[Python-modules-team] Bug#678036: Bug#678036: 1.7~rc1 causes FTBFS in nipype 0.5.3-1

Sandro Tosi morph at debian.org
Mon Jun 18 21:11:52 UTC 2012


Hello,
can you please provide a minimal test case I can use as example to
forward upstream?

thanks,
Sandro

On Mon, Jun 18, 2012 at 9:02 PM, Yaroslav Halchenko
<debian at onerussian.com> wrote:
> Package: python-networkx
> Version: 1.7~rc1-1
> Severity: serious
>
> I was about to upload a fix for #664944 but the build failed due to error
> while running unittests:
>
> ======================================================================
> ERROR: Failure: ValueError (need more than 0 values to unpack)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 231, in generate
>    for test in g():
>  File "/tmp/buildd/nipype-0.5.3/debian/python-nipype/usr/lib/python2.7/site-packages/nipype/pipeline/plugins/tests/test_callback.py", line 76, in test_callback_multiproc_normal
>    wf.run(plugin='MultiProc', plugin_args={'status_callback': so.callback})
>  File "/tmp/buildd/nipype-0.5.3/debian/python-nipype/usr/lib/python2.7/site-packages/nipype/pipeline/engine.py", line 519, in run
>    runner.run(execgraph, updatehash=updatehash, config=self.config)
>  File "/tmp/buildd/nipype-0.5.3/debian/python-nipype/usr/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 140, in run
>    self._generate_dependency_list(graph)
>  File "/tmp/buildd/nipype-0.5.3/debian/python-nipype/usr/lib/python2.7/site-packages/nipype/pipeline/plugins/base.py", line 329, in _generate_dependency_list
>    self.depidx = nx.to_scipy_sparse_matrix(graph)
>  File "/usr/lib/pymodules/python2.7/networkx/convert.py", line 783, in to_scipy_sparse_matrix
>    for u,v,d in G.edges(nodelist, data=True)
> ValueError: need more than 0 values to unpack
> -------------------- >> begin captured logging << --------------------
> workflow: INFO: ['check', 'execution', 'logging']
> workflow: INFO: Running in parallel.
> --------------------- >> end captured logging << ---------------------



-- 
Sandro Tosi (aka morph, morpheus, matrixhasu)
My website: http://matrixhasu.altervista.org/
Me at Debian: http://wiki.debian.org/SandroTosi





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