[Git][java-team/ciftools-java][upstream] New upstream version 7.0.1
Andrius Merkys (@merkys)
gitlab at salsa.debian.org
Fri Apr 25 13:31:57 BST 2025
Andrius Merkys pushed to branch upstream at Debian Java Maintainers / ciftools-java
Commits:
a6efc2d4 by Andrius Merkys at 2025-04-25T06:49:16-04:00
New upstream version 7.0.1
- - - - -
148 changed files:
- CHANGELOG.md
- README.md
- pom.xml
- pom.xml.releaseBackup
- release.properties
- src/main/java/org/rcsb/cif/schema/DelegatingColumn.java
- − src/main/java/org/rcsb/cif/schema/core/Atom.java
- src/main/java/org/rcsb/cif/schema/core/AtomAnalytical.java
- src/main/java/org/rcsb/cif/schema/core/AtomAnalyticalMassLoss.java
- src/main/java/org/rcsb/cif/schema/core/AtomAnalyticalSource.java
- src/main/java/org/rcsb/cif/schema/core/AtomScatVersusStol.java
- src/main/java/org/rcsb/cif/schema/core/AtomSite.java
- src/main/java/org/rcsb/cif/schema/core/AtomSiteAniso.java
- src/main/java/org/rcsb/cif/schema/core/AtomSites.java
- src/main/java/org/rcsb/cif/schema/core/AtomSitesCartnTransform.java
- src/main/java/org/rcsb/cif/schema/core/AtomSitesFractTransform.java
- src/main/java/org/rcsb/cif/schema/core/AtomType.java
- src/main/java/org/rcsb/cif/schema/core/AtomTypeScat.java
- src/main/java/org/rcsb/cif/schema/core/Audit.java
- src/main/java/org/rcsb/cif/schema/core/AuditAuthor.java
- src/main/java/org/rcsb/cif/schema/core/AuditAuthorRole.java
- src/main/java/org/rcsb/cif/schema/core/AuditConform.java
- src/main/java/org/rcsb/cif/schema/core/AuditContactAuthor.java
- src/main/java/org/rcsb/cif/schema/core/AuditLink.java
- src/main/java/org/rcsb/cif/schema/core/AuditSupport.java
- src/main/java/org/rcsb/cif/schema/core/Cell.java
- src/main/java/org/rcsb/cif/schema/core/CellMeasurement.java
- src/main/java/org/rcsb/cif/schema/core/CellMeasurementRefln.java
- src/main/java/org/rcsb/cif/schema/core/Chemical.java
- src/main/java/org/rcsb/cif/schema/core/ChemicalConnAtom.java
- src/main/java/org/rcsb/cif/schema/core/ChemicalConnBond.java
- src/main/java/org/rcsb/cif/schema/core/ChemicalFormula.java
- − src/main/java/org/rcsb/cif/schema/core/CifCore.java
- src/main/java/org/rcsb/cif/schema/core/CifCoreBlock.java
- src/main/java/org/rcsb/cif/schema/core/CifCoreBlockBuilder.java
- src/main/java/org/rcsb/cif/schema/core/CifCoreCategoryBuilder.java
- src/main/java/org/rcsb/cif/schema/core/Citation.java
- src/main/java/org/rcsb/cif/schema/core/CitationAuthor.java
- src/main/java/org/rcsb/cif/schema/core/CitationEditor.java
- src/main/java/org/rcsb/cif/schema/core/Computing.java
- src/main/java/org/rcsb/cif/schema/core/Database.java
- src/main/java/org/rcsb/cif/schema/core/DatabaseCode.java
- src/main/java/org/rcsb/cif/schema/core/DatabaseRelated.java
- − src/main/java/org/rcsb/cif/schema/core/Diffraction.java
- src/main/java/org/rcsb/cif/schema/core/Diffrn.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnAttenuator.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnDetector.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnMeasurement.java
