[DRE-maint] Bug#674337: ruby-bio: FTBFS: test failed
Lucas Nussbaum
lucas at lucas-nussbaum.net
Thu May 24 09:57:26 UTC 2012
Source: ruby-bio
Version: 1.4.2-2
Severity: serious
Tags: wheezy sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20120524 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> dh_auto_install
> Entering dh_ruby --install
> install -d /«PKGBUILDDIR»/debian/ruby-bio/usr/bin
> install -D -m755 bin/br_bioflat.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_bioflat.rb
> install -D -m755 bin/bioruby /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/bioruby
> install -D -m755 bin/br_biogetseq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biogetseq.rb
> install -D -m755 bin/br_biofetch.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biofetch.rb
> install -D -m755 bin/br_pmfetch.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_pmfetch.rb
> install -d /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby
> install -D -m644 lib/bio/shell/object.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/object.rb
> install -D -m644 lib/bio/shell/irb.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/irb.rb
> install -D -m644 lib/bio/shell/setup.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/setup.rb
> install -D -m644 lib/bio/shell/web.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/web.rb
> install -D -m644 lib/bio/shell/interface.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/interface.rb
> install -D -m644 lib/bio/shell/core.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/core.rb
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png
> install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb
> install -D -m644 lib/bio/shell/plugin/entry.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/entry.rb
> install -D -m644 lib/bio/shell/plugin/das.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/das.rb
> install -D -m644 lib/bio/shell/plugin/flatfile.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/flatfile.rb
> install -D -m644 lib/bio/shell/plugin/seq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/seq.rb
> install -D -m644 lib/bio/shell/plugin/togows.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/togows.rb
> install -D -m644 lib/bio/shell/plugin/obda.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/obda.rb
> install -D -m644 lib/bio/shell/plugin/midi.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/midi.rb
> install -D -m644 lib/bio/shell/plugin/ncbirest.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/ncbirest.rb
> install -D -m644 lib/bio/shell/plugin/codon.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/codon.rb
> install -D -m644 lib/bio/shell/plugin/soap.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/soap.rb
> install -D -m644 lib/bio/shell/plugin/emboss.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/emboss.rb
> install -D -m644 lib/bio/shell/plugin/blast.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/blast.rb
> install -D -m644 lib/bio/shell/plugin/keggapi.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/keggapi.rb
> install -D -m644 lib/bio/shell/plugin/psort.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/psort.rb
> install -D -m644 lib/bio/shell/demo.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/demo.rb
> install -D -m644 lib/bio/shell/script.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/script.rb
> install -D -m644 lib/bio/appl/paml/codeml.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml.rb
> install -D -m644 lib/bio/appl/paml/common_report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common_report.rb
> install -D -m644 lib/bio/appl/paml/codeml/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/report.rb
> install -D -m644 lib/bio/appl/paml/codeml/rates.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/rates.rb
> install -D -m644 lib/bio/appl/paml/yn00.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00.rb
> install -D -m644 lib/bio/appl/paml/baseml/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml/report.rb
> install -D -m644 lib/bio/appl/paml/yn00/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/report.rb
> install -D -m644 lib/bio/appl/paml/common.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common.rb
> install -D -m644 lib/bio/appl/paml/baseml.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml.rb
> install -D -m644 lib/bio/appl/meme/mast/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/report.rb
> install -D -m644 lib/bio/appl/meme/mast.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast.rb
> install -D -m644 lib/bio/appl/meme/motif.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/motif.rb
> install -D -m644 lib/bio/appl/mafft/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft/report.rb
> install -D -m644 lib/bio/appl/probcons.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/probcons.rb
> install -D -m644 lib/bio/appl/blat/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blat/report.rb
> install -D -m644 lib/bio/appl/blast/ncbioptions.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ncbioptions.rb
> install -D -m644 lib/bio/appl/blast/remote.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/remote.rb
> install -D -m644 lib/bio/appl/blast/wublast.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/wublast.rb
