Bug#896152: systemd/dbus hanging on stretch updates

Christoph Berg christoph.berg at credativ.de
Fri Apr 20 10:21:38 BST 2018


Package: systemd
Version: 232-25+deb9u2
Severity: important

Hi,

on stretch point release upgrades, I've repeatedly seem systemctl
running in to timeouts/errors from various postinst scripts. It
happened on different (similarly configured) machines, now on two
machines, and if I remember correctly twice before on previous point
releases.

I haven't reported this before because I have no idea which component
is to blame. Filing on systemd now because systemctl is timing out,
and on one system, systemd isn't reaping zombies anymore. (I tried
killing dbus, but it didn't help.)

Here are excerpts from a system where I haven't killed processes:

$ ps auxf
USER       PID %CPU %MEM    VSZ   RSS TTY      STAT START   TIME COMMAND
root         2  0.0  0.0      0     0 ?        S    Feb19   0:01 [kthreadd]
root         3  0.0  0.0      0     0 ?        S    Feb19   3:40  \_ [ksoftirqd/0]
root         5  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kworker/0:0H]
root         7  0.0  0.0      0     0 ?        S    Feb19  18:04  \_ [rcu_sched]
root         8  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [rcu_bh]
root         9  0.0  0.0      0     0 ?        S    Feb19   1:29  \_ [migration/0]
root        10  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [lru-add-drain]
root        11  0.0  0.0      0     0 ?        S    Feb19   0:09  \_ [watchdog/0]
root        12  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [cpuhp/0]
root        13  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [cpuhp/1]
root        14  0.0  0.0      0     0 ?        S    Feb19   0:08  \_ [watchdog/1]
root        15  0.0  0.0      0     0 ?        S    Feb19   1:29  \_ [migration/1]
root        16  0.0  0.0      0     0 ?        S    Feb19   2:07  \_ [ksoftirqd/1]
root        18  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kworker/1:0H]
root        19  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [cpuhp/2]
root        20  0.0  0.0      0     0 ?        S    Feb19   0:07  \_ [watchdog/2]
root        21  0.0  0.0      0     0 ?        S    Feb19   1:32  \_ [migration/2]
root        22  0.0  0.0      0     0 ?        S    Feb19   2:14  \_ [ksoftirqd/2]
root        24  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kworker/2:0H]
root        25  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [cpuhp/3]
root        26  0.0  0.0      0     0 ?        S    Feb19   0:08  \_ [watchdog/3]
root        27  0.0  0.0      0     0 ?        S    Feb19   1:32  \_ [migration/3]
root        28  0.0  0.0      0     0 ?        S    Feb19   2:15  \_ [ksoftirqd/3]
root        30  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kworker/3:0H]
root        31  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [kdevtmpfs]
root        32  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [netns]
root        33  0.0  0.0      0     0 ?        S    Feb19   0:05  \_ [khungtaskd]
root        34  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [oom_reaper]
root        35  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [writeback]
root        36  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [kcompactd0]
root        38  0.0  0.0      0     0 ?        SN   Feb19   0:00  \_ [ksmd]
root        39  0.0  0.0      0     0 ?        SN   Feb19   0:00  \_ [khugepaged]
root        40  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [crypto]
root        41  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kintegrityd]
root        42  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        43  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kblockd]
root        45  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [devfreq_wq]
root        46  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [watchdogd]
root        49  0.0  0.0      0     0 ?        S    Feb19  11:53  \_ [kswapd0]
root        50  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [vmstat]
