[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_7 #293

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Tue Sep 1 16:34:09 UTC 2015 

See <https://jenkins.debian.net/job/reproducible_builder_amd64_7/293/>

------------------------------------------
[...truncated 413 lines...]
++ META_PKGSET[1]=essential
++ META_PKGSET[2]=required
++ META_PKGSET[3]=build-essential
++ META_PKGSET[4]=build-essential-depends
++ META_PKGSET[5]=popcon_top1337-installed-sources
++ META_PKGSET[6]=key_packages
++ META_PKGSET[7]=installed_on_debian.org
++ META_PKGSET[8]=had_a_DSA
++ META_PKGSET[9]=cii-census
++ META_PKGSET[10]=gnome
++ META_PKGSET[11]=gnome_build-depends
++ META_PKGSET[12]=kde
++ META_PKGSET[13]=kde_build-depends
++ META_PKGSET[14]=xfce
++ META_PKGSET[15]=xfce_build-depends
++ META_PKGSET[16]=tails
++ META_PKGSET[17]=tails_build-depends
++ META_PKGSET[18]=grml
++ META_PKGSET[19]=grml_build-depends
++ META_PKGSET[20]=maint_pkg-perl-maintainers
++ META_PKGSET[21]=maint_pkg-java-maintainers
++ META_PKGSET[22]=maint_pkg-haskell-maintainers
++ META_PKGSET[23]=maint_pkg-ruby-extras-maintainers
++ META_PKGSET[24]=maint_pkg-golang-maintainers
++ META_PKGSET[25]=maint_pkg-php-pear
++ META_PKGSET[26]=maint_pkg-javascript-devel
++ META_PKGSET[27]=maint_debian-boot
++ META_PKGSET[28]=maint_debian-ocaml
++ META_PKGSET[29]=maint_debian-x
++ META_PKGSET[30]=maint_lua
+ set -e
++ mktemp --tmpdir=/srv/reproducible-results -d
+ TMPDIR=/srv/reproducible-results/tmp.RdQ3rE9aw5
+ trap cleanup_all INT TERM EXIT
+ cd /srv/reproducible-results/tmp.RdQ3rE9aw5
++ date '+%Y-%m-%d %H:%M'
+ DATE='2015-09-01 14:35'
++ date +%s
+ START=1441118133
++ mktemp --tmpdir=/srv/reproducible-results/tmp.RdQ3rE9aw5
+ RBUILDLOG=/srv/reproducible-results/tmp.RdQ3rE9aw5/tmp.gAHiFl70fp
+ BAD_LOCKFILE=false
+ BUILDER=/
++ dpkg --print-architecture
+ ARCH=amd64
+ '[' 1 = '' ']'
+ '[' 1 = 1 ']'
+ MODE=1
+ SRCPACKAGE=r-bioc-graph
+ SUITE=unstable
+ SAVE_ARTIFACTS=0
+ TMPDIR=/srv/reproducible-results/tmp.WlHJGntNbQ
+ '[' -d /srv/reproducible-results/tmp.WlHJGntNbQ ']'
+ mkdir -p /srv/reproducible-results/tmp.WlHJGntNbQ
+ cd /srv/reproducible-results/tmp.WlHJGntNbQ
+ LOCKFILE=/tmp/reproducible-lockfile-unstable-amd64-r-bioc-graph
+ get_source_package
+ local RESULT
+ schroot --directory /srv/reproducible-results/tmp.WlHJGntNbQ -c source:jenkins-reproducible-unstable apt-get -- --download-only --only-source source r-bioc-graph
+ tee -a /srv/reproducible-results/tmp.RdQ3rE9aw5/tmp.gAHiFl70fp
Reading package lists...
Building dependency tree...
NOTICE: 'r-bioc-graph' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-graph/trunk/
Need to get 967 kB of source archives.
