* Obtain group ID */
@@ -932,6 +987,10 @@ main(int argc,char **argv)
/* ncra normalization/writing code must know last record in current group (LRCG) for both MRO and non-MRO */
if(rec_rmn_prv_ssc == 1L) REC_LST_GRP=True; else REC_LST_GRP=False;
+ /* Retrieve this record of weight variable */
+ if(wgt_nm && (nco_op_typ == nco_op_avg || nco_op_typ == nco_op_mebs))
+ (void)nco_msa_var_get_rec_trv(in_id,wgt_out,lmt_rec[idx_rec]->nm_fll,idx_rec_crr_in,trv_tbl);
+
/* Process all variables in current record */
if(nco_dbg_lvl >= nco_dbg_scl) (void)fprintf(fp_stdout,"%s: INFO Record %ld of %s contributes to output record %ld\n",nco_prg_nm_get(),idx_rec_crr_in,fl_in,idx_rec_out[idx_rec]);
@@ -971,7 +1030,7 @@ main(int argc,char **argv)
if(nco_prg_id == ncra) FLG_BFR_NRM=True; /* [flg] Current output buffers need normalization */
/* Re-base record coordinate and bounds if necessary (e.g., time, time_bnds) */
- if(lmt_rec[idx_rec]->origin != 0.0 && (var_prc[idx]->is_crd_var || nco_is_spc_in_bnd_att(grp_id,var_prc[idx]->id))){
+ if(lmt_rec[idx_rec]->origin != 0.0 && (var_prc[idx]->is_crd_var || nco_is_spc_in_bnd_att(grp_id,var_prc[idx]->id) || nco_is_spc_in_clm_att(grp_id,var_prc[idx]->id))){
var_sct *var_crd;
scv_sct scv;
/* De-reference */
@@ -1003,9 +1062,33 @@ main(int argc,char **argv)
if(flg_rth_ntl) var_prc_out[idx]=nco_typ_cnv_rth(var_prc_out[idx],nco_op_typ);
var_prc_typ_pre_prm=var_prc[idx]->type; /* [enm] Type of variable before promotion */
var_prc[idx]=nco_var_cnf_typ(var_prc_out[idx]->type,var_prc[idx]);
- /* Perform arithmetic operations: avg, min, max, ttl, ... */
- if(flg_rth_ntl) nco_opr_drv((long)0L,nco_op_typ,var_prc[idx],var_prc_out[idx]); else nco_opr_drv((long)1L,nco_op_typ,var_prc[idx],var_prc_out[idx]);
- } /* end else */
+
+ /* Weight current record */
+ if((wgt_arr || wgt_nm) && (nco_op_typ == nco_op_avg || nco_op_typ == nco_op_mebs) && !var_prc[idx]->is_crd_var){
+ if(wgt_arr){
+ /* Per-file weight */
+ assert(wgt_nbr == fl_nbr);
+ wgt_scv.type=NC_DOUBLE;
+ wgt_scv.val.d=wgt_arr[fl_idx];
+ } /* !wgt_arr */
+ if(wgt_nm){
+ wgt_scv.val.d=wgt_out->val.dp[0]; /* Per-record weight */
+ wgt_scv.type=wgt_out->type;
+ } /* !wgt_nm */
+ nco_scv_cnf_typ(var_prc[idx]->type,&wgt_scv);
+ if(nco_dbg_lvl > nco_dbg_std && (wgt_nm || wgt_arr)) (void)fprintf(stdout,"wgt_nm = %s, var_nm = %s, idx = %li, typ = %s, wgt_val = %g, var_val=%g\n",wgt_nm ? wgt_out->nm_fll : "NULL",var_prc[idx]->nm,idx_rec_crr_in,nco_typ_sng(wgt_scv.type),wgt_scv.val.d,var_prc[idx]->val.dp[0]);
+ (void)nco_var_scv_mlt(var_prc[idx]->type,var_prc[idx]->sz,var_prc[idx]->has_mss_val,var_prc[idx]->mss_val,var_prc[idx]->val,&wgt_scv);
+ /* Increment running total of weight after its application to last processed variable */
+ if(wgt_nm){
+ wgt_avg=nco_var_dpl(wgt_out);
+ if(idx == nbr_var_prc-1){
+ if(flg_rth_ntl) nco_opr_drv((long)0L,nco_op_typ,wgt_out,wgt_avg); else nco_opr_drv((long)1L,nco_op_typ,wgt_out,wgt_avg);
+ } /* endif */
+ } /* !wgt_nm */
+ } /* !wgt */
