[hdf5] branch master updated (f4b5e67 -> d5f9a09)
Gilles Filippini
pini at debian.org
Thu Dec 21 22:06:31 UTC 2017
This is an automated email from the git hooks/post-receive script.
pini pushed a change to branch master
in repository hdf5.
from f4b5e67 debian/rules: fix javahelper invocation (closes: #871506)
new d793c46 Improve flavor-configure-option.patch
new 277d966 dh_auto_test for serial flavor
new c93c5c5 Prepare import orig of upstream 1.10.1+docs
new 173f2a1 New upstream version 1.10.1+docs
new 3ed06b5 Merge tag 'upstream/1.10.1+docs'
new b270aae Refresh patches
new fad8333 debian/update-symbols-files-soname: fix script to match distinct sonames
new 6db84a7 Rename and update the symbols files with the new sonames
new d1e4a39 debian/control: update sonames
new 1e4871f Update symbols and version files
new 841f117 New patch fix-unaligned-accesses.patch
new a2e2422 mv debian/README{,.Debina} + add v1.10.{0,1} compatibility note
new fe89379 Upload release 1.10.1+docs-1~exp1 to experimental
new 1b2b2d5 libhdf5[-flavor]-101 conflicts / replaces libhdf5[-flavor]-100
new 93b3e2e Disable dh_auto_test on ppc64el (HDFFV-10309)
new 608c9fb closes: #855810
new d5f9a09 Priority: replace 'extra' with 'optional'
The 17 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ACKNOWLEDGMENTS | 14 +-
CMakeFilters.cmake | 86 +-
CMakeInstallation.cmake | 196 +-
CMakeLists.txt | 350 +-
COPYING | 18 +-
COPYING_LBNL_HDF5 | 49 +
CTestConfig.cmake | 19 +-
MANIFEST | 1440 ++-
Makefile | 10 +-
Makefile.am | 10 +-
Makefile.dist | 10 +-
Makefile.in | 12 +-
README.txt | 2 +-
UserMacros.cmake | 18 +-
acsite.m4 | 11 +-
autogen.sh | 10 +-
bin/COPYING | 11 +-
bin/buildhdf5 | 10 +-
bin/chkmanifest | 40 +-
bin/dependencies | 10 +-
bin/deploy | 10 +-
bin/distdep | 10 +-
bin/genparser | 10 +-
bin/h5vers | 120 +-
bin/iostats | 10 +-
bin/locate_sw | 10 +-
bin/make_err | 20 +-
bin/make_overflow | 20 +-
bin/make_vers | 20 +-
bin/mkdirs | 10 +-
bin/newer | 10 +-
bin/output_filter.sh | 25 +-
bin/release | 257 +-
bin/restore.sh | 65 +
bin/snapshot | 564 +-
bin/trace | 118 +-
bin/yodconfigure | 11 +-
c++/CMakeLists.txt | 8 +-
c++/COPYING | 11 +-
c++/Makefile.am | 10 +-
c++/Makefile.in | 21 +-
c++/examples/CMakeLists.txt | 12 +-
c++/examples/CMakeTests.cmake | 60 +-
c++/examples/Makefile.am | 10 +-
c++/examples/Makefile.in | 21 +-
c++/examples/chunks.cpp | 26 +-
c++/examples/compound.cpp | 26 +-
c++/examples/create.cpp | 17 +-
c++/examples/extend_ds.cpp | 24 +-
c++/examples/h5group.cpp | 26 +-
c++/examples/h5tutr_cmprss.cpp | 23 +-
c++/examples/h5tutr_crtatt.cpp | 16 +-
c++/examples/h5tutr_crtdat.cpp | 16 +-
c++/examples/h5tutr_crtgrp.cpp | 23 +-
c++/examples/h5tutr_crtgrpar.cpp | 23 +-
c++/examples/h5tutr_crtgrpd.cpp | 23 +-
c++/examples/h5tutr_extend.cpp | 23 +-
c++/examples/h5tutr_rdwt.cpp | 16 +-
c++/examples/h5tutr_subset.cpp | 23 +-
c++/examples/readdata.cpp | 26 +-
c++/examples/run-c++-ex.sh.in | 10 +-
c++/examples/testh5c++.sh.in | 10 +-
c++/examples/writedata.cpp | 26 +-
c++/src/CMakeLists.txt | 18 +-
c++/src/H5AbstractDs.cpp | 463 +-
c++/src/H5AbstractDs.h | 88 +-
c++/src/H5Alltypes.h | 12 +-
c++/src/H5ArrayType.cpp | 263 +-
c++/src/H5ArrayType.h | 68 +-
c++/src/H5AtomType.cpp | 379 +-
c++/src/H5AtomType.h | 84 +-
c++/src/H5Attribute.cpp | 582 +-
c++/src/H5Attribute.h | 131 +-
c++/src/H5Classes.h | 66 +-
c++/src/H5CommonFG.cpp | 1366 +-
c++/src/H5CommonFG.h | 190 +-
c++/src/H5CompType.cpp | 599 +-
c++/src/H5CompType.h | 145 +-
c++/src/H5Cpp.h | 23 +-
c++/src/H5CppDoc.h | 28 +-
c++/src/H5DataSet.cpp | 877 +-
c++/src/H5DataSet.h | 142 +-
c++/src/H5DataSpace.cpp | 828 +-
c++/src/H5DataSpace.h | 177 +-
c++/src/H5DataType.cpp | 1035 +-
c++/src/H5DataType.h | 189 +-
c++/src/H5DcreatProp.cpp | 987 +-
c++/src/H5DcreatProp.h | 173 +-
c++/src/H5DxferProp.cpp | 605 +-
c++/src/H5DxferProp.h | 154 +-
c++/src/H5EnumType.cpp | 373 +-
