[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_armhf_27 #3922
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sun Apr 24 16:56:28 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_armhf_27/3922/>
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install -D -m644 /build/ruby-bio-1.5.0/lib/bio/io/sql.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/sql.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/io/fetch.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/io/fastacmd.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fastacmd.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/io/hinv.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/io/registry.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/registry.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/emboss.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/emboss.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/targetp/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/targetp/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/clustalw/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/tcoffee.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tcoffee.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/clustalw.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/bl2seq/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/genscan/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/genscan/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/gcg/msf.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/msf.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/gcg/seq.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/seq.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/sosui/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sosui/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/sim4/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/hmmer/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/genomenet.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/genomenet.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/rpsblast.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rpsblast.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/wublast.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/wublast.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/xmlparser.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/xmlparser.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/format0.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format0.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/rexml.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rexml.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/format8.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format8.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/remote.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/remote.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast/ncbioptions.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ncbioptions.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/phylip/distance_matrix.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/distance_matrix.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/phylip/alignment.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/alignment.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/codeml.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/baseml/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/yn00.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/baseml.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/common_report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common_report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/codeml/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/codeml/rates.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/rates.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/common.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/paml/yn00/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/tmhmm/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/psort.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/hmmer.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/fasta.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/fasta/format10.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta/format10.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blast.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/spidey/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/spidey/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/muscle.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/muscle.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/mafft.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/pts1.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/pts1.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/mafft/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/iprscan/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/psort/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/meme/mast/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/meme/mast.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/meme/motif.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/motif.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/sim4.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/probcons.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/probcons.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/appl/blat/report.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blat/report.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/lasergene.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/lasergene.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/chemicalcomponent.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/pdb.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/residue.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/chain.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/atom.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/model.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb/utils.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/aaindex.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/aaindex.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/litdb.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/litdb.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/genpept.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/genbank_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/ddbj.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/genbank.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/format_genbank.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/refseq.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/genbank/common.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/pdb.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fastq/format_fastq.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fastq/fastq_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/sanger_chromatogram/chromatogram.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/sanger_chromatogram/abif.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/abif.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/sanger_chromatogram/scf.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/scf.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/phyloxml/phyloxml.xsd /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml.xsd
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/phyloxml/phyloxml_writer.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_writer.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/phyloxml/phyloxml_parser.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_parser.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/phyloxml/phyloxml_elements.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/nexus.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/newick.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/newick.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/format_embl.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/embl_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/embl.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/trembl.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/swissprot.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/uniprotkb.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprotkb.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/sptr.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/uniprot.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/embl/common.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fastq.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/format_qual.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_qual.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/format_fasta.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_fasta.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/defline.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/defline.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/qual.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/fasta_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/fasta_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fasta/qual_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/nbrf.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/genes.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genes.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/genome.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genome.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/compound.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/compound.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/orthology.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/orthology.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/keggtab.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/keggtab.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/module.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/module.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/reaction.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/reaction.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/enzyme.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/enzyme.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/kgml.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/kgml.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/brite.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/brite.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/glycan.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/glycan.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/drug.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/drug.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/pathway.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/pathway.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/common.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/common.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/kegg/expression.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/expression.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/biosql/biosql_to_biosequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/biosql_to_biosequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/biosql/sequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/sequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/gff.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/gff.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/soft.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/soft.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/transfac.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/transfac.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/go.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/go.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/prosite.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/medline.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/medline.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/rebase.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/rebase.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/db/fantom.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/command.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/command.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/location.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/location.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/feature.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/feature.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/tree.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/tree.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/sequence.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/alignment.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/alignment.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/pathway.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/pathway.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/data/aa.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/aa.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/data/codontable.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio/data/na.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/na.rb
install -D -m644 /build/ruby-bio-1.5.0/lib/bio.rb /build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio.rb
Rewriting shebang line of /build/ruby-bio-1.5.0/debian/ruby-bio/usr/bin/br_pmfetch.rb
Rewriting shebang line of /build/ruby-bio-1.5.0/debian/ruby-bio/usr/bin/bioruby
Rewriting shebang line of /build/ruby-bio-1.5.0/debian/ruby-bio/usr/bin/br_biofetch.rb
Rewriting shebang line of /build/ruby-bio-1.5.0/debian/ruby-bio/usr/bin/br_bioflat.rb
Rewriting shebang line of /build/ruby-bio-1.5.0/debian/ruby-bio/usr/bin/br_biogetseq.rb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install Rubygems integration metadata │
└──────────────────────────────────────────────────────────────────────────────┘
generating gemspec at /build/ruby-bio-1.5.0/debian/ruby-bio/usr/share/rubygems-integration/all/specifications/bio-1.5.0.gemspec
/usr/bin/ruby2.3 /usr/bin/gem2deb-test-runner
┌──────────────────────────────────────────────────────────────────────────────┐
│ Run tests for ruby2.3 from debian/ruby-tests.rb │
└──────────────────────────────────────────────────────────────────────────────┘
RUBYLIB=/build/ruby-bio-1.5.0/debian/ruby-bio/usr/lib/ruby/vendor_ruby:. GEM_PATH=debian/ruby-bio/usr/share/rubygems-integration/all:/var/lib/gems/2.3.0:/usr/lib/arm-linux-gnueabihf/rubygems-integration/2.3.0:/usr/share/rubygems-integration/2.3.0:/usr/share/rubygems-integration/all ruby2.3 debian/ruby-tests.rb
Loaded suite debian/ruby-tests
Started
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.O
===============================================================================
test randomly failing skipped [test_randomize_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomizeChi2)]
/build/ruby-bio-1.5.0/test/unit/bio/sequence/test_common.rb:324:in `test_randomize_equiprobability'
===============================================================================
O
===============================================================================
test randomly failing skipped [test_randomize_with_hash_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomizeChi2)]
/build/ruby-bio-1.5.0/test/unit/bio/sequence/test_common.rb:330:in `test_randomize_with_hash_equiprobability'
===============================================================================
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Finished in 115.625999559 seconds.
------
3849 tests, 21479 assertions, 0 failures, 0 errors, 0 pendings, 2 omissions, 0 notifications
100% passed
------
33.29 tests/s, 185.76 assertions/s
┌──────────────────────────────────────────────────────────────────────────────┐
│ dh_ruby --install finished │
└──────────────────────────────────────────────────────────────────────────────┘
for FILE in `ls debian/ruby-bio/usr/bin/*rb`; do \
BINNAME=$(echo $FILE | sed 's/\.rb$//'); \
mv $FILE $BINNAME; \
done
make[1] : on quitte le répertoire « /build/ruby-bio-1.5.0 »
dh_installdocs -O--buildsystem=ruby
dh_ruby_fixdocs -O--buildsystem=ruby
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1738)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
/srv/reproducible-results/rbuild-debian-da0HAKk4/tmp.1oqbziMtR1: 86.9% -- replaced with /srv/reproducible-results/rbuild-debian-da0HAKk4/tmp.1oqbziMtR1.gz
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