+ /* Perform arithmetic operations: avg, min, max, ttl, ... */
+ if(flg_rth_ntl) nco_opr_drv((long)0L,nco_op_typ,var_prc[idx],var_prc_out[idx]); else nco_opr_drv((long)1L,nco_op_typ,var_prc[idx],var_prc_out[idx]);
+ } /* end else */
} /* end if ncra */
/* All processed variables contain record dimension and both ncrcat and ncra write records singly */
@@ -1058,6 +1141,22 @@ main(int argc,char **argv)
(void)nco_opr_nrm(nco_op_typ,nbr_var_prc,var_prc,var_prc_out,lmt_rec[idx_rec]->nm_fll,trv_tbl);
FLG_BFR_NRM=False; /* [flg] Current output buffers need normalization */
+ if(wgt_nm && (nco_op_typ == nco_op_avg || nco_op_typ == nco_op_mebs)){
+ /* Compute mean of per-record weight, by normalizing running sum of weight by tally
+ Then normalize all numerical record variables by mean of per-record weight
+ Still ill-defined when MRO is invoked with --wgt
+ Same logic must be applied after file loop for nces, and for ncra with superfluous trailing files */
+ wgt_avg_scv.type=NC_DOUBLE;
+ wgt_avg->val.dp[0]/=wgt_avg->tally[0];
+ wgt_avg_scv.val.d=wgt_avg->val.dp[0];
+ for(idx=0;idx<nbr_var_prc;idx++){
+ if(var_prc_out[idx]->is_crd_var || var_prc[idx]->type == NC_CHAR || var_prc[idx]->type == NC_STRING) continue;
+ nco_scv_cnf_typ(var_prc_out[idx]->type,&wgt_avg_scv);
+ (void)nco_var_scv_dvd(var_prc_out[idx]->type,var_prc_out[idx]->sz,var_prc_out[idx]->has_mss_val,var_prc_out[idx]->mss_val,var_prc_out[idx]->val,&wgt_avg_scv);
+ } /* end loop over var */
+ if(wgt_avg) wgt_avg=(var_sct *)nco_var_free(wgt_avg);
+ } /* !wgt_nm */
+
/* Copy averages to output file */
for(idx=0;idx<nbr_var_prc;idx++){
@@ -1308,7 +1407,7 @@ main(int argc,char **argv)
In such cases FLG_BFR_NRM is still true, indicating ncra still needs normalization
FLG_BFR_NRM is always true here for ncfe and ncge */
if(FLG_BFR_NRM) (void)nco_opr_nrm(nco_op_typ,nbr_var_prc,var_prc,var_prc_out,(char *)NULL,(trv_tbl_sct *)NULL);
-
+
/* Manually fix YYMMDD date which was mangled by averaging */
if(CNV_CCM_CCSM_CF && nco_prg_id == ncra) (void)nco_cnv_ccm_ccsm_cf_date(grp_out_id,var_out,xtr_nbr);
@@ -1387,11 +1486,14 @@ main(int argc,char **argv)
if(fl_pth) fl_pth=(char *)nco_free(fl_pth);
if(fl_pth_lcl) fl_pth_lcl=(char *)nco_free(fl_pth_lcl);
if(in_id_arr) in_id_arr=(int *)nco_free(in_id_arr);
+ if(wgt_arr) wgt_arr=(double *)nco_free(wgt_arr);
+ if(wgt_nm) wgt_nm=(char *)nco_free(wgt_nm);
/* Free lists of strings */
if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr);
if(fl_lst_in && fl_lst_abb) fl_lst_in=nco_sng_lst_free(fl_lst_in,1);
if(fl_lst_abb) fl_lst_abb=nco_sng_lst_free(fl_lst_abb,abb_arg_nbr);
if(var_lst_in_nbr > 0) var_lst_in=nco_sng_lst_free(var_lst_in,var_lst_in_nbr);
+ if(wgt_nbr > 0) wgt_lst_in=nco_sng_lst_free(wgt_lst_in,wgt_nbr);
/* Free limits */
for(idx=0;idx<aux_nbr;idx++) aux_arg[idx]=(char *)nco_free(aux_arg[idx]);
for(idx=0;idx<lmt_nbr;idx++) lmt_arg[idx]=(char *)nco_free(lmt_arg[idx]);
@@ -1410,6 +1512,10 @@ main(int argc,char **argv)
var_fix=(var_sct **)nco_free(var_fix);
