[Python-modules-team] Bug#934806: python3-scipy: test_nan_inputs hangs on hppa, riscv64, sparc64

Drew Parsons dparsons at debian.org
Thu Aug 15 09:32:56 BST 2019


Package: python3-scipy
Version: 1.3.1-1exp1
Severity: normal
Control: forwarded -1 https://github.com/scipy/scipy/issues/10656

hppa, riscv64, sparc64 are hanging on the same built-time test,
stopping at test_nan_inputs[iv]:

../../debian/python3-scipy/usr/lib/python3.7/dist-packages/scipy/special/tests/test_nan_inputs.py::test_nan_inputs[itmodstruve0]` PASSED [ 89%]
../../debian/python3-scipy/usr/lib/python3.7/dist-packages/scipy/special/tests/test_nan_inputs.py::test_nan_inputs[itstruve0] PASSED [ 89%]
../../debian/python3-scipy/usr/lib/python3.7/dist-packages/scipy/special/tests/test_nan_inputs.py::test_nan_inputs[iv]
E: Build killed with signal TERM after 600 minutes of inactivity

Since the failing test is the same on each architrecture, it suggests
this might be a scipy bug which is fixable.

Upstream has acknowledged it in Issue#10656, hopefully they'll have a
fix soon.


-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.19.0-5-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_WARN, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-scipy depends on:
ii  libatlas3-base [liblapack.so.3]     3.10.3-8
ii  libblas3 [libblas.so.3]             3.8.0-2
ii  libc6                               2.28-10
ii  libgcc1                             1:9.1.0-10
ii  libgfortran5                        9.1.0-10
ii  liblapack3 [liblapack.so.3]         3.8.0-2
ii  liblbfgsb0                          3.0+dfsg.3-5
ii  libopenblas-base [liblapack.so.3]   0.3.6+ds-1
ii  libquadmath0                        9.1.0-10
ii  libstdc++6                          9.1.0-10
ii  python3                             3.7.3-1
ii  python3-decorator                   4.3.0-1.1
ii  python3-numpy [python3-numpy-abi9]  1:1.16.2-1

Versions of packages python3-scipy recommends:
ii  g++                   4:8.3.0-1
ii  g++-7 [c++-compiler]  7.4.0-10
ii  g++-8 [c++-compiler]  8.3.0-19
ii  python3-pil           6.1.0-1

Versions of packages python3-scipy suggests:
ii  python-scipy-doc  1.3.1-1exp1

-- no debconf information



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