root        62  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kthrotld]
root        65  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [ipv6_addrconf]
root        94  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        95  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        96  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        97  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        98  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root        99  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       100  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       101  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       106  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [mpt_poll_0]
root       107  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [ata_sff]
root       108  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [mpt/0]
root       111  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [scsi_eh_0]
root       112  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [scsi_tmf_0]
root       113  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       114  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [scsi_eh_1]
root       115  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [scsi_tmf_1]
root       117  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [scsi_eh_2]
root       118  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [scsi_tmf_2]
root       135  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       143  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kdmflush]
root       144  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       147  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kdmflush]
root       148  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       151  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [kdmflush]
root       152  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       162  0.0  0.0      0     0 ?        S<   Feb19   0:02  \_ [kworker/3:1H]
root       204  0.0  0.0      0     0 ?        S    Feb19   2:40  \_ [jbd2/dm-2-8]
root       205  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [ext4-rsv-conver]
root       241  0.0  0.0      0     0 ?        S    Feb19   0:00  \_ [kauditd]
root       251  0.0  0.0      0     0 ?        S<   Feb19   0:05  \_ [kworker/0:1H]
root       255  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       256  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       258  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       259  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       260  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       261  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       262  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       263  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [bioset]
root       347  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [ttm_swap]
root       424  0.0  0.0      0     0 ?        S    Feb19   1:09  \_ [jbd2/dm-1-8]
root       425  0.0  0.0      0     0 ?        S<   Feb19   0:00  \_ [ext4-rsv-conver]
root       667  0.0  0.0      0     0 ?        S<   Feb19   0:18  \_ [kworker/2:1H]
root       744  0.0  0.0      0     0 ?        S<   Feb19   0:04  \_ [kworker/1:1H]
root     18872  0.0  0.0      0     0 ?        S    06:16   0:00  \_ [kworker/1:0]
root     18894  0.0  0.0      0     0 ?        S    06:16   0:04  \_ [kworker/0:0]
root     19341  0.0  0.0      0     0 ?        S    06:25   0:04  \_ [kworker/3:2]
root     20684  0.0  0.0      0     0 ?        S    07:19   0:00  \_ [kworker/u8:2]
root     25207  0.0  0.0      0     0 ?        S    09:36   0:01  \_ [kworker/3:1]
root     25215  0.0  0.0      0     0 ?        S    09:36   0:00  \_ [kworker/1:1]
root     25219  0.0  0.0      0     0 ?        S    09:36   0:02  \_ [kworker/0:2]
root     25507  0.0  0.0      0     0 ?        S    09:36   0:00  \_ [kworker/u8:0]
root       477  0.0  0.0      0     0 ?        S    10:44   0:00  \_ [kworker/2:1]