var_fix_out=(var_sct **)nco_free(var_fix_out);
if(md5) md5=(md5_sct *)nco_md5_free(md5);
+ // fxm free this memory:
+ // if(wgt) wgt=(var_sct *)nco_var_free(wgt);
+ // if(wgt_out) wgt_out=(var_sct *)nco_var_free(wgt_out);
+ // if(wgt_avg) wgt_avg=(var_sct *)nco_var_free(wgt_avg);
(void)trv_tbl_free(trv_tbl);
for(idx=0;idx<lmt_nbr;idx++) flg_dne[idx].dim_nm=(char *)nco_free(flg_dne[idx].dim_nm);
diff --git a/src/nco/ncrename.c b/src/nco/ncrename.c
index 4aa87b0..8a845ad 100644
--- a/src/nco/ncrename.c
+++ b/src/nco/ncrename.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncrename.c,v 1.209 2014/12/31 01:50:08 zender Exp $ */
+/* $Header$ */
/* ncrename -- netCDF renaming operator */
@@ -115,8 +115,8 @@ main(int argc,char **argv)
char *obj_nm=NULL;
- const char * const CVS_Id="$Id: ncrename.c,v 1.209 2014/12/31 01:50:08 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.209 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="a:D:d:g:hl:Oo:p:rv:-:";
const char dlm_chr='@'; /* Character delimiting variable from attribute name */
const char opt_chr='.'; /* Character indicating presence of following variable/dimension/attribute/group in file is optional */
@@ -374,7 +374,7 @@ main(int argc,char **argv)
/* Initialize traversal table */
trv_tbl_init(&trv_tbl);
- /* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list*/
+ /* Construct GTT (Group Traversal Table), check -v and -g input names and create extraction list */
(void)nco_bld_trv_tbl(nc_id,trv_pth,(int)0,NULL,(int)0,NULL,False,False,NULL,(int)0,NULL,(int)0,False,False,False,False,True,nco_pck_plc_nil,NULL,trv_tbl);
/* Rename variables */
diff --git a/src/nco/ncwa.c b/src/nco/ncwa.c
index 51a9649..4c4c00e 100644
--- a/src/nco/ncwa.c
+++ b/src/nco/ncwa.c
@@ -1,4 +1,4 @@
-/* $Header: /cvsroot/nco/nco/src/nco/ncwa.c,v 1.436 2015/02/09 22:35:36 zender Exp $ */
+/* $Header$ */
/* ncwa -- netCDF weighted averager */
@@ -152,8 +152,8 @@ main(int argc,char **argv)
char *wgt_nm=NULL;
char trv_pth[]="/"; /* [sng] Root path of traversal tree */
- const char * const CVS_Id="$Id: ncwa.c,v 1.436 2015/02/09 22:35:36 zender Exp $";
- const char * const CVS_Revision="$Revision: 1.436 $";
+ const char * const CVS_Id="$Id$";
+ const char * const CVS_Revision="$Revision$";
const char * const opt_sht_lst="3467Aa:B:bCcD:d:Fg:G:hIL:l:M:m:nNOo:p:rRT:t:v:Ww:xy:-:";
cnk_sct cnk; /* [sct] Chunking structure */
@@ -655,7 +655,7 @@ main(int argc,char **argv)
#endif /* _MSC_VER */
/* Ensure we do not attempt to normalize by non-existent weight */
- if(wgt_nm == NULL) NORMALIZE_BY_WEIGHT=False;
+ if(!wgt_nm) NORMALIZE_BY_WEIGHT=False;
/* Process positional arguments and fill in filenames */
fl_lst_in=nco_fl_lst_mk(argv,argc,optind,&fl_nbr,&fl_out,&FL_LST_IN_FROM_STDIN);
@@ -712,7 +712,7 @@ main(int argc,char **argv)
/* Transfer degenerated dimensions information into GTT */
(void)nco_dmn_dgn_tbl(dmn_out,nbr_dmn_out,trv_tbl);
- /* Fill-in variable structure list for all extracted variables. NOTE: Using GTT version */
