[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_43 #1

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cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/math/invsqrt.c.o   -c /build/gromacs-5.1.2/src/gromacs/math/invsqrt.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /build/gromacs-5.1.2/src/gromacs/mdrunutility/handlerestart.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/random/random.cpp.o -c /build/gromacs-5.1.2/src/gromacs/random/random.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /build/gromacs-5.1.2/src/gromacs/onlinehelp/helpwritercontext.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /build/gromacs-5.1.2/src/gromacs/onlinehelp/helpmanager.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /build/gromacs-5.1.2/src/gromacs/onlinehelp/rstparser.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /build/gromacs-5.1.2/src/gromacs/onlinehelp/helpformat.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /build/gromacs-5.1.2/src/gromacs/onlinehelp/helptopic.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/timeunitmanager.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/options.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/abstractoption.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/basicoptions.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/filenameoptionmanager.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/optionsvisitor.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/optionsassigner.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /build/gromacs-5.1.2/src/gromacs/options/filenameoption.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /build/gromacs-5.1.2/src/gromacs/pbcutil/mshift.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /build/gromacs-5.1.2/src/gromacs/pbcutil/pbc-simd.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.c.o   -c /build/gromacs-5.1.2/src/gromacs/pbcutil/rmpbc.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.c.o   -c /build/gromacs-5.1.2/src/gromacs/pbcutil/pbc.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.c.o   -c /build/gromacs-5.1.2/src/gromacs/timing/wallcycle.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.c.o   -c /build/gromacs-5.1.2/src/gromacs/timing/cyclecounter.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.c.o   -c /build/gromacs-5.1.2/src/gromacs/timing/walltime_accounting.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/atomsbuilder.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/residuetypes.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/atomprop.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/topology.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/index.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/symtab.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/block.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /build/gromacs-5.1.2/src/gromacs/topology/atoms.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.c.o   -c /build/gromacs-5.1.2/src/gromacs/topology/invblock.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.c.o   -c /build/gromacs-5.1.2/src/gromacs/topology/mtop_util.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.c.o   -c /build/gromacs-5.1.2/src/gromacs/topology/topsort.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.c.o   -c /build/gromacs-5.1.2/src/gromacs/utility/cstringutil.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.c.o   -c /build/gromacs-5.1.2/src/gromacs/utility/smalloc.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.c.o   -c /build/gromacs-5.1.2/src/gromacs/utility/qsort_threadsafe.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/messagestringcollector.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/programcontext.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/baseversion.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/path.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/futil.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/stringutil.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/basenetwork.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/gmxregex.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/init.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/file.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/file.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/exceptions.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/errorcodes.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/gmxomp.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/gmxassert.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/datafilefinder.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/sysinfo.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/directoryenumerator.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/fatalerror.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/fileredirector.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /build/gromacs-5.1.2/src/gromacs/utility/errorformat.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /build/gromacs-5.1.2/src/gromacs/fileio/xvgr.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio_for_tools.cpp.o -c /build/gromacs-5.1.2/src/gromacs/fileio/tngio_for_tools.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /build/gromacs-5.1.2/src/gromacs/fileio/matio.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /build/gromacs-5.1.2/src/gromacs/fileio/tngio.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmxfio_xdr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/writeps.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/trxio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_system_xdr.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmx_system_xdr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trnio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/trnio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filenm.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/filenm.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mdoutf.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/mdoutf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/pdbio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/mtxio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/timecontrol.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio_asc.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmxfio_asc.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/confio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/md5.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/libxdrf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio_rw.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmxfio_rw.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/vmdio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/tpxio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio_bin.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmxfio_bin.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/xdrd.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/xtcio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trajectory_writing.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/trajectory_writing.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/gmxfio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/enxio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/fileio/strdb.c.o   -c /build/gromacs-5.1.2/src/gromacs/fileio/strdb.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o   -c /build/gromacs-5.1.2/src/external/vmd_molfile/vmddlopen.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /build/gromacs-5.1.2/src/gromacs/swap/swapcoords.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.c.o   -c /build/gromacs-5.1.2/src/gromacs/essentialdynamics/edsam.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /build/gromacs-5.1.2/src/gromacs/pulling/pullutil.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /build/gromacs-5.1.2/src/gromacs/pulling/pull_rotation.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /build/gromacs-5.1.2/src/gromacs/pulling/pull.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.c.o   -c /build/gromacs-5.1.2/src/gromacs/imd/imd.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.c.o   -c /build/gromacs-5.1.2/src/gromacs/imd/imdsocket.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rmsdist.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_h2order.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_enemat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_sans.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_mindist.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_dyecoupl.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/anadih.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_editconf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_make_ndx.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_trjcat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_confrms.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_clustsize.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_mk_angndx.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_dos.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_disre.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_dyndom.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_bar.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_vanhove.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/edittop.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/edittop.