[commons-math3] branch master updated (e1abfc0 -> d06cbd3)
Emmanuel Bourg
ebourg-guest at moszumanska.debian.org
Mon Jan 11 22:10:33 UTC 2016
This is an automated email from the git hooks/post-receive script.
ebourg-guest pushed a change to branch master
in repository commons-math3.
from e1abfc0 prepare changelog
new d85b96d Build with the DH sequencer instead of CDBS
new 0f658e5 Removed the unused build dependency on ant
adds ce59910 Imported Upstream version 3.6
new 3ed8e07 Merge tag 'upstream/3.6'
new d02289f New upstream release (3.6)
new a383a93 Refreshed the patches
new d06cbd3 Restored the changes from commons-math3/3.5-2
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
NOTICE.txt | 2 +-
RELEASE-NOTES.txt | 117 ++-
build.xml | 25 +-
checkstyle.xml | 14 +-
debian/changelog | 15 +
debian/control | 4 +-
debian/patches/03_libjs-mathjax.patch | 10 +-
debian/rules | 11 +-
findbugs-exclude-filter.xml | 22 +
pmd-ruleset.xml | 73 ++
pom.xml | 38 +-
src/changes/changes.xml | 240 ++++++
.../org/apache/commons/math3/FieldElement.java | 4 +-
.../org/apache/commons/math3/RealFieldElement.java | 6 +-
.../commons/math3/analysis/FunctionUtils.java | 49 +-
...ction.java => RealFieldUnivariateFunction.java} | 29 +-
.../commons/math3/analysis/UnivariateFunction.java | 8 +-
.../math3/analysis/differentiation/DSCompiler.java | 14 +-
.../differentiation/DerivativeStructure.java | 8 +-
.../FiniteDifferencesDifferentiator.java | 7 +-
.../analysis/differentiation/SparseGradient.java | 2 +-
.../math3/analysis/function/StepFunction.java | 9 +-
.../BaseAbstractUnivariateIntegrator.java | 43 +-
.../IterativeLegendreGaussIntegrator.java | 5 +-
.../integration/LegendreGaussIntegrator.java | 4 +-
.../analysis/integration/MidPointIntegrator.java | 4 +-
.../analysis/integration/RombergIntegrator.java | 8 +-
.../analysis/integration/SimpsonIntegrator.java | 6 +-
.../analysis/integration/TrapezoidIntegrator.java | 6 +-
.../analysis/integration/UnivariateIntegrator.java | 13 +-
.../integration/gauss/GaussIntegratorFactory.java | 8 +-
.../integration/gauss/HermiteRuleFactory.java | 23 +-
.../gauss/LegendreHighPrecisionRuleFactory.java | 2 +-
.../integration/gauss/LegendreRuleFactory.java | 2 +-
.../BicubicInterpolatingFunction.java | 2 +-
.../interpolation/BicubicInterpolator.java | 1 +
.../BicubicSplineInterpolatingFunction.java | 10 +-
.../DividedDifferenceInterpolator.java | 9 +-
.../interpolation/InterpolatingMicrosphere.java | 385 +++++++++
.../interpolation/InterpolatingMicrosphere2D.java | 87 ++
.../analysis/interpolation/LoessInterpolator.java | 30 +-
.../MicrosphereInterpolatingFunction.java | 3 +
.../interpolation/MicrosphereInterpolator.java | 3 +
.../MicrosphereProjectionInterpolator.java | 164 ++++
.../analysis/interpolation/SplineInterpolator.java | 12 +-
.../TricubicInterpolatingFunction.java | 12 +-
.../interpolation/TricubicInterpolator.java | 1 +
.../TricubicSplineInterpolatingFunction.java | 12 +-
.../interpolation/TricubicSplineInterpolator.java | 2 +-
.../UnivariatePeriodicInterpolator.java | 1 +
.../analysis/polynomials/PolynomialFunction.java | 18 +-
.../polynomials/PolynomialSplineFunction.java | 12 +-
.../analysis/polynomials/PolynomialsUtils.java | 108 ++-
.../solvers/BaseAbstractUnivariateSolver.java | 14 +-
.../BracketedRealFieldUnivariateSolver.java | 142 +++
.../solvers/BracketingNthOrderBrentSolver.java | 7 +-
.../math3/analysis/solvers/BrentSolver.java | 15 +-
.../FieldBracketingNthOrderBrentSolver.java} | 156 ++--
.../math3/analysis/solvers/LaguerreSolver.java | 28 +-
.../math3/analysis/solvers/MullerSolver.java | 6 +-
.../math3/analysis/solvers/MullerSolver2.java | 10 +-
.../analysis/solvers/UnivariateSolverUtils.java | 24 +-
.../org/apache/commons/math3/complex/Complex.java | 154 ++--
.../dfp/BracketingNthOrderBrentSolverDFP.java | 327 +------
.../java/org/apache/commons/math3/dfp/Dfp.java | 2 +-
.../java/org/apache/commons/math3/dfp/DfpMath.java | 5 -
.../commons/math3/dfp/UnivariateDfpFunction.java | 3 +-
.../distribution/AbstractIntegerDistribution.java | 4 +-
.../distribution/AbstractRealDistribution.java | 6 +-
.../math3/distribution/BetaDistribution.java | 137 +++
.../distribution/ConstantRealDistribution.java | 1 +
.../math3/distribution/EnumeratedDistribution.java | 8 +-
.../EnumeratedIntegerDistribution.java | 60 +-
.../distribution/EnumeratedRealDistribution.java | 66 +-
.../math3/distribution/GeometricDistribution.java | 50 +-
.../math3/distribution/GumbelDistribution.java | 1 +
.../math3/distribution/LaplaceDistribution.java | 1 +
.../math3/distribution/LogisticDistribution.java | 1 +
.../math3/distribution/NakagamiDistribution.java | 1 +
.../math3/distribution/NormalDistribution.java | 2 +-
.../math3/distribution/TriangularDistribution.java | 1 +
.../distribution/UniformRealDistribution.java | 1 +
.../math3/distribution/ZipfDistribution.java | 232 ++++-
.../math3/exception/util/ExceptionContext.java | 8 +-
.../math3/exception/util/LocalizedFormats.java | 4 +-
.../commons/math3/fitting/AbstractCurveFitter.java | 1 +
.../apache/commons/math3/fitting/CurveFitter.java | 3 +-
.../commons/math3/fitting/GaussianCurveFitter.java | 18 +-
.../commons/math3/fitting/GaussianFitter.java | 18 +-
.../fitting/leastsquares/GaussNewtonOptimizer.java | 15 +-
