[commons-math3] branch master updated (e1abfc0 -> d06cbd3)

Emmanuel Bourg ebourg-guest at moszumanska.debian.org
Mon Jan 11 22:10:33 UTC 2016


This is an automated email from the git hooks/post-receive script.

ebourg-guest pushed a change to branch master
in repository commons-math3.

      from  e1abfc0   prepare changelog
       new  d85b96d   Build with the DH sequencer instead of CDBS
       new  0f658e5   Removed the unused build dependency on ant
      adds  ce59910   Imported Upstream version 3.6
       new  3ed8e07   Merge tag 'upstream/3.6'
       new  d02289f   New upstream release (3.6)
       new  a383a93   Refreshed the patches
       new  d06cbd3   Restored the changes from commons-math3/3.5-2

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 NOTICE.txt                                         |   2 +-
 RELEASE-NOTES.txt                                  | 117 ++-
 build.xml                                          |  25 +-
 checkstyle.xml                                     |  14 +-
 debian/changelog                                   |  15 +
 debian/control                                     |   4 +-
 debian/patches/03_libjs-mathjax.patch              |  10 +-
 debian/rules                                       |  11 +-
 findbugs-exclude-filter.xml                        |  22 +
 pmd-ruleset.xml                                    |  73 ++
 pom.xml                                            |  38 +-
 src/changes/changes.xml                            | 240 ++++++
 .../org/apache/commons/math3/FieldElement.java     |   4 +-
 .../org/apache/commons/math3/RealFieldElement.java |   6 +-
 .../commons/math3/analysis/FunctionUtils.java      |  49 +-
 ...ction.java => RealFieldUnivariateFunction.java} |  29 +-
 .../commons/math3/analysis/UnivariateFunction.java |   8 +-
 .../math3/analysis/differentiation/DSCompiler.java |  14 +-
 .../differentiation/DerivativeStructure.java       |   8 +-
 .../FiniteDifferencesDifferentiator.java           |   7 +-
 .../analysis/differentiation/SparseGradient.java   |   2 +-
 .../math3/analysis/function/StepFunction.java      |   9 +-
 .../BaseAbstractUnivariateIntegrator.java          |  43 +-
 .../IterativeLegendreGaussIntegrator.java          |   5 +-
 .../integration/LegendreGaussIntegrator.java       |   4 +-
 .../analysis/integration/MidPointIntegrator.java   |   4 +-
 .../analysis/integration/RombergIntegrator.java    |   8 +-
 .../analysis/integration/SimpsonIntegrator.java    |   6 +-
 .../analysis/integration/TrapezoidIntegrator.java  |   6 +-
 .../analysis/integration/UnivariateIntegrator.java |  13 +-
 .../integration/gauss/GaussIntegratorFactory.java  |   8 +-
 .../integration/gauss/HermiteRuleFactory.java      |  23 +-
 .../gauss/LegendreHighPrecisionRuleFactory.java    |   2 +-
 .../integration/gauss/LegendreRuleFactory.java     |   2 +-
 .../BicubicInterpolatingFunction.java              |   2 +-
 .../interpolation/BicubicInterpolator.java         |   1 +
 .../BicubicSplineInterpolatingFunction.java        |  10 +-
 .../DividedDifferenceInterpolator.java             |   9 +-
 .../interpolation/InterpolatingMicrosphere.java    | 385 +++++++++
 .../interpolation/InterpolatingMicrosphere2D.java  |  87 ++
 .../analysis/interpolation/LoessInterpolator.java  |  30 +-
 .../MicrosphereInterpolatingFunction.java          |   3 +
 .../interpolation/MicrosphereInterpolator.java     |   3 +
 .../MicrosphereProjectionInterpolator.java         | 164 ++++
 .../analysis/interpolation/SplineInterpolator.java |  12 +-
 .../TricubicInterpolatingFunction.java             |  12 +-
 .../interpolation/TricubicInterpolator.java        |   1 +
 .../TricubicSplineInterpolatingFunction.java       |  12 +-
 .../interpolation/TricubicSplineInterpolator.java  |   2 +-
 .../UnivariatePeriodicInterpolator.java            |   1 +
 .../analysis/polynomials/PolynomialFunction.java   |  18 +-
 .../polynomials/PolynomialSplineFunction.java      |  12 +-
 .../analysis/polynomials/PolynomialsUtils.java     | 108 ++-
 .../solvers/BaseAbstractUnivariateSolver.java      |  14 +-
 .../BracketedRealFieldUnivariateSolver.java        | 142 +++
 .../solvers/BracketingNthOrderBrentSolver.java     |   7 +-
 .../math3/analysis/solvers/BrentSolver.java        |  15 +-
 .../FieldBracketingNthOrderBrentSolver.java}       | 156 ++--
 .../math3/analysis/solvers/LaguerreSolver.java     |  28 +-
 .../math3/analysis/solvers/MullerSolver.java       |   6 +-
 .../math3/analysis/solvers/MullerSolver2.java      |  10 +-
 .../analysis/solvers/UnivariateSolverUtils.java    |  24 +-
 .../org/apache/commons/math3/complex/Complex.java  | 154 ++--
 .../dfp/BracketingNthOrderBrentSolverDFP.java      | 327 +------
 .../java/org/apache/commons/math3/dfp/Dfp.java     |   2 +-
 .../java/org/apache/commons/math3/dfp/DfpMath.java |   5 -
 .../commons/math3/dfp/UnivariateDfpFunction.java   |   3 +-
 .../distribution/AbstractIntegerDistribution.java  |   4 +-
 .../distribution/AbstractRealDistribution.java     |   6 +-
 .../math3/distribution/BetaDistribution.java       | 137 +++
 .../distribution/ConstantRealDistribution.java     |   1 +
 .../math3/distribution/EnumeratedDistribution.java |   8 +-
 .../EnumeratedIntegerDistribution.java             |  60 +-
 .../distribution/EnumeratedRealDistribution.java   |  66 +-
 .../math3/distribution/GeometricDistribution.java  |  50 +-
 .../math3/distribution/GumbelDistribution.java     |   1 +
 .../math3/distribution/LaplaceDistribution.java    |   1 +
 .../math3/distribution/LogisticDistribution.java   |   1 +
 .../math3/distribution/NakagamiDistribution.java   |   1 +
 .../math3/distribution/NormalDistribution.java     |   2 +-
 .../math3/distribution/TriangularDistribution.java |   1 +
 .../distribution/UniformRealDistribution.java      |   1 +
 .../math3/distribution/ZipfDistribution.java       | 232 ++++-
