[Git][java-team/jalview][master] 2 commits: Depending on libbiojava5-java instead of libbiojava4-java

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Java Maintainers / jalview


Commits:
2aa13a54 by Pierre Gruet at 2022-02-22T17:40:29+01:00
Depending on libbiojava5-java instead of libbiojava4-java

- - - - -
979e43fc by Pierre Gruet at 2022-02-22T20:40:04+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/jalview.manifest
- debian/pom.xml


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+jalview (2.11.1.4+dfsg-3) unstable; urgency=medium
+
+  * Depending on libbiojava5-java instead of libbiojava4-java
+
+ -- Pierre Gruet <pgt at debian.org>  Tue, 22 Feb 2022 17:40:38 +0100
+
 jalview (2.11.1.4+dfsg-2) unstable; urgency=medium
 
   * Correcting the BS package in dependency jmol, adding versioned dependency


=====================================
debian/control
=====================================
@@ -12,7 +12,7 @@ Build-Depends: debhelper-compat (= 13),
                javahelper,
                libapache-mime4j-java (>= 0.7.2),
                libaxis-java,
-               libbiojava4-java,
+               libbiojava5-java,
                libhtsjdk-java,
                libhttpclient-java,
                libhttpcore-java,


=====================================
debian/jalview.manifest
=====================================
@@ -1,3 +1,3 @@
 usr/share/java/jalview.jar:
- Class-Path: /usr/share/java/min-jaba-client.jar /usr/share/java/jersey1-client.jar /usr/share/java/jersey1-core.jar /usr/share/java/vamsas-client.jar /usr/share/java/varna.jar /usr/share/java/groovy-all.jar /usr/share/java/htsjdk.jar /usr/share/java/intervalstorej.jar /usr/share/java/miglayout.jar /usr/share/java/axis-jaxrpc.jar /usr/share/java/axis.jar /usr/share/java/httpmime.jar /usr/share/java/httpcore.jar /usr/share/java/httpclient.jar /usr/share/java/apache-mime4j-core.jar /usr/share/java/log4j-1.2.jar /usr/share/java/biojava4-ontology.jar /usr/share/java/jetty9-server.jar /usr/share/java/jetty9-util.jar /usr/share/java/org.jfree.svg.jar /usr/share/java/Jmol.jar /usr/share/java/json-simple.jar /usr/share/java/jsoup.jar /usr/share/java/jswingreader.jar /usr/share/java/jh.jar /usr/share/java/slf4j-api.jar /usr/share/java/jaxrs-api.jar /usr/share/java/commons-discovery.jar /usr/share/java/jaxws-rt.jar
+ Class-Path: /usr/share/java/min-jaba-client.jar /usr/share/java/jersey1-client.jar /usr/share/java/jersey1-core.jar /usr/share/java/vamsas-client.jar /usr/share/java/varna.jar /usr/share/java/groovy-all.jar /usr/share/java/htsjdk.jar /usr/share/java/intervalstorej.jar /usr/share/java/miglayout.jar /usr/share/java/axis-jaxrpc.jar /usr/share/java/axis.jar /usr/share/java/httpmime.jar /usr/share/java/httpcore.jar /usr/share/java/httpclient.jar /usr/share/java/apache-mime4j-core.jar /usr/share/java/log4j-1.2.jar /usr/share/java/biojava5-ontology.jar /usr/share/java/jetty9-server.jar /usr/share/java/jetty9-util.jar /usr/share/java/org.jfree.svg.jar /usr/share/java/Jmol.jar /usr/share/java/json-simple.jar /usr/share/java/jsoup.jar /usr/share/java/jswingreader.jar /usr/share/java/jh.jar /usr/share/java/slf4j-api.jar /usr/share/java/jaxrs-api.jar /usr/share/java/commons-discovery.jar /usr/share/java/jaxws-rt.jar
  Main-Class: jalview.bin.Launcher


=====================================
debian/pom.xml
=====================================
@@ -184,10 +184,8 @@
     </dependency>
     <dependency>
       <groupId>org.biojava</groupId>
-      <artifactId>biojava4-ontology</artifactId>
-      <version>debian</version>
-      <scope>system</scope>
-      <systemPath>/usr/share/java/biojava4-ontology.jar</systemPath>
+      <artifactId>biojava5-ontology</artifactId>
+      <version>5.x</version>
     </dependency>
     <dependency>
       <groupId>org.eclipse.jetty</groupId>



View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/6bb75c2f8519b315762e72a4d6b163049c225603...979e43fc2731d244d63b3f020e01c2be12ea8f66

-- 
View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/6bb75c2f8519b315762e72a4d6b163049c225603...979e43fc2731d244d63b3f020e01c2be12ea8f66
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