[jabref] 01/03: Merge branch 'dev' of git://git.debian.org/git/pkg-java/jabref

Tony Mancill tmancill at moszumanska.debian.org
Fri Dec 9 04:20:36 UTC 2016


This is an automated email from the git hooks/post-receive script.

tmancill pushed a commit to branch master
in repository jabref.

commit 6c608a473c4e7e833916c8986c84066e193c4b85
Merge: b8bd799 4ead581
Author: tony mancill <tmancill at debian.org>
Date:   Thu Dec 8 20:00:38 2016 -0800

    Merge branch 'dev' of git://git.debian.org/git/pkg-java/jabref
    
    Add conflicts:
    	debian/changelog
    	debian/patches/series

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 .travis.yml                                        |    70 +
 AUTHORS                                            |   169 +
 CHANGELOG.md                                       |   501 +
 CONTRIBUTING.md                                    |   104 +
 DEVELOPERS                                         |     8 +
 JabRef - MrDlib.userlibraries                      |    25 -
 Jabref.eml                                         |    51 -
 LICENSE.md                                         |    26 +
 README.md                                          |   119 +-
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 src/java/tests/net/sf/jabref/gui/AllTests.java     |    16 -
 .../tests/net/sf/jabref/gui/AutoCompleterTest.java |   184 -
 src/java/tests/net/sf/jabref/imports/AllTests.java |    20 -
 .../net/sf/jabref/imports/BibtexParserTest.java    |   332 -
 .../net/sf/jabref/imports/CopacImporterTest.java   |    81 -
 .../sf/jabref/imports/DatabaseFileLookupTest.java  |   273 -
 .../imports/EntryFromFileCreatorManagerTest.java   |    86 -
 .../sf/jabref/imports/EntryFromPDFCreatorTest.java |    52 -
 .../net/sf/jabref/imports/GeneralFetcherTest.java  |    68 -
 .../net/sf/jabref/imports/IsiImporterTest.java     |   370 -
 .../net/sf/jabref/imports/OAI2ImportTest.java      |   172 -
 .../net/sf/jabref/imports/RISImporterTest.java     |   108 -
 .../jabref/imports/UnlinkedFilesCrawlerTest.java   |    58 -
 .../sf/jabref/imports/UnlinkedFilesTestSuite.java  |    24 -
 .../tests/net/sf/jabref/labelPattern/AllTests.java |    18 -
 .../jabref/labelPattern/LabelPatternUtilTest.java  |   233 -
 src/java/tests/net/sf/jabref/search/AllTests.java  |    16 -
 .../net/sf/jabref/search/BasicSearchTest.java      |    58 -
 .../tests/net/sf/jabref/testutils/TestUtils.java   |    66 -
 src/java/tests/net/sf/jabref/util/AllTests.java    |    18 -
 .../tests/net/sf/jabref/util/CaseChangerTest.java  |    58 -
 .../net/sf/jabref/util/XMPSchemaBibtexTest.java    |   262 -
 src/java/tests/net/sf/jabref/util/XMPUtilTest.java |  1632 --
 .../java/net/sf/jabref/benchmarks/Benchmarks.java  |   139 +
 src/main/antlr3/net/sf/jabref/bst/Bst.g            |    96 +
 src/main/antlr4/net/sf/jabref/search/Search.g4     |    49 +
 .../java/net/sf/jabref/BibDatabaseContext.java     |   222 +
 src/main/java/net/sf/jabref/Defaults.java          |    17 +
 src/main/java/net/sf/jabref/Globals.java           |   105 +
 src/main/java/net/sf/jabref/JabRefException.java   |    40 +
 .../java/net/sf/jabref/JabRefExecutorService.java  |   141 +
 src/main/java/net/sf/jabref/JabRefGUI.java         |   315 +
 src/main/java/net/sf/jabref/JabRefMain.java        |   122 +
 src/main/java/net/sf/jabref/MetaData.java          |   480 +
 .../java/net/sf/jabref/cli/ArgumentProcessor.java  |   586 +
 .../java/net/sf/jabref/cli/AuxCommandLine.java     |    29 +
 .../sf/jabref/cli/CrossrefFetcherEvaluator.java    |    90 +
 .../net/sf/jabref/cli/GenerateCharacterTable.java  |    49 +
 .../sf/jabref/cli/ImportInspectionCommandLine.java |    40 +
 src/main/java/net/sf/jabref/cli/JabRefCLI.java     |   263 +
 .../net/sf/jabref/cli/SystemOutputPrinter.java     |    21 +
 src/main/java/net/sf/jabref/cli/XMPUtilMain.java   |   177 +
 src/main/java/net/sf/jabref/collab/Change.java     |    67 +
 .../net/sf/jabref/collab/ChangeDisplayDialog.java  |   149 +
 .../java/net/sf/jabref/collab/ChangeScanner.java   |   502 +
 .../java/net/sf/jabref/collab/EntryAddChange.java  |    44 +
 .../java/net/sf/jabref/collab/EntryChange.java     |   160 +
 .../net/sf/jabref/collab/EntryDeleteChange.java    |    60 +
 .../net/sf/jabref/collab/FileUpdateListener.java   |    15 +
 .../net/sf/jabref/collab/FileUpdateMonitor.java    |   225 +
 .../java/net/sf/jabref/collab/FileUpdatePanel.java |   108 +
 .../java/net/sf/jabref/collab/GroupChange.java     |    73 +
 src/main/java/net/sf/jabref/collab/InfoPane.java   |    23 +
 .../java/net/sf/jabref/collab/MetaDataChange.java  |   122 +
 .../java/net/sf/jabref/collab/PreambleChange.java  |    53 +
 .../java/net/sf/jabref/collab/StringAddChange.java |    65 +
 .../java/net/sf/jabref/collab/StringChange.java    |    91 +
 .../net/sf/jabref/collab/StringNameChange.java     |    82 +
 .../net/sf/jabref/collab/StringRemoveChange.java   |    59 +
 .../net/sf/jabref/event/GroupUpdatedEvent.java     |    19 +
 .../net/sf/jabref/event/MetaDataChangedEvent.java  |    22 +
 .../sf/jabref/event/source/EntryEventSource.java   |    11 +
 .../net/sf/jabref/external/AttachFileAction.java   |    54 +
 .../java/net/sf/jabref/external/AutoSetLinks.java  |   222 +
 .../external/ConfirmCloseFileListEntryEditor.java  |    14 +
 .../sf/jabref/external/DownloadExternalFile.java   |   349 +
 .../net/sf/jabref/external/DroppedFileHandler.java |   542 +
 .../sf/jabref/external/ExternalFileMenuItem.java   |   112 +
 .../net/sf/jabref/external/ExternalFileType.java   |   222 +
 .../sf/jabref/external/ExternalFileTypeEditor.java |   386 +
 .../external/ExternalFileTypeEntryEditor.java      |   249 +
 .../net/sf/jabref/external/ExternalFileTypes.java  |   325 +
 .../net/sf/jabref/external/FindFullTextAction.java |    90 +
 .../net/sf/jabref/external/MoveFileAction.java     |   196 +
 .../net/sf/jabref/external/RegExpFileSearch.java   |   335 +
 .../sf/jabref/external/SynchronizeFileField.java   |   397 +
 .../external/TransferableFileLinkSelection.java    |   105 +
 .../jabref/external/UnknownExternalFileType.java   |    16 +
 .../net/sf/jabref/external/WriteXMPAction.java     |   293 +
 .../jabref/external/WriteXMPEntryEditorAction.java |   143 +
 src/main/java/net/sf/jabref/gui/BasePanel.java     |  2434 +++
 src/main/java/net/sf/jabref/gui/BasePanelMode.java |    12 +
 .../net/sf/jabref/gui/BibtexKeyPatternDialog.java  |   100 +
 .../java/net/sf/jabref/gui/ClipBoardManager.java   |   112 +
 .../net/sf/jabref/gui/ContentSelectorDialog2.java  |   517 +
 src/main/java/net/sf/jabref/gui/DragDropPane.java  |   159 +
 .../java/net/sf/jabref/gui/DragDropPopupPane.java  |    31 +
 .../net/sf/jabref/gui/DuplicateResolverDialog.java |   149 +
 .../java/net/sf/jabref/gui/DuplicateSearch.java    |   221 +
 .../java/net/sf/jabref/gui/EntryContainer.java     |    12 +
 .../sf/jabref/gui/EntryCustomizationDialog.java    |   464 +
 src/main/java/net/sf/jabref/gui/EntryMarker.java   |   197 +
 .../java/net/sf/jabref/gui/EntryTypeDialog.java    |   175 +
 src/main/java/net/sf/jabref/gui/EntryTypeList.java |   144 +
 .../net/sf/jabref/gui/FieldContentSelector.java    |   228 +
 .../java/net/sf/jabref/gui/FieldSetComponent.java  |   379 +
