[nco] 06/07: Add patch for GSL 2.0 support.
Sebastiaan Couwenberg
sebastic at moszumanska.debian.org
Fri Nov 6 14:38:00 UTC 2015
This is an automated email from the git hooks/post-receive script.
sebastic pushed a commit to branch master
in repository nco.
commit eeb3a33f0e8d1221b8021e7a730f0197dbabf740
Author: Bas Couwenberg <sebastic at xs4all.nl>
Date: Fri Nov 6 12:11:42 2015 +0100
Add patch for GSL 2.0 support.
---
debian/changelog | 1 +
debian/patches/gsl-2.0.patch | 187 +++++++++++++++++++++++++++++++++++++++++++
debian/patches/series | 1 +
3 files changed, 189 insertions(+)
diff --git a/debian/changelog b/debian/changelog
index b8d9d3e..84e5e92 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,7 @@ nco (4.5.3-1) UNRELEASED; urgency=medium
* New upstream release.
* Drop obsolete convert script.
* Update libgsl-dev build dependendency for gsl 2.0.
+ * Add patch for GSL 2.0 support.
-- Bas Couwenberg <sebastic at debian.org> Fri, 06 Nov 2015 10:58:54 +0100
diff --git a/debian/patches/gsl-2.0.patch b/debian/patches/gsl-2.0.patch
new file mode 100644
index 0000000..62d76ef
--- /dev/null
+++ b/debian/patches/gsl-2.0.patch
@@ -0,0 +1,187 @@
+Description: Add support for GSL 2.0
+Author: Bas Couwenberg <sebastic at debian.org>
+Bug: https://github.com/nco/nco/issues/19
+Forwarded: https://github.com/nco/nco/pull/20
+
+--- a/configure.ac
++++ b/configure.ac
+@@ -649,15 +649,18 @@ if test "${enable_gsl}" != 'no'; then
+ LIBS="${nco_LIBS_no_GSL}"
+ CPPFLAGS="${nco_CPPFLAGS_no_GSL}"
+ elif test "${enable_gsl}" = 'yes'; then
+-# Assumes GSL version in form 1.[0-9]+ extract minor version only
++# Assumes GSL version in form [0-9].[0-9]+ extract major & minor version
+ GSL_VER="`${GSL_CONFIG} --version`"
+- GSL_VER=`echo "${GSL_VER}" | sed -e 's/^1\.//'`
++ GSL_VER_MAJOR="`echo "${GSL_VER}" | cut -d '.' -f 1`"
++ GSL_VER_MINOR="`echo "${GSL_VER}" | cut -d '.' -f 2`"
+ if test "x${GSL_VER}" = 'x'; then
+ # 20100115: Fix for machines like bluefire that lack gsl-config
+- GSL_VER='4'
++ GSL_VER_MAJOR='1'
++ GSL_VER_MINOR='4'
+ fi
+ AC_DEFINE(ENABLE_GSL,1,Compile operators with GSL support)
+- AC_DEFINE_UNQUOTED(NCO_GSL_MINOR_VERSION,${GSL_VER},GSL minor version number)
++ AC_DEFINE_UNQUOTED(NCO_GSL_MAJOR_VERSION,${GSL_VER_MAJOR},GSL major version number)
++ AC_DEFINE_UNQUOTED(NCO_GSL_MINOR_VERSION,${GSL_VER_MINOR},GSL minor version number)
+ AC_MSG_NOTICE([GSL support enabled])
+ fi
+ fi
+--- a/config.h.in
++++ b/config.h.in
+@@ -418,6 +418,9 @@
+ /* Building TeXInfo documentation requires version greater than 4.8 */
+ #undef MAKEINFO_VERSION
+
++/* GSL major version number */
++#undef NCO_GSL_MAJOR_VERSION
++
+ /* GSL minor version number */
+ #undef NCO_GSL_MINOR_VERSION
+
+--- a/src/nco++/fmc_gsl_cls.cc
++++ b/src/nco++/fmc_gsl_cls.cc
+@@ -117,7 +117,7 @@ void gsl_cls::gsl_ini_sf(void) {
+ gpr_vtr.push_back(gpr_cls("gsl_sf_debye_3",f_unn(gsl_sf_debye_3_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_debye_4",f_unn(gsl_sf_debye_4_e),hnd_fnc_x,NC_DOUBLE));
