[pysal] branch master updated (bfffc53 -> 6062981)

Sebastiaan Couwenberg sebastic at moszumanska.debian.org
Sat Jun 11 20:44:23 UTC 2016


This is an automated email from the git hooks/post-receive script.

sebastic pushed a change to branch master
in repository pysal.

      from  bfffc53   Merge tag 'upstream/1.10+dfsg'
       new  bf359a4   Update version in changelog.
       new  7a4e0c8   Update mangle rules in watch file.
       new  4afdcd9   Don't exclude examples from upstream tarball.
       new  b4b8900   Imported Upstream version 1.11.0
       new  b37e648   Imported Upstream version 1.11.1
       new  776b952   Imported Upstream version 1.11.2
       new  701dd56   Merge tag 'upstream/1.11.2'
       new  6b4cd76   Update version in changelog.
       new  4ad4007   Reorder (build) dependencies.
       new  0675760   Override dh_python2 to call dh_numpy too.
       new  ff8cdd0   Update Vcs-* fields to use HTTPS.
       new  a182aee   Add Python 3 package.
       new  d20e5bd   Add patch to fix unusual interpreter path.
       new  96f380f   Update copyright holders.
       new  371640f   Add upstream metadata.
       new  3fa8322   Bump Standards-Version to 3.9.8, no changes.
       new  6062981   Add shapely to build dependencies for wkb test, add scipy to dependencies.

The 17 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .github/CONTRIBUTING.md                            |     2 +
 .github/ISSUE_TEMPLATE.md                          |    30 +
 .github/PULL_REQUEST_TEMPLATE.md                   |    12 +
 .gitignore                                         |   103 +
 .travis.yml                                        |    29 +-
 .travis_testing.sh                                 |     5 +
 CHANGELOG.txt                                      |  2530 +
 README.md                                          |   106 -
 README.rst                                         |   139 +
 THANKS.txt                                         |     1 +
 debian/changelog                                   |     2 +-
 debian/control                                     |    75 +-
 debian/copyright                                   |    13 +-
 debian/patches/series                              |     1 +
 debian/patches/unusual-interpreter.patch           |    11 +
 debian/rules                                       |     9 +-
 debian/upstream/metadata                           |     6 +
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 doc/source/conf.py                                 |    57 +-
 doc/source/developers/guidelines.rst               |    38 +-
 doc/source/developers/projects.rst                 |     5 +-
 doc/source/developers/py3k.rst                     |   107 +-
 doc/source/developers/release.rst                  |    55 +-
 doc/source/index.rst                               |     4 +-
 doc/source/library/contrib/index.rst               |    20 +-
 doc/source/library/spreg/index.rst                 |     1 +
 doc/source/references.rst                          |     1 +
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 pysal/COPYING                                      |     2 +-
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 pysal/cg/kdtree.py                                 |    74 +-
 pysal/cg/shapes.py                                 |    14 +-
 pysal/cg/tests/test_geoJSON.py                     |    28 +
 pysal/common.py                                    |    13 +
 pysal/contrib/{README => README.rst}               |    38 +-
 pysal/contrib/clusterpy/__init__.py                |     1 +
 pysal/contrib/clusterpy/clusterpy.ipynb            |  6735 +-
 pysal/contrib/clusterpy/clusterpy_ext.py           |    52 +-
 pysal/contrib/githooks/pre-commit                  |     6 +
