Bug#474908: cdk: FTBFS: NomParserTokenManager cannot be resolved to a type
Lucas Nussbaum
lucas at lucas-nussbaum.net
Mon Apr 7 20:33:32 UTC 2008
Package: cdk
Version: 1:1.0.2-1
Severity: serious
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20080407 qa-ftbfs
Justification: FTBFS on i386
Hi,
During a rebuild of all packages in sid, your package failed to build on i386.
This rebuild was done with gcc 4.3 instead of gcc 4.2, because gcc 4.3 is now
the default on most architectures (even if it's not the case on i386 yet).
Feel free to downgrade this bug to 'important' if your package is only built
on i386, and this bug is specific to gcc 4.3 (i.e the package builds fine with
gcc 4.2).
Relevant part:
> make[1]: Entering directory `/build/user/cdk-1.0.2'
> make[1]: Nothing to be done for `update-config'.
> make[1]: Leaving directory `/build/user/cdk-1.0.2'
> cd . && /usr/lib/jvm/java-gcj/bin/java -classpath /usr/share/ant/lib/ant.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/java/ant-nodeps.jar:/usr/share/java/javacc.jar:/usr/share/java/vecmath1.2.jar:/usr/share/java/log4j-1.2.jar:/usr/share/java/commons-cli.jar:/usr/lib/jvm/java-gcj/lib/tools.jar -Dant.home=/usr/share/ant org.apache.tools.ant.Main -Dcompile.debug=true -Dcompile.optimize=true -propertyfile /build/user/cdk-1.0.2/debian/ant.properties info dist-all
> Buildfile: build.xml
>
> checkPlatforms:
>
> check:
>
> info:
> [echo] Platform:
> [echo] OS: Linux
> [echo] Architecture: i386
> [echo] Version: 2.6.18-3-amd64
> [echo] Mac OS/X found: ${isMacOsX}
> [echo]
> [echo] Java/Ant Environment:
> [echo] Java version: 1.5.0
> [echo] Java vendor: Free Software Foundation, Inc.
> [echo] Java dir: /usr/lib/jvm/java-1.5.0-gcj-4.3-1.5.0.0/jre
> [echo] Java ext dir: /usr/share/java/ext
> [echo] Java3: ${isJava13}
> [echo] Java4: ${isJava14}
> [echo] Java5: true
> [echo] Java6: ${isJava16}
> [echo] Java4+: true
> [echo] Java5+: true
> [echo] not Java5+: ${isNotJava15+}
> [echo] Java6: ${isJava16}
> [echo] Ant version: Apache Ant version 1.7.0 compiled on March 31 2008
> [echo] ${ANT_HOME}: /usr/share/ant
> [echo] hasAnt16: true
> [echo]
> [echo] CDK Environment:
> [echo] CDK version: 1.0.2
> [echo] build.xml: $Id: build.xml 10282 2008-03-02 15:25:03Z egonw $
> [echo] Junit found: ${junit.present}
> [echo] --- required libraries ---
> [echo] Vecmath found: true
> [echo] Log4j found: true
> [echo] JGraphT found: true
> [echo] --- distributed (but optional) libraries ---
> [echo] Batik found: ${batik.present}
> [echo] CMLDOM found: ${cmllibs.present}
> [echo] DADML found: ${dadml.present}
> [echo] JAI found: ${jai.present}
> [echo] XIndice found: ${xindice.present}
> [echo] SJava found: ${sjava.present}
> [echo] JNI-InChI found: ${jniinchi.present}
> [echo] --- optional libraries ---
> [echo]
> [echo] Compiling:
> [echo] for: modern
> [echo] debug: on
> [echo] nowarn: on
> [echo] deprecation: on
> [echo] optimization: off
>
> dist-all:
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
> [mkdir] Created dir: /build/user/cdk-1.0.2/build
> [mkdir] Created dir: /build/user/cdk-1.0.2/sourcedist
> [mkdir] Created dir: /build/user/cdk-1.0.2/dist
> [mkdir] Created dir: /build/user/cdk-1.0.2/reports
>
> init:
>
> javacc:
> [echo] Compiling Ant 1.6 depending classes.
