[DRE-maint] Bug#944596: gitlab: Upgrading to 12.2.9-1 fails
David L
er_maqui at darkbolt.net
Fri Nov 15 11:59:37 GMT 2019
Package: gitlab
Version: 12.2.9-1+fto10+1
Followup-For: Bug #944596
More info about the bug:
- Deleting file active_record_mysql_timestamp.rb, fails on active_record_mysql_timestamp.rb, because the same error, "undefined method mysql?".
Error MSG:
NoMethodError: undefined method `mysql?' for Gitlab::Database:Module
/usr/share/gitlab/config/initializers/ar_mysql_jsonb_support.rb:9:in `<top (required)>'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:285:in `load'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:285:in `block in load'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:257:in `load_dependency'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:285:in `load'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/engine.rb:657:in `block in load_config_initializer'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/notifications.rb:170:in `instrument'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/engine.rb:656:in `load_config_initializer'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/engine.rb:614:in `block (2 levels) in <class:Engine>'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/engine.rb:613:in `each'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/engine.rb:613:in `block in <class:Engine>'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:32:in `instance_exec'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:32:in `run'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:61:in `block in run_initializers'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:50:in `each'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:50:in `tsort_each_child'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/initializable.rb:60:in `run_initializers'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/application.rb:361:in `initialize!'
/usr/share/gitlab/config/environment.rb:6:in `<top (required)>'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:291:in `require'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:291:in `block in require'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:257:in `load_dependency'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies.rb:291:in `require'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/application.rb:337:in `require_environment!'
/usr/share/rubygems-integration/all/gems/railties-5.2.3/lib/rails/application.rb:520:in `block in run_tasks_blocks'
Tasks: TOP => db:migrate => db:load_config => environment
Deleting this file too, continue on db:migrate task, but this one fails too.
Error MSG:
(some output ommited)
== 20190723105753 AddIndexOnIdentitiesLowerExternUidAndProvider: migrating ====
-- transaction_open?()
-> 0.0000s
-- index_exists?(:identities, "lower(extern_uid), provider", {:name=>"index_on_identities_lower_extern_uid_and_provider", :algorithm=>:concurrently})
-> 0.0033s
-- execute("SET statement_timeout TO 0")
-> 0.0005s
-- add_index(:identities, "lower(extern_uid), provider", {:name=>"index_on_identities_lower_extern_uid_and_provider", :algorithm=>:concurrently})
