[Git][debian-gis-team/pyepr][master] 6 commits: New upstream version 1.3.1
Antonio Valentino (@antonio.valentino)
gitlab at salsa.debian.org
Sun Sep 20 08:56:32 BST 2026
Antonio Valentino pushed to branch master at Debian GIS Project / pyepr
Commits:
5c1489e3 by Antonio Valentino at 2026-09-20T07:42:13+00:00
New upstream version 1.3.1
- - - - -
ff0af5bb by Antonio Valentino at 2026-09-20T07:42:15+00:00
Update upstream source from tag 'upstream/1.3.1'
Update to upstream version '1.3.1'
with Debian dir c59ed22140ca4a89fa988bfd173aac4f1b765b83
- - - - -
6f97cc86 by Antonio Valentino at 2026-09-20T07:42:55+00:00
New upstream release
- - - - -
804af0dd by Antonio Valentino at 2026-09-20T07:49:03+00:00
Refresh all patches
- - - - -
88d0ab89 by Antonio Valentino at 2026-09-20T07:52:53+00:00
Update homepage URL
- - - - -
73730393 by Antonio Valentino at 2026-09-20T07:53:23+00:00
Set distribution to unstable
- - - - -
27 changed files:
- .flake8
- + .github/dependabot.yml
- .github/workflows/ci.yml
- .github/workflows/docs.yml
- .github/workflows/lint.yml
- .github/workflows/wheels.yml
- .gitignore
- .pre-commit-config.yaml
- .readthedocs.yaml
- MANIFEST.in
- Makefile
- README.rst
- debian/changelog
- debian/control
- debian/patches/0001-Only-use-local-files-for-generating-sphinx-doc.patch
- debian/patches/0002-Use-local-mathjax.patch
- docs/NEWS.rst
- docs/_static/empty.txt → docs/_static/.gitkeep
- docs/conf.py
- docs/index.rst
- docs/spelling_wordlist.txt
- pyproject.toml
- − requirements-dev.txt
- setup.py
- src/epr/__init__.py
- + tests/data/registry.txt
- tests/test_all.py
Changes:
=====================================
.flake8
=====================================
@@ -1,4 +1,5 @@
[flake8]
+min-python-version = 3.11
# max_line_length = 79
# max-complexity = 10
doctests = true
@@ -23,6 +24,10 @@ doctests = true
# - I # flake8-import-order: not compatible with isort
# - SC # flake8-spellcheck: too aggressive
# - CNL # flake8-class-newline: incompatible with black
+# - JS # flake8-multiline-containers: not compatibel with ruff preview
+# - ANN # flake8-annotations: too aggressive
+# - C # flake8-commas: too aggressive
+# - PT # flake8-pytest-style: test suite compatibel with unittest
extend-ignore = E203,E501,E701,W503,SC,CNL
extend-select = W504,B950
per-file-ignores =
=====================================
.github/dependabot.yml
=====================================
@@ -0,0 +1,15 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+ - package-ecosystem: "github-actions"
+ directory: "/"
+ schedule:
+ interval: "weekly"
+ groups:
+ github-actions:
+ patterns:
+ - "*"
=====================================
.github/workflows/ci.yml
=====================================
@@ -27,19 +27,16 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
- python-version: ['3.10', '3.11', '3.12', '3.13', '3.14', '3.14t']
- # include:
- # - os: ubuntu-latest
- # python-version: 'pypy3.9'
+ python-version: ['3.11', '3.12', '3.13', '3.14', '3.14t']
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
fetch-depth: 0
submodules: 'true'
- name: Set up Python ${{ matrix.python-version }}
- uses: actions/setup-python at v6
+ uses: actions/setup-python at v7
with:
python-version: ${{ matrix.python-version }}
@@ -63,7 +60,6 @@ jobs:
shell: bash
run: |
python -m pip install --group test
- if [ -f requirements-test.txt ]; then pip install -r requirements-test.txt; fi
- name: Test with pytest
run: |
@@ -77,16 +73,17 @@ jobs:
syslibs:
- runs-on: ubuntu-latest
+ runs-on: ubuntu-26.04
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
fetch-depth: 0
submodules: true
- name: Install system dependencies
run: |
+ sudo apt update
sudo apt-get -y install \
libepr-api-dev \
python3-all-dev \
@@ -110,12 +107,11 @@ jobs:
env:
PYEPR_EPRAPI_SRC: ""
run: |
- WHEELNAME=$(ls dist/${PACKAGE}-*.whl)
- python -m pip install ${WHEELNAME}
+ python -m pip install --pre --only-binary ${PACKAGE} -f dist/ ${PACKAGE}
- name: Install test dependencies
run: |
- sudo apt-get -y install python3-pytest
+ sudo apt-get -y install python3-pytest python3-pooch
- name: Test with pytest
run: |
@@ -140,13 +136,13 @@ jobs:
PYTHON: "3.14"
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
fetch-depth: 0
submodules: true
- name: Set up Python ${{ matrix.python-version }}
- uses: actions/setup-python at v6
+ uses: actions/setup-python at v7
with:
python-version: ${{ matrix.python-version }}
@@ -154,8 +150,7 @@ jobs:
shell: bash
run: |
python -m pip install --upgrade setuptools pip
- python -m pip install --group dev
- if [ -f requirements-dev.txt ]; then python -m pip install -r requirements-dev.txt; fi
+ python -m pip install --group coverage
- name: Build and install
run: |
@@ -171,7 +166,7 @@ jobs:
print('Python: %s' % sys.version)"
- name: Upload coverage to Codecov
- uses: codecov/codecov-action at v5
+ uses: codecov/codecov-action at v7
with:
env_vars: OS,PYTHON
verbose: true
=====================================
.github/workflows/docs.yml
=====================================
@@ -16,13 +16,13 @@ jobs:
runs-on: ubuntu-latest
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
fetch-depth: 0
submodules: 'true'
- name: Set up Python
- uses: actions/setup-python at v6
+ uses: actions/setup-python at v7
with:
python-version: "3.x"
@@ -31,8 +31,7 @@ jobs:
run: |
python -m pip install --upgrade pip
python -m pip install --group docs
- python -m pip install .
