[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_9 #33
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Mon Sep 7 01:07:50 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_amd64_9/33/>
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[...truncated 774 lines...]
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking for library containing cos... -lm
checking for MMDB_CCIF_Init in -lmmdb2... yes
checking mmdb2/mmdb_manager.h usability... yes
checking mmdb2/mmdb_manager.h presence... yes
checking for mmdb2/mmdb_manager.h... yes
checking for ccp4_banner in -lccp4c... yes
checking ccp4/ccp4_general.h usability... yes
checking ccp4/ccp4_general.h presence... yes
checking for ccp4/ccp4_general.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating ssm.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/tmp/buildd/ssm-1.4'
dh_auto_build -O--dbg-package=libssm2-dbg
make -j1
make[1]: Entering directory '/tmp/buildd/ssm-1.4'
make all-am
make[2]: Entering directory '/tmp/buildd/ssm-1.4'
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_superpose.lo ssm/ssm_superpose.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_superpose.cpp -fPIC -DPIC -o ssm/.libs/ssm_superpose.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_csia.lo ssm/ssm_csia.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_csia.cpp -fPIC -DPIC -o ssm/.libs/ssm_csia.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_vxedge.lo ssm/ssm_vxedge.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_vxedge.cpp -fPIC -DPIC -o ssm/.libs/ssm_vxedge.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_align.lo ssm/ssm_align.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_align.cpp -fPIC -DPIC -o ssm/.libs/ssm_align.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_malign.lo ssm/ssm_malign.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_malign.cpp -fPIC -DPIC -o ssm/.libs/ssm_malign.o
/bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o ssm/ssm_graph.lo ssm/ssm_graph.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c ssm/ssm_graph.cpp -fPIC -DPIC -o ssm/.libs/ssm_graph.o
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -no-undefined -version-info 2:0:0 -Wl,-z,relro -o libssm.la -rpath /usr/lib/x86_64-linux-gnu ssm/ssm_superpose.lo ssm/ssm_csia.lo ssm/ssm_vxedge.lo ssm/ssm_align.lo ssm/ssm_malign.lo ssm/ssm_graph.lo -lmmdb2 -lm
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o ssm/.libs/ssm_superpose.o ssm/.libs/ssm_csia.o ssm/.libs/ssm_vxedge.o ssm/.libs/ssm_align.o ssm/.libs/ssm_malign.o ssm/.libs/ssm_graph.o -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libssm.so.2 -o .libs/libssm.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libssm.so.2" && ln -s "libssm.so.2.0.0" "libssm.so.2")
libtool: link: (cd ".libs" && rm -f "libssm.so" && ln -s "libssm.so.2.0.0" "libssm.so")
libtool: link: ( cd ".libs" && rm -f "libssm.la" && ln -s "../libssm.la" "libssm.la" )
g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-superpose.o `test -f 'superpose.cpp' || echo './'`superpose.cpp
g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-sup_pairwise.o `test -f 'sup_pairwise.cpp' || echo './'`sup_pairwise.cpp
g++ -DHAVE_CONFIG_H -I. -D_ccp4_ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -c -o superpose-sup_multiple.o `test -f 'sup_multiple.cpp' || echo './'`sup_multiple.cpp
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -Wl,-z,relro -o superpose superpose-superpose.o superpose-sup_pairwise.o superpose-sup_multiple.o libssm.la -lmmdb2 -lccp4c -lm
libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -Wl,-z -Wl,relro -o .libs/superpose superpose-superpose.o superpose-sup_pairwise.o superpose-sup_multiple.o ./.libs/libssm.so -lmmdb2 -lccp4c -lm
make[2]: Leaving directory '/tmp/buildd/ssm-1.4'
make[1]: Leaving directory '/tmp/buildd/ssm-1.4'
dh_auto_test -O--dbg-package=libssm2-dbg
make -j1 check
make[1]: Entering directory '/tmp/buildd/ssm-1.4'
make[1]: Leaving directory '/tmp/buildd/ssm-1.4'
fakeroot debian/rules binary
dh binary --with autoreconf --dbg-package=libssm2-dbg
dh_testroot -O--dbg-package=libssm2-dbg
dh_prep -O--dbg-package=libssm2-dbg