+ /* Fill-in variable structure list for all extracted variables */
var=nco_fll_var_trv(in_id,&xtr_nbr,trv_tbl);
/* Duplicate to output array */
@@ -742,7 +742,7 @@ main(int argc,char **argv)
/* Make output and input files consanguinous */
if(fl_out_fmt == NCO_FORMAT_UNDEFINED) fl_out_fmt=fl_in_fmt;
- /* Inititialize, decode, and set PPC information */
+ /* Initialize, decode, and set PPC information */
if(ppc_nbr > 0) nco_ppc_ini(in_id,&dfl_lvl,fl_out_fmt,ppc_arg,ppc_nbr,trv_tbl);
/* Verify output file format supports requested actions */
@@ -752,7 +752,7 @@ main(int argc,char **argv)
fl_out_tmp=nco_fl_out_open(fl_out,FORCE_APPEND,FORCE_OVERWRITE,fl_out_fmt,&bfr_sz_hnt,RAM_CREATE,RAM_OPEN,WRT_TMP_FL,&out_id);
/* Create structure with all chunking information */
- if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
+ if(fl_out_fmt == NC_FORMAT_NETCDF4 || fl_out_fmt == NC_FORMAT_NETCDF4_CLASSIC) rcd+=nco_cnk_ini(in_id,fl_out,cnk_arg,cnk_nbr,cnk_map,cnk_plc,cnk_min_byt,cnk_sz_byt,cnk_sz_scl,&cnk);
/* Define dimensions, extracted groups, variables, and attributes in output file. */
(void)nco_xtr_dfn(in_id,out_id,&cnk,dfl_lvl,gpe,md5,True,True,False,nco_pck_plc_nil,(char *)NULL,trv_tbl);
@@ -884,12 +884,12 @@ main(int argc,char **argv)
var_prc_out[idx]->sz=var_prc[idx]->sz;
/* fxm: verify that var_prc->tally is not needed */
- if((var_prc_out[idx]->tally=(long *)nco_malloc_flg(var_prc_out[idx]->sz*sizeof(long))) == NULL){
+ if(!(var_prc_out[idx]->tally=(long *)nco_malloc_flg(var_prc_out[idx]->sz*sizeof(long)))){
(void)fprintf(fp_stdout,"%s: ERROR Unable to malloc() %ld*%ld bytes for tally buffer for variable %s in main()\n",nco_prg_nm_get(),var_prc_out[idx]->sz,(long)sizeof(long),var_prc_out[idx]->nm);
nco_exit(EXIT_FAILURE);
} /* end if err */
(void)nco_zero_long(var_prc_out[idx]->sz,var_prc_out[idx]->tally);
- if((var_prc_out[idx]->val.vp=(void *)nco_malloc_flg(var_prc_out[idx]->sz*nco_typ_lng(var_prc_out[idx]->type))) == NULL){
+ if(!(var_prc_out[idx]->val.vp=(void *)nco_malloc_flg(var_prc_out[idx]->sz*nco_typ_lng(var_prc_out[idx]->type)))){
(void)fprintf(fp_stdout,"%s: ERROR Unable to malloc() %ld*%lu bytes for value buffer for variable %s in main()\n",nco_prg_nm_get(),var_prc_out[idx]->sz,(unsigned long)nco_typ_lng(var_prc_out[idx]->type),var_prc_out[idx]->nm);
nco_exit(EXIT_FAILURE);
} /* end if err */
@@ -950,8 +950,7 @@ main(int argc,char **argv)
wgt_out=nco_var_cnf_dmn(var_prc[idx],wgt,wgt_out,MUST_CONFORM,&DO_CONFORM_WGT);
if(DO_CONFORM_WGT){
wgt_out=nco_var_cnf_typ(var_prc[idx]->type,wgt_out);
- /* Weight after any initial non-linear operation so, e.g., variable is squared but not weights */
- /* Weight variable by taking product of weight and variable */
+ /* Weight variable after any initial non-linear operation so, e.g., variable (not weights) is squared */
(void)nco_var_mlt(var_prc[idx]->type,var_prc[idx]->sz,var_prc[idx]->has_mss_val,var_prc[idx]->mss_val,wgt_out->val,var_prc[idx]->val);
