[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_amd64_12 #1987
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Sep 20 16:56:25 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_amd64_12/1987/>
------------------------------------------
[...truncated 7519 lines...]
+Traitement des actions différées (« triggers ») pour systemd (226-3) ...
+Traitement des actions différées (« triggers ») pour tex-common (6.03) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-Reading extended state information...
-Initializing package states...
-Writing extended state information...
-Building tag database...
+Lecture des listes de paquets...
+Construction de l'arbre des dépendances...
+Lecture des informations d'état...
+Lecture de l'information d'état étendu...
+Initialisation de l'état des paquets...
+Écriture de l'information d'état étendu...
+Construction de la base de données des étiquettes...
-> Finished parsing the build-deps
-Reading package lists...
-Building dependency tree...
-Reading state information...
-fakeroot is already the newest version.
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
+Lecture des listes de paquets…
+Construction de l'arbre des dépendances…
+Lecture des informations d'état…
+fakeroot est déjà la plus récente version disponible.
+0 mis à jour, 0 nouvellement installés, 0 à enlever et 1 non mis à jour.
I: Copying source file
I: copying [librostlab-blast_1.0.1-5.dsc]
I: copying [./librostlab-blast_1.0.1.orig.tar.gz]
I: copying [./librostlab-blast_1.0.1-5.debian.tar.xz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat Aug 15 02:13:03 2015 GMT+12 using RSA key ID D1C646D1
+gpgv: Signature made dim 16 aoû 2015 04:13:03 GMT-14 using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-5.dsc
-dpkg-source: info: extracting librostlab-blast in librostlab-blast-1.0.1
-dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz
-dpkg-source: info: unpacking librostlab-blast_1.0.1-5.debian.tar.xz
-dpkg-source: info: applying reproducible.patch
+dpkg-source: avertissement: impossible de vérifier la signature sur ./librostlab-blast_1.0.1-5.dsc
+dpkg-source: info: extraction de librostlab-blast dans librostlab-blast-1.0.1
+dpkg-source: info: extraction de librostlab-blast_1.0.1.orig.tar.gz
+dpkg-source: info: extraction de librostlab-blast_1.0.1-5.debian.tar.xz
+dpkg-source: info: mise en place de reproducible.patch
I: Building the package
-I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" dpkg-buildpackage -us -uc -b -rfakeroot
-dpkg-buildpackage: source package librostlab-blast
-dpkg-buildpackage: source version 1.0.1-5
-dpkg-buildpackage: source distribution unstable
-dpkg-buildpackage: source changed by Andreas Tille <tille at debian.org>
+W: no hooks of type A found -- ignoring
+I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" dpkg-buildpackage -us -uc -b -rfakeroot
+dpkg-buildpackage: paquet source librostlab-blast
+dpkg-buildpackage: version source 1.0.1-5
+dpkg-buildpackage: distribution source unstable
+dpkg-buildpackage: source changé par Andreas Tille <tille at debian.org>
dpkg-source --before-build librostlab-blast-1.0.1
-dpkg-buildpackage: host architecture amd64
+dpkg-buildpackage: architecture hôte amd64
fakeroot debian/rules clean
dh clean --parallel --with autoreconf
dh_testdir -O--parallel
@@ -1025,7 +1035,7 @@
debian/rules override_dh_auto_build
make[1]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1'
dh_auto_build --parallel
- make -j15
+ make -j14
make[2]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1'
make all-recursive
make[3]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1'
@@ -1034,10 +1044,10 @@
mkdir -p rostlab
/bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex
/bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y
-/tmp/buildd/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated]
+/tmp/buildd/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.9-17: avertissement: directive invalide, utilisez «%define api.namespace rostlab::blast» [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
-/tmp/buildd/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
+/tmp/buildd/librostlab-blast-1.0.1/lib/blast-parser-parser.ypp:22.9-17: avertissement: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated]
%define namespace "rostlab::blast"
^^^^^^^^^
updating rostlab/blast-parser-location.h
@@ -1054,8 +1064,8 @@
\
\
/bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe
-libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o
+libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o
/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1
@@ -1289,7 +1299,7 @@
Generating Sqlite3 output for file blast-result.h
Generating Sqlite3 output for dir /tmp/buildd/librostlab-blast-1.0.1/lib/rostlab/
Running dot...
