[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_16 #5797
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Sat May 28 10:36:58 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_i386_16/5797/>
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[...truncated 784 lines...]
copying cutadapt/xopen.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt
creating /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/scripts
copying cutadapt/scripts/cutadapt.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/scripts
copying cutadapt/scripts/__init__.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/scripts
running build_ext
building 'cutadapt._align' extension
creating build
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/cutadapt
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cutadapt/_align.c -o build/temp.linux-x86_64-2.7/cutadapt/_align.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cutadapt/_align.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_align.so
building 'cutadapt._qualtrim' extension
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cutadapt/_qualtrim.c -o build/temp.linux-x86_64-2.7/cutadapt/_qualtrim.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cutadapt/_qualtrim.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_qualtrim.so
building 'cutadapt._seqio' extension
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c cutadapt/_seqio.c -o build/temp.linux-x86_64-2.7/cutadapt/_seqio.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-2.7/cutadapt/_seqio.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_seqio.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/cutadapt -> build/scripts-2.7
changing mode of build/scripts-2.7/cutadapt from 644 to 755
I: pybuild base:184: /usr/bin/python3 setup.py build
running build
running build_py
creating /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/qualtrim.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/adapters.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/seqio.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/compat.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/report.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/__main__.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/__init__.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/colorspace.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/filters.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/modifiers.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/align.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
copying cutadapt/xopen.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt
creating /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts
copying cutadapt/scripts/cutadapt.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts
copying cutadapt/scripts/__init__.py -> /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts
running build_ext
building 'cutadapt._align' extension
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/cutadapt
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cutadapt/_align.c -o build/temp.linux-x86_64-3.5/cutadapt/_align.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/cutadapt/_align.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_align.cpython-35m-i386-linux-gnu.so
building 'cutadapt._qualtrim' extension
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cutadapt/_qualtrim.c -o build/temp.linux-x86_64-3.5/cutadapt/_qualtrim.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/cutadapt/_qualtrim.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_qualtrim.cpython-35m-i386-linux-gnu.so
building 'cutadapt._seqio' extension
i586-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c cutadapt/_seqio.c -o build/temp.linux-x86_64-3.5/cutadapt/_seqio.o
i586-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.5/cutadapt/_seqio.o -o /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_seqio.cpython-35m-i386-linux-gnu.so
running build_scripts
creating build/scripts-3.5
copying and adjusting bin/cutadapt -> build/scripts-3.5
changing mode of build/scripts-3.5/cutadapt from 644 to 755
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:184: cd /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
I: pybuild base:184: cd /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build; python3.5 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
fakeroot debian/rules binary
dh binary --with python2,python3 --buildsystem=pybuild
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:184: /usr/bin/python setup.py install --root /build/python-cutadapt-1.9.1/debian/python-cutadapt
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_seqio.so -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/qualtrim.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/adapters.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/scripts
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/scripts/cutadapt.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/scripts
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/scripts/__init__.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/scripts
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_qualtrim.so -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/seqio.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/compat.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/report.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/__main__.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/__init__.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/colorspace.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/filters.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/modifiers.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/align.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/_align.so -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_2.7/build/cutadapt/xopen.py -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/qualtrim.py to qualtrim.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/adapters.py to adapters.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/scripts/cutadapt.py to cutadapt.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/scripts/__init__.py to __init__.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/seqio.py to seqio.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/compat.py to compat.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/report.py to report.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/__main__.py to __main__.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/__init__.py to __init__.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/colorspace.py to colorspace.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/filters.py to filters.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/modifiers.py to modifiers.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/align.py to align.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/xopen.py to xopen.pyc
running install_scripts