root       879  0.0  0.0      0     0 ?        S    10:54   0:00  \_ [kworker/2:2]
root      2969  0.0  0.0      0     0 ?        S    10:59   0:00  \_ [kworker/u8:1]
root      2970  0.0  0.0      0     0 ?        S    11:00   0:00  \_ [kworker/2:0]
root         1  0.1  2.2 240936 184448 ?       Rs   Feb19 171:12 /lib/systemd/systemd --system --deserialize 19
root       240  0.0  0.0 135720  1120 ?        Ss   Feb19  72:00 /usr/bin/vmtoolsd
root       247  0.0  0.1  70772 14684 ?        Ss   Feb19  47:10 /lib/systemd/systemd-journald
root       277  0.0  0.0 107200     0 ?        Ss   Feb19   0:00 /sbin/lvmetad -f
root       289  0.0  0.0  45904  1080 ?        Ss   Feb19   0:08 /lib/systemd/systemd-udevd
root       460  0.0  0.0  12020     0 ?        Ss   Feb19   3:02 /usr/sbin/haveged --Foreground --verbose=1 -w 1024
root       473  0.0  0.0   4216     0 ?        Ss   Feb19   0:00 /usr/sbin/acpid
daemon     476  0.0  0.0  27964     0 ?        Ss   Feb19   0:00 /usr/sbin/atd -f
root       479  0.0  0.0 250116  1504 ?        Ssl  Feb19  13:09 /usr/sbin/rsyslogd -n
root       481  0.0  0.0 153488   216 ?        Ss   Feb19   0:00 /usr/bin/VGAuthService
root       483  0.0  0.0  34092   984 ?        Ss   Feb19   4:48 /usr/sbin/inetd
message+   487  0.0  0.5  89084 43560 ?        Ss   Feb19   7:59 /usr/bin/dbus-daemon --system --address=systemd: --nofork --nopidfile --systemd-activation
root       499  0.0  2.9 285512 240064 ?       Ss   Feb19   6:53 /lib/systemd/systemd-logind
root       500  0.0  0.0  31500   336 ?        Ss   Feb19   0:13 /usr/sbin/cron -f
root       593  0.0  0.0  69944   636 ?        Ss   Feb19   4:00 /usr/sbin/sshd -D
root      1657  0.0  0.0  95172   204 ?        Ss   Feb19   0:00  \_ sshd: buildd [priv]
buildd    1693  0.0  0.0  99320  3956 ?        S    Feb19  73:04  |   \_ sshd: buildd at notty
buildd    1762  0.6  2.2 5649972 180392 ?      Ssl  Feb19 578:49  |       \_ java -jar slave.jar
root     26135  0.0  0.0  95172  6444 ?        Ss   09:38   0:00  \_ sshd: myon [priv]
myon     26141  0.0  0.0  95172  4036 ?        S    09:38   0:00      \_ sshd: myon at pts/0,pts/2
myon     26142  0.0  0.0  24236  6440 pts/0    Ss   09:38   0:00          \_ -bash
root       378  0.0  0.0  51092  3660 pts/0    S+   10:43   0:00          |   \_ sudo apt-get install -f
root       379  0.1  0.5  89604 47604 pts/0    S+   10:43   0:01          |       \_ apt-get install -f
root       517  0.0  0.0  21336  5188 pts/1    Ss+  10:44   0:00          |           \_ /usr/bin/dpkg --status-fd 23 --configure --pending
root      3071  0.0  0.0   4288  1532 pts/1    S+   11:03   0:00          |               \_ /bin/sh /var/lib/dpkg/info/dbus.postinst configure 1.10.24-0+deb9u1
root      3080  0.0  0.0  22072  4884 pts/1    S+   11:03   0:00          |                   \_ /usr/bin/perl /usr/sbin/update-rc.d dbus defaults
root      3082  0.0  0.0  41428  2204 pts/1    S+   11:03   0:00          |                       \_ systemctl daemon-reload
myon      2931  0.0  0.0  24236  6468 pts/2    Ss   10:59   0:00          \_ -bash
myon      3097  0.0  0.0  40288  3480 pts/2    R+   11:05   0:00              \_ ps auxf
xymon      632  0.0  0.0   4268   472 ?        Ss   Feb19   1:11 /usr/lib/xymon/client/bin/xymonlaunch --config=/etc/xymon/clientlaunch.cfg --log=/var/log/xymon/clientlaunch.log --pidfile=/var/run/xymon/clientlaunch.pid
jenkins    697  0.0  0.0  65264  2432 ?        Ss   Feb19   2:19 /lib/systemd/systemd --user
jenkins    701  0.0  0.0  83084   220 ?        S    Feb19   0:00  \_ (sd-pam)
jenkins    737  0.0  0.0  20548    28 ?        S    Feb19   0:08 /usr/bin/daemon --name=jenkins --inherit --env=JENKINS_HOME=/var/lib/jenkins --output=/var/log/jenkins/jenkins.log --pidfile=/var/run/jenkins/jenkins.pid -- /usr/bin/java -Djava.awt.headless=true -jar /usr/share/j
jenkins    738  1.0 20.6 5873292 1684992 ?     Sl   Feb19 927:15  \_ /usr/bin/java -Djava.awt.headless=true -jar /usr/share/jenkins/jenkins.war --webroot=/var/cache/jenkins/war --httpPort=8081
root       757  0.0  0.0 100716  7752 ?        Ss   Feb19   3:28 /usr/sbin/apache2 -k start
