[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_epsilon #28293

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Sun Aug 30 23:40:26 UTC 2015 

See <https://jenkins.debian.net/job/reproducible_builder_epsilon/28293/>

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[...truncated 1660 lines...]
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
disorderfs is already the newest version.
fakeroot is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Copying source file
I: copying [r-bioc-biocgenerics_0.14.0-1.dsc]
I: copying [./r-bioc-biocgenerics_0.14.0.orig.tar.gz]
I: copying [./r-bioc-biocgenerics_0.14.0-1.debian.tar.xz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made sam 09 mai 2015 19:31:42 GMT-14 using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-biocgenerics_0.14.0-1.dsc
dpkg-source: info: extracting r-bioc-biocgenerics in r-bioc-biocgenerics-0.14.0
dpkg-source: info: unpacking r-bioc-biocgenerics_0.14.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-biocgenerics_0.14.0-1.debian.tar.xz
I: Building the package
W: no hooks of type A found -- ignoring
I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" dpkg-buildpackage -us -uc  -b -rfakeroot
dpkg-buildpackage: source package r-bioc-biocgenerics
dpkg-buildpackage: source version 0.14.0-1
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Andreas Tille <tille at debian.org>
 dpkg-source --before-build r-bioc-biocgenerics-0.14.0
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
test -x debian/rules
dh_clean 
if test -d src; then				\
		find src -regex ".*\.o" |               \
                        xargs --no-run-if-empty -r rm;          \
	fi
rm -f config.log config.status
 debian/rules build
test -x debian/rules
mkdir -p "."
 fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep 
dh_installdirs -A 
mkdir -p "."
dh_installdirs		usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-bioc-biocgenerics.substvars
if test -f /usr/bin/xvfb-run; then 			\
		 xvfb-run -a 			\
			R CMD INSTALL -l /tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/lib/R/site-library --clean     \
				 .   	\
				"--built-timestamp=\"Sat, 09 May 2015 07:29:27 +0200\""   	        \
				;                               \
	else							\
		 R CMD INSTALL -l /tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/lib/R/site-library 	\
				--clean  .  \
				"--built-timestamp=\"Sat, 09 May 2015 07:29:27 +0200\""   	        \
				;                               \
	fi
* installing *source* package ‘BiocGenerics’ ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for ‘append’ in package ‘BiocGenerics’
Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’
Creating a new generic function for ‘as.vector’ in package ‘BiocGenerics’
Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’
Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’
Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’
Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’
Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’
Creating a new generic function for ‘eval’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’
Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’
Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’
Creating a new generic function for ‘Find’ in package ‘BiocGenerics’
Creating a new generic function for ‘Map’ in package ‘BiocGenerics’
Creating a new generic function for ‘Position’ in package ‘BiocGenerics’
Creating a new generic function for ‘get’ in package ‘BiocGenerics’
Creating a new generic function for ‘mget’ in package ‘BiocGenerics’
Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’
Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘match’ in package ‘BiocGenerics’
Creating a new generic function for ‘order’ in package ‘BiocGenerics’
Creating a new generic function for ‘paste’ in package ‘BiocGenerics’
Creating a new generic function for ‘rank’ in package ‘BiocGenerics’
Creating a new generic function for ‘rep.int’ in package ‘BiocGenerics’
Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’
Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’
Creating a new generic function for ‘union’ in package ‘BiocGenerics’
Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’
Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’
Creating a new generic function for ‘sort’ in package ‘BiocGenerics’
Creating a new generic function for ‘table’ in package ‘BiocGenerics’
Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘unique’ in package ‘BiocGenerics’
Creating a new generic function for ‘unlist’ in package ‘BiocGenerics’
Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’
Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterCall’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterApply’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterApplyLB’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterEvalQ’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterExport’ in package ‘BiocGenerics’
Creating a new generic function for ‘clusterMap’ in package ‘BiocGenerics’
Creating a new generic function for ‘parLapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘parSapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘parApply’ in package ‘BiocGenerics’
