[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_beta #64185
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Aug 30 19:56:29 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_beta/64185/>
------------------------------------------
[...truncated 3543 lines...]
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dolfin.h usability... no
checking dolfin.h presence... no
checking for dolfin.h... no
configure: WARNING: dolfin headers could not be found, som functionalities will be disabled, don't worry your package will still be working, though.
configure: creating ./config.status
config.status: creating Makefile
make[1]: Entering directory '/tmp/oct-hoiZJX/src'
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_refine.cc -Wl,-z,relro -Wl,--as-needed
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_read.cc -Wl,-z,relro -Wl,--as-needed
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_write.cc -Wl,-z,relro -Wl,--as-needed
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_refine.cc -o mshm_refine.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_read.cc -o mshm_dolfin_read.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_write.cc -o mshm_dolfin_write.o
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_dolfin_read.oct mshm_dolfin_read.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_refine.oct mshm_refine.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_dolfin_write.oct mshm_dolfin_write.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
make[1]: Leaving directory '/tmp/oct-hoiZJX/src'
copyfile /tmp/oct-hoiZJX/./src/mshm_dolfin_read.oct /tmp/oct-hoiZJX/./src/mshm_dolfin_write.oct /tmp/oct-hoiZJX/./src/mshm_refine.oct /tmp/oct-hoiZJX/./inst/x86_64-pc-linux-gnu-api-v50+
For information about changes from previous versions of the msh package, run 'news msh'.
/usr/share/octave/debian/dh/octave-pkg-helper
dh_install --package=octave-msh
( cd ./debian/octave-msh/usr/share/octave/packages/msh-1.0.10/packinfo ; rm -f COPYING ChangeLog )
if [ -d doc ] ; then \
dh_installdocs -poctave-msh; \
rm -rf debian/octave-msh/usr/share/octave/packages/*/doc ; \
fi
[ -e PKG_ADD ] && mv PKG_ADD PKG_ADD.bak
/usr/share/cdbs/1/class/octave-pkg.mk:134: recipe for target 'check-pkg' failed
make: [check-pkg] Error 1 (ignored)
Checking package...
Checking m files ...
[msh3m_submesh]
PASSES 3 out of 3 tests
[msh3m_structured_mesh]
PASSES 5 out of 5 tests
[msh3m_nodes_on_faces]
PASSES 4 out of 4 tests
[msh3m_join_structured_mesh]
PASSES 4 out of 4 tests
[msh3m_geometrical_properties]
PASSES 4 out of 4 tests
[msh2m_topological_properties]
PASSES 3 out of 3 tests
[msh2m_submesh]
PASSES 1 out of 1 test
[msh2m_structured_mesh]
warning: using continuation marker \ outside of double quoted strings is deprecated and will be removed in a future version of Octave
warning: using continuation marker \ outside of double quoted strings is deprecated and will be removed in a future version of Octave
PASSES 1 out of 1 test
[msh2m_nodes_on_sides]
PASSES 1 out of 1 test
[msh2m_join_structured_mesh]
PASSES 1 out of 1 test
[msh2m_gmsh]
PASSES 1 out of 1 test
[msh2m_geometrical_properties]
PASSES 1 out of 1 test
Checking CC files ...
