[Git][java-team/openchemlib][master] Update debian/copyright.

Tue Feb 24 08:19:48 GMT 2026


Andrius Merkys pushed to branch master at Debian Java Maintainers / openchemlib


Commits:
edf0d48a by Andrius Merkys at 2026-02-24T03:19:29-05:00
Update debian/copyright.

- - - - -


1 changed file:

- debian/copyright


Changes:

=====================================
debian/copyright
=====================================
@@ -8,148 +8,106 @@ Files-Excluded:
  src/main/java/info
 
 Files: *
-Copyright: 1997-2017, Actelion Pharmaceuticals Ltd.
+Copyright: 1997-2016, Actelion Pharmaceuticals Ltd.
 License: BSD-3-clause
 
-Files: ./src/main/java/com/actelion/research/calc/regression/ParameterRegressionMethod.java
- ./src/main/java/com/actelion/research/calc/statistics/median/MedianStatisticFunctions.java
- ./src/main/java/com/actelion/research/calc/statistics/median/ModelMedianFloat.java
- ./src/main/java/com/actelion/research/calc/statistics/median/ModelMedianInteger.java
- ./src/main/java/com/actelion/research/chem/descriptor/DescriptorHandlerFlexophore.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/IMolDistHist.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/MDHIndexTables.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistEncoder.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNode.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeViz.java
- ./src/main/java/com/actelion/research/chem/descriptor/flexophore/calculator/IntQueue.java
- ./src/main/java/com/actelion/research/chem/docking/scoring/idoscore/InteractionTerm.java
- ./src/main/java/com/actelion/research/chem/prediction/DruglikenessPredictorWithIndex.java
- ./src/main/java/com/actelion/research/chem/prediction/IncrementTableWithIndex.java
- ./src/main/java/com/actelion/research/chem/prediction/MolecularPropertyHelper.java
- ./src/main/java/com/actelion/research/chem/reaction/Classification.java
- ./src/main/java/com/actelion/research/gui/DefaultCompoundCollectionModel.java
- ./src/main/java/com/actelion/research/gui/JMultiPanelTitle.java
- ./src/main/java/com/actelion/research/gui/JProgressPanel.java
- ./src/main/java/com/actelion/research/util/BinaryEncoder.java
- ./src/main/java/com/actelion/research/util/ByteArrayArrayComparator.java
- ./src/main/java/com/actelion/research/util/ScaleLabel.java
- ./src/main/java/com/actelion/research/util/ScaleLabelCreator.java
- ./src/main/java/com/actelion/research/util/datamodel/ModelXYIndexHelper.java
-Copyright: 1997-2022, Idorsia Pharmaceuticals Ltd.
+Files: src/main/java/com/actelion/research/calc/regression/ParameterRegressionMethod.java
+ src/main/java/com/actelion/research/calc/statistics/median/MedianStatisticFunctions.java
+ src/main/java/com/actelion/research/calc/statistics/median/ModelMedianFloat.java
+ src/main/java/com/actelion/research/calc/statistics/median/ModelMedianInteger.java
+ src/main/java/com/actelion/research/chem/descriptor/DescriptorHandlerFlexophore.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/IMolDistHist.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/MDHIndexTables.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistEncoder.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNode.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeViz.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/calculator/IntQueue.java
+ src/main/java/com/actelion/research/chem/docking/scoring/idoscore/InteractionTerm.java
+ src/main/java/com/actelion/research/chem/prediction/DruglikenessPredictorWithIndex.java
+ src/main/java/com/actelion/research/chem/prediction/IncrementTableWithIndex.java
+ src/main/java/com/actelion/research/chem/prediction/MolecularPropertyHelper.java
+ src/main/java/com/actelion/research/chem/reaction/Classification.java
+ src/main/java/com/actelion/research/gui/DefaultCompoundCollectionModel.java
+ src/main/java/com/actelion/research/gui/JMultiPanelTitle.java
+ src/main/java/com/actelion/research/gui/JProgressPanel.java
+ src/main/java/com/actelion/research/util/BinaryEncoder.java
+ src/main/java/com/actelion/research/util/ByteArrayArrayComparator.java
+ src/main/java/com/actelion/research/util/ScaleLabel.java
+ src/main/java/com/actelion/research/util/ScaleLabelCreator.java
+ src/main/java/com/actelion/research/util/datamodel/ModelXYIndexHelper.java
+Copyright: 1997-2018, Idorsia Pharmaceuticals Ltd.
+  1997-2022, Idorsia Pharmaceuticals Ltd.
 License: BSD-3-clause
 