-- execute("RESET ALL")
-> 0.0004s
rake aborted!
StandardError: An error has occurred, all later migrations canceled:
PG::UndefinedColumn: ERROR: column "lower(extern_uid), provider" does not exist
: CREATE INDEX CONCURRENTLY "index_on_identities_lower_extern_uid_and_provider" ON "identities" ("lower(extern_uid), provider" )
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:75:in `async_exec'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:75:in `block (2 levels) in execute'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies/interlock.rb:48:in `block in permit_concurrent_loads'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/concurrency/share_lock.rb:187:in `yield_shares'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/dependencies/interlock.rb:47:in `permit_concurrent_loads'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:74:in `block in execute'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/abstract_adapter.rb:581:in `block (2 levels) in log'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/abstract_adapter.rb:580:in `block in log'
/usr/share/rubygems-integration/all/gems/activesupport-5.2.3/lib/active_support/notifications/instrumenter.rb:23:in `instrument'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/abstract_adapter.rb:571:in `log'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/postgresql/database_statements.rb:73:in `execute'
/usr/share/gitlab/config/initializers/postgresql_opclasses_support.rb:149:in `add_index'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:871:in `block in method_missing'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:840:in `block in say_with_time'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:840:in `say_with_time'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:860:in `method_missing'
/usr/share/gitlab/lib/gitlab/database/migration_helpers.rb:93:in `block in add_concurrent_index'
/usr/share/gitlab/lib/gitlab/database/migration_helpers.rb:252:in `disable_statement_timeout'
/usr/share/gitlab/lib/gitlab/database/migration_helpers.rb:92:in `add_concurrent_index'
/usr/share/gitlab/db/post_migrate/20190723105753_add_index_on_identities_lower_extern_uid_and_provider.rb:13:in `up'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:817:in `exec_migration'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:798:in `block (2 levels) in migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:797:in `block in migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/connection_adapters/abstract/connection_pool.rb:416:in `with_connection'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:796:in `migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:977:in `migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1292:in `block in execute_migration_in_transaction'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1345:in `ddl_transaction'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1291:in `execute_migration_in_transaction'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1263:in `block in