c++/src/H5EnumType.h | 97 +-
c++/src/H5Exception.cpp | 665 +-
c++/src/H5Exception.h | 173 +-
c++/src/H5FaccProp.cpp | 917 +-
c++/src/H5FaccProp.h | 205 +-
c++/src/H5FcreatProp.cpp | 393 +-
c++/src/H5FcreatProp.h | 117 +-
c++/src/H5File.cpp | 783 +-
c++/src/H5File.h | 155 +-
c++/src/H5FloatType.cpp | 419 +-
c++/src/H5FloatType.h | 90 +-
c++/src/H5Group.cpp | 273 +-
c++/src/H5Group.h | 92 +-
c++/src/H5IdComponent.cpp | 445 +-
c++/src/H5IdComponent.h | 132 +-
c++/src/H5Include.h | 14 +-
c++/src/H5IntType.cpp | 184 +-
c++/src/H5IntType.h | 66 +-
c++/src/H5LaccProp.cpp | 149 +
c++/src/H5LaccProp.h | 72 +
c++/src/H5Library.cpp | 243 +-
c++/src/H5Library.h | 60 +-
c++/src/H5Location.cpp | 2128 ++--
c++/src/H5Location.h | 304 +-
c++/src/H5Object.cpp | 376 +-
c++/src/H5Object.h | 139 +-
c++/src/H5OcreatProp.cpp | 138 +-
c++/src/H5OcreatProp.h | 67 +-
c++/src/H5PredType.cpp | 471 +-
c++/src/H5PredType.h | 348 +-
c++/src/H5PropList.cpp | 850 +-
c++/src/H5PropList.h | 171 +-
c++/src/H5StrType.cpp | 347 +-
c++/src/H5StrType.h | 80 +-
c++/src/H5VarLenType.cpp | 110 +-
c++/src/H5VarLenType.h | 56 +-
c++/src/Makefile.am | 37 +-
c++/src/Makefile.in | 120 +-
c++/src/cpp_doc_config | 2 +-
c++/src/h5c++.in | 12 +-
c++/src/header.html | 10 +-
c++/test/CMakeLists.txt | 14 +-
c++/test/CMakeTests.cmake | 55 +-
c++/test/H5srcdir_str.h.in | 10 +-
c++/test/Makefile.am | 12 +-
c++/test/Makefile.in | 41 +-
c++/test/dsets.cpp | 1780 +--
c++/test/h5cpputil.cpp | 187 +-
c++/test/h5cpputil.h | 94 +-
c++/test/tarray.cpp | 531 +-
c++/test/tattr.cpp | 2161 ++--
c++/test/tcompound.cpp | 1021 +-
c++/test/tdspl.cpp | 160 +-
c++/test/testhdf5.cpp | 126 +-
c++/test/tfile.cpp | 928 +-
c++/test/tfilter.cpp | 128 +-
c++/test/th5s.cpp | 625 +-
c++/test/th5s.h5 | Bin 2049 -> 2049 bytes
c++/test/titerate.cpp | 527 +
c++/test/tlinks.cpp | 404 +-
c++/test/tobject.cpp | 631 +-
c++/test/trefer.cpp | 1099 +-
c++/test/ttypes.cpp | 682 +-
c++/test/tvlstr.cpp | 1086 +-
config/BlankForm | 10 +-
config/COPYING | 11 +-
config/Makefile.am.blank | 10 +-
config/apple | 10 +-
config/cce-fflags | 10 +-
config/cce-flags | 10 +-
config/cmake/CMakeFindJavaCommon.cmake | 14 +-
config/cmake/CTestCustom.cmake | 17 +
config/cmake/CTestScript.cmake | 163 +
config/cmake/ConfigureChecks.cmake | 113 +-
config/cmake/ConversionTests.c | 11 +
config/cmake/FindHDF5.cmake.in | 86 -
config/cmake/FindHDFJAVA.cmake.in | 23 +-
config/cmake/FindJNI.cmake | 59 +-
config/cmake/H5cxx_config.h.in | 11 +
config/cmake/H5pubconf.h.in | 120 +-
config/cmake/HDF518_Examples.cmake.in | 119 +-
config/cmake/HDF5Macros.cmake | 35 +-
config/cmake/HDF5UseFortran.cmake | 403 +-
config/cmake/HDF5_Examples.cmake.in | 248 +-
config/cmake/HDF5_Examples_options.cmake | 59 +
config/cmake/HDF5_Process_Flex_Files.cmake | 15 +-
config/cmake/HDFCompilerFlags.cmake | 211 +-
config/cmake/README.txt.cmake.in | 4 +-
config/cmake/UseJava.cmake | 188 +-
config/cmake/UseJavaClassFilelist.cmake | 15 +-
config/cmake/UseJavaSymlinks.cmake | 15 +-
config/cmake/UserMacros/Windows_MT.cmake | 30 +-
config/cmake/cacheinit.cmake | 19 +-
config/cmake/hdf5-config-version.cmake.in | 41 +-
config/cmake/hdf5-config.cmake.in | 17 +-
config/cmake/jrunTest.cmake | 190 +-
config/cmake/mccacheinit.cmake | 21 +-
config/cmake/scripts/CTestScript.cmake | 405 +-
config/cmake/scripts/HDF5config.cmake | 416 +-
config/cmake/scripts/HDF5options.cmake | 52 +
config/cmake/userblockTest.cmake | 45 +-
config/cmake/vfdTest.cmake | 56 +-
config/cmake_ext_mod/CheckTypeSize.cmake | 35 +-
config/cmake_ext_mod/ConfigureChecks.cmake | 249 +-
config/cmake_ext_mod/FindMPI.cmake | 101 +-
config/cmake_ext_mod/FindSZIP.cmake | 55 +-
config/cmake_ext_mod/GetTimeOfDayTest.cpp | 11 +
config/cmake_ext_mod/HDFCXXTests.cpp | 46 +
config/cmake_ext_mod/HDFLibMacros.cmake | 65 +-
config/cmake_ext_mod/HDFMacros.cmake | 193 +-
