[pysal] 07/17: Merge tag 'upstream/1.11.2'
Sebastiaan Couwenberg
sebastic at moszumanska.debian.org
Sat Jun 11 20:44:28 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastic pushed a commit to branch master
in repository pysal.
commit 701dd56451b5b54659818b2657e920297ff256be
Merge: 4afdcd9 776b952
Author: Bas Couwenberg <sebastic at xs4all.nl>
Date: Sat Jun 11 17:15:51 2016 +0200
Merge tag 'upstream/1.11.2'
Upstream version 1.11.2
Conflicts:
.gitignore
.github/CONTRIBUTING.md | 2 +
.github/ISSUE_TEMPLATE.md | 30 +
.github/PULL_REQUEST_TEMPLATE.md | 12 +
.gitignore | 103 +
.travis.yml | 29 +-
.travis_testing.sh | 5 +
CHANGELOG.txt | 2530 +
README.md | 106 -
README.rst | 139 +
THANKS.txt | 1 +
doc/source/conf.py | 57 +-
doc/source/developers/guidelines.rst | 38 +-
doc/source/developers/projects.rst | 5 +-
doc/source/developers/py3k.rst | 107 +-
doc/source/developers/release.rst | 55 +-
doc/source/index.rst | 4 +-
doc/source/library/contrib/index.rst | 20 +-
doc/source/library/spreg/index.rst | 1 +
doc/source/references.rst | 1 +
doc/source/users/installation.rst | 2 +-
figs/lisamaps.png | Bin 0 -> 501034 bytes
figs/lisamaps7.png | Bin 0 -> 501034 bytes
pysal/COPYING | 2 +-
pysal/__init__.py | 24 +-
pysal/cg/kdtree.py | 74 +-
pysal/cg/shapes.py | 14 +-
pysal/cg/tests/test_geoJSON.py | 28 +
pysal/common.py | 13 +
pysal/contrib/{README => README.rst} | 38 +-
pysal/contrib/clusterpy/__init__.py | 1 +
pysal/contrib/clusterpy/clusterpy.ipynb | 6735 +-
pysal/contrib/clusterpy/clusterpy_ext.py | 52 +-
pysal/contrib/githooks/pre-commit | 6 +
pysal/contrib/handler/Explaining the Handler.ipynb | 800 +
pysal/contrib/handler/__init__.py | 1 +
pysal/contrib/handler/handler.py | 146 +
pysal/contrib/handler/registry.py | 58 +
.../handler}/tests/test_diagnostics.py | 11 +-
.../handler}/tests/test_diagnostics_sp.py | 11 +-
.../handler}/tests/test_diagnostics_tsls.py | 11 +-
pysal/contrib/handler/tests/test_error_sp.py | 178 +
.../handler}/tests/test_error_sp_regimes.py | 36 +-
.../contrib/handler/tests/test_error_sp_sparse.py | 189 +
.../handler/tests/test_error_spet.py} | 200 +-
.../handler/tests/test_error_spet_regimes.py} | 12 +-
.../handler/tests/test_error_spet_sparse.py} | 204 +-
.../handler/tests/test_error_spom.py} | 157 +-
.../handler/tests/test_error_spom_regimes.py} | 37 +-
.../handler/tests/test_error_spom_sparse.py | 183 +
.../handler}/tests/test_ml_error.py | 43 +-
.../handler}/tests/test_ml_error_regimes.py | 66 +-
.../handler}/tests/test_ml_lag.py | 7 +-
.../handler}/tests/test_ml_lag_regimes.py | 10 +-
.../handler/tests/test_ols.py} | 30 +-
.../handler}/tests/test_ols_regimes.py | 10 +-
.../handler}/tests/test_ols_sparse.py | 22 +-
pysal/contrib/handler/tests/test_probit.py | 62 +
.../handler}/tests/test_twosls.py | 102 +-
.../handler}/tests/test_twosls_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp.py | 165 +-
.../handler}/tests/test_twosls_sp_regimes.py | 10 +-
.../handler}/tests/test_twosls_sp_sparse.py | 166 +-
.../handler}/tests/test_twosls_sparse.py | 103 +-
pysal/contrib/pdutilities/__init__.py | 4 +
pysal/contrib/pdutilities/dbf_utilities.py | 4 -
pysal/contrib/pdutilities/file_utilities.py | 65 +
pysal/contrib/pdutilities/shp_utilities.py | 21 +
pysal/contrib/viz/folium_mapping.ipynb | 2116 +-
pysal/contrib/viz/folium_mapping.py | 14 +-
pysal/contrib/viz/mapping.py | 63 +-
pysal/contrib/viz/mapping_guide.ipynb | 642 +-
pysal/core/IOHandlers/arcgis_swm.py | 4 +-
pysal/core/IOHandlers/csvWrapper.py | 5 +-
pysal/core/IOHandlers/pyDbfIO.py | 35 +-
pysal/core/IOHandlers/pyShpIO.py | 6 +-
pysal/core/IOHandlers/tests/test_csvWrapper.py | 10 +-
pysal/core/IOHandlers/tests/test_pyDbfIO.py | 50 +-