-Files: ./src/main/java/org/openmolecules/chem/conf/gen/ConformerGenerator.java
- ./src/main/java/org/openmolecules/chem/conf/gen/RigidFragment.java
- ./src/main/java/org/openmolecules/chem/conf/gen/RigidFragmentCache.java
- ./src/main/java/org/openmolecules/chem/conf/gen/RigidFragmentProvider.java
- ./src/main/java/org/openmolecules/chem/conf/gen/RotatableBond.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSet.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSetEliminationRule.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategy.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyAdaptiveRandom.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyLikelySystematic.java
- ./src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyRandom.java
- ./src/main/java/org/openmolecules/chem/conf/so/AxialStereoRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/ConformationRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/ConformationSelfOrganizer.java
- ./src/main/java/org/openmolecules/chem/conf/so/DistanceRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/PlaneRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/SelfOrganizedConformer.java
- ./src/main/java/org/openmolecules/chem/conf/so/StraightLineRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/TetrahedralStereoRule.java
- ./src/main/java/org/openmolecules/chem/conf/so/TorsionRule.java
-Copyright: 2013-2020, Thomas Sander, openmolecules.org
+Files: src/main/java/com/actelion/research/calc/regression/svm/svm.java
+ src/main/java/org/machinelearning/svm/libsvm/*
+Copyright: 2000-2018, Chih-Chung Chang and Chih-Jen Lin
 License: BSD-3-clause
 
-Files: ./src/main/java/com/actelion/research/chem/CanonizerUtil.java
- ./src/main/java/com/actelion/research/chem/DrawingObjectFactory.java
- ./src/main/java/com/actelion/research/jfx/gui/chem/JFXCanvasDepictor.java
- ./src/main/java/com/actelion/research/jfx/gui/chem/MoleculeView.java
- ./src/main/java/com/actelion/research/share/gui/editor/actions/DownBondAction.java
- ./src/main/java/com/actelion/research/share/gui/editor/actions/UpBondAction.java
-Copyright: 1997-2016
+Files: src/main/java/com/actelion/research/chem/io/pdb/calc/BondOrderCalculator.java
+ src/main/java/com/actelion/research/chem/io/pdb/calc/GraphWalker.java
+ src/main/java/org/openmolecules/chem/conf/gen/ConformerGenerator.java
+ src/main/java/org/openmolecules/chem/conf/gen/RigidFragment.java
+ src/main/java/org/openmolecules/chem/conf/gen/RigidFragmentCache.java
+ src/main/java/org/openmolecules/chem/conf/gen/RigidFragmentProvider.java
+ src/main/java/org/openmolecules/chem/conf/gen/RotatableBond.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSet.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSetEliminationRule.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategy.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyAdaptiveRandom.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyLikelySystematic.java
+ src/main/java/org/openmolecules/chem/conf/gen/TorsionSetStrategyRandom.java
+ src/main/java/org/openmolecules/chem/conf/so/AxialStereoRule.java
+ src/main/java/org/openmolecules/chem/conf/so/ConformationRule.java
+ src/main/java/org/openmolecules/chem/conf/so/ConformationSelfOrganizer.java
+ src/main/java/org/openmolecules/chem/conf/so/DistanceRule.java
+ src/main/java/org/openmolecules/chem/conf/so/PlaneRule.java
+ src/main/java/org/openmolecules/chem/conf/so/SelfOrganizedConformer.java
+ src/main/java/org/openmolecules/chem/conf/so/StraightLineRule.java
+ src/main/java/org/openmolecules/chem/conf/so/TetrahedralStereoRule.java
+ src/main/java/org/openmolecules/chem/conf/so/TorsionRule.java
+Copyright: 2013-2020, 2025, Thomas Sander, openmolecules.org
 License: BSD-3-clause
- FIXME
 
-Files: ./src/main/java/com/actelion/research/chem/reaction/RSSSearcher.java
- ./src/main/java/com/actelion/research/chem/reaction/ReactionIndexer.java
-Copyright: 1997-2014, Actelion Pharmaceuticals Ltd.
-License: UNKNOWN
- FIXME
+Files: src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistHelper.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeVizHelper.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeVizMultCoord.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/generator/ExceptionTimeOutConformerGeneration.java
+ src/main/java/com/actelion/research/chem/descriptor/flexophore/generator/SubFlexophoreExtractorHelper.java
+Copyright: 2024-2026, Alipheron AG
+License: BSD-3-clause
 
-Files: ./src/main/java/com/actelion/research/calc/regression/svm/svm.java
- ./src/main/java/org/machinelearning/svm/libsvm/COPYRIGHT
-Copyright: 2000-2018, Chih-Chung Chang and Chih-Jen Lin
-License: UNKNOWN
- FIXME
+Files: src/main/java/com/actelion/research/gui/clipboard/ClipboardFormat.java
+Copyright: 2024-2025, Christian Rufener
+License: BSD-3-clause
 
-Files: ./src/main/java/com/actelion/research/util/AnimatedGIFWriter.java
-Copyright: 2014-2016, Wen Yu.
+Files: src/main/java/com/actelion/research/util/AnimatedGIFWriter.java
+Copyright: 2014-2016, Wen Yu
 License: EPL-1.0
- FIXME
-
-Files: ./src/main/java/com/actelion/research/chem/shredder/MoleculeShredder.java
-Copyright: 1997-2001, Actelion Ltd., Inc.
-License: UNKNOWN
- FIXME
-
-Files: ./src/main/java/com/actelion/research/util/Sketch.java
-Copyright: 2002, Company: Actelion Ltd.
-License: UNKNOWN
- FIXME
 
 Files: src/main/java/com/actelion/research/chem/io/CDXMLParser.java
  src/main/java/com/actelion/research/chem/io/XmlReader.java
 Copyright: 2003-2005, Miguel, Jmol Development, www.jmol.org
 License: LGPL-2.1+
+ On Debian systems, the complete text of the GNU Lesser General Public
+ License version 2.1 can be found in /usr/share/common-licenses/LGPL-2.1.
 
