[Qa-jenkins-scm] Build failed in Jenkins: reproducible_builder_i386_11 #10379
jenkins at jenkins.debian.net
jenkins at jenkins.debian.net
Fri Aug 5 10:14:05 UTC 2016
See <https://jenkins.debian.net/job/reproducible_builder_i386_11/10379/>
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[...truncated 56127 lines...]
1
Warning: Unused dummy argument 'ireorder' at (1) [-Wunused-dummy-argument]
molread.F:388:54:
& ATMNAM, COORD, NAOATM)
1
Warning: Unused dummy argument 'naoatm' at (1) [-Wunused-dummy-argument]
molread.F:386:37:
& NFCT, NBASIS, ALPHA, IXALPHA,
1
Warning: Unused dummy argument 'nfct' at (1) [-Wunused-dummy-argument]
mpif77 -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include det_segsizes.F
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
det_segsizes.F:237:10:
i = sqrt(1.*(iMult+0.1))
1
Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
det_segsizes.F:109:20:
integer iSpin1, iSpin2, pop(2,3)
1
Warning: Unused variable 'ispin1' declared at (1) [-Wunused-variable]
det_segsizes.F:109:28:
integer iSpin1, iSpin2, pop(2,3)
1
Warning: Unused variable 'ispin2' declared at (1) [-Wunused-variable]
det_segsizes.F:283:21:
logical bAccept
1
Warning: Unused variable 'baccept' declared at (1) [-Wunused-variable]
det_segsizes.F:281:27:
double precision dTmp, d1, d2
1
Warning: Unused variable 'dtmp' declared at (1) [-Wunused-variable]
det_segsizes.F:28:21:
integer arg_1, arg_2, arg_3, iFlags(100), ivCharge(100)
1
Warning: Unused variable 'arg_1' declared at (1) [-Wunused-variable]
det_segsizes.F:28:28:
integer arg_1, arg_2, arg_3, iFlags(100), ivCharge(100)
1
Warning: Unused variable 'arg_2' declared at (1) [-Wunused-variable]
det_segsizes.F:28:35:
integer arg_1, arg_2, arg_3, iFlags(100), ivCharge(100)
1
Warning: Unused variable 'arg_3' declared at (1) [-Wunused-variable]
det_segsizes.F:23:19:
integer iatom, nelec, naocc, nbocc, iShell, ierr
1
Warning: Unused variable 'iatom' declared at (1) [-Wunused-variable]
det_segsizes.F:23:54:
integer iatom, nelec, naocc, nbocc, iShell, ierr
1
Warning: Unused variable 'ierr' declared at (1) [-Wunused-variable]
det_segsizes.F:28:48:
integer arg_1, arg_2, arg_3, iFlags(100), ivCharge(100)
1
Warning: Unused variable 'iflags' declared at (1) [-Wunused-variable]
det_segsizes.F:28:63:
integer arg_1, arg_2, arg_3, iFlags(100), ivCharge(100)
1
Warning: Unused variable 'ivcharge' declared at (1) [-Wunused-variable]
det_segsizes.F:23:26:
integer iatom, nelec, naocc, nbocc, iShell, ierr
1
Warning: Unused variable 'nelec' declared at (1) [-Wunused-variable]
mpif77 -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include handle_hessian.F
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
handle_hessian.F:24:21:
integer nunique
1
Warning: Unused variable 'nunique' declared at (1) [-Wunused-variable]
mpif77 -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include worker_init.F
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
worker_init.F:85:17:
nwmem = size / bytes_per_double
1
Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion]
worker_init.F:57:23:
logical heap_flag
1
Warning: Unused variable 'heap_flag' declared at (1) [-Wunused-variable]
worker_init.F:41:24:
integer*8 size, nw, indmem, i8temp
1
Warning: Unused variable 'nw' declared at (1) [-Wunused-variable]
timerz.h:17:58: Warning: Unused variable 'timer_max' declared at (1) [-Wunused-variable]
timerz.h:17:47: Warning: Unused variable 'timer_min' declared at (1) [-Wunused-variable]
mpif77 -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include verify_aces2_params.F