> install -D -m644 lib/bio/appl/blast/rexml.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rexml.rb
> install -D -m644 lib/bio/appl/blast/format8.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format8.rb
> install -D -m644 lib/bio/appl/blast/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/report.rb
> install -D -m644 lib/bio/appl/blast/ddbj.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ddbj.rb
> install -D -m644 lib/bio/appl/blast/format0.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format0.rb
> install -D -m644 lib/bio/appl/blast/xmlparser.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/xmlparser.rb
> install -D -m644 lib/bio/appl/blast/genomenet.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/genomenet.rb
> install -D -m644 lib/bio/appl/blast/rpsblast.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rpsblast.rb
> install -D -m644 lib/bio/appl/fasta.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta.rb
> install -D -m644 lib/bio/appl/fasta/format10.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta/format10.rb
> install -D -m644 lib/bio/appl/clustalw.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw.rb
> install -D -m644 lib/bio/appl/sim4.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4.rb
> install -D -m644 lib/bio/appl/tmhmm/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/report.rb
> install -D -m644 lib/bio/appl/muscle.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/muscle.rb
> install -D -m644 lib/bio/appl/tcoffee.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tcoffee.rb
> install -D -m644 lib/bio/appl/targetp/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/targetp/report.rb
> install -D -m644 lib/bio/appl/psort/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort/report.rb
> install -D -m644 lib/bio/appl/genscan/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/genscan/report.rb
> install -D -m644 lib/bio/appl/iprscan/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/report.rb
> install -D -m644 lib/bio/appl/clustalw/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw/report.rb
> install -D -m644 lib/bio/appl/spidey/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/spidey/report.rb
> install -D -m644 lib/bio/appl/mafft.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft.rb
> install -D -m644 lib/bio/appl/hmmer/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/report.rb
> install -D -m644 lib/bio/appl/bl2seq/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/report.rb
> install -D -m644 lib/bio/appl/gcg/seq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/seq.rb
> install -D -m644 lib/bio/appl/gcg/msf.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/msf.rb
> install -D -m644 lib/bio/appl/emboss.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/emboss.rb
> install -D -m644 lib/bio/appl/phylip/distance_matrix.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/distance_matrix.rb
> install -D -m644 lib/bio/appl/phylip/alignment.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/alignment.rb
> install -D -m644 lib/bio/appl/blast.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast.rb
> install -D -m644 lib/bio/appl/sim4/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4/report.rb
> install -D -m644 lib/bio/appl/pts1.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/pts1.rb
> install -D -m644 lib/bio/appl/hmmer.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer.rb
> install -D -m644 lib/bio/appl/psort.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort.rb
> install -D -m644 lib/bio/appl/sosui/report.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sosui/report.rb
> install -D -m644 lib/bio/reference.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/reference.rb
> install -D -m644 lib/bio/shell.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell.rb
> install -D -m644 lib/bio/pathway.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/pathway.rb
> install -D -m644 lib/bio/data/codontable.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb
> install -D -m644 lib/bio/data/aa.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/aa.rb
> install -D -m644 lib/bio/data/na.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/na.rb
> install -D -m644 lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
> install -D -m644 lib/bio/db/sanger_chromatogram/scf.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/scf.rb
> install -D -m644 lib/bio/db/sanger_chromatogram/chromatogram.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb
> install -D -m644 lib/bio/db/sanger_chromatogram/abif.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/abif.rb
> install -D -m644 lib/bio/db/nexus.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb
> install -D -m644 lib/bio/db/aaindex.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/aaindex.rb
> install -D -m644 lib/bio/db/phyloxml/phyloxml_writer.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_writer.rb
> install -D -m644 lib/bio/db/phyloxml/phyloxml_parser.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_parser.rb
> install -D -m644 lib/bio/db/phyloxml/phyloxml.xsd /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml.xsd
> install -D -m644 lib/bio/db/phyloxml/phyloxml_elements.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb
> install -D -m644 lib/bio/db/litdb.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/litdb.rb
> install -D -m644 lib/bio/db/lasergene.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/lasergene.rb
> install -D -m644 lib/bio/db/kegg/drug.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/drug.rb
> install -D -m644 lib/bio/db/kegg/expression.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/expression.rb
> install -D -m644 lib/bio/db/kegg/compound.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/compound.rb
> install -D -m644 lib/bio/db/kegg/brite.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/brite.rb
> install -D -m644 lib/bio/db/kegg/pathway.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/pathway.rb
> install -D -m644 lib/bio/db/kegg/keggtab.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/keggtab.rb
> install -D -m644 lib/bio/db/kegg/glycan.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/glycan.rb
> install -D -m644 lib/bio/db/kegg/enzyme.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/enzyme.rb
> install -D -m644 lib/bio/db/kegg/kgml.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/kgml.rb
> install -D -m644 lib/bio/db/kegg/genome.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genome.rb
> install -D -m644 lib/bio/db/kegg/genes.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genes.rb
> install -D -m644 lib/bio/db/kegg/module.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/module.rb
> install -D -m644 lib/bio/db/kegg/taxonomy.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/taxonomy.rb
> install -D -m644 lib/bio/db/kegg/orthology.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/orthology.rb
> install -D -m644 lib/bio/db/kegg/reaction.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/reaction.rb
> install -D -m644 lib/bio/db/kegg/common.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/common.rb
> install -D -m644 lib/bio/db/transfac.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/transfac.rb
> install -D -m644 lib/bio/db/biosql/sequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/sequence.rb
> install -D -m644 lib/bio/db/biosql/biosql_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/biosql_to_biosequence.rb
> install -D -m644 lib/bio/db/gff.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/gff.rb
> install -D -m644 lib/bio/db/go.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/go.rb
> install -D -m644 lib/bio/db/fasta.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb
> install -D -m644 lib/bio/db/fasta/format_qual.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_qual.rb
> install -D -m644 lib/bio/db/fasta/format_fasta.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_fasta.rb
> install -D -m644 lib/bio/db/fasta/defline.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/defline.rb
> install -D -m644 lib/bio/db/fasta/qual_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual_to_biosequence.rb
> install -D -m644 lib/bio/db/fasta/qual.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual.rb
> install -D -m644 lib/bio/db/fasta/fasta_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/fasta_to_biosequence.rb
> install -D -m644 lib/bio/db/newick.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/newick.rb
> install -D -m644 lib/bio/db/pdb.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb
> install -D -m644 lib/bio/db/genbank/genbank_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb
> install -D -m644 lib/bio/db/genbank/refseq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb
> install -D -m644 lib/bio/db/genbank/genbank.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb
> install -D -m644 lib/bio/db/genbank/ddbj.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb
> install -D -m644 lib/bio/db/genbank/common.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb
> install -D -m644 lib/bio/db/genbank/genpept.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb
> install -D -m644 lib/bio/db/genbank/format_genbank.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb
> install -D -m644 lib/bio/db/fantom.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb
> install -D -m644 lib/bio/db/soft.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/soft.rb
> install -D -m644 lib/bio/db/embl/swissprot.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb
> install -D -m644 lib/bio/db/embl/embl_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb
> install -D -m644 lib/bio/db/embl/common.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb
> install -D -m644 lib/bio/db/embl/embl.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb
> install -D -m644 lib/bio/db/embl/format_embl.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb
> install -D -m644 lib/bio/db/embl/sptr.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb
> install -D -m644 lib/bio/db/embl/uniprot.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb
> install -D -m644 lib/bio/db/embl/trembl.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb
> install -D -m644 lib/bio/db/medline.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/medline.rb
> install -D -m644 lib/bio/db/fastq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb
> install -D -m644 lib/bio/db/prosite.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb
> install -D -m644 lib/bio/db/fastq/format_fastq.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb
> install -D -m644 lib/bio/db/fastq/fastq_to_biosequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb
> install -D -m644 lib/bio/db/nbrf.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb
> install -D -m644 lib/bio/db/pdb/chemicalcomponent.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb
> install -D -m644 lib/bio/db/pdb/chain.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb
> install -D -m644 lib/bio/db/pdb/pdb.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb
> install -D -m644 lib/bio/db/pdb/atom.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb
> install -D -m644 lib/bio/db/pdb/utils.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb
> install -D -m644 lib/bio/db/pdb/residue.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb
> install -D -m644 lib/bio/db/pdb/model.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb
> install -D -m644 lib/bio/db/rebase.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/rebase.rb
> install -D -m644 lib/bio/map.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/map.rb
> install -D -m644 lib/bio/io/fastacmd.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fastacmd.rb
> install -D -m644 lib/bio/io/dbget.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/dbget.rb
> install -D -m644 lib/bio/io/biosql/ar-biosql.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/ar-biosql.rb
> install -D -m644 lib/bio/io/biosql/biosql.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/biosql.rb
> install -D -m644 lib/bio/io/biosql/config/database.yml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/config/database.yml
> install -D -m644 lib/bio/io/ddbjxml.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjxml.rb
> install -D -m644 lib/bio/io/das.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/das.rb
> install -D -m644 lib/bio/io/hinv.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb
> install -D -m644 lib/bio/io/flatfile.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile.rb
> install -D -m644 lib/bio/io/flatfile/index.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/index.rb
> install -D -m644 lib/bio/io/flatfile/autodetection.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/autodetection.rb
> install -D -m644 lib/bio/io/flatfile/buffer.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/buffer.rb
> install -D -m644 lib/bio/io/flatfile/splitter.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/splitter.rb
> install -D -m644 lib/bio/io/flatfile/indexer.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/indexer.rb
> install -D -m644 lib/bio/io/flatfile/bdb.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/bdb.rb
> install -D -m644 lib/bio/io/ebisoap.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ebisoap.rb
> install -D -m644 lib/bio/io/ddbjrest.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjrest.rb
> install -D -m644 lib/bio/io/registry.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/registry.rb
> install -D -m644 lib/bio/io/togows.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/togows.rb
> install -D -m644 lib/bio/io/fetch.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb
> install -D -m644 lib/bio/io/sql.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/sql.rb
> install -D -m644 lib/bio/io/ncbisoap.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbisoap.rb
> install -D -m644 lib/bio/io/ncbirest.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbirest.rb
> install -D -m644 lib/bio/io/soapwsdl.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/soapwsdl.rb
> install -D -m644 lib/bio/io/ensembl.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ensembl.rb
> install -D -m644 lib/bio/io/higet.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/higet.rb
> install -D -m644 lib/bio/io/pubmed.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/pubmed.rb
> install -D -m644 lib/bio/io/keggapi.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/keggapi.rb
> install -D -m644 lib/bio/sequence.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence.rb
> install -D -m644 lib/bio/db.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db.rb
> install -D -m644 lib/bio/alignment.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/alignment.rb
> install -D -m644 lib/bio/location.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/location.rb
> install -D -m644 lib/bio/tree.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/tree.rb
> install -D -m644 lib/bio/feature.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/feature.rb
> install -D -m644 lib/bio/sequence/sequence_masker.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/sequence_masker.rb
> install -D -m644 lib/bio/sequence/format.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format.rb
> install -D -m644 lib/bio/sequence/generic.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/generic.rb
> install -D -m644 lib/bio/sequence/compat.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/compat.rb
> install -D -m644 lib/bio/sequence/adapter.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/adapter.rb
> install -D -m644 lib/bio/sequence/quality_score.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/quality_score.rb