+
+-# if NCO_GSL_MINOR_VERSION >= 8
++# if NCO_GSL_MINOR_VERSION >= 8 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_debye_5",f_unn(gsl_sf_debye_5_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_debye_6",f_unn(gsl_sf_debye_6_e),hnd_fnc_x,NC_DOUBLE));
+ # endif // NCO_GSL_MINOR_VERSION < 8
+@@ -131,7 +131,7 @@ void gsl_cls::gsl_ini_sf(void) {
+ gpr_vtr.push_back(gpr_cls("gsl_sf_ellint_Kcomp",f_unn(gsl_sf_ellint_Kcomp_e),hnd_fnc_nd,P1DBLMD));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_ellint_Ecomp",f_unn(gsl_sf_ellint_Ecomp_e),hnd_fnc_nd,P1DBLMD));
+
+-# if NCO_GSL_MINOR_VERSION >= 9
++# if NCO_GSL_MINOR_VERSION >= 9 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_ellint_Pcomp",f_unn(gsl_sf_ellint_Pcomp_e),hnd_fnc_nd,P2DBLMD));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_ellint_Dcomp",f_unn(gsl_sf_ellint_Dcomp_e),hnd_fnc_nd,P1DBLMD));
+ # endif // NCO_GSL_MINOR_VERSION < 9
+@@ -178,7 +178,7 @@ void gsl_cls::gsl_ini_sf(void) {
+ gpr_vtr.push_back(gpr_cls("gsl_sf_expint_E1_scaled",f_unn(gsl_sf_expint_E1_scaled_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_expint_E2_scaled",f_unn(gsl_sf_expint_E2_scaled_e),hnd_fnc_x,NC_DOUBLE));
+
+-# if NCO_GSL_MINOR_VERSION >= 10
++# if NCO_GSL_MINOR_VERSION >= 10 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_expint_En",f_unn(gsl_sf_expint_En_e),hnd_fnc_xd,NC_INT));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_expint_En_scaled",f_unn(gsl_sf_expint_En_scaled_e),hnd_fnc_xd,NC_INT));
+ # endif // NCO_GSL_MINOR_VERSION < 10
+@@ -271,10 +271,14 @@ void gsl_cls::gsl_ini_sf(void) {
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_Q1",f_unn(gsl_sf_legendre_Q1_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_Ql",f_unn(gsl_sf_legendre_Ql_e),hnd_fnc_xd,NC_INT));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_Plm",f_unn(gsl_sf_legendre_Plm_e),hnd_fnc_iid));
++# if NCO_GSL_MAJOR_VERSION < 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_Plm_array",f_unn(gsl_sf_legendre_Plm_array),hnd_fnc_iidpd,PLEGEND));
++# endif // NCO_GSL_MAJOR_VERSION < 2
+ // gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_Plm_deriv_array",f_unn(gsl_sf_legendre_Plm_deriv_array),));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_sphPlm",f_unn(gsl_sf_legendre_sphPlm_e),hnd_fnc_iid));
++# if NCO_GSL_MAJOR_VERSION < 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_sphPlm_array",f_unn(gsl_sf_legendre_sphPlm_array),hnd_fnc_iidpd,PLEGEND));
++# endif // NCO_GSL_MAJOR_VERSION < 2
+ // gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_sphPlm_deriv_array",f_unn(gsl_sf_legendre_sphPlm_deriv_array),));
+ // gpr_vtr.push_back(gpr_cls("gsl_sf_legendre_array_size",f_unn(gsl_sf_legendre_array_size),));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_conicalP_half",f_unn(gsl_sf_conicalP_half_e),hnd_fnc_nd,P2DBL));
+@@ -309,7 +313,7 @@ void gsl_cls::gsl_ini_sf(void) {