 Files: src/main/java/smile/*
 Copyright: 2010, Haifeng Li
 License: Apache-2.0
 
+Files: src/main/java/smile/regression/NeuralNetwork.java
+Copyright: 2010, Haifeng Li
+ 2017, Sam Erickson
+License: Apache-2.0
+
 Files: debian/*
-Copyright: 2020-2025, Andrius Merkys <merkys at debian.org>
+Copyright: 2020-2026, Andrius Merkys <merkys at debian.org>
 License: BSD-3-clause
 
-Files: src/main/java/com/actelion/research/calc/statistics/median/MedianStatisticFunctions.java
- src/main/java/com/actelion/research/calc/statistics/median/ModelMedianFloat.java
- src/main/java/com/actelion/research/calc/statistics/median/ModelMedianInteger.java
- src/main/java/com/actelion/research/calc/statistics/median/ModelMedianLong.java
- src/main/java/com/actelion/research/chem/descriptor/DescriptorHandlerFlexophore.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/ClusterNode.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/DistHist.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/DistHistEncoder.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/ExceptionConformationGenerationFailed.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/IMolDistHist.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/IndexCoordinates.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MDHIndexTables.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHist.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistEncoder.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistViz.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistVizEncoder.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/MolDistHistVizFrag.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNode.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeViz.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/PPNodeVizTriangle.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/UnparametrizedAtomTypeException.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/calculator/GeometryCalculator.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/calculator/IntQueue.java
- src/main/java/com/actelion/research/chem/descriptor/flexophore/calculator/StructureCalculator.java
- src/main/java/com/actelion/research/util/datamodel/IntegerDouble.java
- src/main/java/com/actelion/research/chem/AtomTypeList.java
- src/main/java/com/actelion/research/chem/Mutation.java
- src/main/java/com/actelion/research/chem/Mutator.java
- src/main/java/com/actelion/research/chem/ScaffoldHelper.java
- src/main/java/com/actelion/research/gui/CompoundCollectionListener.java
- src/main/java/com/actelion/research/gui/CompoundCollectionModel.java
- src/main/java/com/actelion/research/gui/CompoundCollectionPane.java
- src/main/java/com/actelion/research/gui/DefaultCompoundCollectionModel.java
- src/main/java/com/actelion/research/gui/JDrawDialog.java
- src/main/java/com/actelion/research/gui/JEditableStructureView.java
- src/main/java/com/actelion/research/gui/JStructureView.java
- src/main/java/com/actelion/research/gui/StructureListener.java
-Copyright: 1997-2022, Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 91, CH-4123 Allschwil, Switzerland
-License: GPL-3+
+License: Apache-2.0
+ On Debian systems, the complete text of the Apache License version 2.0 can be
+ found in /usr/share/common-licenses/Apache-2.0.
 
 License: BSD-3-clause
  Redistribution and use in source and binary forms, with or without
@@ -175,6 +133,218 @@ License: BSD-3-clause
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
-License: GPL-3+
- On Debian systems, the complete text of the GNU General Public
- License version 3 can be found in /usr/share/common-licenses/GPL-3.
+License: EPL-1.0
+ THE ACCOMPANYING PROGRAM IS PROVIDED UNDER THE TERMS OF THIS ECLIPSE PUBLIC
+ LICENSE ("AGREEMENT"). ANY USE, REPRODUCTION OR DISTRIBUTION OF THE PROGRAM
+ CONSTITUTES RECIPIENT'S ACCEPTANCE OF THIS AGREEMENT.
+ .
+ 1. DEFINITIONS
+ .
+ "Contribution" means:
+ .
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+ documentation distributed under this Agreement, and
+ .
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+ .
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+ .
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+ .
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+ distributed by that particular Contributor. A Contribution 'originates' from
+ a Contributor if it was added to the Program by such Contributor itself or
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+ This Agreement is governed by the laws of the State of Washington and the
+ intellectual property laws of the United States of America. No party to this
+ Agreement will bring a legal action under this Agreement more than one year
+ after the cause of action arose. Each party waives its rights to a jury trial
+ in any resulting litigation.



View it on GitLab: https://salsa.debian.org/java-team/openchemlib/-/commit/edf0d48ab7111282491f80e8a865beb2187d7474

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View it on GitLab: https://salsa.debian.org/java-team/openchemlib/-/commit/edf0d48ab7111282491f80e8a865beb2187d7474
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