 .../math3/exception/util/ExceptionContext.java     |   8 +-
 .../math3/exception/util/LocalizedFormats.java     |   4 +-
 .../commons/math3/fitting/AbstractCurveFitter.java |   1 +
 .../apache/commons/math3/fitting/CurveFitter.java  |   3 +-
 .../commons/math3/fitting/GaussianCurveFitter.java |  18 +-
 .../commons/math3/fitting/GaussianFitter.java      |  18 +-
 .../fitting/leastsquares/GaussNewtonOptimizer.java |  15 +-
 .../fitting/leastsquares/LeastSquaresFactory.java  |   4 +
 .../apache/commons/math3/fraction/BigFraction.java | 103 ++-
 .../apache/commons/math3/fraction/Fraction.java    |   4 +-
 .../math3/genetics/AbstractListChromosome.java     |   1 +
 .../commons/math3/genetics/BinaryChromosome.java   |   1 +
 .../commons/math3/genetics/ChromosomePair.java     |   1 +
 .../commons/math3/genetics/ListPopulation.java     |   2 +-
 .../apache/commons/math3/genetics/RandomKey.java   |   1 +
 .../math3/genetics/TournamentSelection.java        |   1 +
 .../math3/geometry/euclidean/oned/Interval.java    |   6 +
 .../geometry/euclidean/oned/IntervalsSet.java      |   2 +-
 .../geometry/euclidean/oned/SubOrientedPoint.java  |  18 +-
 .../geometry/euclidean/threed/FieldRotation.java   | 948 ++++++++++++++++-----
 .../euclidean/threed/OutlineExtractor.java         |   2 +-
 .../geometry/euclidean/threed/PolyhedronsSet.java  |  25 +-
 .../math3/geometry/euclidean/threed/Rotation.java  | 905 ++++++++++++++------
 .../euclidean/threed/RotationConvention.java       |  79 ++
 .../euclidean/threed/SphericalCoordinates.java     |   2 +-
 .../math3/geometry/euclidean/threed/SubPlane.java  |  52 +-
 .../math3/geometry/euclidean/twod/Line.java        |  83 +-
 .../math3/geometry/euclidean/twod/NestedLoops.java |   5 +-
 .../math3/geometry/euclidean/twod/PolygonsSet.java |  14 +-
 .../math3/geometry/euclidean/twod/SubLine.java     |  33 +-
 .../euclidean/twod/hull/MonotoneChain.java         |   2 +
 .../geometry/partitioning/AbstractRegion.java      |  41 +-
 .../partitioning/AbstractSubHyperplane.java        |   5 +-
 .../math3/geometry/partitioning/BSPTree.java       |   9 +-
 .../geometry/partitioning/BoundaryProjector.java   |   4 +-
 .../geometry/partitioning/BoundarySizeVisitor.java |   2 +-
 .../geometry/partitioning/Characterization.java    |   6 +-
 .../math3/geometry/partitioning/InsideFinder.java  |  10 +-
 .../math3/geometry/partitioning/Region.java        |   5 +-
 .../math3/geometry/partitioning/RegionFactory.java |  33 +-
 .../math3/geometry/partitioning/SubHyperplane.java |  26 +-
 .../geometry/partitioning/utilities/AVLTree.java   |   2 +-
 .../math3/geometry/spherical/oned/ArcsSet.java     |  59 +-
 .../geometry/spherical/oned/SubLimitAngle.java     |   8 -
 .../math3/geometry/spherical/twod/Circle.java      |   2 +-
 .../geometry/spherical/twod/EdgesBuilder.java      |   2 +-
 .../spherical/twod/PropertiesComputer.java         |   4 +-
 .../spherical/twod/SphericalPolygonsSet.java       |   6 +-
 .../math3/geometry/spherical/twod/SubCircle.java   |  28 +-
 .../math3/linear/BiDiagonalTransformer.java        |   2 +-
 .../commons/math3/linear/FieldLUDecomposition.java |   4 +-
 .../apache/commons/math3/linear/FieldMatrix.java   |  13 +-
 .../math3/linear/HessenbergTransformer.java        |   2 +-
 .../apache/commons/math3/linear/MatrixUtils.java   |   4 +-
 .../commons/math3/linear/SchurTransformer.java     |   2 +-
 .../org/apache/commons/math3/linear/SymmLQ.java    |   2 +-
 .../math3/linear/TriDiagonalTransformer.java       |   2 +-
 .../ml/clustering/KMeansPlusPlusClusterer.java     |   2 +-
 .../evaluation/SumOfClusterVariances.java          |   1 +
 .../math3/ml/distance/CanberraDistance.java        |   6 +-
 .../math3/ml/distance/ChebyshevDistance.java       |   4 +-
 .../commons/math3/ml/distance/DistanceMeasure.java |   5 +-
 .../math3/ml/distance/EarthMoversDistance.java     |   6 +-
 .../math3/ml/distance/EuclideanDistance.java       |   4 +-
 .../math3/ml/distance/ManhattanDistance.java       |   4 +-
 .../commons/math3/ml/neuralnet/MapUtils.java       |  83 +-
 .../apache/commons/math3/ml/neuralnet/Network.java |  25 +
 .../apache/commons/math3/ml/neuralnet/Neuron.java  |  63 +-
 .../ml/neuralnet/sofm/KohonenUpdateAction.java     |  47 +-
 .../ml/neuralnet/twod/NeuronSquareMesh2D.java      | 195 ++++-
 .../math3/ml/neuralnet/twod/util/HitHistogram.java |  83 ++
 .../ml/neuralnet/twod/util/LocationFinder.java     | 105 +++
 .../twod/util/MapDataVisualization.java}           |  28 +-
 .../ml/neuralnet/twod/util/MapVisualization.java}  |  33 +-
 .../ml/neuralnet/twod/util/QuantizationError.java  |  76 ++
 .../neuralnet/twod/util/SmoothedDataHistogram.java |  97 +++
 .../twod/util/TopographicErrorHistogram.java       |  91 ++
 .../neuralnet/twod/util/UnifiedDistanceMatrix.java | 209 +++++
 .../ml/neuralnet/twod/util/package-info.java}      |  16 +-
 .../commons/math3/ode/AbstractFieldIntegrator.java | 453 ++++++++++
 .../commons/math3/ode/AbstractIntegrator.java      |  32 +-
 .../math3/ode/ContinuousOutputFieldModel.java      | 345 ++++++++
 .../commons/math3/ode/ExpandableStatefulODE.java   |   2 +-
 .../commons/math3/ode/FieldEquationsMapper.java    | 203 +++++
 .../commons/math3/ode/FieldExpandableODE.java      | 147 ++++
 .../apache/commons/math3/ode/FieldODEState.java    | 139 +++
 .../math3/ode/FieldODEStateAndDerivative.java      |  82 ++
 .../commons/math3/ode/FieldSecondaryEquations.java |  75 ++
 .../ode/FirstOrderFieldDifferentialEquations.java  |  73 ++
 .../math3/ode/FirstOrderFieldIntegrator.java       | 188 ++++
 .../apache/commons/math3/ode/JacobianMatrices.java |   4 +-
 ...tegrator.java => MultistepFieldIntegrator.java} | 255 +++---
 .../commons/math3/ode/MultistepIntegrator.java     |  38 +-
 .../commons/math3/ode/ParameterConfiguration.java  |   2 +-