migrate_without_lock'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1262:in `each'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1262:in `migrate_without_lock'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1210:in `block in migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1363:in `with_advisory_lock'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1210:in `migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1036:in `up'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/migration.rb:1011:in `migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/tasks/database_tasks.rb:172:in `migrate'
/usr/share/rubygems-integration/all/gems/activerecord-5.2.3/lib/active_record/railties/databases.rake:60:in `block (2 levels) in <top (required)>'
-- System Information:
Debian Release: bullseye/sid
APT prefers buster-fasttrack
APT policy: (500, 'buster-fasttrack'), (500, 'buster-backports'), (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.62-mod-std-ipv6-64-rescue (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_GB:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages gitlab depends on:
ii asciidoctor 2.0.10-2
ii bc 1.07.1-2+b2
ii bundler 1.17.3-3
ii bzip2 1.0.8-2
ii dbconfig-pgsql 2.0.13
ii debconf [debconf-2.0] 1.5.73
ii exim4-daemon-light [mail-transport-agent] 4.92.3-1
ii gitlab-common 12.2.9-1+fto10+1
ii gitlab-workhorse 8.8.1+debian-1~bpo10+1
ii libjs-bootstrap4 [node-bootstrap] 4.3.1+dfsg2-4
ii libjs-pdf 1.5.188+dfsg-1~bpo10+1
ii libjs-popper.js [node-popper.js] 1.14.6+ds2-2
ii libjs-uglify 2.8.29-6
ii lsb-base 11.1.0
ii nginx 1.16.1-2
ii nginx-full [nginx] 1.16.1-2
ii node-autosize 4.0.2~dfsg1-3
ii node-axios 0.19.0+dfsg-2
ii node-brace-expansion 1.1.8-1
ii node-cache-loader 2.0.1-2
ii node-chart.js 2.7.3+dfsg-5
ii node-core-js 2.4.1-2
ii node-css-loader 1.0.1-1
ii node-d3 4.13.0-10
ii node-d3-array 1.2.4-2
ii node-d3-axis 1.0.12-2
ii node-d3-brush 1.0.6-3
ii node-d3-ease 1.0.5-2
ii node-d3-scale 1.0.7-6
ii node-d3-selection 1.4.0-5
ii node-d3-shape 1.3.5-2
ii node-d3-time 1.0.11-3
ii node-d3-time-format 2.1.3-2
ii node-d3-transition 1.2.0-4
ii node-dateformat 3.0.0-1
ii node-exports-loader 0.7.0-2
ii node-file-loader 3.0.1-1
ii node-fuzzaldrin-plus 0.5.0+dfsg-3
ii node-glob 7.1.3-2
ii node-imports-loader 0.8.0-2
ii node-jed 1.1.1-1
ii node-jquery 3.4.0+dfsg-1
ii node-jquery-ujs 1.2.2-2
ii node-jquery.waitforimages 2.4.0+ds-1
ii node-js-cookie 2.2.0-2
ii node-jszip 3.2.2+dfsg-1
ii node-jszip-utils 0.0.2+dfsg-1
ii node-mousetrap 1.6.1+ds-1
ii node-pikaday 1.8.0-1
ii node-raven-js 3.22.1+dfsg-2
ii node-raw-loader 1.0.0-2
ii node-three-orbit-controls 82.1.0-2
ii node-three-stl-loader 1.0.6-2
ii node-timeago.js 3.0.2+dfsg-5
ii node-underscore 1.9.1~dfsg-1
ii node-url-loader 1.1.2-1
ii node-vue-resource 1.5.1+dfsg-5
ii node-webpack-stats-plugin 0.2.1-1
ii node-worker-loader 2.0.0-2
ii nodejs 10.17.0~dfsg-2
ii openssh-client 1:8.1p1-1
ii postgresql-client 12+209
ii postgresql-client-10 [postgresql-client] 10.5-1
ii postgresql-client-11 [postgresql-client] 11.5-3sid2
ii postgresql-client-12 [postgresql-client] 12.0-1+b1