www-data 19354  0.0  0.0 100212  4320 ?        S    06:25   0:00  \_ /usr/sbin/apache2 -k start
www-data 19364  0.0  0.0 1831960 6412 ?        Sl   06:25   0:00  \_ /usr/sbin/apache2 -k start
www-data 19365  0.0  0.0 1700984 6380 ?        Sl   06:25   0:00  \_ /usr/sbin/apache2 -k start
root       894  0.0  0.0 235068  1644 ?        Sl   Feb19   2:42 /opt/tivoli/tsm/client/ba/bin/dsmcad -optfile=/opt/tivoli/tsm/client/ba/bin/dsm.opt
root      1237  0.0  0.0  16372     0 tty1     Ss+  Feb19   0:00 /sbin/agetty --noclear tty1 linux
buildd    1686  0.0  0.0  65264  1780 ?        Ss   Feb19   2:22 /lib/systemd/systemd --user
buildd    1687  0.0  0.0  83084   220 ?        S    Feb19   0:00  \_ (sd-pam)
root      2983  0.0  0.0  56816  2600 ?        Ss   Feb19   2:19 /lib/systemd/systemd --user
root      2984  0.0  0.0  99476   232 ?        S    Feb19   0:00  \_ (sd-pam)
root     32041  0.0  0.0  42436  4188 ?        Ss   Apr16   4:32 /usr/sbin/openvpn --daemon ovpn-IBM --status /run/openvpn/IBM.status 10 --cd /etc/openvpn --config /etc/openvpn/IBM.conf --writepid /run/openvpn/IBM.pid
xymon      360  0.0  0.0      0     0 ?        Z    10:42   0:00 [sh] <defunct>
sshd       470  0.0  0.0      0     0 ?        Z    10:44   0:00 [sshd] <defunct>
sshd       625  0.0  0.0      0     0 ?        Z    10:46   0:00 [sshd] <defunct>
sshd       629  0.0  0.0      0     0 ?        Z    10:46   0:00 [sshd] <defunct>
xymon      706  0.0  0.0      0     0 ?        Z    10:47   0:00 [sh] <defunct>
sshd       758  0.0  0.0      0     0 ?        Z    10:48   0:00 [sshd] <defunct>
sshd       760  0.0  0.0      0     0 ?        Z    10:49   0:00 [sshd] <defunct>
xymon      841  0.0  0.0      0     0 ?        Z    10:52   0:00 [sh] <defunct>
sshd       868  0.0  0.0      0     0 ?        Z    10:53   0:00 [sshd] <defunct>
sshd       872  0.0  0.0      0     0 ?        Z    10:54   0:00 [sshd] <defunct>
xymon     2899  0.0  0.0      0     0 ?        Z    10:57   0:00 [sh] <defunct>
sshd      2930  0.0  0.0      0     0 ?        Z    10:59   0:00 [sshd] <defunct>
xymon     3049  0.0  0.0   4288   724 ?        S    11:02   0:00 sh -c vmstat 300 2 1>/var/lib/xymon/tmp/xymon_vmstat.pgdgbuild.dus.dg-i.net.2997 2>&1; mv /var/lib/xymon/tmp/xymon_vmstat.pgdgbuild.dus.dg-i.net.2997 /var/lib/xymon/tmp/xymon_vmstat.pgdgbuild.dus.dg-i.net
xymon     3051  0.0  0.0  27568  1504 ?        S    11:02   0:00  \_ vmstat 300 2
sshd      3086  0.0  0.0      0     0 ?        Z    11:03   0:00 [sshd] <defunct>
sshd      3088  0.0  0.0      0     0 ?        Z    11:04   0:00 [sshd] <defunct>


$ dist-upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
The following NEW packages will be installed:
  linux-image-4.9.0-6-amd64
The following packages will be upgraded:
  apache2 apache2-bin apache2-data apache2-utils base-files bsdutils cpp-6 cron curl dbus g++-6 gcc-6 gcc-6-base isc-dhcp-client
  isc-dhcp-common jenkins libapparmor1 libasan3 libatomic1 libblkid1 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libcc1-0
  libcilkrts5 libcups2 libcurl3 libcurl3-gnutls libdbus-1-3 libfdisk1 libgcc-6-dev libgcc1 libgomp1 libicu57 libitm1 liblsan0 libmount1
  libmpx2 libncurses5 libncursesw5 libpam-systemd libperl5.24 libpq-dev libpq5 libquadmath0 libsmartcols1 libssl1.0.2 libssl1.1
  libstdc++-6-dev libstdc++6 libsystemd0 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 linux-image-amd64 linux-libc-dev locales mount
  multiarch-support ncurses-base ncurses-bin ncurses-term ntp openjdk-8-jre-headless openssh-client openssh-server openssh-sftp-server
  openssl perl perl-base perl-modules-5.24 postfix postfix-sqlite postgresql-server-dev-10 postgresql-server-dev-9.3
  postgresql-server-dev-9.4 postgresql-server-dev-9.5 postgresql-server-dev-9.6 python-jenkins-job-builder python3-reportbug reportbug
  systemd systemd-sysv tzdata udev util-linux util-linux-locales w3m
92 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 219 MB of archives.
After this operation, 193 MB of additional disk space will be used.
Do you want to continue? [J/n]
