Processed: forcibly merging 1108566 1131603

[Debian Bug Tracking System]

Processing commands for control at bugs.debian.org:

> forcemerge 1108566  1131603
Bug #1108566 [src:gradle] gradle:  FTBFS with default Java 25
Bug #1131584 [src:gradle] picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
Bug #1131570 [src:gradle] adql: FTBFS: ./ADQLLib/src/adql/parser/ADQLParser.java:66: error: heading used out of sequence: <H3>, compared to implicit preceding heading: <H1>
Removed indication that 1131570 affects src:vdjtools, src:libjdom2-intellij-java, src:darcula, src:barclay, src:adql, src:igv, src:milib, src:dom4j, src:libhttp-nio-java, src:opentest4j, src:xgboost-predictor-java, src:htsjdk, src:gkl, src:capsule-nextflow, src:gatk-fermilite, src:android-platform-tools-apksig, src:libhamcrest-java, and src:capsule-maven-nextflow
Added indication that 1131570 affects src:picard-tools
Removed indication that 1131603 affects src:capsule-nextflow, src:gatk-fermilite, src:gkl, src:capsule-maven-nextflow, src:libhamcrest-java, src:android-platform-tools-apksig, src:adql, src:igv, src:darcula, src:barclay, src:milib, src:vdjtools, src:libjdom2-intellij-java, src:xgboost-predictor-java, src:opentest4j, src:htsjdk, src:dom4j, and src:libhttp-nio-java
Added indication that 1131603 affects src:picard-tools
Added tag(s) patch.
Added tag(s) patch.
Bug #1131584 [src:gradle] picard-tools: FTBFS: Test: Test method testCleanSam[1](simple_overhang.sam, 99M1S)(picard.sam.CleanSamTest) produced standard out/err: Ignoring SAM validation error: ERROR::CIGAR_MAPS_OFF_REFERENCE:Read name simple_overhang, Read CIGAR M operator maps off end of reference
Bug #1131603 [src:gradle] gradle: Several packages FTBFS with "java.lang.UnsupportedOperationException: Setting a Security Manager is not supported"
Merged 1108566 1131570 1131584 1131603
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1108566: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1108566
1131570: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131570
1131584: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131584
1131603: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1131603
Debian Bug Tracking System
Contact owner at bugs.debian.org with problems