.../fitting/leastsquares/LeastSquaresFactory.java | 4 +
.../apache/commons/math3/fraction/BigFraction.java | 103 ++-
.../apache/commons/math3/fraction/Fraction.java | 4 +-
.../math3/genetics/AbstractListChromosome.java | 1 +
.../commons/math3/genetics/BinaryChromosome.java | 1 +
.../commons/math3/genetics/ChromosomePair.java | 1 +
.../commons/math3/genetics/ListPopulation.java | 2 +-
.../apache/commons/math3/genetics/RandomKey.java | 1 +
.../math3/genetics/TournamentSelection.java | 1 +
.../math3/geometry/euclidean/oned/Interval.java | 6 +
.../geometry/euclidean/oned/IntervalsSet.java | 2 +-
.../geometry/euclidean/oned/SubOrientedPoint.java | 18 +-
.../geometry/euclidean/threed/FieldRotation.java | 948 ++++++++++++++++-----
.../euclidean/threed/OutlineExtractor.java | 2 +-
.../geometry/euclidean/threed/PolyhedronsSet.java | 25 +-
.../math3/geometry/euclidean/threed/Rotation.java | 905 ++++++++++++++------
.../euclidean/threed/RotationConvention.java | 79 ++
.../euclidean/threed/SphericalCoordinates.java | 2 +-
.../math3/geometry/euclidean/threed/SubPlane.java | 52 +-
.../math3/geometry/euclidean/twod/Line.java | 83 +-
.../math3/geometry/euclidean/twod/NestedLoops.java | 5 +-
.../math3/geometry/euclidean/twod/PolygonsSet.java | 14 +-
.../math3/geometry/euclidean/twod/SubLine.java | 33 +-
.../euclidean/twod/hull/MonotoneChain.java | 2 +
.../geometry/partitioning/AbstractRegion.java | 41 +-
.../partitioning/AbstractSubHyperplane.java | 5 +-
.../math3/geometry/partitioning/BSPTree.java | 9 +-
.../geometry/partitioning/BoundaryProjector.java | 4 +-
.../geometry/partitioning/BoundarySizeVisitor.java | 2 +-
.../geometry/partitioning/Characterization.java | 6 +-
.../math3/geometry/partitioning/InsideFinder.java | 10 +-
.../math3/geometry/partitioning/Region.java | 5 +-
.../math3/geometry/partitioning/RegionFactory.java | 33 +-
.../math3/geometry/partitioning/SubHyperplane.java | 26 +-
.../geometry/partitioning/utilities/AVLTree.java | 2 +-
.../math3/geometry/spherical/oned/ArcsSet.java | 59 +-
.../geometry/spherical/oned/SubLimitAngle.java | 8 -
.../math3/geometry/spherical/twod/Circle.java | 2 +-
.../geometry/spherical/twod/EdgesBuilder.java | 2 +-
.../spherical/twod/PropertiesComputer.java | 4 +-
.../spherical/twod/SphericalPolygonsSet.java | 6 +-
.../math3/geometry/spherical/twod/SubCircle.java | 28 +-
.../math3/linear/BiDiagonalTransformer.java | 2 +-
.../commons/math3/linear/FieldLUDecomposition.java | 4 +-
.../apache/commons/math3/linear/FieldMatrix.java | 13 +-
.../math3/linear/HessenbergTransformer.java | 2 +-
.../apache/commons/math3/linear/MatrixUtils.java | 4 +-
.../commons/math3/linear/SchurTransformer.java | 2 +-
.../org/apache/commons/math3/linear/SymmLQ.java | 2 +-
.../math3/linear/TriDiagonalTransformer.java | 2 +-
.../ml/clustering/KMeansPlusPlusClusterer.java | 2 +-
.../evaluation/SumOfClusterVariances.java | 1 +
.../math3/ml/distance/CanberraDistance.java | 6 +-
.../math3/ml/distance/ChebyshevDistance.java | 4 +-
.../commons/math3/ml/distance/DistanceMeasure.java | 5 +-
.../math3/ml/distance/EarthMoversDistance.java | 6 +-
.../math3/ml/distance/EuclideanDistance.java | 4 +-
.../math3/ml/distance/ManhattanDistance.java | 4 +-
.../commons/math3/ml/neuralnet/MapUtils.java | 83 +-
.../apache/commons/math3/ml/neuralnet/Network.java | 25 +
.../apache/commons/math3/ml/neuralnet/Neuron.java | 63 +-
.../ml/neuralnet/sofm/KohonenUpdateAction.java | 47 +-
.../ml/neuralnet/twod/NeuronSquareMesh2D.java | 195 ++++-
.../math3/ml/neuralnet/twod/util/HitHistogram.java | 83 ++
.../ml/neuralnet/twod/util/LocationFinder.java | 105 +++
.../twod/util/MapDataVisualization.java} | 28 +-
.../ml/neuralnet/twod/util/MapVisualization.java} | 33 +-
.../ml/neuralnet/twod/util/QuantizationError.java | 76 ++
.../neuralnet/twod/util/SmoothedDataHistogram.java | 97 +++
.../twod/util/TopographicErrorHistogram.java | 91 ++
.../neuralnet/twod/util/UnifiedDistanceMatrix.java | 209 +++++
.../ml/neuralnet/twod/util/package-info.java} | 16 +-
.../commons/math3/ode/AbstractFieldIntegrator.java | 453 ++++++++++
.../commons/math3/ode/AbstractIntegrator.java | 32 +-
.../math3/ode/ContinuousOutputFieldModel.java | 345 ++++++++
.../commons/math3/ode/ExpandableStatefulODE.java | 2 +-
.../commons/math3/ode/FieldEquationsMapper.java | 203 +++++
.../commons/math3/ode/FieldExpandableODE.java | 147 ++++
.../apache/commons/math3/ode/FieldODEState.java | 139 +++
.../math3/ode/FieldODEStateAndDerivative.java | 82 ++
.../commons/math3/ode/FieldSecondaryEquations.java | 75 ++
.../ode/FirstOrderFieldDifferentialEquations.java | 73 ++
.../math3/ode/FirstOrderFieldIntegrator.java | 188 ++++
.../apache/commons/math3/ode/JacobianMatrices.java | 4 +-
...tegrator.java => MultistepFieldIntegrator.java} | 255 +++---
.../commons/math3/ode/MultistepIntegrator.java | 38 +-
.../commons/math3/ode/ParameterConfiguration.java | 2 +-
.../math3/ode/ParameterJacobianWrapper.java | 6 +-
.../commons/math3/ode/ParameterizedWrapper.java | 2 +-
.../math3/ode/UnknownParameterException.java | 2 +-
.../apache/commons/math3/ode/events/Action.java | 56 ++
.../commons/math3/ode/events/EventFilter.java | 26 +-
.../commons/math3/ode/events/EventHandler.java | 2 +-
.../commons/math3/ode/events/EventState.java | 18 +-
.../math3/ode/events/FieldEventHandler.java | 180 ++++