config/cmake_ext_mod/HDFTests.c | 60 +-
config/cmake_ext_mod/HDFUseFortran.cmake | 34 +-
config/cmake_ext_mod/grepTest.cmake | 31 +-
config/cmake_ext_mod/prunTest.cmake | 145 -
config/cmake_ext_mod/runTest.cmake | 229 +-
config/commence.am | 10 +-
config/conclude.am | 19 +-
config/conclude_fc.am | 14 +-
config/cygwin | 22 +
config/examples.am | 10 +-
config/freebsd | 10 +-
config/gnu-cxxflags | 20 +-
config/gnu-fflags | 10 +-
config/gnu-flags | 230 +-
config/i386-pc-cygwin32 | 31 -
config/i686-pc-cygwin | 137 -
config/ibm-aix | 10 +-
config/ibm-flags | 10 +-
config/intel-fflags | 10 +-
config/intel-flags | 30 +-
config/linux-gnu | 10 +-
config/linux-gnuaout | 10 +-
config/linux-gnulibc1 | 11 +-
config/linux-gnulibc2 | 10 +-
config/lt_vers.am | 57 +-
config/pgi-fflags | 10 +-
config/pgi-flags | 10 +-
config/site-specific/BlankForm | 10 +-
config/solaris | 10 +-
config/x86_64-pc-cygwin | 138 -
configure | 908 +-
configure.ac | 402 +-
debian/README | 19 -
debian/README.Debian | 32 +
debian/changelog | 32 +
debian/control | 32 +-
debian/control.in | 8 +
debian/libhdf5-100.symbols | 4849 --------
debian/libhdf5-101.symbols | 4987 ++++++++
debian/libhdf5-cpp-100.symbols | 1267 --
debian/libhdf5-cpp-101.symbols | 1184 ++
debian/libhdf5-flavor-dev.install.in | 9 +-
debian/libhdf5-flavor-dev.links.in | 17 -
debian/libhdf5-mpich-100.symbols | 4870 --------
debian/libhdf5-mpich-101.symbols | 5006 ++++++++
debian/libhdf5-openmpi-100.symbols | 4870 --------
debian/libhdf5-openmpi-101.symbols | 5006 ++++++++
debian/man/h5pcc.mpich.1 | 1 +
debian/man/h5pcc.openmpi.1 | 1 +
debian/man/h5pfc.mpich.1 | 1 +
debian/man/h5pfc.openmpi.1 | 1 +
debian/mangled-symbols-table | 301 +-
debian/map_mpi.ver | 225 +-
debian/map_serial.ver | 572 +-
debian/orig-tar.sh | 6 +-
debian/patches/CVE-2016-4330.patch | 20 -
debian/patches/CVE-2016-4331-1.patch | 229 -
debian/patches/CVE-2016-4331-2.patch | 19 -
debian/patches/CVE-2016-4332.patch | 37 -
debian/patches/CVE-2016-4333.patch | 23 -
debian/patches/fix-unaligned-accesses.patch | 148 +
debian/patches/flavor-configure-option.patch | 298 +-
debian/patches/java-runtime-exception.patch | 2 +-
debian/patches/path_max.diff | 35 +-
debian/patches/relax-version-check.patch | 37 +-
debian/patches/series | 6 +-
debian/patches/ullong_force.diff | 4 +-
debian/rules | 38 +-
debian/update-symbols-files-soname | 25 +-
examples/CMakeLists.txt | 12 +-
examples/CMakeTests.cmake | 103 +-
examples/Makefile.am | 10 +-
examples/Makefile.in | 21 +-
examples/h5_attribute.c | 10 +-
examples/h5_chunk_read.c | 10 +-
examples/h5_cmprss.c | 10 +-
examples/h5_compound.c | 10 +-
examples/h5_crtatt.c | 10 +-
examples/h5_crtdat.c | 10 +-
examples/h5_crtgrp.c | 10 +-
examples/h5_crtgrpar.c | 10 +-
examples/h5_crtgrpd.c | 10 +-
examples/h5_drivers.c | 10 +-
examples/h5_dtransform.c | 10 +-
examples/h5_elink_unix2win.c | 10 +-
examples/h5_extend.c | 10 +-
examples/h5_extend_write.c | 10 +-
examples/h5_extlink.c | 10 +-
examples/h5_group.c | 10 +-
examples/h5_interm_group.c | 10 +-
examples/h5_mount.c | 10 +-
examples/h5_rdwt.c | 10 +-
examples/h5_read.c | 10 +-
examples/h5_ref2reg.c | 10 +-
examples/h5_reference.c | 10 +-
examples/h5_select.c | 10 +-
examples/h5_shared_mesg.c | 10 +-
examples/h5_subset.c | 10 +-
examples/h5_vds-eiger.c | 11 +
examples/h5_vds-exc.c | 11 +
examples/h5_vds-exclim.c | 11 +
examples/h5_vds-percival-unlim-maxmin.c | 11 +
examples/h5_vds-percival-unlim.c | 11 +
examples/h5_vds-percival.c | 11 +
examples/h5_vds-simpleIO.c | 11 +
examples/h5_vds.c | 10 +-
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examples/run-c-ex.sh.in | 10 +-
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fortran/COPYING | 11 +-
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fortran/examples/CMakeTests.cmake | 99 +-
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fortran/examples/h5_crtatt.f90 | 10 +-