} /* end if weights conformed */
} /* end if weight was specified and then tested for conformance */
@@ -961,11 +960,11 @@ main(int argc,char **argv)
/* Reduce variable over specified dimensions (tally array is set here)
NB: var_prc_out[idx] is new, so corresponding var_out[idx] is dangling
nco_var_avg() will perform nco_op_typ on all variables except coordinate variables
- nco_var_avg() always performs averaging on coordinate variables */
+ nco_var_avg() always averages coordinate variables */
var_prc_out[idx]=nco_var_avg(var_prc_out[idx],dmn_avg,dmn_avg_nbr,nco_op_typ,flg_rdd,&ddra_info);
/* var_prc_out[idx]->val now holds numerator of averaging expression documented in NCO User's Guide
Denominator is also tricky due to sundry normalization options
- These logical switches are VERY tricky---be careful modifying them */
+ These logical switches are tricky---modify them with care */
if(NRM_BY_DNM && DO_CONFORM_WGT && (!var_prc[idx]->is_crd_var || WGT_MSK_CRD_VAR)){
/* Duplicate wgt_out as wgt_avg so that wgt_out is not contaminated by any
averaging operation and may be re-used on next variable.
@@ -1021,7 +1020,7 @@ main(int argc,char **argv)
When this occurs the nco_var_dpl() call in nco_var_cnf_dmn() does not copy
tally array into wgt_avg. See related note about this above. TODO #114.*/
if(wgt_avg->sz > 0)
- if((wgt_avg->tally=(long *)nco_realloc(wgt_avg->tally,wgt_avg->sz*sizeof(long))) == NULL){
+ if(!(wgt_avg->tally=(long *)nco_realloc(wgt_avg->tally,wgt_avg->sz*sizeof(long)))){
(void)fprintf(fp_stdout,"%s: ERROR Unable to realloc() %ld*%ld bytes for tally buffer for weight %s in main()\n",nco_prg_nm_get(),wgt_avg->sz,(long)sizeof(long),wgt_avg->nm);
nco_exit(EXIT_FAILURE);
} /* end if */
diff --git a/src/nco_c++/.gitignore b/src/nco_c++/.gitignore
new file mode 100644
index 0000000..dee6042
--- /dev/null
+++ b/src/nco_c++/.gitignore
@@ -0,0 +1,7 @@
+# Git-ignore patterns for ~/nco/src/nco_c++
+/Makefile
+
+# Created locally by configure->make tst
+/tst
+/tst.log
+/tst.trs
diff --git a/src/nco_c++/INSTALL b/src/nco_c++/INSTALL
index 0bf35ce..fb33b92 100644
--- a/src/nco_c++/INSTALL
+++ b/src/nco_c++/INSTALL
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/src/nco_c++/INSTALL,v 1.3 2003/01/16 09:26:55 zender Exp $
+$Header$
Purpose: Installation instructions for libnco_c++
diff --git a/src/nco_c++/Makefile.am b/src/nco_c++/Makefile.am
index ed1b326..5114768 100644
--- a/src/nco_c++/Makefile.am
+++ b/src/nco_c++/Makefile.am
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco_c++/Makefile.am,v 1.10 2006/12/03 01:58:24 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
test_data = in.nc
diff --git a/src/nco_c++/Makefile.in b/src/nco_c++/Makefile.in
index 9e1dcdb..ecb8406 100644
--- a/src/nco_c++/Makefile.in
+++ b/src/nco_c++/Makefile.in
@@ -14,7 +14,7 @@
@SET_MAKE@
-# $Header: /cvsroot/nco/nco/src/nco_c++/Makefile.in,v 1.115 2015/01/07 18:07:24 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
VPATH = @srcdir@
