[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_41 #1689
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Thu Apr 14 11:59:16 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_41/1689/>
------------------------------------------
[...truncated 6147 lines...]
checking for library containing SZ_BufftoBuffCompress... -lsz
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for library containing H5Fopen... -lhdf5
checking for library containing H5DSis_scale... -lhdf5_hl
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking for library containing nc_open... -lnetcdf
checking nc-config script... checking for nc-config... /usr/bin/nc-config
checking netcdf's OpenDAP support... yes
checking netcdf's nc2 support... yes
checking netcdf's nc4 support... yes
checking for the JASPER library... suppressed
checking for library containing opj_image_create... none required
checking for the LIBPNG library... suppressed
checking grib_api.h usability... yes
checking grib_api.h presence... yes
checking for grib_api.h... yes
checking for library containing grib_get_message... -lgrib_api
checking for GRIB support... yes
checking for CGRIBEX support... no
checking for SERVICE support... yes
checking for EXTRA support... yes
checking for IEG support... yes
checking for building an additional static CDI binary... no
checking for grib_get_length... yes
checking for pkg-config... no
checking for ruby... no
checking if Fortran compiler can handle complex CHARACTER interoperability... yes
checking for flag to alter module search path... -I
checking for suffix of module files... mod
checking C preprocessor flags for Fortran calling convention cfortran.h... gFortran (user-specified)
checking if C externals constructed with cfortran.h work... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tests/test_cksum_grib
config.status: creating tests/test_cksum_nc
config.status: creating tests/test_cksum_nc2
config.status: creating tests/test_cksum_nc4
config.status: creating tests/test_cksum_extra
config.status: creating tests/test_cksum_service
config.status: creating tests/test_cksum_ieg
config.status: creating tests/test_chunk_cksum
config.status: creating tests/test_f2003
config.status: creating tests/pio_write_run
config.status: creating tests/pio_write_deco2d_run
config.status: creating tests/pio_cksum_mpinonb
config.status: creating tests/pio_cksum_mpi_fw_ordered
config.status: creating tests/pio_cksum_mpi_fw_at_all
config.status: creating tests/pio_cksum_mpi_fw_at_reblock
config.status: creating tests/pio_cksum_fpguard
config.status: creating tests/pio_cksum_asynch
config.status: creating tests/pio_cksum_writer
config.status: creating tests/pio_cksum_cdf
config.status: creating tests/test_resource_copy_mpi_run
config.status: creating tests/test_cdf_transformation
config.status: creating tables/gen_tableheaderfile
config.status: creating util/serialrun
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating interfaces/Makefile
config.status: creating app/Makefile
config.status: creating tests/Makefile
config.status: creating examples/Makefile
config.status: creating cdi.settings
config.status: creating examples/pio/Makefile
config.status: creating src/pkgconfig/cdi.pc
config.status: creating src/pkgconfig/cdipio.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: CDI is configured with the following options:
config.status: creating cdi.settings
{
"build" : {
"tools" : {
"CC" : "gcc",
"CPP" : "gcc -E",
"CPPFLAGS" : "-I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include",
"CFLAGS" : "-g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC ",
"LDFLAGS" : "-L/usr/lib -L/usr/lib -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/lib -L/usr/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/usr/lib",
"LIBS" : "-lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm -lpng -lopenjpeg -lm -ljpeg -lz -lcurl",
"FC" : "gfortran",
"F77" : "f77",
"FCFLAGS" : "-g -O2 -fPIE -fstack-protector-strong",
"LD" : "/usr/bin/ld",
"NM" : "/usr/bin/nm -B",
"AR" : "ar",
"AS" : "@AS@",
"DLLTOOL" : "false",
"OBJDUMP" : "objdump",
"STRIP" : "strip",
"RANLIB" : "ranlib",
"INSTALL" : "/usr/bin/install -c"
},
"platform" : {
"USER_NAME" : "debian_build",
"HOST_NAME" : "debian",
"SYSTEM_TYPE" : "armv7l-unknown-linux-gnueabihf"
},
"libraries" : {
"threads" : {
"lib" : "",
"include" : ""
},
"mpi" : {
"libs" : "",
"cflags" : "",
"fclibs" : "",
"fcflags" : ""
},
"zlib" : {
"lib" : " -L/usr/lib -lz",
"include" : " -I/usr/include"
},
"szlib" : {
"lib" : " -lsz",
"include" : ""
},
"hdf5" : {
"lib" : " -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/lib -lhdf5",
"include" : " -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include"
},
"netcdf" : {
"lib" : " -L/usr/lib -lnetcdf",
"include" : " -I/usr/include"
},
"grib_api" : {
"lib" : " -L/usr/lib -lgrib_api",
"include" : " -I/usr/include"
},
"jasper" : {
"lib" : ""
}
}
},
"features" : {
"enable_cdi_lib" : true,
"grib" : "yes",
"cgribex" : "no",
"service" : "yes",
"extra" : "yes",
"ieg" : "yes",
"enable_mpi" : false,
"parallel_nc4" : 0,
"enable_python" : false,
"enable_ruby" : false
}
}
configure:
Configuration completed.
