Bug#904735: libbio-samtools-perl: FTBFS: recompile with -fPIC

[Niko Tyni]

Source: libbio-samtools-perl
Version: 1.43-1
Severity: serious
Tags: ftbfs
Control: block 902557 with -1

This package fails to build on sid/amd64:

  x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L/usr/lib -lbam -lpthread -lz
  /usr/bin/ld: /usr/lib/libbam.a(bam_aux.o): relocation R_X86_64_PC32 against symbol `bam_verbose' can not be used when making a shared object; recompile with -fPIC
  /usr/bin/ld: final link failed: bad value
  collect2: error: ld returned 1 exit status
  error building blib/arch/auto/Bio/DB/Sam/Sam.so from lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o at /usr/share/perl/5.26/ExtUtils/CBuilder/Base.pm line 321.
  dh_auto_build: perl Build returned exit code 2
  make: *** [debian/rules:4: build] Error 2
  dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
  
It seems to have built OK on test.reproducible-builds.org on 2018-07-12,
so could be a binutils regression rather than libbam-dev?

-- 
Niko Tyni   ntyni at debian.org