.../commons/math3/ode/events/FieldEventState.java | 344 ++++++++
...tor.java => AdamsBashforthFieldIntegrator.java} | 251 +++---
.../ode/nonstiff/AdamsBashforthIntegrator.java | 123 ++-
.../math3/ode/nonstiff/AdamsFieldIntegrator.java | 145 ++++
.../ode/nonstiff/AdamsFieldStepInterpolator.java | 189 ++++
...rator.java => AdamsMoultonFieldIntegrator.java} | 249 +++---
.../math3/ode/nonstiff/AdamsMoultonIntegrator.java | 16 +-
...er.java => AdamsNordsieckFieldTransformer.java} | 238 +++---
.../ode/nonstiff/AdamsNordsieckTransformer.java | 100 ++-
.../nonstiff/AdaptiveStepsizeFieldIntegrator.java | 366 ++++++++
.../ClassicalRungeKuttaFieldIntegrator.java | 111 +++
.../ClassicalRungeKuttaFieldStepInterpolator.java | 136 +++
.../ClassicalRungeKuttaStepInterpolator.java | 5 +-
.../nonstiff/DormandPrince54FieldIntegrator.java | 232 +++++
.../DormandPrince54FieldStepInterpolator.java | 249 ++++++
.../nonstiff/DormandPrince54StepInterpolator.java | 5 +-
.../nonstiff/DormandPrince853FieldIntegrator.java | 454 ++++++++++
.../DormandPrince853FieldStepInterpolator.java | 302 +++++++
.../nonstiff/DormandPrince853StepInterpolator.java | 5 +-
.../EmbeddedRungeKuttaFieldIntegrator.java | 385 +++++++++
.../math3/ode/nonstiff/EulerFieldIntegrator.java | 96 +++
.../ode/nonstiff/EulerFieldStepInterpolator.java | 108 +++
.../math3/ode/nonstiff/EulerStepInterpolator.java | 5 +-
.../ode/nonstiff/FieldButcherArrayProvider.java | 46 +
.../math3/ode/nonstiff/GillFieldIntegrator.java | 121 +++
.../ode/nonstiff/GillFieldStepInterpolator.java | 148 ++++
.../math3/ode/nonstiff/GillStepInterpolator.java | 5 +-
.../GraggBulirschStoerStepInterpolator.java | 18 +-
.../ode/nonstiff/HighamHall54FieldIntegrator.java | 205 +++++
.../HighamHall54FieldStepInterpolator.java | 116 +++
.../ode/nonstiff/HighamHall54StepInterpolator.java | 5 +-
.../math3/ode/nonstiff/LutherFieldIntegrator.java | 146 ++++
.../ode/nonstiff/LutherFieldStepInterpolator.java | 224 +++++
.../math3/ode/nonstiff/LutherStepInterpolator.java | 5 +-
.../ode/nonstiff/MidpointFieldIntegrator.java | 96 +++
.../nonstiff/MidpointFieldStepInterpolator.java | 118 +++
.../ode/nonstiff/MidpointStepInterpolator.java | 5 +-
.../ode/nonstiff/RungeKuttaFieldIntegrator.java | 273 ++++++
.../nonstiff/RungeKuttaFieldStepInterpolator.java | 143 ++++
.../ode/nonstiff/RungeKuttaStepInterpolator.java | 2 +-
.../ode/nonstiff/ThreeEighthesFieldIntegrator.java | 110 +++
.../ThreeEighthesFieldStepInterpolator.java | 139 +++
.../nonstiff/ThreeEighthesStepInterpolator.java | 5 +-
.../sampling/AbstractFieldStepInterpolator.java | 171 ++++
.../math3/ode/sampling/FieldFixedStepHandler.java | 69 ++
.../math3/ode/sampling/FieldStepHandler.java | 75 ++
.../math3/ode/sampling/FieldStepInterpolator.java | 76 ++
.../math3/ode/sampling/FieldStepNormalizer.java | 273 ++++++
.../math3/ode/sampling/StepNormalizerBounds.java | 3 +-
.../math3/ode/sampling/StepNormalizerMode.java | 1 +
.../apache/commons/math3/optim/PointValuePair.java | 2 +-
.../commons/math3/optim/PointVectorValuePair.java | 2 +-
.../math3/optim/linear/LinearConstraint.java | 2 +
.../optim/linear/LinearObjectiveFunction.java | 2 +
.../commons/math3/optim/linear/Relationship.java | 3 +-
.../commons/math3/optim/linear/SimplexTableau.java | 2 +
.../math3/optim/nonlinear/scalar/LineSearch.java | 1 +
.../scalar/MultiStartMultivariateOptimizer.java | 1 +
.../scalar/MultivariateFunctionMappingAdapter.java | 6 +-
.../NonLinearConjugateGradientOptimizer.java | 2 +-
.../nonlinear/scalar/noderiv/BOBYQAOptimizer.java | 25 +-
.../nonlinear/scalar/noderiv/CMAESOptimizer.java | 4 +-
.../nonlinear/scalar/noderiv/SimplexOptimizer.java | 2 +
.../MultiStartMultivariateVectorOptimizer.java | 3 +
.../math3/optim/univariate/BracketFinder.java | 14 +-
.../univariate/MultiStartUnivariateOptimizer.java | 1 +
.../BaseMultivariateMultiStartOptimizer.java | 1 +
.../BaseMultivariateVectorMultiStartOptimizer.java | 1 +
.../commons/math3/optimization/PointValuePair.java | 2 +-
.../math3/optimization/PointVectorValuePair.java | 2 +-
.../math3/optimization/direct/BOBYQAOptimizer.java | 25 +-
.../math3/optimization/direct/CMAESOptimizer.java | 2 +-
.../direct/MultivariateFunctionMappingAdapter.java | 8 +-
.../math3/optimization/direct/PowellOptimizer.java | 1 +
.../optimization/direct/SimplexOptimizer.java | 2 +
.../math3/optimization/fitting/CurveFitter.java | 5 +-
.../math3/optimization/fitting/GaussianFitter.java | 18 +-
.../NonLinearConjugateGradientOptimizer.java | 2 +-
.../optimization/linear/LinearConstraint.java | 2 +
.../linear/LinearObjectiveFunction.java | 2 +
.../math3/optimization/linear/Relationship.java | 3 +-
.../math3/optimization/linear/SimplexTableau.java | 2 +
.../univariate/UnivariateMultiStartOptimizer.java | 1 +
.../commons/math3/random/BitsStreamGenerator.java | 111 ++-
.../math3/random/EmpiricalDistribution.java | 17 +-
.../commons/math3/random/JDKRandomGenerator.java | 17 +
.../org/apache/commons/math3/special/Beta.java | 2 +
.../org/apache/commons/math3/special/Gamma.java | 12 +-
.../org/apache/commons/math3/stat/Frequency.java | 4 +-
.../stat/clustering/KMeansPlusPlusClusterer.java | 2 +-
.../stat/correlation/KendallsCorrelation.java | 3 +-
.../stat/correlation/SpearmansCorrelation.java | 3 +
.../correlation/StorelessBivariateCovariance.java | 4 +-