- if [ -f requirements-dev.txt ]; then python -m pip install -r requirements-dev.txt; fi
+ python -m pip install .[all]
- name: Build docs
run: |
=====================================
.github/workflows/lint.yml
=====================================
@@ -19,10 +19,10 @@ jobs:
runs-on: ubuntu-latest
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
- name: Set up Python
- uses: actions/setup-python at v6
+ uses: actions/setup-python at v7
with:
python-version: "3.x"
@@ -31,7 +31,6 @@ jobs:
run: |
python -m pip install --upgrade pip
python -m pip install --group lint
- if [ -f requirements-lint.txt ]; then pip install -r requirements-lint.txt; fi
- name: Lint (flake8)
run: |
=====================================
.github/workflows/wheels.yml
=====================================
@@ -23,12 +23,12 @@ jobs:
runs-on: ubuntu-latest
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
submodules: 'true'
- name: Set up Python
- uses: actions/setup-python at v6
+ uses: actions/setup-python at v7
with:
python-version: "3.x"
@@ -43,7 +43,7 @@ jobs:
python -m twine check dist/*
- name: Upload build artifacts
- uses: actions/upload-artifact at v6
+ uses: actions/upload-artifact at v7
with:
name: dist
path: |
@@ -58,15 +58,17 @@ jobs:
os: [ubuntu-latest, macos-latest, windows-latest]
steps:
- - uses: actions/checkout at v6
+ - uses: actions/checkout at v7
with:
fetch-depth: 0
submodules: 'true'
- name: Build wheels
- uses: pypa/cibuildwheel at v3.3.0
+ uses: pypa/cibuildwheel at v4.2.1
+ env:
+ PY_LIMITED_API: AUTO
- - uses: actions/upload-artifact at v6
+ - uses: actions/upload-artifact at v7
with:
name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
path: ./wheelhouse/*.whl
=====================================
.gitignore
=====================================
@@ -205,6 +205,3 @@ cython_debug/
marimo/_static/
marimo/_lsp/
__marimo__/
-
-# misc
-SciTEDirectory.properties
=====================================
.pre-commit-config.yaml
=====================================
@@ -15,9 +15,9 @@ repos:
- id: detect-private-key
- repo: https://github.com/astral-sh/ruff-pre-commit
- rev: v0.14.10
+ rev: v0.16.6
hooks:
- - id: ruff
+ - id: ruff-check
args: [--fix, --config=pyproject.toml]
- id: ruff-format
@@ -25,7 +25,7 @@ repos:
rev: v3.21.2
hooks:
- id: pyupgrade
- args: [--py310-plus]
+ args: [--py311-plus]
# - repo: https://github.com/pycqa/flake8
# rev: 7.3.0
@@ -36,21 +36,21 @@ repos:
# rev: 6.3.0
# hooks:
# - id: pydocstyle
-# exclude: tests|examples|data|docs
+# exclude: tests|examples|data|docs|setup.py
# - repo: https://github.com/pycqa/isort
-# rev: 7.0.0
+# rev: 9.0.1
# hooks:
# - id: isort
# name: isort (python)
# - repo: https://github.com/psf/black-pre-commit-mirror
-# rev: 25.12.0
+# rev: 26.5.1
# hooks:
# - id: black
-# language_version: python3.10
+# language_version: python3.11
# - id: black-jupyter
-# language_version: python3.10
+# language_version: python3.11
# - repo: https://github.com/tweag/FawltyDeps
# rev: v0.20.0
@@ -59,7 +59,7 @@ repos:
# - id: check-unused
# - repo: https://github.com/pre-commit/mirrors-mypy
-# rev: v1.19.1
+# rev: v2.3.1
# hooks:
# - id: mypy
# additional_dependencies:
@@ -71,7 +71,7 @@ repos:
# )
# - repo: https://github.com/codespell-project/codespell
-# rev: v2.4.1
+# rev: v2.4.3
# hooks:
# - id: codespell
# additional_dependencies: [tomli]
=====================================
.readthedocs.yaml
=====================================
@@ -6,9 +6,14 @@ version: 2
# Set the OS, Python version and other tools you might need
build:
- os: ubuntu-22.04
+ os: ubuntu-lts-latest
tools:
- python: "3"
+ python: "latest"
+ jobs:
+ install:
+ # Since the install step is overridden, pip is no longer updated automatically.
+ - pip install --upgrade pip
+ - pip install --group docs
# Build documentation in the "docs/" directory with Sphinx
sphinx:
@@ -27,6 +32,5 @@ formats:
python:
install:
- - requirements: requirements-dev.txt
- method: pip
path: .
=====================================
MANIFEST.in
=====================================
@@ -1,5 +1,6 @@
recursive-include LICENSES *.txt
recursive-include tests *.py
+include tests/data/registry.txt
recursive-include src/epr *.pyx *.pxd
recursive-include extern/epr-api/src *.c *.h
=====================================
Makefile
=====================================
@@ -7,7 +7,7 @@ TARGET=epr
CYTHON=$(PYTHON) -m cython
CYTHONFLAGS=-3
-TEST_DATSET = tests/$(shell grep N1 tests/test_all.py | cut -d '"' -f 2)
+TEST_DATSET = tests/data/$(shell grep N1 tests/test_all.py | cut -d '"' -f 2)
EPRAPIROOT = extern/epr-api
@@ -52,12 +52,11 @@ coverage: clean ext-coverage
env PYTHONPATH=src $(PYTHON) -m pytest --doctest-modules --cov=$(TARGET) --cov-report=html --cov-report=term src/$(TARGET) tests
clean:
- # $(PYTHON) setup.py clean --all
$(RM) -r src/*.*-info build
find . -name __pycache__ -type d -exec $(RM) -r {} +
# $(RM) -r __pycache__ */__pycache__ */*/__pycache__ */*/*/__pycache__
$(RM) src/$(TARGET)/*.c src/$(TARGET)/*.cpp src/$(TARGET)/*.so src/$(TARGET)/*.o
- if [ -f docs/Makefile ] ; then $(MAKE) -C docs clean; fi
+ # if [ -f docs/Makefile ] ; then $(MAKE) -C docs clean; fi
$(RM) -r docs/_build
$(RM) MANIFEST
find . -name '*~' -delete
@@ -90,6 +89,7 @@ lint:
docs:
mkdir -p docs/_static
$(MAKE) -C docs html
+ $(MAKE) -C docs doctest
$(MAKE) -C docs linkcheck
$(MAKE) -C docs spelling
=====================================
README.rst
=====================================
@@ -6,7 +6,7 @@ ENVISAT Product Reader Python API
:Author: Antonio Valentino
:Contact: antonio.valentino at tiscali.it
:Copyright: 2011-2026, Antonio Valentino <antonio.valentino at tiscali.it>
-:Version: 1.3.0
+:Version: 1.3.1
|PyPI Status| |GHA Status| |Documentation Status| |Python Versions| |License| |Wheels| |Coverage|
=====================================
debian/changelog
=====================================
@@ -1,9 +1,16 @@
-pyepr (1.3.0-3) UNRELEASED; urgency=medium
+pyepr (1.3.1-1) unstable; urgency=medium
- * Team upload.
