[pysal] branch upstream updated (776b952 -> 9f42f73)
Bas Couwenberg
sebastic at debian.org
Fri Sep 30 10:55:49 UTC 2016
This is an automated email from the git hooks/post-receive script.
sebastic pushed a change to branch upstream
in repository pysal.
from 776b952 Imported Upstream version 1.11.2
new 9f42f73 Imported Upstream version 1.12.0
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.travis.yml | 29 +-
.travis_testing.sh | 2 +-
CHANGELOG.txt | 112 +
doc/source/conf.py | 4 +-
doc/source/index.rst | 2 +-
doc/source/library/contrib/index.rst | 10 +-
doc/source/library/spreg/index.rst | 2 +
doc/source/library/spreg/sur.rst | 12 +
doc/source/library/spreg/sur_error.rst | 12 +
doc/source/library/spreg/sur_lag.rst | 12 +
pysal/.gitignore | 10 +
pysal/__init__.py | 23 +-
pysal/cg/comparators.py | 153 +
pysal/cg/shapes.py | 40 +-
pysal/cg/sphere.py | 152 +-
pysal/cg/tests/test_sphere.py | 109 +
pysal/common.py | 96 +-
pysal/contrib/README.rst | 10 +-
pysal/contrib/geotable/__init__.py | 1 +
pysal/contrib/geotable/config.py | 64 +
pysal/contrib/geotable/io.py | 38 +
pysal/contrib/geotable/ops/__init__.py | 2 +
pysal/contrib/geotable/ops/_accessors.py | 45 +
pysal/contrib/geotable/ops/_shapely.py | 174 +
pysal/contrib/geotable/ops/atomic.py | 10 +
pysal/contrib/geotable/ops/tabular.py | 118 +
.../geotable/ops}/tests/__init__.py | 0
pysal/contrib/geotable/ops/tests/test_accessors.py | 356 +
pysal/contrib/geotable/ops/tests/test_shapely.py | 215 +
pysal/contrib/geotable/ops/tests/test_tabular.py | 72 +
pysal/{cg => contrib/geotable}/tests/__init__.py | 0
pysal/contrib/geotable/tests/test_utils.py | 13 +
pysal/contrib/geotable/utils.py | 70 +
pysal/contrib/glm/README.md | 30 +
pysal/contrib/glm/__init__.py | 4 +
pysal/contrib/glm/base.py | 408 +
pysal/contrib/glm/family.py | 1845 +++
pysal/contrib/glm/glm.py | 365 +
pysal/contrib/glm/iwls.py | 79 +
pysal/contrib/glm/links.py | 953 ++
pysal/contrib/glm/tests/test_glm.py | 993 ++
pysal/contrib/glm/utils.py | 350 +
pysal/contrib/glm/varfuncs.py | 284 +
pysal/contrib/network/klincs.py | 18 +-
pysal/contrib/network/lincs.py | 52 +-
pysal/contrib/pdio/__init__.py | 4 +
.../{pdutilities/dbf_utilities.py => pdio/dbf.py} | 0
.../file_utilities.py => pdio/file.py} | 4 +-
.../{pdutilities/shp_utilities.py => pdio/shp.py} | 0
pysal/contrib/pdutilities/__init__.py | 4 -
pysal/contrib/shapely_ext.py | 4 +-
pysal/contrib/spint/README.md | 48 +-
pysal/contrib/spint/__init__.py | 6 +
pysal/contrib/spint/count_model.py | 191 +
pysal/contrib/spint/dispersion.py | 102 +
pysal/contrib/spint/gravity.py | 1670 ++-
pysal/contrib/spint/gravity_stats.py | 144 -
pysal/contrib/spint/notebooks/4d_distance.ipynb | 531 +
pysal/contrib/spint/notebooks/Gaussian_SAR.ipynb | 791 ++
pysal/contrib/spint/notebooks/IV_FLOWS.ipynb | 195 +
.../contrib/spint/notebooks/NYC_Bike_Example.ipynb | 661 +
.../contrib/spint/notebooks/New_DistanceBand.ipynb | 326 +
pysal/contrib/spint/notebooks/ODW_example.ipynb | 288 +
pysal/contrib/spint/notebooks/OD_weights.ipynb | 254 +
pysal/contrib/spint/notebooks/Vec_SA_Test.ipynb | 389 +
pysal/contrib/spint/notebooks/autograd_test.ipynb | 128 +
.../contrib/spint/notebooks/dispersion_test.ipynb | 455 +
.../examples/Example_NYCBikes_AllFeatures.ipynb | 919 ++
pysal/contrib/spint/notebooks/glm_speed.ipynb | 360 +
pysal/contrib/spint/notebooks/local_SI.ipynb | 232 +