.../descriptive/AggregateSummaryStatistics.java | 14 +-
.../stat/descriptive/DescriptiveStatistics.java | 17 +-
.../math3/stat/descriptive/moment/FirstMoment.java | 4 +-
.../stat/descriptive/moment/FourthMoment.java | 4 +-
.../math3/stat/descriptive/moment/Skewness.java | 5 +
.../math3/stat/descriptive/moment/ThirdMoment.java | 4 +-
.../stat/descriptive/rank/PSquarePercentile.java | 3 +-
.../math3/stat/descriptive/rank/Percentile.java | 38 +-
.../stat/inference/KolmogorovSmirnovTest.java | 536 +++++++++---
.../commons/math3/stat/ranking/NaturalRanking.java | 2 +-
.../math3/transform/FastFourierTransformer.java | 3 +-
.../apache/commons/math3/util/Combinations.java | 9 +-
.../commons/math3/util/CombinatoricsUtils.java | 24 +-
.../org/apache/commons/math3/util/FastMath.java | 466 +++++-----
.../org/apache/commons/math3/util/Incrementor.java | 59 ++
.../apache/commons/math3/util/IntegerSequence.java | 362 ++++++++
.../commons/math3/util/IterationManager.java | 32 +-
.../org/apache/commons/math3/util/MathArrays.java | 363 +++++---
.../org/apache/commons/math3/util/MathUtils.java | 23 +
.../java/org/apache/commons/math3/util/Pair.java | 1 +
.../org/apache/commons/math3/util/Precision.java | 39 +-
.../commons/math3/util/ResizableDoubleArray.java | 24 +-
.../exception/util/LocalizedFormats_fr.properties | 2 +
src/site/site.xml | 8 +-
src/site/xdoc/download_math.xml | 26 +-
src/site/xdoc/userguide/analysis.xml | 44 +-
src/site/xdoc/userguide/exceptions.xml | 10 +-
src/site/xdoc/userguide/filter.xml | 6 +-
src/site/xdoc/userguide/fitting.xml | 8 +-
src/site/xdoc/userguide/genetics.xml | 8 +-
src/site/xdoc/userguide/geometry.xml | 124 ++-
src/site/xdoc/userguide/index.xml | 65 +-
src/site/xdoc/userguide/leastsquares.xml | 366 ++++++++
src/site/xdoc/userguide/ode.xml | 275 +++---
src/site/xdoc/userguide/optimization.xml | 7 +-
src/site/xdoc/userguide/stat.xml | 9 +-
src/test/R/ChiSquareDistributionTestCases.R | 8 +-
src/test/R/FDistributionTestCases.R | 8 +-
src/test/R/GammaDistributionTestCases.R | 8 +-
.../R/KolmogorovSmirnovDistributionTestCases.R | 6 +-
src/test/R/KolmogorovSmirnovTestCases.R | 62 +-
src/test/R/LevyDistributionTestCases.R | 5 +-
src/test/R/README.txt | 72 +-
src/test/R/TDistributionTestCases.R | 8 +-
src/test/R/TTestCases | 20 +-
src/test/R/WeibullDistributionTestCases.R | 8 +-
src/test/R/anovaTestCases | 8 +-
src/test/R/binomialTestCases | 8 +-
src/test/R/cauchyTestCases.R | 6 +-
src/test/R/chiSquareTestCases | 20 +-
src/test/R/correlationTestCases | 16 +-
src/test/R/covarianceTestCases | 16 +-
src/test/R/descriptiveTestCases | 6 +-
src/test/R/exponentialTestCases | 8 +-
src/test/R/geometricTestCases | 10 +-
src/test/R/hypergeometricTestCases | 12 +-
src/test/R/multipleOLSRegressionTestCases | 32 +-
src/test/R/nakagamiTestCases.R | 6 +-
src/test/R/normalTestCases | 8 +-
src/test/R/paretoTestCases | 11 +-
src/test/R/pascalTestCases | 6 +-
src/test/R/poissonTestCases | 12 +-
src/test/R/regressionTestCases | 24 +-
src/test/R/testAll | 14 +-
src/test/R/testFunctions | 6 +-
src/test/R/zipfTestCases | 6 +-
.../org/apache/commons/math3/PerfTestUtils.java | 2 +
.../commons/math3/analysis/FunctionUtilsTest.java | 8 +-
.../differentiation/DerivativeStructureTest.java | 16 +-
.../FiniteDifferencesDifferentiatorTest.java | 14 +-
.../differentiation/GradientFunctionTest.java | 4 +-
.../differentiation/JacobianFunctionTest.java | 4 +-
.../differentiation/SparseGradientTest.java | 4 +-
.../math3/analysis/function/GaussianTest.java | 2 +-
.../math3/analysis/function/LogisticTest.java | 8 +-
.../math3/analysis/function/SigmoidTest.java | 2 +-
.../math3/analysis/function/StepFunctionTest.java | 8 +-
.../integration/MidPointIntegratorTest.java | 4 +-
.../BicubicInterpolatingFunctionTest.java | 1 -
.../BicubicSplineInterpolatingFunctionTest.java | 21 +-
.../BicubicSplineInterpolatorTest.java | 8 +-
.../interpolation/MicrosphereInterpolatorTest.java | 3 +
.../MicrosphereProjectionInterpolatorTest.java | 148 ++++
.../PiecewiseBicubicSplineInterpolatorTest.java | 2 -
...ingPolynomialBicubicSplineInterpolatorTest.java | 10 +-
.../TricubicInterpolatingFunctionTest.java | 4 +-
.../interpolation/TricubicInterpolatorTest.java | 1 -
.../TricubicSplineInterpolatingFunctionTest.java | 18 +-
.../TricubicSplineInterpolatorTest.java | 14 +-
.../polynomials/PolynomialSplineFunctionTest.java | 2 +-
.../analysis/polynomials/PolynomialsUtilsTest.java | 2 +-
.../FieldBracketingNthOrderBrentSolverTest.java} | 46 +-
.../apache/commons/math3/complex/ComplexTest.java | 58 +-
.../commons/math3/complex/QuaternionTest.java | 15 +-
.../dfp/BracketingNthOrderBrentSolverDFPTest.java | 1 +
.../org/apache/commons/math3/dfp/DfpDecTest.java | 6 +-
.../org/apache/commons/math3/dfp/DfpMathTest.java | 122 +--
.../java/org/apache/commons/math3/dfp/DfpTest.java | 10 +
.../math3/distribution/BetaDistributionTest.java | 73 ++
.../distribution/BinomialDistributionTest.java | 4 +-
.../distribution/ConstantRealDistributionTest.java | 4 +-
.../EnumeratedIntegerDistributionTest.java | 9 +
.../EnumeratedRealDistributionTest.java | 14 +-
.../distribution/ExponentialDistributionTest.java | 1 +
.../math3/distribution/GammaDistributionTest.java | 3 +-
.../distribution/GeometricDistributionTest.java | 6 +-
.../HypergeometricDistributionTest.java | 14 +-