ii postgresql-contrib 12+209
ii puma 3.12.0-2+b1
ii rake 12.3.3-1
ii redis-server 5:5.0.6-1
ii ruby 1:2.5.2
ii ruby-ace-rails-ap 4.1.1-1
ii ruby-acme-client 2.0.3-2
ii ruby-activerecord-explain-analyze 0.1.0-2
ii ruby-acts-as-taggable-on 6.0.0-3
ii ruby-addressable 2.7.0-1
ii ruby-akismet 2.0.0-1
ii ruby-apollo-upload-server 2.0.0~beta3-1
ii ruby-asana 0.8.1-2
ii ruby-asciidoctor-include-ext 0.3.1-2
ii ruby-asciidoctor-plantuml 0.0.9-1
ii ruby-attr-encrypted 3.1.0-2
ii ruby-babosa 1.0.2-2
ii ruby-base32 0.3.2-4
ii ruby-batch-loader 1.4.1+dfsg.1-1
ii ruby-bcrypt-pbkdf 1.0.1-1
ii ruby-benchmark-ips 2.7.2-1~bpo10+1
ii ruby-benchmark-memory 0.1.2-2
ii ruby-bootsnap 1.3.0-1+b1
ii ruby-bootstrap-form 4.2.0-2
ii ruby-browser 2.5.3-1
ii ruby-carrierwave 1.3.1-2
ii ruby-charlock-holmes 0.7.6-1
ii ruby-chronic 0.10.2-3
ii ruby-chronic-duration 0.10.6-1
ii ruby-commonmarker 0.17.9-1+b1
ii ruby-connection-pool 2.2.2-1
ii ruby-contracts 0.16.0-1
ii ruby-creole 0.5.0-2
ii ruby-default-value-for 3.2.0-1~bpo10+1
ii ruby-device-detector 1.0.1-2
ii ruby-devise 4.6.2-1~bpo10+1
ii ruby-devise-two-factor 3.0.3-2
ii ruby-diffy 3.2.1-1
ii ruby-discordrb-webhooks 3.3.0-1
ii ruby-doorkeeper 4.4.2-1
ii ruby-doorkeeper-openid-connect 1.5.5-1
ii ruby-ed25519 1.2.4-1+b1
ii ruby-email-reply-trimmer 0.1.6-1
ii ruby-escape-utils 1.2.1-1+b1
ii ruby-excon 0.60.0-1
ii ruby-faraday 0.15.4-3
ii ruby-fast-blank 1.0.0-1+b1
ii ruby-flipper [ruby-flipper-active-support-cache-sto 0.13.0-3
pn ruby-flipper-active-record <none>
ii ruby-flowdock 0.7.1-1
ii ruby-fog-aliyun 0.3.2-3
ii ruby-fog-aws 3.5.2-1
ii ruby-fog-core 2.1.0-3
ii ruby-fog-google 1.8.2-2
ii ruby-fog-local 0.6.0-1
ii ruby-fog-openstack 1.0.8-2
ii ruby-fog-rackspace 0.1.6-2
ii ruby-fogbugz 0.2.1-3
ii ruby-font-awesome-rails 4.7.0.4-1
ii ruby-fugit 1.3.3+gh-1
ii ruby-gemojione 3.3.0-1
ii ruby-gettext-i18n-rails 1.8.0-1
ii ruby-gettext-i18n-rails-js 1.3.0+dfsg-2
ii ruby-gitaly 1.59.3+dfsg-1~bpo10+2
ii ruby-github-markup 1.7.0+dfsg-2
ii ruby-gitlab-labkit 0.4.2-2~bpo10+1
ii ruby-gitlab-sidekiq-fetcher 0.5.1-1~bpo10+1
ii ruby-gon 6.2.1-1
ii ruby-google-api-client 0.28.4-1
ii ruby-google-protobuf 3.7.1-1~bpo10+1
ii ruby-googleauth 0.8.0-2
ii ruby-gpgme 2.0.19-1
ii ruby-grape 1.1.0-2
ii ruby-grape-entity 0.7.1-1
ii ruby-grape-logging 1.7.0-1
ii ruby-grape-path-helpers 1.1.0-1
ii ruby-graphiql-rails 1.4.10-1
ii ruby-graphql 1.8.4-1
ii ruby-grpc 1.19.1-1~bpo10+1
ii ruby-hamlit 2.9.2-2
ii ruby-hangouts-chat 0.0.5-2
ii ruby-hashie-forbidden-attributes 0.1.1-1
ii ruby-health-check 2.6.0-1
ii ruby-hipchat 1.5.2-3
ii ruby-html-pipeline 2.8.4-1
ii ruby-html2text 0.2.0-1
ii ruby-httparty 0.17.0-1
ii ruby-icalendar 2.4.1-2
ii ruby-influxdb 0.2.3-2
ii ruby-invisible-captcha 0.12.2-2
ii ruby-jira 1.5.0-1
ii ruby-jquery-atwho-rails 1.5.4+dfsg-1
ii ruby-js-regex 3.1.1-1
ii ruby-jwt 2.1.0-1~bpo10+1
ii ruby-kaminari 1.0.1-4
ii ruby-kgio 2.11.2-1+b1
ii ruby-kubeclient 4.3.0-1
ii ruby-licensee 8.9.2-1
ii ruby-lograge 0.10.0-1
ii ruby-loofah 2.3.1+dfsg-1
ii ruby-mail-room 0.9.1-2
ii ruby-memory-profiler 0.9.14-2
ii ruby-method-source 0.9.2-1
ii ruby-mimemagic 0.3.2+dfsg-1