pysal/contrib/spint/notebooks/netW.ipynb | 305 +
.../spint/notebooks/sparse_categorical.ipynb | 184 +
.../notebooks/sparse_categorical_bottleneck.ipynb | 79 +
.../spint/notebooks/sparse_categorical_speed.ipynb | 596 +
pysal/contrib/spint/notebooks/sparse_grav.ipynb | 457 +
.../spint/notebooks/sparse_scipy_optim.ipynb | 165 +
.../spint/notebooks/sparse_vs_dense_grav.ipynb | 499 +
pysal/contrib/spint/notebooks/test_grav.ipynb | 293 +
.../contrib/spint/notebooks/validate_gravity.ipynb | 966 ++
pysal/contrib/spint/tests/test_count_model.py | 87 +
pysal/contrib/spint/tests/test_dispersion.py | 47 +
pysal/contrib/spint/tests/test_gravity.py | 803 +-
pysal/contrib/spint/tests/test_gravity_stats.py | 193 -
pysal/contrib/spint/tests/test_vec_SA.py | 54 +
pysal/contrib/spint/utils.py | 120 +
pysal/contrib/spint/vec_SA.py | 342 +
pysal/contrib/viz/plot.py | 52 +
pysal/core/IOHandlers/__init__.py | 5 +
pysal/core/IOHandlers/db.py | 88 +
pysal/core/IOHandlers/geoda_txt.py | 2 +-
pysal/core/IOHandlers/pyDbfIO.py | 6 +-
pysal/core/IOHandlers/tests/test_db.py | 55 +
pysal/core/Tables.py | 23 +-
pysal/core/tests/test_Tables.py | 29 +
pysal/esda/gamma.py | 25 +-
pysal/esda/geary.py | 53 +-
pysal/esda/getisord.py | 111 +-
pysal/esda/join_counts.py | 60 +-
pysal/esda/mapclassify.py | 308 +-
pysal/esda/mixture_smoothing.py | 12 +-
pysal/esda/moran.py | 394 +-
pysal/esda/smoothing.py | 481 +-
pysal/esda/tabular.py | 306 +
pysal/esda/tests/test_gamma.py | 31 +-
pysal/esda/tests/test_geary.py | 25 +-
pysal/esda/tests/test_getisord.py | 30 +-
pysal/esda/tests/test_join_counts.py | 27 +-
pysal/esda/tests/test_mapclassify.py | 35 +-
pysal/esda/tests/test_moran.py | 70 +-
pysal/esda/tests/test_smoothing.py | 399 +-
pysal/examples/Polygon_Holes/Polygon_Holes.cpg | 1 +
.../Polygon_Holes.dbf} | Bin 498 -> 498 bytes
.../Line.prj => Polygon_Holes/Polygon_Holes.prj} | 0
.../Polygon_Holes.qpj} | 0
pysal/examples/Polygon_Holes/Polygon_Holes.shp | Bin 0 -> 1528 bytes
.../Polygon_Holes.shx} | Bin 124 -> 124 bytes
pysal/examples/nyc_bikes/nyc_bikes_ct.csv | 14043 +++++++++++++++++++
pysal/examples/nyc_bikes/nyct2010.dbf | Bin 0 -> 381602 bytes
pysal/examples/nyc_bikes/nyct2010.prj | 1 +
pysal/examples/nyc_bikes/nyct2010.shp | Bin 0 -> 2648092 bytes
pysal/examples/nyc_bikes/nyct2010.shp.xml | 1 +
pysal/examples/nyc_bikes/nyct2010.shx | Bin 0 -> 17428 bytes
pysal/inequality/gini.py | 89 +-
pysal/inequality/tests/test_gini.py | 33 +
pysal/network/Network_Usage.ipynb | 689 +
pysal/network/analysis.py | 50 +-
pysal/network/network.py | 541 +-
pysal/network/tests/test_network.py | 15 +-
pysal/network/util.py | 130 +-
pysal/spatial_dynamics/markov.py | 648 +-
pysal/spatial_dynamics/tests/test_markov.py | 107 +-
pysal/spreg/diagnostics_sur.py | 60 +-
pysal/spreg/ml_error.py | 23 +-
pysal/spreg/ml_lag.py | 24 +-
pysal/spreg/sputils.py | 275 +
pysal/spreg/sur.py | 155 +-
pysal/spreg/tests/skip.py | 6 +
pysal/spreg/tests/test_diagnostics.py | 1 -
pysal/spreg/tests/test_ml_error.py | 73 +-
pysal/spreg/tests/test_ml_error_regimes.py | 6 +-
pysal/spreg/tests/test_ml_lag.py | 65 +-
pysal/spreg/tests/test_ml_lag_regimes.py | 7 +-
pysal/spreg/tests/test_sputils.py | 134 +
pysal/spreg/tests/test_sur_error.py | 32 +-
pysal/spreg/user_output.py | 39 +-
pysal/spreg/utils.py | 228 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 429 +-
