Bug#1080427: systemd fails to upgrade or respond, indicating a timeout error
Petter L. H. Eide
petter at eide.biz
Tue Sep 3 19:43:22 BST 2024
Package: systemd
Version: 256.5-2
Severity: important
Dear Maintainer,
When attempting to upgrade systemd, it fails with the following error
message:
x at splendid:~$ sudo apt install --fix-broken
Summary:
Upgrading: 0, Installing: 0, Removing: 0, Not Upgrading: 91
3 not fully installed or removed.
Space needed: 0 B / 1550 GB available
Setting up systemd (256.5-2) ...
Failed to retrieve unit state: Failed to activate service
'org.freedesktop.systemd1': timed out (service_start_timeout=25000ms)
Failed to get properties: Failed to activate service
'org.freedesktop.systemd1': timed out (service_start_timeout=25000ms)
dpkg: error processing package systemd (--configure):
installed systemd package post-installation script subprocess returned
error exit status 1
dpkg: dependency problems prevent configuration of libpam-systemd:amd64:
libpam-systemd:amd64 depends on systemd (= 256.5-2); however:
Package systemd is not configured yet.
dpkg: error processing package libpam-systemd:amd64 (--configure):
dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of libnss-systemd:amd64:
libnss-systemd:amd64 depends on systemd (= 256.5-2); however:
Package systemd is not configured yet.
dpkg: error processing package libnss-systemd:amd64 (--configure):
dependency problems - leaving unconfigured
Errors were encountered while processing:
systemd
libpam-systemd:amd64
libnss-systemd:amd64
Error: Sub-process /usr/bin/dpkg returned an error code (1)
I see it is reporting issues in kernel log:
x at splendid:~$ sudo dmesg | grep systemd | tail
[1206807.222886] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1206896.972072] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1206987.220916] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207076.970031] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207167.219158] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207256.968271] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207347.217466] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207436.966581] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207526.965544] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
[1207616.964663] systemd-journald[598]: Failed to send WATCHDOG=1
notification message: Transport endpoint is not connected
And after chatting online, I understand the following may also be relevant:
x at splendid:~$ sudo busctl list
NAME PID PROCESS USER
CONNECTION UNIT SESSION DESCRIPTION
:1.0 947 bluetoothd root :1.0
bluetooth.service - -
:1.1 948 boltd root :1.1
bolt.service - -
:1.10 943 systemd-network systemd-network
:1.10 systemd-networkd.service - -
:1.1157320 2024002 agent x
:1.1157320 lightdm.service - -
:1.1159365 2031401 Xorg root
:1.1159365 lightdm.service - -
:1.1188901 2092685 lightdm root
:1.1188901 lightdm.service - -
:1.1188916 2092698 gnome-keyring-d x
:1.1188916 lightdm.service - -
:1.1188922 2092839 xfce4-panel x
:1.1188922 lightdm.service - -
:1.1188923 2092889 xiccd x
:1.1188923 lightdm.service - -
:1.1188924 2092890 agent x
:1.1188924 lightdm.service - -
:1.1188925 2092922 gvfs-udisks2-vo x
:1.1188925 lightdm.service - -
:1.1188929 2092863 panel-15-pulsea x
:1.1188929 lightdm.service - -
:1.1188932 2092913 blueman-applet x
:1.1188932 lightdm.service - -
:1.1188933 2093095 xdg-desktop-por x
:1.1188933 lightdm.service - -
:1.1188934 2093061 xdg-desktop-por x
:1.1188934 lightdm.service - -
:1.1188935 2093121 obexd x
:1.1188935 lightdm.service - -
:1.1192450 2102378 chrome x
:1.1192450 lightdm.service - -
:1.1192451 2102378 chrome x
:1.1192451 lightdm.service - -
:1.1192452 2102378 chrome x
:1.1192452 lightdm.service - -
:1.12 1177 colord colord
:1.12 colord.service - -
:1.1249021 967 prometheus-node prometheus
:1.1249021 prometheus-node-exporter.service - -
:1.1249022 967 prometheus-node prometheus
:1.1249022 prometheus-node-exporter.service - -
:1.1249042 2182253 busctl root
:1.1249042 lightdm.service - -
:1.176773 398845 fwupd root
:1.176773 fwupd.service - -
:1.2 971 rtkit-daemon root :1.2
rtkit-daemon.service - -
:1.21 2052 lightdm root
:1.21 lightdm.service - -
:1.3 1004 udisksd root :1.3
udisks2.service - -
:1.5 945 avahi-daemon avahi :1.5
avahi-daemon.service - -