 .../math3/ode/ParameterJacobianWrapper.java        |   6 +-
 .../commons/math3/ode/ParameterizedWrapper.java    |   2 +-
 .../math3/ode/UnknownParameterException.java       |   2 +-
 .../apache/commons/math3/ode/events/Action.java    |  56 ++
 .../commons/math3/ode/events/EventFilter.java      |  26 +-
 .../commons/math3/ode/events/EventHandler.java     |   2 +-
 .../commons/math3/ode/events/EventState.java       |  18 +-
 .../math3/ode/events/FieldEventHandler.java        | 180 ++++
 .../commons/math3/ode/events/FieldEventState.java  | 344 ++++++++
 ...tor.java => AdamsBashforthFieldIntegrator.java} | 251 +++---
 .../ode/nonstiff/AdamsBashforthIntegrator.java     | 123 ++-
 .../math3/ode/nonstiff/AdamsFieldIntegrator.java   | 145 ++++
 .../ode/nonstiff/AdamsFieldStepInterpolator.java   | 189 ++++
 ...rator.java => AdamsMoultonFieldIntegrator.java} | 249 +++---
 .../math3/ode/nonstiff/AdamsMoultonIntegrator.java |  16 +-
 ...er.java => AdamsNordsieckFieldTransformer.java} | 238 +++---
 .../ode/nonstiff/AdamsNordsieckTransformer.java    | 100 ++-
 .../nonstiff/AdaptiveStepsizeFieldIntegrator.java  | 366 ++++++++
 .../ClassicalRungeKuttaFieldIntegrator.java        | 111 +++
 .../ClassicalRungeKuttaFieldStepInterpolator.java  | 136 +++
 .../ClassicalRungeKuttaStepInterpolator.java       |   5 +-
 .../nonstiff/DormandPrince54FieldIntegrator.java   | 232 +++++
 .../DormandPrince54FieldStepInterpolator.java      | 249 ++++++
 .../nonstiff/DormandPrince54StepInterpolator.java  |   5 +-
 .../nonstiff/DormandPrince853FieldIntegrator.java  | 454 ++++++++++
 .../DormandPrince853FieldStepInterpolator.java     | 302 +++++++
 .../nonstiff/DormandPrince853StepInterpolator.java |   5 +-
 .../EmbeddedRungeKuttaFieldIntegrator.java         | 385 +++++++++
 .../math3/ode/nonstiff/EulerFieldIntegrator.java   |  96 +++
 .../ode/nonstiff/EulerFieldStepInterpolator.java   | 108 +++
 .../math3/ode/nonstiff/EulerStepInterpolator.java  |   5 +-
 .../ode/nonstiff/FieldButcherArrayProvider.java    |  46 +
 .../math3/ode/nonstiff/GillFieldIntegrator.java    | 121 +++
 .../ode/nonstiff/GillFieldStepInterpolator.java    | 148 ++++
 .../math3/ode/nonstiff/GillStepInterpolator.java   |   5 +-
 .../GraggBulirschStoerStepInterpolator.java        |  18 +-
 .../ode/nonstiff/HighamHall54FieldIntegrator.java  | 205 +++++
 .../HighamHall54FieldStepInterpolator.java         | 116 +++
 .../ode/nonstiff/HighamHall54StepInterpolator.java |   5 +-
 .../math3/ode/nonstiff/LutherFieldIntegrator.java  | 146 ++++
 .../ode/nonstiff/LutherFieldStepInterpolator.java  | 224 +++++
 .../math3/ode/nonstiff/LutherStepInterpolator.java |   5 +-
 .../ode/nonstiff/MidpointFieldIntegrator.java      |  96 +++
 .../nonstiff/MidpointFieldStepInterpolator.java    | 118 +++
 .../ode/nonstiff/MidpointStepInterpolator.java     |   5 +-
 .../ode/nonstiff/RungeKuttaFieldIntegrator.java    | 273 ++++++
 .../nonstiff/RungeKuttaFieldStepInterpolator.java  | 143 ++++
 .../ode/nonstiff/RungeKuttaStepInterpolator.java   |   2 +-
 .../ode/nonstiff/ThreeEighthesFieldIntegrator.java | 110 +++
 .../ThreeEighthesFieldStepInterpolator.java        | 139 +++
 .../nonstiff/ThreeEighthesStepInterpolator.java    |   5 +-
 .../sampling/AbstractFieldStepInterpolator.java    | 171 ++++
 .../math3/ode/sampling/FieldFixedStepHandler.java  |  69 ++
 .../math3/ode/sampling/FieldStepHandler.java       |  75 ++
 .../math3/ode/sampling/FieldStepInterpolator.java  |  76 ++
 .../math3/ode/sampling/FieldStepNormalizer.java    | 273 ++++++
 .../math3/ode/sampling/StepNormalizerBounds.java   |   3 +-
 .../math3/ode/sampling/StepNormalizerMode.java     |   1 +
 .../apache/commons/math3/optim/PointValuePair.java |   2 +-
 .../commons/math3/optim/PointVectorValuePair.java  |   2 +-
 .../math3/optim/linear/LinearConstraint.java       |   2 +
 .../optim/linear/LinearObjectiveFunction.java      |   2 +
 .../commons/math3/optim/linear/Relationship.java   |   3 +-
 .../commons/math3/optim/linear/SimplexTableau.java |   2 +
 .../math3/optim/nonlinear/scalar/LineSearch.java   |   1 +
 .../scalar/MultiStartMultivariateOptimizer.java    |   1 +
 .../scalar/MultivariateFunctionMappingAdapter.java |   6 +-
 .../NonLinearConjugateGradientOptimizer.java       |   2 +-
 .../nonlinear/scalar/noderiv/BOBYQAOptimizer.java  |  25 +-
 .../nonlinear/scalar/noderiv/CMAESOptimizer.java   |   4 +-
 .../nonlinear/scalar/noderiv/SimplexOptimizer.java |   2 +
 .../MultiStartMultivariateVectorOptimizer.java     |   3 +
 .../math3/optim/univariate/BracketFinder.java      |  14 +-
 .../univariate/MultiStartUnivariateOptimizer.java  |   1 +
 .../BaseMultivariateMultiStartOptimizer.java       |   1 +
 .../BaseMultivariateVectorMultiStartOptimizer.java |   1 +
 .../commons/math3/optimization/PointValuePair.java |   2 +-
 .../math3/optimization/PointVectorValuePair.java   |   2 +-
 .../math3/optimization/direct/BOBYQAOptimizer.java |  25 +-
 .../math3/optimization/direct/CMAESOptimizer.java  |   2 +-
 .../direct/MultivariateFunctionMappingAdapter.java |   8 +-
 .../math3/optimization/direct/PowellOptimizer.java |   1 +
 .../optimization/direct/SimplexOptimizer.java      |   2 +
 .../math3/optimization/fitting/CurveFitter.java    |   5 +-
 .../math3/optimization/fitting/GaussianFitter.java |  18 +-
 .../NonLinearConjugateGradientOptimizer.java       |   2 +-
 .../optimization/linear/LinearConstraint.java      |   2 +
 .../linear/LinearObjectiveFunction.java            |   2 +
 .../math3/optimization/linear/Relationship.java    |   3 +-
 .../math3/optimization/linear/SimplexTableau.java  |   2 +
 .../univariate/UnivariateMultiStartOptimizer.java  |   1 +
 .../commons/math3/random/BitsStreamGenerator.java  | 111 ++-
 .../math3/random/EmpiricalDistribution.java        |  17 +-
 .../commons/math3/random/JDKRandomGenerator.java   |  17 +