creating /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/bin
copying build/scripts-2.7/cutadapt -> /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/bin
changing mode of /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/bin/cutadapt to 755
running install_egg_info
Writing /build/python-cutadapt-1.9.1/debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt-1.9.1.egg-info
I: pybuild base:184: /usr/bin/python3 setup.py install --root /build/python-cutadapt-1.9.1/debian/python3-cutadapt
running install
running build
running build_py
running build_ext
running build_scripts
running install_lib
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_seqio.cpython-35m-i386-linux-gnu.so -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/qualtrim.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/adapters.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts/cutadapt.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts/__pycache__
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts/__pycache__/__init__.cpython-35.pyc -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts/__pycache__
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/scripts/__init__.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/seqio.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/compat.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/__pycache__
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/__pycache__/__init__.cpython-35.pyc -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/__pycache__
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/report.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/__main__.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/__init__.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_qualtrim.cpython-35m-i386-linux-gnu.so -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/_align.cpython-35m-i386-linux-gnu.so -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/colorspace.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/filters.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/modifiers.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/align.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
copying /build/python-cutadapt-1.9.1/.pybuild/pythonX.Y_3.5/build/cutadapt/xopen.py -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/qualtrim.py to qualtrim.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/adapters.py to adapters.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/scripts/cutadapt.py to cutadapt.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/seqio.py to seqio.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/compat.py to compat.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/report.py to report.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/__main__.py to __main__.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/colorspace.py to colorspace.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/filters.py to filters.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/modifiers.py to modifiers.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/align.py to align.cpython-35.pyc
byte-compiling /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt/xopen.py to xopen.cpython-35.pyc
running install_scripts
creating /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/bin
copying build/scripts-3.5/cutadapt -> /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/bin
changing mode of /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/bin/cutadapt to 755
running install_egg_info
Writing /build/python-cutadapt-1.9.1/debian/python3-cutadapt/usr/lib/python3.5/dist-packages/cutadapt-1.9.1.egg-info
debian/rules override_dh_install
make[1]: Entering directory '/build/python-cutadapt-1.9.1'
dh_install
mv debian/python3-cutadapt/usr/bin/cutadapt debian/python3-cutadapt/usr/bin/cutadapt3
make[1]: Leaving directory '/build/python-cutadapt-1.9.1'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
dh_python2 -O--buildsystem=pybuild
I: dh_python2 fs:328: renaming _align.so to _align.i386-linux-gnu.so
I: dh_python2 fs:328: renaming _qualtrim.so to _qualtrim.i386-linux-gnu.so
I: dh_python2 fs:328: renaming _seqio.so to _seqio.i386-linux-gnu.so
dh_python3 -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_strip -O--buildsystem=pybuild
dh_makeshlibs -O--buildsystem=pybuild
dh_shlibdeps -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/_seqio.i386-linux-gnu.so debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/_align.i386-linux-gnu.so debian/python-cutadapt/usr/lib/python2.7/dist-packages/cutadapt/_qualtrim.i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-cutadapt/usr/lib/python3/dist-packages/cutadapt/_align.cpython-35m-i386-linux-gnu.so debian/python3-cutadapt/usr/lib/python3/dist-packages/cutadapt/_seqio.cpython-35m-i386-linux-gnu.so debian/python3-cutadapt/usr/lib/python3/dist-packages/cutadapt/_qualtrim.cpython-35m-i386-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols)
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cutadapt: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cutadapt: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python-cutadapt: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-cutadapt: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cutadapt: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cutadapt: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package python3-cutadapt: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-cutadapt: unused substitution variable ${python3:Versions}
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_1.9.1-1_i386.deb'.
dpkg-deb: building package 'python-cutadapt-dbgsym' in '../python-cutadapt-dbgsym_1.9.1-1_i386.deb'.
dpkg-deb: building package 'python-cutadapt' in '../python-cutadapt_1.9.1-1_i386.deb'.
dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_1.9.1-1_i386.deb'.
dpkg-distaddfile python-cutadapt_1.9.1-1_i386.buildinfo python optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any,all >../python-cutadapt_1.9.1-1_i386.changes
dpkg-genchanges: warning: package python3-cutadapt-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package python-cutadapt-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build python-cutadapt-1.9.1
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/43459 and its subdirectories
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1738)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
/srv/reproducible-results/rbuild-debian-C6GVmSAG/tmp.1WwWZjwF6M: 43.5% -- replaced with /srv/reproducible-results/rbuild-debian-C6GVmSAG/tmp.1WwWZjwF6M.gz
INFO: Starting at 2016-05-28 10:36:57.705644
INFO: Finished at 2016-05-28 10:36:57.828529, took: 0:00:00.122906
Sat May 28 10:36:57 UTC 2016 - https://jenkins.debian.net/job/reproducible_builder_i386_16/5797/console got remote error with exit code 143 from profitbricks-build6-i386.debian.net for build #1 for python-cutadapt on unstable/i386
Sleeping 5m before aborting the job.
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