.../KolmogorovSmirnovDistributionTest.java | 8 +-
.../math3/distribution/LevyDistributionTest.java | 2 +-
.../MultivariateNormalDistributionTest.java | 2 +-
.../math3/distribution/NormalDistributionTest.java | 10 +
.../distribution/PoissonDistributionTest.java | 2 +-
.../distribution/RealDistributionAbstractTest.java | 18 +-
.../math3/distribution/TDistributionTest.java | 4 +-
.../distribution/UniformRealDistributionTest.java | 10 +-
.../math3/distribution/ZipfDistributionTest.java | 139 ++-
...teNormalMixtureExpectationMaximizationTest.java | 10 +-
.../exception/DimensionMismatchExceptionTest.java | 2 +-
.../exception/MaxCountExceededExceptionTest.java | 2 +-
.../NonMonotonicSequenceExceptionTest.java | 2 +-
.../math3/exception/NotPositiveExceptionTest.java | 2 +-
.../NotStrictlyPositiveExceptionTest.java | 2 +-
.../exception/NumberIsTooLargeExceptionTest.java | 2 +-
.../exception/NumberIsTooSmallExceptionTest.java | 2 +-
.../math3/exception/OutOfRangeExceptionTest.java | 2 +-
.../exception/TooManyEvaluationsExceptionTest.java | 2 +-
.../commons/math3/exception/util/ArgUtilsTest.java | 2 +-
.../math3/exception/util/ExceptionContextTest.java | 2 +-
.../math3/exception/util/LocalizedFormatsTest.java | 2 +-
.../commons/math3/filter/KalmanFilterTest.java | 50 +-
.../math3/fitting/GaussianCurveFitterTest.java | 16 +-
.../commons/math3/fitting/GaussianFitterTest.java | 16 +-
.../math3/fitting/HarmonicCurveFitterTest.java | 2 +-
.../math3/fitting/PolynomialCurveFitterTest.java | 2 +-
.../math3/fitting/SimpleCurveFitterTest.java | 5 +-
.../math3/fitting/leastsquares/CircleProblem.java | 2 +-
.../fitting/leastsquares/CircleVectorial.java | 2 +-
.../math3/fitting/leastsquares/MinpackTest.java | 4 +-
.../leastsquares/RandomCirclePointGenerator.java | 3 +-
.../RandomStraightLinePointGenerator.java | 3 +-
.../commons/math3/fraction/BigFractionTest.java | 4 +-
.../commons/math3/fraction/FractionTest.java | 11 +
.../commons/math3/genetics/CycleCrossoverTest.java | 4 +-
.../math3/genetics/DummyListChromosome.java | 2 +-
.../genetics/ElitisticListPopulationTest.java | 10 +-
.../commons/math3/genetics/ListPopulationTest.java | 26 +-
.../math3/genetics/NPointCrossoverTest.java | 16 +-
.../math3/genetics/OrderedCrossoverTest.java | 6 +-
.../commons/math3/genetics/RandomKeyTest.java | 2 +-
.../math3/genetics/UniformCrossoverTest.java | 14 +-
.../geometry/euclidean/oned/IntervalTest.java | 6 +
.../euclidean/threed/FieldRotationDSTest.java | 556 ++++++++++--
.../euclidean/threed/FieldRotationDfpTest.java | 434 ++++++++--
.../euclidean/threed/FieldVector3DTest.java | 8 +-
.../math3/geometry/euclidean/threed/LineTest.java | 2 +-
.../math3/geometry/euclidean/threed/PlaneTest.java | 6 +-
.../euclidean/threed/PolyhedronsSetTest.java | 28 +-
.../geometry/euclidean/threed/RotationTest.java | 360 +++++++-
.../euclidean/threed/SphereGeneratorTest.java | 2 +-
.../euclidean/threed/SphericalCoordinatesTest.java | 2 +-
.../geometry/euclidean/threed/SubLineTest.java | 2 +-
.../geometry/euclidean/threed/Vector3DTest.java | 8 +-
.../geometry/euclidean/twod/DiskGeneratorTest.java | 2 +-
.../math3/geometry/euclidean/twod/LineTest.java | 6 +-
.../geometry/euclidean/twod/PolygonsSetTest.java | 26 +-
.../geometry/euclidean/twod/Vector2DTest.java | 6 +-
.../hull/ConvexHullGenerator2DAbstractTest.java | 18 +-
.../math3/geometry/partitioning/RegionDumper.java | 2 +-
.../math3/geometry/partitioning/RegionParser.java | 2 +-
.../math3/geometry/spherical/oned/ArcsSetTest.java | 72 +-
.../math3/geometry/spherical/twod/CircleTest.java | 8 +-
.../spherical/twod/SphericalPolygonsSetTest.java | 22 +-
.../geometry/spherical/twod/SubCircleTest.java | 33 +-
.../math3/linear/Array2DRowRealMatrixTest.java | 2 +-
.../commons/math3/linear/DiagonalMatrixTest.java | 6 +-
.../math3/linear/EigenDecompositionTest.java | 20 +-
.../math3/linear/HessenbergTransformerTest.java | 10 +-
.../MatrixDimensionMismatchExceptionTest.java | 2 +-
.../commons/math3/linear/MatrixUtilsTest.java | 16 +-
.../commons/math3/linear/QRDecompositionTest.java | 2 +-
.../commons/math3/linear/RRQRSolverTest.java | 4 +-
.../RectangularCholeskyDecompositionTest.java | 2 +-
.../commons/math3/linear/SchurTransformerTest.java | 6 +-
.../math3/ml/clustering/DBSCANClustererTest.java | 10 +-
.../ml/clustering/KMeansPlusPlusClustererTest.java | 12 +-
.../MultiKMeansPlusPlusClustererTest.java | 2 +-
.../evaluation/SumOfClusterVariancesTest.java | 4 +-
.../commons/math3/ml/neuralnet/MapUtilsTest.java | 18 +
.../commons/math3/ml/neuralnet/NetworkTest.java | 41 +
.../commons/math3/ml/neuralnet/NeuronTest.java | 26 +
.../ml/neuralnet/OffsetFeatureInitializer.java | 2 +-
.../ml/neuralnet/sofm/KohonenTrainingTaskTest.java | 23 +-
.../neuralnet/sofm/TravellingSalesmanSolver.java | 60 +-
.../ml/neuralnet/twod/NeuronSquareMesh2DTest.java | 208 ++++-
.../ml/neuralnet/twod/util/LocationFinderTest.java | 69 ++
.../math3/ode/ContinuousOutputFieldModelTest.java | 219 +++++
.../commons/math3/ode/FieldExpandableODETest.java | 344 ++++++++
.../commons/math3/ode/JacobianMatricesTest.java | 27 +-
.../commons/math3/ode/TestFieldProblem1.java | 79 ++
.../commons/math3/ode/TestFieldProblem2.java | 78 ++
.../commons/math3/ode/TestFieldProblem3.java | 124 +++
.../commons/math3/ode/TestFieldProblem4.java | 160 ++++