 .../org/apache/commons/math3/special/Beta.java     |   2 +
 .../org/apache/commons/math3/special/Gamma.java    |  12 +-
 .../org/apache/commons/math3/stat/Frequency.java   |   4 +-
 .../stat/clustering/KMeansPlusPlusClusterer.java   |   2 +-
 .../stat/correlation/KendallsCorrelation.java      |   3 +-
 .../stat/correlation/SpearmansCorrelation.java     |   3 +
 .../correlation/StorelessBivariateCovariance.java  |   4 +-
 .../descriptive/AggregateSummaryStatistics.java    |  14 +-
 .../stat/descriptive/DescriptiveStatistics.java    |  17 +-
 .../math3/stat/descriptive/moment/FirstMoment.java |   4 +-
 .../stat/descriptive/moment/FourthMoment.java      |   4 +-
 .../math3/stat/descriptive/moment/Skewness.java    |   5 +
 .../math3/stat/descriptive/moment/ThirdMoment.java |   4 +-
 .../stat/descriptive/rank/PSquarePercentile.java   |   3 +-
 .../math3/stat/descriptive/rank/Percentile.java    |  38 +-
 .../stat/inference/KolmogorovSmirnovTest.java      | 536 +++++++++---
 .../commons/math3/stat/ranking/NaturalRanking.java |   2 +-
 .../math3/transform/FastFourierTransformer.java    |   3 +-
 .../apache/commons/math3/util/Combinations.java    |   9 +-
 .../commons/math3/util/CombinatoricsUtils.java     |  24 +-
 .../org/apache/commons/math3/util/FastMath.java    | 466 +++++-----
 .../org/apache/commons/math3/util/Incrementor.java |  59 ++
 .../apache/commons/math3/util/IntegerSequence.java | 362 ++++++++
 .../commons/math3/util/IterationManager.java       |  32 +-
 .../org/apache/commons/math3/util/MathArrays.java  | 363 +++++---
 .../org/apache/commons/math3/util/MathUtils.java   |  23 +
 .../java/org/apache/commons/math3/util/Pair.java   |   1 +
 .../org/apache/commons/math3/util/Precision.java   |  39 +-
 .../commons/math3/util/ResizableDoubleArray.java   |  24 +-
 .../exception/util/LocalizedFormats_fr.properties  |   2 +
 src/site/site.xml                                  |   8 +-
 src/site/xdoc/download_math.xml                    |  26 +-
 src/site/xdoc/userguide/analysis.xml               |  44 +-
 src/site/xdoc/userguide/exceptions.xml             |  10 +-
 src/site/xdoc/userguide/filter.xml                 |   6 +-
 src/site/xdoc/userguide/fitting.xml                |   8 +-
 src/site/xdoc/userguide/genetics.xml               |   8 +-
 src/site/xdoc/userguide/geometry.xml               | 124 ++-
 src/site/xdoc/userguide/index.xml                  |  65 +-
 src/site/xdoc/userguide/leastsquares.xml           | 366 ++++++++
 src/site/xdoc/userguide/ode.xml                    | 275 +++---
 src/site/xdoc/userguide/optimization.xml           |   7 +-
 src/site/xdoc/userguide/stat.xml                   |   9 +-
 src/test/R/ChiSquareDistributionTestCases.R        |   8 +-
 src/test/R/FDistributionTestCases.R                |   8 +-
 src/test/R/GammaDistributionTestCases.R            |   8 +-
 .../R/KolmogorovSmirnovDistributionTestCases.R     |   6 +-
 src/test/R/KolmogorovSmirnovTestCases.R            |  62 +-
 src/test/R/LevyDistributionTestCases.R             |   5 +-
 src/test/R/README.txt                              |  72 +-
 src/test/R/TDistributionTestCases.R                |   8 +-
 src/test/R/TTestCases                              |  20 +-
 src/test/R/WeibullDistributionTestCases.R          |   8 +-
 src/test/R/anovaTestCases                          |   8 +-
 src/test/R/binomialTestCases                       |   8 +-
 src/test/R/cauchyTestCases.R                       |   6 +-
 src/test/R/chiSquareTestCases                      |  20 +-
 src/test/R/correlationTestCases                    |  16 +-
 src/test/R/covarianceTestCases                     |  16 +-
 src/test/R/descriptiveTestCases                    |   6 +-
 src/test/R/exponentialTestCases                    |   8 +-
 src/test/R/geometricTestCases                      |  10 +-
 src/test/R/hypergeometricTestCases                 |  12 +-
 src/test/R/multipleOLSRegressionTestCases          |  32 +-
 src/test/R/nakagamiTestCases.R                     |   6 +-
 src/test/R/normalTestCases                         |   8 +-
 src/test/R/paretoTestCases                         |  11 +-
 src/test/R/pascalTestCases                         |   6 +-
 src/test/R/poissonTestCases                        |  12 +-
 src/test/R/regressionTestCases                     |  24 +-
 src/test/R/testAll                                 |  14 +-
 src/test/R/testFunctions                           |   6 +-
 src/test/R/zipfTestCases                           |   6 +-
 .../org/apache/commons/math3/PerfTestUtils.java    |   2 +
 .../commons/math3/analysis/FunctionUtilsTest.java  |   8 +-
 .../differentiation/DerivativeStructureTest.java   |  16 +-
 .../FiniteDifferencesDifferentiatorTest.java       |  14 +-
 .../differentiation/GradientFunctionTest.java      |   4 +-
 .../differentiation/JacobianFunctionTest.java      |   4 +-
 .../differentiation/SparseGradientTest.java        |   4 +-
 .../math3/analysis/function/GaussianTest.java      |   2 +-
 .../math3/analysis/function/LogisticTest.java      |   8 +-
 .../math3/analysis/function/SigmoidTest.java       |   2 +-
 .../math3/analysis/function/StepFunctionTest.java  |   8 +-
 .../integration/MidPointIntegratorTest.java        |   4 +-
 .../BicubicInterpolatingFunctionTest.java          |   1 -
 .../BicubicSplineInterpolatingFunctionTest.java    |  21 +-
 .../BicubicSplineInterpolatorTest.java             |   8 +-
 .../interpolation/MicrosphereInterpolatorTest.java |   3 +
 .../MicrosphereProjectionInterpolatorTest.java     | 148 ++++
 .../PiecewiseBicubicSplineInterpolatorTest.java    |   2 -
 ...ingPolynomialBicubicSplineInterpolatorTest.java |  10 +-
 .../TricubicInterpolatingFunctionTest.java         |   4 +-
 .../interpolation/TricubicInterpolatorTest.java    |   1 -
 .../TricubicSplineInterpolatingFunctionTest.java   |  18 +-