Get:1 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 libpq-dev amd64 10.3-1.pgdg90+1 [220 kB]
Get:2 http://security.debian.org stretch/updates/main amd64 bsdutils amd64 1:2.29.2-1+deb9u1 [112 kB]
Get:3 http://security.debian.org stretch/updates/main amd64 util-linux amd64 2.29.2-1+deb9u1 [981 kB]
Get:4 http://debian-approx:9999/debian stretch/main amd64 base-files amd64 9.9+deb9u4 [67,3 kB]
Get:5 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 libpq5 amd64 10.3-1.pgdg90+1 [164 kB]
Get:6 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 postgresql-server-dev-10 amd64 10.3-1.pgdg90+1 [854 kB]
Get:7 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 postgresql-server-dev-9.3 amd64 9.3.22-1.pgdg90+1 [614 kB]
Get:8 http://security.debian.org stretch/updates/main amd64 mount amd64 2.29.2-1+deb9u1 [189 kB]
Get:9 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 postgresql-server-dev-9.4 amd64 9.4.17-1.pgdg90+1 [646 kB]
Get:10 http://security.debian.org stretch/updates/main amd64 libperl5.24 amd64 5.24.1-3+deb9u3 [3.527 kB]
Get:11 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 postgresql-server-dev-9.5 amd64 9.5.12-1.pgdg90+1 [728 kB]
Get:12 http://atalia-approx:9999/atalia stretch-pgdg/main amd64 postgresql-server-dev-9.6 amd64 9.6.8-1.pgdg90+1 [766 kB]
Get:14 http://security.debian.org stretch/updates/main amd64 perl amd64 5.24.1-3+deb9u3 [219 kB]
Get:15 http://security.debian.org stretch/updates/main amd64 perl-base amd64 5.24.1-3+deb9u3 [1.344 kB]
Get:16 http://debian-approx:9999/debian stretch/main amd64 ncurses-bin amd64 6.0+20161126-1+deb9u2 [366 kB]
Get:17 http://security.debian.org stretch/updates/main amd64 perl-modules-5.24 all 5.24.1-3+deb9u3 [2.723 kB]
Get:18 http://security.debian.org stretch/updates/main amd64 libuuid1 amd64 2.29.2-1+deb9u1 [70,1 kB]
Get:19 http://security.debian.org stretch/updates/main amd64 libblkid1 amd64 2.29.2-1+deb9u1 [168 kB]
Get:20 http://security.debian.org stretch/updates/main amd64 libmount1 amd64 2.29.2-1+deb9u1 [178 kB]
Get:21 http://security.debian.org stretch/updates/main amd64 libssl1.0.2 amd64 1.0.2l-2+deb9u3 [1.294 kB]
Get:22 http://debian-approx:9999/debian stretch/main amd64 libc6-dev amd64 2.24-11+deb9u3 [2.361 kB]
Get:23 http://security.debian.org stretch/updates/main amd64 apache2 amd64 2.4.25-3+deb9u4 [236 kB]
Get:24 http://security.debian.org stretch/updates/main amd64 apache2-bin amd64 2.4.25-3+deb9u4 [1.183 kB]
Get:25 http://security.debian.org stretch/updates/main amd64 apache2-utils amd64 2.4.25-3+deb9u4 [217 kB]
Get:26 http://security.debian.org stretch/updates/main amd64 apache2-data all 2.4.25-3+deb9u4 [162 kB]
Get:27 http://security.debian.org stretch/updates/main amd64 libssl1.1 amd64 1.1.0f-3+deb9u2 [1.344 kB]
Get:28 http://security.debian.org stretch/updates/main amd64 libfdisk1 amd64 2.29.2-1+deb9u1 [203 kB]
Get:29 http://security.debian.org stretch/updates/main amd64 libsmartcols1 amd64 2.29.2-1+deb9u1 [126 kB]
Get:30 http://security.debian.org stretch/updates/main amd64 isc-dhcp-client amd64 4.3.5-3+deb9u1 [325 kB]
Get:31 http://security.debian.org stretch/updates/main amd64 isc-dhcp-common amd64 4.3.5-3+deb9u1 [136 kB]
Get:32 http://security.debian.org stretch/updates/main amd64 curl amd64 7.52.1-5+deb9u5 [228 kB]
Get:33 http://security.debian.org stretch/updates/main amd64 libcurl3 amd64 7.52.1-5+deb9u5 [291 kB]
Get:34 http://security.debian.org stretch/updates/main amd64 libcurl3-gnutls amd64 7.52.1-5+deb9u5 [290 kB]
Get:35 http://security.debian.org stretch/updates/main amd64 libicu57 amd64 57.1-6+deb9u2 [7.700 kB]
Get:36 http://debian-approx:9999/debian stretch/main amd64 libc-dev-bin amd64 2.24-11+deb9u3 [258 kB]
Get:37 http://security.debian.org stretch/updates/main amd64 openjdk-8-jre-headless amd64 8u162-b12-1~deb9u1 [27,2 MB]
Get:38 http://debian-approx:9999/debian stretch/main amd64 linux-libc-dev amd64 4.9.82-1+deb9u3 [1.320 kB]
Get:39 http://debian-approx:9999/debian stretch/main amd64 libquadmath0 amd64 6.3.0-18+deb9u1 [131 kB]
Get:13 http://pkg.jenkins-ci.org/debian-stable binary/ jenkins 2.107.2 [73,9 MB]
