[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_7 #7731
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Wed Jun 15 08:56:22 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_i386_7/7731/>
------------------------------------------
[...truncated 2119 lines...]
PASS: ../eg/ml_imputation
PASS: ../eg/boot_clt
PASS: ../eg/db_fns
PASS: ../eg/jack
PASS: ../eg/cross_models
PASS: ../eg/logit
PASS: ../eg/transform
PASS: distribution_tests
PASS: update_via_rng
PASS: ../eg/test_updating
PASS: lognormal_test
PASS: test_apop
============================================================================
Testsuite summary for apophenia 1.0
============================================================================
# TOTAL: 50
# PASS: 50
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[4]: Leaving directory '/build/apophenia-1.0+ds/_build/tests'
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/tests'
Making check in docs
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/docs'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/docs'
make[1]: Leaving directory '/build/apophenia-1.0+ds/_build'
fakeroot debian/rules binary
dh binary --with autoreconf --builddirectory=_build --parallel
dh_testroot -O--builddirectory=_build -O--parallel
dh_prep -O--builddirectory=_build -O--parallel
dh_auto_install -O--builddirectory=_build -O--parallel -Napophenia-doc
make -j18 install DESTDIR=/build/apophenia-1.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/apophenia-1.0+ds/_build'
Making install in transform
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/transform'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/transform'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/transform'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/transform'
Making install in model
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/model'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/model'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/model'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/model'
Making install in .
make[2]: Entering directory '/build/apophenia-1.0+ds/_build'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build'
/bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/include'
/bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu'
/bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig'
/bin/bash ./libtool --mode=install /usr/bin/install -c libapophenia.la '/build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu'
/usr/bin/install -c -m 644 apophenia.pc '/build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig'
/usr/bin/install -c -m 644 apop.h '/build/apophenia-1.0+ds/debian/tmp/usr/include'
libtool: install: /usr/bin/install -c .libs/libapophenia.so.2.0.0 /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/libapophenia.so.2.0.0
libtool: install: (cd /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libapophenia.so.2.0.0 libapophenia.so.2 || { rm -f libapophenia.so.2 && ln -s libapophenia.so.2.0.0 libapophenia.so.2; }; })
libtool: install: (cd /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libapophenia.so.2.0.0 libapophenia.so || { rm -f libapophenia.so && ln -s libapophenia.so.2.0.0 libapophenia.so; }; })
libtool: install: /usr/bin/install -c .libs/libapophenia.lai /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/libapophenia.la
libtool: install: /usr/bin/install -c .libs/libapophenia.a /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/libapophenia.a
libtool: install: chmod 644 /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/libapophenia.a
libtool: install: ranlib /build/apophenia-1.0+ds/debian/tmp/usr/lib/i386-linux-gnu/libapophenia.a
libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu'
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build'
Making install in cmd
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/cmd'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/cmd'
/bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/bin'
/bin/mkdir -p '/build/apophenia-1.0+ds/debian/tmp/usr/share/man/man1'
/bin/bash ../libtool --mode=install /usr/bin/install -c apop_text_to_db apop_db_to_crosstab apop_plot_query '/build/apophenia-1.0+ds/debian/tmp/usr/bin'
/usr/bin/install -c -m 644 apop_text_to_db.1 apop_db_to_crosstab.1 apop_plot_query.1 '/build/apophenia-1.0+ds/debian/tmp/usr/share/man/man1'
libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/i386-linux-gnu'
libtool: install: /usr/bin/install -c .libs/apop_text_to_db /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_text_to_db
libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/i386-linux-gnu'
libtool: install: /usr/bin/install -c .libs/apop_db_to_crosstab /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_db_to_crosstab
