[pkg-java] r15221 - in tags/jalview: . 2.7.dfsg-1/debian 2.7.dfsg-1/debian/patches 2.7.dfsg-1/debian/wrappers
Vincent Fourmond
fourmond at alioth.debian.org
Wed Oct 19 19:54:40 UTC 2011
Author: fourmond
Date: 2011-10-19 19:54:39 +0000 (Wed, 19 Oct 2011)
New Revision: 15221
Added:
tags/jalview/2.7.dfsg-1/
tags/jalview/2.7.dfsg-1/debian/changelog
tags/jalview/2.7.dfsg-1/debian/control
tags/jalview/2.7.dfsg-1/debian/copyright
tags/jalview/2.7.dfsg-1/debian/jalview.install
tags/jalview/2.7.dfsg-1/debian/jalview.jlibs
tags/jalview/2.7.dfsg-1/debian/jalview.manpages
tags/jalview/2.7.dfsg-1/debian/jalview.menu
tags/jalview/2.7.dfsg-1/debian/manpages/
tags/jalview/2.7.dfsg-1/debian/new-upstream
tags/jalview/2.7.dfsg-1/debian/patches/mutilate-build-system.diff
tags/jalview/2.7.dfsg-1/debian/patches/series
tags/jalview/2.7.dfsg-1/debian/rules
tags/jalview/2.7.dfsg-1/debian/wrappers/jalview
Removed:
tags/jalview/2.7.dfsg-1/debian/README.Debian
tags/jalview/2.7.dfsg-1/debian/changelog
tags/jalview/2.7.dfsg-1/debian/control
tags/jalview/2.7.dfsg-1/debian/copyright
tags/jalview/2.7.dfsg-1/debian/javabuild
tags/jalview/2.7.dfsg-1/debian/menu.ex
tags/jalview/2.7.dfsg-1/debian/new-upstream
tags/jalview/2.7.dfsg-1/debian/rules
tags/jalview/2.7.dfsg-1/debian/wrappers/jalview
Log:
[svn-buildpackage] Tagging jalview 2.7.dfsg-1
Deleted: tags/jalview/2.7.dfsg-1/debian/README.Debian
===================================================================
--- trunk/jalview/debian/README.Debian 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/README.Debian 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,6 +0,0 @@
-jalview for Debian
-------------------
-
-<possible notes regarding this package - if none, delete this file>
-
- -- Vincent Fourmond <fourmond at debian.org> Thu, 15 Jan 2009 23:12:16 +0100
Deleted: tags/jalview/2.7.dfsg-1/debian/changelog
===================================================================
--- trunk/jalview/debian/changelog 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/changelog 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,9 +0,0 @@
-jalview (2.6.1.dfsg-1) unstable; urgency=low
-
- * Initial release (Closes: #507436)
- * Adding a debian/new-upstream script to repackage the original
- tarball, getting rid of the bundled JAR file (I love JAR files)
- * Using dh 7 and javahelper
- * Using jh_build for building
-
- -- Vincent Fourmond <fourmond at debian.org> Fri, 15 Apr 2011 00:28:48 +0200
Copied: tags/jalview/2.7.dfsg-1/debian/changelog (from rev 15220, trunk/jalview/debian/changelog)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/changelog (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/changelog 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,11 @@
+jalview (2.7.dfsg-1) experimental; urgency=low
+
+ * Initial release (Closes: #507436)
+ * Adding a debian/new-upstream script to repackage the original tarball,
+ getting rid of the bundled precompiled JAR files (I love JAR files)
+ * Using dh 7 and javahelper
+ * Using jh_build for building
+ * Uploading to experimental as it works only with the version of jmol in
+ experimental
+
+ -- Vincent Fourmond <fourmond at debian.org> Wed, 19 Oct 2011 20:19:46 +0200
Deleted: tags/jalview/2.7.dfsg-1/debian/control
===================================================================
--- trunk/jalview/debian/control 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/control 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,31 +0,0 @@
-Source: jalview
-Section: science
-Priority: optional
-Maintainer: Vincent Fourmond <fourmond at debian.org>
-Build-Depends: cdbs, debhelper (>= 7), default-jdk,
- ant, ant-optional, libxerces2-java, libxalan2-java,
- libaxis-java, libwsdl4j-java, libgnujaf-java,
- libgnumail-java, liblog4j1.2-java, javahelp2,
- libcommons-discovery-java, libcommons-logging-java,
- libstevesoft-regex-java, libjmol-java,
- libcastor-xml-java, libvamsas-client-java,
- libjaba-client-java, libaxis-java, jmol-applet,
- javahelper, javahelp2
-Standards-Version: 3.9.2
-Homepage: http://www.jalview.org/
-Vcs-Svn: svn://svn.debian.org/svn/pkg-java/trunk/jalview
-Vcs-Browser: http://svn.debian.org/viewsvn/pkg-java/trunk/jalview
-
-
-Package: jalview
-Architecture: all
-Depends: ${misc:Depends}, openjdk-6-jre | cacao-oj6-jre | java6-runtime,
- java-wrappers (>= 0.1.22), ${java:Depends}
-Suggests: kalign, t-coffee, clustalw
-Description: multiple alignment editor
- JalView is a Java alignement editor that can work with sequence
- alignement produced by programs implementing alignment algorithms
- such as clustalw, kalign and t-coffee.