+ [ Bas Couwenberg ]
* Bump Standards-Version to 4.7.4, no changes.
- -- Bas Couwenberg <sebastic at debian.org> Sat, 04 Apr 2026 10:18:36 +0200
+ [ Antonio Valentino ]
+ * New upstream release.
+ * debian/patches:
+ - Refresh all patches.
+ * debian/control:
+ - Update homepage URL.
+
+ -- Antonio Valentino <antonio.valentino at tiscali.it> Sun, 20 Sep 2026 07:52:57 +0000
pyepr (1.3.0-2) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -24,7 +24,7 @@ Build-Depends: debhelper-compat (= 13),
Standards-Version: 4.7.4
Vcs-Browser: https://salsa.debian.org/debian-gis-team/pyepr
Vcs-Git: https://salsa.debian.org/debian-gis-team/pyepr.git
-Homepage: https://avalentino.github.io/pyepr
+Homepage: https://github.com/avalentino/pyepr
Description: Python ENVISAT Product Reader API
PyEPR provides Python bindings for the ENVISAT Product Reader C API
(EPR API) for reading satellite data from ENVISAT ESA (European Space
=====================================
debian/patches/0001-Only-use-local-files-for-generating-sphinx-doc.patch
=====================================
@@ -13,10 +13,10 @@ Forwarded: not-needed
1 file changed, 13 insertions(+), 11 deletions(-)
diff --git a/docs/conf.py b/docs/conf.py
-index fffbd04..d0ebc34 100644
+index 011dfbe..ff74e85 100644
--- a/docs/conf.py
+++ b/docs/conf.py
-@@ -82,15 +82,15 @@ html_static_path = ["_static"]
+@@ -92,15 +92,15 @@ html_static_path = ["_static"]
html_last_updated_fmt = "%b %d, %Y"
html_sidebars = {
"index": [
@@ -41,8 +41,8 @@ index fffbd04..d0ebc34 100644
],
}
html_domain_indices = False
-@@ -152,8 +152,10 @@ linkcheck_ignore = [f"https://pyepr.readthedocs.io/en/v{version}"]
- # -- Options for intersphinx extension ---------------------------------------
+@@ -144,8 +144,10 @@ linkcheck_ignore = [
+ # https://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html#configuration
intersphinx_mapping = {
- "python": ("https://docs.python.org/3", None),
@@ -53,4 +53,4 @@ index fffbd04..d0ebc34 100644
+ # "/usr/share/doc/python-numpy-doc/html/objects.inv"),
}
- # -- Options for extlinks extension ------------------------------------------
+
=====================================
debian/patches/0002-Use-local-mathjax.patch
=====================================
@@ -8,14 +8,14 @@ Forwarded: not-needed
1 file changed, 1 insertion(+)
diff --git a/docs/conf.py b/docs/conf.py
-index d0ebc34..0aefcca 100644
+index ff74e85..7a6d2a7 100644
--- a/docs/conf.py
+++ b/docs/conf.py
-@@ -101,6 +101,7 @@ html_context = {
+@@ -111,6 +111,7 @@ html_context = {
"github_version": "master",
"conf_py_path": "/docs/",
}
+mathjax_path = "file:///usr/share/javascript/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML"
- # -- Options for HTMLHelp output ------------------------------------------
+ # -- Options for LaTeX output ------------------------------------------------
=====================================
docs/NEWS.rst
=====================================
@@ -2,6 +2,21 @@ Change history
==============
+PyEPR 1.3.1 (16/09/2026)
+------------------------
+
+* Update project fields.
+* The minimum required Cython_ version is now v3.1.
+* Update pre-commit configuration.
+* Update project configuration files.
+* Use Pooch_ for test data management.
+* Support builds with the Python stable API.
+* Drop support for Python < 3.11 and numpy < 2.
+* Build wheels for stable API ``cp311``.