libtool: warning: '../libapophenia.la' has not been installed in '/usr/lib/i386-linux-gnu'
libtool: install: /usr/bin/install -c .libs/apop_plot_query /build/apophenia-1.0+ds/debian/tmp/usr/bin/apop_plot_query
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/cmd'
Making install in eg
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/eg'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/eg'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/eg'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/eg'
Making install in tests
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/tests'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/tests'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/tests'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/tests'
Making install in docs
make[2]: Entering directory '/build/apophenia-1.0+ds/_build/docs'
make[3]: Entering directory '/build/apophenia-1.0+ds/_build/docs'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/apophenia-1.0+ds/_build/docs'
make[2]: Leaving directory '/build/apophenia-1.0+ds/_build/docs'
make[1]: Leaving directory '/build/apophenia-1.0+ds/_build'
dh_install -O--builddirectory=_build -O--parallel
dh_installdocs -O--builddirectory=_build -O--parallel
dh_installchangelogs -O--builddirectory=_build -O--parallel
dh_installexamples -O--builddirectory=_build -O--parallel
dh_installman -O--builddirectory=_build -O--parallel
dh_perl -O--builddirectory=_build -O--parallel
dh_link -O--builddirectory=_build -O--parallel
dh_strip_nondeterminism -O--builddirectory=_build -O--parallel
debian/rules override_dh_compress-indep
make[1]: Entering directory '/build/apophenia-1.0+ds'
dh_compress -X.pdf -Xexamples
make[1]: Leaving directory '/build/apophenia-1.0+ds'
dh_compress -O--builddirectory=_build -O--parallel -Napophenia-doc
dh_fixperms -O--builddirectory=_build -O--parallel
dh_strip -O--builddirectory=_build -O--parallel
dh_makeshlibs -O--builddirectory=_build -O--parallel
dh_shlibdeps -O--builddirectory=_build -O--parallel
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apophenia-bin/usr/bin/apop_db_to_crosstab debian/apophenia-bin/usr/bin/apop_text_to_db debian/apophenia-bin/usr/bin/apop_plot_query were not linked against libgslcblas.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apophenia-bin/usr/bin/apop_db_to_crosstab debian/apophenia-bin/usr/bin/apop_text_to_db debian/apophenia-bin/usr/bin/apop_plot_query were not linked against libgomp.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/apophenia-bin/usr/bin/apop_db_to_crosstab debian/apophenia-bin/usr/bin/apop_text_to_db debian/apophenia-bin/usr/bin/apop_plot_query were not linked against libm.so.6 (they use none of the library's symbols)
dh_installdeb -O--builddirectory=_build -O--parallel
dh_gencontrol -O--builddirectory=_build -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -O--builddirectory=_build -O--parallel
dh_builddeb -O--builddirectory=_build -O--parallel
dpkg-deb: building package 'libapophenia2-dbgsym' in '../libapophenia2-dbgsym_1.0+ds-2_i386.deb'.
dpkg-deb: building package 'apophenia-doc' in '../apophenia-doc_1.0+ds-2_all.deb'.
dpkg-deb: building package 'libapophenia2-dev' in '../libapophenia2-dev_1.0+ds-2_i386.deb'.
dpkg-deb: building package 'apophenia-bin-dbgsym' in '../apophenia-bin-dbgsym_1.0+ds-2_i386.deb'.
dpkg-deb: building package 'apophenia-bin' in '../apophenia-bin_1.0+ds-2_i386.deb'.
dpkg-deb: building package 'libapophenia2' in '../libapophenia2_1.0+ds-2_i386.deb'.
dpkg-distaddfile apophenia_1.0+ds-2_i386.buildinfo math optional
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any,all >../apophenia_1.0+ds-2_i386.changes
dpkg-genchanges: warning: package apophenia-bin-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package libapophenia2-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build apophenia-1.0+ds
dpkg-source: info: using options from apophenia-1.0+ds/debian/source/options: --compression=xz --compression-level=9
dpkg-buildpackage: info: binary-only upload (no source included)
I: copying local configuration
I: unmounting /sys filesystem
I: unmounting /dev/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/16987 and its subdirectories
I: Current time: Tue Jun 14 21:00:46 GMT+12 2016
I: pbuilder-time-stamp: 1465981246
+ PRESULT=0
+ '[' 0 -eq 124 ']'
+ false
+ set +x
Wed Jun 15 09:00:47 UTC 2016 - build #1 for apophenia/testing/i386 on profitbricks-build2-i386 done.
/srv/reproducible-results/rbuild-debian-CEOCqFMe/tmp.x8OsrcZCnX: 89.6% -- replaced with /srv/reproducible-results/rbuild-debian-CEOCqFMe/tmp.x8OsrcZCnX.gz
Wed Jun 15 09:00:47 UTC 2016 - /srv/jenkins/bin/reproducible_build.sh stopped running as /tmp/jenkins-script-AsJHpJjt, which will now be removed.
