[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_4 #2088

Thu Sep 10 12:08:13 UTC 2015

See <https://jenkins.debian.net/job/reproducible_builder_amd64_4/2088/>

------------------------------------------
[...truncated 7467 lines...]
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/swcntbuilderextension.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/qtaimextension.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/qtaimextension.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/inputfileextension.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/inputfileextension.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/gamessextension.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/extensions/gamessextension.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/residuecolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/residuecolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/atomindexcolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/atomindexcolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/chargecolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/chargecolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/distancecolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/distancecolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/customcolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/customcolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/smartscolor.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/avogadro/1_1/colors/smartscolor.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/bin/avogadro
-- Removed runtime path from "/tmp/buildd/avogadro-1.1.1/debian/tmp/usr/bin/avogadro"
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_eu.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_hu.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_he.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_de.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_hr.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ru.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ja.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_el.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_hi.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ca at valencia.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_da.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_en_AU.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_kn.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ta.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_it.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_en_GB.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_sr.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_pt.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_bg.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_cs.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_id.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_es.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_gl.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_CN.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_tr.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ms.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ko.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_vi.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_pl.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ug.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_sv.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_pt_BR.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_oc.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_fr.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_nl.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ar.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_nb.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_af.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_sl.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_ca.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_th.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_TW.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_sq.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_sk.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_et.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_en_CA.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_uk.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/avogadro/i18n/avogadro_fi.qm
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/applications/avogadro.desktop
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/pixmaps/avogadro-icon.png
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/man/man1/avopkg.1
-- Installing: /tmp/buildd/avogadro-1.1.1/debian/tmp/usr/share/man/man1/avogadro.1
make[1]: Leaving directory '/tmp/buildd/avogadro-1.1.1/obj-x86_64-linux-gnu'
   debian/rules override_dh_install
make[1]: Entering directory '/tmp/buildd/avogadro-1.1.1'
dh_install --list-missing
dh_install: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere
make[1]: Leaving directory '/tmp/buildd/avogadro-1.1.1'
   dh_installdocs -O--parallel
   dh_installchangelogs -O--parallel
   dh_installexamples -O--parallel
   dh_installman -O--parallel
   debian/rules override_dh_python2
make[1]: Entering directory '/tmp/buildd/avogadro-1.1.1'
dh_python2 -ppython-avogadro
W: dh_python2:479: Please add dh-python package to Build-Depends
W: dh_python2:433: public extension linked with libpython2.7: Avogadro.so
dh_numpy -ppython-avogadro
dh_sip
make[1]: Leaving directory '/tmp/buildd/avogadro-1.1.1'
   dh_installmenu -O--parallel
   dh_perl -O--parallel
   dh_link -O--parallel
   dh_strip_nondeterminism -O--parallel
   dh_compress -O--parallel
   dh_fixperms -O--parallel
   debian/rules override_dh_strip
make[1]: Entering directory '/tmp/buildd/avogadro-1.1.1'
dh_strip --dbg-package=avogadro-dbg
make[1]: Leaving directory '/tmp/buildd/avogadro-1.1.1'
   dh_makeshlibs -O--parallel
   dh_shlibdeps -O--parallel
   dh_installdeb -O--parallel
   dh_gencontrol -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package avogadro: unused substitution variable ${sip:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package avogadro-data: unused substitution variable ${sip:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libavogadro1: unused substitution variable ${sip:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libavogadro-dev: unused substitution variable ${sip:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package avogadro-dbg: unused substitution variable ${sip:Depends}
   dh_md5sums -O--parallel
   dh_builddeb -O--parallel
dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.1.1-1~exp1_amd64.deb'.
dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.1.1-1~exp1_amd64.deb'.
dpkg-deb: building package 'avogadro-dbg' in '../avogadro-dbg_1.1.1-1~exp1_amd64.deb'.
dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.1.1-1~exp1_amd64.deb'.
dpkg-deb: building package 'avogadro' in '../avogadro_1.1.1-1~exp1_amd64.deb'.
dpkg-deb: building package 'avogadro-data' in '../avogadro-data_1.1.1-1~exp1_all.deb'.
 dpkg-genbuildinfo  >../avogadro_1.1.1-1~exp1_amd64.buildinfo
 dpkg-distaddfile avogadro_1.1.1-1~exp1_amd64.buildinfo science optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges -b >../avogadro_1.1.1-1~exp1_amd64.changes
dpkg-genchanges: binary-only upload (no source code included)
 dpkg-source --after-build avogadro-1.1.1
dpkg-buildpackage: binary-only upload (no source included)
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//8762 and its subdirectories
I: Current time: Thu Sep 10 00:08:23 GMT+12 2015
I: pbuilder-time-stamp: 1441886903
+ true
+ rm /srv/reproducible-results/tmp.TxncKTfYFG/pbuilderrc_1jBd
++ date -u
Thu Sep 10 12:08:23 UTC 2015 - build #1 for avogadro/experimental/amd64 on profitbricks-build1-amd64 done
+ echo 'Thu Sep 10 12:08:23 UTC 2015 - build #1 for avogadro/experimental/amd64 on profitbricks-build1-amd64 done'
+ exit 0
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.VQyVm0rbkZ/tmp.bIUmPiUe47
/srv/reproducible-results/tmp.VQyVm0rbkZ/tmp.bIUmPiUe47:	 95.2% -- replaced with /srv/reproducible-results/tmp.VQyVm0rbkZ/tmp.bIUmPiUe47.gz
+ '[' 1 = legacy ']'
+ '[' 1 = ng ']'
+ false
+ rm -f /tmp/reproducible-lockfile-experimental-amd64-avogadro
Thu Sep 10 12:08:23 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-7rKFhLxS, which will now be removed.
+ RESULT=0
+ '[' 0 -eq 148 ']'
+ '[' 0 -ne 0 ']'
+ rsync -e 'ssh -p 22' -r profitbricks-build1-amd64.debian.net:/srv/reproducible-results/tmp.TxncKTfYFG/b1 /srv/reproducible-results/tmp.TxncKTfYFG/
+ RESULT=0
+ '[' 0 -ne 0 ']'
+ ls -R /srv/reproducible-results/tmp.TxncKTfYFG
/srv/reproducible-results/tmp.TxncKTfYFG:
avogadro_1.1.0-4.dsc
b1
b2
tmp.KBdBUKQEcq

