[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_5 #4294
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Dec 20 01:01:19 UTC 2015
See <https://jenkins.debian.net/job/reproducible_builder_armhf_5/4294/>
------------------------------------------
[...truncated 1747 lines...]
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.3-1), r-api-3" >> debian/r-cran-maptools.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Mon, 23 Jun 2014 14:22:43 +0200\"" \
; \
else \
R CMD INSTALL -l /build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Mon, 23 Jun 2014 14:22:43 +0200\"" \
; \
fi
* installing *source* package ‘maptools’ ...
files ‘data/wrld_simpl.rda’, ‘inst/shapes/baltim.dbf’, ‘inst/shapes/baltim.shp’, ‘inst/shapes/baltim.shx’, ‘inst/shapes/columbus.dbf’, ‘inst/shapes/columbus.shp’, ‘inst/shapes/columbus.shx’, ‘inst/shapes/pointZ.dbf’, ‘inst/shapes/pointZ.prj’, ‘inst/shapes/pointZ.shp’, ‘inst/shapes/pointZ.shx’, ‘inst/shapes/sids.dbf’, ‘inst/shapes/sids.shp’, ‘inst/shapes/sids.shx’ are missing
** libs
make[1]: Entering directory '/build/r-cran-maptools-0.8-30/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rcentroid.c -o Rcentroid.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rgshhs.c -o Rgshhs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rshapeget.c -o Rshapeget.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rshapeinfo.c -o Rshapeinfo.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rshapewrite.c -o Rshapewrite.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rshapewrite1.c -o Rshapewrite1.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c insiders.c -o insiders.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pip.c -o pip.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c shpopen.c -o shpopen.o
shpopen.c: In function ‘SHPOpen’:
shpopen.c:507:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( pabyBuf, 100, 1, psSHP->fpSHP );
^
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c shptree.c -o shptree.o
shptree.c: In function ‘SHPSearchDiskTree’:
shptree.c:829:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( abyBuf, 16, 1, fp );
^
shptree.c: In function ‘SHPSearchDiskTreeNode’:
shptree.c:731:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( &offset, 4, 1, fp );
^
shptree.c:734:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( adfNodeBoundsMin, sizeof(double), 2, fp );
^
shptree.c:735:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( adfNodeBoundsMax, sizeof(double), 2, fp );
^
shptree.c:744:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( &numshapes, 4, 1, fp );
^
shptree.c:771:9: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( *ppanResultBuffer + *pnResultCount,
^
shptree.c:786:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
fread( &numsubnodes, 4, 1, fp );
^
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o maptools.so Rcentroid.o Rgshhs.o Rshapeget.o Rshapeinfo.o Rshapewrite.o Rshapewrite1.o insiders.o pip.o shpopen.o shptree.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/build/r-cran-maptools-0.8-30/src'
make[1]: Entering directory '/build/r-cran-maptools-0.8-30/src'
make[1]: Leaving directory '/build/r-cran-maptools-0.8-30/src'
installing to /build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library/maptools/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maptools)
rm -vf /build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library/R.css \
/build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library/maptools/COPYING \
/build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/lib/R/site-library/maptools/LICENSE.txt
if test -f debian/overrides; then \
install -d /build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/build/r-cran-maptools-0.8-30/debian/r-cran-maptools/usr/share/lintian/overrides/r-cran-maptools; \
fi
Adding cdbs dependencies to debian/r-cran-maptools.substvars
dh_installdirs -pr-cran-maptools
# remove extra license file, the content is just in debian/copyright
rm -f debian/r-cran-maptools/usr/lib/R/site-library/maptools/LICENSE
dh_installdocs -pr-cran-maptools
dh_installexamples -pr-cran-maptools
dh_installman -pr-cran-maptools
dh_installinfo -pr-cran-maptools
dh_installmenu -pr-cran-maptools
dh_installcron -pr-cran-maptools
dh_installinit -pr-cran-maptools
dh_installdebconf -pr-cran-maptools
dh_installemacsen -pr-cran-maptools
dh_installcatalogs -pr-cran-maptools
dh_installpam -pr-cran-maptools
dh_installlogrotate -pr-cran-maptools
dh_installlogcheck -pr-cran-maptools
dh_installchangelogs -pr-cran-maptools ./ChangeLog
dh_installudev -pr-cran-maptools
dh_lintian -pr-cran-maptools
dh_bugfiles -pr-cran-maptools
dh_install -pr-cran-maptools
dh_link -pr-cran-maptools
dh_installmime -pr-cran-maptools
dh_installgsettings -pr-cran-maptools
dh_strip -pr-cran-maptools
dh_compress -pr-cran-maptools
dh_fixperms -pr-cran-maptools
dh_makeshlibs -pr-cran-maptools
dh_installdeb -pr-cran-maptools
dh_perl -pr-cran-maptools
dh_shlibdeps -pr-cran-maptools
dh_gencontrol -pr-cran-maptools
dpkg-gencontrol: avertissement: Fichier::FcntlLock non disponible; utilisation de « flock » qui n'est pas sécurisé pour NFS
dh_md5sums -pr-cran-maptools
dh_builddeb -pr-cran-maptools
dpkg-deb : construction du paquet « r-cran-maptools » dans « ../r-cran-maptools_0.8-30-1_armhf.deb ».