[mshm_dolfin_write]
***** test
x = y = z = linspace (0, 1, 2);
msh = msh3m_structured_mesh (x, y, z, 1, [1 : 6]);
mshm_dolfin_write (msh, "msh");
msh = mshm_dolfin_read ("msh.xml");
p = [ 0 0 1 1 0 0 1 1
0 1 0 1 0 1 0 1
0 0 0 0 1 1 1 1];
assert (msh.p, p)
t = [ 1 3 1 2 3 3
2 5 3 3 6 4
3 6 5 4 7 6
6 7 6 6 8 8
1 1 1 1 1 1];
assert (msh.t, t)
e = [1 1 5 3 1 1 2 2 6 3 4 3
2 2 6 5 5 3 4 3 7 7 6 4
6 3 7 7 6 5 6 4 8 8 8 8
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
1 5 6 3 1 3 4 5 6 2 4 2];
assert (msh.e, e)
!!!!! test failed
mshm_dolfn_write: the msh package was built without support for dolfin (dolfin.h required)
[mshm_refine]
***** test
x = y = linspace (0, 1, 2);
msh = msh2m_structured_mesh (x, y, 1, [1 : 4]);
msh.t (4, 2) = 2;
msh_r = mshm_refine (msh);
msh_rr = mshm_refine (msh_r);
p = [ 0.00000 0.00000 1.00000 1.00000 0.50000 0.50000 1.00000 0.00000 0.50000
0.00000 1.00000 0.00000 1.00000 0.50000 0.00000 0.50000 0.50000 1.00000];
assert (msh_rr.p, p)
t = [ 1 3 3 4 1 2 2 4
5 5 5 5 5 5 5 5
6 6 7 7 8 8 9 9
1 1 1 1 2 2 2 2];
assert (msh_rr.t, t)
e =[ 1 3 3 4 1 2 2 4
6 6 7 7 8 8 9 9
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
1 1 2 2 4 4 3 3
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0];
assert (msh_rr.e, e)
!!!!! test failed
mshm_refine: the msh package was built without support for dolfin (dolfin.h required)
[mshm_dolfin_read]
***** test
x = y = z = linspace (0, 1, 2);
msh = msh3m_structured_mesh (x, y, z, 1, [1 : 6]);
mshm_dolfin_write (msh, "msh");
msh = mshm_dolfin_read ("msh.xml");
p = [ 0 0 1 1 0 0 1 1
0 1 0 1 0 1 0 1
0 0 0 0 1 1 1 1];
assert (msh.p, p)
t = [ 1 3 1 2 3 3
2 5 3 3 6 4
3 6 5 4 7 6
6 7 6 6 8 8
1 1 1 1 1 1];
assert (msh.t, t)
e = [1 1 5 3 1 1 2 2 6 3 4 3
2 2 6 5 5 3 4 3 7 7 6 4
6 3 7 7 6 5 6 4 8 8 8 8
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
1 5 6 3 1 3 4 5 6 2 4 2];
assert (msh.e, e)
!!!!! test failed
mshm_dolfn_write: the msh package was built without support for dolfin (dolfin.h required)
[ -e PKG_ADD.bak ] && mv PKG_ADD.bak PKG_ADD
/usr/share/cdbs/1/class/octave-pkg.mk:134: recipe for target 'check-pkg' failed
make: [check-pkg] Error 1 (ignored)
rmdir --ignore-fail-on-non-empty -p \
/tmp/buildd/octave-msh-1.0.10/debian/octave-msh/usr/share/octave/packages \
/tmp/buildd/octave-msh-1.0.10/debian/octave-msh/usr/lib/x86_64-linux-gnu/octave/packages
dh_installdocs -poctave-msh ./NEWS
dh_installexamples -poctave-msh
dh_installman -poctave-msh
dh_installinfo -poctave-msh
dh_installmenu -poctave-msh
dh_installcron -poctave-msh
dh_installinit -poctave-msh
dh_installdebconf -poctave-msh
dh_installemacsen -poctave-msh
dh_installcatalogs -poctave-msh
dh_installpam -poctave-msh
dh_installlogrotate -poctave-msh
dh_installlogcheck -poctave-msh
dh_installchangelogs -poctave-msh
dh_installudev -poctave-msh
dh_lintian -poctave-msh
dh_bugfiles -poctave-msh
dh_install -poctave-msh
dh_link -poctave-msh
dh_installmime -poctave-msh
dh_installgsettings -poctave-msh
dh_strip -poctave-msh
dh_strip_nondeterminism
dh_compress -poctave-msh
dh_fixperms -poctave-msh
dh_makeshlibs -poctave-msh
dh_installdeb -poctave-msh
dh_perl -poctave-msh
dh_shlibdeps -poctave-msh
dh_gencontrol -poctave-msh
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -poctave-msh
dh_builddeb -poctave-msh
dpkg-deb: building package 'octave-msh-dbgsym' in '../octave-msh-dbgsym_1.0.10-1_amd64.deb'.