- .
- It has lots of features, and can be considered a decent BioEdit
- replacement for Debian systems.
Copied: tags/jalview/2.7.dfsg-1/debian/control (from rev 15220, trunk/jalview/debian/control)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/control (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/control 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,34 @@
+Source: jalview
+Section: science
+Priority: optional
+Maintainer: Vincent Fourmond <fourmond at debian.org>
+Build-Depends: cdbs, debhelper (>= 7), default-jdk,
+ ant, ant-optional, libxerces2-java, libxalan2-java,
+ libaxis-java, libwsdl4j-java, libgnujaf-java,
+ libgnumail-java, liblog4j1.2-java, javahelp2,
+ libcommons-discovery-java, libcommons-logging-java,
+ libjmol-java (>= 12.1.42),
+ jmol-applet (>= 12.1.42),
+ libcastor-xml-java, libjaba-client-java, libaxis-java,
+ javahelper, javahelp2, libjswingreader-java,
+ libmiglayout-java, icedtea-netx-common,
+ libhttpmime-java, libhttpcore-java,
+ libapache-mime4j-java, libhttpclient-java,
+ libvamsas-client-java
+Standards-Version: 3.9.2
+Homepage: http://www.jalview.org/
+Vcs-Svn: svn://svn.debian.org/svn/pkg-java/trunk/jalview
+Vcs-Browser: http://svn.debian.org/viewsvn/pkg-java/trunk/jalview
+
+Package: jalview
+Architecture: all
+Depends: ${misc:Depends}, openjdk-6-jre | cacao-oj6-jre | java6-runtime,
+ java-wrappers (>= 0.1.22), libjmol-java (>= 12.1.42), ${java:Depends}
+Suggests: kalign, t-coffee, clustalw
+Description: multiple alignment editor
+ JalView is a Java alignement editor that can work with sequence
+ alignement produced by programs implementing alignment algorithms
+ such as clustalw, kalign and t-coffee.
+ .
+ It has lots of features, is actively developed, and will compare
+ advantageously to BioEdit, while being free as in free speech !
Deleted: tags/jalview/2.7.dfsg-1/debian/copyright
===================================================================
--- trunk/jalview/debian/copyright 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/copyright 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,52 +0,0 @@
-This package was debianized by:
-
- Vincent Fourmond <fourmond at debian.org> on Thu, 15 Jan 2009 23:12:16 +0100
-
-It was downloaded from:
-
- <url://example.com>
-
-Upstream Author(s):
-
- <put author's name and email here>
- <likewise for another author>
-
-Copyright:
-
- <Copyright (C) YYYY Firtname Lastname>
- <likewise for another author>
-
-License:
-
-### SELECT: ###
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
-### OR ###
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License version 2 as
- published by the Free Software Foundation.
-##########
-
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-On Debian systems, the complete text of the GNU General
-Public License can be found in `/usr/share/common-licenses/GPL'.
-
-The Debian packaging is:
-
- Copyright C) 2009, Vincent Fourmond <fourmond at debian.org>
-
-and is licensed under the GPL, see above.