Creating a new generic function for ‘parRapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘parCapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘parLapplyLB’ in package ‘BiocGenerics’
Creating a new generic function for ‘parSapplyLB’ in package ‘BiocGenerics’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BiocGenerics)
rm -vf /tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/lib/R/site-library/R.css 			\
		/tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/lib/R/site-library/BiocGenerics/COPYING 	\
		/tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/lib/R/site-library/BiocGenerics/LICENSE.txt
if test -f debian/overrides; then 		\
		install -d /tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/share/lintian/overrides ; 		\
		install -m 0644 debian/overrides 	\
			/tmp/buildd/r-bioc-biocgenerics-0.14.0/debian/r-bioc-biocgenerics/usr/share/lintian/overrides/r-bioc-biocgenerics; 	\
	fi
Adding cdbs dependencies to debian/r-bioc-biocgenerics.substvars
dh_installdirs -pr-bioc-biocgenerics 
dh_installdocs -pr-bioc-biocgenerics ./TODO 
dh_installexamples -pr-bioc-biocgenerics 
dh_installman -pr-bioc-biocgenerics  
dh_installinfo -pr-bioc-biocgenerics  
dh_installmenu -pr-bioc-biocgenerics 
dh_installcron -pr-bioc-biocgenerics 
dh_installinit -pr-bioc-biocgenerics  
dh_installdebconf -pr-bioc-biocgenerics 
dh_installemacsen -pr-bioc-biocgenerics   
dh_installcatalogs -pr-bioc-biocgenerics 
dh_installpam -pr-bioc-biocgenerics 
dh_installlogrotate -pr-bioc-biocgenerics 
dh_installlogcheck -pr-bioc-biocgenerics 
dh_installchangelogs -pr-bioc-biocgenerics  
dh_installudev -pr-bioc-biocgenerics 
dh_lintian -pr-bioc-biocgenerics 
dh_bugfiles -pr-bioc-biocgenerics 
dh_install -pr-bioc-biocgenerics  
dh_link -pr-bioc-biocgenerics  
dh_installmime -pr-bioc-biocgenerics 
dh_installgsettings -pr-bioc-biocgenerics 
dh_strip -pr-bioc-biocgenerics  
dh_strip_nondeterminism
dh_compress -pr-bioc-biocgenerics  
dh_fixperms -pr-bioc-biocgenerics  
dh_makeshlibs -pr-bioc-biocgenerics  
dh_installdeb -pr-bioc-biocgenerics 
dh_perl -pr-bioc-biocgenerics 
dh_shlibdeps -pr-bioc-biocgenerics    
dh_gencontrol -pr-bioc-biocgenerics  
dpkg-gencontrol: warning: Depends field of package r-bioc-biocgenerics: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-biocgenerics 
dh_builddeb -pr-bioc-biocgenerics 
dpkg-deb: building package 'r-bioc-biocgenerics' in '../r-bioc-biocgenerics_0.14.0-1_all.deb'.
 dpkg-genbuildinfo  >../r-bioc-biocgenerics_0.14.0-1_amd64.buildinfo
 dpkg-distaddfile r-bioc-biocgenerics_0.14.0-1_amd64.buildinfo gnu-r optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges -b >../r-bioc-biocgenerics_0.14.0-1_amd64.changes
dpkg-genchanges: binary-only upload (no source code included)
 dpkg-source --after-build r-bioc-biocgenerics-0.14.0
dpkg-buildpackage: binary-only upload (no source included)
I: user script /var/cache/pbuilder/build//10047/tmp/hooks/B01_cleanup starting
I: user script /var/cache/pbuilder/build//10047/tmp/hooks/B01_cleanup finished
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//10047 and its subdirectories
I: Current time: lundi 31 août 2015, 13:40:25 (UTC+1400)
I: pbuilder-time-stamp: 1440978025
+ true
+ '[' -f b2/r-bioc-biocgenerics_0.14.0-1_amd64.changes ']'
+ FTBFS=0
+ cat b1/r-bioc-biocgenerics_0.14.0-1_amd64.changes
+ tee -a /srv/reproducible-results/tmp.j9L85mPqpX/tmp.ys9tiok2Te
Format: 1.8
Date: Sat, 09 May 2015 07:29:27 +0200
Source: r-bioc-biocgenerics
Binary: r-bioc-biocgenerics
Architecture: all amd64
Version: 0.14.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
 r-bioc-biocgenerics - generic functions for Bioconductor
Changes:
 r-bioc-biocgenerics (0.14.0-1) unstable; urgency=medium
 .
   * New upstream version
Checksums-Sha1:
 e043cf041d3301de9727bd374acbfa0ff6498156 439978 r-bioc-biocgenerics_0.14.0-1_all.deb
 39be80dca8961ed40180048894e3ed4ba847c4b6 7225 r-bioc-biocgenerics_0.14.0-1_amd64.buildinfo
Checksums-Sha256:
 e452199d64058eb3cdbbeb3b5f967cdbba4a8bf07768c8953016cce54e003469 439978 r-bioc-biocgenerics_0.14.0-1_all.deb
 0ac1a07e3a089c72c66449d0945d21c3d3fae6918cde0df6b9c3cf9e67b08d6d 7225 r-bioc-biocgenerics_0.14.0-1_amd64.buildinfo
Files:
 da1a49e57a6aeedeb49a2ecc34c0bbd1 439978 gnu-r optional r-bioc-biocgenerics_0.14.0-1_all.deb
 038ea384089dd56cf323b49d6a0ec38a 7225 gnu-r optional r-bioc-biocgenerics_0.14.0-1_amd64.buildinfo
+ rm
rm: missing operand
Try 'rm --help' for more information.
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.j9L85mPqpX/tmp.ys9tiok2Te
/srv/reproducible-results/tmp.j9L85mPqpX/tmp.ys9tiok2Te:	 79.3% -- replaced with /srv/reproducible-results/tmp.j9L85mPqpX/tmp.ys9tiok2Te.gz
+ '[' legacy = legacy ']'
+ gen_package_html r-bioc-biocgenerics
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''r-bioc-biocgenerics'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-08-30 23:40:26.227104
INFO: Finished at 2015-08-30 23:40:26.237870, took: 0:00:00.010779
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.j9L85mPqpX
+ false
+ rm -f /tmp/reproducible-lockfile-unstable-amd64-r-bioc-biocgenerics
Sun 30 Aug 23:40:26 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-3MTgRbEw, which will now be removed.
Build step 'Execute shell' marked build as failure

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