Bug#1090200: cdk: FTBFS: [ERROR] Cannot find parent dependency org.openscience.cdk:cdk-app:pom:2.9
Santiago Vila
sanvila at debian.org
Mon Dec 16 17:49:25 GMT 2024
Package: src:cdk
Version: 1:2.9-2
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
mh_patchpoms -plibcdk-java --debian-build --keep-pom-version --maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
[ERROR] Cannot find parent dependency org.openscience.cdk:cdk-app:pom:2.9, use --no-parent option to resolve this issue or install the parent POM in the Maven repository
dh_auto_build
/usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US
OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release.
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[... snipped ...]
[INFO] from display/render/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-render ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/display/render/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-render ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 20 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java uses or overrides a deprecated API.
[INFO] /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: Recompile with -Xlint:deprecation for details.
[INFO] /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java uses unchecked or unsafe operations.
[INFO] /<<PKGBUILDDIR>>/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-render ---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-render ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-render ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-render ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-render ---
[INFO] Building jar: /<<PKGBUILDDIR>>/display/render/target/cdk-render-2.9.jar
[INFO]
[INFO] ----------------< org.openscience.cdk:cdk-renderbasic >-----------------
[INFO] Building cdk-renderbasic 2.9 [41/64]
[INFO] from display/renderbasic/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-renderbasic ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/display/renderbasic/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-renderbasic ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 45 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] /<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/LineTo.java: Some input files use or override a deprecated API.
[INFO] /<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/LineTo.java: Recompile with -Xlint:deprecation for details.
[INFO] /<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java: /<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java uses unchecked or unsafe operations.
[INFO] /<<PKGBUILDDIR>>/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-renderbasic ---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-renderbasic ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-renderbasic ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderbasic ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderbasic ---
[INFO] Building jar: /<<PKGBUILDDIR>>/display/renderbasic/target/cdk-renderbasic-2.9.jar
[INFO]
[INFO] -----------------< org.openscience.cdk:cdk-renderawt >------------------
[INFO] Building cdk-renderawt 2.9 [42/64]
[INFO] from display/renderawt/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-renderawt ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/display/renderawt/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-renderawt ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 2 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-renderawt ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-renderawt ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-renderawt ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderawt ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderawt ---
[INFO] Building jar: /<<PKGBUILDDIR>>/display/renderawt/target/cdk-renderawt-2.9.jar
[INFO]
[INFO] ----------------< org.openscience.cdk:cdk-renderextra >-----------------
[INFO] Building cdk-renderextra 2.9 [43/64]
[INFO] from display/renderextra/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-renderextra ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/display/renderextra/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-renderextra ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 20 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-renderextra ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-renderextra ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-renderextra ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-renderextra ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-renderextra ---
[INFO] Building jar: /<<PKGBUILDDIR>>/display/renderextra/target/cdk-renderextra-2.9.jar
[INFO]
[INFO] --------------------< org.openscience.cdk:cdk-misc >--------------------
[INFO] Building cdk-misc 2.9 [44/64]
[INFO] from misc/pom.xml
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-misc ---
[WARNING] Ignoring project type pom - supportedProjectTypes = [jar, bundle]
[INFO]
[INFO] ------------------< org.openscience.cdk:cdk-control >-------------------
[INFO] Building cdk-control 2.9 [45/64]
[INFO] from misc/control/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-control ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/misc/control/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-control ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 5 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-control ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-control ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-control ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-control ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-control ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/control/target/cdk-control-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-extra >--------------------
[INFO] Building cdk-extra 2.9 [46/64]
[INFO] from misc/extra/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-extra ---
[INFO] Copying 7 resources from src/main/resources to target/classes
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-extra ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 47 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] /<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java: Some input files use or override a deprecated API.
[INFO] /<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java: Recompile with -Xlint:deprecation for details.
[INFO] /<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java: Some input files use unchecked or unsafe operations.
[INFO] /<<PKGBUILDDIR>>/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-extra ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-extra ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-extra ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-extra ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-extra ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/extra/target/cdk-extra-2.9.jar
[INFO]
[INFO] --------------------< org.openscience.cdk:cdk-diff >--------------------
[INFO] Building cdk-diff 2.9 [47/64]
[INFO] from misc/diff/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-core:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-diff ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/misc/diff/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-diff ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 24 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO] /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java uses or overrides a deprecated API.