ii ruby-mini-magick 4.9.2-1.1
ii ruby-nakayoshi-fork 0.0.4-1
ii ruby-net-ldap 0.16.1-1
ii ruby-net-ssh 1:5.2.0-1
ii ruby-nokogiri 1.10.4+dfsg1-1
ii ruby-ntlm 0.6.1-2
ii ruby-oauth2 1.4.1-2
ii ruby-octokit 4.13.0+gh-1
ii ruby-omniauth 1.8.1-1
ii ruby-omniauth-auth0 2.0.0-1
ii ruby-omniauth-authentiq 0.3.3-1
ii ruby-omniauth-azure-oauth2 0.0.10-1
ii ruby-omniauth-cas3 1.1.4-2
ii ruby-omniauth-crowd 2.4.0-1
ii ruby-omniauth-facebook 4.0.0-2
ii ruby-omniauth-github 1.3.0-1
ii ruby-omniauth-gitlab 1.0.2-1
ii ruby-omniauth-google-oauth2 0.6.0-1~bpo10+1
ii ruby-omniauth-kerberos 0.3.0-3
ii ruby-omniauth-ldap 2.1.1-1
ii ruby-omniauth-oauth2-generic 0.2.2-1
ii ruby-omniauth-openid-connect 0.3.1-1
ii ruby-omniauth-salesforce 1.0.5-2
ii ruby-omniauth-saml 1.10.0-1
ii ruby-omniauth-shibboleth 1.3.0-1
ii ruby-omniauth-twitter 1.4.0-1
ii ruby-omniauth-ultraauth 0.0.2-1.1
ii ruby-org 0.9.12-2
ii ruby-parser 3.11.0-1
ii ruby-peek 1.0.1-1
ii ruby-pg 1.1.3-3+b1
ii ruby-posix-spawn 0.3.13-2+b1
ii ruby-premailer-rails 1.10.3-1
ii ruby-prof 0.17.0+dfsg-3+b1
ii ruby-progressbar 1.9.0-2
ii ruby-prometheus-client-mmap 0.9.10-1
ii ruby-rack 2.0.7-2
ii ruby-rack-attack 4.4.1-1
ii ruby-rack-cors 1.0.2-1
ii ruby-rack-oauth2 1.9.3-2
ii ruby-rack-proxy 0.6.1-2
ii ruby-rails 2:5.2.3+dfsg-1
ii ruby-rails-i18n 5.1.2-2
ii ruby-rainbow 3.0.0-2
ii ruby-raindrops 0.19.0-1+b2
ii ruby-rbtrace 0.4.10-1+b1
ii ruby-re2 1.1.1-2+b3
ii ruby-recaptcha 4.11.1-2
ii ruby-redcloth 4.3.2-3+b1
ii ruby-redis 4.1.2-2~bpo10+1
ii ruby-redis-namespace 1.6.0-1
ii ruby-redis-rails 5.0.2-3
ii ruby-responders 2.4.0-3
ii ruby-rouge 3.12.0-1
ii ruby-rqrcode-rails3 0.1.7-1
ii ruby-rugged 0.28.1+ds-1~bpo10+1
ii ruby-sanitize 4.6.6-2
ii ruby-sassc 2.0.1-2
ii ruby-sassc-rails 2.1.2-3
ii ruby-seed-fu 2.3.7-3
ii ruby-sentry-raven 2.9.0-1
ii ruby-settingslogic 2.0.9-3
ii ruby-sidekiq 5.2.7+dfsg-1
ii ruby-sidekiq-cron 1.1.0-3
ii ruby-slack-notifier 1.5.1-2
ii ruby-sprockets 3.7.2-1
ii ruby-sshkey 2.0.0-2
ii ruby-state-machines-activerecord 0.5.1-2
ii ruby-statistics 2.1.1-2
ii ruby-sys-filesystem 1.1.7-2
ii ruby-task-list 2.2.0-1~bpo10+1
ii ruby-toml-rb 1.0.0-2
ii ruby-truncato 0.7.11-1
ii ruby-u2f 0.2.1-2
ii ruby-uglifier 2.7.2+dfsg-2
ii ruby-unf 0.1.4-2
ii ruby-unf-ext 0.0.7.5-1+b1
ii ruby-unicorn-worker-killer 0.4.4-1
ii ruby-validates-hostname 1.0.7-1
ii ruby-version-sorter 2.2.4-1
ii ruby-virtus 1.0.5-3
ii ruby-vmstat 2.3.0-2+b1
ii ruby-webpack-rails 0.9.11+git-1
ii ruby-wikicloth 0.8.1+dfsg-4
ii ruby-zip 1.2.2-1
ii ucf 3.0038+nmu1
ii unicorn 5.4.1-2
ii webpack 4.7.0-3
ii yarnpkg 1.19.1-1
Versions of packages gitlab recommends:
ii certbot 0.40.0-1
ii gitaly 1.59.3+dfsg-1~bpo10+2
gitlab suggests no packages.
-- Configuration Files:
/etc/gitlab/initializers/active_record_mysql_timestamp.rb [Errno 2] No such file or directory: '/etc/gitlab/initializers/active_record_mysql_timestamp.rb'
/etc/gitlab/initializers/ar_mysql_jsonb_support.rb [Errno 2] No such file or directory: '/etc/gitlab/initializers/ar_mysql_jsonb_support.rb'
-- debconf information excluded
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