...tProblemFactory.java => TestFieldProblem5.java} | 41 +-
.../{TestProblem6.java => TestFieldProblem6.java} | 66 +-
.../math3/ode/TestFieldProblemAbstract.java | 201 +++++
.../commons/math3/ode/TestFieldProblemHandler.java | 154 ++++
.../org/apache/commons/math3/ode/TestProblem1.java | 23 +-
.../org/apache/commons/math3/ode/TestProblem2.java | 19 +-
.../org/apache/commons/math3/ode/TestProblem3.java | 16 -
.../org/apache/commons/math3/ode/TestProblem4.java | 16 -
.../org/apache/commons/math3/ode/TestProblem5.java | 15 +-
.../org/apache/commons/math3/ode/TestProblem6.java | 19 +-
.../commons/math3/ode/TestProblemAbstract.java | 39 +-
.../commons/math3/ode/TestProblemHandler.java | 40 +-
.../commons/math3/ode/events/EventStateTest.java | 86 +-
.../AdamsBashforthFieldIntegratorTest.java | 78 ++
.../ode/nonstiff/AdamsBashforthIntegratorTest.java | 161 +++-
.../nonstiff/AdamsFieldIntegratorAbstractTest.java | 260 ++++++
.../nonstiff/AdamsMoultonFieldIntegratorTest.java | 78 ++
.../ode/nonstiff/AdamsMoultonIntegratorTest.java | 123 ++-
.../nonstiff/AdamsNordsieckTransformerTest.java | 120 +++
...lassicalRungKuttaFieldStepInterpolatorTest.java | 63 ++
.../ClassicalRungeKuttaFieldIntegratorTest.java | 103 +++
.../ClassicalRungeKuttaIntegratorTest.java | 11 +-
.../ClassicalRungeKuttaStepInterpolatorTest.java | 2 +-
.../DormandPrince54FieldIntegratorTest.java | 97 +++
.../DormandPrince54FieldStepInterpolatorTest.java | 63 ++
.../DormandPrince54StepInterpolatorTest.java | 2 +-
.../DormandPrince853FieldIntegratorTest.java | 97 +++
.../DormandPrince853FieldStepInterpolatorTest.java | 63 ++
.../DormandPrince853StepInterpolatorTest.java | 2 +-
...eddedRungeKuttaFieldIntegratorAbstractTest.java | 600 +++++++++++++
.../ode/nonstiff/EulerFieldIntegratorTest.java | 105 +++
.../nonstiff/EulerFieldStepInterpolatorTest.java | 62 ++
.../math3/ode/nonstiff/EulerIntegratorTest.java | 12 +-
.../ode/nonstiff/EulerStepInterpolatorTest.java | 2 +-
.../ode/nonstiff/GillFieldIntegratorTest.java | 103 +++
.../nonstiff/GillFieldStepInterpolatorTest.java | 63 ++
.../math3/ode/nonstiff/GillIntegratorTest.java | 13 +-
.../ode/nonstiff/GillStepInterpolatorTest.java | 2 +-
.../GraggBulirschStoerStepInterpolatorTest.java | 2 +-
.../nonstiff/HighamHall54FieldIntegratorTest.java | 97 +++
.../HighamHall54FieldStepInterpolatorTest.java | 63 ++
.../ode/nonstiff/HighamHall54IntegratorTest.java | 2 +-
.../nonstiff/HighamHall54StepInterpolatorTest.java | 2 +-
.../ode/nonstiff/LutherFieldIntegratorTest.java | 122 +++
.../nonstiff/LutherFieldStepInterpolatorTest.java | 63 ++
.../math3/ode/nonstiff/LutherIntegratorTest.java | 11 +-
.../ode/nonstiff/LutherStepInterpolatorTest.java | 2 +-
.../ode/nonstiff/MidpointFieldIntegratorTest.java | 103 +++
.../MidpointFieldStepInterpolatorTest.java | 63 ++
.../math3/ode/nonstiff/MidpointIntegratorTest.java | 12 +-
.../ode/nonstiff/MidpointStepInterpolatorTest.java | 2 +-
.../RungeKuttaFieldIntegratorAbstractTest.java | 662 ++++++++++++++
...ungeKuttaFieldStepInterpolatorAbstractTest.java | 305 +++++++
.../math3/ode/nonstiff/StepFieldProblem.java | 78 ++
.../nonstiff/ThreeEighthesFieldIntegratorTest.java | 103 +++
.../ThreeEighthesFieldStepInterpolatorTest.java | 63 ++
.../ode/nonstiff/ThreeEighthesIntegratorTest.java | 11 +-
.../ThreeEighthesStepInterpolatorTest.java | 2 +-
.../ode/sampling/DummyFieldStepInterpolator.java | 55 ++
.../sampling/NordsieckStepInterpolatorTest.java | 8 +-
.../ode/sampling/StepInterpolatorTestUtils.java | 59 +-
.../ode/sampling/StepNormalizerOutputTestBase.java | 8 +-
.../math3/optim/SimplePointCheckerTest.java | 2 +-
.../math3/optim/SimpleValueCheckerTest.java | 2 +-
.../math3/optim/linear/SimplexSolverTest.java | 40 +-
.../scalar/noderiv/BOBYQAOptimizerTest.java | 42 +-
.../scalar/noderiv/CMAESOptimizerTest.java | 12 +-
.../AbstractLeastSquaresOptimizerAbstractTest.java | 2 +-
.../nonlinear/vector/jacobian/CircleProblem.java | 2 +-
.../nonlinear/vector/jacobian/MinpackTest.java | 2 +-
.../math3/optim/univariate/BrentOptimizerTest.java | 2 +-
.../MultiStartUnivariateOptimizerTest.java | 2 +-
.../SimpleUnivariateValueCheckerTest.java | 2 +-
.../math3/optimization/SimplePointCheckerTest.java | 2 +-
.../math3/optimization/SimpleValueCheckerTest.java | 2 +-
.../optimization/direct/BOBYQAOptimizerTest.java | 42 +-
.../optimization/direct/CMAESOptimizerTest.java | 14 +-
.../optimization/fitting/GaussianFitterTest.java | 16 +-
.../AbstractLeastSquaresOptimizerAbstractTest.java | 2 +-
.../NonLinearConjugateGradientOptimizerTest.java | 2 +-
.../optimization/linear/SimplexSolverTest.java | 26 +-
.../univariate/BrentOptimizerTest.java | 2 +-
.../SimpleUnivariateValueCheckerTest.java | 2 +-
.../UnivariateMultiStartOptimizerTest.java | 2 +-
.../apache/commons/math3/primes/PrimesTest.java | 2 +-
.../math3/random/AbstractRandomGeneratorTest.java | 4 +-
.../math3/random/BitsStreamGeneratorTest.java | 16 +-
.../CorrelatedRandomVectorGeneratorTest.java | 10 +-
.../math3/random/EmpiricalDistributionTest.java | 74 +-
.../math3/random/HaltonSequenceGeneratorTest.java | 4 +-
.../commons/math3/random/MersenneTwisterTest.java | 4 +-
.../commons/math3/random/RandomAdaptorTest.java | 6 +-
.../math3/random/RandomDataGeneratorTest.java | 94 +-
.../math3/random/RandomGeneratorAbstractTest.java | 2 +-