/srv/reproducible-results/tmp.TxncKTfYFG/b1:
avogadro-data_1.1.1-1~exp1_all.deb
avogadro-dbg_1.1.1-1~exp1_amd64.deb
avogadro_1.1.1-1~exp1.debian.tar.xz
avogadro_1.1.1-1~exp1.dsc
avogadro_1.1.1-1~exp1_amd64.buildinfo
avogadro_1.1.1-1~exp1_amd64.changes
avogadro_1.1.1-1~exp1_amd64.deb
avogadro_1.1.1.orig.tar.gz
build.log
libavogadro-dev_1.1.1-1~exp1_amd64.deb
libavogadro1_1.1.1-1~exp1_amd64.deb
python-avogadro_1.1.1-1~exp1_amd64.deb

/srv/reproducible-results/tmp.TxncKTfYFG/b2:
+ ssh -p 22 profitbricks-build1-amd64.debian.net 'rm -r /srv/reproducible-results/tmp.TxncKTfYFG'
+ set -e
+ '[' 1 -eq 1 ']'
+ cat /srv/reproducible-results/tmp.TxncKTfYFG/b1/build.log
+ '[' '!' -f b1/avogadro_1.1.0-4_amd64.changes ']'
+ '[' -f b1/avogadro_1.1.1-1~exp1_amd64.changes ']'
+ echo 'Version mismatch between main node and first build node, aborting. Please upgrade the schroots...'
+ tee -a /srv/reproducible-results/tmp.TxncKTfYFG/tmp.KBdBUKQEcq
Version mismatch between main node and first build node, aborting. Please upgrade the schroots...
+ FTBFS=0
+ calculate_build_duration
++ date +%s
+ END=1441886885
+ DURATION=866
+ update_db_and_html depwait
+ STATUS=depwait
+ '[' -z 1.1.0-4 ']'
++ sqlite3 -init /var/lib/jenkins/reproducible.init /var/lib/jenkins/reproducible.db 'SELECT status FROM results WHERE package_id='\''21706'\'''
+ local OLD_STATUS=depwait
+ '[' depwait = reproducible ']'
+ '[' depwait '!=' depwait ']'
+ sqlite3 -init /var/lib/jenkins/reproducible.init /var/lib/jenkins/reproducible.db 'REPLACE INTO results (package_id, version, status, build_date, build_duration, builder) VALUES ('\''21706'\'', '\''1.1.0-4'\'', '\''depwait'\'', '\''2015-09-10 11:53'\'', '\''866'\'', '\''amd64_4/2088'\'')'
+ '[' '!' -z 866 ']'
+ sqlite3 -init /var/lib/jenkins/reproducible.init /var/lib/jenkins/reproducible.db 'INSERT INTO stats_build (name, version, suite, architecture, status, build_date, build_duration, builder) VALUES ('\''avogadro'\'', '\''1.1.0-4'\'', '\''experimental'\'', '\''amd64'\'', '\''depwait'\'', '\''2015-09-10 11:53'\'', '\''866'\'', '\''amd64_4/2088'\'')'
+ sqlite3 -init /var/lib/jenkins/reproducible.init /var/lib/jenkins/reproducible.db 'DELETE FROM schedule WHERE package_id='\''21706'\'';'
+ gen_package_html avogadro
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''avogadro'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-10 12:08:12.918372
INFO: Finished at 2015-09-10 12:08:12.928917, took: 0:00:00.010556
+ cd -
+ echo

+ echo 'Successfully updated the database and updated https://reproducible.debian.net/rb-pkg/experimental/amd64/avogadro.html'
Successfully updated the database and updated https://reproducible.debian.net/rb-pkg/experimental/amd64/avogadro.html
+ echo

+ exit 1
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /srv/reproducible-results/tmp.TxncKTfYFG/tmp.KBdBUKQEcq
/srv/reproducible-results/tmp.TxncKTfYFG/tmp.KBdBUKQEcq:	 95.2% -- replaced with /srv/reproducible-results/tmp.TxncKTfYFG/tmp.KBdBUKQEcq.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html avogadro
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''avogadro'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-10 12:08:13.184932
INFO: Finished at 2015-09-10 12:08:13.196594, took: 0:00:00.011675
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.TxncKTfYFG
+ false
+ rm -f /tmp/reproducible-lockfile-experimental-amd64-avogadro
Thu 10 Sep 12:08:13 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-RuPtd2nv, which will now be removed.
Build step 'Execute shell' marked build as failure