Bug#951952: hdf5: FTBFS: ../../../src/H5Smpio.c:1503:9: error: call to ‘MPI_Type_extent’ declared with attribute error: MPI_Type_extent was removed in MPI-3.0. Use MPI_Type_get_extent instead.

[Lucas Nussbaum]

Source: hdf5
Version: 1.10.4+repack-10
Severity: serious
Justification: FTBFS on amd64
Tags: buster sid
Usertags: ftbfs-20200222 ftbfs-buster

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> /bin/bash ../libtool  --tag=CC   --mode=link mpicc.openmpi -std=c99  -pedantic -Wall -Wextra -Wbad-function-cast -Wc++-compat -Wcast-align -Wcast-qual -Wconversion -Wdeclaration-after-statement -Wdisabled-optimization -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-include-dirs -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-arith -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-default -Wswitch-enum -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings -finline-functions -s -Wno-inline -Wno-aggregate-return -Wno-missing-format-attribute -Wno-missing-noreturn -O -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,--version-script,../../../debian/map_mpi.ver -Wl,-z,relro -o H5make_libsettings H5make_libsettings.o  -lsz -lz -ldl -lm 
> ../../../src/H5Smpio.c:1503:9: error: call to ‘MPI_Type_extent’ declared with attribute error: MPI_Type_extent was removed in MPI-3.0.  Use MPI_Type_get_extent instead.
>  1503 |         MPI_Type_extent (old_type, &old_extent);
>       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> ../../../src/H5Smpio.c: In function ‘H5S_mpio_hyper_type’:
> ../../../src/H5Smpio.c:882:13: error: call to ‘MPI_Type_extent’ declared with attribute error: MPI_Type_extent was removed in MPI-3.0.  Use MPI_Type_get_extent instead.
>   882 |             MPI_Type_extent (inner_type, &inner_extent);
>       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> make[4]: *** [Makefile:1603: H5Smpio.lo] Error 1

The full build log is available from:
   http://qa-logs.debian.net/2020/02/22/hdf5_1.10.4+repack-10_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.