[pysal] branch upstream updated (0b051eb -> 3615491)
Bas Couwenberg
sebastic at debian.org
Sun Sep 24 09:45:27 UTC 2017
This is an automated email from the git hooks/post-receive script.
sebastic pushed a change to branch upstream
in repository pysal.
from 0b051eb Imported Upstream version 1.13.0
new 3615491 New upstream version 1.14.2
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.coveragerc | 3 +
.github/ISSUE_TEMPLATE.md | 4 +-
.travis.yml | 2 +-
CHANGELOG.txt | 153 +++
README.rst | 44 +-
THANKS.txt | 15 +-
doc/source/conf.py | 6 +-
doc/source/developers/docs/index.rst | 4 +-
doc/source/developers/guidelines.rst | 2 +-
doc/source/index.rst | 2 +-
doc/source/library/weights/Contiguity.rst | 9 +
doc/source/users/tutorials/autocorrelation.rst | 4 +-
doc/source/users/tutorials/fileio.rst | 32 +-
doc/source/users/tutorials/region.rst | 2 +-
doc/source/users/tutorials/weights.rst | 98 +-
pysal/cg/kdtree.py | 22 +-
pysal/cg/segmentLocator.py | 6 +-
pysal/contrib/geotable/tests/test_utils.py | 61 +-
pysal/contrib/geotable/utils.py | 46 +-
pysal/contrib/glm/GLM_validate_estimation.ipynb | 444 +++++++++
pysal/contrib/glm/glm.py | 58 +-
pysal/contrib/glm/iwls.py | 34 +-
pysal/contrib/glm/utils.py | 59 ++
pysal/contrib/gwr/__init__.py | 4 +
pysal/contrib/gwr/diagnostics.py | 81 ++
pysal/contrib/gwr/gwr.py | 882 ++++++++++++++++
pysal/contrib/gwr/kernels.py | 124 +++
.../gwr/notebooks/GWR_Georgia_Example.ipynb | 354 +++++++
.../gwr/notebooks/GWR_Georgia_Prediction.ipynb | 1049 ++++++++++++++++++++
pysal/contrib/gwr/search.py | 143 +++
pysal/contrib/gwr/sel_bw.py | 256 +++++
pysal/contrib/gwr/tests/test_gwr.py | 849 ++++++++++++++++
pysal/contrib/gwr/tests/test_kernels.py | 84 ++
pysal/contrib/gwr/tests/test_sel_bw.py | 130 +++
pysal/contrib/network/klincs.py | 2 +-
pysal/contrib/spint/gravity.py | 20 +-
pysal/contrib/spint/tests/test_gravity.py | 15 +-
pysal/contrib/viz/mapping.py | 10 +-
pysal/core/IOHandlers/arcgis_swm.py | 123 ++-
pysal/core/util/shapefile.py | 7 +
pysal/esda/geary.py | 18 +-
pysal/esda/mapclassify.py | 2 +-
pysal/esda/moran.py | 36 +-
pysal/esda/smoothing.py | 96 +-
pysal/esda/tests/test_geary.py | 16 +-
pysal/esda/tests/test_moran.py | 8 +
pysal/esda/tests/test_smoothing.py | 104 +-
pysal/examples/clearwater/clearwater_BS_F.ctl | 42 +
.../clearwater/clearwater_BS_F_listwise.csv | 240 +++++
.../clearwater/clearwater_BS_F_summary.txt | 173 ++++
pysal/examples/clearwater/clearwater_BS_NN.ctl | 42 +
.../clearwater/clearwater_BS_NN_listwise.csv | 240 +++++
.../clearwater/clearwater_BS_NN_summary.txt | 179 ++++
pysal/examples/clearwater/clearwater_GS_F.ctl | 42 +
.../clearwater/clearwater_GS_F_listwise.csv | 240 +++++
.../clearwater/clearwater_GS_F_summary.txt | 175 ++++
pysal/examples/clearwater/clearwater_GS_NN.ctl | 42 +
.../clearwater/clearwater_GS_NN_listwise.csv | 240 +++++
.../clearwater/clearwater_GS_NN_summary.txt | 174 ++++
pysal/examples/clearwater/landslides.csv | 240 +++++
pysal/examples/clearwater/quads.dbf | Bin 0 -> 1788 bytes