Get:1 http://ftp.de.debian.org/debian/ unstable/main r-bioc-graph 1.46.0-1 (dsc) [2096 B]
Get:2 http://ftp.de.debian.org/debian/ unstable/main r-bioc-graph 1.46.0-1 (tar) [962 kB]
Get:3 http://ftp.de.debian.org/debian/ unstable/main r-bioc-graph 1.46.0-1 (diff) [3584 B]
Fetched 967 kB in 0s (1836 kB/s)
Download complete and in download only mode
+ RESULT=0
+ '[' 0 '!=' 0 ']'
++ ls r-bioc-graph_1.46.0-1.dsc
+ '[' r-bioc-graph_1.46.0-1.dsc = '' ']'
+ '[' 0 '!=' 0 ']'
++ ls r-bioc-graph_1.46.0-1.dsc
+ '[' r-bioc-graph_1.46.0-1.dsc = '' ']'
++ grep '^Version: ' r-bioc-graph_1.46.0-1.dsc
++ head -1
++ egrep -v '(GnuPG v|GnuPG/MacGPG2)'
++ cut -d ' ' -f2-
+ VERSION=1.46.0-1
++ echo 1.46.0-1
++ cut -d : -f2
+ EVERSION=1.46.0-1
+ DBDREPORT=r-bioc-graph_1.46.0-1.debbindiff.html
+ DBDTXT=r-bioc-graph_1.46.0-1.debbindiff.txt
+ BUILDINFO=r-bioc-graph_1.46.0-1_amd64.buildinfo
+ mkdir b1
+ '[' 1 = 1 ']'
+ first_build
+ set -x
++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/tmp.WlHJGntNbQ
+ local TMPCFG=/srv/reproducible-results/tmp.WlHJGntNbQ/pbuilderrc_JfPF
+ cat
+ tee -a /srv/reproducible-results/tmp.RdQ3rE9aw5/tmp.gAHiFl70fp
+ sudo timeout -k 12.1h 12h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/tmp.WlHJGntNbQ/pbuilderrc_JfPF --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/tmp.WlHJGntNbQ/b1 --logfile b1/build.log r-bioc-graph_1.46.0-1.dsc
W: /root/.pbuilderrc does not exist
I: Logging to b1/build.log
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Sep  1 02:35:35 GMT+12 2015
I: pbuilder-time-stamp: 1441118135
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: Mounting /dev/shm
I: Mounting /sys
I: policy-rc.d already exists
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-biocgenerics (>= 0.14.0)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 20221 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on cdbs; however:
  Package cdbs is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.14.0); however:
  Package r-bioc-biocgenerics is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
The following NEW packages will be installed:
  ca-certificates{a} cdbs{a} fontconfig{a} fontconfig-config{a} 
  fonts-dejavu-core{a} gfortran{a} gfortran-5{a} libblas-common{a} 
  libblas-dev{a} libblas3{a} libbz2-dev{a} libcairo2{a} libcurl3{a} 
  libdatrie1{a} libexpat1{a} libfontconfig1{a} libfreetype6{a} 
  libgfortran-5-dev{a} libgfortran3{a} libgnutls-deb0-28{a} 
  libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhogweed4{a} 
  libice6{a} libidn11{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} 
  libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} 
  libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} 
  liblzma-dev{a} libncurses5-dev{a} libnettle6{a} libp11-kit0{a} 
  libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} 
  libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} 
  libpcre32-3{a} libpcrecpp0v5{a} libpixman-1-0{a} libpng12-0{a} 
  libpng12-dev{a} libreadline-dev{a} libreadline6-dev{a} librtmp1{a} 
  libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} 
  libssl1.0.0{a} libtasn1-6{a} libtcl8.6{a} libthai-data{a} libthai0{a} 
  libtiff5{a} libtinfo-dev{a} libtk8.6{a} libx11-6{a} libx11-data{a} 
  libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} 
  libxext6{a} libxft2{a} libxrender1{a} libxss1{a} libxt6{a} openssl{a} 
  r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} ucf{a} unzip{a} 
  x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded.
Need to get 70.5 MB of archives. After unpacking 238 MB will be used.
Writing extended state information...