pysal/weights/Distance.py | 541 +-
pysal/weights/Wsets.py | 4 +-
pysal/weights/__init__.py | 5 -
pysal/weights/_contW_binning.py | 205 +-
pysal/weights/_contW_lists.py | 90 +
pysal/weights/_contW_rtree.py | 10 -
pysal/weights/spintW.py | 254 +
pysal/weights/tests/test_Contiguity.py | 145 +-
pysal/weights/tests/test_Distance.py | 421 +-
pysal/weights/tests/test__contW_binning.py | 10 +-
...test__contW_binning.py => test__contW_lists.py} | 10 +-
pysal/weights/tests/test_spintW.py | 173 +
pysal/weights/tests/test_weights.py | 4 +-
pysal/weights/user.py | 171 +-
pysal/weights/util.py | 49 +-
pysal/weights/weights.py | 76 +-
pysal/weights/weights_from_geojson.ipynb | 311 -
requirements_plus.txt | 12 +
setup.py | 4 +-
tools/github_stats.py | 7 +-
travis.txt | 4 +-
169 files changed, 39543 insertions(+), 3744 deletions(-)
create mode 100644 doc/source/library/spreg/sur.rst
create mode 100644 doc/source/library/spreg/sur_error.rst
create mode 100644 doc/source/library/spreg/sur_lag.rst
create mode 100644 pysal/.gitignore
create mode 100644 pysal/cg/comparators.py
create mode 100644 pysal/cg/tests/test_sphere.py
create mode 100644 pysal/contrib/geotable/__init__.py
create mode 100644 pysal/contrib/geotable/config.py
create mode 100644 pysal/contrib/geotable/io.py
create mode 100644 pysal/contrib/geotable/ops/__init__.py
create mode 100644 pysal/contrib/geotable/ops/_accessors.py
create mode 100644 pysal/contrib/geotable/ops/_shapely.py
create mode 100644 pysal/contrib/geotable/ops/atomic.py
create mode 100644 pysal/contrib/geotable/ops/tabular.py
rename pysal/{weights => contrib/geotable/ops}/tests/__init__.py (100%)
create mode 100644 pysal/contrib/geotable/ops/tests/test_accessors.py
create mode 100644 pysal/contrib/geotable/ops/tests/test_shapely.py
create mode 100644 pysal/contrib/geotable/ops/tests/test_tabular.py
copy pysal/{cg => contrib/geotable}/tests/__init__.py (100%)
create mode 100644 pysal/contrib/geotable/tests/test_utils.py
create mode 100644 pysal/contrib/geotable/utils.py
create mode 100644 pysal/contrib/glm/README.md
create mode 100644 pysal/contrib/glm/__init__.py
create mode 100644 pysal/contrib/glm/base.py
create mode 100644 pysal/contrib/glm/family.py
create mode 100644 pysal/contrib/glm/glm.py
create mode 100644 pysal/contrib/glm/iwls.py
create mode 100644 pysal/contrib/glm/links.py
create mode 100644 pysal/contrib/glm/tests/test_glm.py
create mode 100644 pysal/contrib/glm/utils.py
create mode 100644 pysal/contrib/glm/varfuncs.py
create mode 100644 pysal/contrib/pdio/__init__.py
rename pysal/contrib/{pdutilities/dbf_utilities.py => pdio/dbf.py} (100%)
rename pysal/contrib/{pdutilities/file_utilities.py => pdio/file.py} (95%)
rename pysal/contrib/{pdutilities/shp_utilities.py => pdio/shp.py} (100%)
delete mode 100644 pysal/contrib/pdutilities/__init__.py
create mode 100644 pysal/contrib/spint/__init__.py
create mode 100644 pysal/contrib/spint/count_model.py
create mode 100644 pysal/contrib/spint/dispersion.py
delete mode 100644 pysal/contrib/spint/gravity_stats.py
create mode 100644 pysal/contrib/spint/notebooks/4d_distance.ipynb
create mode 100644 pysal/contrib/spint/notebooks/Gaussian_SAR.ipynb
create mode 100644 pysal/contrib/spint/notebooks/IV_FLOWS.ipynb
create mode 100644 pysal/contrib/spint/notebooks/NYC_Bike_Example.ipynb