+
+.. _Pooch: https://www.fatiando.org/pooch/latest/
+
+
PyEPR 1.3.0 (03/01/2026)
------------------------
=====================================
docs/_static/empty.txt → docs/_static/.gitkeep
=====================================
=====================================
docs/conf.py
=====================================
@@ -3,15 +3,8 @@
# For the full list of built-in configuration values, see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
-# -- Project information -----------------------------------------------------
-# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
-
-project = "PyEPR"
-copyright = "2011-2026, Antonio Valentino"
-author = "Antonio Valentino"
-
-
-def get_version(filename):
+# -- Version utils -----------------------------------------------------------
+def _get_version(filename):
import re
from packaging.version import parse as Version
@@ -27,11 +20,20 @@ def get_version(filename):
return Version(mobj.group("version"))
-_version = get_version("../src/epr/__init__.py")
+# -- Project information -----------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
+
+project = "PyEPR"
+copyright = "2011-2026, Antonio Valentino"
+author = "Antonio Valentino"
+
+
+_version = _get_version("../src/epr/__init__.py")
version = _version.base_version
release = str(_version)
+
# -- General configuration ---------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration
@@ -40,7 +42,7 @@ extensions = [
# "sphinx.ext.autosectionlabel",
# "sphinx.ext.autosummary",
# "sphinx.ext.coverage",
- # "sphinx.ext.doctest",
+ "sphinx.ext.doctest",
# "sphinx.ext.duration",
"sphinx.ext.extlinks",
# "sphinx.ext.githubpages",
@@ -61,15 +63,23 @@ extensions = [
"IPython.sphinxext.ipython_directive",
]
+try:
+ import sphinxcontrib.spelling # noqa: F401
+except ImportError:
+ pass
+else:
+ extensions.append("sphinxcontrib.spelling")
+
templates_path = ["_templates"]
master_doc = "index"
exclude_patterns = [
"_build",
"Thumbs.db",
".DS_Store",
- "**/empty.txt",
+ "**/.gitkeep",
]
+
# -- Options for HTML output -------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
@@ -102,11 +112,9 @@ html_context = {
"conf_py_path": "/docs/",
}
-# -- Options for HTMLHelp output ------------------------------------------
-htmlhelp_basename = "PyEPRdoc"
-
-# -- Options for LaTeX output ---------------------------------------------
+# -- Options for LaTeX output ------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-latex-output
latex_elements = {
"papersize": "a4paper",
@@ -119,49 +127,37 @@ latex_documents = [
]
latex_domain_indices = False
-# -- Options for manual page output ---------------------------------------
-
-man_pages = [(master_doc, "pyepr", "PyEPR Documentation", [author], 1)]
-
-# -- Options for Texinfo output -------------------------------------------
-
-texinfo_documents = [
- (
- master_doc,
- "PyEPR",
- "PyEPR Documentation",
- author,
- "PyEPR",
- "One line description of project.",
- "Miscellaneous",
- ),
-]
-
-# -- Options for Epub output ----------------------------------------------
-
-epub_exclude_files = ["search.html"]
-
# -- Options for linkcheck ------------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-the-linkcheck-builder
-linkcheck_ignore = [f"https://pyepr.readthedocs.io/en/v{version}"]
+linkcheck_ignore = [
+ f"https://pyepr.readthedocs.io/en/v{version}",
+ "https://www.openhub.net",
+ "https://www.gnu.org/licenses/gpl-3.0.html",
+]
# -- Extension configuration -------------------------------------------------
# -- Options for intersphinx extension ---------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/extensions/intersphinx.html#configuration
intersphinx_mapping = {
"python": ("https://docs.python.org/3", None),
"numpy": ("https://docs.scipy.org/doc/numpy", None),
}
+
# -- Options for extlinks extension ------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/extensions/extlinks.html#module-sphinx.ext.extlinks
extlinks = {
"issue": ("https://github.com/avalentino/pyepr/issues/%s", "gh-%s"),
}
+
# -- Options for todo extension ----------------------------------------------
+# https://www.sphinx-doc.org/en/master/usage/extensions/todo.html#configuration
todo_include_todos = True
=====================================
docs/index.rst
=====================================
@@ -77,6 +77,7 @@ ENVISAT Product Reader Python API
============ ======================================================
PyEPR latest https://pyepr.readthedocs.io/en/latest (development)
+ PyEPR 1.3.1 https://pyepr.readthedocs.io/en/v1.3.1
PyEPR 1.3.0 https://pyepr.readthedocs.io/en/v1.3.0
PyEPR 1.2.0 https://pyepr.readthedocs.io/en/v1.2.0
PyEPR 1.1.5 https://pyepr.readthedocs.io/en/v1.1.5
=====================================
docs/spelling_wordlist.txt
=====================================
@@ -1,6 +1,7 @@
api
config
constness
+cython
Cythonizing
de
dev
=====================================
pyproject.toml
=====================================
@@ -1,8 +1,8 @@
[build-system]
requires = [