 src/main/java/net/sf/jabref/gui/FileDialog.java    |   221 +
 src/main/java/net/sf/jabref/gui/FileListEntry.java |    45 +
 .../net/sf/jabref/gui/FileListEntryEditor.java     |   362 +
 .../java/net/sf/jabref/gui/FileListTableModel.java |   222 +
 .../net/sf/jabref/gui/FindUnlinkedFilesDialog.java |  1177 ++
 src/main/java/net/sf/jabref/gui/GUIGlobals.java    |   158 +
 .../net/sf/jabref/gui/GenFieldsCustomizer.java     |   178 +
 .../net/sf/jabref/gui/GlobalFocusListener.java     |    31 +
 src/main/java/net/sf/jabref/gui/IconTheme.java     |   313 +
 src/main/java/net/sf/jabref/gui/JabRefFrame.java   |  2358 +++
 src/main/java/net/sf/jabref/gui/MergeDialog.java   |   119 +
 .../net/sf/jabref/gui/OSXCompatibleToolbar.java    |    39 +
 .../java/net/sf/jabref/gui/PreambleEditor.java     |   236 +
 src/main/java/net/sf/jabref/gui/PreviewPanel.java  |   355 +
 .../net/sf/jabref/gui/ReplaceStringDialog.java     |   228 +
 .../net/sf/jabref/gui/SaveOrderConfigDisplay.java  |   109 +
 src/main/java/net/sf/jabref/gui/SidePane.java      |    93 +
 .../java/net/sf/jabref/gui/SidePaneComponent.java  |   103 +
 .../java/net/sf/jabref/gui/SidePaneManager.java    |   271 +
 src/main/java/net/sf/jabref/gui/StringDialog.java  |   474 +
 .../net/sf/jabref/gui/TransferableBibtexEntry.java |    69 +
 .../net/sf/jabref/gui/WaitForSaveOperation.java    |    82 +
 src/main/java/net/sf/jabref/gui/WrapLayout.java    |   175 +
 .../java/net/sf/jabref/gui/actions/Actions.java    |    68 +
 .../sf/jabref/gui/actions/AutoLinkFilesAction.java |    60 +
 .../java/net/sf/jabref/gui/actions/BaseAction.java |    12 +
 .../sf/jabref/gui/actions/ChangeTypeAction.java    |    25 +
 .../net/sf/jabref/gui/actions/CleanupAction.java   |   166 +
 .../java/net/sf/jabref/gui/actions/CopyAction.java |    38 +
 .../gui/actions/CopyVersionToClipboardAction.java  |    23 +
 .../sf/jabref/gui/actions/ErrorConsoleAction.java  |    80 +
 .../jabref/gui/actions/IntegrityCheckAction.java   |   130 +
 .../jabref/gui/actions/ManageKeywordsAction.java   |   412 +
 .../sf/jabref/gui/actions/MassSetFieldAction.java  |   320 +
 .../sf/jabref/gui/actions/MnemonicAwareAction.java |    44 +
 .../sf/jabref/gui/actions/NewDatabaseAction.java   |    38 +
 .../net/sf/jabref/gui/actions/NewEntryAction.java  |    71 +
 .../jabref/gui/actions/NewSubDatabaseAction.java   |    49 +
 .../sf/jabref/gui/actions/OpenBrowserAction.java   |    49 +
 .../gui/actions/OpenSharedDatabaseAction.java      |    32 +
 .../net/sf/jabref/gui/actions/PasteAction.java     |    45 +
 .../jabref/gui/actions/SearchForUpdateAction.java  |    20 +
 .../net/sf/jabref/gui/actions/SortTabsAction.java  |    46 +
 .../gui/autocompleter/AutoCompleteListener.java    |   482 +
 .../gui/autocompleter/AutoCompleteRenderer.java    |    60 +
 .../gui/autocompleter/AutoCompleteSupport.java     |   282 +
 .../autocompleter/ListAutoCompleteRenderer.java    |    88 +
 .../net/sf/jabref/gui/auximport/FromAuxDialog.java |   228 +
 .../bibtexkeypattern/BibtexKeyPatternPanel.java    |   264 +
 .../ResolveDuplicateLabelDialog.java               |   144 +
 .../bibtexkeypattern/SearchFixDuplicateLabels.java |   108 +
 .../gui/cleanup/CleanupActionsListModel.java       |    81 +
 .../sf/jabref/gui/cleanup/CleanupPresetPanel.java  |   149 +
 .../gui/cleanup/FieldFormatterCleanupsPanel.java   |   311 +
 .../net/sf/jabref/gui/date/DatePickerButton.java   |    60 +
 .../gui/dbproperties/DatabasePropertiesDialog.java |   309 +
 .../net/sf/jabref/gui/desktop/JabRefDesktop.java   |   352 +
 .../sf/jabref/gui/desktop/os/DefaultDesktop.java   |    39 +
 .../java/net/sf/jabref/gui/desktop/os/Linux.java   |    88 +
 .../sf/jabref/gui/desktop/os/NativeDesktop.java    |    22 +
 .../java/net/sf/jabref/gui/desktop/os/OSX.java     |    47 +
 .../java/net/sf/jabref/gui/desktop/os/Windows.java |    55 +
 .../net/sf/jabref/gui/entryeditor/EntryEditor.java |  1521 ++
 .../sf/jabref/gui/entryeditor/EntryEditorTab.java  |   402 +
 .../entryeditor/EntryEditorTabFocusListener.java   |   109 +
 .../jabref/gui/entryeditor/EntryEditorTabList.java |    61 +
 .../gui/entryeditor/FieldExtraComponents.java      |   600 +
 .../sf/jabref/gui/exporter/AutoSaveManager.java    |   119 +
 .../sf/jabref/gui/exporter/CustomExportDialog.java |   203 +
 .../net/sf/jabref/gui/exporter/ExportAction.java   |   192 +
 .../gui/exporter/ExportCustomizationDialog.java    |   191 +
 .../sf/jabref/gui/exporter/ExportFileFilter.java   |    70 +
 .../gui/exporter/ExportToClipboardAction.java      |   142 +
 .../net/sf/jabref/gui/exporter/RtfSelection.java   |    54 +
 .../net/sf/jabref/gui/exporter/SaveAllAction.java  |    61 +
 .../sf/jabref/gui/exporter/SaveDatabaseAction.java |   410 +
 .../sf/jabref/gui/fieldeditors/FieldEditor.java    |    83 +
 .../gui/fieldeditors/FieldEditorFocusListener.java |    31 +
 .../sf/jabref/gui/fieldeditors/FieldNameLabel.java |    39 +
 .../sf/jabref/gui/fieldeditors/FileListEditor.java |   560 +
 .../FileListEditorTransferHandler.java             |   152 +
 .../jabref/gui/fieldeditors/HtmlTransferable.java  |    58 +
 .../fieldeditors/JTextAreaWithHighlighting.java    |   167 +
 .../fieldeditors/PreviewPanelTransferHandler.java  |    63 +
 .../net/sf/jabref/gui/fieldeditors/TextArea.java   |   163 +
 .../net/sf/jabref/gui/fieldeditors/TextField.java  |   223 +
 .../fieldeditors/contextmenu/CaseChangeMenu.java   |    27 +
 .../fieldeditors/contextmenu/ConversionMenu.java   |    28 +
 .../fieldeditors/contextmenu/FieldTextMenu.java    |   125 +
 .../contextmenu/ProtectedTermsMenu.java            |    74 +
 .../net/sf/jabref/gui/groups/AddToGroupAction.java |   110 +
 .../net/sf/jabref/gui/groups/AutoGroupDialog.java  |   199 +
 .../gui/groups/EntryTableTransferHandler.java      |   391 +
 .../sf/jabref/gui/groups/GroupAddRemoveDialog.java |   219 +
 .../java/net/sf/jabref/gui/groups/GroupDialog.java |   488 +
 .../net/sf/jabref/gui/groups/GroupMatcher.java     |    19 +
 .../net/sf/jabref/gui/groups/GroupSelector.java    |  1271 ++
 .../jabref/gui/groups/GroupTreeCellRenderer.java   |   148 +
 .../jabref/gui/groups/GroupTreeNodeViewModel.java  |   406 +
 .../java/net/sf/jabref/gui/groups/GroupsTree.java  |   442 +
 .../jabref/gui/groups/RemoveFromGroupAction.java   |    53 +
 .../gui/groups/TransferableEntrySelection.java     |    85 +
 .../gui/groups/UndoableAddOrRemoveGroup.java       |   143 +
 .../gui/groups/UndoableChangeAssignment.java       |    65 +
 .../gui/groups/UndoableChangeEntriesOfGroup.java   |    32 +
 .../sf/jabref/gui/groups/UndoableModifyGroup.java  |    56 +
 .../jabref/gui/groups/UndoableModifySubtree.java   |    66 +
 .../sf/jabref/gui/groups/UndoableMoveGroup.java    |    57 +
 .../gui/groups/WarnAssignmentSideEffects.java      |    94 +
 .../java/net/sf/jabref/gui/help/AboutAction.java   |    24 +
 .../java/net/sf/jabref/gui/help/AboutDialog.java   |    98 +
 .../java/net/sf/jabref/gui/help/HelpAction.java    |    91 +
 .../net/sf/jabref/gui/help/NewVersionDialog.java   |    95 +
 .../gui/importer/EntryFromExternalFileCreator.java |    36 +
 .../jabref/gui/importer/EntryFromFileCreator.java  |   190 +
 .../gui/importer/EntryFromFileCreatorManager.java  |   223 +
 .../jabref/gui/importer/EntryFromPDFCreator.java   |   139 +