> install -D -m644 lib/bio/sequence/aa.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/aa.rb
> install -D -m644 lib/bio/sequence/common.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/common.rb
> install -D -m644 lib/bio/sequence/dblink.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/dblink.rb
> install -D -m644 lib/bio/sequence/na.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/na.rb
> install -D -m644 lib/bio/sequence/format_raw.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format_raw.rb
> install -D -m644 lib/bio/version.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/version.rb
> install -D -m644 lib/bio/command.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/command.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded.rb
> install -D -m644 lib/bio/util/restriction_enzyme/single_strand_complement.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand_complement.rb
> install -D -m644 lib/bio/util/restriction_enzyme/cut_symbol.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/cut_symbol.rb
> install -D -m644 lib/bio/util/restriction_enzyme/sorted_num_array.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/sorted_num_array.rb
> install -D -m644 lib/bio/util/restriction_enzyme/analysis_basic.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis_basic.rb
> install -D -m644 lib/bio/util/restriction_enzyme/analysis.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis.rb
> install -D -m644 lib/bio/util/restriction_enzyme/dense_int_array.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/dense_int_array.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
> install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb
> install -D -m644 lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
> install -D -m644 lib/bio/util/restriction_enzyme/single_strand.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/cut_range.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/cut_ranges.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb
> install -D -m644 lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb
> install -D -m644 lib/bio/util/restriction_enzyme/enzymes.yaml /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml
> install -D -m644 lib/bio/util/restriction_enzyme/string_formatting.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb
> install -D -m644 lib/bio/util/restriction_enzyme.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb
> install -D -m644 lib/bio/util/sirna.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/sirna.rb
> install -D -m644 lib/bio/util/contingency_table.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb
> install -D -m644 lib/bio/util/color_scheme.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb
> install -D -m644 lib/bio/util/color_scheme/zappo.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb
> install -D -m644 lib/bio/util/color_scheme/nucleotide.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb
> install -D -m644 lib/bio/util/color_scheme/taylor.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb
> install -D -m644 lib/bio/util/color_scheme/turn.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/turn.rb
> install -D -m644 lib/bio/util/color_scheme/strand.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/strand.rb
> install -D -m644 lib/bio/util/color_scheme/helix.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb
> install -D -m644 lib/bio/util/color_scheme/hydropathy.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb
> install -D -m644 lib/bio/util/color_scheme/buried.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb
> install -D -m644 lib/bio/compat/references.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/references.rb
> install -D -m644 lib/bio/compat/features.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/features.rb
> install -D -m644 lib/bio.rb /«PKGBUILDDIR»/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio.rb
> Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_pmfetch.rb
> Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biofetch.rb
> Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_biogetseq.rb
> Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/bioruby
> Rewriting shebang line of /«PKGBUILDDIR»/debian/ruby-bio/usr/bin/br_bioflat.rb
> /usr/bin/ruby1.8 -I/usr/lib/ruby/vendor_ruby /usr/lib/ruby/vendor_ruby/gem2deb/test_runner.rb
> Loaded suite debian/ruby-tests
> Started
> .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
> Finished in 62.485849 seconds.
>
> 1) Failure:
> test_dataset(Bio::TestSOFT) [./test/unit/bio/db/test_soft.rb:93]:
> <["GDS100_8",
> "GDS100_7",
> "GDS100_6",
> "GDS100_5",
> "GDS100_4",
> "GDS100_3",
> "GDS100_2",
> "GDS100_1"]> expected but was
> <["GDS100_1",
> "GDS100_2",
> "GDS100_3",
> "GDS100_4",
> "GDS100_5",
> "GDS100_6",
> "GDS100_7",
> "GDS100_8"]>.
>
> 3601 tests, 20925 assertions, 1 failures, 0 errors
> ERROR: Test "ruby1.8" failed. Exiting.
> dh_auto_install: dh_ruby --install /«PKGBUILDDIR»/debian/tmp returned exit code 1
> make[1]: *** [override_dh_auto_install] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2012/05/24/ruby-bio_1.4.2-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
More information about the Pkg-ruby-extras-maintainers
mailing list