[INFO] /<<PKGBUILDDIR>>/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-diff ---
[WARNING] The artifact org.hamcrest:hamcrest-core:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-diff ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-diff ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-diff ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-diff ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/diff/target/cdk-diff-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-log4j >--------------------
[INFO] Building cdk-log4j 2.9 [48/64]
[INFO] from misc/log4j/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-log4j ---
[INFO] Copying 1 resource from src/main/resources to target/classes
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-log4j ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-log4j ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-log4j ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-log4j ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-log4j ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-log4j ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/log4j/target/cdk-log4j-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-slf4j >--------------------
[INFO] Building cdk-slf4j 2.9 [49/64]
[INFO] from misc/slf4j/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-slf4j ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/misc/slf4j/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-slf4j ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-slf4j ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-slf4j ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-slf4j ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-slf4j ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-slf4j ---
[INFO] Building jar: /<<PKGBUILDDIR>>/misc/slf4j/target/cdk-slf4j-2.9.jar
[INFO]
[INFO] ------------------< org.openscience.cdk:cdk-libiomd >-------------------
[INFO] Building cdk-libiomd 2.9 [50/64]
[INFO] from storage/libiomd/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-libiomd ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/storage/libiomd/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-libiomd ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 5 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-libiomd ---
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-libiomd ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-libiomd ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-libiomd ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-libiomd ---
[INFO] Building jar: /<<PKGBUILDDIR>>/storage/libiomd/target/cdk-libiomd-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-pdbcml >-------------------
[INFO] Building cdk-pdbcml 2.9 [51/64]
[INFO] from storage/pdbcml/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-pdbcml ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/storage/pdbcml/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-pdbcml ---
[INFO] Recompiling the module because of changed dependency.
[INFO] Compiling 1 source file with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-pdbcml ---
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-pdbcml ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-pdbcml ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-pdbcml ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-pdbcml ---
[INFO] Building jar: /<<PKGBUILDDIR>>/storage/pdbcml/target/cdk-pdbcml-2.9.jar
[INFO]
[INFO] --------------< org.openscience.cdk:cdk-jniinchi-support >--------------
[INFO] Building cdk-jniinchi-support 2.9 [52/64]
[INFO] from storage/jniinchi-support/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:resources (default-resources) @ cdk-jniinchi-support ---
[INFO] skip non existing resourceDirectory /<<PKGBUILDDIR>>/storage/jniinchi-support/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:compile (default-compile) @ cdk-jniinchi-support ---
[INFO] Recompiling the module because of changed source code.
[INFO] Compiling 2 source files with javac [debug target 1.8] to target/classes
[WARNING] bootstrap class path not set in conjunction with -source 8
[WARNING] source value 8 is obsolete and will be removed in a future release
[WARNING] target value 8 is obsolete and will be removed in a future release
[WARNING] To suppress warnings about obsolete options, use -Xlint:-options.
[INFO]
[INFO] --- maven-bundle-plugin:3.5.1:manifest (bundle-manifest) @ cdk-jniinchi-support ---
[WARNING] Manifest org.openscience.cdk:cdk-jniinchi-support:jar:2.9 : Unused Export-Package instructions: [org.openscience.*]
[INFO]
[INFO] --- maven-resources-plugin:3.3.1:testResources (default-testResources) @ cdk-jniinchi-support ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.13.0:testCompile (default-testCompile) @ cdk-jniinchi-support ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ cdk-jniinchi-support ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ cdk-jniinchi-support ---
[INFO] Building jar: /<<PKGBUILDDIR>>/storage/jniinchi-support/target/cdk-jniinchi-support-2.9.jar
[INFO]
[INFO] -------------------< org.openscience.cdk:cdk-inchi >--------------------
[INFO] Building cdk-inchi 2.9 [53/64]
[INFO] from storage/inchi/pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] The POM for io.github.dan2097:jna-inchi-core:jar:debian is missing, no dependency information available
[WARNING] The artifact org.hamcrest:hamcrest-all:jar:debian has been relocated to org.hamcrest:hamcrest:jar:debian
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for cdk 2.9:
[INFO]
[INFO] cdk ................................................ SUCCESS [ 0.392 s]
[INFO] cdk-base ........................................... SUCCESS [ 0.002 s]
[INFO] cdk-interfaces ..................................... SUCCESS [ 1.450 s]
[INFO] cdk-core ........................................... SUCCESS [ 1.403 s]
[INFO] cdk-standard ....................................... SUCCESS [ 0.915 s]
[INFO] cdk-atomtype ....................................... SUCCESS [ 0.100 s]
[INFO] cdk-valencycheck ................................... SUCCESS [ 0.141 s]
[INFO] cdk-data ........................................... SUCCESS [ 0.546 s]
[INFO] cdk-silent ......................................... SUCCESS [ 0.401 s]
[INFO] cdk-datadebug ...................................... SUCCESS [ 0.406 s]
[INFO] cdk-isomorphism .................................... SUCCESS [ 0.309 s]
[INFO] cdk-dict ........................................... SUCCESS [ 0.076 s]
[INFO] cdk-reaction ....................................... SUCCESS [ 0.245 s]
[INFO] cdk-storage ........................................ SUCCESS [ 0.003 s]
[INFO] cdk-ioformats ...................................... SUCCESS [ 0.187 s]
[INFO] cdk-ctab ........................................... SUCCESS [ 0.328 s]
[INFO] cdk-tool ........................................... SUCCESS [ 0.003 s]
[INFO] cdk-smarts ......................................... SUCCESS [ 0.143 s]
[INFO] cdk-formula ........................................ SUCCESS [ 0.178 s]
[INFO] cdk-descriptor ..................................... SUCCESS [ 0.003 s]
[INFO] cdk-fingerprint .................................... SUCCESS [ 0.268 s]
[INFO] cdk-cip ............................................ SUCCESS [ 0.082 s]
[INFO] cdk-signature ...................................... SUCCESS [ 0.079 s]
[INFO] cdk-qsar ........................................... SUCCESS [ 0.063 s]
[INFO] cdk-charges ........................................ SUCCESS [ 0.100 s]
[INFO] cdk-forcefield ..................................... SUCCESS [ 0.165 s]
[INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.177 s]
[INFO] cdk-qsarbond ....................................... SUCCESS [ 0.064 s]
[INFO] cdk-io ............................................. SUCCESS [ 0.365 s]
[INFO] cdk-libiocml ....................................... SUCCESS [ 0.139 s]
[INFO] cdk-qsarcml ........................................ SUCCESS [ 0.084 s]
[INFO] cdk-smiles ......................................... SUCCESS [ 0.218 s]
[INFO] cdk-hash ........................................... SUCCESS [ 0.118 s]
[INFO] cdk-fragment ....................................... SUCCESS [ 0.075 s]
[INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.342 s]
[INFO] cdk-pdb ............................................ SUCCESS [ 0.191 s]
[INFO] cdk-qsarprotein .................................... SUCCESS [ 0.082 s]
[INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.038 s]
[INFO] cdk-display ........................................ SUCCESS [ 0.003 s]
[INFO] cdk-render ......................................... SUCCESS [ 0.088 s]
[INFO] cdk-renderbasic .................................... SUCCESS [ 0.261 s]
[INFO] cdk-renderawt ...................................... SUCCESS [ 0.078 s]
[INFO] cdk-renderextra .................................... SUCCESS [ 0.128 s]
[INFO] cdk-misc ........................................... SUCCESS [ 0.003 s]
[INFO] cdk-control ........................................ SUCCESS [ 0.039 s]
[INFO] cdk-extra .......................................... SUCCESS [ 0.246 s]
[INFO] cdk-diff ........................................... SUCCESS [ 0.080 s]
[INFO] cdk-log4j .......................................... SUCCESS [ 0.056 s]
[INFO] cdk-slf4j .......................................... SUCCESS [ 0.046 s]
[INFO] cdk-libiomd ........................................ SUCCESS [ 0.080 s]
[INFO] cdk-pdbcml ......................................... SUCCESS [ 0.072 s]
[INFO] cdk-jniinchi-support ............................... SUCCESS [ 0.034 s]
[INFO] cdk-inchi .......................................... FAILURE [ 0.009 s]
[INFO] cdk-sdg ............................................ SKIPPED
[INFO] cdk-builder3d ...................................... SKIPPED
[INFO] cdk-builder3dtools ................................. SKIPPED
[INFO] cdk-group .......................................... SKIPPED
[INFO] cdk-pcore .......................................... SKIPPED
[INFO] cdk-structgen ...................................... SKIPPED
[INFO] cdk-tautomer ....................................... SKIPPED
[INFO] cdk-model .......................................... SKIPPED
[INFO] cdk-legacy ......................................... SKIPPED
[INFO] cdk-app ............................................ SKIPPED
[INFO] cdk-depict ......................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11.396 s
[INFO] Finished at: 2024-12-14T17:27:55Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project cdk-inchi: Could not resolve dependencies for project org.openscience.cdk:cdk-inchi:jar:2.9: Cannot access ossrh (https://s01.oss.sonatype.org/content/repositories/snapshots) in offline mode and the artifact io.github.dan2097:jna-inchi-core:jar:debian has not been downloaded from it before. -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <args> -rf :cdk-inchi
dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202412/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
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