Bug#627683: libcdk-java: Cinfony does not work with Debian's CDK

[Adrià Cereto Massagué]

It turns out that I ws missing some stuff in CLASSPATH. After adding
xom and jaxen libraries I get a different error, though:

ssorgatem:/tmp$ python
Python 2.6.6 (r266:84292, Apr 20 2011, 09:34:38)
[GCC 4.5.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> from glob import glob
>>> import os
>>> os.environ['CLASSPATH'] = ":".join(glob("/usr/share/java/cdk*.jar")) + ":" + ":".join(glob("/usr/share/java/xom*.jar"))+ ":" + ":".join(glob("/usr/share/java/jaxen*.jar"))
>>> from cinfony import cdk
/usr/lib/pymodules/python2.6/jpype/_pykeywords.py:18:
DeprecationWarning: the sets module is deprecated
  import sets
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/lib/python2.6/dist-packages/cinfony/cdk.py", line
13, in <module>
    from cdkjpype import *
  File "/usr/local/lib/python2.6/dist-packages/cinfony/cdkjpype.py",
line 74, in <module>
    forcefields =
list(cdk.modeling.builder3d.ModelBuilder3D.getInstance().getFfTypes())
  File "/usr/lib/pymodules/python2.6/jpype/_jpackage.py", line 53, in __call__
    raise TypeError, "Package "+self.__name+" is not Callable"
TypeError: Package
org.openscience.cdk.modeling.builder3d.ModelBuilder3D.getInstance is
not Callable
>>>

-- 
Adrià Cereto Massagué
Biotechnology student
Universitat Rovira i Virgili

Languages: Català, Español, English, Français, Deutsch, Português, Esperanto

Nota importante | Important Notice