 pysal/contrib/handler/Explaining the Handler.ipynb |   800 +
 pysal/contrib/handler/__init__.py                  |     1 +
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 .../handler}/tests/test_diagnostics.py             |    11 +-
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 pysal/contrib/handler/tests/test_error_sp.py       |   178 +
 .../handler}/tests/test_error_sp_regimes.py        |    36 +-
 .../contrib/handler/tests/test_error_sp_sparse.py  |   189 +
 .../handler/tests/test_error_spet.py}              |   200 +-
 .../handler/tests/test_error_spet_regimes.py}      |    12 +-
 .../handler/tests/test_error_spet_sparse.py}       |   204 +-
 .../handler/tests/test_error_spom.py}              |   157 +-
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 pysal/contrib/handler/tests/test_probit.py         |    62 +
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 pysal/core/IOHandlers/arcgis_swm.py                |     4 +-
 pysal/core/IOHandlers/csvWrapper.py                |     5 +-
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 pysal/core/IOHandlers/pyShpIO.py                   |     6 +-
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 pysal/core/IOHandlers/tests/test_pyDbfIO.py        |    50 +-
 pysal/core/IOHandlers/wk1.py                       |     2 +-
 pysal/core/Tables.py                               |    49 +-
 pysal/core/util/shapefile.py                       |    32 +-
 pysal/core/util/tests/test_shapefile.py            |    27 +-
 pysal/core/util/wkb.py                             |   230 +
 pysal/core/util/wkt.py                             |     8 -
 pysal/esda/gamma.py                                |    20 +-
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 pysal/spreg/tests/test_diagnostics_tsls.py         |    10 +-
 pysal/spreg/tests/test_error_sp.py                 |   192 +-
 pysal/spreg/tests/test_error_sp_het.py             |   207 +-
 pysal/spreg/tests/test_error_sp_het_regimes.py     |   161 +-
 pysal/spreg/tests/test_error_sp_het_sparse.py      |   207 +-
 pysal/spreg/tests/test_error_sp_hom.py             |   229 +-
 pysal/spreg/tests/test_error_sp_hom_regimes.py     |   165 +-
 pysal/spreg/tests/test_error_sp_regimes.py         |   169 +-
 pysal/spreg/tests/test_error_sp_sparse.py          |   196 +-
 pysal/spreg/tests/test_ml_error.py                 |    40 +-
 pysal/spreg/tests/test_ml_error_regimes.py         |    61 +-
 pysal/spreg/tests/test_ml_lag.py                   |    35 +-
 pysal/spreg/tests/test_ml_lag_regimes.py           |    53 +-
 pysal/spreg/tests/test_ols.py                      |   119 +-
 pysal/spreg/tests/test_ols_regimes.py              |   108 +-
 pysal/spreg/tests/test_ols_sparse.py               |   105 +-
 pysal/spreg/tests/test_probit.py                   |    69 +-
 pysal/spreg/tests/test_sur.py                      |   172 +
 pysal/spreg/tests/test_sur_error.py                |   123 +
 pysal/spreg/tests/test_sur_lag.py                  |   176 +
 pysal/spreg/tests/test_twosls.py                   |   117 +-
 pysal/spreg/tests/test_twosls_regimes.py           |    86 +-
 pysal/spreg/tests/test_twosls_sp.py                |   141 +-
 pysal/spreg/tests/test_twosls_sp_regimes.py        |   144 +-
 pysal/spreg/tests/test_twosls_sp_sparse.py         |   144 +-
 pysal/spreg/tests/test_twosls_sparse.py            |   121 +-
 pysal/spreg/twosls.py                              |    17 +-
 pysal/spreg/user_output.py                         |     6 +-
 pysal/spreg/utils.py                               |   132 +-
 pysal/version.py                                   |     4 +-
 pysal/weights/Contiguity.py                        |     8 +-
 pysal/weights/Distance.py                          |    74 +-
 pysal/weights/_contW_binning.py                    |    10 +-
