[Git][java-team/jalview][master] 5 commits: Depending on biojava6 instead of biojava5

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Java Maintainers / jalview


Commits:
e04cdfce by Pierre Gruet at 2023-01-12T17:40:32+01:00
Depending on biojava6 instead of biojava5

- - - - -
bda5f52a by Pierre Gruet at 2023-01-12T17:41:02+01:00
Raising Standards version to 4.6.2 (no change)

- - - - -
babd3e90 by Pierre Gruet at 2023-01-12T17:41:16+01:00
Updating changelog

- - - - -
44c28212 by Pierre Gruet at 2023-01-12T21:03:53+01:00
Set upstream metadata fields: Repository-Browse.

Changes-By: lintian-brush

- - - - -
71a9681c by Pierre Gruet at 2023-01-12T21:04:19+01:00
Upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/jalview.manifest
- debian/pom.xml
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+jalview (2.11.2.5+dfsg-2) unstable; urgency=medium
+
+  * Depending on biojava6 instead of biojava5
+  * Raising Standards version to 4.6.2 (no change)
+  * Set upstream metadata fields: Repository-Browse.
+
+ -- Pierre Gruet <pgt at debian.org>  Thu, 12 Jan 2023 21:04:14 +0100
+
 jalview (2.11.2.5+dfsg-1) unstable; urgency=medium
 
   * New upstream version 2.11.2.5+dfsg


=====================================
debian/control
=====================================
@@ -13,7 +13,7 @@ Build-Depends-Indep: groovy,
                      javahelp2,
                      libapache-mime4j-java,
                      libaxis-java,
-                     libbiojava5-java,
+                     libbiojava6-java,
                      libhtsjdk-java,
                      libhttpclient-java,
                      libhttpcore-java,
@@ -39,7 +39,7 @@ Build-Depends-Indep: groovy,
                      varna,
                      libandroid-json-org-java <!nocheck>,
                      testng <!nocheck>
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
 Vcs-Git: https://salsa.debian.org/java-team/jalview.git
 Vcs-Browser: https://salsa.debian.org/java-team/jalview
 Homepage: https://www.jalview.org


=====================================
debian/jalview.manifest
=====================================
@@ -1,3 +1,3 @@
 usr/share/java/jalview.jar:
- Class-Path: /usr/share/java/apache-mime4j-core.jar /usr/share/java/axis.jar /usr/share/java/axis-jaxrpc.jar /usr/share/java/biojava5-ontology.jar /usr/share/java/commons-discovery.jar /usr/share/java/groovy-all.jar /usr/share/java/htsjdk.jar /usr/share/java/httpclient.jar /usr/share/java/httpcore.jar /usr/share/java/httpmime.jar /usr/share/java/intervalstorej.jar /usr/share/java/jaxb-api.jar /usr/share/java/jaxb-impl.jar /usr/share/java/jaxrs-api.jar /usr/share/java/jaxws-rt.jar /usr/share/java/jersey1-client.jar /usr/share/java/jersey1-core.jar /usr/share/java/jetty9-server.jar /usr/share/java/jetty9-util.jar /usr/share/java/jh.jar /usr/share/java/Jmol.jar /usr/share/java/json.jar /usr/share/java/json-simple.jar /usr/share/java/jsoup.jar /usr/share/java/jswingreader.jar /usr/share/java/log4j-1.2.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar /usr/share/java/miglayout.jar /usr/share/java/min-jaba-client.jar /usr/share/java/org.jfree.svg.jar /usr/share/java/slf4j-api.jar /usr/share/java/vamsas-client.jar /usr/share/java/varna.jar
+ Class-Path: /usr/share/java/apache-mime4j-core.jar /usr/share/java/axis.jar /usr/share/java/axis-jaxrpc.jar /usr/share/java/biojava6-ontology.jar /usr/share/java/commons-discovery.jar /usr/share/java/groovy-all.jar /usr/share/java/htsjdk.jar /usr/share/java/httpclient.jar /usr/share/java/httpcore.jar /usr/share/java/httpmime.jar /usr/share/java/intervalstorej.jar /usr/share/java/jaxb-api.jar /usr/share/java/jaxb-impl.jar /usr/share/java/jaxrs-api.jar /usr/share/java/jaxws-rt.jar /usr/share/java/jersey1-client.jar /usr/share/java/jersey1-core.jar /usr/share/java/jetty9-server.jar /usr/share/java/jetty9-util.jar /usr/share/java/jh.jar /usr/share/java/Jmol.jar /usr/share/java/json.jar /usr/share/java/json-simple.jar /usr/share/java/jsoup.jar /usr/share/java/jswingreader.jar /usr/share/java/log4j-1.2.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar /usr/share/java/miglayout.jar /usr/share/java/min-jaba-client.jar /usr/share/java/org.jfree.svg.jar /usr/share/java/slf4j-api.jar /usr/share/java/vamsas-client.jar /usr/share/java/varna.jar
  Main-Class: jalview.bin.Launcher


=====================================
debian/pom.xml
=====================================
@@ -184,7 +184,7 @@
     </dependency>
     <dependency>
       <groupId>org.biojava</groupId>
-      <artifactId>biojava5-ontology</artifactId>
+      <artifactId>biojava6-ontology</artifactId>
       <version>5.x</version>
     </dependency>
     <dependency>


=====================================
debian/rules
=====================================
@@ -7,7 +7,7 @@ export LC_ALL=C.UTF-8
 DEBIAN_JARS=/usr/share/java/apache-mime4j-core.jar \
             /usr/share/java/axis.jar \
             /usr/share/java/axis-jaxrpc.jar \
-            /usr/share/java/biojava5-ontology.jar \
+            /usr/share/java/biojava6-ontology.jar \
             /usr/share/java/commons-discovery.jar \
             /usr/share/java/groovy-all.jar \
             /usr/share/java/htsjdk.jar \


=====================================
debian/upstream/metadata
=====================================
@@ -35,4 +35,4 @@ Registry:
  - Name: conda:bioconda
    Entry: jalview
 Bug-Submit: https://issues.jalview.org/secure/Dashboard.jspa
-Repository-Browse: http://source.jalview.org/gitweb/?p=jalview.git;a=summary
+Repository-Browse: https://source.jalview.org/gitweb/?p=jalview.git;a=summary



View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/6ac58fc92d47fe37ea4edb4be339b87a6b0c2f82...71a9681c813a8f1c873864f960dad46f3e3f29d1

-- 
View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/6ac58fc92d47fe37ea4edb4be339b87a6b0c2f82...71a9681c813a8f1c873864f960dad46f3e3f29d1
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