 .../TricubicSplineInterpolatorTest.java            |  14 +-
 .../polynomials/PolynomialSplineFunctionTest.java  |   2 +-
 .../analysis/polynomials/PolynomialsUtilsTest.java |   2 +-
 .../FieldBracketingNthOrderBrentSolverTest.java}   |  46 +-
 .../apache/commons/math3/complex/ComplexTest.java  |  58 +-
 .../commons/math3/complex/QuaternionTest.java      |  15 +-
 .../dfp/BracketingNthOrderBrentSolverDFPTest.java  |   1 +
 .../org/apache/commons/math3/dfp/DfpDecTest.java   |   6 +-
 .../org/apache/commons/math3/dfp/DfpMathTest.java  | 122 +--
 .../java/org/apache/commons/math3/dfp/DfpTest.java |  10 +
 .../math3/distribution/BetaDistributionTest.java   |  73 ++
 .../distribution/BinomialDistributionTest.java     |   4 +-
 .../distribution/ConstantRealDistributionTest.java |   4 +-
 .../EnumeratedIntegerDistributionTest.java         |   9 +
 .../EnumeratedRealDistributionTest.java            |  14 +-
 .../distribution/ExponentialDistributionTest.java  |   1 +
 .../math3/distribution/GammaDistributionTest.java  |   3 +-
 .../distribution/GeometricDistributionTest.java    |   6 +-
 .../HypergeometricDistributionTest.java            |  14 +-
 .../KolmogorovSmirnovDistributionTest.java         |   8 +-
 .../math3/distribution/LevyDistributionTest.java   |   2 +-
 .../MultivariateNormalDistributionTest.java        |   2 +-
 .../math3/distribution/NormalDistributionTest.java |  10 +
 .../distribution/PoissonDistributionTest.java      |   2 +-
 .../distribution/RealDistributionAbstractTest.java |  18 +-
 .../math3/distribution/TDistributionTest.java      |   4 +-
 .../distribution/UniformRealDistributionTest.java  |  10 +-
 .../math3/distribution/ZipfDistributionTest.java   | 139 ++-
 ...teNormalMixtureExpectationMaximizationTest.java |  10 +-
 .../exception/DimensionMismatchExceptionTest.java  |   2 +-
 .../exception/MaxCountExceededExceptionTest.java   |   2 +-
 .../NonMonotonicSequenceExceptionTest.java         |   2 +-
 .../math3/exception/NotPositiveExceptionTest.java  |   2 +-
 .../NotStrictlyPositiveExceptionTest.java          |   2 +-
 .../exception/NumberIsTooLargeExceptionTest.java   |   2 +-
 .../exception/NumberIsTooSmallExceptionTest.java   |   2 +-
 .../math3/exception/OutOfRangeExceptionTest.java   |   2 +-
 .../exception/TooManyEvaluationsExceptionTest.java |   2 +-
 .../commons/math3/exception/util/ArgUtilsTest.java |   2 +-
 .../math3/exception/util/ExceptionContextTest.java |   2 +-
 .../math3/exception/util/LocalizedFormatsTest.java |   2 +-
 .../commons/math3/filter/KalmanFilterTest.java     |  50 +-
 .../math3/fitting/GaussianCurveFitterTest.java     |  16 +-
 .../commons/math3/fitting/GaussianFitterTest.java  |  16 +-
 .../math3/fitting/HarmonicCurveFitterTest.java     |   2 +-
 .../math3/fitting/PolynomialCurveFitterTest.java   |   2 +-
 .../math3/fitting/SimpleCurveFitterTest.java       |   5 +-
 .../math3/fitting/leastsquares/CircleProblem.java  |   2 +-
 .../fitting/leastsquares/CircleVectorial.java      |   2 +-
 .../math3/fitting/leastsquares/MinpackTest.java    |   4 +-
 .../leastsquares/RandomCirclePointGenerator.java   |   3 +-
 .../RandomStraightLinePointGenerator.java          |   3 +-
 .../commons/math3/fraction/BigFractionTest.java    |   4 +-
 .../commons/math3/fraction/FractionTest.java       |  11 +
 .../commons/math3/genetics/CycleCrossoverTest.java |   4 +-
 .../math3/genetics/DummyListChromosome.java        |   2 +-
 .../genetics/ElitisticListPopulationTest.java      |  10 +-
 .../commons/math3/genetics/ListPopulationTest.java |  26 +-
 .../math3/genetics/NPointCrossoverTest.java        |  16 +-
 .../math3/genetics/OrderedCrossoverTest.java       |   6 +-
 .../commons/math3/genetics/RandomKeyTest.java      |   2 +-
 .../math3/genetics/UniformCrossoverTest.java       |  14 +-
 .../geometry/euclidean/oned/IntervalTest.java      |   6 +
 .../euclidean/threed/FieldRotationDSTest.java      | 556 ++++++++++--
 .../euclidean/threed/FieldRotationDfpTest.java     | 434 ++++++++--
 .../euclidean/threed/FieldVector3DTest.java        |   8 +-
 .../math3/geometry/euclidean/threed/LineTest.java  |   2 +-
 .../math3/geometry/euclidean/threed/PlaneTest.java |   6 +-
 .../euclidean/threed/PolyhedronsSetTest.java       |  28 +-
 .../geometry/euclidean/threed/RotationTest.java    | 360 +++++++-
 .../euclidean/threed/SphereGeneratorTest.java      |   2 +-
 .../euclidean/threed/SphericalCoordinatesTest.java |   2 +-
 .../geometry/euclidean/threed/SubLineTest.java     |   2 +-
 .../geometry/euclidean/threed/Vector3DTest.java    |   8 +-
 .../geometry/euclidean/twod/DiskGeneratorTest.java |   2 +-
 .../math3/geometry/euclidean/twod/LineTest.java    |   6 +-
 .../geometry/euclidean/twod/PolygonsSetTest.java   |  26 +-
 .../geometry/euclidean/twod/Vector2DTest.java      |   6 +-
 .../hull/ConvexHullGenerator2DAbstractTest.java    |  18 +-
 .../math3/geometry/partitioning/RegionDumper.java  |   2 +-
 .../math3/geometry/partitioning/RegionParser.java  |   2 +-
 .../math3/geometry/spherical/oned/ArcsSetTest.java |  72 +-
 .../math3/geometry/spherical/twod/CircleTest.java  |   8 +-
 .../spherical/twod/SphericalPolygonsSetTest.java   |  22 +-
 .../geometry/spherical/twod/SubCircleTest.java     |  33 +-
 .../math3/linear/Array2DRowRealMatrixTest.java     |   2 +-
 .../commons/math3/linear/DiagonalMatrixTest.java   |   6 +-
 .../math3/linear/EigenDecompositionTest.java       |  20 +-
 .../math3/linear/HessenbergTransformerTest.java    |  10 +-
 .../MatrixDimensionMismatchExceptionTest.java      |   2 +-
 .../commons/math3/linear/MatrixUtilsTest.java      |  16 +-
 .../commons/math3/linear/QRDecompositionTest.java  |   2 +-
 .../commons/math3/linear/RRQRSolverTest.java       |   4 +-
 .../RectangularCholeskyDecompositionTest.java      |   2 +-
 .../commons/math3/linear/SchurTransformerTest.java |   6 +-