@@ -416,6 +416,8 @@ ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
EGREP = @EGREP@
+ESMF_INC = @ESMF_INC@
+ESMF_LIB = @ESMF_LIB@
EXEEXT = @EXEEXT@
FGREP = @FGREP@
GREP = @GREP@
diff --git a/src/nco_c++/Makefile.old b/src/nco_c++/Makefile.old
index 3835c1e..dad8c31 100644
--- a/src/nco_c++/Makefile.old
+++ b/src/nco_c++/Makefile.old
@@ -1,4 +1,4 @@
-# $Header: /cvsroot/nco/nco/src/nco_c++/Makefile.old,v 1.114 2015/02/04 21:56:08 zender Exp $ -*-makefile-*-
+# $Header$ -*-makefile-*-
# Purpose: Makefile for libnco_c++ module nco_c++
# Requires GNU Make---AT&T Make chokes on GNU syntax
@@ -242,6 +242,15 @@ endif # endif PRC
# NB: CPP_TKN is recursively expanded variable, define only when components are ready
CPP_TKN = ${USR_TKN} -D${PVM_ARCH} -DNO_NETCDF_2 -DVERSION='${VRS_SNG}' -DHOSTNAME='${HOST}' -DUSER='${USER}' -DNCO_ABORT_ON_ERROR
+ifeq (${SZ},Y)
+# 20150515: -lsz needed (at least by icc) on rhea
+ifdef SZ_LIB
+ SZ_LIB_FLG := -L${SZ_LIB} -lsz
+else
+ SZ_LIB_FLG := -lsz
+endif # end if SZ_LIB
+endif # end if SZ
+
# At this point we change NETCDF_INC from a directory to a flag
NC_CFLAGS := $(shell nc-config --cflags)
NC_LDFLAGS := $(shell nc-config --libs)
@@ -260,7 +269,7 @@ ifdef LIB_NCAR
endif
OTHER_CFLAGS := ${NC_CFLAGS} ${MPI_CFLAGS} ${GSL_INC_FLG} ${UDUNITS_INC_FLG}
-OTHER_LDFLAGS := ${NCO_LDFLAGS} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${UDUNITS_LIB_FLG}
+OTHER_LDFLAGS := ${NCO_LDFLAGS} ${NC_LDFLAGS} ${MPI_LDFLAGS} ${GSL_LIB_FLG} ${SZ_LIB_FLG} ${UDUNITS_LIB_FLG}
# NB: Do NOT add comment lines, e.g., # This is a comma, to character definitions
null :=
diff --git a/src/nco_c++/README b/src/nco_c++/README
index c21a09e..d74b99c 100644
--- a/src/nco_c++/README
+++ b/src/nco_c++/README
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/src/nco_c++/README,v 1.6 2012/06/14 20:20:14 zender Exp $
+$Header$
Purpose: Document libnco_c++
diff --git a/src/nco_c++/TODO b/src/nco_c++/TODO
index 1e458ce..94ecf9b 100644
--- a/src/nco_c++/TODO
+++ b/src/nco_c++/TODO
@@ -1,4 +1,4 @@
-$Header: /cvsroot/nco/nco/src/nco_c++/TODO,v 1.4 2005/01/10 02:22:47 zender Exp $
+$Header$
Purpose: Task list for libnco_c++.a
diff --git a/src/nco_c++/libnco_c++.hh b/src/nco_c++/libnco_c++.hh
index e7193c8..420258e 100644
--- a/src/nco_c++/libnco_c++.hh
+++ b/src/nco_c++/libnco_c++.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/libnco_c++.hh,v 1.21 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Prototypes, typedefs, and global variables for libnco_c++
diff --git a/src/nco_c++/nco_att.cc b/src/nco_c++/nco_att.cc
index 62e71e1..3000a52 100644
--- a/src/nco_c++/nco_att.cc
+++ b/src/nco_c++/nco_att.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_att.cc,v 1.24 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Implementation (declaration) of C++ interface to netCDF attribute routines
diff --git a/src/nco_c++/nco_att.hh b/src/nco_c++/nco_att.hh
index dd9bb49..e1ff780 100644
--- a/src/nco_c++/nco_att.hh