 .../jabref/gui/importer/FetcherPreviewDialog.java  |   305 +
 .../gui/importer/ImportCustomizationDialog.java    |   317 +
 .../sf/jabref/gui/importer/ImportFileFilter.java   |    64 +
 .../net/sf/jabref/gui/importer/ImportFormats.java  |   100 +
 .../gui/importer/ImportInspectionDialog.java       |  1483 ++
 .../net/sf/jabref/gui/importer/ImportMenuItem.java |   254 +
 .../gui/importer/ParserResultWarningDialog.java    |    84 +
 .../jabref/gui/importer/UnlinkedFilesCrawler.java  |   104 +
 .../jabref/gui/importer/UnlinkedPDFFileFilter.java |    38 +
 .../net/sf/jabref/gui/importer/ZipFileChooser.java |   251 +
 .../gui/importer/actions/AppendDatabaseAction.java |   175 +
 .../actions/CheckForNewEntryTypesAction.java       |    65 +
 .../actions/ConvertLegacyExplicitGroups.java       |    59 +
 .../importer/actions/HandleDuplicateWarnings.java  |    31 +
 .../gui/importer/actions/OpenDatabaseAction.java   |   324 +
 .../gui/importer/actions/PostOpenAction.java       |    38 +
 .../gui/importer/fetcher/ACMPortalFetcher.java     |   416 +
 .../sf/jabref/gui/importer/fetcher/ADSFetcher.java |   166 +
 .../gui/importer/fetcher/CiteSeerXFetcher.java     |   163 +
 .../jabref/gui/importer/fetcher/DBLPFetcher.java   |   164 +
 .../jabref/gui/importer/fetcher/DOAJFetcher.java   |   126 +
 .../gui/importer/fetcher/DOItoBibTeXFetcher.java   |    53 +
 .../gui/importer/fetcher/DiVAtoBibTeXFetcher.java  |   129 +
 .../jabref/gui/importer/fetcher/EntryFetcher.java  |    70 +
 .../jabref/gui/importer/fetcher/EntryFetchers.java |    40 +
 .../gui/importer/fetcher/GeneralFetcher.java       |   284 +
 .../gui/importer/fetcher/GoogleScholarFetcher.java |   309 +
 .../gui/importer/fetcher/IEEEXploreFetcher.java    |   501 +
 .../gui/importer/fetcher/INSPIREFetcher.java       |   174 +
 .../gui/importer/fetcher/ISBNtoBibTeXFetcher.java  |   154 +
 .../gui/importer/fetcher/MedlineFetcher.java       |   257 +
 .../jabref/gui/importer/fetcher/OAI2Fetcher.java   |   298 +
 .../gui/importer/fetcher/PreviewEntryFetcher.java  |    31 +
 .../gui/importer/fetcher/ScienceDirectFetcher.java |   143 +
 .../importer/fetcher/SearchBasedEntryFetcher.java  |    67 +
 .../gui/importer/fetcher/SpringerFetcher.java      |   129 +
 .../importer/worker/AutosaveStartupPrompter.java   |   101 +
 .../sf/jabref/gui/journals/AbbreviateAction.java   |    68 +
 .../gui/journals/JournalAbbreviationsUtil.java     |    31 +
 .../jabref/gui/journals/ManageJournalsAction.java  |    28 +
 .../jabref/gui/journals/ManageJournalsPanel.java   |   649 +
 .../sf/jabref/gui/journals/UnabbreviateAction.java |    65 +
 .../jabref/gui/journals/UndoableAbbreviator.java   |    64 +
 .../jabref/gui/journals/UndoableUnabbreviator.java |    53 +
 .../sf/jabref/gui/keyboard/EmacsKeyBindings.java   |   843 +
 .../java/net/sf/jabref/gui/keyboard/KeyBinder.java |    26 +
 .../net/sf/jabref/gui/keyboard/KeyBinding.java     |   114 +
 .../jabref/gui/keyboard/KeyBindingPreferences.java |   124 +
 .../jabref/gui/keyboard/KeyBindingRepository.java  |    80 +
 .../sf/jabref/gui/keyboard/KeyBindingTable.java    |    17 +
 .../jabref/gui/keyboard/KeyBindingTableModel.java  |    65 +
 .../sf/jabref/gui/keyboard/KeyBindingsDialog.java  |   143 +
 .../jabref/gui/keyboard/KeyBindingsListener.java   |    66 +
 .../sf/jabref/gui/maintable/ListSynchronizer.java  |    62 +
 .../net/sf/jabref/gui/maintable/MainTable.java     |   708 +
 .../sf/jabref/gui/maintable/MainTableColumn.java   |   160 +
 .../jabref/gui/maintable/MainTableDataModel.java   |   246 +
 .../sf/jabref/gui/maintable/MainTableFormat.java   |   154 +
 .../gui/maintable/MainTableHeaderRenderer.java     |    38 +
 .../gui/maintable/MainTableNameFormatter.java      |    42 +
 .../gui/maintable/MainTableSelectionListener.java  |   557 +
 .../maintable/PersistenceTableColumnListener.java  |   128 +
 .../gui/maintable/PreventDraggingJTableHeader.java |    97 +
 .../gui/maintable/SpecialMainTableColumns.java     |   190 +
 .../sf/jabref/gui/menus/ChangeEntryTypeMenu.java   |    86 +
 .../net/sf/jabref/gui/menus/FileHistoryMenu.java   |    99 +
 .../net/sf/jabref/gui/menus/RightClickMenu.java    |   309 +
 .../gui/mergeentries/FetchAndMergeEntry.java       |    90 +
 .../sf/jabref/gui/mergeentries/MergeEntries.java   |   453 +
 .../gui/mergeentries/MergeEntriesDialog.java       |   124 +
 .../gui/mergeentries/MergeFetchedEntryDialog.java  |   158 +
 .../sf/jabref/gui/net/MonitoredURLDownload.java    |    22 +
 .../jabref/gui/openoffice/AdvancedCiteDialog.java  |   112 +
 .../sf/jabref/gui/openoffice/AutoDetectPaths.java  |   269 +
 .../gui/openoffice/BibEntryNotFoundException.java  |    24 +
 .../sf/jabref/gui/openoffice/CitationManager.java  |   242 +
 .../gui/openoffice/ConnectionLostException.java    |    11 +
 .../jabref/gui/openoffice/CreationException.java   |    13 +
 .../jabref/gui/openoffice/NoDocumentException.java |    13 +
 .../net/sf/jabref/gui/openoffice/OOBibBase.java    |  1388 ++
 .../sf/jabref/gui/openoffice/OpenOfficePanel.java  |   836 +
 .../jabref/gui/openoffice/StyleSelectDialog.java   |   538 +
 .../UndefinedCharacterFormatException.java         |    20 +
 .../gui/plaintextimport/TagToMarkedTextStore.java  |    82 +
 .../gui/plaintextimport/TextInputDialog.java       |   740 +
 .../net/sf/jabref/gui/preftabs/AdvancedTab.java    |   169 +
 .../sf/jabref/gui/preftabs/AppearancePrefsTab.java |   287 +
 .../gui/preftabs/BibtexKeyPatternPrefTab.java      |   171 +
 .../sf/jabref/gui/preftabs/ColorSetupPanel.java    |   205 +
 .../jabref/gui/preftabs/EntryEditorPrefsTab.java   |   276 +
 .../net/sf/jabref/gui/preftabs/ExternalTab.java    |   200 +
 .../net/sf/jabref/gui/preftabs/FileSortTab.java    |   114 +
 .../java/net/sf/jabref/gui/preftabs/FileTab.java   |   294 +
 .../sf/jabref/gui/preftabs/FontSelectorDialog.java |   350 +
 .../net/sf/jabref/gui/preftabs/GeneralTab.java     |   264 +
 .../net/sf/jabref/gui/preftabs/GroupsPrefsTab.java |   125 +
 .../sf/jabref/gui/preftabs/ImportSettingsTab.java  |   167 +
 .../sf/jabref/gui/preftabs/NameFormatterTab.java   |   334 +
 .../net/sf/jabref/gui/preftabs/NetworkTab.java     |   175 +
 .../sf/jabref/gui/preftabs/PreferencesDialog.java  |   287 +
 .../gui/preftabs/PreferencesFilterDialog.java      |   127 +
 .../java/net/sf/jabref/gui/preftabs/PrefsTab.java  |    42 +
 .../sf/jabref/gui/preftabs/PreviewPrefsTab.java    |   191 +
 .../sf/jabref/gui/preftabs/TableColumnsTab.java    |   796 +
 .../net/sf/jabref/gui/preftabs/TablePrefsTab.java  |   302 +
 .../net/sf/jabref/gui/preftabs/XmpPrefsTab.java    |   276 +
 .../NewProtectedTermsFileDialog.java               |   115 +
 .../gui/protectedterms/ProtectedTermsDialog.java   |   501 +
 .../jabref/gui/push/AbstractPushToApplication.java |   170 +
 .../net/sf/jabref/gui/push/PushToApplication.java  |    66 +
 .../jabref/gui/push/PushToApplicationAction.java   |    98 +
 .../jabref/gui/push/PushToApplicationButton.java   |   314 +
 .../net/sf/jabref/gui/push/PushToApplications.java |    30 +
 .../java/net/sf/jabref/gui/push/PushToEmacs.java   |   172 +
 .../net/sf/jabref/gui/push/PushToLatexEditor.java  |    38 +
 .../java/net/sf/jabref/gui/push/PushToLyx.java     |   115 +