 .../math3/ml/clustering/DBSCANClustererTest.java   |  10 +-
 .../ml/clustering/KMeansPlusPlusClustererTest.java |  12 +-
 .../MultiKMeansPlusPlusClustererTest.java          |   2 +-
 .../evaluation/SumOfClusterVariancesTest.java      |   4 +-
 .../commons/math3/ml/neuralnet/MapUtilsTest.java   |  18 +
 .../commons/math3/ml/neuralnet/NetworkTest.java    |  41 +
 .../commons/math3/ml/neuralnet/NeuronTest.java     |  26 +
 .../ml/neuralnet/OffsetFeatureInitializer.java     |   2 +-
 .../ml/neuralnet/sofm/KohonenTrainingTaskTest.java |  23 +-
 .../neuralnet/sofm/TravellingSalesmanSolver.java   |  60 +-
 .../ml/neuralnet/twod/NeuronSquareMesh2DTest.java  | 208 ++++-
 .../ml/neuralnet/twod/util/LocationFinderTest.java |  69 ++
 .../math3/ode/ContinuousOutputFieldModelTest.java  | 219 +++++
 .../commons/math3/ode/FieldExpandableODETest.java  | 344 ++++++++
 .../commons/math3/ode/JacobianMatricesTest.java    |  27 +-
 .../commons/math3/ode/TestFieldProblem1.java       |  79 ++
 .../commons/math3/ode/TestFieldProblem2.java       |  78 ++
 .../commons/math3/ode/TestFieldProblem3.java       | 124 +++
 .../commons/math3/ode/TestFieldProblem4.java       | 160 ++++
 ...tProblemFactory.java => TestFieldProblem5.java} |  41 +-
 .../{TestProblem6.java => TestFieldProblem6.java}  |  66 +-
 .../math3/ode/TestFieldProblemAbstract.java        | 201 +++++
 .../commons/math3/ode/TestFieldProblemHandler.java | 154 ++++
 .../org/apache/commons/math3/ode/TestProblem1.java |  23 +-
 .../org/apache/commons/math3/ode/TestProblem2.java |  19 +-
 .../org/apache/commons/math3/ode/TestProblem3.java |  16 -
 .../org/apache/commons/math3/ode/TestProblem4.java |  16 -
 .../org/apache/commons/math3/ode/TestProblem5.java |  15 +-
 .../org/apache/commons/math3/ode/TestProblem6.java |  19 +-
 .../commons/math3/ode/TestProblemAbstract.java     |  39 +-
 .../commons/math3/ode/TestProblemHandler.java      |  40 +-
 .../commons/math3/ode/events/EventStateTest.java   |  86 +-
 .../AdamsBashforthFieldIntegratorTest.java         |  78 ++
 .../ode/nonstiff/AdamsBashforthIntegratorTest.java | 161 +++-
 .../nonstiff/AdamsFieldIntegratorAbstractTest.java | 260 ++++++
 .../nonstiff/AdamsMoultonFieldIntegratorTest.java  |  78 ++
 .../ode/nonstiff/AdamsMoultonIntegratorTest.java   | 123 ++-
 .../nonstiff/AdamsNordsieckTransformerTest.java    | 120 +++
 ...lassicalRungKuttaFieldStepInterpolatorTest.java |  63 ++
 .../ClassicalRungeKuttaFieldIntegratorTest.java    | 103 +++
 .../ClassicalRungeKuttaIntegratorTest.java         |  11 +-
 .../ClassicalRungeKuttaStepInterpolatorTest.java   |   2 +-
 .../DormandPrince54FieldIntegratorTest.java        |  97 +++
 .../DormandPrince54FieldStepInterpolatorTest.java  |  63 ++
 .../DormandPrince54StepInterpolatorTest.java       |   2 +-
 .../DormandPrince853FieldIntegratorTest.java       |  97 +++
 .../DormandPrince853FieldStepInterpolatorTest.java |  63 ++
 .../DormandPrince853StepInterpolatorTest.java      |   2 +-
 ...eddedRungeKuttaFieldIntegratorAbstractTest.java | 600 +++++++++++++
 .../ode/nonstiff/EulerFieldIntegratorTest.java     | 105 +++
 .../nonstiff/EulerFieldStepInterpolatorTest.java   |  62 ++
 .../math3/ode/nonstiff/EulerIntegratorTest.java    |  12 +-
 .../ode/nonstiff/EulerStepInterpolatorTest.java    |   2 +-
 .../ode/nonstiff/GillFieldIntegratorTest.java      | 103 +++
 .../nonstiff/GillFieldStepInterpolatorTest.java    |  63 ++
 .../math3/ode/nonstiff/GillIntegratorTest.java     |  13 +-
 .../ode/nonstiff/GillStepInterpolatorTest.java     |   2 +-
 .../GraggBulirschStoerStepInterpolatorTest.java    |   2 +-
 .../nonstiff/HighamHall54FieldIntegratorTest.java  |  97 +++
 .../HighamHall54FieldStepInterpolatorTest.java     |  63 ++
 .../ode/nonstiff/HighamHall54IntegratorTest.java   |   2 +-
 .../nonstiff/HighamHall54StepInterpolatorTest.java |   2 +-
 .../ode/nonstiff/LutherFieldIntegratorTest.java    | 122 +++
 .../nonstiff/LutherFieldStepInterpolatorTest.java  |  63 ++
 .../math3/ode/nonstiff/LutherIntegratorTest.java   |  11 +-
 .../ode/nonstiff/LutherStepInterpolatorTest.java   |   2 +-
 .../ode/nonstiff/MidpointFieldIntegratorTest.java  | 103 +++
 .../MidpointFieldStepInterpolatorTest.java         |  63 ++
 .../math3/ode/nonstiff/MidpointIntegratorTest.java |  12 +-
 .../ode/nonstiff/MidpointStepInterpolatorTest.java |   2 +-
 .../RungeKuttaFieldIntegratorAbstractTest.java     | 662 ++++++++++++++
 ...ungeKuttaFieldStepInterpolatorAbstractTest.java | 305 +++++++
 .../math3/ode/nonstiff/StepFieldProblem.java       |  78 ++
 .../nonstiff/ThreeEighthesFieldIntegratorTest.java | 103 +++
 .../ThreeEighthesFieldStepInterpolatorTest.java    |  63 ++
 .../ode/nonstiff/ThreeEighthesIntegratorTest.java  |  11 +-
 .../ThreeEighthesStepInterpolatorTest.java         |   2 +-
 .../ode/sampling/DummyFieldStepInterpolator.java   |  55 ++
 .../sampling/NordsieckStepInterpolatorTest.java    |   8 +-
 .../ode/sampling/StepInterpolatorTestUtils.java    |  59 +-
 .../ode/sampling/StepNormalizerOutputTestBase.java |   8 +-
 .../math3/optim/SimplePointCheckerTest.java        |   2 +-
 .../math3/optim/SimpleValueCheckerTest.java        |   2 +-
 .../math3/optim/linear/SimplexSolverTest.java      |  40 +-
 .../scalar/noderiv/BOBYQAOptimizerTest.java        |  42 +-
 .../scalar/noderiv/CMAESOptimizerTest.java         |  12 +-
 .../AbstractLeastSquaresOptimizerAbstractTest.java |   2 +-
 .../nonlinear/vector/jacobian/CircleProblem.java   |   2 +-
 .../nonlinear/vector/jacobian/MinpackTest.java     |   2 +-
 .../math3/optim/univariate/BrentOptimizerTest.java |   2 +-
 .../MultiStartUnivariateOptimizerTest.java         |   2 +-
 .../SimpleUnivariateValueCheckerTest.java          |   2 +-
 .../math3/optimization/SimplePointCheckerTest.java |   2 +-
 .../math3/optimization/SimpleValueCheckerTest.java |   2 +-
 .../optimization/direct/BOBYQAOptimizerTest.java   |  42 +-