- "setuptools >=77.0.0",
+ "setuptools >=77.0.3",
"packaging",
- "cython >=3.0",
+ "cython >=3.1",
"numpy >=2",
]
build-backend = "setuptools.build_meta"
@@ -14,7 +14,7 @@ authors = [
{name = "Antonio Valentino", email = "antonio.valentino at tiscali.it"},
]
description = "Python ENVISAT Product Reader API"
-requires-python = ">=3.10, <4"
+requires-python = ">=3.11, <4"
keywords = ["satellite", "reader", "envisat"]
license = "GPL-3.0-or-later"
license-files = ["LICENSE.txt", "LICENSES/*"]
@@ -37,7 +37,7 @@ classifiers = [
"Topic :: Scientific/Engineering :: GIS",
]
dependencies = [
- "numpy >=1.26.4",
+ "numpy >=2",
]
dynamic = ["version"]
@@ -78,16 +78,23 @@ docs = [
"packaging",
"ipython",
]
-test = ["pytest", "packaging"]
-coverage = ["pytest-cov", "coverage[toml]", {include-group = "test"}]
+test = ["pytest", "packaging", "pooch"]
+coverage = [
+ "pytest-cov",
+ "coverage[toml]",
+ "cython",
+ "numpy >=2",
+ {include-group = "test"},
+]
lint = ["flake8", "pydocstyle", "isort", "black", "ruff", "mypy", "codespell"]
dev = [
"python-build",
"twine",
- "setuptools >=77",
+ "setuptools >=77.0.3",
"packaging",
- "cython >=3",
+ "cython >=3.1",
"numpy >=2",
+ "tox",
{include-group = "docs"},
{include-group = "test"},
{include-group = "coverage"},
@@ -109,29 +116,22 @@ epr = ["py.typed", "*.pyi"]
[tool.cibuildwheel]
-skip = "pp*"
-enable = ["cpython-freethreading"]
-test-requires = "pytest"
+build = ["cp311-*", "cp31?t-*"]
+test-groups = ["test"]
test-command = "pytest -v {project}/tests"
[tool.pytest.ini_options]
addopts = [
- # "--ignore=examples/",
"--import-mode=importlib",
]
-# markers = [
- # "webtest: mark a test as a webtest.",
- # builtin markers
- # "slow: mark test as slow to run.",
- # "remote_data: Apply to tests that require data from remote servers.",
- # "hugemem: mark test as using a lot of memory.",
-# ]
+
[tool.coverage.run]
branch = true
+core = "ctrace"
plugins = ["Cython.Coverage"]
-source = ["epr"]
+source_pkgs = ["epr"]
[tool.black]
@@ -139,12 +139,10 @@ line-length = 79
preview = true
enable-unstable-feature = [
"hug_parens_with_braces_and_square_brackets",
- "multiline_string_handling",
"string_processing",
"wrap_long_dict_values_in_parens",
]
-# target-version = ['py310']
-# extend-exclude = "packagename/parse/*"
+target-version = ['py311']
[tool.isort]
@@ -162,17 +160,15 @@ known_first_party = ["epr"]
[tool.pydocstyle]
-# convention = "numpy"
add-ignore = ["D105"]
# add-ignore = ["D105", "D107"]
match='(?!(test_|conf)).*\.py'
[tool.codespell]
-skip = "*.pdf,*.ipynb,./docs/spelling_wordlist.txt,*.N1,extern,./src/epr/*.c,./docs/_build"
+skip = "*.pdf,*.ipynb,./docs/spelling_wordlist.txt,*.N1,extern,./src/epr/*.c,./docs/_build,./htmlcov"
count = true
quiet-level = 3
-# ignore-words-list = ""
ignore-words="docs/spelling_wordlist.txt"
@@ -184,15 +180,15 @@ exclude = [
[tool.ruff]
line-length = 79
-# indent-width = 4
-# target-version = "py310"
+target-version = "py311"
extend-exclude = ["docs/conf.py"]
[tool.ruff.lint]
preview = true
select = [
- # ruff --version # ruff 0.11.6
+ # ruff --version # ruff 0.16.3
+ # ruff linter
"E", # E/W pycodestyle
"W", # E/W pycodestyle
"F", # F Pyflakes
@@ -261,12 +257,7 @@ extend-ignore = [
# "D107", # D107 Missing docstring in `__init__`
"D203", # D203 1 blank line required before class docstring
"D213", # D213 Multi-line docstring summary should start at the second line
- # "ISC001", # ISC001 Implicitly concatenated string literals on one line
- # "PLR2004", # PLR2004 Magic value used in comparison, consider replacing 2 with a constant variable
- # "PLR0913", # PLR0913 Too many arguments in function definition
- # "PLW1514", # PLW1514 `open` in text mode without explicit `encoding` argument
- # "RET504", # RET504 Unnecessary assignment before `return` statement
- # "RET505", # RET505 Unnecessary `elif` after `return` statement
+ "RUF105" # RUF105 noqa-comments
]
@@ -294,7 +285,3 @@ known-first-party = ["epr"]
[tool.ruff.lint.flake8-import-conventions.extend-aliases]
"xml.etree.ElementTree" = "etree"
-
-
-# [tool.ruff.lint.pydocstyle]
-# convention = "numpy" # Accepts: "google", "numpy", or "pep257".
=====================================
requirements-dev.txt deleted
=====================================
@@ -1,12 +0,0 @@
-coverage
-cython>=3.0
-ipython
-numpy>=1.26.4
-packaging
-pytest
-pytest-cov
-python-build
-sphinx
-sphinx_rtd_theme
-sphinxcontrib-spelling
-twine
=====================================
setup.py
=====================================
@@ -18,10 +18,13 @@
# along with PyEPR. If not, see <http://www.gnu.org/licenses/>.
import os
+import re
import sys
+import glob
+import warnings
+import sysconfig
import setuptools
-from packaging.version import Version
try:
import Cython
@@ -47,9 +50,25 @@ class NumpyExtension(setuptools.Extension):
self._include_dirs = include_dirs
-def setup_extension(eprsrcdir=None, *, coverage: bool = False):
- import glob
-
+def tag_to_packed_version(tag: str) -> tuple[int, bool]:
+ mobj = re.match(