Get: 1 http://ftp.de.debian.org/debian/ unstable/main libkeyutils1 amd64 1.5.9-5+b1 [12.0 kB]
Get: 2 http://reproducible.alioth.debian.org/debian/ ./ cdbs 0.4.130.0~reproducible3 [76.9 kB]
Get: 3 http://ftp.de.debian.org/debian/ unstable/main libnettle6 amd64 3.1.1-4 [189 kB]
Get: 4 http://ftp.de.debian.org/debian/ unstable/main libhogweed4 amd64 3.1.1-4 [136 kB]
Get: 5 http://ftp.de.debian.org/debian/ unstable/main libp11-kit0 amd64 0.23.1-3 [112 kB]
Get: 6 http://ftp.de.debian.org/debian/ unstable/main libtasn1-6 amd64 4.5-2 [49.6 kB]
Get: 7 http://ftp.de.debian.org/debian/ unstable/main libgnutls-deb0-28 amd64 3.3.17-1 [716 kB]
Get: 8 http://ftp.de.debian.org/debian/ unstable/main libsasl2-modules-db amd64 2.1.26.dfsg1-13 [67.0 kB]
Get: 9 http://ftp.de.debian.org/debian/ unstable/main libsasl2-2 amd64 2.1.26.dfsg1-13 [104 kB]
Get: 10 http://ftp.de.debian.org/debian/ unstable/main libldap-2.4-2 amd64 2.4.42+dfsg-1 [223 kB]
Get: 11 http://ftp.de.debian.org/debian/ unstable/main libexpat1 amd64 2.1.0-7 [80.0 kB]
Get: 12 http://ftp.de.debian.org/debian/ unstable/main libpng12-0 amd64 1.2.50-2+b2 [172 kB]
Get: 13 http://ftp.de.debian.org/debian/ unstable/main libfreetype6 amd64 2.5.2-4 [466 kB]
Get: 14 http://ftp.de.debian.org/debian/ unstable/main ucf all 3.0030 [69.7 kB]
Get: 15 http://ftp.de.debian.org/debian/ unstable/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get: 16 http://ftp.de.debian.org/debian/ unstable/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get: 17 http://ftp.de.debian.org/debian/ unstable/main libfontconfig1 amd64 2.11.0-6.3 [329 kB]
Get: 18 http://ftp.de.debian.org/debian/ unstable/main fontconfig amd64 2.11.0-6.3 [402 kB]
Get: 19 http://ftp.de.debian.org/debian/ unstable/main libgfortran3 amd64 5.2.1-15 [253 kB]
Get: 20 http://ftp.de.debian.org/debian/ unstable/main libgraphite2-3 amd64 1.2.4-3 [57.4 kB]
Get: 21 http://ftp.de.debian.org/debian/ unstable/main x11-common all 1:7.7+9 [287 kB]
Get: 22 http://ftp.de.debian.org/debian/ unstable/main libice6 amd64 2:1.0.9-1+b1 [58.8 kB]
Get: 23 http://ftp.de.debian.org/debian/ unstable/main libthai-data all 0.1.22-2 [161 kB]
Get: 24 http://ftp.de.debian.org/debian/ unstable/main libdatrie1 amd64 0.2.9-2 [34.6 kB]
Get: 25 http://ftp.de.debian.org/debian/ unstable/main libthai0 amd64 0.1.22-2 [47.3 kB]
Get: 26 http://ftp.de.debian.org/debian/ unstable/main libpango-1.0-0 amd64 1.36.8-3 [291 kB]
Get: 27 http://ftp.de.debian.org/debian/ unstable/main libpixman-1-0 amd64 0.32.6-3 [507 kB]
Get: 28 http://ftp.de.debian.org/debian/ unstable/main libxau6 amd64 1:1.0.8-1 [20.7 kB]
Get: 29 http://ftp.de.debian.org/debian/ unstable/main libxdmcp6 amd64 1:1.1.2-1 [26.3 kB]
Get: 30 http://ftp.de.debian.org/debian/ unstable/main libxcb1 amd64 1.10-3+b1 [44.4 kB]
Get: 31 http://ftp.de.debian.org/debian/ unstable/main libx11-data all 2:1.6.3-1 [128 kB]
Get: 32 http://ftp.de.debian.org/debian/ unstable/main libx11-6 amd64 2:1.6.3-1 [742 kB]
Get: 33 http://ftp.de.debian.org/debian/ unstable/main libxcb-render0 amd64 1.10-3+b1 [17.5 kB]