 .../net/sf/jabref/gui/push/PushToTeXstudio.java    |    33 +
 .../net/sf/jabref/gui/push/PushToTexmaker.java     |    33 +
 .../java/net/sf/jabref/gui/push/PushToVim.java     |   142 +
 .../java/net/sf/jabref/gui/push/PushToWinEdt.java  |    30 +
 .../sf/jabref/gui/remote/JabRefMessageHandler.java |    26 +
 .../sf/jabref/gui/renderer/CompleteRenderer.java   |    19 +
 .../sf/jabref/gui/renderer/GeneralRenderer.java    |    93 +
 .../sf/jabref/gui/renderer/IncompleteRenderer.java |    22 +
 .../sf/jabref/gui/search/GlobalSearchWorker.java   |    51 +
 .../sf/jabref/gui/search/HitOrMissComparator.java  |    30 +
 .../gui/search/JTextFieldChangeListenerUtil.java   |    83 +
 .../java/net/sf/jabref/gui/search/SearchBar.java   |   367 +
 .../java/net/sf/jabref/gui/search/SearchMode.java  |    31 +
 .../sf/jabref/gui/search/SearchResultsDialog.java  |   501 +
 .../net/sf/jabref/gui/search/SearchWorker.java     |   103 +
 .../gui/search/matchers/EverythingMatcher.java     |    19 +
 .../jabref/gui/search/matchers/SearchMatcher.java  |    19 +
 .../jabref/gui/shared/MergeSharedEntryDialog.java  |   112 +
 .../sf/jabref/gui/shared/MigrationHelpDialog.java  |    80 +
 .../gui/shared/OpenSharedDatabaseDialog.java       |   350 +
 .../jabref/gui/shared/SharedDatabaseUIManager.java |    83 +
 .../gui/undo/AbstractUndoableJabRefEdit.java       |    20 +
 .../sf/jabref/gui/undo/CountingUndoManager.java    |    73 +
 .../java/net/sf/jabref/gui/undo/NamedCompound.java |    47 +
 .../net/sf/jabref/gui/undo/UndoableChangeType.java |    40 +
 .../sf/jabref/gui/undo/UndoableFieldChange.java    |    80 +
 .../sf/jabref/gui/undo/UndoableInsertEntry.java    |    60 +
 .../sf/jabref/gui/undo/UndoableInsertString.java   |    57 +
 .../net/sf/jabref/gui/undo/UndoableKeyChange.java  |    57 +
 .../sf/jabref/gui/undo/UndoablePreambleChange.java |    57 +
 .../sf/jabref/gui/undo/UndoableRemoveEntry.java    |    60 +
 .../sf/jabref/gui/undo/UndoableRemoveString.java   |    57 +
 .../sf/jabref/gui/undo/UndoableStringChange.java   |    67 +
 .../net/sf/jabref/gui/util/FocusRequester.java     |    29 +
 src/main/java/net/sf/jabref/gui/util/GUIUtil.java  |    39 +
 .../net/sf/jabref/gui/util/PositionWindow.java     |   111 +
 .../gui/util/comparator/FirstColumnComparator.java |    35 +
 .../jabref/gui/util/comparator/IconComparator.java |    50 +
 .../gui/util/comparator/IsMarkedComparator.java    |    17 +
 .../util/comparator/RankingFieldComparator.java    |    43 +
 .../jabref/gui/util/component/CheckBoxMessage.java |    37 +
 .../util/component/DiffHighlightingTextPane.java   |    28 +
 .../component/JTextFieldWithUnfocusedText.java     |    62 +
 .../sf/jabref/gui/util/component/OverlayPanel.java |    54 +
 .../jabref/gui/util/component/VerticalLabelUI.java |   165 +
 .../net/sf/jabref/gui/worker/AbstractWorker.java   |    54 +
 .../java/net/sf/jabref/gui/worker/CallBack.java    |    11 +
 .../sf/jabref/gui/worker/MarkEntriesAction.java    |    98 +
 .../sf/jabref/gui/worker/SendAsEMailAction.java    |   133 +
 .../net/sf/jabref/gui/worker/VersionWorker.java    |    86 +
 src/main/java/net/sf/jabref/gui/worker/Worker.java |     8 +
 .../sf/jabref/logic/CustomEntryTypesManager.java   |    54 +
 .../java/net/sf/jabref/logic/TypedBibEntry.java    |    92 +
 .../logic/autocompleter/AbstractAutoCompleter.java |   134 +
 .../autocompleter/AutoCompleteFirstNameMode.java   |     8 +
 .../autocompleter/AutoCompletePreferences.java     |    91 +
 .../jabref/logic/autocompleter/AutoCompleter.java  |    57 +
 .../logic/autocompleter/AutoCompleterFactory.java  |    45 +
 .../jabref/logic/autocompleter/AutoCompleters.java |    39 +
 .../autocompleter/BibtexKeyAutoCompleter.java      |    38 +
 .../logic/autocompleter/ContentAutoCompleters.java |    42 +
 .../logic/autocompleter/DefaultAutoCompleter.java  |    51 +
 .../autocompleter/EntireFieldAutoCompleter.java    |    43 +
 .../logic/autocompleter/JournalAutoCompleter.java  |    37 +
 .../autocompleter/NameFieldAutoCompleter.java      |   172 +
 .../net/sf/jabref/logic/auxparser/AuxParser.java   |   174 +
 .../sf/jabref/logic/auxparser/AuxParserResult.java |    92 +
 .../net/sf/jabref/logic/bibtex/BibEntryWriter.java |   189 +
 .../sf/jabref/logic/bibtex/FieldContentParser.java |    52 +
 .../bibtex/FieldContentParserPreferences.java      |    30 +
 .../jabref/logic/bibtex/LatexFieldFormatter.java   |   282 +
 .../bibtex/LatexFieldFormatterPreferences.java     |    49 +
 .../bibtex/comparator/BibtexStringComparator.java  |    66 +
 .../bibtex/comparator/CrossRefEntryComparator.java |    34 +
 .../logic/bibtex/comparator/EntryComparator.java   |   130 +
 .../logic/bibtex/comparator/FieldComparator.java   |   156 +
 .../bibtex/comparator/FieldComparatorStack.java    |    30 +
 .../logic/bibtex/comparator/IdComparator.java      |    18 +
 .../BibtexKeyPatternPreferences.java               |    63 +
 .../bibtexkeypattern/BibtexKeyPatternUtil.java     |  1363 ++
 .../net/sf/jabref/logic/bst/BibtexCaseChanger.java |   305 +
 .../sf/jabref/logic/bst/BibtexNameFormatter.java   |   315 +
 .../java/net/sf/jabref/logic/bst/BibtexPurify.java |    79 +
 .../net/sf/jabref/logic/bst/BibtexTextPrefix.java  |    75 +
 .../java/net/sf/jabref/logic/bst/BibtexWidth.java  |   249 +
 .../sf/jabref/logic/bst/ChangeCaseFunction.java    |    66 +
 .../sf/jabref/logic/bst/FormatNameFunction.java    |    68 +
 .../net/sf/jabref/logic/bst/PurifyFunction.java    |    44 +
 .../sf/jabref/logic/bst/TextPrefixFunction.java    |    56 +
 src/main/java/net/sf/jabref/logic/bst/VM.java      |  1252 ++
 .../java/net/sf/jabref/logic/bst/VMException.java  |     9 +
 src/main/java/net/sf/jabref/logic/bst/Warn.java    |     7 +
 .../net/sf/jabref/logic/bst/WidthFunction.java     |    44 +
 .../sf/jabref/logic/cleanup/BiblatexCleanup.java   |    55 +
 .../net/sf/jabref/logic/cleanup/CleanupJob.java    |    16 +
 .../net/sf/jabref/logic/cleanup/CleanupPreset.java |   153 +
 .../net/sf/jabref/logic/cleanup/CleanupWorker.java |    84 +
 .../net/sf/jabref/logic/cleanup/DoiCleanup.java    |    77 +
 .../logic/cleanup/FieldFormatterCleanup.java       |   106 +
 .../sf/jabref/logic/cleanup/FileLinksCleanup.java  |    36 +
 .../net/sf/jabref/logic/cleanup/ISSNCleanup.java   |    32 +
 .../sf/jabref/logic/cleanup/MoveFilesCleanup.java  |    81 +
 .../jabref/logic/cleanup/RelativePathsCleanup.java |    57 +
 .../sf/jabref/logic/cleanup/RenamePdfCleanup.java  |   123 +
 .../logic/cleanup/UpgradePdfPsToFileCleanup.java   |    58 +
 .../sf/jabref/logic/config/SaveOrderConfig.java    |   219 +
 .../sf/jabref/logic/error/StreamEavesdropper.java  |    50 +
 .../java/net/sf/jabref/logic/error/TeeStream.java  |    34 +
 .../jabref/logic/exporter/BibDatabaseWriter.java   |   313 +
 .../logic/exporter/BibtexDatabaseWriter.java       |   160 +
 .../sf/jabref/logic/exporter/CustomExportList.java |   133 +
 .../sf/jabref/logic/exporter/ExportComparator.java |    13 +
 .../net/sf/jabref/logic/exporter/ExportFormat.java |   381 +
 .../sf/jabref/logic/exporter/ExportFormats.java    |   123 +
 .../logic/exporter/FieldFormatterCleanups.java     |   228 +
 .../sf/jabref/logic/exporter/FileSaveSession.java  |   120 +
 .../sf/jabref/logic/exporter/IExportFormat.java    |    55 +