+ r"cp(?P<major>\d{1})(?P<minor>\d{2})(?P<free_threading>t)?", tag
+ )
+ if mobj is None:
+ raise ValueError(f"invalid version tag: {tag!r}")
+ major = int(mobj.group("major"))
+ minor = int(mobj.group("minor"))
+ packed_version = (major << 24) + (minor << 16)
+ free_threading = bool(mobj.group("free_threading") is not None)
+ return packed_version, free_threading
+
+
+def setup_extension(
+ eprsrcdir=None,
+ *,
+ coverage: bool = False,
+ py_limited_api: str | None = None,
+):
if eprsrcdir:
print(f'EPR_API: using EPR C API sources at "{eprsrcdir}"')
extra_sources = glob.glob(f"{eprsrcdir}/epr_*.c")
@@ -61,9 +80,32 @@ def setup_extension(eprsrcdir=None, *, coverage: bool = False):
include_dirs = []
libraries = ["epr_api"]
- define_macros = [("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")]
+ define_macros: list[tuple[str, str | None]] = [
+ ("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")
+ ]
if coverage:
- define_macros.extend([("CYTHON_TRACE_NOGIL", "1")])
+ define_macros.extend([
+ ("CYTHON_TRACE_NOGIL", "1"),
+ ("CYTHON_USE_SYS_MONITORING", "0"),
+ ])
+ if py_limited_api is not None:
+ warnings.warn(
+ "The use of 'limited_api` is not compatible with the "
+ "'coverage': 'limited_api' will be ignored",
+ stacklevel=2,
+ )
+ elif py_limited_api is not None:
+ packed_version, free_threading = tag_to_packed_version(py_limited_api)
+ macro_name = "Py_LIMITED_APIT" if free_threading else "Py_LIMITED_API"
+ hex_version = f"0x{packed_version:08X}"
+ print(f"{macro_name}: {hex_version} ({py_limited_api})")
+ if free_threading and not sysconfig.get_config_var("Py_GIL_DISABLED"):
+ warnings.warn(
+ "Trying to use a free-threading stable API with a Python "
+ "interpreter that has GIL enabled",
+ stacklevel=1,
+ )
+ define_macros.append((macro_name, hex_version))
ext = NumpyExtension(
"epr._epr",
@@ -72,6 +114,7 @@ def setup_extension(eprsrcdir=None, *, coverage: bool = False):
libraries=libraries,
language="c",
define_macros=define_macros,
+ py_limited_api=bool(py_limited_api is not None),
)
# compiler directives
@@ -82,49 +125,84 @@ def setup_extension(eprsrcdir=None, *, coverage: bool = False):
if coverage:
ext.cython_directives["linetrace"] = True
- try:
- import Cython
- except ImportError:
- pass
- else:
- if Version(Cython.__version__) >= Version("3.1.0b1"):
- ext.cython_directives["freethreading_compatible"] = True
+ ext.cython_directives["freethreading_compatible"] = True
return ext
-def make_config(eprsrcdir=None, *, coverage=False):
- return {
- "ext_modules": [setup_extension(eprsrcdir, coverage=coverage)],
+def make_config(
+ eprsrcdir=None,
+ *,
+ coverage=False,
+ py_limited_api: str | None = None,
+):
+ if not py_limited_api:
+ py_limited_api = None
+ elif py_limited_api == "AUTO":
+ if not sysconfig.get_config_var("Py_GIL_DISABLED"):
+ py_limited_api = "cp311"
+ else:
+ py_limited_api = None
+
+ config = {
+ "ext_modules": [
+ setup_extension(
+ eprsrcdir, coverage=coverage, py_limited_api=py_limited_api
+ ),
+ ]
}
+ if py_limited_api is not None:
+ config["options"] = {"bdist_wheel": {"py_limited_api": py_limited_api}}
+
+ return config
+
def get_parser():
import argparse
- PYEPR_COVERAGE_STR = os.environ.get("PYEPR_COVERAGE", "").upper()
- DEFAULT_COVERAGE = bool(
- PYEPR_COVERAGE_STR in {"Y", "YES", "TRUE", "OK", "ON", "1"}
- )
DEFAULT_EPRAPI_SRC = "extern/epr-api/src"
if not os.path.exists(DEFAULT_EPRAPI_SRC):
DEFAULT_EPRAPI_SRC = ""
DEFAULT_EPRAPI_SRC = os.environ.get("PYEPR_EPRAPI_SRC", DEFAULT_EPRAPI_SRC)
+ DEFAULT_PY_LIMITED_API = os.environ.get("PY_LIMITED_API", None)
+
+ PYEPR_COVERAGE_STR = os.environ.get("PYEPR_COVERAGE", "").upper()
+ DEFAULT_COVERAGE = bool(
+ PYEPR_COVERAGE_STR in {"Y", "YES", "TRUE", "OK", "ON", "1"}
+ )
+
parser = argparse.ArgumentParser(add_help=False)
+ parser.add_argument(
+ "--epr-api-src",
+ default=DEFAULT_EPRAPI_SRC,
+ help=(
+ "set the path to the EPR-API source tree. "
+ "If not set uses the system libraries for epr-api. "
+ "Default: %(default)s"
+ ),
+ )
+ parser.add_argument(
+ "--use-stable-api",
+ dest="py_limited_api",
+ default=DEFAULT_PY_LIMITED_API,
+ help=(
+ "enable the use of the specified stable Python API "
+ "(and limited ABI)."
+ "If 'None', the use of limited API is disabled. "
+ "E.g.: 'cp312' for Python 3.12. "
+ f"Default: {DEFAULT_PY_LIMITED_API}."
+ ),
+ )
parser.add_argument(
"--coverage",
action="store_true",
default=DEFAULT_COVERAGE,
- help="build the epr module to allow cython coverage measurement "
- "(default: %(default)s)",
- )
- parser.add_argument(
- "--epr-api-src",
- default=DEFAULT_EPRAPI_SRC,
- help="set the path to the EPR-API source tree. "
- "If not set uses the system libraries for epr-api. "
- "Default: %(default)s",
+ help=(
+ "build the epr module to allow cython coverage measurement "
+ "(default: %(default)s)"
+ ),
)
return parser
@@ -134,9 +212,14 @@ if __name__ == "__main__":
parser = get_parser()
extra_args, setup_argv = parser.parse_known_args(sys.argv)
sys.argv[:] = setup_argv