dpkg-genchanges -b >../r-cran-maptools_0.8-30-1_armhf.changes
dpkg-genchanges: envoi des binaires seulement (le code source n'est pas inclus)
dpkg-source --after-build r-cran-maptools-0.8-30
dpkg-buildpackage: envoi d'un binaire seulement (aucune inclusion de code source)
I: user script /srv/workspace/pbuilder/30331/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/30331/tmp/hooks/B01_cleanup finished
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
I: unmounting /sys filesystem
/usr/lib/pbuilder/pbuilder-modules: line 164: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
I: unmounting /dev/shm filesystem
/usr/lib/pbuilder/pbuilder-modules: line 164: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
I: unmounting dev/pts filesystem
/usr/lib/pbuilder/pbuilder-modules: line 164: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
I: unmounting run/shm filesystem
/usr/lib/pbuilder/pbuilder-modules: line 164: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LANGUAGE = (unset),
LC_ALL = "fr_CH.UTF-8",
LANG = "fr_CH.UTF-8"
are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
I: unmounting proc filesystem
/usr/lib/pbuilder/pbuilder-modules: line 164: warning: setlocale: LC_ALL: cannot change locale (fr_CH.UTF-8)
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/30331 and its subdirectories
I: Current time: Sun Dec 20 15:01:09 GMT-14 2015
I: pbuilder-time-stamp: 1450573269
+ PRESULT=0
+ set -e
+ '[' 0 -eq 124 ']'
+ false
+ set +x
Sun Dec 20 01:01:09 UTC 2015 - build #2 for r-cran-maptools/unstable/armhf on bpi0 done.
/srv/reproducible-results/rbuild-debian-5keFbJe6/tmp.kmTF5LmeVU: 49.0% -- replaced with /srv/reproducible-results/rbuild-debian-5keFbJe6/tmp.kmTF5LmeVU.gz
Sun Dec 20 01:01:09 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-pONef2QL, which will now be removed.