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_anaeig.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/geminate.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/geminate.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_hbond.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_order.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_energy.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_make_edi.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_analyze.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_helix.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_msd.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_saxs.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_lie.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/powerspect.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_tune_pme.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_bundle.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/nsfactor.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_eneconv.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_mdmat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_anadock.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/binsearch.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/princ.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rotmat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/fitahx.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rama.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/pp2shift.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_sorient.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_gyrate.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_genion.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_wheel.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_sigeps.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_nmens.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_do_dssp.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/hxprops.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_nmtraj.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/dlist.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_trjorder.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_morph.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_polystat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_tcaf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_saltbr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_hydorder.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_nmeig.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_angle.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_helixorient.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rms.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/nrama.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_spol.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_density.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_principal.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_genpr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/dens_filter.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_spatial.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_velacc.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_cluster.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rmsf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_rotacf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_densmap.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_filter.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_sham.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_current.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_covar.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_traj.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_trjconv.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/cmat.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_potential.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/eigio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/sfactor.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_dielectric.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_xpm2ps.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_chi.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_wham.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_dipoles.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_densorder.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxana/gmx_pme_error.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/vsite_parm.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/calch.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/pgutil.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/grompp.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gen_ad.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/xlate.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/topdirs.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gmxcpp.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gpp_nextnb.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/genconf.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/add_par.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/h_db.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/readir.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/x2top.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gpp_atomtype.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/convparm.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/resall.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/hizzie.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/readrot.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/pdb2gmx.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/tomorse.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readadress.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/readadress.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/sortwater.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/sortwater.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/toputil.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/topshake.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/genhydro.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/toppush.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/gen_vsite.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/topio.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/readpull.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/specbond.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/ter_db.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/hackblock.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.c.o   -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/nm2type.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/pdb2top.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/fflibutil.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/insert-molecules.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/solvate.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /build/gromacs-5.1.2/src/gromacs/gmxpreprocess/read-conformation.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.c.o   -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/manyautocorrelation.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.c.o   -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/polynomials.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.c.o   -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/autocorr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.c.o   -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/integrate.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.c.o   -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/crosscorr.c
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/c++   -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -std=c++0x -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /build/gromacs-5.1.2/src/gromacs/correlationfunctions/expfit.cpp
cd /build/gromacs-5.1.2/build/basic-dp/src/gromacs && /usr/bin/cc  -DGMX_DOUBLE -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/build/gromacs-5.1.2/build/basic-dp/src/external/tng_io/include -I/build/gromacs-5.1.2/src/external/tng_io/include -I/build/gromacs-5.1.2/build/basic-dp/src -I/build/gromacs-5.1.2/src/external/thread_mpi/include -I/build/gromacs-5.1.2/src  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter  -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast  -Wno-array-bounds  -fPIC   -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.c.o   -c /build/gromacs-5.1.2/src/external/lmfit/lmmin.c
Terminated
/srv/reproducible-results/rbuild-debian-GgjGQ8Vp/tmp.2yEmvXq08u:	Sun  6 Mar 13:22:57 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-HSfPbZ9E, which will now be removed.
Sun  6 Mar 13:22:57 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-HSfPbZ9E, which will now be removed.
 96.5% -- replaced with /srv/reproducible-results/rbuild-debian-GgjGQ8Vp/tmp.2yEmvXq08u.gz
INFO: Starting at 2016-03-06 13:22:57.625131
FATAL: null
java.lang.NullPointerException
	at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
	at hudson.model.Build$BuildExecution.doRun(Build.java:173)
	at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
	at hudson.model.Run.execute(Run.java:1738)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:410)
INFO: Finished at 2016-03-06 13:22:59.922025, took: 0:00:02.296907
INFO: Starting at 2016-03-06 13:23:00.086986