Fwd: Errors at installing rgdal on Debian Buster

Agustin Lobo alobolistas at gmail.com
Tue Sep 12 10:25:08 UTC 2017


Hi!
I'm contacting you based on the output of dpkg -s gdal-bin
regarding a problem at installing package rgdal that seems related
to a gdal and/or libproj problem on Buster.
Thanks for any help,
Agus

---------- Forwarded message ----------
From: Agustin Lobo <alobolistas at gmail.com>
Date: Fri, Sep 8, 2017 at 3:48 PM
Subject: Errors at installing rgdal on Debian Buster
To: r-sig-geo <r-sig-geo at r-project.org>


I get lots of errors at installing rgdal on a recently upgraded machine to
Debian Buster and R3.3.3

$ R CMD INSTALL rgdal_1.2-8.tar.gz 2>&1 | tee rgdal.log

The whole output is here:
https://drive.google.com/open?id=0B_LsZU5NlOztb0ZYQzZZRDQ0WkU

The problem starts at:

configure: PROJ.4 version: 4.8.0
./configure: line 3725:  8390 Segmentation fault      ./proj_conf_test
checking PROJ.4: epsg found and readable... yes
./configure: line 3800:  8399 Segmentation fault      ./proj_conf_test
checking PROJ.4: conus found and readable... yes
configure: Package CPP flags:  -I/usr/include/gdal
configure: Package LIBS:  -L/usr/lib -lgdal -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/usr/share/R/include -DNDEBUG -I/usr/include/gdal
-I"/home/alobo/R/i686-pc-linux-gnu-library/3.3/sp/include"   -fpic  -g
-O2 -fdebug-prefix-map=/build/r-base-yDv1ct/r-base-3.3.3=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c OGR_write.cpp -o OGR_write.o
In file included from /usr/include/gdal/ogr_feature.h:35:0,
                 from /usr/include/gdal/ogrsf_frmts.h:35,
                 from OGR_write.cpp:2:
/usr/include/gdal/ogr_featurestyle.h:264:17: warning: override
controls (override/final) only available with -std=c++11 or
-std=gnu++11
     GBool Parse() CPL_OVERRIDE;

I've checked with stretch using a live usb and these problems are not present

Any idea?



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