+ // gpr_vtr.push_back(gpr_cls("gsl_sf_complex_psi",f_unn(gsl_sf_complex_psi_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_psi_1_int",f_unn(gsl_sf_psi_1_int_e),hnd_fnc_x,NC_INT));
+
+-# if NCO_GSL_MINOR_VERSION >= 5
++# if NCO_GSL_MINOR_VERSION >= 5 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_psi_1",f_unn(gsl_sf_psi_1_e),hnd_fnc_x,NC_DOUBLE));
+ # endif // NCO_GSL_MINOR_VERSION < 5
+
+@@ -332,7 +336,7 @@ void gsl_cls::gsl_ini_sf(void) {
+ gpr_vtr.push_back(gpr_cls("gsl_sf_zeta_int",f_unn(gsl_sf_zeta_int_e),hnd_fnc_x,NC_INT));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_zeta",f_unn(gsl_sf_zeta_e),hnd_fnc_x,NC_DOUBLE));
+
+-# if NCO_GSL_MINOR_VERSION >= 5
++# if NCO_GSL_MINOR_VERSION >= 5 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_sf_zetam1",f_unn(gsl_sf_zetam1_e),hnd_fnc_x,NC_DOUBLE));
+ gpr_vtr.push_back(gpr_cls("gsl_sf_zetam1_int",f_unn(gsl_sf_zetam1_int_e),hnd_fnc_x,NC_INT));
+ # endif // NCO_GSL_MINOR_VERSION < 5
+@@ -386,7 +390,7 @@ void gsl_cls::gsl_ini_cdf(void){
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_exponential_Q",f_unn(gsl_cdf_exponential_Q),hnd_fnc_nd,P2DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_exponential_Pinv",f_unn(gsl_cdf_exponential_Pinv),hnd_fnc_nd,P2DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_exponential_Qinv",f_unn(gsl_cdf_exponential_Qinv),hnd_fnc_nd,P2DBLX));
+-# if NCO_GSL_MINOR_VERSION >= 6
++# if NCO_GSL_MINOR_VERSION >= 6 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_exppow_P",f_unn(gsl_cdf_exppow_P),hnd_fnc_nd,P3DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_exppow_Q",f_unn(gsl_cdf_exppow_Q),hnd_fnc_nd,P3DBLX));
+ # endif
+@@ -397,14 +401,14 @@ void gsl_cls::gsl_ini_cdf(void){
+
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_fdist_P",f_unn(gsl_cdf_fdist_P),hnd_fnc_nd,P3DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_fdist_Q",f_unn(gsl_cdf_fdist_Q),hnd_fnc_nd,P3DBLX));
+-# if NCO_GSL_MINOR_VERSION >= 8
++# if NCO_GSL_MINOR_VERSION >= 8 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_fdist_Pinv",f_unn(gsl_cdf_fdist_Pinv),hnd_fnc_nd,P3DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_fdist_Qinv",f_unn(gsl_cdf_fdist_Qinv),hnd_fnc_nd,P3DBLX));
+ # endif // NCO_GSL_MINOR_VERSION < 8
+
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_beta_P",f_unn(gsl_cdf_beta_P),hnd_fnc_nd,P3DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_beta_Q",f_unn(gsl_cdf_beta_Q),hnd_fnc_nd,P3DBLX));
+-# if NCO_GSL_MINOR_VERSION >= 8
++# if NCO_GSL_MINOR_VERSION >= 8 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_beta_Pinv",f_unn(gsl_cdf_beta_Pinv),hnd_fnc_nd,P3DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_cdf_beta_Qinv",f_unn(gsl_cdf_beta_Qinv),hnd_fnc_nd,P3DBLX));
+ # endif // NCO_GSL_MINOR_VERSION < 8
+@@ -474,7 +478,7 @@ void gsl_cls::gsl_ini_ran(void){
+ gpr_vtr.push_back(gpr_cls("gsl_ran_beta_pdf",f_unn(gsl_ran_beta_pdf),hnd_fnc_nd,P3DBLX));
+
+ gpr_vtr.push_back(gpr_cls("gsl_ran_binomial",f_unn(gsl_ran_binomial),hnd_fnc_udrdu));