+++ b/src/nco_c++/nco_att.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_att.hh,v 1.23 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of C++ interface to netCDF attribute routines
diff --git a/src/nco_c++/nco_dmn.cc b/src/nco_c++/nco_dmn.cc
index f715a6c..ed00458 100644
--- a/src/nco_c++/nco_dmn.cc
+++ b/src/nco_c++/nco_dmn.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_dmn.cc,v 1.19 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Implementation (declaration) of C++ interface to netCDF dimension routines
diff --git a/src/nco_c++/nco_dmn.hh b/src/nco_c++/nco_dmn.hh
index b4203cd..46cea85 100644
--- a/src/nco_c++/nco_dmn.hh
+++ b/src/nco_c++/nco_dmn.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_dmn.hh,v 1.18 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of C++ interface to netCDF dimension routines
diff --git a/src/nco_c++/nco_fl.cc b/src/nco_c++/nco_fl.cc
index 778aa54..ec102ce 100644
--- a/src/nco_c++/nco_fl.cc
+++ b/src/nco_c++/nco_fl.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_fl.cc,v 1.19 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Implementation (declaration) of C++ interface to netCDF file-level routines
diff --git a/src/nco_c++/nco_fl.hh b/src/nco_c++/nco_fl.hh
index 48cb09e..40ddd9b 100644
--- a/src/nco_c++/nco_fl.hh
+++ b/src/nco_c++/nco_fl.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_fl.hh,v 1.18 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of C++ interface to netCDF file-level routines
diff --git a/src/nco_c++/nco_hgh.cc b/src/nco_c++/nco_hgh.cc
index 1fec915..27ab254 100644
--- a/src/nco_c++/nco_hgh.cc
+++ b/src/nco_c++/nco_hgh.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_hgh.cc,v 1.22 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Implementation (declaration) of C++ interface to high-level NCO utilities
@@ -48,7 +48,7 @@ nco_var_dfn // [fnc] Define variables in output netCDF file
int rcd(0); // Return success code
// Local
- register long idx; // [idx] Counting index
+ long idx; // [idx] Counting index
const std::string sbr_nm("nco_var_dfn"); // [sng] Name of subroutine
const unsigned short int nco_dbg_lvl(0); // [sng] Debugging level
if(nco_dbg_lvl >= nco_dbg_sbr) std::cerr << "DEBUG: Entering " << sbr_nm << "()..." << std::endl;
diff --git a/src/nco_c++/nco_hgh.hh b/src/nco_c++/nco_hgh.hh
index b1d7954..f7de8ee 100644
--- a/src/nco_c++/nco_hgh.hh
+++ b/src/nco_c++/nco_hgh.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_hgh.hh,v 1.18 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of high-level NCO routines
diff --git a/src/nco_c++/nco_utl.cc b/src/nco_c++/nco_utl.cc
index 2074e0c..762d4f3 100644
--- a/src/nco_c++/nco_utl.cc
+++ b/src/nco_c++/nco_utl.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_utl.cc,v 1.30 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Implementation (declaration) of C++ interface utilities for netCDF routines
@@ -344,7 +344,7 @@ nco_dfl_case_nctype_err(void) // [fnc] Handle illegal nc_type references
NETCDF2_ONLY.