- − src/main/java/org/rcsb/cif/schema/core/DiffrnOrient.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnOrientMatrix.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnOrientRefln.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnRadiation.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnRadiationWavelength.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnRefln.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnReflns.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnReflnsClass.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnReflnsTransfMatrix.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnScaleGroup.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnSource.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnStandardRefln.java
- src/main/java/org/rcsb/cif/schema/core/DiffrnStandards.java
- − src/main/java/org/rcsb/cif/schema/core/Display.java
- src/main/java/org/rcsb/cif/schema/core/DisplayColour.java
- src/main/java/org/rcsb/cif/schema/core/Exptl.java
- src/main/java/org/rcsb/cif/schema/core/ExptlAbsorpt.java
- src/main/java/org/rcsb/cif/schema/core/ExptlCrystal.java
- src/main/java/org/rcsb/cif/schema/core/ExptlCrystalAppearance.java
- src/main/java/org/rcsb/cif/schema/core/ExptlCrystalFace.java
- src/main/java/org/rcsb/cif/schema/core/Function.java
- src/main/java/org/rcsb/cif/schema/core/Geom.java
- src/main/java/org/rcsb/cif/schema/core/GeomAngle.java
- src/main/java/org/rcsb/cif/schema/core/GeomBond.java
- src/main/java/org/rcsb/cif/schema/core/GeomContact.java
- src/main/java/org/rcsb/cif/schema/core/GeomHbond.java
- src/main/java/org/rcsb/cif/schema/core/GeomTorsion.java
- src/main/java/org/rcsb/cif/schema/core/Journal.java
- src/main/java/org/rcsb/cif/schema/core/JournalCoeditor.java
- src/main/java/org/rcsb/cif/schema/core/JournalDate.java
- src/main/java/org/rcsb/cif/schema/core/JournalIndex.java
- src/main/java/org/rcsb/cif/schema/core/JournalTecheditor.java
- − src/main/java/org/rcsb/cif/schema/core/Model.java
- src/main/java/org/rcsb/cif/schema/core/ModelSite.java
- src/main/java/org/rcsb/cif/schema/core/Publ.java
- src/main/java/org/rcsb/cif/schema/core/PublAuthor.java
- src/main/java/org/rcsb/cif/schema/core/PublBody.java
- src/main/java/org/rcsb/cif/schema/core/PublContactAuthor.java
- src/main/java/org/rcsb/cif/schema/core/PublManuscript.java
- src/main/java/org/rcsb/cif/schema/core/PublManuscriptInclExtra.java
- src/main/java/org/rcsb/cif/schema/core/PublRequested.java
- src/main/java/org/rcsb/cif/schema/core/PublSection.java
- − src/main/java/org/rcsb/cif/schema/core/Publication.java
- src/main/java/org/rcsb/cif/schema/core/Refine.java
- src/main/java/org/rcsb/cif/schema/core/RefineDiff.java
- src/main/java/org/rcsb/cif/schema/core/RefineLs.java
- src/main/java/org/rcsb/cif/schema/core/RefineLsClass.java
- src/main/java/org/rcsb/cif/schema/core/Refln.java
- src/main/java/org/rcsb/cif/schema/core/Reflns.java
- src/main/java/org/rcsb/cif/schema/core/ReflnsClass.java
- src/main/java/org/rcsb/cif/schema/core/ReflnsScale.java
- src/main/java/org/rcsb/cif/schema/core/ReflnsShell.java
- src/main/java/org/rcsb/cif/schema/core/SpaceGroup.java
- src/main/java/org/rcsb/cif/schema/core/SpaceGroupGenerator.java
- src/main/java/org/rcsb/cif/schema/core/SpaceGroupSymop.java