+-# if NCO_GSL_MINOR_VERSION >= 7
++# if NCO_GSL_MINOR_VERSION >= 7 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_ran_binomial_knuth",f_unn(gsl_ran_binomial_knuth),hnd_fnc_udrdu));
+ # endif
+ gpr_vtr.push_back(gpr_cls("gsl_ran_binomial_tpe",f_unn(gsl_ran_binomial_tpe),hnd_fnc_udrdu));
+@@ -508,14 +512,14 @@ void gsl_cls::gsl_ini_ran(void){
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gamma",f_unn(gsl_ran_gamma),hnd_fnc_rnd,P2DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gamma_int",f_unn(gsl_ran_gamma_int),hnd_fnc_ru));
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gamma_pdf",f_unn(gsl_ran_gamma_pdf),hnd_fnc_nd,P3DBLX));
+-# if NCO_GSL_MINOR_VERSION >= 8
++# if NCO_GSL_MINOR_VERSION >= 8 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gamma_mt",f_unn(gsl_ran_gamma_mt),hnd_fnc_rnd,P2DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gamma_knuth",f_unn(gsl_ran_gamma_knuth),hnd_fnc_rnd,P2DBLX));
+ # endif // NCO_GSL_MINOR_VERSION < 8
+
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gaussian",f_unn(gsl_ran_gaussian),hnd_fnc_rnd,P1DBLX));
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gaussian_ratio_method",f_unn(gsl_ran_gaussian_ratio_method),hnd_fnc_rnd,P1DBLX));
+-# if NCO_GSL_MINOR_VERSION >= 8
++# if NCO_GSL_MINOR_VERSION >= 8 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gaussian_ziggurat",f_unn(gsl_ran_gaussian_ziggurat),hnd_fnc_rnd,P1DBLX));
+ # endif // NCO_GSL_MINOR_VERSION < 8
+ gpr_vtr.push_back(gpr_cls("gsl_ran_gaussian_pdf",f_unn(gsl_ran_gaussian_pdf),hnd_fnc_nd,P2DBLX));
+@@ -747,7 +751,7 @@ void gsl_cls::gsl_ini_stats(void){
+ }
+
+ gpr_vtr.push_back(gpr_cls("gsl_stats_covariance",f_unn(ncap_void),hnd_fnc_stat4,PS_COV));
+-# if NCO_GSL_MINOR_VERSION >= 10
++# if NCO_GSL_MINOR_VERSION >= 10 || NCO_GSL_MAJOR_VERSION >= 2
+ gpr_vtr.push_back(gpr_cls("gsl_stats_correlation",f_unn(ncap_void),hnd_fnc_stat4,PS_COR));
+ # endif // NCO_GSL_MINOR_VERSION < 10
+ gpr_vtr.push_back(gpr_cls("gsl_stats_pvariance",f_unn(ncap_void),hnd_fnc_stat4,PS_PVAR));
+@@ -3620,7 +3624,7 @@ var_sct *gsl_cls::hnd_fnc_stat4(bool& is
+ default: nco_dfl_case_nc_type_err(); break;
+ } break;
+
+-# if NCO_GSL_MINOR_VERSION >= 10
++# if NCO_GSL_MINOR_VERSION >= 10 || NCO_GSL_MAJOR_VERSION >= 2
+ case PS_COR:
+ switch(var_arr[0]->type){
+ case NC_FLOAT: r_val=gsl_stats_float_correlation( var_arr[0]->val.fp,d1_srd,var_arr[3]->val.fp,d2_srd,sz1 );break;
+--- a/src/nco++/fmc_gsl_cls.hh
++++ b/src/nco++/fmc_gsl_cls.hh
+@@ -40,6 +40,10 @@
+ #include "ncap2_utl.hh"
+ #include "vtl_cls.hh"
+
++#ifndef NCO_GSL_MAJOR_VERSION
++# define NCO_GSL_MAJOR_VERSION 1
++#endif // NCO_GSL_MAJOR_VERSION
++
+ #ifndef NCO_GSL_MINOR_VERSION
+ #ifdef _MSC_VER
+ # define NCO_GSL_MINOR_VERSION 7
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..3afcd2c
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+gsl-2.0.patch
--
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