-
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
Copied: tags/jalview/2.7.dfsg-1/debian/copyright (from rev 15220, trunk/jalview/debian/copyright)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/copyright (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/copyright 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,78 @@
+Format: http://anonscm.debian.org/viewvc/dep/web/deps/dep5.mdwn?revision=174
+Upstream-Name: jalview
+Upstream-Contact: jalview-discuss at jalview.org
+Source:
+ The original tarball was made downloading the jalview-*.tar.gz
+ tarball on http://www.jalview.org/versions.html, and stripping all
+ binary jars.
+ .
+ For more details, see the debian/new-upstream script that takes care of
+ the repackaging.
+
+Files: *
+Copyright: Copyright 2007-2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+License: GPL-3+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
+
+Files: src/org/biojava/dasobert/*
+Copyright: 2004-2007 Andreas Prlic
+License: LGPL-2.1
+ This code may be freely distributed and modified under the
+ terms of the GNU Lesser General Public Licence. This should
+ be distributed with the code.
+ .
+ On Debian systems, the complete text of the GNU Lesser Public
+ License can be found in `/usr/share/common-licenses/LGPL-2.1'.
+
+Files: src/org/jibble/*
+Copyright: 2001-2004 Paul James Mutton
+License: GPL-2
+ This software is dual-licensed, allowing you to choose between the
+ GNU General Public License (GPL) and the www.jibble.org Commercial
+ License. Since the GPL may be too restrictive for use in a
+ proprietary application, a commercial license is also provided. Full
+ license information can be found at http://www.jibble.org/licenses/.
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License (version 2) can be found in `/usr/share/common-licenses/GPL-2'.
+
+Files: debian/*
+Copyright: Copyright (C) 2009-2011 Vincent Fourmond <fourmond at debian.org>
+License: GPL-3+
+ (see above)
+
+Files: src/com/stevesoft/pat/*
+Copyright: Copyright 2001, Steven R. Brandt
+License: LGPL3+
+ This package is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public License
+ as published by the Free Software Foundation; either version 3 of
+ the License, or (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
+ 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU Lesser Public
+ License version 3 can be found in `/usr/share/common-licenses/LGPL-3'.
Copied: tags/jalview/2.7.dfsg-1/debian/jalview.install (from rev 15209, trunk/jalview/debian/jalview.install)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/jalview.install (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/jalview.install 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1 @@
+debian/wrappers/jalview usr/bin
\ No newline at end of file
Copied: tags/jalview/2.7.dfsg-1/debian/jalview.jlibs (from rev 15137, trunk/jalview/debian/jalview.jlibs)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/jalview.jlibs (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/jalview.jlibs 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1 @@
+dist/jalview.jar
Copied: tags/jalview/2.7.dfsg-1/debian/jalview.manpages (from rev 15138, trunk/jalview/debian/jalview.manpages)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/jalview.manpages (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/jalview.manpages 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1 @@
+debian/manpages/jalview.1
\ No newline at end of file
Copied: tags/jalview/2.7.dfsg-1/debian/jalview.menu (from rev 15138, trunk/jalview/debian/jalview.menu)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/jalview.menu (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/jalview.menu 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,2 @@
+?package(jalview):needs="X11" section="Applications/Science/Biology"\
+ title="Jalview" command="/usr/bin/jalview"
Deleted: tags/jalview/2.7.dfsg-1/debian/javabuild
===================================================================
--- trunk/jalview/debian/javabuild 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/javabuild 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1 +0,0 @@
-jalview.jar src
Deleted: tags/jalview/2.7.dfsg-1/debian/menu.ex
===================================================================
--- trunk/jalview/debian/menu.ex 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/menu.ex 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,2 +0,0 @@
-?package(jalview):needs="X11|text|vc|wm" section="Applications/see-menu-manual"\
- title="jalview" command="/usr/bin/jalview"
Deleted: tags/jalview/2.7.dfsg-1/debian/new-upstream
===================================================================
--- trunk/jalview/debian/new-upstream 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/new-upstream 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,40 +0,0 @@
-#!/bin/sh
-#
-# new-upstream: copyright 2008, 2009 by Vincent Fourmond.
-# See debian/copyright file for details.
-#
-# Called by uscan; from uscan(1):
-#
-# Finally, if a third parameter (an action) is given in the watchfile
-# line, this is taken as the name of a command, and the command
-# command --upstream-version version filename
-#
-# is executed, using either the original file or the symlink name.