 .../optimization/direct/CMAESOptimizerTest.java    |  14 +-
 .../optimization/fitting/GaussianFitterTest.java   |  16 +-
 .../AbstractLeastSquaresOptimizerAbstractTest.java |   2 +-
 .../NonLinearConjugateGradientOptimizerTest.java   |   2 +-
 .../optimization/linear/SimplexSolverTest.java     |  26 +-
 .../univariate/BrentOptimizerTest.java             |   2 +-
 .../SimpleUnivariateValueCheckerTest.java          |   2 +-
 .../UnivariateMultiStartOptimizerTest.java         |   2 +-
 .../apache/commons/math3/primes/PrimesTest.java    |   2 +-
 .../math3/random/AbstractRandomGeneratorTest.java  |   4 +-
 .../math3/random/BitsStreamGeneratorTest.java      |  16 +-
 .../CorrelatedRandomVectorGeneratorTest.java       |  10 +-
 .../math3/random/EmpiricalDistributionTest.java    |  74 +-
 .../math3/random/HaltonSequenceGeneratorTest.java  |   4 +-
 .../commons/math3/random/MersenneTwisterTest.java  |   4 +-
 .../commons/math3/random/RandomAdaptorTest.java    |   6 +-
 .../math3/random/RandomDataGeneratorTest.java      |  94 +-
 .../math3/random/RandomGeneratorAbstractTest.java  |   2 +-
 .../math3/random/SobolSequenceGeneratorTest.java   |   8 +-
 .../math3/random/StableRandomGeneratorTest.java    |   6 +-
 .../UnitSphereRandomVectorGeneratorTest.java       |   2 +-
 .../commons/math3/random/ValueServerTest.java      |   8 +-
 .../commons/math3/random/Well19937aTest.java       |   2 +-
 .../commons/math3/random/Well19937cTest.java       |   2 +-
 .../commons/math3/random/Well44497aTest.java       |   4 +-
 .../commons/math3/random/Well44497bTest.java       |   4 +-
 .../apache/commons/math3/random/Well512aTest.java  |   2 +-
 .../apache/commons/math3/special/BesselJTest.java  |   6 +-
 .../org/apache/commons/math3/special/ErfTest.java  |  54 +-
 .../apache/commons/math3/special/GammaTest.java    |  29 +
 .../apache/commons/math3/stat/FrequencyTest.java   |  36 +-
 .../apache/commons/math3/stat/StatUtilsTest.java   |  16 +-
 .../math3/stat/clustering/DBSCANClustererTest.java |  10 +-
 .../clustering/KMeansPlusPlusClustererTest.java    |   8 +-
 .../stat/correlation/KendallsCorrelationTest.java  |  20 +-
 .../correlation/SpearmansRankCorrelationTest.java  |   4 +-
 .../stat/correlation/StorelessCovarianceTest.java  |  10 +-
 .../AggregateSummaryStatisticsTest.java            |  40 +-
 .../descriptive/DescriptiveStatisticsTest.java     |   2 +-
 .../descriptive/StatisticalSummaryValuesTest.java  |   2 +-
 .../StorelessUnivariateStatisticAbstractTest.java  |   2 +-
 .../stat/descriptive/SummaryStatisticsTest.java    |  20 +-
 .../UnivariateStatisticAbstractTest.java           |   4 +-
 .../descriptive/rank/PSquarePercentileTest.java    |   4 +-
 .../stat/descriptive/rank/PercentileTest.java      |   4 +-
 .../stat/descriptive/summary/ProductTest.java      |   2 +-
 .../math3/stat/descriptive/summary/SumLogTest.java |   4 +-
 .../math3/stat/descriptive/summary/SumSqTest.java  |   2 +-
 .../math3/stat/descriptive/summary/SumTest.java    |   2 +-
 .../commons/math3/stat/inference/GTestTest.java    |  14 +-
 .../stat/inference/KolmogorovSmirnovTestTest.java  | 408 ++++++++-
 .../math3/stat/inference/MannWhitneyUTestTest.java |  14 +-
 .../math3/stat/inference/TestUtilsTest.java        |   6 +-
 .../stat/inference/WilcoxonSignedRankTestTest.java |  36 +-
 .../stat/interval/AgrestiCoullIntervalTest.java    |   2 +-
 .../BinomialConfidenceIntervalAbstractTest.java    |   4 +-
 .../stat/interval/ClopperPearsonIntervalTest.java  |   2 +-
 .../math3/stat/interval/IntervalUtilsTest.java     |   4 +-
 .../interval/NormalApproximationIntervalTest.java  |   2 +-
 .../stat/interval/WilsonScoreIntervalTest.java     |   2 +-
 .../math3/stat/ranking/NaturalRankingTest.java     |  14 +-
 .../GLSMultipleLinearRegressionTest.java           |  44 +-
 .../regression/MillerUpdatingRegressionTest.java   |  34 +-
 .../MultipleLinearRegressionAbstractTest.java      |  20 +-
 .../OLSMultipleLinearRegressionTest.java           |  88 +-
 .../stat/regression/SimpleRegressionTest.java      |   7 +-
 .../transform/FastFourierTransformerTest.java      |   2 +
 .../commons/math3/util/ArithmeticUtilsTest.java    |  22 +-
 .../commons/math3/util/CombinationsTest.java       |   4 +-
 .../apache/commons/math3/util/FastMathTest.java    | 492 ++++++++++-
 .../apache/commons/math3/util/IncrementorTest.java |   4 +-
 .../commons/math3/util/IntegerSequenceTest.java    | 278 ++++++
 .../apache/commons/math3/util/MathArraysTest.java  | 196 ++++-
 .../math3/util/ResizableDoubleArrayTest.java       |  25 +-
 test-jar.xml                                       |  50 +-
 631 files changed, 26627 insertions(+), 4927 deletions(-)
 create mode 100644 pmd-ruleset.xml
 copy src/main/java/org/apache/commons/math3/analysis/{UnivariateFunction.java => RealFieldUnivariateFunction.java} (77%)
 create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/InterpolatingMicrosphere.java
 create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/InterpolatingMicrosphere2D.java
 create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/MicrosphereProjectionInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/analysis/solvers/BracketedRealFieldUnivariateSolver.java
 copy src/main/java/org/apache/commons/math3/{dfp/BracketingNthOrderBrentSolverDFP.java => analysis/solvers/FieldBracketingNthOrderBrentSolver.java} (74%)
 create mode 100644 src/main/java/org/apache/commons/math3/geometry/euclidean/threed/RotationConvention.java
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/HitHistogram.java
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/LocationFinder.java
 copy src/main/java/org/apache/commons/math3/ml/{distance/DistanceMeasure.java => neuralnet/twod/util/MapDataVisualization.java} (58%)
 copy src/{test/java/org/apache/commons/math3/ode/TestProblem5.java => main/java/org/apache/commons/math3/ml/neuralnet/twod/util/MapVisualization.java} (63%)
