[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_2 #2347

Sun Sep 20 16:55:16 UTC 2015

See <https://jenkins.debian.net/job/reproducible_builder_amd64_2/2347/>

------------------------------------------
[...truncated 3711 lines...]
-Setting up r-cran-scales (0.2.5-1) ...
-Setting up r-cran-ggplot2 (1.0.1-1) ...
-Setting up r-cran-gridextra (2.0.0-1) ...
-Setting up r-cran-survival (2.38-3-1) ...
-Setting up r-cran-rpart (4.1-10-1) ...
-Setting up r-cran-latticeextra (0.6-26-1) ...
-Setting up r-cran-hmisc (3.16-0-1) ...
-Setting up r-cran-readxl (0.1.0-1) ...
-Setting up r-cran-zoo (1.7-12-1) ...
-Setting up r-cran-sandwich (2.3-3-1) ...
-Processing triggers for libc-bin (2.19-20) ...
-Processing triggers for systemd (226-3) ...
-Processing triggers for ca-certificates (20150426) ...
+Paramétrage de littler (0.2.3-2) ...
+Paramétrage de r-base-dev (3.2.2-1) ...
+Paramétrage de r-cran-abind (1.4-3-1) ...
+Paramétrage de r-cran-acepack (1.3.3.3-1) ...
+Paramétrage de r-cran-mass (7.3-44-1) ...
+Paramétrage de r-cran-nnet (7.3-11-1) ...
+Paramétrage de r-cran-lattice (0.20-33-1) ...
+Paramétrage de r-cran-nlme (3.1.122-1) ...
+Paramétrage de r-cran-matrix (1.2-2-1) ...
+Paramétrage de r-cran-mgcv (1.8-7-1) ...
+Paramétrage de r-cran-pkgkitten (0.1.3-1) ...
+Paramétrage de r-cran-rcpp (0.12.1-1) ...
+Paramétrage de r-cran-rcppeigen (0.3.2.5.0-1) ...
+Paramétrage de r-cran-minqa (1.2.4-1) ...
+Paramétrage de r-cran-nloptr (1.0.4-1) ...
+Paramétrage de r-cran-lme4 (1.1-9-1) ...
+Paramétrage de r-cran-pbkrtest (0.4-2-1) ...
+Paramétrage de r-cran-sparsem (1.7-1) ...
+Paramétrage de r-cran-matrixmodels (0.4-1-1) ...
+Paramétrage de r-cran-quantreg (5.19-1) ...
+Paramétrage de r-cran-car (2.1-0-1) ...
+Paramétrage de r-cran-chron (2.3-47-1) ...
+Paramétrage de r-cran-class (7.3-14-1) ...
+Paramétrage de r-cran-cluster (2.0.3-1) ...
+Paramétrage de r-cran-colorspace (1.2-4-1) ...
+Paramétrage de r-cran-dichromat (2.0.0-3) ...
+Paramétrage de r-cran-digest (0.6.8-1) ...
+Paramétrage de r-cran-e1071 (1.6-7-1) ...
+Paramétrage de r-cran-foreign (0.8.66-1) ...
+Paramétrage de r-cran-formula (1.2-1-1) ...
+Paramétrage de r-cran-gtable (0.1.2-1.1) ...
+Paramétrage de r-cran-proto (0.3-10-1) ...
+Paramétrage de r-cran-plyr (1.8.3-1) ...
+Paramétrage de r-cran-stringr (0.6.2-2) ...
+Paramétrage de r-cran-reshape2 (1.4-1) ...
+Paramétrage de r-cran-rcolorbrewer (1.1-2-1) ...
+Paramétrage de r-cran-munsell (0.4.2-1) ...
+Paramétrage de r-cran-labeling (0.3-1) ...
+Paramétrage de r-cran-scales (0.2.5-1) ...
+Paramétrage de r-cran-ggplot2 (1.0.1-1) ...
+Paramétrage de r-cran-gridextra (2.0.0-1) ...
+Paramétrage de r-cran-survival (2.38-3-1) ...
+Paramétrage de r-cran-rpart (4.1-10-1) ...
+Paramétrage de r-cran-latticeextra (0.6-26-1) ...
+Paramétrage de r-cran-hmisc (3.16-0-1) ...
+Paramétrage de r-cran-readxl (0.1.0-1) ...
+Paramétrage de r-cran-zoo (1.7-12-1) ...
+Paramétrage de r-cran-sandwich (2.3-3-1) ...
+Traitement des actions différées (« triggers ») pour libc-bin (2.19-20) ...
+Traitement des actions différées (« triggers ») pour systemd (226-3) ...
+Traitement des actions différées (« triggers ») pour ca-certificates (20150426) ...
 Updating certificates in /etc/ssl/certs...
 180 added, 0 removed; done.
 Running hooks in /etc/ca-certificates/update.d...
 done.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-Reading extended state information...
-Initializing package states...
-Writing extended state information...
-Building tag database...
+Lecture des listes de paquets...
+Construction de l'arbre des dépendances...
+Lecture des informations d'état...
+Lecture de l'information d'état étendu...
+Initialisation de l'état des paquets...
+Écriture de l'information d'état étendu...
+Construction de la base de données des étiquettes...
  -> Finished parsing the build-deps
-Reading package lists...
-Building dependency tree...
-Reading state information...
-fakeroot is already the newest version.
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Lecture des listes de paquets…
+Construction de l'arbre des dépendances…
+Lecture des informations d'état…
+fakeroot est déjà la plus récente version disponible.
+0 mis à jour, 0 nouvellement installés, 0 à enlever et 0 non mis à jour.
 I: Copying source file
 I: copying [r-cran-rcmdrmisc_1.0-3-1.dsc]
 I: copying [./r-cran-rcmdrmisc_1.0-3.orig.tar.gz]
 I: copying [./r-cran-rcmdrmisc_1.0-3-1.debian.tar.xz]
 I: Extracting source
 gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Wed Aug  5 08:10:14 2015 GMT+12 using RSA key ID AB99A21A
+gpgv: Signature made jeu 06 aoû 2015 10:10:14 GMT-14 using RSA key ID AB99A21A
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./r-cran-rcmdrmisc_1.0-3-1.dsc
-dpkg-source: info: extracting r-cran-rcmdrmisc in r-cran-rcmdrmisc-1.0-3
-dpkg-source: info: unpacking r-cran-rcmdrmisc_1.0-3.orig.tar.gz
