[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_delta #29895
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Aug 30 20:49:31 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_delta/29895/>
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[...truncated 3533 lines...]
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dolfin.h usability... no
checking dolfin.h presence... no
checking for dolfin.h... no
configure: WARNING: dolfin headers could not be found, som functionalities will be disabled, don't worry your package will still be working, though.
configure: creating ./config.status
config.status: creating Makefile
make[1]: Entering directory '/tmp/oct-fmVpKT/src'
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_refine.cc -Wl,-z,relro -Wl,--as-needed
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_read.cc -Wl,-z,relro -Wl,--as-needed
/usr/bin/mkoctfile --verbose -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_write.cc -Wl,-z,relro -Wl,--as-needed
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_refine.cc -o mshm_refine.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_read.cc -o mshm_dolfin_read.o
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-4.0.0/octave/.. -I/usr/include/octave-4.0.0/octave -I/usr/include/hdf5/serial -I/usr/include/mpi -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 mshm_dolfin_write.cc -o mshm_dolfin_write.o
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_dolfin_read.oct mshm_dolfin_read.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_dolfin_write.oct mshm_dolfin_write.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
g++ -shared -Wl,-Bsymbolic -Wdate-time -o mshm_refine.oct mshm_refine.o -Wl,-z,relro -Wl,--as-needed -L/usr/lib/x86_64-linux-gnu/octave/4.0.0 -L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-z,relro -Wl,--as-needed
make[1]: Leaving directory '/tmp/oct-fmVpKT/src'
copyfile /tmp/oct-fmVpKT/./src/mshm_dolfin_read.oct /tmp/oct-fmVpKT/./src/mshm_dolfin_write.oct /tmp/oct-fmVpKT/./src/mshm_refine.oct /tmp/oct-fmVpKT/./inst/x86_64-pc-linux-gnu-api-v50+
For information about changes from previous versions of the msh package, run 'news msh'.
/usr/share/octave/debian/dh/octave-pkg-helper
dh_install --package=octave-msh
( cd ./debian/octave-msh/usr/share/octave/packages/msh-1.0.10/packinfo ; rm -f COPYING ChangeLog )
if [ -d doc ] ; then \
dh_installdocs -poctave-msh; \
rm -rf debian/octave-msh/usr/share/octave/packages/*/doc ; \
fi
[ -e PKG_ADD ] && mv PKG_ADD PKG_ADD.bak
/usr/share/cdbs/1/class/octave-pkg.mk:134: recipe for target 'check-pkg' failed
make: [check-pkg] Error 1 (ignored)
Checking package...
Checking m files ...
[msh3m_submesh]
PASSES 3 out of 3 tests
[msh3m_structured_mesh]
PASSES 5 out of 5 tests
[msh3m_nodes_on_faces]
PASSES 4 out of 4 tests
[msh3m_join_structured_mesh]
PASSES 4 out of 4 tests
[msh3m_geometrical_properties]
PASSES 4 out of 4 tests
[msh2m_topological_properties]
PASSES 3 out of 3 tests
[msh2m_submesh]
PASSES 1 out of 1 test
[msh2m_structured_mesh]
warning: using continuation marker \ outside of double quoted strings is deprecated and will be removed in a future version of Octave
warning: using continuation marker \ outside of double quoted strings is deprecated and will be removed in a future version of Octave
PASSES 1 out of 1 test
[msh2m_nodes_on_sides]
PASSES 1 out of 1 test
[msh2m_join_structured_mesh]
PASSES 1 out of 1 test
[msh2m_gmsh]
PASSES 1 out of 1 test
[msh2m_geometrical_properties]
PASSES 1 out of 1 test
Checking CC files ...