fortran/examples/h5_crtdat.f90 | 10 +-
fortran/examples/h5_crtgrp.f90 | 10 +-
fortran/examples/h5_crtgrpar.f90 | 10 +-
fortran/examples/h5_crtgrpd.f90 | 10 +-
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fortran/examples/h5_rdwt.f90 | 10 +-
fortran/examples/h5_subset.f90 | 10 +-
fortran/examples/hyperslab.f90 | 10 +-
fortran/examples/mountexample.f90 | 10 +-
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java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java | 10 +-
java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java | 10 +-
.../hdf5lib/callbacks/H5P_prp_close_func_cb.java | 10 +-
.../hdf5lib/callbacks/H5P_prp_compare_func_cb.java | 10 +-
.../hdf5lib/callbacks/H5P_prp_copy_func_cb.java | 10 +-
.../hdf5lib/callbacks/H5P_prp_create_func_cb.java | 10 +-
.../hdf5lib/callbacks/H5P_prp_delete_func_cb.java | 10 +-
.../hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java | 10 +-
.../hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java | 10 +-
.../hdf/hdf5lib/exceptions/HDF5AtomException.java | 10 +-
.../hdf5lib/exceptions/HDF5AttributeException.java | 10 +-
.../hdf/hdf5lib/exceptions/HDF5BtreeException.java | 10 +-
.../exceptions/HDF5DataFiltersException.java | 10 +-
.../exceptions/HDF5DataStorageException.java | 10 +-
.../exceptions/HDF5DatasetInterfaceException.java | 10 +-
.../HDF5DataspaceInterfaceException.java | 10 +-
.../exceptions/HDF5DatatypeInterfaceException.java | 10 +-
java/src/hdf/hdf5lib/exceptions/HDF5Exception.java | 10 +-
.../exceptions/HDF5ExternalFileListException.java | 10 +-
.../exceptions/HDF5FileInterfaceException.java | 10 +-
.../exceptions/HDF5FunctionArgumentException.java | 10 +-
.../exceptions/HDF5FunctionEntryExitException.java | 10 +-
.../hdf/hdf5lib/exceptions/HDF5HeapException.java | 10 +-
.../exceptions/HDF5InternalErrorException.java | 10 +-
.../hdf/hdf5lib/exceptions/HDF5JavaException.java | 10 +-
.../hdf5lib/exceptions/HDF5LibraryException.java | 10 +-
.../exceptions/HDF5LowLevelIOException.java | 10 +-
.../exceptions/HDF5MetaDataCacheException.java | 10 +-
.../exceptions/HDF5ObjectHeaderException.java | 10 +-
.../HDF5PropertyListInterfaceException.java | 10 +-
.../hdf5lib/exceptions/HDF5ReferenceException.java | 10 +-
.../HDF5ResourceUnavailableException.java | 10 +-
.../exceptions/HDF5SymbolTableException.java | 10 +-
.../hdf/hdf5lib/structs/H5AC_cache_config_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5A_info_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5E_error2_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5F_info2_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5G_info_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5L_info_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5O_info_t.java | 10 +-
java/src/hdf/hdf5lib/structs/H5_ih_info_t.java | 10 +-
java/src/jni/CMakeLists.txt | 14 +-
java/src/jni/Makefile.am | 12 +-
java/src/jni/Makefile.in | 80 +-
java/src/jni/exceptionImp.c | 60 +-
java/src/jni/exceptionImp.h | 23 +-
java/src/jni/h5Constants.c | 1877 ++-
java/src/jni/h5Imp.c | 36 +-
java/src/jni/h5Imp.h | 34 +-
java/src/jni/h5aImp.c | 436 +-
java/src/jni/h5aImp.h | 101 +-
java/src/jni/h5dImp.c | 436 +-
java/src/jni/h5dImp.h | 133 +-
java/src/jni/h5eImp.c | 107 +-
java/src/jni/h5eImp.h | 61 +-
java/src/jni/h5fImp.c | 158 +-
java/src/jni/h5fImp.h | 85 +-
java/src/jni/h5gImp.c | 174 +-
java/src/jni/h5gImp.h | 40 +-
java/src/jni/h5iImp.c | 95 +-
java/src/jni/h5iImp.h | 63 +-
java/src/jni/h5jni.h | 174 +-
java/src/jni/h5lImp.c | 516 +-
java/src/jni/h5lImp.h | 331 +-
java/src/jni/h5oImp.c | 750 +-
java/src/jni/h5oImp.h | 348 +-
java/src/jni/h5pImp.c | 1468 ++-
java/src/jni/h5pImp.h | 553 +-
java/src/jni/h5plImp.c | 185 +-
java/src/jni/h5plImp.h | 79 +-
java/src/jni/h5rImp.c | 86 +-
java/src/jni/h5rImp.h | 28 +-
java/src/jni/h5sImp.c | 116 +-
java/src/jni/h5sImp.h | 154 +-