 .../jabref/logic/exporter/MSBibExportFormat.java   |    59 +
 .../sf/jabref/logic/exporter/ModsExportFormat.java |    58 +
 .../sf/jabref/logic/exporter/OOCalcDatabase.java   |   208 +
 .../logic/exporter/OpenDocumentRepresentation.java |   214 +
 .../exporter/OpenDocumentSpreadsheetCreator.java   |   152 +
 .../logic/exporter/OpenOfficeDocumentCreator.java  |   134 +
 .../sf/jabref/logic/exporter/SaveException.java    |    78 +
 .../sf/jabref/logic/exporter/SavePreferences.java  |   140 +
 .../net/sf/jabref/logic/exporter/SaveSession.java  |    52 +
 .../jabref/logic/exporter/StringSaveSession.java   |    54 +
 .../sf/jabref/logic/exporter/VerifyingWriter.java  |    52 +
 .../net/sf/jabref/logic/formatter/Formatter.java   |    74 +
 .../net/sf/jabref/logic/formatter/Formatters.java  |    66 +
 .../jabref/logic/formatter/IdentityFormatter.java  |    48 +
 .../formatter/bibtexfields/ClearFormatter.java     |    36 +
 .../bibtexfields/HtmlToLatexFormatter.java         |   138 +
 .../bibtexfields/HtmlToUnicodeFormatter.java       |    36 +
 .../bibtexfields/LatexCleanupFormatter.java        |    48 +
 .../bibtexfields/NormalizeDateFormatter.java       |    88 +
 .../bibtexfields/NormalizeMonthFormatter.java      |    42 +
 .../bibtexfields/NormalizeNamesFormatter.java      |    38 +
 .../bibtexfields/NormalizePagesFormatter.java      |   100 +
 .../OrdinalsToSuperscriptFormatter.java            |    65 +
 .../bibtexfields/RemoveBracesFormatter.java        |    76 +
 .../bibtexfields/UnicodeToLatexFormatter.java      |    84 +
 .../bibtexfields/UnitsToLatexFormatter.java        |   142 +
 .../formatter/casechanger/CapitalizeFormatter.java |    41 +
 .../formatter/casechanger/LowerCaseFormatter.java  |    50 +
 .../casechanger/ProtectTermsFormatter.java         |    78 +
 .../casechanger/SentenceCaseFormatter.java         |    41 +
 .../jabref/logic/formatter/casechanger/Title.java  |    42 +
 .../formatter/casechanger/TitleCaseFormatter.java  |    53 +
 .../logic/formatter/casechanger/TitleParser.java   |    79 +
 .../formatter/casechanger/UpperCaseFormatter.java  |    41 +
 .../jabref/logic/formatter/casechanger/Word.java   |   101 +
 .../minifier/MinifyNameListFormatter.java          |    80 +
 .../net/sf/jabref/logic/groups/AbstractGroup.java  |   216 +
 .../sf/jabref/logic/groups/AllEntriesGroup.java    |    95 +
 .../sf/jabref/logic/groups/EntriesGroupChange.java |    43 +
 .../net/sf/jabref/logic/groups/ExplicitGroup.java  |   171 +
 .../sf/jabref/logic/groups/GroupHierarchyType.java |    28 +
 .../net/sf/jabref/logic/groups/GroupTreeNode.java  |   257 +
 .../net/sf/jabref/logic/groups/GroupsParser.java   |    47 +
 .../net/sf/jabref/logic/groups/GroupsUtil.java     |    80 +
 .../net/sf/jabref/logic/groups/KeywordGroup.java   |   395 +
 .../sf/jabref/logic/groups/MoveGroupChange.java    |    39 +
 .../net/sf/jabref/logic/groups/SearchGroup.java    |   192 +
 .../java/net/sf/jabref/logic/groups/TreeNode.java  |   606 +
 .../logic/groups/UnsupportedVersionException.java  |    10 +
 .../java/net/sf/jabref/logic/help/HelpFile.java    |    74 +
 .../sf/jabref/logic/importer/FetcherException.java |    13 +
 .../sf/jabref/logic/importer/FulltextFetcher.java  |    25 +
 .../sf/jabref/logic/importer/FulltextFetchers.java |    71 +
 .../sf/jabref/logic/importer/IdBasedFetcher.java   |    19 +
 .../net/sf/jabref/logic/importer/IdFetcher.java    |    19 +
 .../logic/importer/ImportFormatPreferences.java    |    81 +
 .../jabref/logic/importer/ImportFormatReader.java  |   231 +
 .../sf/jabref/logic/importer/ImportInspector.java  |    36 +
 .../sf/jabref/logic/importer/MimeTypeDetector.java |    58 +
 .../net/sf/jabref/logic/importer/OpenDatabase.java |   100 +
 .../sf/jabref/logic/importer/OutputPrinter.java    |    11 +
 .../net/sf/jabref/logic/importer/ParserResult.java |   180 +
 .../jabref/logic/importer/SearchBasedFetcher.java  |    20 +
 .../net/sf/jabref/logic/importer/WebFetcher.java   |    24 +
 .../net/sf/jabref/logic/importer/fetcher/ACS.java  |    58 +
 .../sf/jabref/logic/importer/fetcher/ArXiv.java    |   349 +
 .../logic/importer/fetcher/BibsonomyScraper.java   |    58 +
 .../sf/jabref/logic/importer/fetcher/CrossRef.java |   131 +
 .../jabref/logic/importer/fetcher/DOItoBibTeX.java |    99 +
 .../net/sf/jabref/logic/importer/fetcher/DiVA.java |    64 +
 .../logic/importer/fetcher/DoiResolution.java      |    80 +
 .../jabref/logic/importer/fetcher/GVKParser.java   |   486 +
 .../logic/importer/fetcher/GoogleScholar.java      |    65 +
 .../jabref/logic/importer/fetcher/GvkFetcher.java  |   106 +
 .../net/sf/jabref/logic/importer/fetcher/IEEE.java |    84 +
 .../logic/importer/fetcher/ScienceDirect.java      |    90 +
 .../logic/importer/fetcher/SpringerLink.java       |    62 +
 .../importer/fileformat/BibTeXMLImporter.java      |   248 +
 .../importer/fileformat/BiblioscapeImporter.java   |   283 +
 .../logic/importer/fileformat/BibtexImporter.java  |   130 +
 .../logic/importer/fileformat/BibtexParser.java    |   921 ++
 .../logic/importer/fileformat/CopacImporter.java   |   148 +
 .../logic/importer/fileformat/CustomImporter.java  |   130 +
 .../logic/importer/fileformat/EndnoteImporter.java |   292 +
 .../importer/fileformat/FreeCiteImporter.java      |   238 +
 .../logic/importer/fileformat/ImportFormat.java    |   170 +
 .../logic/importer/fileformat/InspecImporter.java  |   132 +
 .../logic/importer/fileformat/IsiImporter.java     |   421 +
 .../logic/importer/fileformat/MedlineImporter.java |   661 +
 .../importer/fileformat/MedlinePlainImporter.java  |   405 +
 .../logic/importer/fileformat/MsBibImporter.java   |    67 +
 .../logic/importer/fileformat/OvidImporter.java    |   245 +
 .../importer/fileformat/PdfContentImporter.java    |   598 +
 .../logic/importer/fileformat/PdfXmpImporter.java  |    83 +
 .../importer/fileformat/RepecNepImporter.java      |   456 +
 .../logic/importer/fileformat/RisImporter.java     |   264 +
 .../importer/fileformat/SilverPlatterImporter.java |   191 +
 .../sf/jabref/logic/importer/util/DBLPHelper.java  |    93 +
 .../importer/util/INSPIREBibtexFilterReader.java   |    89 +
 .../logic/importer/util/JSONEntryParser.java       |   229 +
 .../sf/jabref/logic/importer/util/OAI2Handler.java |   115 +
 .../jabref/logic/importer/util/ParseException.java |    12 +
 .../net/sf/jabref/logic/integrity/ISBNChecker.java |    38 +
 .../net/sf/jabref/logic/integrity/ISSNChecker.java |    40 +
 .../sf/jabref/logic/integrity/IntegrityCheck.java  |   472 +
 .../jabref/logic/integrity/IntegrityMessage.java   |    38 +
 .../net/sf/jabref/logic/journals/Abbreviation.java |    71 +
 .../jabref/logic/journals/AbbreviationParser.java  |   101 +
 .../logic/journals/JournalAbbreviationLoader.java  |   107 +
 .../journals/JournalAbbreviationPreferences.java   |    46 +
 .../journals/JournalAbbreviationRepository.java    |   122 +
 .../net/sf/jabref/logic/l10n/EncodingControl.java  |    58 +
 .../java/net/sf/jabref/logic/l10n/Encodings.java   |    20 +
 .../java/net/sf/jabref/logic/l10n/Languages.java   |    51 +
 .../net/sf/jabref/logic/l10n/Localization.java     |   103 +
 .../net/sf/jabref/logic/l10n/LocalizationKey.java  |    28 +