Get:40 http://debian-approx:9999/debian stretch/main amd64 libitm1 amd64 6.3.0-18+deb9u1 [27,3 kB]
Get:41 http://debian-approx:9999/debian stretch/main amd64 gcc-6-base amd64 6.3.0-18+deb9u1 [180 kB]
Get:42 http://debian-approx:9999/debian stretch/main amd64 libgcc1 amd64 1:6.3.0-18+deb9u1 [38,0 kB]
Get:43 http://security.debian.org stretch/updates/main amd64 openssl amd64 1.1.0f-3+deb9u2 [725 kB]
Get:44 http://security.debian.org stretch/updates/main amd64 util-linux-locales all 2.29.2-1+deb9u1 [999 kB]
Get:45 http://debian-approx:9999/debian stretch/main amd64 libcc1-0 amd64 6.3.0-18+deb9u1 [30,6 kB]
Get:46 http://debian-approx:9999/debian stretch/main amd64 libgomp1 amd64 6.3.0-18+deb9u1 [73,3 kB]
Get:47 http://debian-approx:9999/debian stretch/main amd64 libatomic1 amd64 6.3.0-18+deb9u1 [8.966 B]
Get:48 http://debian-approx:9999/debian stretch/main amd64 libasan3 amd64 6.3.0-18+deb9u1 [311 kB]
Get:49 http://debian-approx:9999/debian stretch/main amd64 liblsan0 amd64 6.3.0-18+deb9u1 [115 kB]
Get:50 http://debian-approx:9999/debian stretch/main amd64 libtsan0 amd64 6.3.0-18+deb9u1 [257 kB]
Get:51 http://debian-approx:9999/debian stretch/main amd64 libubsan0 amd64 6.3.0-18+deb9u1 [107 kB]
Get:52 http://debian-approx:9999/debian stretch/main amd64 libcilkrts5 amd64 6.3.0-18+deb9u1 [40,5 kB]
Get:53 http://debian-approx:9999/debian stretch/main amd64 libmpx2 amd64 6.3.0-18+deb9u1 [11,2 kB]
Get:54 http://debian-approx:9999/debian stretch/main amd64 g++-6 amd64 6.3.0-18+deb9u1 [7.094 kB]
Get:55 http://debian-approx:9999/debian stretch/main amd64 libstdc++-6-dev amd64 6.3.0-18+deb9u1 [1.420 kB]
Get:56 http://debian-approx:9999/debian stretch/main amd64 libgcc-6-dev amd64 6.3.0-18+deb9u1 [2.296 kB]
Get:57 http://debian-approx:9999/debian stretch/main amd64 gcc-6 amd64 6.3.0-18+deb9u1 [6.900 kB]
Get:58 http://debian-approx:9999/debian stretch/main amd64 cpp-6 amd64 6.3.0-18+deb9u1 [6.584 kB]
Get:59 http://debian-approx:9999/debian stretch/main amd64 libstdc++6 amd64 6.3.0-18+deb9u1 [396 kB]
Get:60 http://debian-approx:9999/debian stretch/main amd64 libc6 amd64 2.24-11+deb9u3 [2.693 kB]
Get:61 http://debian-approx:9999/debian stretch/main amd64 libc-bin amd64 2.24-11+deb9u3 [779 kB]
Get:62 http://debian-approx:9999/debian stretch/main amd64 ncurses-base all 6.0+20161126-1+deb9u2 [238 kB]
Get:63 http://debian-approx:9999/debian stretch/main amd64 dbus amd64 1.10.26-0+deb9u1 [210 kB]
Get:64 http://debian-approx:9999/debian stretch/main amd64 libdbus-1-3 amd64 1.10.26-0+deb9u1 [194 kB]
Get:65 http://debian-approx:9999/debian stretch/main amd64 libapparmor1 amd64 2.11.0-3+deb9u2 [78,9 kB]
Get:66 http://debian-approx:9999/debian stretch-updates/main amd64 systemd-sysv amd64 232-25+deb9u3 [81,1 kB]
Get:67 http://debian-approx:9999/debian stretch-updates/main amd64 libpam-systemd amd64 232-25+deb9u3 [188 kB]
Get:68 http://debian-approx:9999/debian stretch-updates/main amd64 libsystemd0 amd64 232-25+deb9u3 [280 kB]
Get:69 http://debian-approx:9999/debian stretch-updates/main amd64 systemd amd64 232-25+deb9u3 [2.468 kB]
Get:70 http://debian-approx:9999/debian stretch-updates/main amd64 udev amd64 232-25+deb9u3 [1.114 kB]
Get:71 http://debian-approx:9999/debian stretch-updates/main amd64 libudev1 amd64 232-25+deb9u3 [125 kB]
Get:72 http://debian-approx:9999/debian stretch/main amd64 cron amd64 3.0pl1-128+deb9u1 [95,4 kB]
Get:73 http://debian-approx:9999/debian stretch/main amd64 ntp amd64 1:4.2.8p10+dfsg-3+deb9u2 [599 kB]
Get:74 http://debian-approx:9999/debian stretch/main amd64 libncurses5 amd64 6.0+20161126-1+deb9u2 [93,4 kB]
Get:75 http://debian-approx:9999/debian stretch/main amd64 libtinfo5 amd64 6.0+20161126-1+deb9u2 [300 kB]
Get:76 http://debian-approx:9999/debian stretch/main amd64 libncursesw5 amd64 6.0+20161126-1+deb9u2 [115 kB]
Get:77 http://debian-approx:9999/debian stretch/main amd64 multiarch-support amd64 2.24-11+deb9u3 [200 kB]
Get:78 http://debian-approx:9999/debian stretch-updates/main amd64 tzdata all 2018d-0+deb9u1 [266 kB]
Get:79 http://debian-approx:9999/debian stretch/main amd64 libc-l10n all 2.24-11+deb9u3 [820 kB]