java/src/jni/h5tImp.c | 398 +-
java/src/jni/h5tImp.h | 211 +-
java/src/jni/h5util.c | 266 +-
java/src/jni/h5util.h | 42 +-
java/src/jni/h5zImp.c | 21 +-
java/src/jni/h5zImp.h | 19 +-
java/src/jni/nativeData.c | 75 +-
java/src/jni/nativeData.h | 73 +-
java/test/CMakeLists.txt | 46 +-
java/test/JUnit-interface.txt | 7 +-
java/test/Makefile.am | 10 +-
java/test/Makefile.in | 21 +-
java/test/TestAll.java | 10 +-
java/test/TestH5.java | 16 +-
java/test/TestH5A.java | 10 +-
java/test/TestH5D.java | 10 +-
java/test/TestH5Dparams.java | 10 +-
java/test/TestH5Dplist.java | 10 +-
java/test/TestH5E.java | 14 +-
java/test/TestH5Edefault.java | 10 +-
java/test/TestH5Eregister.java | 10 +-
java/test/TestH5F.java | 10 +-
java/test/TestH5Fbasic.java | 10 +-
java/test/TestH5Fparams.java | 10 +-
java/test/TestH5Fswmr.java | 10 +-
java/test/TestH5G.java | 10 +-
java/test/TestH5Gbasic.java | 10 +-
java/test/TestH5Giterate.java | 10 +-
java/test/TestH5Lbasic.java | 10 +-
java/test/TestH5Lcreate.java | 10 +-
java/test/TestH5Lparams.java | 10 +-
java/test/TestH5Obasic.java | 10 +-
java/test/TestH5Ocopy.java | 11 +-
java/test/TestH5Ocreate.java | 10 +-
java/test/TestH5Oparams.java | 10 +-
java/test/TestH5P.java | 51 +-
java/test/TestH5PData.java | 10 +-
java/test/TestH5PL.java | 163 +-
java/test/TestH5Pfapl.java | 10 +-
java/test/TestH5Plist.java | 10 +-
java/test/TestH5Pvirtual.java | 15 +-
java/test/TestH5R.java | 10 +-
java/test/TestH5S.java | 10 +-
java/test/TestH5Sbasic.java | 10 +-
java/test/TestH5T.java | 10 +-
java/test/TestH5Tbasic.java | 10 +-
java/test/TestH5Tparams.java | 10 +-
java/test/TestH5Z.java | 10 +-
java/test/junit.sh.in | 54 +-
m4/aclocal_cxx.m4 | 78 +-
m4/aclocal_fc.f90 | 149 +
m4/aclocal_fc.m4 | 218 +-
release_docs/COPYING | 11 +-
release_docs/HISTORY-1_10.txt | 1367 ++
release_docs/HISTORY-1_8.txt | 12344 +++++++++++++++++++
release_docs/INSTALL | 306 +-
release_docs/INSTALL_CMake.txt | 482 +-
release_docs/INSTALL_parallel | 12 +
release_docs/RELEASE.txt | 930 +-
release_docs/USING_CMake_Examples.txt | 6 +-
release_docs/USING_HDF5_CMake.txt | 250 +-
src/CMakeLists.txt | 313 +-
src/COPYING | 11 +-
src/H5.c | 16 +-
src/H5A.c | 10 +-
src/H5AC.c | 1642 ++-
src/H5ACdbg.c | 492 +
src/H5AClog.c | 375 +-
src/H5ACmodule.h | 10 +-
src/H5ACmpio.c | 153 +-
src/H5ACpkg.h | 50 +-
src/H5ACprivate.h | 247 +-
src/H5ACproxy_entry.c | 661 +
src/H5ACpublic.h | 71 +-
src/H5Abtree2.c | 10 +-
src/H5Adense.c | 28 +-
src/H5Adeprec.c | 10 +-
src/H5Aint.c | 59 +-
src/H5Amodule.h | 10 +-
src/H5Apkg.h | 10 +-
src/H5Aprivate.h | 10 +-
src/H5Apublic.h | 10 +-
src/H5Atest.c | 10 +-
src/H5B.c | 32 +-
src/H5B2.c | 114 +-
src/H5B2cache.c | 271 +-
src/H5B2dbg.c | 21 +-
src/H5B2hdr.c | 89 +-
src/H5B2int.c | 3739 +-----
src/H5B2internal.c | 1441 +++
src/H5B2leaf.c | 1063 ++
src/H5B2module.h | 10 +-
src/H5B2pkg.h | 109 +-
src/H5B2private.h | 19 +-
src/H5B2public.h | 10 +-
src/H5B2stat.c | 10 +-
src/H5B2test.c | 14 +-
src/H5Bcache.c | 88 +-
src/H5Bdbg.c | 10 +-
src/H5Bmodule.h | 10 +-
src/H5Bpkg.h | 14 +-
src/H5Bprivate.h | 10 +-
src/H5Bpublic.h | 10 +-
src/H5C.c | 9146 ++++++--------
src/H5CS.c | 12 +-
src/H5CSprivate.h | 10 +-
src/H5Cdbg.c | 1597 +++
src/H5Cepoch.c | 240 +
src/H5Cimage.c | 3569 ++++++
src/H5Clog.c | 368 +
src/H5Cmodule.h | 10 +-
src/H5Cmpio.c | 1460 ++-
src/H5Cpkg.h | 1344 +-
src/H5Cprefetched.c | 350 +
src/H5Cprivate.h | 1374 ++-
src/H5Cpublic.h | 10 +-
src/H5Cquery.c | 484 +
src/H5Ctag.c | 907 ++
src/H5Ctest.c | 161 +
src/H5D.c | 64 +-
src/H5Dbtree.c | 10 +-
src/H5Dbtree2.c | 66 +-
src/H5Dchunk.c | 111 +-
src/H5Dcompact.c | 10 +-
src/H5Dcontig.c | 15 +-
src/H5Ddbg.c | 10 +-
src/H5Ddeprec.c | 10 +-
src/H5Dearray.c | 69 +-
src/H5Defl.c | 18 +-
src/H5Dfarray.c | 147 +-
src/H5Dfill.c | 35 +-
src/H5Dint.c | 360 +-
src/H5Dio.c | 59 +-
src/H5Dlayout.c | 14 +-
src/H5Dmodule.h | 10 +-
src/H5Dmpio.c | 10 +-