 pysal/weights/spatial_lag.py                       |   117 +-
 pysal/weights/tests/test_Distance.py               |    69 +-
 pysal/weights/tests/test_Wsets.py                  |    28 +-
 pysal/weights/tests/test_spatial_lag.py            |    28 +-
 pysal/weights/tests/test_user.py                   |    42 +-
 pysal/weights/tests/test_util.py                   |     7 +
 pysal/weights/tests/test_weights.py                |    69 +-
 pysal/weights/user.py                              |    17 +-
 pysal/weights/util.py                              |   101 +-
 pysal/weights/weights.py                           |    12 +-
 setup.py                                           |    61 +-
 tools/bump.py                                      |    84 +
 tools/spregsync                                    |    47 +
 378 files changed, 116808 insertions(+), 8946 deletions(-)
 create mode 100644 .github/CONTRIBUTING.md
 create mode 100644 .github/ISSUE_TEMPLATE.md
 create mode 100644 .github/PULL_REQUEST_TEMPLATE.md
 create mode 100644 .gitignore
 create mode 100644 .travis_testing.sh
 delete mode 100644 README.md
 create mode 100644 README.rst
 create mode 100644 debian/patches/series
 create mode 100644 debian/patches/unusual-interpreter.patch
 create mode 100644 debian/upstream/metadata
 create mode 100644 figs/lisamaps.png
 create mode 100644 figs/lisamaps7.png
 rename pysal/contrib/{README => README.rst} (62%)
 create mode 100755 pysal/contrib/githooks/pre-commit
 create mode 100644 pysal/contrib/handler/Explaining the Handler.ipynb
 create mode 100644 pysal/contrib/handler/__init__.py
 create mode 100644 pysal/contrib/handler/handler.py
 create mode 100644 pysal/contrib/handler/registry.py
 copy pysal/{spreg => contrib/handler}/tests/test_diagnostics.py (94%)
 copy pysal/{spreg => contrib/handler}/tests/test_diagnostics_sp.py (95%)
 copy pysal/{spreg => contrib/handler}/tests/test_diagnostics_tsls.py (86%)
 create mode 100644 pysal/contrib/handler/tests/test_error_sp.py
 copy pysal/{spreg => contrib/handler}/tests/test_error_sp_regimes.py (89%)
 create mode 100644 pysal/contrib/handler/tests/test_error_sp_sparse.py
 copy pysal/{spreg/tests/test_error_sp_het.py => contrib/handler/tests/test_error_spet.py} (52%)
 copy pysal/{spreg/tests/test_error_sp_het_regimes.py => contrib/handler/tests/test_error_spet_regimes.py} (96%)
 copy pysal/{spreg/tests/test_error_sp_het_sparse.py => contrib/handler/tests/test_error_spet_sparse.py} (52%)
 copy pysal/{spreg/tests/test_error_sp_hom.py => contrib/handler/tests/test_error_spom.py} (51%)
 copy pysal/{spreg/tests/test_error_sp_hom_regimes.py => contrib/handler/tests/test_error_spom_regimes.py} (87%)
 copy pysal/{spreg/tests/test_error_sp_hom_sparse.py => contrib/handler/tests/test_error_spom_sparse.py} (51%)
 copy pysal/{spreg => contrib/handler}/tests/test_ml_error.py (66%)
 copy pysal/{spreg => contrib/handler}/tests/test_ml_error_regimes.py (71%)
 copy pysal/{spreg => contrib/handler}/tests/test_ml_lag.py (94%)
 copy pysal/{spreg => contrib/handler}/tests/test_ml_lag_regimes.py (94%)
 copy pysal/{spreg/tests/test_ols_sparse.py => contrib/handler/tests/test_ols.py} (82%)
 copy pysal/{spreg => contrib/handler}/tests/test_ols_regimes.py (96%)
 copy pysal/{spreg => contrib/handler}/tests/test_ols_sparse.py (86%)
 create mode 100644 pysal/contrib/handler/tests/test_probit.py
 copy pysal/{spreg => contrib/handler}/tests/test_twosls.py (59%)
 copy pysal/{spreg => contrib/handler}/tests/test_twosls_regimes.py (98%)
 copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp.py (55%)
 copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp_regimes.py (98%)
 copy pysal/{spreg => contrib/handler}/tests/test_twosls_sp_sparse.py (55%)
 copy pysal/{spreg => contrib/handler}/tests/test_twosls_sparse.py (59%)