> [javacc] Java Compiler Compiler Version 4.1d1 (Parser Generator)
> [javacc] (type "javacc" with no arguments for help)
> [javacc] Reading from file /build/user/cdk-1.0.2/src/org/openscience/cdk/iupac/parser/NomParser.jj . . .
> [javacc] Warning: Line 3, Column 1: Bad option name "OPTIMIZE_TOKEN_MANAGER". Option setting will be ignored.
> [javacc] File "TokenMgrError.java" does not exist. Will create one.
> [javacc] File "ParseException.java" does not exist. Will create one.
> [javacc] File "Token.java" does not exist. Will create one.
> [javacc] File "SimpleCharStream.java" does not exist. Will create one.
> [javacc] Parser generated with 0 errors and 1 warnings.
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [javac] Compiling 1 source file to /build/user/cdk-1.0.2/build
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
> [javac] Compiling 1 source file to /build/user/cdk-1.0.2/build
> [javac] ----------
> [javac] 1. WARNING in /build/user/cdk-1.0.2/src/net/sf/cdk/tools/MakeRequiresfilesFiles.java (at line 181)
> [javac] private String getClassName(File classFile) {
> [javac] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> [javac] The method getClassName(File) from the type MakeRequiresfilesFiles is never used locally
> [javac] ----------
> [javac] 1 problem (1 warning)
>
> checkCompilableBlobs:
>
> compile-init:
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's interfaces module.
> [mkdir] Created dir: /build/user/cdk-1.0.2/dist/jar
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: ${module.cdkdepends.present}
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 39 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 39 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-interfaces.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's core module.
> [echo] Datafiles defined: true
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 22 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 22 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-core.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's standard module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 82 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 82 source files to /build/user/cdk-1.0.2/build
> [javac] ----------
> [javac] 1. WARNING in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/geometry/BondTools.java (at line 431)
> [javac] int[] morgannumbers = MorganNumbersTools.getMorganNumbers(container);
> [javac]
> [javac] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> [javac] The method getMorganNumbers(IAtomContainer) from the type MorganNumbersTools is deprecated
> [javac] ----------
> [javac] ----------
> [javac] 2. WARNING in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/isomorphism/IsomorphismTester.java (at line 145)
> [javac] this.baseTable = MorganNumbersTools.getMorganNumbers(base);
> [javac] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> [javac] The method getMorganNumbers(IAtomContainer) from the type MorganNumbersTools is deprecated
> [javac] ----------
> [javac] 3. WARNING in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/isomorphism/IsomorphismTester.java
> [javac] (at line 159)
> [javac] this.compareTable = MorganNumbersTools.getMorganNumbers(compare);
> [javac] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> [javac] The method getMorganNumbers(IAtomContainer) from the type MorganNumbersTools is deprecated
> [javac] ----------
> [javac]
> [javac] 3 problems (3 warnings)
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-standard.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's data module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 36 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 36 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-data.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's render module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 13 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 13 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-render.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's io module.
> [echo] Datafiles defined: true
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 157 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 157 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-io.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's valencycheck module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 7 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 7 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-valencycheck.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's sdg module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 6 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 6 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-sdg.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's control module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 26 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 26 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-control.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's datadebug module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 34 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 34 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-datadebug.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's nonotify module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 34 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 34 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-nonotify.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's structgen module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 9 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 9 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-structgen.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's pdb module.
> [echo] Datafiles defined: ${module.datafiles.present}
> [echo] Extra files defined: true
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 4 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 4 source files to /build/user/cdk-1.0.2/build
> [jar] Building jar: /build/user/cdk-1.0.2/dist/jar/cdk-pdb.jar
>
> checkPlatforms:
>
> check:
>
> setupBuildDir:
>
> init:
>
> compile-needed-test:
>
> javacc:
>
> customize:
>
> runDoclet:
> [echo] Not skipping doclet run...
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/TokenMgrError.java
> [java] Something wrong with the Java source file: src/org/openscience/cdk/iupac/parser/NomParserTokenManager.java
>
> checkCompilableBlobs:
>
> compile-info:
> [echo] Determine compilable blobs...