- src/main/java/org/rcsb/cif/schema/core/SpaceGroupWyckoff.java
- − src/main/java/org/rcsb/cif/schema/core/Structure.java
- − src/main/java/org/rcsb/cif/schema/core/Valence.java
- src/main/java/org/rcsb/cif/schema/core/ValenceParam.java
- src/main/java/org/rcsb/cif/schema/core/ValenceRef.java
- src/main/java/org/rcsb/cif/schema/mm/EmImaging.java
- + src/main/java/org/rcsb/cif/schema/mm/EmMotionCorrection.java
- src/main/java/org/rcsb/cif/schema/mm/EntityPoly.java
- src/main/java/org/rcsb/cif/schema/mm/IhmModelGroup.java
- src/main/java/org/rcsb/cif/schema/mm/IhmModelGroupLink.java
- src/main/java/org/rcsb/cif/schema/mm/IhmModelList.java
- src/main/java/org/rcsb/cif/schema/mm/IhmModelRepresentative.java
- src/main/java/org/rcsb/cif/schema/mm/IhmOrderedEnsemble.java
- + src/main/java/org/rcsb/cif/schema/mm/IhmOrderedModel.java
- src/main/java/org/rcsb/cif/schema/mm/MaAssociatedArchiveFileDetails.java
- + src/main/java/org/rcsb/cif/schema/mm/MaAtomFeature.java
- + src/main/java/org/rcsb/cif/schema/mm/MaEntityInstanceFeature.java
- src/main/java/org/rcsb/cif/schema/mm/MaEntryAssociatedFiles.java
- + src/main/java/org/rcsb/cif/schema/mm/MaFeatureList.java
- + src/main/java/org/rcsb/cif/schema/mm/MaModelGroup.java
- + src/main/java/org/rcsb/cif/schema/mm/MaModelGroupLink.java
- src/main/java/org/rcsb/cif/schema/mm/MaModelList.java
- + src/main/java/org/rcsb/cif/schema/mm/MaModelRepresentative.java
- + src/main/java/org/rcsb/cif/schema/mm/MaPolyResidueFeature.java
- + src/main/java/org/rcsb/cif/schema/mm/MaQaMetricFeature.java
- + src/main/java/org/rcsb/cif/schema/mm/MaQaMetricFeaturePairwise.java
- src/main/java/org/rcsb/cif/schema/mm/MaQaMetricGlobal.java
- src/main/java/org/rcsb/cif/schema/mm/MaQaMetricLocal.java
- src/main/java/org/rcsb/cif/schema/mm/MaQaMetricLocalPairwise.java
- src/main/java/org/rcsb/cif/schema/mm/MaTargetRefDbDetails.java
- + src/main/java/org/rcsb/cif/schema/mm/MaTemplateBranched.java
- src/main/java/org/rcsb/cif/schema/mm/MaTemplateDetails.java
- src/main/java/org/rcsb/cif/schema/mm/MaTemplateNonPoly.java
- src/main/java/org/rcsb/cif/schema/mm/MaTemplatePoly.java
- src/main/java/org/rcsb/cif/schema/mm/MmCifBlock.java
- src/main/java/org/rcsb/cif/schema/mm/MmCifBlockBuilder.java
- src/main/java/org/rcsb/cif/schema/mm/MmCifCategoryBuilder.java
- src/main/java/org/rcsb/cif/schema/mm/PdbxAuditRevisionHistory.java
- src/main/java/org/rcsb/cif/schema/mm/PdbxDepuiStatusFlags.java
- src/main/java/org/rcsb/cif/schema/mm/PdbxDomainRange.java
- src/main/java/org/rcsb/cif/schema/mm/PdbxModificationFeature.java
- src/main/java/org/rcsb/cif/schema/mm/Refine.java
- src/main/java/org/rcsb/cif/schema/mm/RefineLsShell.java
- src/test/java/org/rcsb/cif/ReaderTest.java
- + src/test/resources/bcif/9a2f.bcif.gz
The diff was not included because it is too large.
View it on GitLab: https://salsa.debian.org/java-team/ciftools-java/-/commit/a6efc2d4f7d2fd7c7e502e4af13bdb95ec342324
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View it on GitLab: https://salsa.debian.org/java-team/ciftools-java/-/commit/a6efc2d4f7d2fd7c7e502e4af13bdb95ec342324
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