-dpkg-source: info: unpacking r-cran-rcmdrmisc_1.0-3-1.debian.tar.xz
+dpkg-source: avertissement: impossible de vérifier la signature sur ./r-cran-rcmdrmisc_1.0-3-1.dsc
+dpkg-source: info: extraction de r-cran-rcmdrmisc dans r-cran-rcmdrmisc-1.0-3
+dpkg-source: info: extraction de r-cran-rcmdrmisc_1.0-3.orig.tar.gz
+dpkg-source: info: extraction de r-cran-rcmdrmisc_1.0-3-1.debian.tar.xz
 I: Building the package
-I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc  -b -rfakeroot
-dpkg-buildpackage: source package r-cran-rcmdrmisc
-dpkg-buildpackage: source version 1.0-3-1
-dpkg-buildpackage: source distribution unstable
-dpkg-buildpackage: source changed by Dirk Eddelbuettel <edd at debian.org>
+W: no hooks of type A found -- ignoring
+I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" dpkg-buildpackage -us -uc  -b -rfakeroot
+dpkg-buildpackage: paquet source r-cran-rcmdrmisc
+dpkg-buildpackage: version source 1.0-3-1
+dpkg-buildpackage: distribution source unstable
+dpkg-buildpackage: source changé par Dirk Eddelbuettel <edd at debian.org>
  dpkg-source --before-build r-cran-rcmdrmisc-1.0-3
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: architecture hôte amd64
  fakeroot debian/rules clean
 test -x debian/rules
 dh_clean 
@@ -873,16 +883,16 @@
 				"--built-timestamp=\"Wed, 05 Aug 2015 14:41:52 -0500\""   	        \
 				;                               \
 	fi
-* installing *source* package 'RcmdrMisc' ...
-** package 'RcmdrMisc' successfully unpacked and MD5 sums checked
+* installing *source* package ‘RcmdrMisc’ ...
+** package ‘RcmdrMisc’ correctement décompressé et sommes MD5 vérifiées
 ** R
 ** byte-compile and prepare package for lazy loading
-Note: the specification for S3 class "family" in package 'MatrixModels' seems equivalent to one from package 'lme4': not turning on duplicate class definitions for this class.
+Note: the specification for S3 class “family” in package ‘MatrixModels’ seems equivalent to one from package ‘lme4’: not turning on duplicate class definitions for this class.
 ** help
 *** installing help indices
 ** building package indices
 ** testing if installed package can be loaded
-Note: the specification for S3 class "family" in package 'MatrixModels' seems equivalent to one from package 'lme4': not turning on duplicate class definitions for this class.
+Note: the specification for S3 class “family” in package ‘MatrixModels’ seems equivalent to one from package ‘lme4’: not turning on duplicate class definitions for this class.
 * DONE (RcmdrMisc)
 rm -vf /tmp/buildd/r-cran-rcmdrmisc-1.0-3/debian/r-cran-rcmdrmisc/usr/lib/R/site-library/R.css 			\
 		/tmp/buildd/r-cran-rcmdrmisc-1.0-3/debian/r-cran-rcmdrmisc/usr/lib/R/site-library/RcmdrMisc/COPYING 	\
@@ -924,23 +934,36 @@
 dh_perl -pr-cran-rcmdrmisc 
 dh_shlibdeps -pr-cran-rcmdrmisc    
 dh_gencontrol -pr-cran-rcmdrmisc  
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
 dh_md5sums -pr-cran-rcmdrmisc 
 dh_builddeb -pr-cran-rcmdrmisc 
-dpkg-deb: building package 'r-cran-rcmdrmisc' in '../r-cran-rcmdrmisc_1.0-3-1_all.deb'.
+dpkg-deb : construction du paquet « r-cran-rcmdrmisc » dans « ../r-cran-rcmdrmisc_1.0-3-1_all.deb ».
  dpkg-genbuildinfo  >../r-cran-rcmdrmisc_1.0-3-1_amd64.buildinfo
  dpkg-distaddfile r-cran-rcmdrmisc_1.0-3-1_amd64.buildinfo gnu-r optional
-dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-distaddfile: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
  dpkg-genchanges -b >../r-cran-rcmdrmisc_1.0-3-1_amd64.changes
-dpkg-genchanges: binary-only upload (no source code included)
+dpkg-genchanges: envoi des binaires seulement (le code source n'est pas inclus)
  dpkg-source --after-build r-cran-rcmdrmisc-1.0-3
-dpkg-buildpackage: binary-only upload (no source included)
+dpkg-buildpackage: envoi d'un binaire seulement (aucune inclusion de code source)
+W: no hooks of type B found -- ignoring
+perl: warning: Setting locale failed.
+perl: warning: Please check that your locale settings:
+	LANGUAGE = (unset),
+	LC_ALL = "fr_CH.UTF-8",
+	LANG = "fr_CH.UTF-8"
+    are supported and installed on your system.
+perl: warning: Falling back to the standard locale ("C").
 I: unmounting /sys filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
 I: unmounting /dev/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
 I: unmounting dev/pts filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
 I: unmounting run/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
 I: unmounting proc filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
 I: cleaning the build env 
-I: removing directory /var/cache/pbuilder/build//46999 and its subdirectories
-I: Current time: Sun Sep 20 04:53:35 GMT+12 2015
-I: pbuilder-time-stamp: 1442768015
+I: removing directory /var/cache/pbuilder/build//1343 and its subdirectories
+I: Current time: Mon Sep 21 06:55:32 GMT-14 2015
+I: pbuilder-time-stamp: 1442768132

Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.diff:	 86.5% -- replaced with /var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.diff.gz
b2/build.log:	 83.1%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log:	 82.1%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/logs/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/tmp.FDfcMxBqd7/tmp.KRR9q2aIh3
+ mv /srv/reproducible-results/tmp.FDfcMxBqd7/tmp.KRR9q2aIh3 /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/tmp.FDfcMxBqd7
+ local TMPLOG=/srv/reproducible-results/tmp.FDfcMxBqd7/tmp.ysVPYo7YRO
+ echo
+ tee -a /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log

+ local TIMEOUT=30m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/tmp.FDfcMxBqd7 -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/tmp.FDfcMxBqd7/dbd-tmp-SDo3Fsl
++ schroot --directory /srv/reproducible-results/tmp.FDfcMxBqd7 -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 34'
++ echo diffoscope 34
++ grep '^E: 15binfmt: update-binfmts: unable to open'
+ LOG_RESULT=
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log
/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log:	 80.3% -- replaced with /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1.rbuild.log.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html r-cran-rcmdrmisc
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''r-cran-rcmdrmisc'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-20 16:55:16.262572
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/buildinfo/unstable/amd64/r-cran-rcmdrmisc_1.0-3-1_amd64.buildinfo
INFO: Finished at 2015-09-20 16:55:16.269977, took: 0:00:00.007417
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.FDfcMxBqd7
+ false
+ rm -f /tmp/reproducible-lockfile-unstable-amd64-r-cran-rcmdrmisc
Sun 20 Sep 16:55:16 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-5PZLsM3J, which will now be removed.
Build step 'Execute shell' marked build as failure