dpkg-deb: building package 'octave-msh' in '../octave-msh_1.0.10-1_amd64.deb'.
dpkg-genbuildinfo >../octave-msh_1.0.10-1_amd64.buildinfo
dpkg-distaddfile octave-msh_1.0.10-1_amd64.buildinfo math optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges -b >../octave-msh_1.0.10-1_amd64.changes
dpkg-genchanges: warning: package octave-msh-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only upload (no source code included)
dpkg-source --after-build octave-msh-1.0.10
dpkg-buildpackage: binary-only upload (no source included)
I: user script /var/cache/pbuilder/build//48507/tmp/hooks/B01_cleanup starting
I: user script /var/cache/pbuilder/build//48507/tmp/hooks/B01_cleanup finished
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//48507 and its subdirectories
I: Current time: lundi 31 août 2015, 09:56:28 (UTC+1400)
I: pbuilder-time-stamp: 1440964588
+ false
+ set +x
Format: 1.8
Date: Thu, 27 Feb 2014 16:37:08 +0000
Source: octave-msh
Binary: octave-msh
Architecture: amd64
Version: 1.0.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Octave Group <pkg-octave-devel at lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebastien at debian.org>
Description:
octave-msh - create and manage meshes for FE or FV solvers in Octave
Changes:
octave-msh (1.0.10-1) unstable; urgency=medium
.
* Imported Upstream version 1.0.10
* debian/copyright: reflect upstream changes.
* Update Build-Conflicts against dolfin to version 1.3.
Hopefully dolfin will soon be fixed and we'll re-enable the dolfin support.
* configure-script-source.patch: new patch, adds source of configure script.
Checksums-Sha1:
2f6db5e9b100397fe948cf344f4e12ced4e120cd 602558 octave-msh-dbgsym_1.0.10-1_amd64.deb
4dd3f338df9535e69460b621d4be24e8fbe0445b 11970 octave-msh_1.0.10-1_amd64.buildinfo
3b9d0aa3874d13bc2ba8aa43350969f36c2e30c6 32744 octave-msh_1.0.10-1_amd64.deb
Checksums-Sha256:
6112ba29ce530008486d421b181553b93db3cd5eb88f82ae75ff0a1819da8801 602558 octave-msh-dbgsym_1.0.10-1_amd64.deb
f4fc5025806d50a77433c4cc060b45e95cda16dfb6f9f45cce65ac1d6d60597a 11970 octave-msh_1.0.10-1_amd64.buildinfo
2947cc4855e1e287248adf531be5fa42f50fbdd85ff25290594558d6810cf50e 32744 octave-msh_1.0.10-1_amd64.deb
Files:
47c1585a738063976ae625cc46dff261 602558 debugsym extra octave-msh-dbgsym_1.0.10-1_amd64.deb
881fe52e429000ffc31de0454b438f47 11970 math optional octave-msh_1.0.10-1_amd64.buildinfo
63d219d3eee167f2d8be0057a205bdc3 32744 math optional octave-msh_1.0.10-1_amd64.deb
rm: missing operand
Try 'rm --help' for more information.
/srv/reproducible-results/tmp.k0TR6Po3cr/tmp.LG62sZM0Uy: 81.6% -- replaced with /srv/reproducible-results/tmp.k0TR6Po3cr/tmp.LG62sZM0Uy.gz
INFO: Starting at 2015-08-30 19:56:29.045755
INFO: Finished at 2015-08-30 19:56:29.051149, took: 0:00:00.005402
Sun 30 Aug 19:56:29 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-vD08t88c, which will now be removed.
Build step 'Execute shell' marked build as failure
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