[mshm_dolfin_write]
***** test
x = y = z = linspace (0, 1, 2);
msh = msh3m_structured_mesh (x, y, z, 1, [1 : 6]);
mshm_dolfin_write (msh, "msh");
msh = mshm_dolfin_read ("msh.xml");
p = [ 0 0 1 1 0 0 1 1
0 1 0 1 0 1 0 1
0 0 0 0 1 1 1 1];
assert (msh.p, p)
t = [ 1 3 1 2 3 3
2 5 3 3 6 4
3 6 5 4 7 6
6 7 6 6 8 8
1 1 1 1 1 1];
assert (msh.t, t)
e = [1 1 5 3 1 1 2 2 6 3 4 3
2 2 6 5 5 3 4 3 7 7 6 4
6 3 7 7 6 5 6 4 8 8 8 8
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
1 5 6 3 1 3 4 5 6 2 4 2];
assert (msh.e, e)
!!!!! test failed
mshm_dolfn_write: the msh package was built without support for dolfin (dolfin.h required)
[mshm_refine]
***** test
x = y = linspace (0, 1, 2);
msh = msh2m_structured_mesh (x, y, 1, [1 : 4]);
msh.t (4, 2) = 2;
msh_r = mshm_refine (msh);
msh_rr = mshm_refine (msh_r);
p = [ 0.00000 0.00000 1.00000 1.00000 0.50000 0.50000 1.00000 0.00000 0.50000
0.00000 1.00000 0.00000 1.00000 0.50000 0.00000 0.50000 0.50000 1.00000];
assert (msh_rr.p, p)
t = [ 1 3 3 4 1 2 2 4
5 5 5 5 5 5 5 5
6 6 7 7 8 8 9 9
1 1 1 1 2 2 2 2];
assert (msh_rr.t, t)
e =[ 1 3 3 4 1 2 2 4
6 6 7 7 8 8 9 9
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0
1 1 2 2 4 4 3 3
0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0];
assert (msh_rr.e, e)
!!!!! test failed
mshm_refine: the msh package was built without support for dolfin (dolfin.h required)
[mshm_dolfin_read]
***** test
x = y = z = linspace (0, 1, 2);
msh = msh3m_structured_mesh (x, y, z, 1, [1 : 6]);
mshm_dolfin_write (msh, "msh");
msh = mshm_dolfin_read ("msh.xml");
p = [ 0 0 1 1 0 0 1 1
0 1 0 1 0 1 0 1
0 0 0 0 1 1 1 1];
assert (msh.p, p)
t = [ 1 3 1 2 3 3
2 5 3 3 6 4
3 6 5 4 7 6
6 7 6 6 8 8
1 1 1 1 1 1];
assert (msh.t, t)
e = [1 1 5 3 1 1 2 2 6 3 4 3
2 2 6 5 5 3 4 3 7 7 6 4
6 3 7 7 6 5 6 4 8 8 8 8
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0
1 5 6 3 1 3 4 5 6 2 4 2];
assert (msh.e, e)
!!!!! test failed
mshm_dolfn_write: the msh package was built without support for dolfin (dolfin.h required)
[ -e PKG_ADD.bak ] && mv PKG_ADD.bak PKG_ADD
/usr/share/cdbs/1/class/octave-pkg.mk:134: recipe for target 'check-pkg' failed
make: [check-pkg] Error 1 (ignored)
rmdir --ignore-fail-on-non-empty -p \
/tmp/buildd/octave-msh-1.0.10/debian/octave-msh/usr/share/octave/packages \
/tmp/buildd/octave-msh-1.0.10/debian/octave-msh/usr/lib/x86_64-linux-gnu/octave/packages
dh_installdocs -poctave-msh ./NEWS
dh_installexamples -poctave-msh
dh_installman -poctave-msh
dh_installinfo -poctave-msh
dh_installmenu -poctave-msh
dh_installcron -poctave-msh
dh_installinit -poctave-msh
dh_installdebconf -poctave-msh
dh_installemacsen -poctave-msh
dh_installcatalogs -poctave-msh
dh_installpam -poctave-msh
dh_installlogrotate -poctave-msh
dh_installlogcheck -poctave-msh
dh_installchangelogs -poctave-msh
dh_installudev -poctave-msh
dh_lintian -poctave-msh
dh_bugfiles -poctave-msh
dh_install -poctave-msh
dh_link -poctave-msh
dh_installmime -poctave-msh
dh_installgsettings -poctave-msh
dh_strip -poctave-msh
dh_strip_nondeterminism
dh_compress -poctave-msh
dh_fixperms -poctave-msh
dh_makeshlibs -poctave-msh
dh_installdeb -poctave-msh
dh_perl -poctave-msh
dh_shlibdeps -poctave-msh
dh_gencontrol -poctave-msh
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -poctave-msh
dh_builddeb -poctave-msh
dpkg-deb: building package 'octave-msh-dbgsym' in '../octave-msh-dbgsym_1.0.10-1_amd64.deb'.