 create mode 100644 pysal/contrib/pdutilities/file_utilities.py
 create mode 100644 pysal/contrib/pdutilities/shp_utilities.py
 create mode 100644 pysal/core/util/wkb.py
 create mode 100644 pysal/examples/10740/10740.dbf
 create mode 100644 pysal/examples/10740/10740.shp
 create mode 100644 pysal/examples/10740/10740.shx
 create mode 100644 pysal/examples/10740/10740_queen.gal
 create mode 100644 pysal/examples/10740/10740_rook.gal
 create mode 100644 pysal/examples/10740/README.md
 create mode 100644 pysal/examples/Line/Line.dbf
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 create mode 100644 pysal/examples/Line/Line.shp
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 create mode 100644 pysal/examples/Point/Point.shp
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 create mode 100644 pysal/examples/Polygon/Polygon.prj
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 create mode 100644 pysal/examples/Polygon/README.md
 create mode 100644 pysal/examples/README.txt
 create mode 100644 pysal/examples/__init__.py
 create mode 100644 pysal/examples/arcgis/README.md
 create mode 100644 pysal/examples/arcgis/arcgis_ohio.dbf
 create mode 100644 pysal/examples/arcgis/arcgis_txt.txt
 create mode 100644 pysal/examples/baltim/README.md
 create mode 100644 pysal/examples/baltim/baltim.dbf
 create mode 100644 pysal/examples/baltim/baltim.shp
 copy pysal/{contrib/network/crimes.shx => examples/baltim/baltim.shx} (71%)
 create mode 100644 pysal/examples/baltim/baltim.tri.k12.kwt
 create mode 100644 pysal/examples/baltim/baltim_k4.gwt
 create mode 100644 pysal/examples/baltim/baltim_q.gal
 create mode 100644 pysal/examples/baltim/baltimore.geojson
 create mode 100644 pysal/examples/book/README.md
 create mode 100644 pysal/examples/book/book.gal
 create mode 100644 pysal/examples/book/book.txt
 create mode 100644 pysal/examples/burkitt/README.md
 create mode 100644 pysal/examples/burkitt/burkitt.dbf
 create mode 100644 pysal/examples/burkitt/burkitt.shp
 copy pysal/{contrib/network/crimes.shx => examples/burkitt/burkitt.shx} (64%)
 create mode 100644 pysal/examples/calemp/README.md
 create mode 100644 pysal/examples/calemp/calempdensity.csv
 create mode 100644 pysal/examples/chicago/Chicago77.dbf
 create mode 100644 pysal/examples/chicago/Chicago77.shp
 create mode 100644 pysal/examples/chicago/Chicago77.shx
 create mode 100644 pysal/examples/chicago/README.md
 create mode 100644 pysal/examples/columbus/columbus.dbf
 create mode 100644 pysal/examples/columbus/columbus.gal
 create mode 100644 pysal/examples/columbus/columbus.html
 create mode 100644 pysal/examples/columbus/columbus.json
 create mode 100644 pysal/examples/columbus/columbus.shp
 create mode 100644 pysal/examples/columbus/columbus.shx
 create mode 100644 pysal/examples/desmith/README.md
 create mode 100644 pysal/examples/desmith/desmith.gal
 create mode 100644 pysal/examples/desmith/desmith.txt
 copy doc/source/users/tutorials/examples.rst => pysal/examples/examples.txt (98%)
 create mode 100644 pysal/examples/geodanet/README.md
 copy pysal/{contrib/network => examples/geodanet}/crimes.dbf (100%)
 create mode 100644 pysal/examples/geodanet/crimes.prj
 create mode 100644 pysal/examples/geodanet/crimes.sbn
 create mode 100644 pysal/examples/geodanet/crimes.sbx
 copy pysal/{contrib/network => examples/geodanet}/crimes.shp (100%)
 create mode 100644 pysal/examples/geodanet/crimes.shp.xml
 copy pysal/{contrib/network => examples/geodanet}/crimes.shx (100%)
 create mode 100644 pysal/examples/geodanet/schools.dbf
 create mode 100644 pysal/examples/geodanet/schools.prj
 create mode 100644 pysal/examples/geodanet/schools.sbn
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 create mode 100644 pysal/examples/geodanet/schools.shp
