Bug#912371: java-common breaks starjava-votable autopkgtest
Paul Gevers
elbrus at debian.org
Tue Oct 30 19:08:29 GMT 2018
Source: java-common, starjava-votable
Control: found -1 java-common/0.70
Control: found -1 starjava-votable/2.0+2018.05.01-1
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: breaks needs-update
Dear maintainers,
With a recent upload of java-common the autopkgtest of starjava-votable
fails in testing when that autopkgtest is run with the binary packages
of java-common from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
java-common from testing 0.70
starjava-votable from testing 2.0+2018.05.01-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is contributing to the delay of the migration
of java-common to testing [1]. Due to the nature of this issue, I filed
this bug report against both packages. Can you please investigate the
situation and reassign the bug to the right package? If needed, please
change the bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=java-common
https://ci.debian.net/data/autopkgtest/testing/amd64/s/starjava-votable/1225607/log.gz
autopkgtest [18:58:51]: test command1: ant test -Dbuild.dir=$ADTTMP
-Drunonly.install=true -Djunit.present=true -Djava.awt.headless=true
autopkgtest [18:58:51]: test command1: [-----------------------
Buildfile: /tmp/autopkgtest-lxc.rb2iyjjs/downtmp/build.CnE/src/build.xml
prepare:
check_packages:
build:
compile-tests:
[mkdir] Created dir:
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/autopkgtest_tmp/testcases
[javac] Compiling 17 source files to
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/autopkgtest_tmp/testcases
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
run-tests:
[junit] Testsuite: uk.ac.starlink.votable.CoosysTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.857 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.DOMTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.654 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.FitsPlusTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.849 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.LinkTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.67 sec
[junit]
[junit] ------------- Standard Error -----------------
[junit] Oct 30, 2018 6:59:00 PM
uk.ac.starlink.table.storage.AdaptiveByteStore getDefaultLimit
[junit] INFO: AdaptiveByteStore default memory limit = 1872M * 0.125
= 234M
[junit] ------------- ---------------- ---------------
[junit] Testsuite: uk.ac.starlink.votable.MultiTest
[junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.998 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.ParameterTest
[junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.31 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.ReferenceTest
[junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.38 sec
[junit]
[junit] Testsuite: uk.ac.starlink.votable.SerializerTest
[junit] Tests run: 2, Failures: 0, Errors: 1, Skipped: 0, Time
elapsed: 2.15 sec
[junit]
[junit] ------------- Standard Error -----------------
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest10223147168984043305.dat
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest10223147168984043305.dat
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:04 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:04 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest15812415494802997538.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest7821491335334887297.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest13282744777746387536.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFactory
[junit] INFO: Will read stream (not random-access): STREAM
[junit] Oct 30, 2018 6:59:05 PM uk.ac.starlink.fits.InputFactory
createFileFactory
[junit] INFO: Will map as single block: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] Oct 30, 2018 6:59:05 PM
uk.ac.starlink.fits.SimpleMappedInput <init>
[junit] INFO: Mapping as single file: stest3990774301429634108.fits
[junit] ------------- ---------------- ---------------
[junit] Testcase: testURLs(uk.ac.starlink.votable.SerializerTest):
Caused an ERROR
[junit] Can't overwrite cause with java.io.FileNotFoundException:
stest10223147168984043305.dat (No such file or directory)
[junit] java.lang.IllegalStateException: Can't overwrite cause with
java.io.FileNotFoundException: stest10223147168984043305.dat (No such
file or directory)
[junit] at java.base/java.lang.Throwable.initCause(Throwable.java:462)
[junit] at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:156)
[junit] at
uk.ac.starlink.votable.SkeletonDOMBuilder$BasicContentHandler.startElement(SkeletonDOMBuilder.java:192)
[junit] at
uk.ac.starlink.votable.CustomDOMBuilder.startElement(CustomDOMBuilder.java:157)
[junit] at
uk.ac.starlink.votable.VOTableDOMBuilder.startElement(VOTableDOMBuilder.java:79)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:510)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:183)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(XMLDocumentFragmentScannerImpl.java:1377)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2708)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:605)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:534)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:888)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:824)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1216)
[junit] at
java.xml/com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:635)
[junit] at
uk.ac.starlink.votable.VOElementFactory.parseToDOM(VOElementFactory.java:536)
[junit] at
uk.ac.starlink.votable.VOElementFactory.transformToDOM(VOElementFactory.java:391)
[junit] at
uk.ac.starlink.votable.VOElementFactory.makeVOElement(VOElementFactory.java:221)
[junit] at
uk.ac.starlink.votable.SerializerTest.checkBadSource(SerializerTest.java:135)
[junit] at
uk.ac.starlink.votable.SerializerTest.exerciseStreamSerializer(SerializerTest.java:118)
[junit] at
uk.ac.starlink.votable.SerializerTest.testURLs(SerializerTest.java:84)
[junit] at
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
[junit] at
java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
[junit] at
java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
[junit] Caused by: org.xml.sax.SAXParseException; lineNumber: 8;
columnNumber: 47; stest10223147168984043305.dat (No such file or directory)
[junit] at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:155)
[junit] Caused by: java.io.FileNotFoundException:
stest10223147168984043305.dat (No such file or directory)
[junit] at java.base/java.io.FileInputStream.open0(Native Method)
[junit] at
java.base/java.io.FileInputStream.open(FileInputStream.java:219)
[junit] at
java.base/java.io.FileInputStream.<init>(FileInputStream.java:157)
[junit] at
java.base/java.io.FileInputStream.<init>(FileInputStream.java:112)
[junit] at
java.base/sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:86)
[junit] at
java.base/sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:184)
[junit] at
uk.ac.starlink.util.ContentCoding$1.getInputStream(ContentCoding.java:151)
[junit] at
uk.ac.starlink.util.URLDataSource.getRawInputStream(URLDataSource.java:98)
[junit] at
uk.ac.starlink.util.DataSource.initialise(DataSource.java:257)
[junit] at uk.ac.starlink.util.DataSource.getIntro(DataSource.java:372)
[junit] at
uk.ac.starlink.fits.FitsTableBuilder.makeStarTable(FitsTableBuilder.java:109)
[junit] at
uk.ac.starlink.votable.VOTableDOMBuilder$Worker.processFitsHref(VOTableDOMBuilder.java:146)
[junit]
[junit]
BUILD FAILED
/tmp/autopkgtest-lxc.rb2iyjjs/downtmp/build.CnE/src/build.xml:931: Test
uk.ac.starlink.votable.SerializerTest failed
Total time: 14 seconds
autopkgtest [18:59:06]: test command1: -----------------------]
-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 488 bytes
Desc: OpenPGP digital signature
URL: <http://alioth-lists.debian.net/pipermail/pkg-java-maintainers/attachments/20181030/bc751730/attachment-0001.sig>
More information about the pkg-java-maintainers
mailing list