> [echo] Compile DADML: ${compile.dadml}
> [echo] Compile JAI: ${compile.jai}
> [echo] Compile Xindice: ${compile.xindice}
> [echo] Compile Jumbo52: ${compile.jumbo52}
> [echo] Compile R Project: ${compile.r-project}
> [echo] Compile Batik: ${do.compile.batik}
> [echo] Compile JNI-InChI: ${compile.jniinchi}
>
> compile-module:
> [echo] Compiling classes for CDK's extra module.
> [echo] Datafiles defined: true
> [echo] Extra files defined: true
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined: ${module.devellibdepends.present}
> [delete] Deleting directory /build/user/cdk-1.0.2/build/src
> [mkdir] Created dir: /build/user/cdk-1.0.2/build/src
> [copy] Copying 125 files to /build/user/cdk-1.0.2/build/src
> [javac] Compiling 125 source files to /build/user/cdk-1.0.2/build
> [javac] ----------
> [javac] 1. WARNING in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/applications/swing/JExternalFrame.java (at line 86)
> [javac] super.show();
> [javac] ^^^^^^^^^^^^
> [javac] The method show() from the type Window is deprecated
> [javac] ----------
> [javac] ----------
> [javac] 2. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1588)
> [javac] public NomParserTokenManager token_source;
> [javac] ^^^^^^^^^^^^^^^^^^^^^
> [javac] NomParserTokenManager cannot be resolved to a type
> [javac] ----------
> [javac] 3. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1637)
> [javac] token_source = new NomParserTokenManager(jj_input_stream);
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 4. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1637)
> [javac] token_source = new NomParserTokenManager(jj_input_stream);
> [javac] ^^^^^^^^^^^^^^^^^^^^^
> [javac] NomParserTokenManager cannot be resolved to a type
> [javac] ----------
> [javac] 5. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1652)
> [javac] token_source.ReInit(jj_input_stream);
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 6. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1663)
> [javac] token_source = new NomParserTokenManager(jj_input_stream);
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 7. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1663)
> [javac] token_source = new NomParserTokenManager(jj_input_stream);
> [javac] ^^^^
> [javac] ^^^^^^^^^^^^^^^^^
> [javac] NomParserTokenManager cannot be resolved to a type
> [javac] ----------
> [javac] 8. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1674)
> [javac] token_source.ReInit(jj_input_stream);
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 9. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1683)
> [javac] public NomParser(NomParserTokenManager tm) {
> [javac] ^^^^^^^^^^^^^^^^^^^^^
> [javac] NomParserTokenManager cannot be resolved to a type
> [javac] ----------
> [javac] 10. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1684)
> [javac] token_source = tm;
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 11. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1693)
> [javac] public void ReInit(NomParserTokenManager tm) {
> [javac] ^^^^^^^^^^^^^^^^^^^^^
> [javac] NomParserTokenManager cannot be resolved to a type
> [javac] ----------
> [javac] 12. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1694)
> [javac] token_source = tm;
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 13. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1705)
> [javac] else token = token.next = token_source.getNextToken();
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 14. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1732)
> [javac] jj_lastpos = jj_scanpos = jj_scanpos.next = token_source.getNextToken();
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 15. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1753)
> [javac] else token = token.next = token_source.getNextToken();
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 16. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1764)
> [javac] else t = t.next = token_source.getNextToken();
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 17. ERROR in /build/user/cdk-1.0.2/build/src/org/openscience/cdk/iupac/parser/NomParser.java (at line 1771)
> [javac] return (jj_ntk = (token.next=token_source.getNextToken()).kind);
> [javac]
> [javac] ^^^^^^^^^^^^
> [javac] token_source cannot be resolved
> [javac] ----------
> [javac] 17 problems (16 errors, 1 warning)
>
> BUILD FAILED
> /build/user/cdk-1.0.2/build.xml:463: The following error occurred while executing this line:
> /build/user/cdk-1.0.2/build.xml:352: Compile failed; see the compiler error output for details.
>
> Total time: 22 seconds
> make: *** [debian/stamp-ant-build] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2008/04/07
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot containing a sid i386
environment. Internet was not accessible from the build systems.
--
| Lucas Nussbaum
| lucas at lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr GPG: 1024D/023B3F4F |
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