dpkg-deb: building package 'octave-msh' in '../octave-msh_1.0.10-1_amd64.deb'.
dpkg-genbuildinfo >../octave-msh_1.0.10-1_amd64.buildinfo
dpkg-distaddfile octave-msh_1.0.10-1_amd64.buildinfo math optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges -b >../octave-msh_1.0.10-1_amd64.changes
dpkg-genchanges: warning: package octave-msh-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only upload (no source code included)
dpkg-source --after-build octave-msh-1.0.10
dpkg-buildpackage: binary-only upload (no source included)
I: user script /var/cache/pbuilder/build//15105/tmp/hooks/B01_cleanup starting
I: user script /var/cache/pbuilder/build//15105/tmp/hooks/B01_cleanup finished
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//15105 and its subdirectories
I: Current time: lundi 31 août 2015, 10:49:31 (UTC+1400)
I: pbuilder-time-stamp: 1440967771
+ false
+ set +x
Format: 1.8
Date: Thu, 27 Feb 2014 16:37:08 +0000
Source: octave-msh
Binary: octave-msh
Architecture: amd64
Version: 1.0.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Octave Group <pkg-octave-devel at lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebastien at debian.org>
Description:
octave-msh - create and manage meshes for FE or FV solvers in Octave
Changes:
octave-msh (1.0.10-1) unstable; urgency=medium
.
* Imported Upstream version 1.0.10
* debian/copyright: reflect upstream changes.
* Update Build-Conflicts against dolfin to version 1.3.
Hopefully dolfin will soon be fixed and we'll re-enable the dolfin support.
* configure-script-source.patch: new patch, adds source of configure script.
Checksums-Sha1:
fe46ed290150563f5f672a7e4aaca20004a8fbac 536784 octave-msh-dbgsym_1.0.10-1_amd64.deb
d90f9c7c637610266f4005e41669de7867bb2b91 11911 octave-msh_1.0.10-1_amd64.buildinfo
8fa044ae1d85146ac760f1532ba42baecc88e001 32706 octave-msh_1.0.10-1_amd64.deb
Checksums-Sha256:
a17f963027f31281aac442a5e8bf69f05a255ddb8053113aaaa56a6246e496be 536784 octave-msh-dbgsym_1.0.10-1_amd64.deb
c5a261e96852cd04152fec28563373edd92d96ebfe591a44466ad64d32372723 11911 octave-msh_1.0.10-1_amd64.buildinfo
d2b38f9538c4fab8339156def2ed347a6451323c95bb49c110e6f36ea2e855c9 32706 octave-msh_1.0.10-1_amd64.deb
Files:
e6f174d7aaa36fd4de48c0d3cb3b32d4 536784 debugsym extra octave-msh-dbgsym_1.0.10-1_amd64.deb
da8664aa8bb99c0c56a0e0fcf29fc505 11911 math optional octave-msh_1.0.10-1_amd64.buildinfo
e23efd93b57189e3688e48e23d30a69f 32706 math optional octave-msh_1.0.10-1_amd64.deb
rm: missing operand
Try 'rm --help' for more information.
/srv/reproducible-results/tmp.Xgo8kBQ322/tmp.WIjmPlkUvT: 81.6% -- replaced with /srv/reproducible-results/tmp.Xgo8kBQ322/tmp.WIjmPlkUvT.gz
INFO: Starting at 2015-08-30 20:49:31.232547
INFO: Finished at 2015-08-30 20:49:31.239538, took: 0:00:00.007003
Sun 30 Aug 20:49:31 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-VWucUveb, which will now be removed.
Build step 'Execute shell' marked build as failure
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