This makes the behavior easy to modify or remove in the future.
- Placing this in its own routine also has the virtue of saving many lines
+ Placing this in its own routine saves many lines
of code since this function is used in many many switch() statements. */
const std::string sbr_nm("nco_dfl_case_nctype_err()");
std::cout << sbr_nm << ": ERROR switch(nctype) statement fell through to default case, which is illegal.\nNot handling the default case causes gcc to emit warnings when compiling NCO with the NETCDF2_ONLY token (because nctype defintion is braindead in netCDF2). Exiting..." << std::endl;
diff --git a/src/nco_c++/nco_utl.hh b/src/nco_c++/nco_utl.hh
index 03ac213..91460e9 100644
--- a/src/nco_c++/nco_utl.hh
+++ b/src/nco_c++/nco_utl.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_utl.hh,v 1.30 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of C++ interface utilities for netCDF routines
diff --git a/src/nco_c++/nco_var.cc b/src/nco_c++/nco_var.cc
index 5fde233..3530cd8 100644
--- a/src/nco_c++/nco_var.cc
+++ b/src/nco_c++/nco_var.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_var.cc,v 1.38 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Implementation (declaration) of C++ interface to netCDF variable routines
diff --git a/src/nco_c++/nco_var.hh b/src/nco_c++/nco_var.hh
index efcb02e..c2a0612 100644
--- a/src/nco_c++/nco_var.hh
+++ b/src/nco_c++/nco_var.hh
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/nco_var.hh,v 1.34 2014/12/31 01:50:08 zender Exp $
+// $Header$
// Purpose: Description (definition) of C++ interface to netCDF variable routines
diff --git a/src/nco_c++/tst.cc b/src/nco_c++/tst.cc
index 336b087..eaaacc9 100644
--- a/src/nco_c++/tst.cc
+++ b/src/nco_c++/tst.cc
@@ -1,4 +1,4 @@
-// $Header: /cvsroot/nco/nco/src/nco_c++/tst.cc,v 1.41 2014/06/15 21:06:25 zender Exp $
+// $Header$
// Purpose: Test for C++ programs using libnco_c++ API
@@ -53,12 +53,12 @@ int main(int argc,char **argv)
long lat_nbr(1); // [nbr] Number of latitudes
long lon_nbr(1); // [nbr] Number of longitudes
long sz_nbr(1); // [nbr] Number of sizes
- register long idx; // [idx] Counting index
+ long idx; // [idx] Counting index
- const std::string CVS_Date("$Date: 2014/06/15 21:06:25 $"); // [sng] CVS date string
- const std::string CVS_Header("$Header: /cvsroot/nco/nco/src/nco_c++/tst.cc,v 1.41 2014/06/15 21:06:25 zender Exp $"); // [sng] CVS header string
- const std::string CVS_Id("$Id: tst.cc,v 1.41 2014/06/15 21:06:25 zender Exp $"); // [sng] CVS identification string
- const std::string CVS_Revision("$Revision: 1.41 $"); // [sng] CVS revision string
+ const std::string CVS_Date("$Date$"); // [sng] CVS date string
+ const std::string CVS_Header("$Header$"); // [sng] CVS header string
+ const std::string CVS_Id("$Id$"); // [sng] CVS identification string
+ const std::string CVS_Revision("$Revision$"); // [sng] CVS revision string
const std::string date_cvs(CVS_Date.length() > 7 ? CVS_Date.substr(7,19) : static_cast<std::string>("Unknown")); // [sng] Date from CVS
const std::string sbr_nm("main"); // [sng] Subroutine name
const std::string prg_nm("libnco_c++"); // [sng] Program name
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/nco.git
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