Bug#946680: [hdf5] FTBS with openmpi 4.0.2-4+b1

Christophe Trophime christrophime at googlemail.com
Fri Dec 13 16:06:00 GMT 2019


Package: hdf5
Version: 1.10.4+repack
Severity: normal

--- System information. ---
Architecture:
Kernel:       Linux 5.3.0-2-amd64

Debian Release: bullseye/sid
  500 testing         ftp.fr.debian.org

When compiling with openmpi 4:

.../../../src/H5Smpio.c:1503:9: error: call to 'MPI_Type_extent' declared
with attribute error: MPI_Type_extent was removed in MPI-3.0.  Use
MPI_Type_get_extent instead.
 1503 |         MPI_Type_extent (old_type, &old_extent);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../src/H5Smpio.c: In function 'H5S_mpio_hyper_type':
../../../src/H5Smpio.c:882:13: error: call to 'MPI_Type_extent' declared
with attribute error: MPI_Type_extent was removed in MPI-3.0.  Use
MPI_Type_get_extent instead.
  882 |             MPI_Type_extent (inner_type, &inner_extent);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: *** [Makefile:1603: H5Smpio.lo] Error 1
make[2]: Leaving directory
'/build/hdf5-1.10.4+repack/debian/build-openmpi/src'
make[1]: *** [Makefile:1160: all] Error 2
make[1]: Leaving directory
'/build/hdf5-1.10.4+repack/debian/build-openmpi/src'

Best
c
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