pysal/core/IOHandlers/wk1.py | 2 +-
pysal/core/Tables.py | 49 +-
pysal/core/util/shapefile.py | 32 +-
pysal/core/util/tests/test_shapefile.py | 27 +-
pysal/core/util/wkb.py | 230 +
pysal/core/util/wkt.py | 8 -
pysal/esda/gamma.py | 20 +-
pysal/esda/mapclassify.py | 538 +-
pysal/esda/moran.py | 266 +-
pysal/esda/smoothing.py | 16 +-
pysal/esda/tests/test_mapclassify.py | 66 +-
pysal/esda/tests/test_moran.py | 32 +-
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pysal/examples/10740/10740_queen.gal | 391 +
pysal/examples/10740/10740_rook.gal | 391 +
pysal/examples/10740/README.md | 13 +
pysal/examples/Line/Line.dbf | Bin 0 -> 621 bytes
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pysal/examples/Point/Point.dbf | Bin 0 -> 1236 bytes
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pysal/examples/Polygon/README.md | 7 +
pysal/examples/README.txt | 5 +
pysal/examples/__init__.py | 77 +
pysal/examples/arcgis/README.md | 7 +
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pysal/examples/baltim/baltim_q.gal | 423 +
pysal/examples/baltim/baltimore.geojson | 218 +
pysal/examples/book/README.md | 10 +
pysal/examples/book/book.gal | 33 +
pysal/examples/book/book.txt | 18 +
pysal/examples/burkitt/README.md | 11 +
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pysal/examples/calemp/README.md | 15 +
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pysal/examples/chicago/README.md | 11 +
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pysal/examples/columbus/columbus.html | 132 +
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pysal/examples/desmith/README.md | 13 +
pysal/examples/desmith/desmith.gal | 21 +
pysal/examples/desmith/desmith.txt | 12 +
pysal/examples/examples.txt | 141 +
pysal/examples/geodanet/README.md | 26 +
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pysal/examples/geodanet/crimes.prj | 1 +
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pysal/examples/mexico/README.md | 15 +
pysal/examples/mexico/mexico.csv | 33 +
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pysal/examples/nat/nat.geojson | 3092 +
pysal/examples/nat/nat_queen.gal | 6171 ++
pysal/examples/nat/nat_queen_old.gal | 6171 ++
pysal/examples/nat/nat_trian_k20.kwt | 64786 +++++++++++++++++++
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pysal/examples/networks/eberly_net.dbf | Bin 0 -> 1348 bytes
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pysal/examples/south/south_q.gal | 2825 +
pysal/examples/south/south_queen.gal | 2825 +
pysal/examples/stl/stl.gal | 157 +
pysal/examples/stl/stl_hom.csv | 79 +
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pysal/examples/stl/stl_hom.txt | 80 +
pysal/examples/stl/stl_hom.wkt | 78 +
pysal/examples/stl/stl_hom_rook.gal | 157 +
pysal/examples/street_net_pts/street_net_pts.dbf | Bin 0 -> 3398 bytes
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pysal/examples/test_examples.py | 21 +
pysal/examples/us_income/README.md | 10 +
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pysal/examples/us_income/states48.gal | 97 +
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pysal/examples/us_income/usjoin.csv | 49 +
pysal/examples/virginia/README.md | 10 +
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pysal/examples/virginia/virginia.gal | 273 +
pysal/examples/virginia/virginia.json | 143 +
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pysal/examples/virginia/virginia_queen.gal | 273 +
pysal/examples/virginia/virginia_queen.mat | Bin 0 -> 148160 bytes
pysal/examples/virginia/virginia_queen.mtx | 589 +
pysal/examples/virginia/virginia_queen.swm | Bin 0 -> 9232 bytes
pysal/examples/virginia/virginia_queen.txt | 137 +