 create mode 100644 pysal/examples/geodanet/schools.shp.xml
 create mode 100644 pysal/examples/geodanet/schools.shx
 copy pysal/{contrib/network => examples/geodanet}/streets.dbf (100%)
 create mode 100644 pysal/examples/geodanet/streets.prj
 create mode 100644 pysal/examples/geodanet/streets.sbn
 create mode 100644 pysal/examples/geodanet/streets.sbx
 copy pysal/{contrib/network => examples/geodanet}/streets.shp (100%)
 copy pysal/{contrib/network => examples/geodanet}/streets.shx (100%)
 create mode 100644 pysal/examples/juvenile/README.md
 create mode 100644 pysal/examples/juvenile/juvenile.dbf
 create mode 100644 pysal/examples/juvenile/juvenile.gwt
 create mode 100644 pysal/examples/juvenile/juvenile.shp
 copy pysal/{contrib/network/crimes.shx => examples/juvenile/juvenile.shx} (57%)
 create mode 100644 pysal/examples/mexico/README.md
 create mode 100644 pysal/examples/mexico/mexico.csv
 create mode 100644 pysal/examples/mexico/mexico.gal
 create mode 100644 pysal/examples/nat/NAT.dbf
 create mode 100644 pysal/examples/nat/NAT.shp
 create mode 100644 pysal/examples/nat/NAT.shx
 create mode 100644 pysal/examples/nat/nat.geojson
 create mode 100644 pysal/examples/nat/nat_queen.gal
 create mode 100644 pysal/examples/nat/nat_queen_old.gal
 create mode 100644 pysal/examples/nat/nat_trian_k20.kwt
 create mode 100644 pysal/examples/nat/natregimes.dbf
 create mode 100644 pysal/examples/nat/natregimes.shp
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 create mode 100644 pysal/examples/networks/eberly_net.dbf
 copy pysal/{contrib/spatialnet/eberly.shp => examples/networks/eberly_net.shp} (100%)
 copy pysal/{contrib/spatialnet/eberly.shx => examples/networks/eberly_net.shx} (100%)
 create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.dbf
 create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.shp
 create mode 100644 pysal/examples/networks/eberly_net_pts_offnetwork.shx
 create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.dbf
 create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.shp
 create mode 100644 pysal/examples/networks/eberly_net_pts_onnetwork.shx
 create mode 100644 pysal/examples/networks/nonplanarsegments.dbf
 create mode 100644 pysal/examples/networks/nonplanarsegments.prj
 create mode 100644 pysal/examples/networks/nonplanarsegments.qpj
 create mode 100644 pysal/examples/networks/nonplanarsegments.shp
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 create mode 100644 pysal/examples/newHaven/new_haven_merged.dbf
 create mode 100644 pysal/examples/newHaven/new_haven_merged.shp
 create mode 100644 pysal/examples/newHaven/new_haven_merged.shx
 create mode 100644 pysal/examples/newHaven/newhaven_nework.dbf
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 create mode 100644 pysal/examples/newHaven/newhaven_nework.shx
 create mode 100644 pysal/examples/sacramento2/sacramentot2.dbf
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 create mode 100644 pysal/examples/sacramento2/sacramentot2.sbn
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 create mode 100644 pysal/examples/sids2/README.md
 create mode 100644 pysal/examples/sids2/sids2.dbf
 create mode 100644 pysal/examples/sids2/sids2.gal
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 create mode 100644 pysal/examples/sids2/sids2.shp
 create mode 100644 pysal/examples/sids2/sids2.shx
 create mode 100644 pysal/examples/sids2/sids2.swm
 create mode 100644 pysal/examples/snow_maps/SohoPeople.dbf
 create mode 100644 pysal/examples/snow_maps/SohoPeople.prj
 create mode 100644 pysal/examples/snow_maps/SohoPeople.sbn
 create mode 100644 pysal/examples/snow_maps/SohoPeople.sbx
 create mode 100644 pysal/examples/snow_maps/SohoPeople.shp
 copy pysal/{contrib/network/crimes.shx => examples/snow_maps/SohoPeople.shx} (86%)