-Generating dot graphs using 16 parallel threads...
+Generating dot graphs using 15 parallel threads...
Running dot for graph 1/58
Running dot for graph 2/58
Running dot for graph 3/58
@@ -2644,7 +2654,7 @@
make[2]: Leaving directory '/tmp/buildd/librostlab-blast-1.0.1/lib'
make[1]: Leaving directory '/tmp/buildd/librostlab-blast-1.0.1'
dh_auto_test -O--parallel
- make -j15 check
+ make -j14 check
make[1]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1'
Making check in lib
make[2]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1/lib'
@@ -2661,7 +2671,7 @@
dh_testroot -O--parallel
dh_prep -O--parallel
dh_auto_install -O--parallel
- make -j15 install DESTDIR=/tmp/buildd/librostlab-blast-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no
+ make -j14 install DESTDIR=/tmp/buildd/librostlab-blast-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1'
Making install in lib
make[2]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1/lib'
@@ -2670,8 +2680,8 @@
make[4]: Entering directory '/tmp/buildd/librostlab-blast-1.0.1/lib'
/bin/mkdir -p '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
- /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/mkdir -p '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
+ /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu'
/usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
/usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/include/rostlab'
libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /tmp/buildd/librostlab-blast-1.0.1/debian/tmp/usr/lib/x86_64-linux-gnu/librostlab-blast.so.0.0.0
@@ -2742,30 +2752,43 @@
dh_shlibdeps -O--parallel
dh_installdeb -O--parallel
dh_gencontrol -O--parallel
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: Depends field of package librostlab-blast-doc: unknown substitution variable ${shlibs:Depends}
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
+dpkg-gencontrol: avertissement: champ Depends du paquet librostlab-blast-doc : variable de substitution inconnue ${shlibs:Depends}
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
+dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
dh_md5sums -O--parallel
dh_builddeb -O--parallel
-dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-5_amd64.deb'.
-dpkg-deb: building package 'librostlab-blast0v5-dbg' in '../librostlab-blast0v5-dbg_1.0.1-5_amd64.deb'.
-dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-5_amd64.deb'.
-dpkg-deb: building package 'librostlab-blast-doc' in '../librostlab-blast-doc_1.0.1-5_all.deb'.
+dpkg-deb : construction du paquet « librostlab-blast0v5-dbg » dans « ../librostlab-blast0v5-dbg_1.0.1-5_amd64.deb ».
+dpkg-deb : construction du paquet « librostlab-blast0v5 » dans « ../librostlab-blast0v5_1.0.1-5_amd64.deb ».
+dpkg-deb : construction du paquet « librostlab-blast0-dev » dans « ../librostlab-blast0-dev_1.0.1-5_amd64.deb ».
+dpkg-deb : construction du paquet « librostlab-blast-doc » dans « ../librostlab-blast-doc_1.0.1-5_all.deb ».
dpkg-genbuildinfo >../librostlab-blast_1.0.1-5_amd64.buildinfo
dpkg-distaddfile librostlab-blast_1.0.1-5_amd64.buildinfo science optional
-dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
+dpkg-distaddfile: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
dpkg-genchanges -b >../librostlab-blast_1.0.1-5_amd64.changes
-dpkg-genchanges: binary-only upload (no source code included)
+dpkg-genchanges: envoi des binaires seulement (le code source n'est pas inclus)
dpkg-source --after-build librostlab-blast-1.0.1
-dpkg-buildpackage: binary-only upload (no source included)
+dpkg-buildpackage: envoi d'un binaire seulement (aucune inclusion de code source)
+W: no hooks of type B found -- ignoring
+perl: warning: Setting locale failed.
+perl: warning: Please check that your locale settings:
+ LANGUAGE = (unset),
+ LC_ALL = "fr_CH.UTF-8",
+ LANG = "fr_CH.UTF-8"
+ are supported and installed on your system.