.../math3/random/SobolSequenceGeneratorTest.java | 8 +-
.../math3/random/StableRandomGeneratorTest.java | 6 +-
.../UnitSphereRandomVectorGeneratorTest.java | 2 +-
.../commons/math3/random/ValueServerTest.java | 8 +-
.../commons/math3/random/Well19937aTest.java | 2 +-
.../commons/math3/random/Well19937cTest.java | 2 +-
.../commons/math3/random/Well44497aTest.java | 4 +-
.../commons/math3/random/Well44497bTest.java | 4 +-
.../apache/commons/math3/random/Well512aTest.java | 2 +-
.../apache/commons/math3/special/BesselJTest.java | 6 +-
.../org/apache/commons/math3/special/ErfTest.java | 54 +-
.../apache/commons/math3/special/GammaTest.java | 29 +
.../apache/commons/math3/stat/FrequencyTest.java | 36 +-
.../apache/commons/math3/stat/StatUtilsTest.java | 16 +-
.../math3/stat/clustering/DBSCANClustererTest.java | 10 +-
.../clustering/KMeansPlusPlusClustererTest.java | 8 +-
.../stat/correlation/KendallsCorrelationTest.java | 20 +-
.../correlation/SpearmansRankCorrelationTest.java | 4 +-
.../stat/correlation/StorelessCovarianceTest.java | 10 +-
.../AggregateSummaryStatisticsTest.java | 40 +-
.../descriptive/DescriptiveStatisticsTest.java | 2 +-
.../descriptive/StatisticalSummaryValuesTest.java | 2 +-
.../StorelessUnivariateStatisticAbstractTest.java | 2 +-
.../stat/descriptive/SummaryStatisticsTest.java | 20 +-
.../UnivariateStatisticAbstractTest.java | 4 +-
.../descriptive/rank/PSquarePercentileTest.java | 4 +-
.../stat/descriptive/rank/PercentileTest.java | 4 +-
.../stat/descriptive/summary/ProductTest.java | 2 +-
.../math3/stat/descriptive/summary/SumLogTest.java | 4 +-
.../math3/stat/descriptive/summary/SumSqTest.java | 2 +-
.../math3/stat/descriptive/summary/SumTest.java | 2 +-
.../commons/math3/stat/inference/GTestTest.java | 14 +-
.../stat/inference/KolmogorovSmirnovTestTest.java | 408 ++++++++-
.../math3/stat/inference/MannWhitneyUTestTest.java | 14 +-
.../math3/stat/inference/TestUtilsTest.java | 6 +-
.../stat/inference/WilcoxonSignedRankTestTest.java | 36 +-
.../stat/interval/AgrestiCoullIntervalTest.java | 2 +-
.../BinomialConfidenceIntervalAbstractTest.java | 4 +-
.../stat/interval/ClopperPearsonIntervalTest.java | 2 +-
.../math3/stat/interval/IntervalUtilsTest.java | 4 +-
.../interval/NormalApproximationIntervalTest.java | 2 +-
.../stat/interval/WilsonScoreIntervalTest.java | 2 +-
.../math3/stat/ranking/NaturalRankingTest.java | 14 +-
.../GLSMultipleLinearRegressionTest.java | 44 +-
.../regression/MillerUpdatingRegressionTest.java | 34 +-
.../MultipleLinearRegressionAbstractTest.java | 20 +-
.../OLSMultipleLinearRegressionTest.java | 88 +-
.../stat/regression/SimpleRegressionTest.java | 7 +-
.../transform/FastFourierTransformerTest.java | 2 +
.../commons/math3/util/ArithmeticUtilsTest.java | 22 +-
.../commons/math3/util/CombinationsTest.java | 4 +-
.../apache/commons/math3/util/FastMathTest.java | 492 ++++++++++-
.../apache/commons/math3/util/IncrementorTest.java | 4 +-
.../commons/math3/util/IntegerSequenceTest.java | 278 ++++++
.../apache/commons/math3/util/MathArraysTest.java | 196 ++++-
.../math3/util/ResizableDoubleArrayTest.java | 25 +-
test-jar.xml | 50 +-
631 files changed, 26627 insertions(+), 4927 deletions(-)
create mode 100644 pmd-ruleset.xml
copy src/main/java/org/apache/commons/math3/analysis/{UnivariateFunction.java => RealFieldUnivariateFunction.java} (77%)
create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/InterpolatingMicrosphere.java
create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/InterpolatingMicrosphere2D.java
create mode 100644 src/main/java/org/apache/commons/math3/analysis/interpolation/MicrosphereProjectionInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/analysis/solvers/BracketedRealFieldUnivariateSolver.java
copy src/main/java/org/apache/commons/math3/{dfp/BracketingNthOrderBrentSolverDFP.java => analysis/solvers/FieldBracketingNthOrderBrentSolver.java} (74%)
create mode 100644 src/main/java/org/apache/commons/math3/geometry/euclidean/threed/RotationConvention.java
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/HitHistogram.java
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/LocationFinder.java
copy src/main/java/org/apache/commons/math3/ml/{distance/DistanceMeasure.java => neuralnet/twod/util/MapDataVisualization.java} (58%)
copy src/{test/java/org/apache/commons/math3/ode/TestProblem5.java => main/java/org/apache/commons/math3/ml/neuralnet/twod/util/MapVisualization.java} (63%)
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/QuantizationError.java
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/SmoothedDataHistogram.java
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/TopographicErrorHistogram.java
create mode 100644 src/main/java/org/apache/commons/math3/ml/neuralnet/twod/util/UnifiedDistanceMatrix.java
copy src/{test/java/org/apache/commons/math3/exception/MaxCountExceededExceptionTest.java => main/java/org/apache/commons/math3/ml/neuralnet/twod/util/package-info.java} (69%)
