[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_10 #35
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Mon Sep 7 00:35:43 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_amd64_10/35/>
------------------------------------------
[...truncated 788 lines...]
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
ok 124
ok 125
ok 126
ok 127
ok 128
ok 129
ok 130
ok 131
ok 132
ok 133
ok 134
ok 135
ok 136
ok 137
ok 138
ok 139
ok 140
ok 141
ok 142
ok 143
ok 144
ok 145
ok 146
ok 147
ok 148
ok 149
ok 150
ok 151
ok 152
ok 153
ok 154
ok 155
ok 156
ok 157
ok 158
ok 159
ok 160
ok 161
ok 162
ok 163
ok 164
ok 165
ok 166
ok 167
ok 168
ok 169
ok 170
ok
All tests successful.
Files=1, Tests=170, 2 wallclock secs ( 0.05 usr 0.01 sys + 1.74 cusr 0.11 csys = 1.91 CPU)
Result: PASS
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_auto_install
perl Build install --destdir /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl --create_packlist 0
Building Bio-SamTools
make[1]: Entering directory '/tmp/buildd/libbio-samtools-perl-1.41/c_bin'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/tmp/buildd/libbio-samtools-perl-1.41/c_bin'
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Bio/DB/Sam/Sam.so
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/Bio/DB/Sam/Sam.bs
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/bam2bedgraph
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Target.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Query.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Alignment.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/PileupWrapper.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/Pileup.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/FetchIterator.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/ReadIterator.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Bam/AlignWrapper.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/Segment.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/SamToGBrowse.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.20/Bio/DB/Sam/Constants.pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl
Installing /tmp/buildd/libbio-samtools-perl-1.41/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_strip
dh_makeshlibs
dh_shlibdeps
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libbio-samtools-perl/usr/bin/bam2bedgraph was not linked against libm.so.6 (it uses none of the library's symbols)
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.41-1_amd64.deb'.
dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.41-1_amd64.deb'.
dpkg-genbuildinfo >../libbio-samtools-perl_1.41-1_amd64.buildinfo
dpkg-distaddfile libbio-samtools-perl_1.41-1_amd64.buildinfo perl optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges -b >../libbio-samtools-perl_1.41-1_amd64.changes
dpkg-genchanges: warning: package libbio-samtools-perl-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only upload (no source code included)
dpkg-source --after-build libbio-samtools-perl-1.41
dpkg-buildpackage: binary-only upload (no source included)
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//40573 and its subdirectories
I: Current time: Sun Sep 6 12:36:04 GMT+12 2015
I: pbuilder-time-stamp: 1441586164
+ true
+ rm /srv/reproducible-results/tmp.cUXY3VDYqu/pbuilderrc_CLtu
++ date -u
Mon Sep 7 00:36:04 UTC 2015 - build #1 for libbio-samtools-perl/testing/amd64 on profitbricks-build2-amd64 done
+ echo 'Mon Sep 7 00:36:04 UTC 2015 - build #1 for libbio-samtools-perl/testing/amd64 on profitbricks-build2-amd64 done'
+ exit 0
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE
/srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE: 74.7% -- replaced with /srv/reproducible-results/tmp.KxAQlJUPNq/tmp.VGZsdVtFPE.gz
+ '[' 1 = legacy ']'
+ '[' 1 = ng ']'
+ false
+ rm -f /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
Mon Sep 7 00:36:04 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-q2UPublV, which will now be removed.
+ RESULT=0
+ '[' 0 -eq 148 ']'
+ '[' 0 -ne 0 ']'
+ rsync -e 'ssh -p 22' -r profitbricks-build2-amd64.debian.net:/srv/reproducible-results/tmp.cUXY3VDYqu/b1 /srv/reproducible-results/tmp.cUXY3VDYqu/
jenkins_node_wrapper.sh[45887] remote_host called with rsync --server --sender -re.iLsfx . /srv/reproducible-results/tmp.cUXY3VDYqu/b1
+ RESULT=0
+ '[' 0 -ne 0 ']'
+ ls -R /srv/reproducible-results/tmp.cUXY3VDYqu
/srv/reproducible-results/tmp.cUXY3VDYqu:
b1
b2
libbio-samtools-perl_1.41-1.debian.tar.xz
libbio-samtools-perl_1.41-1.dsc
libbio-samtools-perl_1.41.orig.tar.gz
tmp.wDVrj003uJ
/srv/reproducible-results/tmp.cUXY3VDYqu/b1:
build.log
libbio-samtools-perl-dbgsym_1.41-1_amd64.deb
libbio-samtools-perl_1.41-1.debian.tar.xz
libbio-samtools-perl_1.41-1.dsc
libbio-samtools-perl_1.41-1_amd64.buildinfo
libbio-samtools-perl_1.41-1_amd64.changes
libbio-samtools-perl_1.41-1_amd64.deb
libbio-samtools-perl_1.41.orig.tar.gz
/srv/reproducible-results/tmp.cUXY3VDYqu/b2:
+ ssh -p 22 profitbricks-build2-amd64.debian.net 'rm -r /srv/reproducible-results/tmp.cUXY3VDYqu'
jenkins_node_wrapper.sh[45893] remote_host called with rm -r /srv/reproducible-results/tmp.cUXY3VDYqu
+ '[' '!' -f b1/libbio-samtools-perl_1.41-1_amd64.changes ']'
+ '[' -f b1/libbio-samtools-perl_1.41-1_amd64.changes ']'
+ check_for_race_conditions
++ cat /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
+ '[' 29093 -ne 29093 ']'
+ echo =============================================================================
=============================================================================
+ echo 'Re-building libbio-samtools-perl/1.41-1 in testing on amd64 now.'
Re-building libbio-samtools-perl/1.41-1 in testing on amd64 now.
+ echo =============================================================================
=============================================================================
+ '[' ng = legacy ']'
+ ssh -p 22 profitbricks-build1-amd64.debian.net /srv/jenkins/bin/reproducible_build.sh 2 libbio-samtools-perl testing /srv/reproducible-results/tmp.cUXY3VDYqu
ssh_exchange_identification: read: Connection reset by peer
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ
/srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ: 44.4% -- replaced with /srv/reproducible-results/tmp.cUXY3VDYqu/tmp.wDVrj003uJ.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html libbio-samtools-perl
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''libbio-samtools-perl'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-07 00:35:42.970076
INFO: Finished at 2015-09-07 00:35:42.980848, took: 0:00:00.010787
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.cUXY3VDYqu
+ false
+ rm -f /tmp/reproducible-lockfile-testing-amd64-libbio-samtools-perl
Mon 7 Sep 00:35:43 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-sudfeJL7, which will now be removed.
Build step 'Execute shell' marked build as failure
More information about the Qa-jenkins-scm
mailing list