+perl: warning: Falling back to the standard locale ("C").
I: unmounting /sys filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting /dev/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting dev/pts filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting run/shm filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: unmounting proc filesystem
+/usr/lib/pbuilder/pbuilder-modules: line 163: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: cleaning the build env
-I: removing directory /var/cache/pbuilder/build//39790 and its subdirectories
-I: Current time: Sun Sep 20 04:53:54 GMT+12 2015
-I: pbuilder-time-stamp: 1442768034
+I: removing directory /var/cache/pbuilder/build//13215 and its subdirectories
+I: Current time: Mon Sep 21 06:56:42 GMT-14 2015
+I: pbuilder-time-stamp: 1442768202
Compressing the 2nd log...
/var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/librostlab-blast_1.0.1-5.diff: 86.4% -- replaced with /var/lib/jenkins/userContent/reproducible/logdiffs/unstable/amd64/librostlab-blast_1.0.1-5.diff.gz
b2/build.log: 86.2%
+ echo 'Compressing the 1st log...'
Compressing the 1st log...
+ gzip -9cvn b1/build.log
b1/build.log: 86.0%
+ chmod 644 /var/lib/jenkins/userContent/reproducible/logs/unstable/amd64/librostlab-blast_1.0.1-5.build1.log.gz
+ update_rbuildlog
+ chmod 644 /srv/reproducible-results/tmp.GBf1NVrwNn/tmp.WTPjwslzhH
+ mv /srv/reproducible-results/tmp.GBf1NVrwNn/tmp.WTPjwslzhH /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log
+ RBUILDLOG=/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log
+ '[' 0 -eq 1 ']'
+ '[' 0 -eq 0 ']'
+ call_diffoscope_on_changes_files
++ mktemp --tmpdir=/srv/reproducible-results/tmp.GBf1NVrwNn
+ local TMPLOG=/srv/reproducible-results/tmp.GBf1NVrwNn/tmp.6YM6vDuFao
+ echo
+ tee -a /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log
+ local TIMEOUT=30m
+ DBDSUITE=unstable
+ '[' unstable = experimental ']'
+ set -x
++ mktemp --tmpdir=/srv/reproducible-results/tmp.GBf1NVrwNn -d dbd-tmp-XXXXXXX
+ local TEMP=/srv/reproducible-results/tmp.GBf1NVrwNn/dbd-tmp-iE0Ar43
++ schroot --directory /srv/reproducible-results/tmp.GBf1NVrwNn -c source:jenkins-reproducible-unstable-diffoscope diffoscope -- --version
+ DIFFOSCOPE='diffoscope 34'
++ echo diffoscope 34
++ grep '^E: 15binfmt: update-binfmts: unable to open'
+ LOG_RESULT=
+ cleanup_all
+ '[' 0 -eq 1 ']'
+ '[' '' = failure ']'
+ '[' '!' -z '' ']'
+ gzip -9fvn /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log
/var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log: 84.8% -- replaced with /var/lib/jenkins/userContent/reproducible/rbuild/unstable/amd64/librostlab-blast_1.0.1-5.rbuild.log.gz
+ '[' ng = legacy ']'
+ '[' ng = ng ']'
+ gen_package_html librostlab-blast
+ cd /srv/jenkins/bin
+ python3 -c 'import reproducible_html_packages as rep
pkg = rep.Package('\''librostlab-blast'\'', no_notes=True)
rep.gen_packages_html([pkg], no_clean=True)'
INFO: Starting at 2015-09-20 16:56:25.456677
CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/buildinfo/unstable/amd64/librostlab-blast_1.0.1-5_amd64.buildinfo
INFO: Finished at 2015-09-20 16:56:25.461274, took: 0:00:00.004602
+ cd -
+ cd
+ rm -r /srv/reproducible-results/tmp.GBf1NVrwNn
+ false
+ rm -f /tmp/reproducible-lockfile-unstable-amd64-librostlab-blast
Sun 20 Sep 16:56:25 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-LsZ9B88Y, which will now be removed.
Build step 'Execute shell' marked build as failure
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