f951: Warning: Nonexistent include directory '/include' [-Wmissing-include-dirs]
mpicc -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -g -Wall -O2 -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include c_exit.c
mpicc -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -g -Wall -O2 -I../sia/include -I../aces/aces_library/a2driver/aces2/include -I../sia/sip/include -I$MPIHOME/include sumz.c
sumz.c: In function 'release_mutex_block_':
sumz.c:149:8: warning: unused variable 'ierr' [-Wunused-variable]
int ierr;
^
sumz.c: In function 'AddingData':
sumz.c:257:12: warning: variable 'alpha' set but not used [-Wunused-but-set-variable]
double alpha;
^
sumz.c:256:11: warning: variable 'fone' set but not used [-Wunused-but-set-variable]
f_int fone;
^
sumz.c:255:11: warning: variable 'fbsize' set but not used [-Wunused-but-set-variable]
f_int fbsize;
^
sumz.c: In function 'one_pass_of_server':
sumz.c:430:9: warning: variable 'istat' set but not used [-Wunused-but-set-variable]
int istat;
^
sumz.c:426:9: warning: unused variable 'ierr' [-Wunused-variable]
int ierr;
^
sumz.c: In function 'server_at_barrier':
sumz.c:593:9: warning: unused variable 'istat' [-Wunused-variable]
int istat;
^
sumz.c:589:9: warning: unused variable 'ierr' [-Wunused-variable]
int ierr;
^
sumz.c:588:17: warning: unused variable 'barrier_request' [-Wunused-variable]
MPI_Request barrier_request;
^
sumz.c: In function 'ProcessMsg':
sumz.c:783:11: warning: unused variable 'flag' [-Wunused-variable]
int i, flag, wait_for_block;
^
sumz.c:783:8: warning: unused variable 'i' [-Wunused-variable]
int i, flag, wait_for_block;
^
sumz.c:782:12: warning: unused variable 'block_addr' [-Wunused-variable]
double *block_addr;
^
sumz.c: In function 'ProcessPardoMsg':
sumz.c:976:8: warning: unused variable 'ierr' [-Wunused-variable]
int ierr;
^
sumz.c: In function 'sendrealdata':
sumz.c:1070:12: warning: unused variable 'd' [-Wunused-variable]
double d;
^
sumz.c:1069:16: warning: unused variable 'status' [-Wunused-variable]
MPI_Status status;
^
sumz.c: In function 'requestblock':
sumz.c:1170:16: warning: unused variable 'status' [-Wunused-variable]
MPI_Status status;
^
sumz.c:1168:12: warning: unused variable 'ierr' [-Wunused-variable]
int i, ierr;
^
sumz.c: In function 'sumz_work_':
sumz.c:1264:10: warning: unused variable 'tstr' [-Wunused-variable]
char tstr[41];
^
sumz.c:1260:10: warning: unused variable 'arg' [-Wunused-variable]
int *arg;
^
sumz.c:1258:9: warning: unused variable 'provide_level' [-Wunused-variable]
int provide_level;
^
sumz.c:1257:12: warning: unused variable 'j' [-Wunused-variable]
int i, j;
^
sumz.c:1256:9: warning: variable 'mworkingbuffer' set but not used [-Wunused-but-set-variable]
int mworkingbuffer;
^
sumz.c: In function 'one_pass_of_server':
sumz.c:559:18: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf("Error: Array %d, block %d was requested, but was not found on processor %d\n",
^
sumz.c: In function 'server_at_barrier':
sumz.c:717:36: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (pardo_info[index].state == NullState)
^
mpif77 -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -o xaces3 \
