[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_6 #5275
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sat Jan 9 00:49:12 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_6/5275/>
------------------------------------------
[...truncated 50666 lines...]
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmerger.hpp:37,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:36:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test'
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixMatch>&, const ncbi::CRef<ncbi::objects::CAlnMixMatch>&)’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
match1->m_ChainScore == match2->m_ChainScore &&
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
(aln_seq1->m_StrandScore > 0 &&
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
aln_seq2->m_StrandScore > 0 &&
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
aln_seq2->m_StrandScore < 0 &&
^
/usr/bin/make -f /build/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all
make[5]: Entering directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o
/bin/rm -f libid2_split.so .libid2_split.so.stamp
/usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-2.2.31/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/blast/services/blast_services.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
In file included from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmerger.hpp:42:0,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:36:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
/bin/bash /build/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-2.2.31/c++/BUILD/lib
/bin/ln -f libid2_split.so /build/ncbi-blast+-2.2.31/c++/BUILD/lib/libid2_split.so
/bin/ln -f .id2_split.dep /build/ncbi-blast+-2.2.31/c++/BUILD/status/.id2_split.dep
make[5]: Leaving directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split'
make[4]: Leaving directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (start_its_i->second->first != -1) {
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA ||
^
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/serial/serialbase.hpp:35,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Seq_align_.hpp:43,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Seq_align.hpp:42,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmix.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmix.cpp:36:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/serial/serialbase.hpp:35,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmap.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnpos_ci.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnpos_ci.cpp:36:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
int width1, width2;
^
In file included from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmerger.hpp:42:0,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmix.cpp:38:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:37,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp:35:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/serial/serialbase.hpp:35,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmap.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp:35:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blast_services_unit_test
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o
strip blast_services_unit_test
/bin/bash /build/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.2.31/c++/BUILD/bin
/bin/ln -f blast_services_unit_test /build/ncbi-blast+-2.2.31/c++/BUILD/bin/blast_services_unit_test
make[5]: Leaving directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test'
make[4]: Leaving directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test'
cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null
make[4]: Entering directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/make -f /build/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all
make[5]: Entering directory '/build/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/serial/serialbase.hpp:35,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg_.hpp:43,
from /build/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Dense_seg.hpp:42,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmap.hpp:36,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnvec.hpp:37,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvec.cpp:35:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
In file included from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp:35:0:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
In file included from /build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp:37:0:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’:
/build/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
seq1->m_SeqIdx == seq2->m_SeqIdx &&
^
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef<ncbi::objects::CAlnMixSeq>&, const ncbi::CRef<ncbi::objects::CAlnMixSeq>&)’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
seq1->m_ChainScore == seq2->m_ChainScore &&
^
In file included from /build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0,
from /build/ncbi-blast+-2.2.31/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp:38,
from /build/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp:40:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static TNumeric ncbi::NStr::StringToNumeric(const ncbi::CTempString&, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4082:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp: In static member function ‘static bool ncbi::NStr::StringToNumeric(const ncbi::CTempString&, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]’:
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/build/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:4103:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
^
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’:
/build/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
if (plus && prev_start_plus_len < start ||
^
Terminated
/srv/reproducible-results/rbuild-debian-Os2RBlyR/tmp.Y7DAN3CyXo: FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:537)
at hudson.model.Run.execute(Run.java:1741)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:408)
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