 .../jabref/logic/l10n/LocalizationKeyParams.java   |    31 +
 .../logic/layout/AbstractParamLayoutFormatter.java |    56 +
 .../java/net/sf/jabref/logic/layout/Layout.java    |   146 +
 .../net/sf/jabref/logic/layout/LayoutEntry.java    |   691 +
 .../sf/jabref/logic/layout/LayoutFormatter.java    |    31 +
 .../logic/layout/LayoutFormatterPreferences.java   |    68 +
 .../net/sf/jabref/logic/layout/LayoutHelper.java   |   372 +
 .../jabref/logic/layout/ParamLayoutFormatter.java  |    20 +
 .../java/net/sf/jabref/logic/layout/StringInt.java |    31 +
 .../logic/layout/format/AuthorAbbreviator.java     |    25 +
 .../layout/format/AuthorAndsCommaReplacer.java     |    46 +
 .../logic/layout/format/AuthorAndsReplacer.java    |    49 +
 .../layout/format/AuthorFirstAbbrLastCommas.java   |    22 +
 .../format/AuthorFirstAbbrLastOxfordCommas.java    |    26 +
 .../logic/layout/format/AuthorFirstFirst.java      |    16 +
 .../layout/format/AuthorFirstFirstCommas.java      |    23 +
 .../logic/layout/format/AuthorFirstLastCommas.java |    25 +
 .../layout/format/AuthorFirstLastOxfordCommas.java |    25 +
 .../sf/jabref/logic/layout/format/AuthorLF_FF.java |    17 +
 .../logic/layout/format/AuthorLF_FFAbbr.java       |    17 +
 .../logic/layout/format/AuthorLastFirst.java       |    12 +
 .../layout/format/AuthorLastFirstAbbrCommas.java   |    25 +
 .../format/AuthorLastFirstAbbrOxfordCommas.java    |    26 +
 .../layout/format/AuthorLastFirstAbbreviator.java  |    34 +
 .../logic/layout/format/AuthorLastFirstCommas.java |    24 +
 .../layout/format/AuthorLastFirstOxfordCommas.java |    24 +
 .../jabref/logic/layout/format/AuthorNatBib.java   |    18 +
 .../jabref/logic/layout/format/AuthorOrgSci.java   |    40 +
 .../net/sf/jabref/logic/layout/format/Authors.java |   309 +
 .../logic/layout/format/CompositeFormat.java       |    43 +
 .../logic/layout/format/CreateBibORDFAuthors.java  |    56 +
 .../logic/layout/format/CreateDocBookAuthors.java  |    51 +
 .../logic/layout/format/CreateDocBookEditors.java  |    21 +
 .../sf/jabref/logic/layout/format/CurrentDate.java |    35 +
 .../sf/jabref/logic/layout/format/DOICheck.java    |    23 +
 .../sf/jabref/logic/layout/format/DOIStrip.java    |    18 +
 .../jabref/logic/layout/format/DateFormatter.java  |    26 +
 .../net/sf/jabref/logic/layout/format/Default.java |    23 +
 .../logic/layout/format/EntryTypeFormatter.java    |    26 +
 .../sf/jabref/logic/layout/format/FileLink.java    |   101 +
 .../logic/layout/format/FileLinkPreferences.java   |    33 +
 .../sf/jabref/logic/layout/format/FirstPage.java   |    26 +
 .../logic/layout/format/FormatPagesForHTML.java    |    11 +
 .../logic/layout/format/FormatPagesForXML.java     |    11 +
 .../logic/layout/format/GetOpenOfficeType.java     |    61 +
 .../sf/jabref/logic/layout/format/HTMLChars.java   |   225 +
 .../jabref/logic/layout/format/HTMLParagraphs.java |    46 +
 .../sf/jabref/logic/layout/format/IfPlural.java    |    51 +
 .../logic/layout/format/Iso690FormatDate.java      |    32 +
 .../logic/layout/format/Iso690NamesAuthors.java    |    89 +
 .../logic/layout/format/JournalAbbreviator.java    |    41 +
 .../sf/jabref/logic/layout/format/LastPage.java    |    28 +
 .../layout/format/LatexToUnicodeFormatter.java     |   225 +
 .../jabref/logic/layout/format/NameFormatter.java  |   188 +
 .../layout/format/NameFormatterPreferences.java    |    31 +
 .../layout/format/NoSpaceBetweenAbbreviations.java |    34 +
 .../logic/layout/format/NotFoundFormatter.java     |    28 +
 .../net/sf/jabref/logic/layout/format/Number.java  |    21 +
 .../net/sf/jabref/logic/layout/format/Ordinal.java |    46 +
 .../sf/jabref/logic/layout/format/RTFChars.java    |   202 +
 .../jabref/logic/layout/format/RemoveBrackets.java |    24 +
 .../layout/format/RemoveBracketsAddComma.java      |    22 +
 .../logic/layout/format/RemoveLatexCommands.java   |    67 +
 .../sf/jabref/logic/layout/format/RemoveTilde.java |    31 +
 .../logic/layout/format/RemoveWhitespace.java      |    29 +
 .../net/sf/jabref/logic/layout/format/Replace.java |    61 +
 .../sf/jabref/logic/layout/format/RisAuthors.java  |    34 +
 .../sf/jabref/logic/layout/format/RisKeywords.java |    28 +
 .../sf/jabref/logic/layout/format/RisMonth.java    |    22 +
 .../sf/jabref/logic/layout/format/ToLowerCase.java |    17 +
 .../sf/jabref/logic/layout/format/ToUpperCase.java |    19 +
 .../sf/jabref/logic/layout/format/WrapContent.java |    46 +
 .../jabref/logic/layout/format/WrapFileLinks.java  |   315 +
 .../sf/jabref/logic/layout/format/XMLChars.java    |   101 +
 .../java/net/sf/jabref/logic/logging/Cache.java    |    62 +
 .../net/sf/jabref/logic/logging/GuiAppender.java   |    46 +
 .../net/sf/jabref/logic/logging/JabRefLogger.java  |    28 +
 .../net/sf/jabref/logic/mods/MODSDatabase.java     |    73 +
 .../java/net/sf/jabref/logic/mods/MODSEntry.java   |   319 +
 .../java/net/sf/jabref/logic/mods/PageNumbers.java |    60 +
 .../java/net/sf/jabref/logic/mods/PersonName.java  |   128 +
 .../net/sf/jabref/logic/msbib/BibTeXConverter.java |   131 +
 .../net/sf/jabref/logic/msbib/MSBibConverter.java  |   132 +
 .../net/sf/jabref/logic/msbib/MSBibDatabase.java   |   118 +
 .../java/net/sf/jabref/logic/msbib/MSBibEntry.java |   335 +
 .../net/sf/jabref/logic/msbib/MSBibEntryType.java  |    30 +
 .../net/sf/jabref/logic/msbib/MSBibMapping.java    |   150 +
 .../sf/jabref/logic/net/ProxyAuthenticator.java    |    22 +
 .../net/sf/jabref/logic/net/ProxyPreferences.java  |   127 +
 .../net/sf/jabref/logic/net/ProxyRegisterer.java   |    23 +
 .../java/net/sf/jabref/logic/net/URLDownload.java  |   178 +
 src/main/java/net/sf/jabref/logic/net/URLUtil.java |    74 +
 .../sf/jabref/logic/openoffice/CitationEntry.java  |    80 +
 .../net/sf/jabref/logic/openoffice/OOBibStyle.java |   919 ++
 .../sf/jabref/logic/openoffice/OOPreFormatter.java |   229 +
 .../net/sf/jabref/logic/openoffice/OOUtil.java     |   287 +
 .../logic/openoffice/OpenOfficeFileSearch.java     |   121 +
 .../logic/openoffice/OpenOfficePreferences.java    |   127 +
 .../sf/jabref/logic/openoffice/StyleLoader.java    |   144 +
 .../logic/openoffice/UndefinedBibtexEntry.java     |    25 +
 .../UndefinedParagraphFormatException.java         |    20 +
 .../logic/protectedterms/ProtectedTermsList.java   |   117 +
 .../logic/protectedterms/ProtectedTermsLoader.java |   175 +
 .../logic/protectedterms/ProtectedTermsParser.java |   104 +
 .../protectedterms/ProtectedTermsPreferences.java  |    77 +
 .../sf/jabref/logic/remote/RemotePreferences.java  |    37 +
 .../net/sf/jabref/logic/remote/RemoteUtil.java     |     8 +
 .../logic/remote/client/RemoteListenerClient.java  |    50 +
 .../jabref/logic/remote/server/MessageHandler.java |     8 +
 .../logic/remote/server/RemoteListenerServer.java  |    65 +
 .../server/RemoteListenerServerLifecycle.java      |    77 +
 .../remote/server/RemoteListenerServerThread.java  |    35 +
 .../sf/jabref/logic/remote/shared/Protocol.java    |    70 +
 .../sf/jabref/logic/search/DatabaseSearcher.java   |    42 +
 .../sf/jabref/logic/search/MatchesHighlighter.java |    54 +
 .../net/sf/jabref/logic/search/SearchMatcher.java  |    10 +
 .../net/sf/jabref/logic/search/SearchQuery.java    |   118 +