Get:80 http://debian-approx:9999/debian stretch/main amd64 locales all 2.24-11+deb9u3 [3.287 kB]
Get:81 http://debian-approx:9999/debian stretch/main amd64 ncurses-term all 6.0+20161126-1+deb9u2 [469 kB]
Get:82 http://debian-approx:9999/debian stretch/main amd64 openssh-sftp-server amd64 1:7.4p1-10+deb9u3 [39,5 kB]
Get:83 http://debian-approx:9999/debian stretch/main amd64 openssh-server amd64 1:7.4p1-10+deb9u3 [332 kB]
Get:84 http://debian-approx:9999/debian stretch/main amd64 openssh-client amd64 1:7.4p1-10+deb9u3 [779 kB]
Get:85 http://debian-approx:9999/debian stretch/main amd64 reportbug all 7.1.7+deb9u1 [128 kB]
Get:86 http://debian-approx:9999/debian stretch/main amd64 python3-reportbug all 7.1.7+deb9u1 [129 kB]
Get:87 http://debian-approx:9999/debian stretch/main amd64 libcups2 amd64 2.2.1-8+deb9u1 [306 kB]
Get:88 http://debian-approx:9999/debian stretch/main amd64 linux-image-4.9.0-6-amd64 amd64 4.9.82-1+deb9u3 [39,0 MB]
Get:89 http://debian-approx:9999/debian stretch/main amd64 linux-image-amd64 amd64 4.9+80+deb9u4 [7.030 B]
Get:90 http://debian-approx:9999/debian stretch-backports/main amd64 python-jenkins-job-builder all 2.0.0~b2-2~bpo9+1 [173 kB]
Get:91 http://debian-approx:9999/debian stretch/main amd64 w3m amd64 0.5.3-34+deb9u1 [1.040 kB]
Get:92 http://debian-approx:9999/debian stretch/main amd64 postfix-sqlite amd64 3.1.8-0+deb9u1 [318 kB]
Get:93 http://debian-approx:9999/debian stretch/main amd64 postfix amd64 3.1.8-0+deb9u1 [1.437 kB]
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invoke-rc.d: initscript cron, action "stop" failed.
dpkg: warning: subprocess old pre-removal script returned error exit status 1
dpkg: trying script from the new package instead ...
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See system logs and 'systemctl status cron.service' for details.
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invoke-rc.d: initscript cron, action "stop" failed.
dpkg: error processing archive /tmp/apt-dpkg-install-mGFL7g/0-cron_3.0pl1-128+deb9u1_amd64.deb (--unpack):
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Unpacking libssl1.1:amd64 (1.1.0f-3+deb9u2) over (1.1.0f-3+deb9u1) ...
Preparing to unpack .../7-ntp_1%3a4.2.8p10+dfsg-3+deb9u2_amd64.deb ...
Failed to reload daemon: Connection timed out
Failed to retrieve unit: Connection timed out
Failed to stop ntp.service: Connection timed out
See system logs and 'systemctl status ntp.service' for details.
Failed to get load state of ntp.service: Connection timed out
invoke-rc.d: initscript ntp, action "stop" failed.
Unpacking ntp (1:4.2.8p10+dfsg-3+deb9u2) over (1:4.2.8p10+dfsg-3+deb9u1) ...
Failed to reload daemon: Connection timed out
Preparing to unpack .../8-libfdisk1_2.29.2-1+deb9u1_amd64.deb ...
Unpacking libfdisk1:amd64 (2.29.2-1+deb9u1) over (2.29.2-1) ...
Errors were encountered while processing:
 /tmp/apt-dpkg-install-mGFL7g/0-cron_3.0pl1-128+deb9u1_amd64.deb
[master 2703c3f] committing changes in /etc after apt run
 1 file changed, 1 insertion(+), 1 deletion(-)
E: Sub-process /usr/bin/dpkg returned an error code (1)
W: Operation was interrupted before it could finish

$ sudo apt-get install -f
Reading package lists... Done
Building dependency tree
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 40 not upgraded.
37 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Setting up libapparmor1:amd64 (2.11.0-3+deb9u2) ...
Setting up systemd (232-25+deb9u3) ...
addgroup: The group `systemd-journal' already exists as a system group. Exiting.
Failed to reload daemon: No buffer space available
Warning! D-Bus connection terminated.
Failed to try-restart systemd-networkd.service: Connection reset by peer
See system logs and 'systemctl status systemd-networkd.service' for details.
Failed to try-restart systemd-resolved.service: Connection timed out
See system logs and 'systemctl status systemd-resolved.service' for details.
Failed to try-restart systemd-timesyncd.service: Connection timed out
See system logs and 'systemctl status systemd-timesyncd.service' for details.
Setting up libfdisk1:amd64 (2.29.2-1+deb9u1) ...