create mode 100644 src/main/java/org/apache/commons/math3/ode/AbstractFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/ContinuousOutputFieldModel.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldEquationsMapper.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldExpandableODE.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldODEState.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldODEStateAndDerivative.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FieldSecondaryEquations.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FirstOrderFieldDifferentialEquations.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/FirstOrderFieldIntegrator.java
copy src/main/java/org/apache/commons/math3/ode/{MultistepIntegrator.java => MultistepFieldIntegrator.java} (60%)
create mode 100644 src/main/java/org/apache/commons/math3/ode/events/Action.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/events/FieldEventHandler.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/events/FieldEventState.java
copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsBashforthIntegrator.java => AdamsBashforthFieldIntegrator.java} (51%)
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldStepInterpolator.java
copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsMoultonIntegrator.java => AdamsMoultonFieldIntegrator.java} (59%)
copy src/main/java/org/apache/commons/math3/ode/nonstiff/{AdamsNordsieckTransformer.java => AdamsNordsieckFieldTransformer.java} (56%)
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/AdaptiveStepsizeFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EmbeddedRungeKuttaFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EulerFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/EulerFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/FieldButcherArrayProvider.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/GillFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/GillFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/LutherFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/LutherFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldIntegrator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/AbstractFieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldFixedStepHandler.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepHandler.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepInterpolator.java
create mode 100644 src/main/java/org/apache/commons/math3/ode/sampling/FieldStepNormalizer.java
create mode 100644 src/main/java/org/apache/commons/math3/util/IntegerSequence.java
create mode 100644 src/site/xdoc/userguide/leastsquares.xml
create mode 100644 src/test/java/org/apache/commons/math3/analysis/interpolation/MicrosphereProjectionInterpolatorTest.java
copy src/test/java/org/apache/commons/math3/{dfp/BracketingNthOrderBrentSolverDFPTest.java => analysis/solvers/FieldBracketingNthOrderBrentSolverTest.java} (77%)
create mode 100644 src/test/java/org/apache/commons/math3/ml/neuralnet/twod/util/LocationFinderTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/ContinuousOutputFieldModelTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/FieldExpandableODETest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem1.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem2.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem3.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblem4.java
rename src/test/java/org/apache/commons/math3/ode/{TestProblemFactory.java => TestFieldProblem5.java} (61%)
copy src/test/java/org/apache/commons/math3/ode/{TestProblem6.java => TestFieldProblem6.java} (53%)
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblemAbstract.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/TestFieldProblemHandler.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsBashforthFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsFieldIntegratorAbstractTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsMoultonFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/AdamsNordsieckTransformerTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungKuttaFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ClassicalRungeKuttaFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince54FieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/DormandPrince853FieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EmbeddedRungeKuttaFieldIntegratorAbstractTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EulerFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/EulerFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/GillFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/GillFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/HighamHall54FieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/LutherFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/LutherFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/MidpointFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldIntegratorAbstractTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/RungeKuttaFieldStepInterpolatorAbstractTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/StepFieldProblem.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldIntegratorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/nonstiff/ThreeEighthesFieldStepInterpolatorTest.java
create mode 100644 src/test/java/org/apache/commons/math3/ode/sampling/DummyFieldStepInterpolator.java
create mode 100644 src/test/java/org/apache/commons/math3/util/IntegerSequenceTest.java
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