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/QuantizationError.java
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/SmoothedDataHistogram.java
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/TopographicErrorHistogram.java
 create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/UnifiedDistanceMatrix.java
 copy src/{test/java/org/apache/commons/math3/exception/MaxCountExceededExceptionTest.java => main/java/org/apache/commons/math3/ml/neuralnet/twod/util/package-info.java} (69%)
 create mode 100644 src/main/java/org/apache/commons/math3/ode/AbstractFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/ContinuousOutputFieldModel.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldEquationsMapper.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldExpandableODE.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldODEState.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldODEStateAndDerivative.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldSecondaryEquations.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FirstOrderFieldDifferentialEquations.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/FirstOrderFieldIntegrator.java
 copy src/main/java/org/apache/commons/math3/ode/{MultistepIntegrator.java => MultistepFieldIntegrator.java} (60%)
 create mode 100644 src/main/java/org/apache/commons/math3/ode/events/Action.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/events/FieldEventHandler.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/events/FieldEventState.java
 copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsBashforthIntegrator.java => AdamsBashforthFieldIntegrator.java} (51%)
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldStepInterpolator.java
 copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsMoultonIntegrator.java => AdamsMoultonFieldIntegrator.java} (59%)
 copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsNordsieckTransformer.java => AdamsNordsieckFieldTransformer.java} (56%)
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdaptiveStepsizeFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EmbeddedRungeKuttaFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EulerFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EulerFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/FieldButcherArrayProvider.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/GillFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/GillFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/LutherFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/LutherFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldIntegrator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/AbstractFieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldFixedStepHandler.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepHandler.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepInterpolator.java
 create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepNormalizer.java
 create mode 100644 src/main/java/org/apache/commons/math3/util/IntegerSequence.java
 create mode 100644 src/site/xdoc/userguide/leastsquares.xml
 create mode 100644 src/test/java/org/apache/commons/math3/analysis/interpolation/MicrosphereProjectionInterpolatorTest.java
 copy src/test/java/org/apache/commons/math3/{dfp/BracketingNthOrderBrentSolverDFPTest.java => analysis/solvers/FieldBracketingNthOrderBrentSolverTest.java} (77%)
 create mode 100644 src/test/java/org/apache/commons/math3/ml/neuralnet/twod/util/LocationFinderTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/ContinuousOutputFieldModelTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/FieldExpandableODETest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem1.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem2.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem3.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem4.java
 rename src/test/java/org/apache/commons/math3/ode/{TestProblemFactory.java => TestFieldProblem5.java} (61%)
 copy src/test/java/org/apache/commons/math3/ode/{TestProblem6.java => TestFieldProblem6.java} (53%)
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblemAbstract.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblemHandler.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsBashforthFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldIntegratorAbstractTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsMoultonFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsNordsieckTransformerTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungKuttaFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EmbeddedRungeKuttaFieldIntegratorAbstractTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EulerFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EulerFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/GillFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/GillFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/LutherFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/LutherFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldIntegratorAbstractTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldStepInterpolatorAbstractTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/StepFieldProblem.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldIntegratorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldStepInterpolatorTest.java
 create mode 100644 src/test/java/org/apache/commons/math3/ode/sampling/DummyFieldStepInterpolator.java
 create mode 100644 src/test/java/org/apache/commons/math3/util/IntegerSequenceTest.java

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-java/commons-math3.git



More information about the pkg-java-commits mailing list