pysal/examples/clearwater/quads.shp | Bin 0 -> 2004 bytes
pysal/examples/clearwater/quads.shx | Bin 0 -> 212 bytes
pysal/examples/clearwater/streams.dbf | Bin 0 -> 1437154 bytes
pysal/examples/clearwater/streams.shp | Bin 0 -> 2130324 bytes
pysal/examples/clearwater/streams.shx | Bin 0 -> 55348 bytes
pysal/examples/georgia/FB.p | 94 ++
pysal/examples/georgia/GData_utm.csv | 160 +++
pysal/examples/georgia/G_utm.dbf | Bin 0 -> 47706 bytes
pysal/examples/georgia/G_utm.sbn | Bin 0 -> 1964 bytes
pysal/examples/georgia/G_utm.sbx | Bin 0 -> 340 bytes
pysal/examples/georgia/G_utm.shp | Bin 0 -> 243584 bytes
pysal/examples/georgia/G_utm.shx | Bin 0 -> 1476 bytes
pysal/examples/georgia/XB.p | 37 +
pysal/examples/georgia/err.p | 37 +
pysal/examples/georgia/georgia_BS_F.ctl | 45 +
pysal/examples/georgia/georgia_BS_F_listwise.csv | 160 +++
pysal/examples/georgia/georgia_BS_F_summary.txt | 170 ++++
pysal/examples/georgia/georgia_BS_NN.ctl | 45 +
pysal/examples/georgia/georgia_BS_NN_listwise.csv | 160 +++
pysal/examples/georgia/georgia_BS_NN_summary.txt | 170 ++++
pysal/examples/georgia/georgia_GS_F.ctl | 45 +
pysal/examples/georgia/georgia_GS_F_listwise.csv | 160 +++
pysal/examples/georgia/georgia_GS_F_summary.txt | 168 ++++
pysal/examples/georgia/georgia_GS_NN.ctl | 45 +
pysal/examples/georgia/georgia_GS_NN_listwise.csv | 160 +++
pysal/examples/georgia/georgia_GS_NN_summary.txt | 165 +++
pysal/examples/londonhp/londonhp.dbf | Bin 0 -> 81885 bytes
pysal/examples/londonhp/londonhp.shp | Bin 0 -> 8948 bytes
.../SohoPeople.shx => londonhp/londonhp.shx} | Bin 2692 -> 2628 bytes
pysal/examples/tokyo/Readme_tokyomortality.txt | 55 +
pysal/examples/tokyo/SampleTokyoMortalityGWPR.ctl | 40 +
pysal/examples/tokyo/Tokyomortality.csv | 1 +
pysal/examples/tokyo/Tokyomortality.txt | 263 +++++
pysal/examples/tokyo/tokyo_BS_F.ctl | 41 +
pysal/examples/tokyo/tokyo_BS_F_listwise.csv | 263 +++++
pysal/examples/tokyo/tokyo_BS_F_summary.txt | 183 ++++
pysal/examples/tokyo/tokyo_BS_NN.ctl | 41 +
pysal/examples/tokyo/tokyo_BS_NN_OFF.ctl | 40 +
pysal/examples/tokyo/tokyo_BS_NN_OFF_listwise.csv | 263 +++++
pysal/examples/tokyo/tokyo_BS_NN_OFF_summary.txt | 148 +++
pysal/examples/tokyo/tokyo_BS_NN_listwise.csv | 263 +++++
pysal/examples/tokyo/tokyo_BS_NN_summary.txt | 162 +++
pysal/examples/tokyo/tokyo_GS_F.ctl | 41 +
pysal/examples/tokyo/tokyo_GS_F_listwise.csv | 263 +++++
pysal/examples/tokyo/tokyo_GS_F_summary.txt | 183 ++++
pysal/examples/tokyo/tokyo_GS_NN.ctl | 41 +
pysal/examples/tokyo/tokyo_GS_NN_listwise.csv | 263 +++++
pysal/examples/tokyo/tokyo_GS_NN_summary.txt | 162 +++
pysal/examples/tokyo/tokyomet262.dbf | Bin 0 -> 8514 bytes
pysal/examples/tokyo/tokyomet262.prj | 1 +
pysal/examples/tokyo/tokyomet262.shp | Bin 0 -> 184536 bytes
pysal/examples/tokyo/tokyomet262.shp.xml | 2 +
pysal/examples/tokyo/tokyomet262.shx | Bin 0 -> 2196 bytes
pysal/examples/wmat/us48_CONTIGUITY_EDGES_ONLY.swm | Bin 0 -> 2350 bytes
pysal/examples/wmat/us48_INVERSE_DISTANCE.swm | Bin 0 -> 3654 bytes