src/H5Dnone.c | 10 +-
src/H5Doh.c | 16 +-
src/H5Dpkg.h | 17 +-
src/H5Dprivate.h | 11 +-
src/H5Dpublic.h | 20 +-
src/H5Dscatgath.c | 343 +-
src/H5Dselect.c | 94 +-
src/H5Dsingle.c | 10 +-
src/H5Dtest.c | 51 +-
src/H5Dvirtual.c | 14 +-
src/H5E.c | 19 +-
src/H5EA.c | 448 +-
src/H5EAcache.c | 586 +-
src/H5EAdbg.c | 10 +-
src/H5EAdblkpage.c | 67 +-
src/H5EAdblock.c | 92 +-
src/H5EAhdr.c | 74 +-
src/H5EAiblock.c | 51 +-
src/H5EAint.c | 10 +-
src/H5EAmodule.h | 10 +-
src/H5EApkg.h | 122 +-
src/H5EAprivate.h | 28 +-
src/H5EAsblock.c | 77 +-
src/H5EAstat.c | 10 +-
src/H5EAtest.c | 10 +-
src/H5Edefin.h | 16 +-
src/H5Edeprec.c | 10 +-
src/H5Einit.h | 40 +-
src/H5Eint.c | 13 +-
src/H5Emodule.h | 10 +-
src/H5Epkg.h | 10 +-
src/H5Eprivate.h | 10 +-
src/H5Epubgen.h | 22 +-
src/H5Epublic.h | 10 +-
src/H5Eterm.h | 16 +-
src/H5F.c | 494 +-
src/H5FA.c | 347 +-
src/H5FAcache.c | 286 +-
src/H5FAdbg.c | 10 +-
src/H5FAdblkpage.c | 52 +-
src/H5FAdblock.c | 79 +-
src/H5FAhdr.c | 65 +-
src/H5FAint.c | 10 +-
src/H5FAmodule.h | 10 +-
src/H5FApkg.h | 73 +-
src/H5FAprivate.h | 12 +-
src/H5FAstat.c | 10 +-
src/H5FAtest.c | 10 +-
src/H5FD.c | 92 +-
src/H5FDcore.c | 160 +-
src/H5FDcore.h | 10 +-
src/H5FDdirect.c | 18 +-
src/H5FDdirect.h | 10 +-
src/H5FDdrvr_module.h | 10 +-
src/H5FDfamily.c | 109 +-
src/H5FDfamily.h | 10 +-
src/H5FDint.c | 63 +-
src/H5FDlog.c | 175 +-
src/H5FDlog.h | 57 +-
src/H5FDmodule.h | 10 +-
src/H5FDmpi.c | 49 +-
src/H5FDmpi.h | 10 +-
src/H5FDmpio.c | 51 +-
src/H5FDmpio.h | 10 +-
src/H5FDmulti.c | 174 +-
src/H5FDmulti.h | 10 +-
src/H5FDpkg.h | 10 +-
src/H5FDprivate.h | 41 +-
src/H5FDpublic.h | 31 +-
src/H5FDsec2.c | 44 +-
src/H5FDsec2.h | 10 +-
src/H5FDspace.c | 119 +-
src/H5FDstdio.c | 71 +-
src/H5FDstdio.h | 10 +-
src/H5FDtest.c | 13 +-
src/H5FDwindows.c | 10 +-
src/H5FDwindows.h | 10 +-
src/H5FL.c | 28 +-
src/H5FLmodule.h | 10 +-
src/H5FLprivate.h | 22 +-
src/H5FO.c | 10 +-
src/H5FOprivate.h | 10 +-
src/H5FS.c | 161 +-
src/H5FScache.c | 227 +-
src/H5FSdbg.c | 10 +-
src/H5FSint.c | 10 +-
src/H5FSmodule.h | 10 +-
src/H5FSpkg.h | 36 +-
src/H5FSprivate.h | 39 +-
src/H5FSpublic.h | 10 +-
src/H5FSsection.c | 335 +-
src/H5FSstat.c | 12 +-
src/H5FStest.c | 10 +-
src/H5Faccum.c | 107 +-
src/H5Fcwfs.c | 10 +-
src/H5Fdbg.c | 10 +-
src/H5Fdeprec.c | 10 +-
src/H5Fefc.c | 18 +-
src/H5Ffake.c | 10 +-
src/H5Fint.c | 802 +-
src/H5Fio.c | 191 +-
src/H5Fmodule.h | 10 +-
src/H5Fmount.c | 24 +-
src/H5Fmpi.c | 36 +-
src/H5Fpkg.h | 129 +-
src/H5Fprivate.h | 153 +-
src/H5Fpublic.h | 30 +-
src/H5Fquery.c | 296 +-
src/H5Fsfile.c | 10 +-
src/H5Fspace.c | 224 +
src/H5Fsuper.c | 440 +-
src/H5Fsuper_cache.c | 655 +-
src/H5Ftest.c | 44 +-
src/H5G.c | 14 +-
src/H5Gbtree2.c | 10 +-
src/H5Gcache.c | 61 +-
src/H5Gcompact.c | 10 +-
src/H5Gdense.c | 10 +-
src/H5Gdeprec.c | 10 +-
src/H5Gent.c | 12 +-
src/H5Gint.c | 44 +-
src/H5Glink.c | 10 +-
src/H5Gloc.c | 10 +-
src/H5Gmodule.h | 10 +-
src/H5Gname.c | 10 +-
src/H5Gnode.c | 12 +-
src/H5Gobj.c | 10 +-
src/H5Goh.c | 10 +-
src/H5Gpkg.h | 15 +-
src/H5Gprivate.h | 10 +-
src/H5Gpublic.h | 10 +-
src/H5Groot.c | 10 +-
src/H5Gstab.c | 14 +-
src/H5Gtest.c | 12 +-
src/H5Gtraverse.c | 12 +-
src/H5HF.c | 97 +-
src/H5HFbtree2.c | 10 +-
src/H5HFcache.c | 1516 +--
src/H5HFdbg.c | 10 +-
src/H5HFdblock.c | 14 +-
src/H5HFdtable.c | 10 +-
src/H5HFhdr.c | 10 +-
src/H5HFhuge.c | 12 +-
src/H5HFiblock.c | 17 +-
src/H5HFint.c | 146 -
src/H5HFiter.c | 10 +-
src/H5HFman.c | 10 +-
src/H5HFmodule.h | 10 +-
src/H5HFpkg.h | 41 +-
src/H5HFprivate.h | 12 +-
src/H5HFpublic.h | 10 +-
src/H5HFsection.c | 52 +-
src/H5HFspace.c | 10 +-
src/H5HFstat.c | 10 +-
src/H5HFtest.c | 10 +-
src/H5HFtiny.c | 10 +-
src/H5HG.c | 14 +-
src/H5HGcache.c | 376 +-
src/H5HGdbg.c | 10 +-
src/H5HGmodule.h | 10 +-
src/H5HGpkg.h | 13 +-
src/H5HGprivate.h | 10 +-
src/H5HGpublic.h | 10 +-
src/H5HGquery.c | 10 +-
src/H5HL.c | 50 +-