/srv/reproducible-results/rbuild-debian-Af0TR0FC:
total 60
drwxr-xr-x 2 jenkins jenkins 4096 Dec 20 00:47 b1
drwxr-xr-x 2 jenkins jenkins 4096 Dec 20 01:01 b2
-rw-r--r-- 1 jenkins jenkins 2086 Jun 24 2014 r-cran-maptools_0.8-30-1.dsc
-rw------- 1 jenkins jenkins 48128 Dec 20 00:47 tmp.zcklwQuhPF
/srv/reproducible-results/rbuild-debian-Af0TR0FC/b1:
total 2284
-rw-r--r-- 1 jenkins jenkins 45299 Dec 20 00:47 build.log
-rw-r--r-- 1 jenkins jenkins 52980 Dec 20 00:47 r-cran-maptools-dbgsym_0.8-30-1_armhf.deb
-rw-r--r-- 1 jenkins jenkins 6468 Dec 20 00:47 r-cran-maptools_0.8-30-1.debian.tar.xz
-rw-r--r-- 1 jenkins jenkins 2086 Dec 20 00:47 r-cran-maptools_0.8-30-1.dsc
-rw-r--r-- 1 jenkins jenkins 7237 Dec 20 00:47 r-cran-maptools_0.8-30-1_armhf.buildinfo
-rw-r--r-- 1 jenkins jenkins 1639 Dec 20 00:47 r-cran-maptools_0.8-30-1_armhf.changes
-rw-r--r-- 1 jenkins jenkins 1218728 Dec 20 00:47 r-cran-maptools_0.8-30-1_armhf.deb
-rw-r--r-- 1 jenkins jenkins 976188 Dec 20 00:47 r-cran-maptools_0.8-30.orig.tar.xz
/srv/reproducible-results/rbuild-debian-Af0TR0FC/b2:
total 2236
-rw-r--r-- 1 jenkins jenkins 61175 Dec 20 01:01 build.log
-rw-r--r-- 1 jenkins jenkins 6468 Dec 20 01:01 r-cran-maptools_0.8-30-1.debian.tar.xz
-rw-r--r-- 1 jenkins jenkins 2086 Dec 20 01:01 r-cran-maptools_0.8-30-1.dsc
-rw-r--r-- 1 jenkins jenkins 1046 Dec 20 01:01 r-cran-maptools_0.8-30-1_armhf.changes
-rw-r--r-- 1 jenkins jenkins 1219494 Dec 20 01:01 r-cran-maptools_0.8-30-1_armhf.deb
-rw-r--r-- 1 jenkins jenkins 976188 Dec 20 01:01 r-cran-maptools_0.8-30.orig.tar.xz
Format: 1.8
Date: Mon, 23 Jun 2014 14:22:43 +0200
Source: r-cran-maptools
Binary: r-cran-maptools
Architecture: armhf
Version: 1:0.8-30-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
r-cran-maptools - GNU R Tools for reading and handling spatial objects
Changes:
r-cran-maptools (1:0.8-30-1) unstable; urgency=medium
.
* New upstream version
* debian/copyright: exclude files with unclear license
* Upload to Debian main since no non-free parts are remaining
* debian/README.source: document binary data files
* debian/README.Debian: Hint about removed data files
Checksums-Sha1:
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7584743cc642a7d4b2b77dac2e723655403a6498 7237 r-cran-maptools_0.8-30-1_armhf.buildinfo
12d43f642d92c283f535c3b06826a991bc68e745 1218728 r-cran-maptools_0.8-30-1_armhf.deb
Checksums-Sha256:
877f2244a60017de2add3de6ecb9d9574d6038323dbf8b7969c9c7f04011e712 52980 r-cran-maptools-dbgsym_0.8-30-1_armhf.deb
54efe3b9c12554067777ecbefd74ef6aa530193f5b2af8fa0b7078395005f4f2 7237 r-cran-maptools_0.8-30-1_armhf.buildinfo
ed9a35587554dc9e0592419fe1ac474d5a5c349ffbb7ffcffa5a95cd0f73d720 1218728 r-cran-maptools_0.8-30-1_armhf.deb
Files:
102b7c10ba2c0db3c9e19f7e423ec429 52980 debug extra r-cran-maptools-dbgsym_0.8-30-1_armhf.deb
b603edcddcb352445923e009b51fca48 7237 gnu-r optional r-cran-maptools_0.8-30-1_armhf.buildinfo
4933d38d511a4431e6ed4dbd2778ceb5 1218728 gnu-r optional r-cran-maptools_0.8-30-1_armhf.deb
grep-dctrl: ./b2/r-cran-maptools_0.8-30-1_armhf.buildinfo: No such file or directory
/srv/reproducible-results/rbuild-debian-Af0TR0FC/tmp.zcklwQuhPF: 78.6% -- replaced with /srv/reproducible-results/rbuild-debian-Af0TR0FC/tmp.zcklwQuhPF.gz
INFO: Starting at 2015-12-20 01:01:18.840300
INFO: Finished at 2015-12-20 01:01:18.854670, took: 0:00:00.014382
Sun 20 Dec 01:01:18 UTC 2015 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-FAejZLWJ, which will now be removed.
Build step 'Execute shell' marked build as failure
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