[Pkg-utopia-maintainers] Bug#1043555: flatpak: removing an app leaves empty directories on disk

[t41ap7+4g6hxdjbgl1v8 at cs.email]

Package: flatpak
Version: 1.14.4-1
Severity: normal

Dear Maintainer,

If you install any application from flathub, and then uninstall that application, it will leave an empty directory in /var/lib/flatpak/repo/refs/remotes/flathub/app/ with the application name. It should not be doing this.

Please forward this bug upstream if it is an upstream bug. Thank you.

-- Package-specific info:
Permissions of /usr/bin/bwrap:
-rwxr-xr-x 1 root root 72080 Feb 28 09:38 /usr/bin/bwrap
/etc/sysctl.d/*-bubblewrap.conf:
cat: '/etc/sysctl.d/*-bubblewrap.conf': No such file or directory
/usr/lib/sysctl.d/50-bubblewrap.conf:
# Enable unprivileged creation of new user namespaces in older Debian
# kernels.
#
# If this is not desired, copy this file to
# /etc/sysctl.d/50-bubblewrap.conf and change the value of this parameter
# to 0, then use dpkg-statoverride to make /usr/bin/bwrap setuid root.
#
# For more details see https://deb.li/bubblewrap or
# /usr/share/doc/bubblewrap/README.Debian
kernel.unprivileged_userns_clone=1
/proc/sys/kernel/unprivileged_userns_clone:
1
/proc/sys/user/max_cgroup_namespaces:
3568
/proc/sys/user/max_ipc_namespaces:
3568
/proc/sys/user/max_mnt_namespaces:
3568
/proc/sys/user/max_net_namespaces:
3568
/proc/sys/user/max_pid_namespaces:
3568
/proc/sys/user/max_time_namespaces:
3568
/proc/sys/user/max_user_namespaces:
3568
/proc/sys/user/max_uts_namespaces:
3568

-- System Information:
Debian Release: 12.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-10-amd64 (SMP w/2 CPU threads; PREEMPT)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages flatpak depends on:
ii  adduser                         3.134
ii  bubblewrap                      0.8.0-2
ii  dbus [default-dbus-system-bus]  1.14.8-2~deb12u1
ii  fuse3                           3.14.0-4
ii  libappstream4                   0.16.1-2
ii  libarchive13                    3.6.2-1
ii  libc6                           2.36-9+deb12u1
ii  libcurl3-gnutls                 7.88.1-10
ii  libdconf1                       0.40.0-4
ii  libfuse3-3                      3.14.0-4
ii  libgdk-pixbuf-2.0-0             2.42.10+dfsg-1+b1
ii  libglib2.0-0                    2.74.6-2
ii  libgpgme11                      1.18.0-3+b1
ii  libjson-glib-1.0-0              1.6.6-1
ii  libmalcontent-0-0               0.11.0-4
ii  libostree-1-1                   2022.7-2
ii  libpolkit-agent-1-0             122-3
ii  libpolkit-gobject-1-0           122-3
ii  libseccomp2                     2.5.4-1+b3
ii  libsystemd0                     252.12-1~deb12u1
ii  libxau6                         1:1.0.9-1
ii  libxml2                         2.9.14+dfsg-1.3~deb12u1
ii  libzstd1                        1.5.4+dfsg2-5
ii  xdg-dbus-proxy                  0.1.4-3

Versions of packages flatpak recommends:
ii  ca-certificates                                      20230311
ii  desktop-file-utils                                   0.26-1
ii  gtk-update-icon-cache                                3.24.37-2
ii  hicolor-icon-theme                                   0.17-2
ii  libpam-systemd                                       252.12-1~deb12u1
ii  p11-kit                                              0.24.1-2
ii  policykit-1                                          122-3
ii  polkitd                                              122-3
ii  shared-mime-info                                     2.2-1
ii  xdg-desktop-portal                                   1.16.0-2
ii  xdg-desktop-portal-gtk [xdg-desktop-portal-backend]  1.14.1-1
ii  xdg-user-dirs                                        0.18-1

Versions of packages flatpak suggests:
ii  avahi-daemon    0.8-10
pn  malcontent-gui  <none>

Versions of packages bubblewrap depends on:
ii  libc6        2.36-9+deb12u1
ii  libcap2      1:2.66-4
ii  libselinux1  3.4-1+b6

Versions of packages bubblewrap recommends:
ii  procps  2:4.0.2-3

-- no debconf information