pysal/examples/virginia/virginia_queen.wk1 | Bin 0 -> 314585 bytes
pysal/examples/virginia/virginia_rook.gal | 273 +
pysal/examples/wmat/geobugs_scot | 66 +
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pysal/examples/wmat/lattice10x10.shx | Bin 0 -> 900 bytes
pysal/examples/wmat/ohio.swm | Bin 0 -> 6978 bytes
pysal/examples/wmat/rook31.dbf | Bin 0 -> 161 bytes
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pysal/examples/wmat/spat-sym-us.mat | Bin 0 -> 416 bytes
pysal/examples/wmat/spat-sym-us.wk1 | Bin 0 -> 2221 bytes
pysal/examples/wmat/spdep_listw2WB_columbus | 59 +
pysal/examples/wmat/stata_full.txt | 57 +
pysal/examples/wmat/stata_sparse.txt | 57 +
pysal/examples/wmat/wmat.dat | 232 +
pysal/examples/wmat/wmat.mtx | 237 +
pysal/meta/wmd.py | 80 +-
pysal/network/tests/test_network.py | 5 +-
pysal/region/maxp.py | 26 +-
pysal/region/tests/test_maxp.py | 16 +-
pysal/spatial_dynamics/interaction.py | 4 +-
pysal/spatial_dynamics/markov.py | 12 +-
pysal/spatial_dynamics/tests/test_markov.py | 11 +-
pysal/spreg/__init__.py | 3 +
pysal/spreg/diagnostics.py | 4 +-
pysal/spreg/diagnostics_sur.py | 221 +
pysal/spreg/ml_error.py | 83 +-
pysal/spreg/ml_error_regimes.py | 5 +-
pysal/spreg/ml_lag.py | 72 +-
pysal/spreg/ml_lag_regimes.py | 3 +
pysal/spreg/ols.py | 7 +-
pysal/spreg/opt.py | 92 +
pysal/spreg/optional_imports.ipynb | 278 +
pysal/spreg/probit.py | 322 +-
pysal/spreg/regimes.py | 6 +-
pysal/spreg/summary_output.py | 284 +-
pysal/spreg/sur.py | 697 +
pysal/spreg/sur_error.py | 549 +
pysal/spreg/sur_lag.py | 366 +
pysal/spreg/sur_utils.py | 363 +
pysal/spreg/tests/test_diagnostics.py | 52 +-
pysal/spreg/tests/test_diagnostics_sp.py | 44 +-
pysal/spreg/tests/test_diagnostics_tsls.py | 10 +-
pysal/spreg/tests/test_error_sp.py | 192 +-
pysal/spreg/tests/test_error_sp_het.py | 207 +-
pysal/spreg/tests/test_error_sp_het_regimes.py | 161 +-
pysal/spreg/tests/test_error_sp_het_sparse.py | 207 +-
pysal/spreg/tests/test_error_sp_hom.py | 229 +-
pysal/spreg/tests/test_error_sp_hom_regimes.py | 165 +-
pysal/spreg/tests/test_error_sp_regimes.py | 169 +-
pysal/spreg/tests/test_error_sp_sparse.py | 196 +-
pysal/spreg/tests/test_ml_error.py | 40 +-
pysal/spreg/tests/test_ml_error_regimes.py | 61 +-
pysal/spreg/tests/test_ml_lag.py | 35 +-
pysal/spreg/tests/test_ml_lag_regimes.py | 53 +-
pysal/spreg/tests/test_ols.py | 119 +-
pysal/spreg/tests/test_ols_regimes.py | 108 +-
pysal/spreg/tests/test_ols_sparse.py | 105 +-
pysal/spreg/tests/test_probit.py | 69 +-
pysal/spreg/tests/test_sur.py | 172 +
pysal/spreg/tests/test_sur_error.py | 123 +
pysal/spreg/tests/test_sur_lag.py | 176 +
pysal/spreg/tests/test_twosls.py | 117 +-
pysal/spreg/tests/test_twosls_regimes.py | 86 +-
pysal/spreg/tests/test_twosls_sp.py | 141 +-
pysal/spreg/tests/test_twosls_sp_regimes.py | 144 +-
pysal/spreg/tests/test_twosls_sp_sparse.py | 144 +-
pysal/spreg/tests/test_twosls_sparse.py | 121 +-
pysal/spreg/twosls.py | 17 +-
pysal/spreg/user_output.py | 6 +-
pysal/spreg/utils.py | 132 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 8 +-
pysal/weights/Distance.py | 74 +-
pysal/weights/_contW_binning.py | 10 +-
pysal/weights/spatial_lag.py | 117 +-
pysal/weights/tests/test_Distance.py | 69 +-
pysal/weights/tests/test_Wsets.py | 28 +-
pysal/weights/tests/test_spatial_lag.py | 28 +-
pysal/weights/tests/test_user.py | 42 +-
pysal/weights/tests/test_util.py | 7 +
pysal/weights/tests/test_weights.py | 69 +-
pysal/weights/user.py | 17 +-
pysal/weights/util.py | 101 +-
pysal/weights/weights.py | 12 +-
setup.py | 61 +-
tools/bump.py | 84 +
tools/spregsync | 47 +
370 files changed, 117023 insertions(+), 8769 deletions(-)
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