create mode 100644 pysal/contrib/spint/notebooks/New_DistanceBand.ipynb
create mode 100644 pysal/contrib/spint/notebooks/ODW_example.ipynb
create mode 100644 pysal/contrib/spint/notebooks/OD_weights.ipynb
create mode 100644 pysal/contrib/spint/notebooks/Vec_SA_Test.ipynb
create mode 100644 pysal/contrib/spint/notebooks/autograd_test.ipynb
create mode 100644 pysal/contrib/spint/notebooks/dispersion_test.ipynb
create mode 100644 pysal/contrib/spint/notebooks/examples/Example_NYCBikes_AllFeatures.ipynb
create mode 100644 pysal/contrib/spint/notebooks/glm_speed.ipynb
create mode 100644 pysal/contrib/spint/notebooks/local_SI.ipynb
create mode 100644 pysal/contrib/spint/notebooks/netW.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_categorical.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_categorical_bottleneck.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_categorical_speed.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_grav.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_scipy_optim.ipynb
create mode 100644 pysal/contrib/spint/notebooks/sparse_vs_dense_grav.ipynb
create mode 100644 pysal/contrib/spint/notebooks/test_grav.ipynb
create mode 100644 pysal/contrib/spint/notebooks/validate_gravity.ipynb
create mode 100644 pysal/contrib/spint/tests/test_count_model.py
create mode 100644 pysal/contrib/spint/tests/test_dispersion.py
delete mode 100644 pysal/contrib/spint/tests/test_gravity_stats.py
create mode 100644 pysal/contrib/spint/tests/test_vec_SA.py
create mode 100644 pysal/contrib/spint/utils.py
create mode 100644 pysal/contrib/spint/vec_SA.py
create mode 100644 pysal/contrib/viz/plot.py
create mode 100644 pysal/core/IOHandlers/db.py
create mode 100644 pysal/core/IOHandlers/tests/test_db.py
create mode 100644 pysal/core/tests/test_Tables.py
create mode 100644 pysal/esda/tabular.py
create mode 100644 pysal/examples/Polygon_Holes/Polygon_Holes.cpg
copy pysal/examples/{Polygon/Polygon.dbf => Polygon_Holes/Polygon_Holes.dbf} (80%)
copy pysal/examples/{Line/Line.prj => Polygon_Holes/Polygon_Holes.prj} (100%)
copy pysal/examples/{networks/nonplanarsegments.qpj => Polygon_Holes/Polygon_Holes.qpj} (100%)
create mode 100644 pysal/examples/Polygon_Holes/Polygon_Holes.shp
copy pysal/examples/{Polygon/Polygon.shx => Polygon_Holes/Polygon_Holes.shx} (54%)
create mode 100644 pysal/examples/nyc_bikes/nyc_bikes_ct.csv
create mode 100644 pysal/examples/nyc_bikes/nyct2010.dbf
create mode 100644 pysal/examples/nyc_bikes/nyct2010.prj
create mode 100644 pysal/examples/nyc_bikes/nyct2010.shp
create mode 100644 pysal/examples/nyc_bikes/nyct2010.shp.xml
create mode 100644 pysal/examples/nyc_bikes/nyct2010.shx
create mode 100644 pysal/inequality/tests/test_gini.py
create mode 100644 pysal/network/Network_Usage.ipynb
create mode 100644 pysal/spreg/sputils.py
create mode 100644 pysal/spreg/tests/skip.py
create mode 100644 pysal/spreg/tests/test_sputils.py
create mode 100644 pysal/weights/_contW_lists.py
create mode 100644 pysal/weights/spintW.py
copy pysal/weights/tests/{test__contW_binning.py => test__contW_lists.py} (94%)
create mode 100644 pysal/weights/tests/test_spintW.py
delete mode 100644 pysal/weights/weights_from_geojson.ipynb
create mode 100644 requirements_plus.txt
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/pysal.git
More information about the Pkg-grass-devel
mailing list