reorder_coefficients.o find_seg.o check_jodadone.o reorder_rohf.o joda_exit.o clear_static_data_requests.o init_data.o nuclear_nuclear_repulsion_energy.o geometry.o find_jobflow.o worker_termination.o int_send_common.o int_gen_sizer.o reset_internal_system_data.o write_zmat_auto.o write_default_sial_programs.o get_sial_config_params.o aces_com_parallel_aces.o joda_prep.o beta.o scf_init.o set_ecp_charges.o worker_work.o decode_fmo_params.o timer_data.o descramble_coefficients.o nuclear_nuclear_gradient.o int_gen_init.o handle_gradient.o molread.o det_segsizes.o handle_hessian.o worker_init.o verify_aces2_params.o c_exit.o sumz.o ../sia/manager/check_consistency.o ../sia/manager/check_for_server_array.o ../sia/manager/check_preparesum_work.o ../sia/manager/check_work_stack_for_delay.o ../sia/manager/claim_memory_block.o ../sia/manager/clear_server_stats.o ../sia/manager/diskcall.o ../sia/manager/distribute_server_info.o ../sia/manager/do_backup.o ../sia/manager/find_clean_block.o ../sia/manager/find_free_diskloc.o ../sia/manager/find_oldest_dirty_block.o ../sia/manager/find_server_table_ptr.o ../sia/manager/insert_work_node.o ../sia/manager/make_free_block.o ../sia/manager/mark_block_clean.o ../sia/manager/mark_block_dirty.o ../sia/manager/pop_clean_block.o ../sia/manager/pop_work_node.o ../sia/manager/prequest_copy_slice.o ../sia/manager/print_server_data.o ../sia/manager/process_prepare_message.o ../sia/manager/process_preparesum_message.o ../sia/manager/process_prequest_message.o ../sia/manager/process_request_message.o ../sia/manager/process_server_blocks_to_list_msg.o ../sia/manager/process_server_blocks_to_list_no_mpi_io.o ../sia/manager/process_server_checkpoint_msg.o ../sia/manager/process_server_commit_msg.o ../sia/manager/process_server_copy_message.o ../sia/manager/process_server_delete_message.o ../sia/manager/process_server_list_to_blocks_msg.o ../sia/manager/process_server_restart_msg.o ../sia/manager/process_work_queue_entry.o ../sia/manager/ptr_check.o ../sia/manager/push_clean_block.o ../sia/manager/push_work_node.o ../sia/manager/remove_from_dirty_list.o ../sia/manager/remove_work_head.o ../sia/manager/server_abort_job.o ../sia/manager/sip_server_init.o ../sia/manager/sip_server_work.o ../sia/manager/syscopy.o ../sia/manager/translate_key.o ../sia/worker/block_map_table_setup.o ../sia/worker/build_segment_table.o ../sia/worker/built_cmp2zmat.o ../sia/worker/determine_stack_blocksizes.o ../sia/worker/fragment_orbitals.o ../sia/worker/fshells_to_segments.o ../sia/worker/get_subrange_segments.o ../sia/worker/get_symbolic_constant.o ../sia/worker/init_c.o ../sia/worker/init_eps.o ../sia/worker/init_fock.o ../sia/worker/init_fockrohf.o ../sia/worker/init_oed_integrals.o ../sia/worker/print_symbolic_constants.o ../sia/worker/refill_block_map_table.o ../sia/worker/remap.o ../sia/worker/send_static_data.o ../sia/worker/shells_to_segments.o ../sia/worker/sial_compile_and_send_tables.o ../sia/worker/sial_compile_and_send_tables1.o ../sia/worker/sip_fmain.o ../sia/worker/stack_distribution.o ../sia/worker/vmlgen.o ../sia/worker/vtdemo_init.o ../sia/worker/write_eig_data.o ../aces/aces_library/special_directory/direct_integral/aces_to_erd.o ../aces/aces_library/special_directory/direct_integral/binpack.o ../aces/aces_library/special_directory/direct_integral/comp_dipole_moment.o ../aces/aces_library/special_directory/direct_integral/comp_first_moment.o ../aces/aces_library/special_directory/direct_integral/comp_fock_der.o ../aces/aces_library/special_directory/direct_integral/comp_overlap_der.o ../aces/aces_library/special_directory/direct_integral/comp_return_derv_xyz.o ../aces/aces_library/special_directory/direct_integral/comp_return_h1.o ../aces/aces_library/special_directory/direct_integral/comp_return_h1_nodiag.o ../aces/aces_library/special_directory/direct_integral/comp_return_ovl.o ../aces/aces_library/special_directory/direct_integral/comp_return_x.o ../aces/aces_library/special_directory/direct_integral/comp_return_xx.o ../aces/aces_library/special_directory/direct_integral/comp_return_xy.o ../aces/aces_library/special_directory/direct_integral/comp_return_xz.o ../aces/aces_library/special_directory/direct_integral/comp_return_y.o ../aces/aces_library/special_directory/direct_integral/comp_return_yy.o ../aces/aces_library/special_directory/direct_integral/comp_return_yz.o ../aces/aces_library/special_directory/direct_integral/comp_return_z.o ../aces/aces_library/special_directory/direct_integral/comp_return_zz.o ../aces/aces_library/special_directory/direct_integral/comp_second_moment.o ../aces/aces_library/special_directory/direct_integral/compute_der2_batch.o ../aces/aces_library/special_directory/direct_integral/compute_der_batch.o ../aces/aces_library/special_directory/direct_integral/compute_erd3.o ../aces/aces_library/special_directory/direct_integral/compute_erd_2e_Sderv_integrals.o ../aces/aces_library/special_directory/direct_integral/compute_erd_2e_derv_integrals.o ../aces/aces_library/special_directory/direct_integral/compute_integrals.o ../aces/aces_library/special_directory/direct_integral/compute_integrals_wrapper.o ../aces/aces_library/special_directory/direct_integral/compute_oed_integrals.o ../aces/aces_library/special_directory/direct_integral/compute_return_1soix.o ../aces/aces_library/special_directory/direct_integral/compute_return_1soiy.o ../aces/aces_library/special_directory/direct_integral/compute_return_1soiz.o ../aces/aces_library/special_directory/direct_integral/compute_return_2soix.o ../aces/aces_library/special_directory/direct_integral/compute_return_2soiy.o ../aces/aces_library/special_directory/direct_integral/compute_return_2soiz.o ../aces/aces_library/special_directory/direct_integral/contract_ecp_derv_integrals.o ../aces/aces_library/special_directory/direct_integral/contract_erd_2der.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_integrals.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_num.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_type1.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_type1_numint.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_type1a.o ../aces/aces_library/special_directory/direct_integral/contract_oed_2derv_type1b.o ../aces/aces_library/special_directory/direct_integral/contract_oed_derv_integrals.o ../aces/aces_library/special_directory/direct_integral/ecp_renorm.o ../aces/aces_library/special_directory/direct_integral/ecp_to_erd.o ../aces/aces_library/special_directory/direct_integral/erd_scratch_mem_calc.o ../aces/aces_library/special_directory/direct_integral/fast_erd_scratch_mem_calc.o ../aces/aces_library/special_directory/direct_integral/get1e.o ../aces/aces_library/special_directory/direct_integral/lookup_shell.o ../aces/aces_library/special_directory/direct_integral/move_integrals.o ../aces/aces_library/special_directory/direct_integral/nn_repulsion_energy.o ../aces/aces_library/special_directory/direct_integral/pack_coeffs.o ../aces/aces_library/special_directory/direct_integral/pack_coeffs_oed.o ../aces/aces_library/special_directory/direct_integral/pack_coeffs_ovl3c.o ../aces/aces_library/special_directory/direct_integral/segment_mol.o ../aces/aces_library/special_directory/direct_integral/setup_ccbeg.o ../aces/aces_library/special_directory/direct_integral/sip_integral_init.o ../aces/aces_library/special_directory/direct_integral/test2d_numint.o ../aces/aces_library/special_directory/direct_integral/tester_MRT1.o ../aces/aces_library/special_directory/direct_integral/tester_MRT2.o ../aces/aces_library/special_directory/direct_integral/tester_MRT3.o ../aces/aces_library/special_directory/direct_integral/tester_MRT4.o \