+ print("PY_LIMITED_API:", extra_args.py_limited_api)
print("PYEPR_COVERAGE:", extra_args.coverage)
- config = make_config(extra_args.epr_api_src, coverage=extra_args.coverage)
+ config = make_config(
+ extra_args.epr_api_src,
+ coverage=extra_args.coverage,
+ py_limited_api=extra_args.py_limited_api,
+ )
if "-h" in setup_argv or "--help" in setup_argv:
msg = parser.format_help()
=====================================
src/epr/__init__.py
=====================================
@@ -81,4 +81,4 @@ from ._epr import ( # noqa: F401
get_scaling_method_name,
)
-__version__ = "1.3.0"
+__version__ = "1.3.1"
=====================================
tests/data/registry.txt
=====================================
@@ -0,0 +1 @@
+ASA_APM_1PNDSI20091007_025628_000000432083_00118_39751_0000.N1 425132d361595a53a2adff849e3e02429df1be9d4883015f104ce2387f4eb332
=====================================
tests/test_all.py
=====================================
@@ -22,15 +22,12 @@ import shutil
import typing
import numbers
import pathlib
-import zipfile
import operator
import platform
import tempfile
import unittest
import functools
-from urllib.request import urlopen
-
-from packaging.version import parse as Version # noqa: N812
+import sysconfig
try:
import resource
@@ -41,17 +38,22 @@ else:
import numpy as np
-import numpy.testing as npt
+import pooch
+from numpy import testing as npt
+from packaging.version import parse as Version # noqa: N812
import epr
-from epr._epr import (
- _EPR_MAGIC_FIELD, # noqa: PLC2701
- _EPR_MAGIC_RASTER, # noqa: PLC2701
- _EPR_MAGIC_RECORD, # noqa: PLC2701
- _EPR_MAGIC_BAND_ID, # noqa: PLC2701
- _EPR_MAGIC_PRODUCT_ID, # noqa: PLC2701
+from epr._epr import ( # noqa: PLC2701
+ _EPR_MAGIC_FIELD,
+ _EPR_MAGIC_RASTER,
+ _EPR_MAGIC_RECORD,
+ _EPR_MAGIC_BAND_ID,
+ _EPR_MAGIC_PRODUCT_ID,
)
+FREE_THREAD = sysconfig.get_config_var("Py_GIL_DISABLED")
+
+
EPR_TO_NUMPY_TYPE = {
# epr.E_TID_UNKNOWN: np.NPY_NOTYPE,
epr.E_TID_UCHAR: np.ubyte,
@@ -84,9 +86,24 @@ EPR_C_BUG_BCEPR002 = EPR_C_BUG_PYEPR009
TESTDIR = pathlib.Path(__file__).parent
-TEST_PRODUCT = "ASA_APM_1PNPDE20091007_025628_000000432083_00118_39751_9244.N1"
+TESTDATADIR = TESTDIR / "data"
+TEST_PRODUCT = "ASA_APM_1PNDSI20091007_025628_000000432083_00118_39751_0000.N1"
TEST_PRODUCT_BM_EXPR = None
-PRODUCT_FILE = TESTDIR / TEST_PRODUCT
+PRODUCT_FILE = TESTDATADIR / TEST_PRODUCT
+
+
+def _create_pooch() -> pooch.Pooch:
+ pooch_obj = pooch.create(
+ path=TESTDATADIR,
+ base_url="https://github.com/avalentino/pyepr-test-data/raw/v1.0.0/",
+ )
+
+ registry_file = TESTDATADIR / "registry.txt"
+ pooch_obj.load_registry(registry_file)
+ return pooch_obj
+
+
+DATA_MANAGER = _create_pooch()
def quiet(func):
@@ -96,7 +113,7 @@ def quiet(func):
syserr = sys.stderr
try:
# using '/dev/null' doesn't work in python 3 because the file
- # object coannot be converted into a C FILE*
+ # object cannot be converted into a C FILE*
# with file(os.devnull) as fd:
with tempfile.TemporaryFile("w+", encoding="utf-8") as fd:
sys.stdout = fd
@@ -132,21 +149,10 @@ def equal_products(product1, product2):
def setUpModule():
- filename = PRODUCT_FILE
- baseurl = "http://www.brockmann-consult.de/beam/data/products/ASAR"
- url = baseurl + "/" + pathlib.Path(TEST_PRODUCT).with_suffix(".zip").name
- zipfilename = filename.with_name(filename.name + ".zip")
- if not filename.exists():
- with urlopen(url) as src, zipfilename.open("wb") as dst:
- for data in src:
- dst.write(data)
-
- with zipfile.ZipFile(zipfilename) as arch:
- arch.extractall(TESTDIR)
-
- zipfilename.unlink()
-
+ filename_str = DATA_MANAGER.fetch(TEST_PRODUCT)
+ filename = pathlib.Path(filename_str)
assert filename.exists()
+ assert filename == PRODUCT_FILE
class TestOpenProduct(unittest.TestCase):
@@ -211,8 +217,8 @@ class TestOpenProduct(unittest.TestCase):
class TestProduct(unittest.TestCase): # noqa: PLR0904
OPEN_MODE = "rb"
- ID_STRING = "ASA_APM_1PNPDE20091007_025628_000000432083_00118"
- TOT_SIZE = 22903686
+ ID_STRING = TEST_PRODUCT[:48]
+ TOT_SIZE = 22911746
DATASET_NAMES = [
"MDS1_SQ_ADS",
@@ -836,16 +842,16 @@ class TestBand(unittest.TestCase): # noqa: PLR0904
DATA_TYPE = np.float32
# fmt: off
TEST_DATA: np.typing.NDArray = np.asarray([
- [228., 213., 235., 256., 239., 260., 210., 197., 233., 213.],
- [246., 248., 333., 317., 272., 247., 247., 221., 221., 205.],
- [239., 297., 412., 381., 301., 226., 262., 256., 229., 214.],
- [212., 279., 328., 318., 279., 231., 253., 274., 240., 242.],
- [199., 236., 245., 262., 282., 265., 261., 255., 255., 239.],
- [214., 218., 284., 300., 269., 266., 272., 224., 292., 238.],
- [240., 241., 300., 308., 248., 254., 269., 230., 276., 256.],
- [256., 261., 265., 269., 263., 262., 279., 279., 300., 367.],
- [273., 262., 262., 239., 270., 284., 344., 380., 416., 447.],
- [292., 286., 303., 261., 284., 374., 445., 431., 422., 416.],
+ [255., 333., 313., 295., 264., 306., 299., 330., 399., 335.],
+ [254., 233., 320., 325., 281., 247., 249., 228., 217., 210.],