You can now say 'make' to compile the CDI package and 'make install' to install it afterwards.
configure: CDO is configured with the following options:
{
"CC" : "gcc",
"CPP" : "gcc -E",
"CPPFLAGS" : "-I/usr/include/magics -I/usr/include -I/usr/include -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include",
"CFLAGS" : "-g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -fopenmp ",
"LDFLAGS" : "-L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/lib -L/usr/lib -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/usr/lib",
"LIBS" : "-lMagPlus -ludunits2 -lproj -lfftw3 -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm -lpng -lopenjpeg -lm -ljpeg -lz -lcurl",
"FCFLAGS" : "-g -O2 -fPIE -fstack-protector-strong",
"INCLUDES" : "@INCLUDES@",
"LD" : "/usr/bin/ld",
"NM" : "/usr/bin/nm -B",
"AR" : "ar",
"AS" : "as",
"DLLTOOL" : "false",
"OBJDUMP" : "objdump",
"STRIP" : "strip",
"RANLIB" : "ranlib",
"INSTALL" : "/usr/bin/install -c",
"cdi" : {
"enable_cdi_lib" : true
},
"threads" : {
"lib" : "",
"include" : ""
},
"zlib" : {
"lib" : " -L/usr/lib -lz",
},
"szlib" : {
"lib" : " -lsz",
"include" : ""
},
"hdf5" : {
"lib" : " -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/lib -lhdf5",
"include" : " -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include"
},
"netcdf" : {
"lib" : " -L/usr/lib -lnetcdf",
"include" : " -I/usr/include"
},
"udunits2" : {
"lib" : " -L/usr/lib -ludunits2",
"include" : " -I/usr/include"
},
"proj" : {
"lib" : " -L/usr/lib -lproj",
"include" : " -I/usr/include"
},
"USER_NAME" : "debian_build",
"HOST_NAME" : "debian",
"SYSTEM_TYPE" : "armv7l-unknown-linux-gnueabihf"
}
configure:
Configuration completed.
You can now say 'make' to compile the CDO package and 'make install' to install it afterwards.
# LIBS="-Wl,-Bstatic -lpng -ljasper -lm -ljpeg -lz -Wl,-Bdynamic -lcurl"
make[1] : on quitte le répertoire « /build/cdo-1.7.0+dfsg.1 »
dh_auto_build
make -j1
make[1] : on entre dans le répertoire « /build/cdo-1.7.0+dfsg.1 »
Making all in libcdi
make[2] : on entre dans le répertoire « /build/cdo-1.7.0+dfsg.1/libcdi »
Making all in src
make[3] : on entre dans le répertoire « /build/cdo-1.7.0+dfsg.1/libcdi/src »
make all-am
make[4] : on entre dans le répertoire « /build/cdo-1.7.0+dfsg.1/libcdi/src »
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c -o basetime.lo basetime.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c basetime.c -fPIC -DPIC -o .libs/basetime.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT basetime.lo -MD -MP -MF .deps/basetime.Tpo -c basetime.c -fPIC -DPIC -o basetime.o >/dev/null 2>&1
mv -f .deps/basetime.Tpo .deps/basetime.Plo
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT binary.lo -MD -MP -MF .deps/binary.Tpo -c -o binary.lo binary.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT binary.lo -MD -MP -MF .deps/binary.Tpo -c binary.c -fPIC -DPIC -o .libs/binary.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT binary.lo -MD -MP -MF .deps/binary.Tpo -c binary.c -fPIC -DPIC -o binary.o >/dev/null 2>&1
mv -f .deps/binary.Tpo .deps/binary.Plo
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include -I/usr/lib/arm-linux-gnueabihf/hdf5/serial/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DgFortran -I/usr/include -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -MT calendar.lo -MD -MP -MF .deps/calendar.Tpo -c -o calendar.lo calendar.c
/srv/reproducible-results/rbuild-debian-tMdBW8mL/tmp.oncLyTNVrx: 91.3% -- replaced with /srv/reproducible-results/rbuild-debian-tMdBW8mL/tmp.oncLyTNVrx.gz
INFO: Starting at 2016-04-14 11:59:14.016605
INFO: Finished at 2016-04-14 11:59:14.480380, took: 0:00:00.463790
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1738)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
INFO: Starting at 2016-04-14 11:59:14.856646
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