-#
-# Thanks to Sam Morris <sam at robots.org.uk> for giving me the idea
-#
-
-version=$2
-filename=$3
-
-dir=`mktemp -d`
-
-# We repackage the upstream source zip file:
-tar xvz -C $dir -f "$filename"
-origname=jalview_$version.dfsg.orig.tar.bz2
-
-# We repackage excluding the lib/ subdir
-cd $dir
-# Removing the utils/ directory, not needed for build ?
-rm -rf jalview*/utils
-
-# Removing all binary jars...
-find -name '*.jar' | xargs rm
-
-echo "Creating archive"
-tar cvj -f $origname jalview*
-cd -
-# We remove any file already existing there: it might be a symlink.
-rm -f $orginame
-mv $dir/$origname ..
-# rm -rf $dir
\ No newline at end of file
Copied: tags/jalview/2.7.dfsg-1/debian/new-upstream (from rev 15220, trunk/jalview/debian/new-upstream)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/new-upstream (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/new-upstream 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,45 @@
+#!/bin/sh
+#
+# new-upstream: copyright 2008, 2009 by Vincent Fourmond.
+# See debian/copyright file for details.
+#
+# Called by uscan; from uscan(1):
+#
+# Finally, if a third parameter (an action) is given in the watchfile
+# line, this is taken as the name of a command, and the command
+# command --upstream-version version filename
+#
+# is executed, using either the original file or the symlink name.
+#
+# Thanks to Sam Morris <sam at robots.org.uk> for giving me the idea
+#
+
+version=$2
+filename=$3
+
+dir=`mktemp -d`
+
+# We repackage the upstream source zip file:
+tar xvz -C $dir -f "$filename"
+origname=jalview_$version.dfsg.orig.tar.bz2
+
+# We repackage excluding the lib/ subdir
+cd $dir
+# Removing the utils/ directory, not needed for build ?
+rm -rf jalview*/utils
+
+# Removing all binary jars...
+find -name '*.jar' | xargs rm
+
+# Removing examples/ subdirectory, whose copyright status is unclear
+# to me for the time being
+rm -rf jalview*/examples
+
+
+echo "Creating archive"
+tar cvj -f $origname jalview*
+cd -
+# We remove any file already existing there: it might be a symlink.
+rm -f $orginame
+mv $dir/$origname ..
+# rm -rf $dir
\ No newline at end of file
Copied: tags/jalview/2.7.dfsg-1/debian/patches/mutilate-build-system.diff (from rev 15206, trunk/jalview/debian/patches/mutilate-build-system.diff)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/patches/mutilate-build-system.diff (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/patches/mutilate-build-system.diff 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,38 @@
+Index: jalview-2.7.dfsg~almost/build.xml
+===================================================================
+--- jalview-2.7.dfsg~almost.orig/build.xml 2011-09-27 16:50:20.000000000 +0200
++++ jalview-2.7.dfsg~almost/build.xml 2011-10-16 00:25:56.823058139 +0200
+@@ -18,13 +18,6 @@
+ -->
+ <project name="jalviewX" default="usage" basedir=".">
+ <!-- we use jalopy to format our sources -->
+- <taskdef name="jalopy" classname="de.hunsicker.jalopy.plugin.ant.AntPlugin">
+- <classpath>
+- <fileset dir="utils/jalopy/lib">
+- <include name="*.jar" />
+- </fileset>
+- </classpath>
+- </taskdef>
+
+ <target name="help" depends="usage" />
+ <target name="usage">
+@@ -114,10 +107,6 @@
+ <property name="wsdl.ClientNS" value="ext.vamsas" />
+ <!-- the class path for building the application -->
+ <path id="build.classpath">
+- <fileset dir="utils">
+- <include name="*.jar" />
+- <include name="**/*.jar" />
+- </fileset>
+ <fileset dir="${libDir}">
+ <include name="*.jar" />
+ <include name="**/*.jar" />
+@@ -407,7 +396,7 @@
+ </axis-wsdl2java>
+ </target>
+
+- <target name="makedist" depends="build, buildPropertiesFile, buildindices">
++ <target name="makedist" depends="build, buildindices">
+ <!-- make the package jar if not already existing -->