src/H5HLcache.c | 438 +-
src/H5HLdbg.c | 10 +-
src/H5HLdblk.c | 20 +-
src/H5HLint.c | 10 +-
src/H5HLmodule.h | 10 +-
src/H5HLpkg.h | 32 +-
src/H5HLprfx.c | 14 +-
src/H5HLprivate.h | 10 +-
src/H5HLpublic.h | 10 +-
src/H5HP.c | 13 +-
src/H5HPprivate.h | 10 +-
src/H5I.c | 12 +-
src/H5Imodule.h | 10 +-
src/H5Ipkg.h | 10 +-
src/H5Iprivate.h | 10 +-
src/H5Ipublic.h | 10 +-
src/H5Itest.c | 10 +-
src/H5L.c | 16 +-
src/H5Lexternal.c | 10 +-
src/H5Lmodule.h | 10 +-
src/H5Lpkg.h | 10 +-
src/H5Lprivate.h | 10 +-
src/H5Lpublic.h | 10 +-
src/H5MF.c | 3620 +++++-
src/H5MFaggr.c | 171 +-
src/H5MFdbg.c | 132 +-
src/H5MFmodule.h | 10 +-
src/H5MFpkg.h | 79 +-
src/H5MFprivate.h | 29 +-
src/H5MFsection.c | 724 +-
src/H5MM.c | 18 +-
src/H5MMprivate.h | 10 +-
src/H5MMpublic.h | 10 +-
src/H5MP.c | 10 +-
src/H5MPmodule.h | 10 +-
src/H5MPpkg.h | 10 +-
src/H5MPprivate.h | 10 +-
src/H5MPtest.c | 10 +-
src/H5O.c | 407 +-
src/H5Oainfo.c | 10 +-
src/H5Oalloc.c | 985 +-
src/H5Oattr.c | 28 +-
src/H5Oattribute.c | 20 +-
src/H5Obogus.c | 10 +-
src/H5Obtreek.c | 10 +-
src/H5Ocache.c | 1131 +-
src/H5Ocache_image.c | 377 +
src/H5Ochunk.c | 76 +-
src/H5Ocont.c | 10 +-
src/H5Ocopy.c | 37 +-
src/H5Odbg.c | 12 +-
src/H5Odrvinfo.c | 10 +-
src/H5Odtype.c | 306 +-
src/H5Oefl.c | 10 +-
src/H5Ofill.c | 10 +-
src/H5Oflush.c | 88 +-
src/H5Ofsinfo.c | 202 +-
src/H5Oginfo.c | 10 +-
src/H5Olayout.c | 13 +-
src/H5Olinfo.c | 10 +-
src/H5Olink.c | 10 +-
src/H5Omessage.c | 164 +-
src/H5Omodule.h | 10 +-
src/H5Omtime.c | 10 +-
src/H5Oname.c | 10 +-
src/H5Onull.c | 10 +-
src/H5Opkg.h | 161 +-
src/H5Opline.c | 10 +-
src/H5Oprivate.h | 75 +-
src/H5Oproxy.c | 900 --
src/H5Opublic.h | 10 +-
src/H5Orefcount.c | 10 +-
src/H5Osdspace.c | 10 +-
src/H5Oshared.c | 10 +-
src/H5Oshared.h | 10 +-
src/H5Oshmesg.c | 10 +-
src/H5Ostab.c | 10 +-
src/H5Otest.c | 186 +-
src/H5Ounknown.c | 10 +-
src/H5P.c | 18 +-
src/H5PB.c | 1537 +++
src/H5PBmodule.h | 32 +
src/H5PBpkg.h | 58 +
src/H5PBprivate.h | 106 +
src/H5PL.c | 364 +-
src/H5PLextern.h | 10 +-
src/H5PLmodule.h | 10 +-
src/H5PLpkg.h | 48 +
src/H5PLprivate.h | 10 +-
src/H5PLpublic.h | 19 +-
src/H5Pacpl.c | 10 +-
src/H5Pdapl.c | 22 +-
src/H5Pdcpl.c | 24 +-
src/H5Pdeprec.c | 140 +-
src/H5Pdxpl.c | 17 +-
src/H5Pencdec.c | 10 +-
src/H5Pfapl.c | 513 +-
src/H5Pfcpl.c | 260 +-
src/H5Pfmpl.c | 10 +-
src/H5Pgcpl.c | 10 +-
src/H5Pint.c | 14 +-
src/H5Plapl.c | 10 +-
src/H5Plcpl.c | 10 +-
src/H5Pmodule.h | 10 +-
src/H5Pocpl.c | 10 +-
src/H5Pocpypl.c | 10 +-
src/H5Ppkg.h | 12 +-
src/H5Pprivate.h | 10 +-
src/H5Ppublic.h | 28 +-
src/H5Pstrcpl.c | 10 +-
src/H5Ptest.c | 102 +-
src/H5R.c | 10 +-
src/H5RS.c | 10 +-
src/H5RSprivate.h | 10 +-
src/H5Rdeprec.c | 10 +-
src/H5Rmodule.h | 10 +-
src/H5Rpkg.h | 10 +-
src/H5Rprivate.h | 10 +-
src/H5Rpublic.h | 10 +-
src/H5S.c | 14 +-
src/H5SL.c | 26 +-
src/H5SLmodule.h | 10 +-
src/H5SLprivate.h | 10 +-
src/H5SM.c | 22 +-
src/H5SMbtree2.c | 10 +-
src/H5SMcache.c | 84 +-
src/H5SMmessage.c | 10 +-
src/H5SMmodule.h | 10 +-
src/H5SMpkg.h | 12 +-
src/H5SMprivate.h | 10 +-
src/H5SMtest.c | 10 +-
src/H5ST.c | 44 +-
src/H5STprivate.h | 10 +-
src/H5Sall.c | 10 +-
src/H5Sdbg.c | 10 +-
src/H5Shyper.c | 70 +-
src/H5Smodule.h | 10 +-
src/H5Smpio.c | 10 +-
src/H5Snone.c | 10 +-
src/H5Spkg.h | 10 +-
src/H5Spoint.c | 20 +-
src/H5Sprivate.h | 14 +-
src/H5Spublic.h | 10 +-
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tools/test/h5diff/testfiles/h5diff_63.txt | 10 +
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tools/{ => test}/h5diff/testfiles/h5diff_631.txt | 0
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tools/test/h5diff/testfiles/h5diff_ud.txt | 11 +
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tools/{ => test}/h5diff/testfiles/h5diff_v1.txt | 0
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tools/test/h5diff/testh5diff.sh.in | 1183 ++
tools/test/h5diff/testph5diff.sh.in | 62 +