Setting up libquadmath0:amd64 (6.3.0-18+deb9u1) ...
Setting up libgomp1:amd64 (6.3.0-18+deb9u1) ...
Setting up libatomic1:amd64 (6.3.0-18+deb9u1) ...
Setting up perl-modules-5.24 (5.24.1-3+deb9u3) ...
Setting up libperl5.24:amd64 (5.24.1-3+deb9u3) ...
Setting up libcc1-0:amd64 (6.3.0-18+deb9u1) ...
Setting up libasan3:amd64 (6.3.0-18+deb9u1) ...
Processing triggers for mime-support (3.60) ...
Setting up libcilkrts5:amd64 (6.3.0-18+deb9u1) ...
Processing triggers for install-info (6.3.0.dfsg.1-1+b2) ...
Setting up systemd-sysv (232-25+deb9u3) ...
Setting up libubsan0:amd64 (6.3.0-18+deb9u1) ...
Setting up libtsan0:amd64 (6.3.0-18+deb9u1) ...
Setting up linux-libc-dev:amd64 (4.9.82-1+deb9u3) ...
Setting up apache2-data (2.4.25-3+deb9u4) ...
Setting up liblsan0:amd64 (6.3.0-18+deb9u1) ...
Setting up perl (5.24.1-3+deb9u3) ...
Setting up libssl1.0.2:amd64 (1.0.2l-2+deb9u3) ...
Setting up libmpx2:amd64 (6.3.0-18+deb9u1) ...
Processing triggers for libc-bin (2.24-11+deb9u3) ...
Setting up udev (232-25+deb9u3) ...
addgroup: The group `input' already exists as a system group. Exiting.
Failed to reload daemon: Connection timed out
Failed to reload daemon: Connection timed out
Failed to retrieve unit: Connection timed out
Failed to restart udev.service: Connection timed out
See system logs and 'systemctl status udev.service' for details.
invoke-rc.d: initscript udev, action "restart" failed.
Failed to get properties: Connection timed out
dpkg: error processing package udev (--configure):
 subprocess installed post-installation script returned error exit status 1
Setting up libssl1.1:amd64 (1.1.0f-3+deb9u2) ...
Processing triggers for man-db (2.7.6.1-2) ...
Setting up cpp-6 (6.3.0-18+deb9u1) ...
Setting up libc-dev-bin (2.24-11+deb9u3) ...
Setting up libc6-dev:amd64 (2.24-11+deb9u3) ...
Setting up libitm1:amd64 (6.3.0-18+deb9u1) ...
Setting up libdbus-1-3:amd64 (1.10.26-0+deb9u1) ...
Setting up libgcc-6-dev:amd64 (6.3.0-18+deb9u1) ...
Setting up libstdc++-6-dev:amd64 (6.3.0-18+deb9u1) ...
Setting up apache2-utils (2.4.25-3+deb9u4) ...
Setting up apache2-bin (2.4.25-3+deb9u4) ...
Setting up ntp (1:4.2.8p10+dfsg-3+deb9u2) ...
Failed to reload daemon: Connection timed out
Failed to reload daemon: Connection timed out
Failed to retrieve unit: Connection timed out
Failed to start ntp.service: Connection timed out
See system logs and 'systemctl status ntp.service' for details.
invoke-rc.d: initscript ntp, action "start" failed.
Failed to get properties: Connection timed out
dpkg: error processing package ntp (--configure):
 subprocess installed post-installation script returned error exit status 1
Setting up gcc-6 (6.3.0-18+deb9u1) ...
Setting up g++-6 (6.3.0-18+deb9u1) ...
Setting up dbus (1.10.26-0+deb9u1) ...
A reboot is required to replace the running dbus-daemon.
Please reboot the system when convenient.
Failed to reload daemon: Connection timed out
Failed to reload daemon: Connection timed out
Failed to reload daemon: Connection timed out
Failed to retrieve unit: Connection timed out
Failed to start dbus.service: Connection timed out
See system logs and 'systemctl status dbus.service' for details.
invoke-rc.d: initscript dbus, action "start" failed.
Failed to get properties: Connection timed out
dpkg: error processing package dbus (--configure):
 subprocess installed post-installation script returned error exit status 1
dpkg: dependency problems prevent configuration of libpam-systemd:amd64:
 libpam-systemd:amd64 depends on dbus; however:
  Package dbus is not configured yet.

dpkg: error processing package libpam-systemd:amd64 (--configure):
 dependency problems - leaving unconfigured
Setting up apache2 (2.4.25-3+deb9u4) ...
Failed to reload daemon: Connection timed out
[still running]


There's nothing in the logs which looks like the cause, but maybe I
haven't seen it among the plethora of messages. (I can provide logs if
it helps.)

Christoph



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