dh_auto_install -O--dbg-package=libssm2-dbg
make -j1 install DESTDIR=/tmp/buildd/ssm-1.4/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/tmp/buildd/ssm-1.4'
make[2]: Entering directory '/tmp/buildd/ssm-1.4'
/bin/mkdir -p '/tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/bash ./libtool --mode=install /usr/bin/install -c libssm.la '/tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/libssm.so.2.0.0 /tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libssm.so.2.0.0
libtool: install: (cd /tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libssm.so.2.0.0 libssm.so.2 || { rm -f libssm.so.2 && ln -s libssm.so.2.0.0 libssm.so.2; }; })
libtool: install: (cd /tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libssm.so.2.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.2.0.0 libssm.so; }; })
libtool: install: /usr/bin/install -c .libs/libssm.lai /tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu/libssm.la
libtool: install: warning: remember to run `libtool --finish /usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/tmp/buildd/ssm-1.4/debian/tmp/usr/bin'
/bin/bash ./libtool --mode=install /usr/bin/install -c superpose '/tmp/buildd/ssm-1.4/debian/tmp/usr/bin'
libtool: install: warning: `libssm.la' has not been installed in `/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/superpose /tmp/buildd/ssm-1.4/debian/tmp/usr/bin/superpose
/bin/mkdir -p '/tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
/usr/bin/install -c -m 644 ssm.pc '/tmp/buildd/ssm-1.4/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
/bin/mkdir -p '/tmp/buildd/ssm-1.4/debian/tmp/usr/include/ssm'
/usr/bin/install -c -m 644 ssm/ssm_superpose.h ssm/ssm_csia.h ssm/ssm_vxedge.h ssm/ssm_align.h ssm/ssm_malign.h ssm/ssm_graph.h ssm/ssm_defs.h '/tmp/buildd/ssm-1.4/debian/tmp/usr/include/ssm'
make[2]: Leaving directory '/tmp/buildd/ssm-1.4'
make[1]: Leaving directory '/tmp/buildd/ssm-1.4'
dh_install -O--dbg-package=libssm2-dbg
dh_installdocs -O--dbg-package=libssm2-dbg
dh_installchangelogs -O--dbg-package=libssm2-dbg
dh_perl -O--dbg-package=libssm2-dbg
dh_link -O--dbg-package=libssm2-dbg
dh_strip_nondeterminism -O--dbg-package=libssm2-dbg
dh_compress -O--dbg-package=libssm2-dbg
dh_fixperms -O--dbg-package=libssm2-dbg
dh_strip -O--dbg-package=libssm2-dbg
dh_makeshlibs -O--dbg-package=libssm2-dbg
dh_shlibdeps -O--dbg-package=libssm2-dbg
dh_installdeb -O--dbg-package=libssm2-dbg
dh_gencontrol -O--dbg-package=libssm2-dbg
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--dbg-package=libssm2-dbg
dh_builddeb -O--dbg-package=libssm2-dbg
dpkg-deb: building package 'libssm-bin' in '../libssm-bin_1.4-1~exp1_amd64.deb'.
dpkg-deb: building package 'libssm-dev' in '../libssm-dev_1.4-1~exp1_amd64.deb'.
dpkg-deb: building package 'libssm2-dbg' in '../libssm2-dbg_1.4-1~exp1_amd64.deb'.
dpkg-deb: building package 'libssm2' in '../libssm2_1.4-1~exp1_amd64.deb'.
dpkg-genbuildinfo >../ssm_1.4-1~exp1_amd64.buildinfo
dpkg-distaddfile ssm_1.4-1~exp1_amd64.buildinfo science extra
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges -b >../ssm_1.4-1~exp1_amd64.changes
dpkg-genchanges: binary-only upload (no source code included)
dpkg-source --after-build ssm-1.4
dpkg-buildpackage: binary-only upload (no source included)
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//18785 and its subdirectories
I: Current time: Sun Sep 6 13:08:11 GMT+12 2015
I: pbuilder-time-stamp: 1441588091
+ true
+ rm /srv/reproducible-results/tmp.K6Ovw5CSYb/pbuilderrc_LAhA
++ date -u
Mon Sep 7 01:08:11 UTC 2015 - build #1 for ssm/experimental/amd64 on profitbricks-build2-amd64 done
+ echo 'Mon Sep 7 01:08:11 UTC 2015 - build #1 for ssm/experimental/amd64 on profitbricks-build2-amd64 done'
+ exit 0
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.q5IDqJYg4p/tmp.OBxSJQAiUh
/srv/reproducible-results/tmp.q5IDqJYg4p/tmp.OBxSJQAiUh: 77.9% -- replaced with /srv/reproducible-results/tmp.q5IDqJYg4p/tmp.OBxSJQAiUh.gz
+ '[' 1 = legacy ']'
+ '[' 1 = ng ']'
+ false
+ rm -f /tmp/reproducible-lockfile-experimental-amd64-ssm
Mon Sep 7 01:08:11 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-jLapVJEG, which will now be removed.