+ [243., 266., 399., 397., 320., 237., 251., 261., 236., 210.],
+ [216., 254., 323., 324., 286., 240., 242., 271., 253., 230.],
+ [199., 226., 241., 259., 276., 272., 261., 252., 259., 235.],
+ [221., 212., 264., 305., 271., 264., 275., 224., 284., 251.],
+ [243., 235., 285., 312., 260., 242., 270., 233., 267., 259.],
+ [248., 259., 266., 261., 269., 254., 274., 278., 287., 347.],
+ [270., 262., 263., 238., 260., 280., 323., 374., 406., 437.],
+ [303., 278., 303., 270., 264., 352., 434., 435., 423., 412.],
])
# fmt: on
@@ -1309,26 +1315,26 @@ class TestAnnotationBand(TestBand):
RTOL = 1e-7
# fmt: off
TEST_DATA: np.typing.NDArray = np.asarray([
- [21.86950111, 21.86438370, 21.85926437, 21.85414696, 21.84902954,
- 21.84391022, 21.83879280, 21.83367538, 21.82855606, 21.82343864],
- [21.86950302, 21.86438560, 21.85926628, 21.85414886, 21.84903145,
- 21.84391212, 21.83879471, 21.83367729, 21.82855797, 21.82344055],
- [21.86950302, 21.86438560, 21.85926628, 21.85414886, 21.84903145,
- 21.84391212, 21.83879471, 21.83367729, 21.82855797, 21.82344055],
- [21.86950302, 21.86438560, 21.85926628, 21.85414886, 21.84903145,
- 21.84391212, 21.83879471, 21.83367729, 21.82855797, 21.82344055],
- [21.86950493, 21.86438751, 21.85926819, 21.85415077, 21.84903335,
- 21.84391403, 21.83879662, 21.83367920, 21.82855987, 21.82344246],
- [21.86950493, 21.86438751, 21.85926819, 21.85415077, 21.84903335,
- 21.84391403, 21.83879661, 21.83367920, 21.82855987, 21.82344246],
- [21.86950493, 21.86438751, 21.85926819, 21.85415077, 21.84903335,
- 21.84391403, 21.83879661, 21.83367912, 21.82855987, 21.82344246],
- [21.86950683, 21.86438942, 21.85927009, 21.85415268, 21.84903526,
- 21.84391594, 21.83879852, 21.83368111, 21.82856178, 21.82344437],
- [21.86950683, 21.86438942, 21.85927009, 21.85415268, 21.84903526,
- 21.84391594, 21.83879852, 21.83368111, 21.82856178, 21.82344437],
- [21.86950683, 21.86438942, 21.85927009, 21.85415268, 21.84903526,
- 21.84391594, 21.83879852, 21.83368111, 21.82856178, 21.82344437],
+ [21.869589, 21.864470, 21.859352, 21.854235, 21.849115,
+ 21.843998, 21.838880, 21.833761, 21.828644, 21.823524],
+ [21.869589, 21.864470, 21.859352, 21.854235, 21.849115,
+ 21.843998, 21.838880, 21.833761, 21.828644, 21.823524],
+ [21.869590, 21.864471, 21.859354, 21.854237, 21.849117,
+ 21.844000, 21.838882, 21.833763, 21.828646, 21.823526],
+ [21.869590, 21.864471, 21.859354, 21.854237, 21.849117,
+ 21.844000, 21.838882, 21.833763, 21.828646, 21.823526],
+ [21.869590, 21.864471, 21.859354, 21.854237, 21.849117,
+ 21.844000, 21.838882, 21.833763, 21.828646, 21.823526],
+ [21.869593, 21.864473, 21.859356, 21.854239, 21.849120,
+ 21.844002, 21.838884, 21.833765, 21.828648, 21.823528],
+ [21.869593, 21.864473, 21.859356, 21.854239, 21.849120,
+ 21.844002, 21.838884, 21.833765, 21.828648, 21.823528],
+ [21.869595, 21.864475, 21.859358, 21.854240, 21.849121,
+ 21.844004, 21.838886, 21.833767, 21.828650, 21.823530],
+ [21.869595, 21.864475, 21.859358, 21.854240, 21.849121,
+ 21.844004, 21.838886, 21.833767, 21.828650, 21.823530],
+ [21.869595, 21.864475, 21.859358, 21.854240, 21.849121,
+ 21.844004, 21.838886, 21.833767, 21.828650, 21.823530],
])
# fmt: on
@@ -2212,58 +2218,15 @@ class TestFieldWrite(unittest.TestCase):
FIELD_UNIT = ""
FIELD_INDEX = 3
FIELD_NUM_ELEMS = 1452
+ # fmt: off
FIELD_VALUES = (
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 2417,
- 2282,
- 2280,
- 2393,
- 2440,
- 2697,
- 3119,
- 3577,
- 3853,
- 3688,
- 3784,
- 4201,
- 3846,
- 2821,
- 2186,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 2264, 2123, 2187, 2255, 2332,
+ 2646, 3065, 3496, 3622, 3436, 3694, 3921, 3298, 2368, 1974,
)
+ # fmt: on
def setUp(self):
self.filename = PRODUCT_FILE.with_name(PRODUCT_FILE.name + "_")
@@ -2607,7 +2570,7 @@ class TestTimeField(TestField):
FIELD_TYPE_NAME = "time"
FIELD_NUM_ELEMS = 1
FIELD_VALUES = (
- epr.EPRTime(days=3567, seconds=10588, microseconds=239091),
+ epr.EPRTime(days=3567, seconds=10588, microseconds=239048),
)
FIELD_UNIT = "MJD"
FIELD_OFFSET = 0
@@ -3112,12 +3075,14 @@ class TestLibVersion(unittest.TestCase):
self.assertTrue(isinstance(epr.EPR_C_API_VERSION, str))
-# only PyPy 3 seems to be affected
@unittest.skipIf(
platform.python_implementation() == "PyPy",
"skip memory leak check on PyPy",
)
- at unittest.skipIf(not have_resource, '"resource" module not available')
+ at unittest.skipIf(
+ FREE_THREAD, "skip memory leak check on free threading builds"
+)
+ at unittest.skipIf(not have_resource, "'resource' module not available")
class TestMemoryLeaks(unittest.TestCase):
# See gh-10 (https://github.com/avalentino/pyepr/issues/10)
View it on GitLab: https://salsa.debian.org/debian-gis-team/pyepr/-/compare/e38ca2ac0472a9f934c5c47da072f08dca7242b2...73730393f5d1df12cfd66a7680c827c2438f1160
--
View it on GitLab: https://salsa.debian.org/debian-gis-team/pyepr/-/compare/e38ca2ac0472a9f934c5c47da072f08dca7242b2...73730393f5d1df12cfd66a7680c827c2438f1160
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