[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_10 #35

jenkins at jenkins.debian.net jenkins at jenkins.debian.net
Mon Sep 7 00:35:43 UTC 2015 

See <https://jenkins.debian.net/job/reproducible_builder_amd64_10/35/>

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ok
All tests successful.
Files=1, Tests=170,  2 wallclock secs ( 0.05 usr  0.01 sys +  1.74 cusr  0.11 csys =  1.91 CPU)
Result: PASS
 fakeroot debian/rules binary
dh binary
   dh_testroot
   dh_prep
   dh_auto_install
	perl Build install --destdir /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl --create_packlist 0
Building Bio-SamTools
make[1]: Entering directory '/tmp/buildd/libbio-samtools-perl-1.41/c_bin'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/tmp/buildd/libbio-samtools-perl-1.41/c_bin'
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Bio/DB/Sam/Sam.so
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Bio/DB/Sam/Sam.bs
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/bam2bedgraph
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Target.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Query.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Alignment.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/PileupWrapper.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Pileup.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/FetchIterator.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/ReadIterator.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/AlignWrapper.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/Segment.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/SamToGBrowse.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/Constants.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_strip
   dh_makeshlibs
   dh_shlibdeps
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libbio-samtools-perl/usr/bin/bam2bedgraph was not linked against libm.so.6 (it uses none of the library's symbols)
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.41-1_amd64.deb'.
dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.41-1_amd64.deb'.
 dpkg-genbuildinfo  >../libbio-samtools-perl_1.41-1_amd64.buildinfo
 dpkg-distaddfile libbio-samtools-perl_1.41-1_amd64.buildinfo perl optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges -b >../libbio-samtools-perl_1.41-1_amd64.changes
dpkg-genchanges: warning: package libbio-samtools-perl-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only upload (no source code included)
 dpkg-source --after-build libbio-samtools-perl-1.41
dpkg-buildpackage: binary-only upload (no source included)
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//40573 and its subdirectories
I: Current time: Sun Sep  6 12:36:04 GMT+12 2015
I: pbuilder-time-stamp: 1441586164
+ true
+ rm /srv/reproducible-results/tmp.cUXY3VDYqu/pbuilderrc_CLtu
++ date -u
Mon Sep  7 00:36:04 UTC 2015 - build #1 for libbio-samtools-perl/testing/amd64 on profitbricks-build2-amd64 done
+ echo 'Mon Sep  7 00:36:04 UTC 2015 - build #1 for libbio-samtools-perl/testing/amd64 on profitbricks-build2-amd64 done'
+ exit 0
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE
/srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE:	 74.7% -- replaced with /srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE.gz
+ '[' 1 = legacy ']'
+ '[' 1 = ng ']'
+ false
+ rm -f /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
Mon Sep  7 00:36:04 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-q2UPublV, which will now be removed.
+ RESULT=0
+ '[' 0 -eq 148 ']'
+ '[' 0 -ne 0 ']'
+ rsync -e 'ssh -p 22' -r profitbricks-build2-amd64.debian.net:/srv/reproducible-results/tmp.cUXY3VDYqu/b1 /srv/reproducible-results/tmp.cUXY3VDYqu/
jenkins_node_wrapper.sh[45887] remote_host called with rsync --server --sender -re.iLsfx . /srv/reproducible-results/tmp.cUXY3VDYqu/b1
+ RESULT=0
+ '[' 0 -ne 0 ']'
+ ls -R /srv/reproducible-results/tmp.cUXY3VDYqu
/srv/reproducible-results/tmp.cUXY3VDYqu:
b1
b2
libbio-samtools-perl_1.41-1.debian.tar.xz
libbio-samtools-perl_1.41-1.dsc
libbio-samtools-perl_1.41.orig.tar.gz
tmp.wDVrj003uJ

/srv/reproducible-results/tmp.cUXY3VDYqu/b1:
build.log
libbio-samtools-perl-dbgsym_1.41-1_amd64.deb
libbio-samtools-perl_1.41-1.debian.tar.xz
libbio-samtools-perl_1.41-1.dsc
libbio-samtools-perl_1.41-1_amd64.buildinfo
libbio-samtools-perl_1.41-1_amd64.changes
libbio-samtools-perl_1.41-1_amd64.deb
libbio-samtools-perl_1.41.orig.tar.gz

/srv/reproducible-results/tmp.cUXY3VDYqu/b2:
+ ssh -p 22 profitbricks-build2-amd64.debian.net 'rm -r /srv/reproducible-results/tmp.cUXY3VDYqu'
jenkins_node_wrapper.sh[45893] remote_host called with rm -r /srv/reproducible-results/tmp.cUXY3VDYqu
+ '[' '!' -f b1/libbio-samtools-perl_1.41-1_amd64.changes ']'
+ '[' -f b1/libbio-samtools-perl_1.41-1_amd64.changes ']'
+ check_for_race_conditions
++ cat /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
+ '[' 29093 -ne 29093 ']'
+ echo =============================================================================
=============================================================================
+ echo 'Re-building libbio-samtools-perl/1.41-1 in testing on amd64 now.'
Re-building libbio-samtools-perl/1.41-1 in testing on amd64 now.
+ echo =============================================================================
=============================================================================
+ '[' ng = legacy ']'
+ ssh -p 22 profitbricks-build1-amd64.debian.net /srv/jenkins/bin/reproducible_build.sh 2 libbio-samtools-perl testing /srv/reproducible-results/tmp.cUXY3VDYqu
ssh_exchange_identification: read: Connection reset by peer
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ
/srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ:	 44.4% -- replaced with /srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html libbio-samtools-perl
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''libbio-samtools-perl'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-07 00:35:42.970076
INFO: Finished at 2015-09-07 00:35:42.980848, took: 0:00:00.010787
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.cUXY3VDYqu
+ false
+ rm -f /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
Mon  7 Sep 00:35:43 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-sudfeJL7, which will now be removed.
Build step 'Execute shell' marked build as failure

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