 .../logic/search/SearchQueryHighlightListener.java |    22 +
 .../search/SearchQueryHighlightObservable.java     |   116 +
 .../jabref/logic/search/matchers/AndMatcher.java   |    26 +
 .../jabref/logic/search/matchers/MatcherSet.java   |    45 +
 .../jabref/logic/search/matchers/MatcherSets.java  |    19 +
 .../jabref/logic/search/matchers/NotMatcher.java   |    27 +
 .../sf/jabref/logic/search/matchers/OrMatcher.java |    26 +
 .../logic/search/rules/ContainBasedSearchRule.java |    63 +
 .../logic/search/rules/GrammarBasedSearchRule.java |   243 +
 .../logic/search/rules/RegexBasedSearchRule.java   |    67 +
 .../sf/jabref/logic/search/rules/SearchRule.java   |    10 +
 .../sf/jabref/logic/search/rules/SearchRules.java  |    27 +
 .../logic/search/rules/SentenceAnalyzer.java       |    57 +
 .../ContainsAndRegexBasedSearchRuleDescriber.java  |    55 +
 .../describer/GrammarBasedSearchRuleDescriber.java |   105 +
 .../search/rules/describer/SearchDescriber.java    |     8 +
 .../search/rules/describer/SearchDescribers.java   |    35 +
 .../jabref/logic/undo/AddUndoableActionEvent.java  |    13 +
 .../net/sf/jabref/logic/undo/UndoChangeEvent.java  |    55 +
 .../net/sf/jabref/logic/undo/UndoRedoEvent.java    |    13 +
 .../java/net/sf/jabref/logic/util/BuildInfo.java   |    59 +
 src/main/java/net/sf/jabref/logic/util/DOI.java    |   169 +
 .../net/sf/jabref/logic/util/FileExtensions.java   |    67 +
 src/main/java/net/sf/jabref/logic/util/ISBN.java   |    76 +
 src/main/java/net/sf/jabref/logic/util/ISSN.java   |    52 +
 src/main/java/net/sf/jabref/logic/util/OS.java     |    20 +
 .../java/net/sf/jabref/logic/util/TestEntry.java   |    30 +
 .../java/net/sf/jabref/logic/util/UpdateField.java |   147 +
 .../jabref/logic/util/UpdateFieldPreferences.java  |    56 +
 .../java/net/sf/jabref/logic/util/Version.java     |   140 +
 .../sf/jabref/logic/util/date/EasyDateFormat.java  |    63 +
 .../net/sf/jabref/logic/util/io/AutoSaveUtil.java  |    27 +
 .../jabref/logic/util/io/DatabaseFileLookup.java   |    83 +
 .../net/sf/jabref/logic/util/io/FileBasedLock.java |   123 +
 .../net/sf/jabref/logic/util/io/FileFinder.java    |    47 +
 .../net/sf/jabref/logic/util/io/FileHistory.java   |    51 +
 .../sf/jabref/logic/util/io/FileNameCleaner.java   |    52 +
 .../java/net/sf/jabref/logic/util/io/FileUtil.java |   396 +
 .../java/net/sf/jabref/logic/util/io/XMLUtil.java  |   131 +
 .../logic/util/strings/DiffHighlighting.java       |   101 +
 .../util/strings/HTMLUnicodeConversionMaps.java    |   904 ++
 .../logic/util/strings/QuotedStringTokenizer.java  |    69 +
 .../sf/jabref/logic/util/strings/RtfCharMap.java   |   256 +
 .../logic/util/strings/StringLengthComparator.java |    16 +
 .../sf/jabref/logic/util/strings/StringUtil.java   |   676 +
 .../util/strings/UnicodeToReadableCharMap.java     |   241 +
 .../sf/jabref/logic/util/strings/XmlCharsMap.java  |   135 +
 .../xmp/EncryptedPdfsNotSupportedException.java    |     7 +
 .../net/sf/jabref/logic/xmp/XMPPreferences.java    |    37 +
 .../net/sf/jabref/logic/xmp/XMPSchemaBibtex.java   |   324 +
 src/main/java/net/sf/jabref/logic/xmp/XMPUtil.java |  1124 ++
 .../jabref/migrations/FileLinksUpgradeWarning.java |   254 +
 .../jabref/migrations/PreferencesMigrations.java   |   142 +
 .../java/net/sf/jabref/model/DuplicateCheck.java   |   296 +
 src/main/java/net/sf/jabref/model/EntryTypes.java  |   168 +
 src/main/java/net/sf/jabref/model/FieldChange.java |    91 +
 .../bibtexkeypattern/AbstractBibtexKeyPattern.java |   142 +
 .../bibtexkeypattern/DatabaseBibtexKeyPattern.java |    19 +
 .../bibtexkeypattern/GlobalBibtexKeyPattern.java   |    17 +
 .../net/sf/jabref/model/database/BibDatabase.java  |   585 +
 .../sf/jabref/model/database/BibDatabaseMode.java  |    36 +
 .../model/database/BibDatabaseModeDetection.java   |    50 +
 .../net/sf/jabref/model/database/BibDatabases.java |    31 +
 .../sf/jabref/model/database/DatabaseLocation.java |    11 +
 .../jabref/model/database/DuplicationChecker.java  |   102 +
 .../net/sf/jabref/model/database/EntrySorter.java  |    28 +
 .../jabref/model/database/KeyChangeListener.java   |    87 +
 .../model/database/KeyCollisionException.java      |    20 +
 .../java/net/sf/jabref/model/entry/Author.java     |   395 +
 .../java/net/sf/jabref/model/entry/AuthorList.java |   580 +
 .../sf/jabref/model/entry/AuthorListParser.java    |   405 +
 .../java/net/sf/jabref/model/entry/BibEntry.java   |   700 +
 .../sf/jabref/model/entry/BibLatexEntryType.java   |    70 +
 .../sf/jabref/model/entry/BibLatexEntryTypes.java  |   887 ++
 .../net/sf/jabref/model/entry/BibtexEntryType.java |    59 +
 .../sf/jabref/model/entry/BibtexEntryTypes.java    |   287 +
 .../sf/jabref/model/entry/BibtexSingleField.java   |   175 +
 .../net/sf/jabref/model/entry/BibtexString.java    |   169 +
 .../jabref/model/entry/CanonicalBibtexEntry.java   |    55 +
 .../net/sf/jabref/model/entry/CustomEntryType.java |   129 +
 .../net/sf/jabref/model/entry/EntryConverter.java  |    39 +
 .../java/net/sf/jabref/model/entry/EntryType.java  |    73 +
 .../java/net/sf/jabref/model/entry/EntryUtil.java  |    67 +
 .../java/net/sf/jabref/model/entry/FieldName.java  |   136 +
 .../net/sf/jabref/model/entry/FieldProperties.java |    35 +
 .../java/net/sf/jabref/model/entry/FileField.java  |   128 +
 .../sf/jabref/model/entry/IEEETranEntryTypes.java  |   112 +
 .../net/sf/jabref/model/entry/IdGenerator.java     |    32 +
 .../jabref/model/entry/InternalBibtexFields.java   |   502 +
 .../java/net/sf/jabref/model/entry/MonthUtil.java  |   139 +
 .../net/sf/jabref/model/entry/ParsedFileField.java |    73 +
 .../sf/jabref/model/entry/SharedBibEntryData.java  |    37 +
 .../net/sf/jabref/model/entry/SpecialFields.java   |    31 +
 .../net/sf/jabref/model/event/EntryAddedEvent.java |    26 +
 .../sf/jabref/model/event/EntryChangedEvent.java   |    27 +
 .../java/net/sf/jabref/model/event/EntryEvent.java |    39 +
 .../sf/jabref/model/event/EntryRemovedEvent.java   |    28 +
 .../sf/jabref/model/event/FieldChangedEvent.java   |    73 +
 .../java/net/sf/jabref/pdfimport/ImportDialog.java |   203 +
 .../net/sf/jabref/pdfimport/PdfFileFilter.java     |    30 +
 .../java/net/sf/jabref/pdfimport/PdfImporter.java  |   299 +
 .../sf/jabref/preferences/CustomImportList.java    |    77 +
 .../HighlightMatchingGroupPreferences.java         |    39 +
 .../sf/jabref/preferences/JabRefPreferences.java   |  1384 ++
 .../preferences/JabRefPreferencesFilter.java       |   101 +
 .../preferences/LastFocusedTabPreferences.java     |    31 +
 .../sf/jabref/preferences/VersionPreferences.java  |    23 +
 .../sf/jabref/shared/DBMSConnectionProperties.java |    78 +
 .../java/net/sf/jabref/shared/DBMSConnector.java   |    69 +
 .../java/net/sf/jabref/shared/DBMSProcessor.java   |   531 +
 .../net/sf/jabref/shared/DBMSSynchronizer.java     |   370 +
 src/main/java/net/sf/jabref/shared/DBMSType.java   |    71 +
 .../java/net/sf/jabref/shared/MySQLProcessor.java  |    49 +
 .../java/net/sf/jabref/shared/OracleProcessor.java |    56 +
 .../net/sf/jabref/shared/PostgreSQLProcessor.java  |    48 +
 .../jabref/shared/event/ConnectionLostEvent.java   |    22 +