-L../../lib -L/usr/lib -lstdc++ -lsip1 -lsip2 -lsialinst -lsip_shared -lframelib -laces2 -lgeopt -lsymcor -laces2 -lprop_ints -lerd -loed -lecp -ldup -lsip1 -lsip2 -lsialinst -lerd_F12 -lF12grid -loed_F12 -lsip1 -lsip2 -lblas -llapack && test -x xaces3 || rm -f xaces3
../../lib/libsip2.a(generate_scratch_filename.o): In function `generate_scratch_filename_':
/build-1st/aces3-3.0.8/src/sia/sip/sip_instructions/generate_scratch_filename.c:31: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp'
cp xaces3 ../../bin/xaces3
rm -f make.out make.err
make[3]: Leaving directory '/build-1st/aces3-3.0.8/src/main'
make[2]: Leaving directory '/build-1st/aces3-3.0.8/src'
make[2]: Entering directory '/build-1st/aces3-3.0.8/src/aces/aces_sial'
rm -f make.out make.err
make[2]: Leaving directory '/build-1st/aces3-3.0.8/src/aces/aces_sial'
make[2]: Entering directory '/build-1st/aces3-3.0.8/test_compare'
rm -f make.out make.err
mpif77 -c -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -I$MPIHOME/include test_compare.f 1>>make.out 2>>make.err
mpif77 -DMPIF2C -DMPI2 -DC_SUFFIX -DCB_SUFFIX -D__fortran -D__fortran77 -g -O2 -Wall -fno-aggressive-loop-optimizations -o xtest_compare \
test_compare.o \
-L../lib -L/usr/lib -lstdc++ -lsip1 -lsip2 -lsip_shared -lframelib -laces2 -lgeopt -lsymcor -laces2 -lerd -loed -ldup -lsip1 -lsip2 -lblas -llapack && test -x xtest_compare || rm -f xtest_compare
cp xtest_compare ../bin/xtest_compare
rm -f make.out make.err
make[2]: Leaving directory '/build-1st/aces3-3.0.8/test_compare'
make[2]: Entering directory '/build-1st/aces3-3.0.8/tests'
make[2]: Leaving directory '/build-1st/aces3-3.0.8/tests'
make[1]: Leaving directory '/build-1st/aces3-3.0.8'
debian/rules override_dh_auto_test
make[1]: Entering directory '/build-1st/aces3-3.0.8'
(cd tests; OMPI_MCA_orte_rsh_agent=/bin/false csh ./runscript-quick)
Running 1.1.1.1
[profitbricks-build2-i386:27068] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:27068] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Running 1.1.2.1
[profitbricks-build2-i386:27427] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:27427] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Running 1.1.3.1
[profitbricks-build2-i386:27687] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:27687] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Running 1.1.4.1
[profitbricks-build2-i386:27874] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:27874] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Running 1.2.1.1
[profitbricks-build2-i386:27963] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:27963] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
Running 1.2.2.1
[profitbricks-build2-i386:28190] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[profitbricks-build2-i386:28190] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
/srv/reproducible-results/rbuild-debian-MdsB1LD2/tmp.WNBo3MkxVZ: 41.0% -- replaced with /srv/reproducible-results/rbuild-debian-MdsB1LD2/tmp.WNBo3MkxVZ.gz
INFO: Starting at 2016-08-05 10:13:54.463717
INFO: Finished at 2016-08-05 10:13:54.649686, took: 0:00:00.185984
FATAL: null
java.lang.NullPointerException
at hudson.plugins.build_timeout.BuildTimeoutWrapper$EnvironmentImpl.tearDown(BuildTimeoutWrapper.java:199)
at hudson.model.Build$BuildExecution.doRun(Build.java:173)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:534)
at hudson.model.Run.execute(Run.java:1741)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:410)
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