/srv/reproducible-results/rbuild-debian-9z2I2KCc:
total 16
-rw-r--r-- 1 jenkins jenkins 2432 Feb 5 09:15 apophenia_1.0+ds-2.dsc
drwxr-xr-x 2 jenkins jenkins 4096 Jun 15 08:56 b1
drwxr-xr-x 2 jenkins jenkins 4096 Jun 15 02:43 b2
-rw------- 1 jenkins jenkins 3142 Jun 15 02:43 tmp.LdMiCumZAW
/srv/reproducible-results/rbuild-debian-9z2I2KCc/b1:
total 2340
-rw-r--r-- 1 jenkins jenkins 17478 Jun 15 08:56 apophenia-bin-dbgsym_1.0+ds-2_i386.deb
-rw-r--r-- 1 jenkins jenkins 34420 Jun 15 08:56 apophenia-bin_1.0+ds-2_i386.deb
-rw-r--r-- 1 jenkins jenkins 453460 Jun 15 08:56 apophenia-doc_1.0+ds-2_all.deb
-rw-r--r-- 1 jenkins jenkins 11776 Jun 15 08:56 apophenia_1.0+ds-2.debian.tar.xz
-rw-r--r-- 1 jenkins jenkins 2432 Jun 15 08:56 apophenia_1.0+ds-2.dsc
-rw-r--r-- 1 jenkins jenkins 9668 Jun 15 08:56 apophenia_1.0+ds-2_i386.buildinfo
-rw-r--r-- 1 jenkins jenkins 3434 Jun 15 08:56 apophenia_1.0+ds-2_i386.changes
-rw-r--r-- 1 jenkins jenkins 526500 Jun 15 08:56 apophenia_1.0+ds.orig.tar.gz
-rw-r--r-- 1 jenkins jenkins 229349 Jun 15 08:56 build.log
-rw-r--r-- 1 jenkins jenkins 450034 Jun 15 08:56 libapophenia2-dbgsym_1.0+ds-2_i386.deb
-rw-r--r-- 1 jenkins jenkins 336116 Jun 15 08:56 libapophenia2-dev_1.0+ds-2_i386.deb
-rw-r--r-- 1 jenkins jenkins 275960 Jun 15 08:56 libapophenia2_1.0+ds-2_i386.deb
/srv/reproducible-results/rbuild-debian-9z2I2KCc/b2:
total 0
====================================================================================
Tue Jul 18 15:19:17 UTC 2017 - running /srv/jenkins/bin/reproducible_build.sh () on profitbricks-build6-i386 now.
To learn to understand this, clone git.debian.org/git/qa/jenkins.debian.net.git
and then have a look at the files README, INSTALL, CONTRIBUTING and maybe TODO.
This invocation of this script, which is located in bin/reproducible_build.sh, has been called using "2 apophenia testing /srv/reproducible-results/rbuild-debian-9z2I2KCc" as arguments.
====================================================================================
Tue Jul 18 15:19:17 UTC 2017 - start running "/srv/jenkins/bin/reproducible_build.sh" (md5sum ed2db424a0392c366f6acc3b202e2522) as "/tmp/jenkins-script-Xa12AL02" on profitbricks-build6-i386.
Reading package lists...
NOTICE: 'apophenia' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-science/packages/apophenia.git
Please use:
git clone https://anonscm.debian.org/git/debian-science/packages/apophenia.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 541 kB of source archives.
Get:1 http://ftp.de.debian.org/debian testing/main apophenia 1.0+ds-2 (dsc) [2432 B]
Get:2 http://ftp.de.debian.org/debian testing/main apophenia 1.0+ds-2 (tar) [526 kB]
Get:3 http://ftp.de.debian.org/debian testing/main apophenia 1.0+ds-2 (diff) [11.8 kB]
Fetched 541 kB in 0s (2712 kB/s)
Download complete and in download only mode
=============================================================================
Re-Building apophenia in testing on i386 on profitbricks-build6-i386.debian.net now.
Date: Tue Jul 18 17:19:18 CEST 2017
Date UTC: Tue Jul 18 15:19:18 UTC 2017
=============================================================================
++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian-9z2I2KCc
+ local TMPCFG=/srv/reproducible-results/rbuild-debian-9z2I2KCc/pbuilderrc_kin6
+ NEW_NUM_CPU=17
+ case $ARCH in
+ locale=de_CH
+ language=de
+ cat
+ set +e
+ sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian-9z2I2KCc/pbuilderrc_kin6 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts '-b --buildinfo-identifier=i386' --basetgz /var/cache/pbuilder/testing-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian-9z2I2KCc/b2 --logfile b2/build.log apophenia_1.0+ds-2.dsc
W: /root/.pbuilderrc does not exist
I: Logging to b2/build.log
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Mit Jul 19 05:19:18 GMT-14 2017
I: pbuilder-time-stamp: 1500391158
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/testing-reproducible-base.tgz]
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1738)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
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