tools/test/h5dump/CMakeLists.txt | 56 +
tools/test/h5dump/CMakeTests.cmake | 1468 +++
tools/test/h5dump/CMakeTestsPBITS.cmake | 351 +
tools/test/h5dump/CMakeTestsVDS.cmake | 244 +
tools/test/h5dump/CMakeTestsXML.cmake | 425 +
tools/test/h5dump/Makefile.am | 58 +
tools/test/h5dump/Makefile.in | 1517 +++
tools/test/h5dump/binread.c | 95 +
tools/test/h5dump/dynlib_dump.c | 89 +
tools/{ => test}/h5dump/errfiles/filter_fail.err | 0
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tools/test/h5dump/h5dumpgentest.c | 10535 ++++++++++++++++
tools/test/h5dump/testh5dump.sh.in | 1343 ++
tools/test/h5dump/testh5dumppbits.sh.in | 596 +
tools/test/h5dump/testh5dumpvds.sh.in | 521 +
tools/test/h5dump/testh5dumpxml.sh.in | 386 +
tools/test/h5format_convert/CMakeLists.txt | 28 +
tools/test/h5format_convert/CMakeTests.cmake | 471 +
tools/test/h5format_convert/Makefile.am | 43 +
tools/test/h5format_convert/Makefile.in | 1436 +++
tools/test/h5format_convert/h5fc_chk_idx.c | 101 +
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tools/test/h5format_convert/testh5fc.sh.in | 506 +
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tools/test/h5import/CMakeTests.cmake | 476 +
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tools/test/h5import/Makefile.in | 1421 +++
tools/test/h5import/h5importtest.c | 369 +
tools/test/h5import/h5importtestutil.sh.in | 382 +
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tools/test/h5jam/CMakeLists.txt | 34 +
tools/test/h5jam/CMakeTests.cmake | 395 +
tools/test/h5jam/Makefile.am | 38 +
tools/test/h5jam/Makefile.in | 1430 +++
tools/test/h5jam/getub.c | 155 +
tools/test/h5jam/h5jamgentest.c | 387 +
tools/test/h5jam/tellub.c | 194 +
tools/{ => test}/h5jam/testfiles/h5jam-help.txt | 0
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tools/{ => test}/h5jam/testfiles/tall.h5 | Bin
tools/{ => test}/h5jam/testfiles/twithub.h5 | Bin
tools/{ => test}/h5jam/testfiles/twithub513.h5 | Bin
tools/{ => test}/h5jam/testfiles/u10.txt | 0
tools/{ => test}/h5jam/testfiles/u511.txt | 0
tools/{ => test}/h5jam/testfiles/u512.txt | 0
tools/{ => test}/h5jam/testfiles/u513.txt | 0
tools/test/h5jam/testh5jam.sh.in | 697 ++
tools/test/h5ls/CMakeLists.txt | 39 +
tools/test/h5ls/CMakeTests.cmake | 457 +
tools/test/h5ls/CMakeTestsVDS.cmake | 148 +
tools/test/h5ls/Makefile.am | 52 +
tools/test/h5ls/Makefile.in | 1466 +++
tools/test/h5ls/dynlib_ls.c | 89 +
tools/test/h5ls/h5ls_plugin.sh.in | 251 +
tools/test/h5ls/testh5ls.sh.in | 441 +
tools/test/h5ls/testh5lsvds.sh.in | 256 +
tools/test/h5repack/CMakeLists.txt | 79 +
tools/test/h5repack/CMakeTests.cmake | 1176 ++
tools/test/h5repack/Makefile.am | 68 +
tools/test/h5repack/Makefile.in | 1529 +++
tools/test/h5repack/dynlib_rpk.c | 95 +
tools/test/h5repack/dynlib_vrpk.c | 102 +
tools/test/h5repack/h5repack.sh.in | 1263 ++
tools/test/h5repack/h5repack_plugin.sh.in | 274 +
tools/test/h5repack/h5repacktst.c | 7187 +++++++++++
.../testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl | 0
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tools/{ => test}/h5repack/testfiles/README | 0
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tools/test/h5repack/testfiles/h5repack-help.txt | 136 +
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tools/{ => test}/h5repack/testfiles/ublock.bin | 0
tools/test/h5repack/testh5repack_detect_szip.c | 60 +
tools/test/h5stat/CMakeLists.txt | 22 +
tools/test/h5stat/CMakeTests.cmake | 248 +
tools/test/h5stat/Makefile.am | 46 +
tools/test/h5stat/Makefile.in | 1432 +++
tools/test/h5stat/h5stat_gentest.c | 447 +
tools/{ => test}/h5stat/testfiles/h5stat_dims1.ddl | 0
tools/{ => test}/h5stat/testfiles/h5stat_dims2.ddl | 0
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create mode 100644 tools/testfiles/tvlenstr_array.h5
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