[Git][java-team/jalview][experimental] 3 commits: Waiting a bit for the launcher to start

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch experimental at Debian Java Maintainers / jalview


Commits:
7b9e8f11 by Pierre Gruet at 2024-10-05T23:47:35+02:00
Waiting a bit for the launcher to start

- - - - -
df497ffd by Pierre Gruet at 2024-10-05T23:48:40+02:00
Launcher autopkgtest with xvfb-run to avoid errors due to headless environment

- - - - -
6f87a62c by Pierre Gruet at 2024-10-05T23:49:19+02:00
Upload to experimental

- - - - -


5 changed files:

- debian/changelog
- debian/patches/series
- + debian/patches/waiting_launcher.patch
- debian/tests/control
- debian/tests/someCommandLineInvocations


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+jalview (2.11.4.0+dfsg-3~exp1) experimental; urgency=medium
+
+  * Waiting a bit for the launcher to start
+  * Launching autopkgtest with xvfb-run to avoid errors due to headless
+    environment
+
+ -- Pierre Gruet <pgt at debian.org>  Sat, 05 Oct 2024 23:48:52 +0200
+
 jalview (2.11.4.0+dfsg-3~exp0) experimental; urgency=medium
 
   * Putting example files in the working directory of the autopkgtest


=====================================
debian/patches/series
=====================================
@@ -13,3 +13,4 @@ timestamp_from_changelog.patch
 groovy_syntax.patch
 deactivate_flatlaf.patch
 unneeded_checks_when_launching.patch
+waiting_launcher.patch


=====================================
debian/patches/waiting_launcher.patch
=====================================
@@ -0,0 +1,17 @@
+Description: wiaint a bit for the launcher to start instead of failing at
+ startup
+Author: Pierre Gruet <pgt at debian.org>
+Forwarded: no
+Last-Update: 2024-10-05
+
+--- a/src/jalview/bin/Launcher.java
++++ b/src/jalview/bin/Launcher.java
+@@ -93,7 +93,7 @@
+     // must set --debug before --launcher...
+     boolean launcherstop = false;
+     boolean launcherprint = false;
+-    boolean launcherwait = false;
++    boolean launcherwait = true;
+     ArrayList<String> arguments = new ArrayList<>();
+     String previousArg = null;
+     // set debug first


=====================================
debian/tests/control
=====================================
@@ -1,5 +1,5 @@
 Tests: someCommandLineInvocations
-Depends: @
+Depends: @, xauth, xvfb
 Restrictions: allow-stderr
 
 Tests: run-unit-test


=====================================
debian/tests/someCommandLineInvocations
=====================================
@@ -12,12 +12,12 @@ TEMP_HOME=$(mktemp -d)
 trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
 cp -r examples $WORKDIR
 cd $WORKDIR
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -blc uniref50_out.blc
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -fasta uniref50_out.mfa
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pfam uniref50_out.pfam
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pir uniref50_out.pir
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -clustal uniref50_out1.aln
-HOME="${TEMP_HOME}" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pileup uniref50_out2.aln
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -blc uniref50_out.blc
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -fasta uniref50_out.mfa
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pfam uniref50_out.pfam
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pir uniref50_out.pir
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -clustal uniref50_out1.aln
+HOME="${TEMP_HOME}" xvfb-run --auto-servernum --server-args="-screen 0 1024x768x24" jalview -nodisplay -jvmmemmax=512m -open examples/uniref50.fa -pileup uniref50_out2.aln
 
 diff uniref50_out.blc $SOURCEDIR/debian/tests/expectedOutputs/test_uniref50_out.blc
 



View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/2e74e9c10442a3069cceaab5d4419ff6b76ce3ca...6f87a62c29eedf6d05d2fe79df9fd8fe09d3250d

-- 
View it on GitLab: https://salsa.debian.org/java-team/jalview/-/compare/2e74e9c10442a3069cceaab5d4419ff6b76ce3ca...6f87a62c29eedf6d05d2fe79df9fd8fe09d3250d
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