pysal/network/network.py | 78 +-
pysal/network/tests/test_network.py | 5 +
pysal/network/util.py | 49 +-
pysal/spatial_dynamics/util.py | 8 +-
pysal/spreg/error_sp_hom.py | 4 +-
pysal/spreg/summary_output.py | 2 +-
pysal/spreg/tests/test_error_sp_het_regimes.py | 2 +-
pysal/spreg/tests/test_error_sp_hom_regimes.py | 2 +-
pysal/spreg/tests/test_error_sp_regimes.py | 2 +-
pysal/spreg/utils.py | 2 +-
pysal/version.py | 4 +-
pysal/weights/Contiguity.py | 62 +-
pysal/weights/Distance.py | 8 +-
pysal/weights/spatial_lag.py | 15 +-
pysal/weights/tests/test_Contiguity.py | 7 +
pysal/weights/tests/test_Distance.py | 18 +-
pysal/weights/tests/test_spatial_lag.py | 4 +-
pysal/weights/tests/test_swm_IO.py | 42 +
pysal/weights/util.py | 17 +-
requirements_dev.txt | 2 +-
rtd.txt | 1 +
setup.py | 4 +-
138 files changed, 12091 insertions(+), 379 deletions(-)
create mode 100644 pysal/contrib/glm/GLM_validate_estimation.ipynb
create mode 100644 pysal/contrib/gwr/__init__.py
create mode 100644 pysal/contrib/gwr/diagnostics.py
create mode 100644 pysal/contrib/gwr/gwr.py
create mode 100644 pysal/contrib/gwr/kernels.py
create mode 100644 pysal/contrib/gwr/notebooks/GWR_Georgia_Example.ipynb
create mode 100644 pysal/contrib/gwr/notebooks/GWR_Georgia_Prediction.ipynb
create mode 100644 pysal/contrib/gwr/search.py
create mode 100644 pysal/contrib/gwr/sel_bw.py
create mode 100644 pysal/contrib/gwr/tests/test_gwr.py
create mode 100644 pysal/contrib/gwr/tests/test_kernels.py
create mode 100644 pysal/contrib/gwr/tests/test_sel_bw.py
create mode 100755 pysal/examples/clearwater/clearwater_BS_F.ctl
create mode 100755 pysal/examples/clearwater/clearwater_BS_F_listwise.csv
create mode 100755 pysal/examples/clearwater/clearwater_BS_F_summary.txt
create mode 100755 pysal/examples/clearwater/clearwater_BS_NN.ctl
create mode 100755 pysal/examples/clearwater/clearwater_BS_NN_listwise.csv
create mode 100755 pysal/examples/clearwater/clearwater_BS_NN_summary.txt
create mode 100755 pysal/examples/clearwater/clearwater_GS_F.ctl
create mode 100755 pysal/examples/clearwater/clearwater_GS_F_listwise.csv
create mode 100755 pysal/examples/clearwater/clearwater_GS_F_summary.txt
create mode 100755 pysal/examples/clearwater/clearwater_GS_NN.ctl
create mode 100755 pysal/examples/clearwater/clearwater_GS_NN_listwise.csv
create mode 100755 pysal/examples/clearwater/clearwater_GS_NN_summary.txt
create mode 100755 pysal/examples/clearwater/landslides.csv
create mode 100755 pysal/examples/clearwater/quads.dbf
create mode 100755 pysal/examples/clearwater/quads.shp
create mode 100755 pysal/examples/clearwater/quads.shx
create mode 100755 pysal/examples/clearwater/streams.dbf
create mode 100755 pysal/examples/clearwater/streams.shp
create mode 100755 pysal/examples/clearwater/streams.shx
create mode 100644 pysal/examples/georgia/FB.p
create mode 100755 pysal/examples/georgia/GData_utm.csv
create mode 100755 pysal/examples/georgia/G_utm.dbf
create mode 100755 pysal/examples/georgia/G_utm.sbn