+ RESULT=0
+ '[' 0 -eq 148 ']'
+ '[' 0 -ne 0 ']'
+ rsync -e 'ssh -p 22' -r profitbricks-build2-amd64.debian.net:/srv/reproducible-results/tmp.K6Ovw5CSYb/b1 /srv/reproducible-results/tmp.K6Ovw5CSYb/
jenkins_node_wrapper.sh[23522] remote_host called with rsync --server --sender -re.iLsfx . /srv/reproducible-results/tmp.K6Ovw5CSYb/b1
+ RESULT=0
+ '[' 0 -ne 0 ']'
+ ls -R /srv/reproducible-results/tmp.K6Ovw5CSYb
/srv/reproducible-results/tmp.K6Ovw5CSYb:
b1
b2
ssm_1.4-1~exp1.debian.tar.xz
ssm_1.4-1~exp1.dsc
ssm_1.4.orig.tar.gz
tmp.69rlxyWDSH
/srv/reproducible-results/tmp.K6Ovw5CSYb/b1:
build.log
libssm-bin_1.4-1~exp1_amd64.deb
libssm-dev_1.4-1~exp1_amd64.deb
libssm2-dbg_1.4-1~exp1_amd64.deb
libssm2_1.4-1~exp1_amd64.deb
ssm_1.4-1~exp1.debian.tar.xz
ssm_1.4-1~exp1.dsc
ssm_1.4-1~exp1_amd64.buildinfo
ssm_1.4-1~exp1_amd64.changes
ssm_1.4.orig.tar.gz
/srv/reproducible-results/tmp.K6Ovw5CSYb/b2:
+ ssh -p 22 profitbricks-build2-amd64.debian.net 'rm -r /srv/reproducible-results/tmp.K6Ovw5CSYb'
jenkins_node_wrapper.sh[23528] remote_host called with rm -r /srv/reproducible-results/tmp.K6Ovw5CSYb
+ '[' '!' -f b1/ssm_1.4-1~exp1_amd64.changes ']'
+ '[' -f b1/ssm_1.4-1~exp1_amd64.changes ']'
+ check_for_race_conditions
++ cat /tmp/reproducible-lockfile-experimental-amd64-ssm
+ '[' 15959 -ne 15959 ']'
+ echo =============================================================================
=============================================================================
+ echo 'Re-building ssm/1.4-1~exp1 in experimental on amd64 now.'
Re-building ssm/1.4-1~exp1 in experimental on amd64 now.
+ echo =============================================================================
=============================================================================
+ '[' ng = legacy ']'
+ ssh -p 22 profitbricks-build1-amd64.debian.net /srv/jenkins/bin/reproducible_build.sh 2 ssm experimental /srv/reproducible-results/tmp.K6Ovw5CSYb
ssh_exchange_identification: read: Connection reset by peer
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.K6Ovw5CSYb/tmp.69rlxyWDSH
/srv/reproducible-results/tmp.K6Ovw5CSYb/tmp.69rlxyWDSH: 41.2% -- replaced with /srv/reproducible-results/tmp.K6Ovw5CSYb/tmp.69rlxyWDSH.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html ssm
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''ssm'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-07 01:07:50.163312
INFO: Finished at 2015-09-07 01:07:50.170528, took: 0:00:00.007226
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.K6Ovw5CSYb
+ false
+ rm -f /tmp/reproducible-lockfile-experimental-amd64-ssm
Mon 7 Sep 01:07:50 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-b8xZIwEL, which will now be removed.
Build step 'Execute shell' marked build as failure
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