Get: 34 http://ftp.de.debian.org/debian/ unstable/main libxcb-shm0 amd64 1.10-3+b1 [11.5 kB]
Get: 35 http://ftp.de.debian.org/debian/ unstable/main libxext6 amd64 2:1.3.3-1 [52.7 kB]
Get: 36 http://ftp.de.debian.org/debian/ unstable/main libxrender1 amd64 1:0.9.8-1+b1 [31.4 kB]
Get: 37 http://ftp.de.debian.org/debian/ unstable/main libcairo2 amd64 1.14.2-2 [753 kB]
Get: 38 http://ftp.de.debian.org/debian/ unstable/main libharfbuzz0b amd64 1.0.1-1 [524 kB]
Get: 39 http://ftp.de.debian.org/debian/ unstable/main libpangoft2-1.0-0 amd64 1.36.8-3 [213 kB]
Get: 40 http://ftp.de.debian.org/debian/ unstable/main libpangocairo-1.0-0 amd64 1.36.8-3 [200 kB]
Get: 41 http://ftp.de.debian.org/debian/ unstable/main libpaper1 amd64 1.1.24+nmu4 [22.0 kB]
Get: 42 http://ftp.de.debian.org/debian/ unstable/main libpcrecpp0v5 amd64 2:8.35-7.1 [143 kB]
Get: 43 http://ftp.de.debian.org/debian/ unstable/main libsm6 amd64 2:1.2.2-1+b1 [33.6 kB]
Get: 44 http://ftp.de.debian.org/debian/ unstable/main libssh2-1 amd64 1.5.0-2+b1 [133 kB]
Get: 45 http://ftp.de.debian.org/debian/ unstable/main libxft2 amd64 2.3.2-1 [55.4 kB]
Get: 46 http://ftp.de.debian.org/debian/ unstable/main libxss1 amd64 1:1.2.2-1 [17.5 kB]
Get: 47 http://ftp.de.debian.org/debian/ unstable/main libxt6 amd64 1:1.1.4-1+b1 [186 kB]
Get: 48 http://ftp.de.debian.org/debian/ unstable/main libjbig0 amd64 2.1-3.1 [30.7 kB]
Get: 49 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 amd64 1.0.2d-1 [1274 kB]
Get: 50 http://ftp.de.debian.org/debian/ unstable/main libkrb5support0 amd64 1.13.2+dfsg-2 [59.8 kB]
Get: 51 http://ftp.de.debian.org/debian/ unstable/main libk5crypto3 amd64 1.13.2+dfsg-2 [115 kB]
Get: 52 http://ftp.de.debian.org/debian/ unstable/main libkrb5-3 amd64 1.13.2+dfsg-2 [308 kB]
Get: 53 http://ftp.de.debian.org/debian/ unstable/main libgssapi-krb5-2 amd64 1.13.2+dfsg-2 [152 kB]
Get: 54 http://ftp.de.debian.org/debian/ unstable/main libidn11 amd64 1.32-1 [171 kB]
Get: 55 http://ftp.de.debian.org/debian/ unstable/main openssl amd64 1.0.2d-1 [695 kB]
Get: 56 http://ftp.de.debian.org/debian/ unstable/main ca-certificates all 20150426 [208 kB]
Get: 57 http://ftp.de.debian.org/debian/ unstable/main libgfortran-5-dev amd64 5.2.1-15 [287 kB]
Write failed: Broken pipe
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.WlHJGntNbQ/tmp.MUylKzEo6P
/srv/reproducible-results/tmp.WlHJGntNbQ/tmp.MUylKzEo6P:	 42.8% -- replaced with /srv/reproducible-results/tmp.WlHJGntNbQ/tmp.MUylKzEo6P.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html r-bioc-graph
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''r-bioc-graph'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-01 16:34:08.868895
INFO: Finished at 2015-09-01 16:34:08.877282, took: 0:00:00.008398
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.WlHJGntNbQ
+ false
+ rm -f /tmp/reproducible-lockfile-unstable-amd64-r-bioc-graph
Tue  1 Sep 16:34:08 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-F0fRxM3S, which will now be removed.
Build step 'Execute shell' marked build as failure

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