 create mode 100644 pysal/examples/snow_maps/SohoWater.dbf
 create mode 100644 pysal/examples/snow_maps/SohoWater.prj
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 create mode 100644 pysal/examples/snow_maps/Soho_Network.dbf
 create mode 100644 pysal/examples/snow_maps/Soho_Network.prj
 create mode 100644 pysal/examples/snow_maps/Soho_Network.sbn
 create mode 100644 pysal/examples/snow_maps/Soho_Network.sbx
 create mode 100644 pysal/examples/snow_maps/Soho_Network.shp
 create mode 100644 pysal/examples/snow_maps/Soho_Network.shx
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 create mode 100644 pysal/examples/south/south.shp
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 create mode 100644 pysal/examples/stl/stl_hom.txt
 create mode 100644 pysal/examples/stl/stl_hom.wkt
 create mode 100644 pysal/examples/stl/stl_hom_rook.gal
 create mode 100644 pysal/examples/street_net_pts/street_net_pts.dbf
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 create mode 100644 pysal/examples/street_net_pts/street_net_pts.qpj
 create mode 100644 pysal/examples/street_net_pts/street_net_pts.shp
 copy pysal/{contrib/network/crimes.shx => examples/street_net_pts/street_net_pts.shx} (92%)
 create mode 100644 pysal/examples/taz/taz.dbf
 create mode 100644 pysal/examples/taz/taz.shp
 create mode 100644 pysal/examples/taz/taz.shx
 create mode 100644 pysal/examples/test_examples.py
 create mode 100644 pysal/examples/us_income/README.md
 create mode 100644 pysal/examples/us_income/spi_download.csv
 create mode 100644 pysal/examples/us_income/states48.gal
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 create mode 100644 pysal/examples/us_income/usjoin.csv
 create mode 100644 pysal/examples/virginia/README.md
 create mode 100644 pysal/examples/virginia/virginia.dbf
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 create mode 100644 pysal/examples/virginia/virginia.json
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 create mode 100644 pysal/examples/virginia/virginia.shp
 create mode 100644 pysal/examples/virginia/virginia.shx
 create mode 100644 pysal/examples/virginia/virginia_queen.dat
 create mode 100644 pysal/examples/virginia/virginia_queen.dbf
 create mode 100644 pysal/examples/virginia/virginia_queen.gal
 create mode 100644 pysal/examples/virginia/virginia_queen.mat
 create mode 100644 pysal/examples/virginia/virginia_queen.mtx
 create mode 100644 pysal/examples/virginia/virginia_queen.swm
 create mode 100644 pysal/examples/virginia/virginia_queen.txt
 create mode 100644 pysal/examples/virginia/virginia_queen.wk1
 create mode 100644 pysal/examples/virginia/virginia_rook.gal
 create mode 100644 pysal/examples/wmat/geobugs_scot
 create mode 100755 pysal/examples/wmat/lattice10x10.shp
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 create mode 100644 pysal/examples/wmat/spat-sym-us.mat
 create mode 100644 pysal/examples/wmat/spat-sym-us.wk1
 create mode 100644 pysal/examples/wmat/spdep_listw2WB_columbus
 create mode 100644 pysal/examples/wmat/stata_full.txt
 create mode 100644 pysal/examples/wmat/stata_sparse.txt
 create mode 100644 pysal/examples/wmat/wmat.dat
 create mode 100644 pysal/examples/wmat/wmat.mtx
 create mode 100644 pysal/spreg/diagnostics_sur.py
 create mode 100644 pysal/spreg/opt.py
 create mode 100644 pysal/spreg/optional_imports.ipynb
 create mode 100644 pysal/spreg/sur.py
 create mode 100644 pysal/spreg/sur_error.py
 create mode 100644 pysal/spreg/sur_lag.py
 create mode 100644 pysal/spreg/sur_utils.py
 create mode 100644 pysal/spreg/tests/test_sur.py
 create mode 100644 pysal/spreg/tests/test_sur_error.py
 create mode 100644 pysal/spreg/tests/test_sur_lag.py
 create mode 100644 tools/bump.py
 create mode 100755 tools/spregsync

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