create mode 100755 pysal/examples/georgia/G_utm.sbx
create mode 100755 pysal/examples/georgia/G_utm.shp
create mode 100755 pysal/examples/georgia/G_utm.shx
create mode 100644 pysal/examples/georgia/XB.p
create mode 100644 pysal/examples/georgia/err.p
create mode 100755 pysal/examples/georgia/georgia_BS_F.ctl
create mode 100755 pysal/examples/georgia/georgia_BS_F_listwise.csv
create mode 100755 pysal/examples/georgia/georgia_BS_F_summary.txt
create mode 100755 pysal/examples/georgia/georgia_BS_NN.ctl
create mode 100755 pysal/examples/georgia/georgia_BS_NN_listwise.csv
create mode 100755 pysal/examples/georgia/georgia_BS_NN_summary.txt
create mode 100755 pysal/examples/georgia/georgia_GS_F.ctl
create mode 100755 pysal/examples/georgia/georgia_GS_F_listwise.csv
create mode 100755 pysal/examples/georgia/georgia_GS_F_summary.txt
create mode 100755 pysal/examples/georgia/georgia_GS_NN.ctl
create mode 100755 pysal/examples/georgia/georgia_GS_NN_listwise.csv
create mode 100755 pysal/examples/georgia/georgia_GS_NN_summary.txt
create mode 100644 pysal/examples/londonhp/londonhp.dbf
create mode 100644 pysal/examples/londonhp/londonhp.shp
copy pysal/examples/{snow_maps/SohoPeople.shx => londonhp/londonhp.shx} (95%)
create mode 100755 pysal/examples/tokyo/Readme_tokyomortality.txt
create mode 100755 pysal/examples/tokyo/SampleTokyoMortalityGWPR.ctl
create mode 100644 pysal/examples/tokyo/Tokyomortality.csv
create mode 100755 pysal/examples/tokyo/Tokyomortality.txt
create mode 100755 pysal/examples/tokyo/tokyo_BS_F.ctl
create mode 100755 pysal/examples/tokyo/tokyo_BS_F_listwise.csv
create mode 100755 pysal/examples/tokyo/tokyo_BS_F_summary.txt
create mode 100755 pysal/examples/tokyo/tokyo_BS_NN.ctl
create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF.ctl
create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF_listwise.csv
create mode 100644 pysal/examples/tokyo/tokyo_BS_NN_OFF_summary.txt
create mode 100755 pysal/examples/tokyo/tokyo_BS_NN_listwise.csv
create mode 100755 pysal/examples/tokyo/tokyo_BS_NN_summary.txt
create mode 100755 pysal/examples/tokyo/tokyo_GS_F.ctl
create mode 100755 pysal/examples/tokyo/tokyo_GS_F_listwise.csv
create mode 100755 pysal/examples/tokyo/tokyo_GS_F_summary.txt
create mode 100755 pysal/examples/tokyo/tokyo_GS_NN.ctl
create mode 100755 pysal/examples/tokyo/tokyo_GS_NN_listwise.csv
create mode 100755 pysal/examples/tokyo/tokyo_GS_NN_summary.txt
create mode 100755 pysal/examples/tokyo/tokyomet262.dbf
create mode 100755 pysal/examples/tokyo/tokyomet262.prj
create mode 100755 pysal/examples/tokyo/tokyomet262.shp
create mode 100755 pysal/examples/tokyo/tokyomet262.shp.xml
create mode 100755 pysal/examples/tokyo/tokyomet262.shx
create mode 100644 pysal/examples/wmat/us48_CONTIGUITY_EDGES_ONLY.swm
create mode 100644 pysal/examples/wmat/us48_INVERSE_DISTANCE.swm
mode change 100755 => 100644 pysal/spreg/utils.py
create mode 100644 pysal/weights/tests/test_swm_IO.py
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