 .../shared/event/SharedEntryNotPresentEvent.java   |    23 +
 .../sf/jabref/shared/event/UpdateRefusedEvent.java |    37 +
 .../exception/DatabaseNotSupportedException.java   |    11 +
 .../shared/exception/OfflineLockException.java     |    28 +
 .../exception/SharedEntryNotPresentException.java  |    21 +
 .../java/net/sf/jabref/specialfields/Printed.java  |    52 +
 .../java/net/sf/jabref/specialfields/Priority.java |    57 +
 .../java/net/sf/jabref/specialfields/Quality.java  |    53 +
 .../java/net/sf/jabref/specialfields/Rank.java     |    50 +
 .../net/sf/jabref/specialfields/ReadStatus.java    |    57 +
 .../net/sf/jabref/specialfields/Relevance.java     |    52 +
 .../net/sf/jabref/specialfields/SpecialField.java  |    88 +
 .../jabref/specialfields/SpecialFieldAction.java   |    74 +
 .../SpecialFieldDatabaseChangeListener.java        |    34 +
 .../jabref/specialfields/SpecialFieldDropDown.java |    97 +
 .../specialfields/SpecialFieldMenuAction.java      |    27 +
 .../specialfields/SpecialFieldUpdateListener.java  |    51 +
 .../sf/jabref/specialfields/SpecialFieldValue.java |   107 +
 .../jabref/specialfields/SpecialFieldsUtils.java   |   174 +
 src/main/java/osx/macadapter/MacAdapter.java       |    99 +
 src/main/resources/build.properties                |     4 +
 .../fonts/materialdesignicons-webfont.ttf          |   Bin 0 -> 222492 bytes
 src/main/resources/icons/jabref.icns               |   Bin 0 -> 126105 bytes
 src/main/resources/icons/jabref.ico                |   Bin 0 -> 35313 bytes
 src/main/resources/images/Icons.properties         |    15 +
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 src/main/resources/images/icons/JabRef-icon.svg    |   171 +
 .../resources/journals/IEEEJournalListCode.txt     |   212 +
 .../resources/journals/IEEEJournalListText.txt     |   269 +
 src/main/resources/journals/journalList.txt        | 15196 +++++++++++++++++++
 src/main/resources/l10n/JabRef_da.properties       |  1773 +++
 src/main/resources/l10n/JabRef_de.properties       |  2484 +++
 src/main/resources/l10n/JabRef_en.properties       |  2305 +++
 src/main/resources/l10n/JabRef_es.properties       |  1674 ++
 src/main/resources/l10n/JabRef_fa.properties       |  2454 +++
 src/main/resources/l10n/JabRef_fr.properties       |  1722 +++
 src/main/resources/l10n/JabRef_in.properties       |  1690 +++
 src/main/resources/l10n/JabRef_it.properties       |  1791 +++
 src/main/resources/l10n/JabRef_ja.properties       |  2431 +++
 src/main/resources/l10n/JabRef_nl.properties       |  2463 +++
 src/main/resources/l10n/JabRef_no.properties       |  2855 ++++
 src/main/resources/l10n/JabRef_pt_BR.properties    |  1687 ++
 src/main/resources/l10n/JabRef_ru.properties       |  2432 +++
 src/main/resources/l10n/JabRef_sv.properties       |  1634 ++
 src/main/resources/l10n/JabRef_tr.properties       |  1707 +++
 src/main/resources/l10n/JabRef_vi.properties       |  2458 +++
 src/main/resources/l10n/JabRef_zh.properties       |  1699 +++
 src/main/resources/l10n/Menu_da.properties         |   121 +
 src/main/resources/l10n/Menu_de.properties         |   219 +
 src/main/resources/l10n/Menu_en.properties         |   133 +
 src/main/resources/l10n/Menu_es.properties         |   148 +
 src/main/resources/l10n/Menu_fa.properties         |   146 +
 src/main/resources/l10n/Menu_fr.properties         |   134 +
 src/main/resources/l10n/Menu_in.properties         |   119 +
 src/main/resources/l10n/Menu_it.properties         |   140 +
 src/main/resources/l10n/Menu_ja.properties         |   147 +
 src/main/resources/l10n/Menu_nl.properties         |   228 +
 src/main/resources/l10n/Menu_no.properties         |   140 +
 src/main/resources/l10n/Menu_pt_BR.properties      |   121 +
 src/main/resources/l10n/Menu_ru.properties         |   144 +
 src/main/resources/l10n/Menu_sv.properties         |   110 +
 src/main/resources/l10n/Menu_tr.properties         |   123 +
 src/main/resources/l10n/Menu_vi.properties         |   146 +
 src/main/resources/l10n/Menu_zh.properties         |   145 +
 src/main/resources/log4j2.xml                      |    19 +
 .../protectedterms/countries_territories.terms     |   287 +
 .../protectedterms/electrical_engineering.terms    |   639 +
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 src/{ => main/resources}/resource/ods/manifest.xml |     0
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 src/{ => main/resources}/resource/ods/settings.xml |     0
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 src/main/resources/resource/openoffice/meta.xml    |     7 +
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 src/main/resources/xjc/bibtexml/bibtexml.xsd       |  1001 ++
 src/main/resources/xjc/medline/bookdoc_160101.xsd  |   261 +
 src/main/resources/xjc/medline/medline.xsd         |   314 +
 .../xjc/medline/nlmmedlinecitationset_160101.xsd   |   861 ++
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 src/manuals/de/JabRef-UserManual_de.tex            |  3201 ----
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 src/test/resources/testbib/special-fields.bib      |    19 +
 src/test/resources/testbib/testdocument.tex        |     8 +
 src/test/resources/testbib/testjabref.bib          |   313 +
 src/test/resources/testbib/testjabref_210as292.bib |   482 +
 src/test/resources/testbib/testjabref_292.bib      |   301 +
 src/test/resources/testbib/utf8-bom.bib            |    42 +
 src/tests/encrypted.pdf                            |    51 -
 src/tests/net/sf/jabref/bibtexFiles/test.bib       |   279 -
 .../net/sf/jabref/imports/CopacImporterTest1.txt   |     9 -
 .../net/sf/jabref/imports/CopacImporterTest2.txt   |    34 -
 src/tests/net/sf/jabref/imports/IEEEImport1.txt    |    60 -
 .../sf/jabref/imports/IsiImporterTestInspec.isi    |   122 -
 .../net/sf/jabref/imports/IsiImporterTestWOS.isi   |   135 -
 .../net/sf/jabref/imports/RisImporterTest1.ris     |    13 -
 src/txt/CHANGELOG                                  |  1246 --
 src/txt/INSTALL                                    |    29 -
 src/txt/README                                     |   102 -
 src/txt/TODO                                       |    28 -
 src/txt/gpl2.txt                                   |   339 -
 src/txt/gpl3.txt                                   |   674 -
 src/txt/lesser.txt                                 |   502 -
 src/windows/nsis/README.txt                        |    44 -
 src/windows/nsis/fileassoc.nsh                     |   119 -
 src/windows/nsis/installer_languages/english.nsh   |    33 -
 src/windows/nsis/installer_languages/french.nsh    |    33 -
 src/windows/nsis/installer_languages/german.nsh    |    33 -
 src/windows/nsis/installer_languages/italian.nsh   |    33 -
 src/windows/nsis/installer_languages/russian.nsh   |    33 -
 src/windows/nsis/installer_languages/spanish.nsh   |    33 -
 src/windows/nsis/setup.nsi                         |   281 -
 syncLang.py                                        |   353 -
 xjc.gradle                                         |    27 +
 2799 files changed, 220930 insertions(+), 234789 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-java/jabref.git



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