+ <mkdir dir="${packageDir}" />
+ <!-- clean dir if it already existed -->
Copied: tags/jalview/2.7.dfsg-1/debian/patches/series (from rev 15137, trunk/jalview/debian/patches/series)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/patches/series (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/patches/series 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1 @@
+mutilate-build-system.diff
Deleted: tags/jalview/2.7.dfsg-1/debian/rules
===================================================================
--- trunk/jalview/debian/rules 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/rules 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,11 +0,0 @@
-#!/usr/bin/make -f
-
-export JAVA_HOME=/usr/lib/jvm/default-java
-export CLASSPATH=/usr/share/java/castor-xml.jar:/usr/share/java/commons-logging.jar:/usr/share/java/log4j-1.2.jar:/usr/share/java/castor-core.jar:/usr/share/java/Jmol.jar:/usr/share/java/vamsas-client.jar:/usr/share/java/min-jaba-client.jar:/usr/share/java/axis-jaxrpc.jar:/usr/share/java/axis.jar:/usr/share/jmol-applet/JmolApplet.jar:/usr/share/java/jh.jar
-
-%:
- dh $@ --with javahelper
-
-override_dh_auto_build:
-
-override_dh_auto_clean:
Copied: tags/jalview/2.7.dfsg-1/debian/rules (from rev 15209, trunk/jalview/debian/rules)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/rules (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/rules 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,31 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+VERSION = $(shell dpkg-parsechangelog | egrep '^Version' | \
+ sed -r 's/Version:\s*//' | sed -r 's/^[0-9]+://' | \
+ sed -r 's/(\.dfsg)?-[0-9.]+//')
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/javahelper.mk
+include /usr/share/cdbs/1/class/ant.mk
+
+JAVA_HOME_DIRS := /usr/lib/jvm/default-java
+ANT_HOME := /usr/share/ant
+DEB_ANT_COMPILER := modern
+DEB_BUILDDIR := .
+DEB_ANT_CLEAN_TARGET := clean
+DEB_ANT_BUILD_TARGET := makedist
+DEB_JARS := castor-xml commons-logging log4j-1.2 \
+ castor-core Jmol min-jaba-client axis-jaxrpc commons-discovery \
+ axis jh vamsas-client /usr/share/jmol-applet/JmolApplet.jar \
+ jswingreader miglayout /usr/share/icedtea-web/plugin.jar \
+ httpmime httpcore apache-mime4j httpclient
+
+
+ANT_OPTS := -Dbuild.sysclasspath=last \
+ -DJALVIEW_VERSION=$(VERSION)
+
+
+JH_CLASSPATH_ARGS := -c"$(shell echo $(DEB_CLASSPATH) | sed 's/:/ /g')" debian/jalview/usr/share/java/jalview.jar
Deleted: tags/jalview/2.7.dfsg-1/debian/wrappers/jalview
===================================================================
--- trunk/jalview/debian/wrappers/jalview 2011-06-06 09:16:58 UTC (rev 13758)
+++ tags/jalview/2.7.dfsg-1/debian/wrappers/jalview 2011-10-19 19:54:39 UTC (rev 15221)
@@ -1,16 +0,0 @@
-#!/bin/sh
-
-# Include the wrappers utility script
-. /usr/lib/java-wrappers/java-wrappers.sh
-
-# We need openjdk or sun6
-find_java_runtime openjdk sun6
-
-find_jars activation axis jalview-castor-1.1-cycle-xml \
- commons-discovery commons-logging jaxrpc \
- jhall Jmol log4j-1.2 \
- gnumail regex saaj jalview-vamsas-client \
- wsdl4j xercesImpl xml-apis \
- jalview
-
-run_java jalview.bin.Jalview "$@"
Copied: tags/jalview/2.7.dfsg-1/debian/wrappers/jalview (from rev 15138, trunk/jalview/debian/wrappers/jalview)
===================================================================
--- tags/jalview/2.7.dfsg-1/debian/wrappers/jalview (rev 0)
+++ tags/jalview/2.7.dfsg-1/debian/wrappers/jalview 2011-10-19 19:54:39 UTC (rev 15221)
@@ -0,0 +1,11 @@
+#!/bin/sh
+
+# Include the wrappers utility script
+. /usr/lib/java-wrappers/java-wrappers.sh
+
+# We need openjdk or sun6
+find_java_runtime openjdk sun6
+
+find_jar_classpath jalview
+
+run_java jalview.bin.Jalview "$@"
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