:1.536049 1194217 cupsd root
:1.536049 cups.service - -
:1.536050 1194224 cups-browsed root
:1.536050 cups-browsed.service - -
:1.536051 1194224 cups-browsed root
:1.536051 cups-browsed.service - -
:1.6 1003 systemd-logind root :1.6
systemd-logind.service - -
:1.7 1074 wpa_supplicant root :1.7
wpa_supplicant.service - -
:1.803 3095 systemd x
:1.803 user at 1000.service - -
:1.804 3118 gnome-keyring-d x
:1.804 user at 1000.service - -
:1.811 3116 pulseaudio x
:1.811 user at 1000.service - -
:1.829 3352 agent x
:1.829 session-3.scope 3 -
:1.830 3386 gvfs-udisks2-vo x
:1.830 user at 1000.service - -
:1.843 3578 obexd x
:1.843 user at 1000.service - -
:1.844 3543 xdg-desktop-por x
:1.844 user at 1000.service - -
:1.847 3723 upowerd root
:1.847 upower.service - -
:1.9 1069 polkitd polkitd :1.9
polkit.service - -
fi.w1.wpa_supplicant1 1074 wpa_supplicant root :1.7
wpa_supplicant.service - -
org.blueman.Mechanism - - -
(activatable) - - -
org.bluez 947 bluetoothd root :1.0
bluetooth.service - -
org.freedesktop.Avahi 945 avahi-daemon avahi :1.5
avahi-daemon.service - -
org.freedesktop.ColorManager 1177 colord colord
:1.12 colord.service - -
org.freedesktop.DBus 1 systemd root -
init.scope - -
org.freedesktop.DisplayManager 2052 lightdm root
:1.21 lightdm.service - -
org.freedesktop.GeoClue2 - - -
(activatable) - - -
org.freedesktop.PolicyKit1 1069 polkitd polkitd :1.9
polkit.service - -
org.freedesktop.RealtimeKit1 971 rtkit-daemon root :1.2
rtkit-daemon.service - -
org.freedesktop.UDisks2 1004 udisksd root :1.3
udisks2.service - -
org.freedesktop.UPower 3723 upowerd root
:1.847 upower.service - -
org.freedesktop.bolt 948 boltd root :1.1
bolt.service - -
org.freedesktop.fwupd 398845 fwupd root
:1.176773 fwupd.service - -
org.freedesktop.hostname1 - - -
(activatable) - - -
org.freedesktop.locale1 - - -
(activatable) - - -
org.freedesktop.login1 1003 systemd-logind root :1.6
systemd-logind.service - -
org.freedesktop.network1 943 systemd-network systemd-network
:1.10 systemd-networkd.service - -
org.freedesktop.systemd1 - - -
(activatable) - - -
org.freedesktop.timedate1 - - -
(activatable) - - -
x at x:~$ ps fax | grep systemd
1 ? Ss 2:07 /usr/lib/systemd/systemd --system
--deserialize=73
598 ? Ss 15:28 /usr/lib/systemd/systemd-journald
613 ? Ss 0:04 /usr/lib/systemd/systemd-udevd
943 ? Ss 0:05 /usr/lib/systemd/systemd-networkd
949 ? Ss 49:29 /usr/bin/dbus-daemon --system
--address=systemd: --nofork --nopidfile --systemd-activation --syslog-only
1003 ? Ss 0:03 /usr/lib/systemd/systemd-logind
3095 ? Ss 0:01 /usr/lib/systemd/systemd --user
3123 ? Ss 0:08 \_ /usr/bin/dbus-daemon --session
--address=systemd: --nofork --nopidfile --systemd-activation --syslog-only
-- Package-specific info:
-- System Information:
Debian Release: trixie/sid
APT prefers stable-security
APT policy: (500, 'stable-security'), (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.10.3-amd64 (SMP w/24 CPU threads; PREEMPT)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8),
LANGUAGE=C.UTF-8:en_NO.utf8:en_US.utf8:en_GB.utf8:en:en.utf8
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages systemd depends on:
ii libacl1 2.3.2-2
ii libapparmor1 3.1.7-1+b1
ii libblkid1 2.40.2-7
ii libc6 2.40-2
ii libcap2 1:2.66-5
ii libmount1 2.40.2-7
ii libpam0g 1.5.3-7
ii libseccomp2 2.5.5-1+b1
ii libselinux1 3.7-3
ii libssl3t64 3.3.1-7
ii libsystemd-shared 256.5-2
ii libsystemd0 256.5-2
ii mount 2.40.2-7
Versions of packages systemd recommends:
ii dbus [default-dbus-system-bus] 1.14.10-4+b1
ii libzstd1 1.5.6+dfsg-1
ii linux-sysctl-defaults 4.10.1
ii ntpsec [time-daemon] 1.2.3+dfsg1-3
ii systemd-cryptsetup 256.5-2
Versions of packages systemd suggests:
ii libcryptsetup12 2:2.7.4-1
ii libgcrypt20 1.11.0-6
ii libidn2-0 2.3.7-2
ii liblz4-1 1.9.4-3
ii liblzma5 5.6.2-2
pn libtss2-rc0t64 <none>
ii libtss2-tcti-device0t64 [libtss2-tcti-device0] 4.1.3-1
ii polkitd 125-2
pn systemd-boot <none>
pn systemd-container <none>
pn systemd-homed <none>
pn systemd-repart <none>
pn systemd-resolved <none>
pn systemd-userdbd <none>
Versions of packages systemd is related to:
ii dbus-user-session 1.14.10-4+b1
pn dracut <none>
ii initramfs-tools 0.145
iu libnss-systemd 256.5-2
iu libpam-systemd 256.5-2
ii udev 256.5-1
-- no debconf information
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